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Sample records for fourier phase image

  1. Grid-Independent Compressive Imaging and Fourier Phase Retrieval

    ERIC Educational Resources Information Center

    Liao, Wenjing

    2013-01-01

    This dissertation is composed of two parts. In the first part techniques of band exclusion(BE) and local optimization(LO) are proposed to solve linear continuum inverse problems independently of the grid spacing. The second part is devoted to the Fourier phase retrieval problem. Many situations in optics, medical imaging and signal processing call…

  2. Grid-Based Fourier Transform Phase Contrast Imaging

    NASA Astrophysics Data System (ADS)

    Tahir, Sajjad

    Low contrast in x-ray attenuation imaging between different materials of low electron density is a limitation of traditional x-ray radiography. Phase contrast imaging offers the potential to improve the contrast between such materials, but due to the requirements on the spatial coherence of the x-ray beam, practical implementation of such systems with tabletop (i.e. non-synchrotron) sources has been limited. One recently developed phase imaging technique employs multiple fine-pitched gratings. However, the strict manufacturing tolerances and precise alignment requirements have limited the widespread adoption of grating-based techniques. In this work, we have investigated a technique recently demonstrated by Bennett et al. that utilizes a single grid of much coarser pitch. Our system consisted of a low power 100 microm spot Mo source, a CCD with 22 microm pixel pitch, and either a focused mammography linear grid or a stainless steel woven mesh. Phase is extracted from a single image by windowing and comparing data localized about harmonics of the grid in the Fourier domain. A Matlab code was written to perform the image processing. For the first time, the effects on the diffraction phase contrast and scattering amplitude images of varying grid types and periods, and of varying the window function type used to separate the harmonics, and the window widths, were investigated. Using the wire mesh, derivatives of the phase along two orthogonal directions were obtained and new methods investigated to form improved phase contrast images.

  3. Optical Fourier techniques for medical image processing and phase contrast imaging.

    PubMed

    Yelleswarapu, Chandra S; Kothapalli, Sri-Rajasekhar; Rao, D V G L N

    2008-04-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy.

  4. Optical Fourier techniques for medical image processing and phase contrast imaging

    PubMed Central

    Yelleswarapu, Chandra S.; Kothapalli, Sri-Rajasekhar; Rao, D.V.G.L.N.

    2008-01-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy. PMID:18458764

  5. Double-image self-encoding and hiding based on phase-truncated Fourier transforms and phase retrieval

    NASA Astrophysics Data System (ADS)

    Wang, Xiaogang; Zhao, Daomu

    2011-09-01

    We propose a method to encrypt two covert images into an overt image based on phase-truncated Fourier transforms and phase retrieval. In this method, the two original images are self-encoded in the manner that one of the two images is directly separated into two phase masks (PMs) and used as keys for encryption, and then multiplied by a PM which is generated by using phase retrieval algorithm. At last, the whole encryption process is completed by a Fourier transform operation. In the decryption process, the image without a separation and the two PMs used as keys for encryption are all treated as encoded data. The cryptosystem is asymmetric which means the keys for encryption are different from those for decryption. Numerical simulations are presented to show the viability and good performance of the proposed method.

  6. Single-channel color image encryption using phase retrieve algorithm in fractional Fourier domain

    NASA Astrophysics Data System (ADS)

    Sui, Liansheng; Xin, Meiting; Tian, Ailing; Jin, Haiyan

    2013-12-01

    A single-channel color image encryption is proposed based on a phase retrieve algorithm and a two-coupled logistic map. Firstly, a gray scale image is constituted with three channels of the color image, and then permuted by a sequence of chaotic pairs generated by the two-coupled logistic map. Secondly, the permutation image is decomposed into three new components, where each component is encoded into a phase-only function in the fractional Fourier domain with a phase retrieve algorithm that is proposed based on the iterative fractional Fourier transform. Finally, an interim image is formed by the combination of these phase-only functions and encrypted into the final gray scale ciphertext with stationary white noise distribution by using chaotic diffusion, which has camouflage property to some extent. In the process of encryption and decryption, chaotic permutation and diffusion makes the resultant image nonlinear and disorder both in spatial domain and frequency domain, and the proposed phase iterative algorithm has faster convergent speed. Additionally, the encryption scheme enlarges the key space of the cryptosystem. Simulation results and security analysis verify the feasibility and effectiveness of this method.

  7. Color image encryption using iterative phase retrieve process in quaternion Fourier transform domain

    NASA Astrophysics Data System (ADS)

    Sui, Liansheng; Duan, Kuaikuai

    2015-02-01

    A single-channel color image encryption method is proposed based on iterative phase iterative process in quaternion Fourier transform domain. First, three components of the plain color image is confused respectively by using cat map. Second, the confused components are combined into a pure quaternion image, which is encode to the phase only function by using an iterative phase retrieval process. Finally, the phase only function is encrypted into the gray scale ciphertext with stationary white noise distribution based on the chaotic diffusion, which has camouflage property to some extent. The corresponding plain color image can be recovered from the ciphertext only with correct keys in the decryption process. Simulation results verify the feasibility and effectiveness of the proposed method.

  8. Adaptive anisotropic diffusion for noise reduction of phase images in Fourier domain Doppler optical coherence tomography.

    PubMed

    Xia, Shaoyan; Huang, Yong; Peng, Shizhao; Wu, Yanfeng; Tan, Xiaodi

    2016-08-01

    Phase image in Fourier domain Doppler optical coherence tomography offers additional flow information of investigated samples, which provides valuable evidence towards accurate medical diagnosis. High quality phase images are thus desirable. We propose a noise reduction method for phase images by combining a synthetic noise estimation criteria based on local noise estimator (LNE) and distance median value (DMV) with anisotropic diffusion model. By identifying noise and signal pixels accurately and diffusing them with different coefficients respectively and adaptive iteration steps, we demonstrated the effectiveness of our proposed method in both phantom and mouse artery images. Comparison with other methods such as filtering method (mean, median filtering), wavelet method, probabilistic method and partial differential equation based methods in terms of peak signal-to-noise ratio (PSNR), equivalent number of looks (ENL) and contrast-to-noise ratio (CNR) showed the advantages of our method in reserving image energy and removing noise. PMID:27570687

  9. Adaptive anisotropic diffusion for noise reduction of phase images in Fourier domain Doppler optical coherence tomography

    PubMed Central

    Xia, Shaoyan; Huang, Yong; Peng, Shizhao; Wu, Yanfeng; Tan, Xiaodi

    2016-01-01

    Phase image in Fourier domain Doppler optical coherence tomography offers additional flow information of investigated samples, which provides valuable evidence towards accurate medical diagnosis. High quality phase images are thus desirable. We propose a noise reduction method for phase images by combining a synthetic noise estimation criteria based on local noise estimator (LNE) and distance median value (DMV) with anisotropic diffusion model. By identifying noise and signal pixels accurately and diffusing them with different coefficients respectively and adaptive iteration steps, we demonstrated the effectiveness of our proposed method in both phantom and mouse artery images. Comparison with other methods such as filtering method (mean, median filtering), wavelet method, probabilistic method and partial differential equation based methods in terms of peak signal-to-noise ratio (PSNR), equivalent number of looks (ENL) and contrast-to-noise ratio (CNR) showed the advantages of our method in reserving image energy and removing noise. PMID:27570687

  10. Fractional Fourier domain optical image hiding using phase retrieval algorithm based on iterative nonlinear double random phase encoding.

    PubMed

    Wang, Xiaogang; Chen, Wen; Chen, Xudong

    2014-09-22

    We present a novel image hiding method based on phase retrieval algorithm under the framework of nonlinear double random phase encoding in fractional Fourier domain. Two phase-only masks (POMs) are efficiently determined by using the phase retrieval algorithm, in which two cascaded phase-truncated fractional Fourier transforms (FrFTs) are involved. No undesired information disclosure, post-processing of the POMs or digital inverse computation appears in our proposed method. In order to achieve the reduction in key transmission, a modified image hiding method based on the modified phase retrieval algorithm and logistic map is further proposed in this paper, in which the fractional orders and the parameters with respect to the logistic map are regarded as encryption keys. Numerical results have demonstrated the feasibility and effectiveness of the proposed algorithms.

  11. Imaging Fourier transform spectrometer

    SciTech Connect

    Bennett, C.L.

    1993-09-13

    This invention is comprised of an imaging Fourier transform spectrometer having a Fourier transform infrared spectrometer providing a series of images to a focal plane array camera. The focal plane array camera is clocked to a multiple of zero crossing occurrences as caused by a moving mirror of the Fourier transform infrared spectrometer and as detected by a laser detector such that the frame capture rate of the focal plane array camera corresponds to a multiple of the zero crossing rate of the Fourier transform infrared spectrometer. The images are transmitted to a computer for processing such that representations of the images as viewed in the light of an arbitrary spectral ``fingerprint`` pattern can be displayed on a monitor or otherwise stored and manipulated by the computer.

  12. Fourier plane imaging microscopy

    SciTech Connect

    Dominguez, Daniel Peralta, Luis Grave de; Alharbi, Nouf; Alhusain, Mdhaoui; Bernussi, Ayrton A.

    2014-09-14

    We show how the image of an unresolved photonic crystal can be reconstructed using a single Fourier plane (FP) image obtained with a second camera that was added to a traditional compound microscope. We discuss how Fourier plane imaging microscopy is an application of a remarkable property of the obtained FP images: they contain more information about the photonic crystals than the images recorded by the camera commonly placed at the real plane of the microscope. We argue that the experimental results support the hypothesis that surface waves, contributing to enhanced resolution abilities, were optically excited in the studied photonic crystals.

  13. Fourier phase in Fourier-domain optical coherence tomography

    PubMed Central

    Uttam, Shikhar; Liu, Yang

    2015-01-01

    Phase of an electromagnetic wave propagating through a sample-of-interest is well understood in the context of quantitative phase imaging in transmission-mode microscopy. In the past decade, Fourier-domain optical coherence tomography has been used to extend quantitative phase imaging to the reflection-mode. Unlike transmission-mode electromagnetic phase, however, the origin and characteristics of reflection-mode Fourier phase are poorly understood, especially in samples with a slowly varying refractive index. In this paper, the general theory of Fourier phase from first principles is presented, and it is shown that Fourier phase is a joint estimate of subresolution offset and mean spatial frequency of the coherence-gated sample refractive index. It is also shown that both spectral-domain phase microscopy and depth-resolved spatial-domain low-coherence quantitative phase microscopy are special cases of this general theory. Analytical expressions are provided for both, and simulations are presented to explain and support the theoretical results. These results are further used to show how Fourier phase allows the estimation of an axial mean spatial frequency profile of the sample, along with depth-resolved characterization of localized optical density change and sample heterogeneity. Finally, a Fourier phase-based explanation of Doppler optical coherence tomography is also provided. PMID:26831383

  14. Simultaneous nonlinear encryption of grayscale and color images based on phase-truncated fractional Fourier transform and optical superposition principle.

    PubMed

    Wang, Xiaogang; Zhao, Daomu

    2013-09-01

    A nonlinear color and grayscale images cryptosystem based on phase-truncated fractional Fourier transform and optical superposition principle is proposed. In order to realize simultaneous encryption of color and grayscale images, each grayscale image is first converted into two phase masks by using an optical coherent superposition, one of which is treated as a part of input information that will be fractional Fourier transformed while the other in the form of a chaotic random phase mask (CRPM) is used as a decryption key. For the purpose of optical performance, all the processes are performed through three channels, i.e., red, green, and blue. Different from most asymmetric encryption methods, the decryption process is designed to be linear for the sake of effective decryption. The encryption level of a double random phase encryption based on phase-truncated Fourier transform is enhanced by extending it into fractional Fourier domain and the load of the keys management and transmission is lightened by using CRPMs. The security of the proposed cryptosystem is discussed and computer simulation results are presented to verify the validity of the proposed method.

  15. Interferogram conditioning for improved Fourier analysis and application to X-ray phase imaging by grating interferometry.

    PubMed

    Montaux-Lambert, Antoine; Mercère, Pascal; Primot, Jérôme

    2015-11-01

    An interferogram conditioning procedure, for subsequent phase retrieval by Fourier demodulation, is presented here as a fast iterative approach aiming at fulfilling the classical boundary conditions imposed by Fourier transform techniques. Interference fringe patterns with typical edge discontinuities were simulated in order to reveal the edge artifacts that classically appear in traditional Fourier analysis, and were consecutively used to demonstrate the correction efficiency of the proposed conditioning technique. Optimization of the algorithm parameters is also presented and discussed. Finally, the procedure was applied to grating-based interferometric measurements performed in the hard X-ray regime. The proposed algorithm enables nearly edge-artifact-free retrieval of the phase derivatives. A similar enhancement of the retrieved absorption and fringe visibility images is also achieved.

  16. Application of Fourier-wavelet regularized deconvolution for improving image quality of free space propagation x-ray phase contrast imaging.

    PubMed

    Zhou, Zhongxing; Gao, Feng; Zhao, Huijuan; Zhang, Lixin

    2012-11-21

    New x-ray phase contrast imaging techniques without using synchrotron radiation confront a common problem from the negative effects of finite source size and limited spatial resolution. These negative effects swamp the fine phase contrast fringes and make them almost undetectable. In order to alleviate this problem, deconvolution procedures should be applied to the blurred x-ray phase contrast images. In this study, three different deconvolution techniques, including Wiener filtering, Tikhonov regularization and Fourier-wavelet regularized deconvolution (ForWaRD), were applied to the simulated and experimental free space propagation x-ray phase contrast images of simple geometric phantoms. These algorithms were evaluated in terms of phase contrast improvement and signal-to-noise ratio. The results demonstrate that the ForWaRD algorithm is most appropriate for phase contrast image restoration among above-mentioned methods; it can effectively restore the lost information of phase contrast fringes while reduce the amplified noise during Fourier regularization.

  17. Fourier plane image amplifier

    DOEpatents

    Hackel, L.A.; Hermann, M.R.; Dane, C.B.; Tiszauer, D.H.

    1995-12-12

    A solid state laser is frequency tripled to 0.3 {micro}m. A small portion of the laser is split off and generates a Stokes seed in a low power oscillator. The low power output passes through a mask with the appropriate hole pattern. Meanwhile, the bulk of the laser output is focused into a larger stimulated Brillouin scattering (SBS) amplifier. The low power beam is directed through the same cell in the opposite direction. The majority of the amplification takes place at the focus which is the fourier transform plane of the mask image. The small holes occupy large area at the focus and thus are preferentially amplified. The amplified output is now imaged onto the multichip module where the holes are drilled. Because of the fourier plane amplifier, only about 1/10th the power of a competitive system is needed. This concept allows less expensive masks to be used in the process and requires much less laser power. 1 fig.

  18. Fourier plane image amplifier

    DOEpatents

    Hackel, Lloyd A.; Hermann, Mark R.; Dane, C. Brent; Tiszauer, Detlev H.

    1995-01-01

    A solid state laser is frequency tripled to 0.3 .mu.m. A small portion of the laser is split off and generates a Stokes seed in a low power oscillator. The low power output passes through a mask with the appropriate hole pattern. Meanwhile, the bulk of the laser output is focused into a larger stimulated Brillouin scattering (SBS) amplifier. The low power beam is directed through the same cell in the opposite direction. The majority of the amplification takes place at the focus which is the fourier transform plane of the mask image. The small holes occupy large area at the focus and thus are preferentially amplified. The amplified output is now imaged onto the multichip module where the holes are drilled. Because of the fourier plane amplifier, only .about.1/10th the power of a competitive system is needed. This concept allows less expensive masks to be used in the process and requires much less laser power.

  19. Imaging Fourier Transform Spectrometer

    SciTech Connect

    Bennett, C.L.; Carter, M.R.; Fields, D.J.; Hernandez, J.

    1993-04-14

    The operating principles of an Imaging Fourier Transform Spectrometer (IFTS) are discussed. The advantages and disadvantages of such instruments with respect to alternative imaging spectrometers are discussed. The primary advantages of the IFTS are the capacity to acquire more than an order of magnitude more spectral channels than alternative systems with more than an order of magnitude greater etendue than for alternative systems. The primary disadvantage of IFTS, or FTS in general, is the sensitivity to temporal fluctuations, either random or periodic. Data from the IRIFTS (ir IFTS) prototype instrument, sensitive in the infrared, are presented having a spectral sensitivity of 0.01 absorbance units, a spectral resolution of 6 cm{sup {minus}1} over the range 0 to 7899 cm{sup {minus}1}, and a spatial resolution of 2.5 mr.

  20. Electro-optic imaging Fourier transform spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin (Inventor); Znod, Hanying (Inventor)

    2009-01-01

    An Electro-Optic Imaging Fourier Transform Spectrometer (EOIFTS) for Hyperspectral Imaging is described. The EOIFTS includes an input polarizer, an output polarizer, and a plurality of birefringent phase elements. The relative orientations of the polarizers and birefringent phase elements can be changed mechanically or via a controller, using ferroelectric liquid crystals, to substantially measure the spectral Fourier components of light propagating through the EIOFTS. When achromatic switches are used as an integral part of the birefringent phase elements, the EIOFTS becomes suitable for broadband applications, with over 1 micron infrared bandwidth.

  1. Electro-optic Imaging Fourier Transform Spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin

    2005-01-01

    JPL is developing an innovative compact, low mass, Electro-Optic Imaging Fourier Transform Spectrometer (E-O IFTS) for hyperspectral imaging applications. The spectral region of this spectrometer will be 1 - 2.5 micron (1000-4000/cm) to allow high-resolution, high-speed hyperspectral imaging applications. One application will be the remote sensing of the measurement of a large number of different atmospheric gases simultaneously in the same airmass. Due to the use of a combination of birefringent phase retarders and multiple achromatic phase switches to achieve phase delay, this spectrometer is capable of hyperspectral measurements similar to that of the conventional Fourier transform spectrometer but without any moving parts. In this paper, the principle of operations, system architecture and recent experimental progress will be presented.

  2. Electro-optic Imaging Fourier Transform Spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin

    2005-01-01

    JPL is developing an innovative compact, low mass, Electro-Optic Imaging Fourier Transform Spectrometer (E-0IFTS) for hyperspectral imaging applications. The spectral region of this spectrometer will be 1 - 2.5 pm (1000 -4000 cm-') to allow high-resolution, high-speed hyperspectral imaging applications [l-51. One application will be theremote sensing of the measurement of a large number of different atmospheric gases simultaneously in the sameairmass. Due to the use of a combination of birefiingent phase retarders and multiple achromatic phase switches toachieve phase delay, this spectrometer is capable of hyperspectral measurements similar to that of the conventionalFourier transform spectrometer but without any moving parts. In this paper, the principle of operations, systemarchitecture and recent experimental progress will be presen.

  3. Optical image-hiding method with false information disclosure based on the interference principle and partial-phase-truncation in the fractional Fourier domain

    NASA Astrophysics Data System (ADS)

    Dai, Chaoqing; Wang, Xiaogang; Zhou, Guoquan; Chen, Junlang

    2014-05-01

    An image-hiding method based on the optical interference principle and partial-phase-truncation in the fractional Fourier domain is proposed. The primary image is converted into three phase-only masks (POMs) using an analytical algorithm involved partial-phase-truncation and a fast random pixel exchange process. A procedure of a fake silhouette for a decryption key is suggested to reinforce the encryption and give a hint of the position of the key. The fractional orders of FrFT effectively enhance the security of the system. In the decryption process, the POM with false information and the other two POMs are, respectively, placed in the input and fractional Fourier planes to recover the primary image. There are no unintended information disclosures and iterative computations involved in the proposed method. Simulation results are presented to verify the validity of the proposed approach.

  4. Fourier phase microscopy with white light

    PubMed Central

    Bhaduri, Basanta; Tangella, Krishnarao; Popescu, Gabriel

    2013-01-01

    Laser-based Fourier phase microscopy (FPM) works on the principle of decomposition of an image field in two spatial components that can be controllably shifted in phase with respect to each other. However, due to the coherent illumination, the contrast in phase images is degraded by speckles. In this paper we present FPM with spatially coherent white light (wFPM), which offers high spatial phase sensitivity due to the low temporal coherence and high temporal phase stability due to common path geometry. Further, by using a fast spatial light modulator (SLM) and a fast scientific-grade complementary metal oxide semiconductor (sCMOS) camera, we report imaging at a maximum rate of 12.5 quantitative phase frames per second with 5.5 mega pixels image size. We illustrate the utility of wFPM as a contrast enhancement as well as dynamic phase measurement method by imaging section of benign colonic glands and red blood cell membrane fluctuation. PMID:24010005

  5. Color image registration based on quaternion Fourier transformation

    NASA Astrophysics Data System (ADS)

    Wang, Qiang; Wang, Zhengzhi

    2012-05-01

    The traditional Fourier Mellin transform is applied to quaternion algebra in order to investigate quaternion Fourier transformation properties useful for color image registration in frequency domain. Combining with the quaternion phase correlation, we propose a method for color image registration based on the quaternion Fourier transform. The registration method, which processes color image in a holistic manner, is convenient to realign color images differing in translation, rotation, and scaling. Experimental results on different types of color images indicate that the proposed method not only obtains high accuracy in similarity transform in the image plane but also is computationally efficient.

  6. Color image projection based on Fourier holograms.

    PubMed

    Makowski, Michal; Ducin, Izabela; Sypek, Maciej; Siemion, Agnieszka; Siemion, Andrzej; Suszek, Jaroslaw; Kolodziejczyk, Andrzej

    2010-04-15

    A method of color image projection is experimentally validated. It assumes a simultaneous illumination of a spatial light modulator (SLM) with three laser beams converging in a common point on a projection screen. The beams are masked with amplitude filters so that each one illuminates one third of the area of the SLM. A Fourier hologram of a chosen color component of an input image is calculated, and its phase pattern is addressed on a corresponding part of the SLM area. A full-color flat image is formed on the screen as a result of color mixing. Additional techniques of image optimization are applied: time-integral speckle averaging and an off-axis shift of a zero-order peak. Static and animated experimental results of such a color holographic projection with a good image quality are presented.

  7. Imaging vibration of the cochlear partition of an excised guinea pig cochlea using phase-sensitive Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Choudhury, Niloy; Zeng, Yaguang; Fridberger, Anders; Chen, Fangyi; Zha, Dingjun; Nuttall, Alfred L.; Wang, Ruikang K.

    2011-03-01

    Studying the sound stimulated vibrations of various membranes that form the complex structure of the organ of Corti in the cochlea of the inner ear is essential for understanding how the travelling sound wave of the basilar membrane couples its energy to the organ structures. In this paper we report the feasibility of using phase-sensitive Fourier domain optical coherence tomography (FD-OCT) to image the vibration of various micro-structures of the cochlea at the same time. An excised cochlea of a guinea pig was stimulated using sounds at various frequencies and vibration image was obtained. When measuring the apex area, vibration signal from different turns, which have different best response frequencies are obtained in the same image. The method has the potential to measure the response from a much wider region of the cochlea than any other currently used method. The noise floor for vibration image for the system at 200 Hz was ~0.3nm.

  8. Efficient single pixel imaging in Fourier space

    NASA Astrophysics Data System (ADS)

    Bian, Liheng; Suo, Jinli; Hu, Xuemei; Chen, Feng; Dai, Qionghai

    2016-08-01

    Single pixel imaging (SPI) is a novel technique capturing 2D images using a bucket detector with a high signal-to-noise ratio, wide spectrum range and low cost. Conventional SPI projects random illumination patterns to randomly and uniformly sample the entire scene’s information. Determined by Nyquist sampling theory, SPI needs either numerous projections or high computation cost to reconstruct the target scene, especially for high-resolution cases. To address this issue, we propose an efficient single pixel imaging technique (eSPI), which instead projects sinusoidal patterns for importance sampling of the target scene’s spatial spectrum in Fourier space. Specifically, utilizing the centrosymmetric conjugation and sparsity priors of natural images’ spatial spectra, eSPI sequentially projects two \\tfrac{π }{2}-phase-shifted sinusoidal patterns to obtain each Fourier coefficient in the most informative spatial frequency bands. eSPI can reduce requisite patterns by two orders of magnitude compared to conventional SPI, which helps a lot for fast and high-resolution SPI.

  9. Gas-phase plume from laser-irradiated fiberglass-reinforced polymers via imaging fourier transform spectroscopy.

    PubMed

    Acosta, Roberto I; Gross, Kevin C; Perram, Glen P; Johnson, Shane M; Dao, Ly; Medina, David F; Roybal, Robert; Black, Paul

    2014-01-01

    Emissive plumes from laser-irradiated fiberglass-reinforced polymers (FRP) were investigated using a mid-infrared imaging Fourier transform spectrometer, operating at fast framing rates (50 kHz imagery and 2.5 Hz hyperspectral imagery) with adequate spatial (0.81 mm(2) per pixel) and spectral resolution (2 cm(-1)). Fiberglass-reinforced polymer targets were irradiated with a 1064 nm continuous wave neodymium-doped yttrium aluminum garnet (Nd:YAG) laser for 60 s at 100 W in air. Strong emissions from H(2)O, CO, CO(2), and hydrocarbons were observed between 1800 and 5000 cm(-1). A single-layer radiative transfer model was developed for the spectral region from 2000 to 2400 cm(-1) to estimate spatial maps of temperature and column densities of CO and CO(2) from the hyperspectral imagery. The spectral model was used to compute the absorption cross sections of CO and CO(2) using spectral line parameters from the high-temperature extension of the HITRAN. The analysis of pre-combustion spectra yields effective temperatures rising from ambient to 1200 K and suddenly increasing to 1515 K upon combustion. The peak signal-to-noise ratio for a single spectrum exceeds 60:1, enabling temperature and column density determinations with low statistical error. For example, the spectral analysis for a single pixel within a single frame yields an effective temperature of 1019 ± 6 K, and CO and CO(2) column densities of 1.14 ± 0.05 and 1.11 ± 0.03 × 10(18) molec/cm(2), respectively. Systematic errors associated with the radiative transfer model dominate, yielding effective temperatures with uncertainties of >100 K and column densities to within a factor of 2-3. Hydrocarbon emission at 2800 to 3200 cm(-1) is well correlated with CO column density. PMID:25014838

  10. Fourier analysis of blood plasma laser images phase maps in the diagnosis of cancer in human organs

    NASA Astrophysics Data System (ADS)

    Angelsky, P. O.; Kushnerick, L. Ya.; Bachinskiy, V. T.; Vanchuliak, O. Ya.; Garazdiuk, M.; Pashkovska, N. V.; Andriychuk, D.

    2013-12-01

    A method of polarization mapping of the optico-anisotropic polycrystalline networks of the blood plasma albumin and globulin proteins with adjusted spatial-frequency filtering of the coordinate distributions of the azimuth and ellipticity of the polarization of laser radiation in the Fourier plane is proposed and substantiated. Comparative studies of the effectiveness of direct methods of mapping and a spatial-frequency selection in differentiating polarization azimuth and ellipticity maps of the field of laser radiation converted by the networks of albumin - globulin crystals of the blood plasma in healthy people and patients with prostate cancer have been carried out.

  11. Fourier transform infrared imaging of bone.

    PubMed

    Paschalis, Eleftherios P

    2012-01-01

    Fourier transform infrared imaging (FTIRI) is a technique that can be used to analyze the material properties of bone using tissue sections. In this chapter I describe the basic principles of FTIR and the methods for capturing and analyzing FTIR images in bone sections.

  12. Livermore Imaging Fourier Transform Infrared Spectrometer (LIFTIRS)

    SciTech Connect

    Carter, M.R.; Bennett, C.L.; Fields, D.J.; Lee, F.D.

    1995-05-10

    Lawrence Livermore National Laboratory is currently operating a hyperspectral imager, the Livermore Imaging Fourier Transform Infrared Spectrometer (LIFTIRS). This instrument is capable of operating throughout the infrared spectrum from 3 to 12.5 {mu}m with controllable spectral resolution. In this presentation we report on it`s operating characteristics, current capabilities, data throughput and calibration issues.

  13. Fourier Transform and Reflective Imaging Pyrometry

    SciTech Connect

    Stevens, G. D.

    2011-07-01

    A stationary Fourier transform pyrometer was used to record mid-wavelength IR spectra in dynamic shock experiments. The gated-IR camera used with this system was also used to record images of light produced and light reflected from shocked metals in order to constrain the dynamic emissivity and provide temperature estimates. This technique will be referred to as reflective imaging pyrometry.

  14. Phase information in coherent Fourier scatterometry

    NASA Astrophysics Data System (ADS)

    Kumar, N.; El Gawhary, O.; Roy, S.; Pereira, S. F.; Urbach, H. P.

    2013-04-01

    Incoherent Optical Scatterometry (IOS) is widely used in semiconductor industry in applications related to optical metrology particularly in grating reconstruction. Recently, Coherent Fourier Scatterometry (CFS) has emerged as a strong alternative to the traditional IOS under suitable condition. When available, phase information is an added advantage in CFS to complement the intensity data. Phase information in the scattered far field is dependent on the structure and the composition of the grating. We derive and discuss the phase information accessible through the CFS. Phase difference between the diffracted orders is computed and the polarization dependent phase sensitivity of the grating parameters are discussed. The results are rigorously simulated and an experimental implementation of CFS demonstrates the functionality of the method.

  15. Image processing and the Arithmetic Fourier Transform

    SciTech Connect

    Tufts, D.W.; Fan, Z.; Cao, Z.

    1989-01-01

    A new Fourier technique, the Arithmetic Fourier Transform (AFT) was recently developed for signal processing. This approach is based on the number-theoretic method of Mobius inversion. The AFT needs only additions except for a small amount of multiplications by prescribed scale factors. This new algorithm is also well suited to parallel processing. And there is no accumulation of rounding errors in the AFT algorithm. In this reprint, the AFT is used to compute the discrete cosine transform and is also extended to 2-D cases for image processing. A 2-D Mobius inversion formula is proved. It is then applied to the computation of Fourier coefficients of a periodic 2-D function. It is shown that the output of an array of delay-line (or transversal) filters is the Mobius transform of the input harmonic terms. The 2-D Fourier coefficients can therefore be obtained through Mobius inversion of the output of the filter array.

  16. Fourier analysis: from cloaking to imaging

    NASA Astrophysics Data System (ADS)

    Wu, Kedi; Cheng, Qiluan; Wang, Guo Ping

    2016-04-01

    Regarding invisibility cloaks as an optical imaging system, we present a Fourier approach to analytically unify both Pendry cloaks and complementary media-based invisibility cloaks into one kind of cloak. By synthesizing different transfer functions, we can construct different devices to realize a series of interesting functions such as hiding objects (events), creating illusions, and performing perfect imaging. In this article, we give a brief review on recent works of applying Fourier approach to analysis invisibility cloaks and optical imaging through scattering layers. We show that, to construct devices to conceal an object, no constructive materials with extreme properties are required, making most, if not all, of the above functions realizable by using naturally occurring materials. As instances, we experimentally verify a method of directionally hiding distant objects and create illusions by using all-dielectric materials, and further demonstrate a non-invasive method of imaging objects completely hidden by scattering layers.

  17. Optical image encryption by random shifting in fractional Fourier domains.

    PubMed

    Hennelly, B; Sheridan, J T

    2003-02-15

    A number of methods have recently been proposed in the literature for the encryption of two-dimensional information by use of optical systems based on the fractional Fourier transform. Typically, these methods require random phase screen keys for decrypting the data, which must be stored at the receiver and must be carefully aligned with the received encrypted data. A new technique based on a random shifting, or jigsaw, algorithm is proposed. This method does not require the use of phase keys. The image is encrypted by juxtaposition of sections of the image in fractional Fourier domains. The new method has been compared with existing methods and shows comparable or superior robustness to blind decryption. Optical implementation is discussed, and the sensitivity of the various encryption keys to blind decryption is examined.

  18. Fast 3D shape measurement using Fourier transform profilometry without phase unwrapping

    NASA Astrophysics Data System (ADS)

    Song, Kechen; Hu, Shaopeng; Wen, Xin; Yan, Yunhui

    2016-09-01

    This paper presents a novel, simple, yet fast 3D shape measurement method using Fourier transform profilometry. Different from the conventional Fourier transform profilometry, this proposed method introduces the binocular stereo vision and employs two image pairs (i.e., original image pairs and fringe image pairs) to restructure 3D shape. In this proposed method, instead of phase unwrapping algorithm, a coarse disparity map is adopted as a constraint condition to realize phase matching using wrapped phase. Since the local phase matching and sub-pixel disparity refinement are proposed to obtain high measuring accuracy, high-quality phase is not required. The validity of the proposed method is verified by experiments.

  19. Theory of Fourier phase within the framework of Fourier-domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Uttam, Shikhar; Liu, Yang

    2016-03-01

    Fourier phase in Fourier-domain optical coherence tomography (FD-OCT) has been shown to estimate the sub- resolution change in the optical depth location of a strong interface in refractive index profile of a sample using spectral-domain phase microscopy (SDPM), a derivative of FD-OCT. From first principles we show that in general Fourier phase not only estimates this sub-resolution change but also the mean spatial frequency of the coherence-gated refractive index, and both SDPM and depth-resolved spatial-domain low-coherence quantitative phase microscopy (dr-SLQPM) are special cases of this general theory. We also show that for spectral source with infinite bandwidth Fourier phase is zero. We provide analytical expressions and numerical simulations to support our results.

  20. Fourier transform digital holographic adaptive optics imaging system

    PubMed Central

    Liu, Changgeng; Yu, Xiao; Kim, Myung K.

    2013-01-01

    A Fourier transform digital holographic adaptive optics imaging system and its basic principles are proposed. The CCD is put at the exact Fourier transform plane of the pupil of the eye lens. The spherical curvature introduced by the optics except the eye lens itself is eliminated. The CCD is also at image plane of the target. The point-spread function of the system is directly recorded, making it easier to determine the correct guide-star hologram. Also, the light signal will be stronger at the CCD, especially for phase-aberration sensing. Numerical propagation is avoided. The sensor aperture has nothing to do with the resolution and the possibility of using low coherence or incoherent illumination is opened. The system becomes more efficient and flexible. Although it is intended for ophthalmic use, it also shows potential application in microscopy. The robustness and feasibility of this compact system are demonstrated by simulations and experiments using scattering objects. PMID:23262541

  1. Single beam Fourier transform digital holographic quantitative phase microscopy

    SciTech Connect

    Anand, A. Chhaniwal, V. K.; Mahajan, S.; Trivedi, V.; Faridian, A.; Pedrini, G.; Osten, W.; Dubey, S. K.; Javidi, B.

    2014-03-10

    Quantitative phase contrast microscopy reveals thickness or height information of a biological or technical micro-object under investigation. The information obtained from this process provides a means to study their dynamics. Digital holographic (DH) microscopy is one of the most used, state of the art single-shot quantitative techniques for three dimensional imaging of living cells. Conventional off axis DH microscopy directly provides phase contrast images of the objects. However, this process requires two separate beams and their ratio adjustment for high contrast interference fringes. Also the use of two separate beams may make the system more vulnerable to vibrations. Single beam techniques can overcome these hurdles while remaining compact as well. Here, we describe the development of a single beam DH microscope providing whole field imaging of micro-objects. A hologram of the magnified object projected on to a diffuser co-located with a pinhole is recorded with the use of a commercially available diode laser and an arrayed sensor. A Fourier transform of the recorded hologram directly yields the complex amplitude at the image plane. The method proposed was investigated using various phase objects. It was also used to image the dynamics of human red blood cells in which sub-micrometer level thickness variation were measurable.

  2. Generalized Fourier analysis for phase retrieval of fringe pattern.

    PubMed

    Zhong, Jingang; Weng, Jiawen

    2010-12-20

    A generalized Fourier analysis, by use of an adaptive multiscale windowed Fourier transform (AWFT), has been presented for the phase retrieval of fringe patterns. The Fourier transform method can be considered as a special case of AWFT method with a maximum window. The instantaneous frequency of the local signal is introduced to estimate whether the condition for separating the first spectrum component is satisfied for the phase retrieval of fringe patterns. The adaptive window width for this algorithm is determined by the length of the local stationary fringe pattern in order to balance the frequency and space resolution. The local stationary length of fringe pattern is defined as the signal satisfying the condition that whose first spectrum component is separated from all the other spectra within the local spatial area. In comparison with Fourier transform, fixed windowed Fourier transform and wavelet transform in numerical simulation and experiment, the adaptive multiscale windowed Fourier transform can present more accurate results of phase retrieval.

  3. Fourier Phase Domain Steganography: Phase Bin Encoding Via Interpolation

    NASA Astrophysics Data System (ADS)

    Rivas, Edward

    2007-04-01

    In recent years there has been an increased interest in audio steganography and watermarking. This is due primarily to two reasons. First, an acute need to improve our national security capabilities in light of terrorist and criminal activity has driven new ideas and experimentation. Secondly, the explosive proliferation of digital media has forced the music industry to rethink how they will protect their intellectual property. Various techniques have been implemented but the phase domain remains a fertile ground for improvement due to the relative robustness to many types of distortion and immunity to the Human Auditory System. A new method for embedding data in the phase domain of the Discrete Fourier Transform of an audio signal is proposed. Focus is given to robustness and low perceptibility, while maintaining a relatively high capacity rate of up to 172 bits/s.

  4. Fourier Analysis and Structure Determination. Part II: Pulse NMR and NMR Imaging.

    ERIC Educational Resources Information Center

    Chesick, John P.

    1989-01-01

    Uses simple pulse NMR experiments to discuss Fourier transforms. Studies the generation of spin echoes used in the imaging procedure. Shows that pulse NMR experiments give signals that are additions of sinusoids of differing amplitudes, frequencies, and phases. (MVL)

  5. Imaging Fourier transform spectrometry of chemical plumes

    NASA Astrophysics Data System (ADS)

    Bradley, Kenneth C.; Gross, Kevin C.; Perram, Glen P.

    2009-05-01

    A midwave infrared (MWIR) imaging Fourier transform spectrometer (FTS), the Telops FIRST-MWE (Field-portable Imaging Radiometric Spectrometer Technology - Midwave Extended) has been utilized for the standoff detection and characterization of chemical plumes. Successful collection and analysis of MWIR hyperspectral imagery of jet engine exhaust has allowed us to produce spatial profiles of both temperature and chemical constituent concentrations of exhaust plumes. Successful characterization of this high temperature combustion event has led to the collection and analysis of hyperspectral imagery of lower temperature emissions from industrial smokestacks. This paper presents MWIR data from remote collection of hyperspectral imagery of methyl salicilate (MeS), a chemical warfare agent simulant, during the Chemical Biological Distributed Early Warning System (CBDEWS) test at Dugway Proving Grounds, UT in 2008. The data did not contain spectral lines associated with emission of MeS. However, a few broad spectral features were present in the background-subtracted plume spectra. Further analysis will be required to assign these features, and determine the utility of MWIR hyperspectral imagery for analysis of chemical warfare agent plumes.

  6. Optical imaging process based on two-dimensional Fourier transform for synthetic aperture imaging ladar

    NASA Astrophysics Data System (ADS)

    Sun, Zhiwei; Zhi, Ya'nan; Liu, Liren; Sun, Jianfeng; Zhou, Yu; Hou, Peipei

    2013-09-01

    The synthetic aperture imaging ladar (SAIL) systems typically generate large amounts of data difficult to compress with digital method. This paper presents an optical SAIL processor based on compensation of quadratic phase of echo in azimuth direction and two dimensional Fourier transform. The optical processor mainly consists of one phase-only liquid crystal spatial modulator(LCSLM) to load the phase data of target echo and one cylindrical lens to compensate the quadratic phase and one spherical lens to fulfill the task of two dimensional Fourier transform. We show the imaging processing result of practical target echo obtained by a synthetic aperture imaging ladar demonstrator. The optical processor is compact and lightweight and could provide inherent parallel and the speed-of-light computing capability, it has a promising application future especially in onboard and satellite borne SAIL systems.

  7. Adaptive chirp-Fourier transform for chirp estimation with applications in ISAR imaging of maneuvering targets

    NASA Astrophysics Data System (ADS)

    Xia, Xiang-Gen; Wang, Genyuan; Chen, Victor C.

    2001-03-01

    This paper first reviews some basic properties of the discrete chirp-Fourier transform and then present an adaptive chirp- Fourier transform, a generalization of the amplitude and phase estimation of sinusoids (APES) algorithm proposed by Li and Stoica for sinusoidal signals. We finally applied it to the ISAR imaging of maneuvering targets.

  8. Multifunctional metasurface lens for imaging and Fourier transform

    NASA Astrophysics Data System (ADS)

    Wen, Dandan; Yue, Fuyong; Ardron, Marcus; Chen, Xianzhong

    2016-06-01

    A metasurface can manipulate light in a desirable manner by imparting local and space-variant abrupt phase change. Benefiting from such an unprecedented capability, the conventional concept of what constitutes an optical lens continues to evolve. Ultrathin optical metasurface lenses have been demonstrated based on various nanoantennas such as V-shape structures, nanorods and nanoslits. A single device that can integrate two different types of lenses and polarities is desirable for system integration and device miniaturization. We experimentally demonstrate such an ultrathin metasurface lens that can function either as a spherical lens or a cylindrical lens, depending on the helicity of the incident light. Helicity-controllable focal line and focal point in the real focal plane, as well as imaging and 1D/2D Fourier transforms, are observed on the same lens. Our work provides a unique tool for polarization imaging, image processing and particle trapping.

  9. Multifunctional metasurface lens for imaging and Fourier transform.

    PubMed

    Wen, Dandan; Yue, Fuyong; Ardron, Marcus; Chen, Xianzhong

    2016-01-01

    A metasurface can manipulate light in a desirable manner by imparting local and space-variant abrupt phase change. Benefiting from such an unprecedented capability, the conventional concept of what constitutes an optical lens continues to evolve. Ultrathin optical metasurface lenses have been demonstrated based on various nanoantennas such as V-shape structures, nanorods and nanoslits. A single device that can integrate two different types of lenses and polarities is desirable for system integration and device miniaturization. We experimentally demonstrate such an ultrathin metasurface lens that can function either as a spherical lens or a cylindrical lens, depending on the helicity of the incident light. Helicity-controllable focal line and focal point in the real focal plane, as well as imaging and 1D/2D Fourier transforms, are observed on the same lens. Our work provides a unique tool for polarization imaging, image processing and particle trapping. PMID:27272601

  10. Multifunctional metasurface lens for imaging and Fourier transform

    PubMed Central

    Wen, Dandan; Yue, Fuyong; Ardron, Marcus; Chen, Xianzhong

    2016-01-01

    A metasurface can manipulate light in a desirable manner by imparting local and space-variant abrupt phase change. Benefiting from such an unprecedented capability, the conventional concept of what constitutes an optical lens continues to evolve. Ultrathin optical metasurface lenses have been demonstrated based on various nanoantennas such as V-shape structures, nanorods and nanoslits. A single device that can integrate two different types of lenses and polarities is desirable for system integration and device miniaturization. We experimentally demonstrate such an ultrathin metasurface lens that can function either as a spherical lens or a cylindrical lens, depending on the helicity of the incident light. Helicity-controllable focal line and focal point in the real focal plane, as well as imaging and 1D/2D Fourier transforms, are observed on the same lens. Our work provides a unique tool for polarization imaging, image processing and particle trapping. PMID:27272601

  11. Fourier-Transform Ghost Imaging with Hard X Rays.

    PubMed

    Yu, Hong; Lu, Ronghua; Han, Shensheng; Xie, Honglan; Du, Guohao; Xiao, Tiqiao; Zhu, Daming

    2016-09-01

    Knowledge gained through x-ray crystallography fostered structural determination of materials and greatly facilitated the development of modern science and technology in the past century. However, it is only applied to crystalline structures and cannot resolve noncrystalline materials. Here we demonstrate a novel lensless Fourier-transform ghost imaging method with pseudothermal hard x rays that extends x-ray crystallography to noncrystalline samples. By measuring the second-order intensity correlation function of the light, Fourier-transform diffraction pattern of a complex amplitude sample is achieved at the Fresnel region in our experiment and the amplitude and phase distributions of the sample in the spatial domain are retrieved successfully. For the first time, ghost imaging is experimentally realized with x rays. Since a highly coherent x-ray source is not required, the method can be implemented with laboratory x-ray sources and it also provides a potential solution for lensless diffraction imaging with fermions, such as neutrons and electrons where intensive coherent sources usually are not available.

  12. Fourier-Transform Ghost Imaging with Hard X Rays

    NASA Astrophysics Data System (ADS)

    Yu, Hong; Lu, Ronghua; Han, Shensheng; Xie, Honglan; Du, Guohao; Xiao, Tiqiao; Zhu, Daming

    2016-09-01

    Knowledge gained through x-ray crystallography fostered structural determination of materials and greatly facilitated the development of modern science and technology in the past century. However, it is only applied to crystalline structures and cannot resolve noncrystalline materials. Here we demonstrate a novel lensless Fourier-transform ghost imaging method with pseudothermal hard x rays that extends x-ray crystallography to noncrystalline samples. By measuring the second-order intensity correlation function of the light, Fourier-transform diffraction pattern of a complex amplitude sample is achieved at the Fresnel region in our experiment and the amplitude and phase distributions of the sample in the spatial domain are retrieved successfully. For the first time, ghost imaging is experimentally realized with x rays. Since a highly coherent x-ray source is not required, the method can be implemented with laboratory x-ray sources and it also provides a potential solution for lensless diffraction imaging with fermions, such as neutrons and electrons where intensive coherent sources usually are not available.

  13. Fourier-Transform Ghost Imaging with Hard X Rays.

    PubMed

    Yu, Hong; Lu, Ronghua; Han, Shensheng; Xie, Honglan; Du, Guohao; Xiao, Tiqiao; Zhu, Daming

    2016-09-01

    Knowledge gained through x-ray crystallography fostered structural determination of materials and greatly facilitated the development of modern science and technology in the past century. However, it is only applied to crystalline structures and cannot resolve noncrystalline materials. Here we demonstrate a novel lensless Fourier-transform ghost imaging method with pseudothermal hard x rays that extends x-ray crystallography to noncrystalline samples. By measuring the second-order intensity correlation function of the light, Fourier-transform diffraction pattern of a complex amplitude sample is achieved at the Fresnel region in our experiment and the amplitude and phase distributions of the sample in the spatial domain are retrieved successfully. For the first time, ghost imaging is experimentally realized with x rays. Since a highly coherent x-ray source is not required, the method can be implemented with laboratory x-ray sources and it also provides a potential solution for lensless diffraction imaging with fermions, such as neutrons and electrons where intensive coherent sources usually are not available. PMID:27661686

  14. Operation of a deformable mirror device as a Fourier plane phase modulating filter

    NASA Technical Reports Server (NTRS)

    Florence, James M.; Giles, Michael K.; Smith, Jeffery Z.

    1988-01-01

    The operation of a deformable mirror device (DMD) as a Fourier plane phase modulating filter is described. An analysis of the optical characteristics of the DMD elements as phase modulators is summarized. Analytical and experimental results indicating the existence of a quasi-phase-only operational mode are presented. These results are used to specify the mirror deflection required to implement a binary phase-only image correlation operation. An optical correlator system is implemented using the DMD Fourier plane filter and experimental results from this system are compared with computer simulations of the correlator operation.

  15. Calibration of the Geostationary Imaging Fourier Transform Spectrometer (GIFTS)

    NASA Technical Reports Server (NTRS)

    Best, F. A.; Revercomb, H. E.; Bingham, G. E.; Knuteson, R. O.; Tobin, D. C.; LaPorte, D. D.; Smith, W. L.

    2001-01-01

    The NASA New Millennium Program's Geostationary Imaging Fourier Transform Spectrometer (GIFTS) requires highly accurate radiometric and spectral calibration in order to carry out its mission to provide water vapor, wind, temperature, and trace gas profiling from geostationary orbit. A calibration concept has been developed for the GIFTS Phase A instrument design. The in-flight calibration is performed using views of two on-board blackbody sources along with cold space. A radiometric calibration uncertainty analysis has been developed and used to show that the expected performance for GIFTS exceeds its top level requirement to measure brightness temperature to better than 1 K. For the Phase A GIFTS design, the spectral calibration is established by the highly stable diode laser used as the reference for interferogram sampling, and verified with comparisons to atmospheric calculations.

  16. Imaging Fourier Transform Spectroscopy from a Space Based Platform -- The Herschel/SPIRE Fourier Transform Spectrometer

    NASA Astrophysics Data System (ADS)

    Spencer, Locke Dean

    The Herschel Space Observatory (Herschel), a flagship mission of the European Space Agency (ESA), is comprised of three cryogenically cooled instruments commissioned to explore the far-infrared/submillimetre universe. Herschel's remote orbit at the second Lagrangian point (L2) of the Sun-Earth system, and its cryogenic payload, impose a need for thorough instrument characterization and rigorous testing as there will be no possibility for any servicing after launch. The Spectral and Photometric Imaging Receiver (SPIRE) is one of the instrument payloads aboard Herschel and consists of a three band imaging photometer and a two band imaging spectrometer. The imaging spectrometer on SPIRE consists of a Mach-Zehnder (MZ)-Fourier transform spectrometer (FTS) coupled with bolometric detector arrays to form an imaging FTS (IFTS). This thesis presents experiments conducted to verify the performance of an IFTS system from a space based platform, Le. the use of the SPIRE IFTS within the Herschel space observatory. Prior to launch, the SPIRE instrument has undergone a series of performance verification tests conducted at the Rutherford Appleton Laboratory (RAL) near Oxford, UK. Canada is involved in the SPIRE project through provision of instrument development hardware and software, mission flight software, and support personnel. Through this thesis project I have been stationed at RAL for a period spanning fifteen months to participate in the development, performance verification, and characterization of both the SPIRE FTS and photometer instruments. This thesis discusses Fourier transform spectroscopy and related FTS data processing (Chapter 2). Detailed discussions are included on the spectral phase related to the FTS beamsplitter (Chapter 3), the imaging aspects of the SPIRE IFTS instrument (Chapter 4), and the noise characteristics of the SPIRE bolometer detector arrays as measured using the SPIRE IFTS (Chapter 5). This thesis presents results from experiments performed

  17. Fourier transform infrared (FT-IR) spectroscopy and imaging of the nucleus to characterize DNA contributions in different phases of the cell cycle

    NASA Astrophysics Data System (ADS)

    Tiwari, Saumya; Zong, Xinying; Holton, Sarah E.; Prasanth, K. V.; Bhargava, Rohit

    2015-03-01

    Determination of neoplasia is largely dependent on the state of cell growth. Infrared (IR) spectroscopy has the potential to measure differences between normal and cancerous cells. When analyzing biopsy sections using IR spectroscopy, careful analyses become important since biochemical variations may be misinterpreted due to variations in cell cycle. Processes like DNA replication, transcription and translation to produce proteins are important in determining if the cells are actively dividing but no studies on this aspect using IR spectroscopy have been conducted on isolated cell nuclei. Nuclei hold critical information about the phase of cell and its capacity to divide, but IR spectra of nuclei are often confounded by cytoplasmic signals during data acquisition from intact cells and tissues. Therefore, we sought to separate nuclear signals from cytoplasmic signals and identify spectral differences that characterize different phases of the cell cycle. Both cells and isolated nuclei were analyzed to assess the effect of the cytoplasmic background and to identify spectral changes in nuclei in different phases of cell cycle. We observed that signals of DNA could be obtained when imaging nuclei isolated from cells in different phases of cell cycle, which is in contrast to the oft-cited case in cells wherein nuclear contributions are obscured. The differences across cell cycle phases were more pronounced in nucleic acid regions of the spectra, showing that the use of nuclear spectrum can provide additional information on cellular state. These results can aid in developing computational models that extract nuclear spectra from whole cells and tissues for more accurate assessment of biochemical variations.

  18. Fast Fourier transformation resampling algorithm and its application in satellite image processing

    NASA Astrophysics Data System (ADS)

    Li, Zhenping

    2014-01-01

    The image resampling algorithm, fast Fourier transformation resampling (FFTR), is introduced. The FFTR uses a global function in the Fourier expansion form to represent an image, and the image resampling is achieved by the introduction of a phase shift in the Fourier expansion. The comparison with the cubic spline interpolation approach in the image resampling is presented, which shows that FFTR is more accurate in the satellite image resampling. The FFTR algorithm is also generally reversible, because both the resampled and its original images share the same Fourier spectrum. The resampling for the images with hot spots is discussed. The hot spots in an image are the pixels with the second-order derivatives that are order of magnitude larger than the average value. The images with the hot spots are resampled with the introduction of a local Gaussian function to model the hot spot data, so that the remaining data for the Fourier expansion are continuous. Its application to the infrared channel image of Geostationary Operational Environmental Satellite Imager, to mitigate a diurnally changing band co-registration, is presented.

  19. Fourier domain OCT imaging of American cockroach nervous system

    NASA Astrophysics Data System (ADS)

    Wyszkowska, Joanna; Gorczynska, Iwona; Ruminski, Daniel; Karnowski, Karol; Kowalczyk, Andrzej; Stankiewicz, Maria; Wojtkowski, Maciej

    2012-01-01

    In this pilot study we demonstrate results of structural Fourier domain OCT imaging of the nervous system of Periplaneta americana L. (American cockroach). The purpose of this research is to develop an OCT apparatus enabling structural imaging of insect neural system. Secondary purpose of the presented research is to develop methods of the sample preparation and handling during the OCT imaging experiments. We have performed imaging in the abdominal nerve cord excised from the American cockroach. For this purpose we have developed a Fourier domain / spectral OCT system operating at 820 nm wavelength range.

  20. Image recovery from double amplitudes in fractional Fourier domain

    NASA Astrophysics Data System (ADS)

    Liao, Tian-He; Gao, Qiong

    2006-02-01

    The classical Gerchberg-Saxton algorithm is introduced into the image recovery in fractional Fourier domain after adaptation. When this algorithm is applied directly, its performance is good for smoothed image, but bad for unsmoothed image. Based on the diversity of fractional Fourier transform on its orders, this paper suggests a novel iterative algorithm, which extracts the information of the original image from amplitudes of its fractional Fourier transform at two orders. This new algorithm consists of two independent Gerchberg-Saxton procedures and an averaging operation in each circle. Numerical simulations are carried out to show its validity for both smoothed and unsmoothed images with most pairs of orders in the interval [0, 1].

  1. Geosynchronous Imaging Fourier Transform Spectrometer (GIFTS): Imaging and Tracking Capability

    NASA Technical Reports Server (NTRS)

    Zhou, D. K.; Larar, A. M.; Liu, Xu; Reisse, R. A.; Smith, W. L.; Revercomb, H. E.; Bingham, G. E.; Zollinger, L. J.; Tansock, J. J.; Huppi, Ronald J.

    2007-01-01

    The geosynchronous-imaging Fourier transform spectrometer (GIFTS) engineering demonstration unit (EDU) is an imaging infrared spectrometer designed for atmospheric soundings. It measures the infrared spectrum in two spectral bands (14.6 to 8.8 microns, 6.0 to 4.4 microns) using two 128 128 detector arrays with a spectral resolution of 0.57/cm with a scan duration of approx. 11 seconds. From a geosynchronous orbit, the instrument will have the capability of taking successive measurements of such data to scan desired regions of the globe, from which atmospheric status, cloud parameters, wind field profiles, and other derived products can be retrieved. The GIFTS EDU provides a flexible and accurate testbed for the new challenges of the emerging hyperspectral era. The EDU ground-based measurement experiment, held in Logan, Utah during September 2006, demonstrated its extensive capabilities and potential for geosynchronous and other applications (e.g., Earth observing environmental measurements). This paper addresses the experiment objectives and overall performance of the sensor system with a focus on the GIFTS EDU imaging capability and proof of the GIFTS measurement concept.

  2. Fractional Fourier transform in temporal ghost imaging with classical light

    SciTech Connect

    Setaelae, Tero; Shirai, Tomohiro; Friberg, Ari T.

    2010-10-15

    We investigate temporal, second-order classical ghost imaging with long, incoherent, scalar plane-wave pulses. We prove that in rather general conditions, the intensity correlation function at the output of the setup is given by the fractional Fourier transform of the temporal object. In special cases, the correlation function is shown to reduce to the ordinary Fourier transform and the temporal image of the object. Effects influencing the visibility and the resolution are considered. This work extends certain known results on spatial ghost imaging into the time domain and could find applications in temporal tomography of pulses.

  3. Formation of Fourier phase shifts in the solar Ni I 6768 A line

    NASA Technical Reports Server (NTRS)

    Jones, Harrison P.

    1989-01-01

    A formalism is developed to understand better how Doppler shifts of spectrum lines as inferred from phase shifts in the Fourier transforms of line profiles are related to the underlying velocity structures which they are intended to measure. With a standard model atmosphere and a simplified, quasi-LTE treatment of line formation, the formalism is applied to the Ni I 6768 A line, which has been selected for use with a network of imaging interferometers under development by the Global Oscillations Network Group for research in helioseismology. Fourier phase shifts are found to be a remarkably linear measure of velocity even in the presence of gradients and unresolved lateral variations in the assumed velocity field. An assumed outward increase in amplitude of a model oscillatory velocity is noticeably reflected in the center-to-limb behavior of the simulated velocity measure, and a sample model of solar granulation is found to have a strong influence on the formation of the Fourier phase.

  4. Theoretical study of Fourier-transform acousto-optic imaging.

    PubMed

    Barjean, Kinia; Ramaz, François; Tualle, Jean-Michel

    2016-05-01

    We propose a full theoretical study of Fourier-transform acousto-optic imaging, which we recently introduced and experimentally assessed in [Opt. Lett.40, 705-708 (2015)OPLEDP0146-959210.1364/OL.40.000705] as an alternative to achieve axial resolution in acousto-optic imaging with a higher signal-to-noise ratio. PMID:27140883

  5. Electro-Optical Imaging Fourier-Transform Spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin; Zhou, Hanying

    2006-01-01

    An electro-optical (E-O) imaging Fourier-transform spectrometer (IFTS), now under development, is a prototype of improved imaging spectrometers to be used for hyperspectral imaging, especially in the infrared spectral region. Unlike both imaging and non-imaging traditional Fourier-transform spectrometers, the E-O IFTS does not contain any moving parts. Elimination of the moving parts and the associated actuator mechanisms and supporting structures would increase reliability while enabling reductions in size and mass, relative to traditional Fourier-transform spectrometers that offer equivalent capabilities. Elimination of moving parts would also eliminate the vibrations caused by the motions of those parts. Figure 1 schematically depicts a traditional Fourier-transform spectrometer, wherein a critical time delay is varied by translating one the mirrors of a Michelson interferometer. The time-dependent optical output is a periodic representation of the input spectrum. Data characterizing the input spectrum are generated through fast-Fourier-transform (FFT) post-processing of the output in conjunction with the varying time delay.

  6. Asymmetric multiple-image encryption based on the cascaded fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Li, Yanbin; Zhang, Feng; Li, Yuanchao; Tao, Ran

    2015-09-01

    A multiple-image cryptosystem is proposed based on the cascaded fractional Fourier transform. During an encryption procedure, each of the original images is directly separated into two phase masks. A portion of the masks is subsequently modulated into an interim mask, which is encrypted into the ciphertext image; the others are used as the encryption keys. Using phase truncation in the fractional Fourier domain, one can use an asymmetric cryptosystem to produce a real-valued noise-like ciphertext, while a legal user can reconstruct all of the original images using a different group of phase masks. The encryption key is an indivisible part of the corresponding original image and is still useful during decryption. The proposed system has high resistance to various potential attacks, including the chosen-plaintext attack. Numerical simulations also demonstrate the security and feasibility of the proposed scheme.

  7. Diagnostic ultrasound tooth imaging using fractional Fourier transform.

    PubMed

    Harput, Sevan; Evans, Tony; Bubb, Nigel; Freear, Steven

    2011-10-01

    An ultrasound contact imaging method is proposed to measure the enamel thickness in the human tooth. A delay-line transducer with a working frequency of 15 MHz is chosen to achieve a minimum resolvable distance of 400 μm in human enamel. To confirm the contact between the tooth and the transducer, a verification technique based on the phase shift upon reflection is used. Because of the high attenuation in human teeth, linear frequency-modulated chirp excitation and pulse compression are exploited to increase the penetration depth and improve the SNR. Preliminary measurements show that the enamel-dentin boundary creates numerous internal reflections, which cause the applied chirp signals to interfere arbitrarily. In this work, the fractional Fourier transform (FrFT) is employed for the first time in dental imaging to separate chirp signals overlapping in both time and frequency domains. The overlapped chirps are compressed using the FrFT and matched filter techniques. Micro-computed tomography is used for validation of the ultrasound measurements for both techniques. For a human molar, the thickness of the enamel layer is measured with an average error of 5.5% after compressing with the FrFT and 13.4% after compressing with the matched filter based on the average speed of sound in human teeth.

  8. Optical color image hiding scheme by using Gerchberg-Saxton algorithm in fractional Fourier domain

    NASA Astrophysics Data System (ADS)

    Chen, Hang; Du, Xiaoping; Liu, Zhengjun; Yang, Chengwei

    2015-03-01

    We proposed an optical color image hiding algorithm based on Gerchberg-Saxton retrieval algorithm in fractional Fourier domain. The RGB components of the color image are converted into a scrambled image by using 3D Arnold transform before the hiding operation simultaneously and these changed images are regarded as the amplitude of fractional Fourier spectrum. Subsequently the unknown phase functions in fractional Fourier domain are calculated by the retrieval algorithm, in which the host RBG components are the part of amplitude of the input functions. The 3D Arnold transform is performed with different parameters to enhance the security of the hiding and extracting algorithm. Some numerical simulations are made to test the validity and capability of the proposed color hiding encryption algorithm.

  9. Construction of a Fourier-transform phase-modulation fluorometer

    NASA Astrophysics Data System (ADS)

    Iwata, Tetsuo; Shibata, Hironobu; Araki, Tsutomu

    2005-11-01

    We have constructed a Fourier-transform phase-modulation fluorometer (FT-PMF) by which a fluorescence decay waveform can be obtained. In the FT-PMF, the modulation frequency of the excitation light source is swept continuously from a direct current (dc) to a high frequency fmax with a time duration T. The resultant fluorescence signal waveform is Fourier transformed to obtain its amplitude and phase spectra. The ratio of the amplitude spectrum and the difference of the phase spectrum over those of the reference spectra from an excitation waveform are calculated, respectively, and the pair of both spectral data is inverse-Fourier-transformed again to obtain the fluorescence decay waveform. The light source used was an ultraviolet light-emitting diode (UV LED) whose operating condition was fmax = 50-120 MHz and T = 10 µs. To demonstrate the performance of the FT-PMF, we carried out (1) the measurement of a fluorescent decay waveform of YAG materials enclosed in a white LED and (2) determinations of fluorescence lifetimes of 10 ppm quinine sulfate in 0.1 N H2SO4 and 10 ppm rhodamine 6G in ethanol.

  10. Construction of a Fourier-transform phase-modulation fluorometer

    NASA Astrophysics Data System (ADS)

    Shibata, Hironobu; Iwata, Tetsuo

    2005-12-01

    We have constructed a Fourier-transform phase-modulation fluorometer (FT-PMF) by which a fluorescence decay waveform can be obtained. In the FT-PMF, the modulation frequency of the excitation light source is swept continuously from a direct current (dc) to a high frequency f max with a time duration T. The resultant fluorescence signal waveform is Fourier-transformed to obtain its amplitude and phase spectra. The ratio of the amplitude spectrum and the difference of the phase spectrum over those of the reference spectra that are obtained from a non-fluorescent material are calculated, respectively, and the pair of both spectral data is inverse-Fourier-transformed again to obtain the fluorescence decay waveform. The light source used was an ultraviolet light emitting- diode (UV LED) whose typical operating condition was f max = 100 MHz and T = 10 μs. To demonstrate the performance of the FT-PMF, we carried out (1) measurement of a fluorescent decay waveform of YAG materials packed in a white LED, and (2) determination of fluorescence lifetime of 10 ppm quinine sulfate in 0.1N H IISO 4.

  11. Fourier Power Spectrum Characteristics of Face Photographs: Attractiveness Perception Depends on Low-Level Image Properties

    PubMed Central

    Langner, Oliver; Wiese, Holger; Redies, Christoph

    2015-01-01

    We investigated whether low-level processed image properties that are shared by natural scenes and artworks – but not veridical face photographs – affect the perception of facial attractiveness and age. Specifically, we considered the slope of the radially averaged Fourier power spectrum in a log-log plot. This slope is a measure of the distribution of special frequency power in an image. Images of natural scenes and artworks possess – compared to face images – a relatively shallow slope (i.e., increased high spatial frequency power). Since aesthetic perception might be based on the efficient processing of images with natural scene statistics, we assumed that the perception of facial attractiveness might also be affected by these properties. We calculated Fourier slope and other beauty-associated measurements in face images and correlated them with ratings of attractiveness and age of the depicted persons (Study 1). We found that Fourier slope – in contrast to the other tested image properties – did not predict attractiveness ratings when we controlled for age. In Study 2A, we overlaid face images with random-phase patterns with different statistics. Patterns with a slope similar to those in natural scenes and artworks resulted in lower attractiveness and higher age ratings. In Studies 2B and 2C, we directly manipulated the Fourier slope of face images and found that images with shallower slopes were rated as more attractive. Additionally, attractiveness of unaltered faces was affected by the Fourier slope of a random-phase background (Study 3). Faces in front of backgrounds with statistics similar to natural scenes and faces were rated as more attractive. We conclude that facial attractiveness ratings are affected by specific image properties. An explanation might be the efficient coding hypothesis. PMID:25835539

  12. 2D hexagonal quaternion Fourier transform in color image processing

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.; Agaian, Sos S.

    2016-05-01

    In this paper, we present a novel concept of the quaternion discrete Fourier transform on the two-dimensional hexagonal lattice, which we call the two-dimensional hexagonal quaternion discrete Fourier transform (2-D HQDFT). The concept of the right-side 2D HQDFT is described and the left-side 2-D HQDFT is similarly considered. To calculate the transform, the image on the hexagonal lattice is described in the tensor representation when the image is presented by a set of 1-D signals, or splitting-signals which can be separately processed in the frequency domain. The 2-D HQDFT can be calculated by a set of 1-D quaternion discrete Fourier transforms (QDFT) of the splitting-signals.

  13. Fourier-ring descriptor to characterize rare circulating cells from images generated using immunofluorescence microscopy.

    PubMed

    Emerson, Tegan; Kirby, Michael; Bethel, Kelly; Kolatkar, Anand; Luttgen, Madelyn; O'Hara, Stephen; Newton, Paul; Kuhn, Peter

    2015-03-01

    We address the problem of subclassification of rare circulating cells using data driven feature selection from images of candidate circulating tumor cells from patients diagnosed with breast, prostate, or lung cancer. We determine a set of low level features which can differentiate among candidate cell types. We have implemented an image representation based on concentric Fourier rings (FRDs) which allow us to exploit size variations and morphological differences among cells while being rotationally invariant. We discuss potential clinical use in the context of treatment monitoring for cancer patients with metastatic disease.

  14. Visible Imaging Fourier Transform Spectrometer: Design and Calibration

    SciTech Connect

    Wishnow, E H; Wurtz, R; Blais-Ouellette, S; Cook, K H; Carr, D; Lewis, I; Grandmont, F; Stubbs, C W

    2002-09-19

    We present details of the design, operation and calibration of an astronomical visible-band imaging Fourier transform spectrometer (IFTS). This type of instrument produces a spectrum for every pixel in the field of view where the spectral resolution is flexible. The instrument is a dual-input/dual-output Michelson interferometer coupled to the 3.5 meter telescope at the Apache Point Observatory. Imaging performance and interferograms and spectra from calibration sources and standard stars are discussed.

  15. Encoding plaintext by Fourier transform hologram in double random phase encoding using fingerprint keys

    NASA Astrophysics Data System (ADS)

    Takeda, Masafumi; Nakano, Kazuya; Suzuki, Hiroyuki; Yamaguchi, Masahiro

    2012-09-01

    It has been shown that biometric information can be used as a cipher key for binary data encryption by applying double random phase encoding. In such methods, binary data are encoded in a bit pattern image, and the decrypted image becomes a plain image when the key is genuine; otherwise, decrypted images become random images. In some cases, images decrypted by imposters may not be fully random, such that the blurred bit pattern can be partially observed. In this paper, we propose a novel bit coding method based on a Fourier transform hologram, which makes images decrypted by imposters more random. Computer experiments confirm that the method increases the randomness of images decrypted by imposters while keeping the false rejection rate as low as in the conventional method.

  16. 360-degrees profilometry using strip-light projection coupled to Fourier phase-demodulation.

    PubMed

    Servin, Manuel; Padilla, Moises; Garnica, Guillermo

    2016-01-11

    360 degrees (360°) digitalization of three dimensional (3D) solids using a projected light-strip is a well-established technique in academic and commercial profilometers. These profilometers project a light-strip over the digitizing solid while the solid is rotated a full revolution or 360-degrees. Then, a computer program typically extracts the centroid of this light-strip, and by triangulation one obtains the shape of the solid. Here instead of using intensity-based light-strip centroid estimation, we propose to use Fourier phase-demodulation for 360° solid digitalization. The advantage of Fourier demodulation over strip-centroid estimation is that the accuracy of phase-demodulation linearly-increases with the fringe density, while in strip-light the centroid-estimation errors are independent. Here we proposed first to construct a carrier-frequency fringe-pattern by closely adding the individual light-strip images recorded while the solid is being rotated. Next, this high-density fringe-pattern is phase-demodulated using the standard Fourier technique. To test the feasibility of this Fourier demodulation approach, we have digitized two solids with increasing topographic complexity: a Rubik's cube and a plastic model of a human-skull. According to our results, phase demodulation based on the Fourier technique is less noisy than triangulation based on centroid light-strip estimation. Moreover, Fourier demodulation also provides the amplitude of the analytic signal which is a valuable information for the visualization of surface details. PMID:26832248

  17. Fourier transform infrared phase shift cavity ring down spectrometer

    NASA Astrophysics Data System (ADS)

    Schundler, Elizabeth; Mansur, David J.; Vaillancourt, Robert; Benedict-Gill, Ryan; Newbry, Scott P.; Engel, James R.; Rentz Dupuis, Julia

    2013-05-01

    We report on our current status towards the development of a prototype Fourier transform infrared phase shift cavity ring down spectrometer (FTIR-PS-CRDS) system under a U.S. EPA SBIR contract. Our system uses the inherent wavelength-dependent modulation imposed by the FTIR on a broadband thermal source for the phase shift measurement. This spectrally-dependent phase shift is proportional to the spectrally-dependent ring down time, which is proportional to the losses of the cavity including those due to molecular absorption. Our approach is a broadband and spectral range enhancement to conventional CRDS which is typically done in the near IR at a single wavelength; at the same time our approach is a sensitivity enhancement to traditional FTIR owing to the long effective path of the resonant cavity. In this paper we present a summary of the theory including performance projections and the design details of the prototype FTIR-PS-CRDS system.

  18. A study of geometric phase topology using Fourier transform method

    NASA Astrophysics Data System (ADS)

    Samlan, C. T.; Naik, Dinesh N.; Viswanathan, Nirmal K.

    2016-07-01

    Topological aspect of the geometric phase (GP) due to pure polarization projection is studied using the 2D Fourier transform (2D-FT) method. Projection of orthogonal polarization state results in a phase singularity in the 2D parameter space of ellipticity and orientation of polarization ellipse. Projection of its surrounding states results in an accumulation of GP in different amount that form a spiral structure. A half wave plate-quarter wave plate combination is used to generate different polarization states which are projected using a polarizer. The accumulated phase for each orientation of the wave plate is extracted from 2D-FT of the interferogram, obtained by interfering it with a reference beam in a Mach-Zehnder like interferometer.

  19. Birefringent Fourier transform imaging spectrometer with a rotating retroreflector.

    PubMed

    Bai, Caixun; Li, Jianxin; Shen, Yan; Zhou, Jianqiang

    2016-08-01

    A birefringent Fourier transform imaging spectrometer with a new lateral shearing interferometer is presented. The interferometer includes a Wollaston prism and a retroreflector. It splits an incident light beam into two shearing parallel parts to obtain interference fringe patterns of an imaging target, which is well established as an aid in reducing problems associated with optical alignment and manufacturing precision. Continuously rotating the retroreflector enables the spectrometer to acquire two-dimensional spectral images without spatial scanning. This technology, with a high work efficiency and low complexity, is inherently compact and robust. The effectiveness of the proposed method is demonstrated by the experimental results. PMID:27472640

  20. Birefringent Fourier transform imaging spectrometer with a rotating retroreflector.

    PubMed

    Bai, Caixun; Li, Jianxin; Shen, Yan; Zhou, Jianqiang

    2016-08-01

    A birefringent Fourier transform imaging spectrometer with a new lateral shearing interferometer is presented. The interferometer includes a Wollaston prism and a retroreflector. It splits an incident light beam into two shearing parallel parts to obtain interference fringe patterns of an imaging target, which is well established as an aid in reducing problems associated with optical alignment and manufacturing precision. Continuously rotating the retroreflector enables the spectrometer to acquire two-dimensional spectral images without spatial scanning. This technology, with a high work efficiency and low complexity, is inherently compact and robust. The effectiveness of the proposed method is demonstrated by the experimental results.

  1. Infrared small target enhancement via phase spectrum of Quaternion Fourier Transform

    NASA Astrophysics Data System (ADS)

    Qi, Shengxiang; Ma, Jie; Li, Hang; Zhang, Shuiping; Tian, Jinwen

    2014-01-01

    Small target enhancement is one of the crucial stages in infrared small target detection. In this paper, we propose a new method using phase spectrum of Quaternion Fourier Transform to enhance small targets while suppressing backgrounds for infrared images. This is inspired by the property that regularly Gaussian-like shape small targets could be considered as attractively salient signal in infrared images and the location information of such signal is implicitly contained in the phase spectrum from frequency domain. Formally, in the proposed method, we adopt the phase spectrum of Quaternion Fourier Transform instead of using traditional Fourier Transform to enhance the targets since the quaternion provides at most four data channels than only one for the latter, which could be helpful to broad types of background clutters by adding more information. For the construction of the quaternion, we present a second-order directional derivative filter via facet model to compute four second order directional derivative maps from four directions respectively as the four data channels. This filter is used to suppress noises and distinguish the targets and backgrounds into separably different textures so that it would boost the robustness of small target enhancement. In experiments, some typical infrared images with various scenes are tested to validate the effectiveness of the proposed method. The results demonstrate that our method actually has good performance and outperforms several state-of-the-art methods, which can be further used for infrared small target detection and tracking.

  2. Optimal color image restoration: Wiener filter and quaternion Fourier transform

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.; Agaian, Sos S.

    2015-03-01

    In this paper, we consider the model of quaternion signal degradation when the signal is convoluted and an additive noise is added. The classical model of such a model leads to the solution of the optimal Wiener filter, where the optimality with respect to the mean square error. The characteristic of this filter can be found in the frequency domain by using the Fourier transform. For quaternion signals, the inverse problem is complicated by the fact that the quaternion arithmetic is not commutative. The quaternion Fourier transform does not map the convolution to the operation of multiplication. In this paper, we analyze the linear model of the signal and image degradation with an additive independent noise and the optimal filtration of the signal and images in the frequency domain and in the quaternion space.

  3. Incubator embedded cell culture imaging system (EmSight) based on Fourier ptychographic microscopy.

    PubMed

    Kim, Jinho; Henley, Beverley M; Kim, Charlene H; Lester, Henry A; Yang, Changhuei

    2016-08-01

    Multi-day tracking of cells in culture systems can provide valuable information in bioscience experiments. We report the development of a cell culture imaging system, named EmSight, which incorporates multiple compact Fourier ptychographic microscopes with a standard multiwell imaging plate. The system is housed in an incubator and presently incorporates six microscopes. By using the same low magnification objective lenses as the objective and the tube lens, the EmSight is configured as a 1:1 imaging system that, providing large field-of-view (FOV) imaging onto a low-cost CMOS imaging sensor. The EmSight improves the image resolution by capturing a series of images of the sample at varying illumination angles; the instrument reconstructs a higher-resolution image by using the iterative Fourier ptychographic algorithm. In addition to providing high-resolution brightfield and phase imaging, the EmSight is also capable of fluorescence imaging at the native resolution of the objectives. We characterized the system using a phase Siemens star target, and show four-fold improved coherent resolution (synthetic NA of 0.42) and a depth of field of 0.2 mm. To conduct live, long-term dopaminergic neuron imaging, we cultured ventral midbrain from mice driving eGFP from the tyrosine hydroxylase promoter. The EmSight system tracks movements of dopaminergic neurons over a 21 day period. PMID:27570701

  4. Incubator embedded cell culture imaging system (EmSight) based on Fourier ptychographic microscopy

    PubMed Central

    Kim, Jinho; Henley, Beverley M.; Kim, Charlene H.; Lester, Henry A.; Yang, Changhuei

    2016-01-01

    Multi-day tracking of cells in culture systems can provide valuable information in bioscience experiments. We report the development of a cell culture imaging system, named EmSight, which incorporates multiple compact Fourier ptychographic microscopes with a standard multiwell imaging plate. The system is housed in an incubator and presently incorporates six microscopes. By using the same low magnification objective lenses as the objective and the tube lens, the EmSight is configured as a 1:1 imaging system that, providing large field-of-view (FOV) imaging onto a low-cost CMOS imaging sensor. The EmSight improves the image resolution by capturing a series of images of the sample at varying illumination angles; the instrument reconstructs a higher-resolution image by using the iterative Fourier ptychographic algorithm. In addition to providing high-resolution brightfield and phase imaging, the EmSight is also capable of fluorescence imaging at the native resolution of the objectives. We characterized the system using a phase Siemens star target, and show four-fold improved coherent resolution (synthetic NA of 0.42) and a depth of field of 0.2 mm. To conduct live, long-term dopaminergic neuron imaging, we cultured ventral midbrain from mice driving eGFP from the tyrosine hydroxylase promoter. The EmSight system tracks movements of dopaminergic neurons over a 21 day period. PMID:27570701

  5. Mesh adaptation technique for Fourier-domain fluorescence lifetime imaging

    SciTech Connect

    Soloviev, Vadim Y.

    2006-11-15

    A novel adaptive mesh technique in the Fourier domain is introduced for problems in fluorescence lifetime imaging. A dynamical adaptation of the three-dimensional scheme based on the finite volume formulation reduces computational time and balances the ill-posed nature of the inverse problem. Light propagation in the medium is modeled by the telegraph equation, while the lifetime reconstruction algorithm is derived from the Fredholm integral equation of the first kind. Stability and computational efficiency of the method are demonstrated by image reconstruction of two spherical fluorescent objects embedded in a tissue phantom.

  6. The use of Fourier reverse transforms in crystallographic phase refinement

    SciTech Connect

    Ringrose, S.

    1997-10-08

    Often a crystallographer obtains an electron density map which shows only part of the structure. In such cases, the phasing of the trial model is poor enough that the electron density map may show peaks in some of the atomic positions, but other atomic positions are not visible. There may also be extraneous peaks present which are not due to atomic positions. A method for determination of crystal structures that have resisted solution through normal crystallographic methods has been developed. PHASER is a series of FORTRAN programs which aids in the structure solution of poorly phased electron density maps by refining the crystallographic phases. It facilitates the refinement of such poorly phased electron density maps for difficult structures which might otherwise not be solvable. The trial model, which serves as the starting point for the phase refinement, may be acquired by several routes such as direct methods or Patterson methods. Modifications are made to the reverse transform process based on several assumptions. First, the starting electron density map is modified based on the fact that physically the electron density map must be non-negative at all points. In practice a small positive cutoff is used. A reverse Fourier transform is computed based on the modified electron density map. Secondly, the authors assume that a better electron density map will result by using the observed magnitudes of the structure factors combined with the phases calculated in the reverse transform. After convergence has been reached, more atomic positions and less extraneous peaks are observed in the refined electron density map. The starting model need not be very large to achieve success with PHASER; successful phase refinement has been achieved with a starting model that consists of only 5% of the total scattering power of the full molecule. The second part of the thesis discusses three crystal structure determinations.

  7. Closed fringe demodulation using phase decomposition by Fourier basis functions.

    PubMed

    Kulkarni, Rishikesh; Rastogi, Pramod

    2016-06-01

    We report a new technique for the demodulation of a closed fringe pattern by representing the phase as a weighted linear combination of a certain number of linearly independent Fourier basis functions in a given row/column at a time. A state space model is developed with the weights of the basis functions as the elements of the state vector. The iterative extended Kalman filter is effectively utilized for the robust estimation of the weights. A coarse estimate of the fringe density based on the fringe frequency map is used to determine the initial row/column to start with and subsequently the optimal number of basis functions. The performance of the proposed method is evaluated with several noisy fringe patterns. Experimental results are also reported to support the practical applicability of the proposed method. PMID:27409439

  8. Geometric phase analysis based on the windowed Fourier transform for the deformation field measurement

    NASA Astrophysics Data System (ADS)

    Dai, Xianglu; Xie, Huimin; Wang, Qinghua

    2014-06-01

    The geometric phase analysis (GPA), an important image-based deformation measurement method, has been used at both micro- and nano-scale. However, when a deformed image has apparent distortion, non-ignorable error in the obtained deformation field could occur by using this method. In this paper, the geometric phase analysis based on the windowed Fourier transform (WFT) is proposed to solve the above-mentioned issue, defined as the WFT-GPA method. In WFT-GPA, instead of the Fourier transform (FT), the WFT is utilized to extract the phase field block by block, and therefore more accurate local phase information can be acquired. The simulation tests, which include detailed discussion of influence factors for measurement accuracy such as window size and image noise, are conducted with digital deformed grids. The results verify that the WFT-GPA method not only keeps all advantages of traditional GPA method, but also owns a better accuracy for deformation measurement. Finally, the WFT-GPA method is applied to measure the machining distortion incurred in soft ultraviolet nanoimprint lithography (UV-NIL) process. The successful measurement shows the feasibility of this method and offers a full-field way for characterizing the replication quality of UV-NIL process.

  9. Integrated optics in an electrically scanned imaging Fourier transform spectrometer

    NASA Technical Reports Server (NTRS)

    Breckinridge, James B. (Inventor); Ocallaghan, Fred G. (Inventor)

    1982-01-01

    An efficient, lightweight and stable, Fourier transform spectrometer was developed. The mechanical slide mechanism needed to create a path difference was eliminated by the use of retro-reflecting mirrors in a monolithic interferometer assembly in which the mirrors are not at 90 degrees to the propagation vector of the radiation, but rather at a small angle. The resulting plane wave fronts create a double-sided inteferogram of the source irradiance distribution which is detected by a charge-coupled device image sensor array. The position of each CCD pixel in the array is an indication of the path difference between the two retro-reflecting mirrors in the monolithic optical structure. The Fourier transform of the signals generated by the image sensor provide the spectral irradiance distribution of the source. For imaging, the interferometer assembly scans the source of irradiation by moving the entire instrument, such as would occur if it was fixedly mounted to a moving platform, i.e., a spacecraft. During scanning, the entrace slot to the monolithic optical structure sends different pixels to corresponding interferograms detected by adjacent columns of pixels of the image sensor.

  10. Imaging the sun in hard x rays using Fourier telescopes

    NASA Technical Reports Server (NTRS)

    Campbell, J. W.

    1993-01-01

    For several years, solar flares have been observed with a variety of instruments confirming that tremendous amounts of energy are locally stored in the solar magnetic field and then rapidly released during the life of the flare. In concert with observations, theorists have attempted to describe the means by which these energetic events occur and evolve. Two competing theories have emerged and have stood the test of time. One theory describes the flare in terms of nonthermal, electron beam injection into a thick target while the other uses a thermal approach. Both theories provide results which are reasonably consistent with current observations; but to date, none have been able to provide conclusive evidence as to the validity of either model. Imaging on short time scales (1 s) and/or small size scales (1 arc s) should give definitive answers to these questions. In order to test whether a realistic telescope can indeed discriminate between models, we construct model sources based upon the thermal and the nonthermal models and calculate the emission as a function of time and energy in the range from 10 to 100 keV. In addition, we construct model telescopes representing both the spatial modulation collimator (SMC) and the rotating modulation collimator (RMC) techniques of observation using random photon counting statistics. With these two types of telescopes we numerically simulate the instrument response to the above two model flares to see if there are distinct x-ray signatures which may be discernable. We find that theoretical descriptions of the primary models of solar flares do indeed predict different hard x-ray signatures for 1 sec time scales and at 1-5 arc sec spatial resolution. However, these distinguishing signatures can best be observed early in the impulsive phase and from a position perpendicular to the plane of the loop. Furthermore, we find that Fourier telescopes with reasonable and currently attainable design characteristics can image these

  11. Fourier transform infrared phase shift cavity ring down spectrometer

    NASA Astrophysics Data System (ADS)

    Schundler, Elizabeth; Mansur, David J.; Vaillancourt, Robert; Benedict-Gill, Ryan; Newbry, Scott P.; Engel, James R.; Dupuis, Julia Rentz

    2014-05-01

    OPTRA has developed a Fourier transform infrared phase shift cavity ring down spectrometer (FTIR-PS-CRDS) system under a U.S. EPA SBIR contract. This system uses the inherent wavelength-dependent modulation imposed by the FTIR on a broadband thermal source for the phase shift measurement. This spectrally-dependent phase shift is proportional to the spectrally-dependent ring down time. The spectral dependence of both of these values is introduced by the losses of the cavity including those due to the molecular absorption of the sample. OPTRA's approach allows broadband detection of chemicals across the feature-rich fingerprint region of the long-wave infrared. This represents a broadband and spectral range enhancement to conventional CRDS which is typically done at a single wavelength in the near IR; at the same time the approach is a sensitivity enhancement to traditional FTIR, owing to the long effective path of the resonant cavity. In previous papers1,2, OPTRA has presented a breadboard system aimed at demonstrating the feasibility of the approach and a prototype design implementing performance enhancements based on the results of breadboard testing. In this final paper in the series, we will present test results illustrating the realized performance of the fully assembled and integrated breadboard, thereby demonstrating the utility of the approach.

  12. Imaging Organ of Corti Vibration Using Fourier-Domain OCT

    NASA Astrophysics Data System (ADS)

    Choudhury, Niloy; Chen, Fangyi; Fridberger, Anders; Zha, Dingjun; Jacques, Steven L.; Wang, Ruikang K.; Nuttall, Alfred L.

    2011-11-01

    Measuring the sound stimulated vibration from various structures in the organ of Corti is important in understanding how the small vibrations are amplified and detected. In this study we examine the feasibility of using phase-sensitive Fourier domain optical coherence tomography (PSFD-OCT) to measure vibration of the cellular structures of the organ of Corti. PSFD-OCT is a low coherence interferrometry system where the interferrogram is detected as a function of wavelength. The phase of the Fourier transformation of the detected spectra contains path deference (between the sample arm and the reference arm) information of the interferometer. In PSFD-OCT this phase is measured as a function of time and thus any time dependent change in the path difference between the sample arm and the reference arm can be detected. In the experiment, we used an in vitro preparation of the guinea pig cochlea and made a surgical opening at the apical end to access the organ of Corti. By applying tones with different frequencies via the intact middle ear, we recorded the structural vibration inside the organ of Corti. Vibration amplitude and phase of different substructures were mapped on a cross-section view of the organ of Corti. Although the measurements were made at the apical turn of the cochlea, it will be possible to make vibration measurement from various turns of the cochlea. The noise floor of the system was 0.3 nm, calibrated using a piezo stack as a calibrator.

  13. Stages: sub-Fourier dynamic shim updating using nonlinear magnetic field phase preparation.

    PubMed

    Witschey, Walter R T; Littin, Sebastian; Cocosco, Chris A; Gallichan, Daniel; Schultz, Gerrit; Weber, Hans; Welz, Anna; Hennig, Jürgen; Zaitsev, Maxim

    2014-01-01

    Heterogeneity of the static magnetic field in magnetic resonance imaging may cause image artifacts and degradation in image quality. The field heterogeneity can be reduced by dynamically adjusting shim fields or dynamic shim updating, in which magnetic field homogeneity is optimized for each tomographic slice to improve image quality. A limitation of this approach is that a new magnetic field can be applied only once for each slice, otherwise image quality would improve somewhere to its detriment elsewhere in the slice. The motivation of this work is to overcome this limitation and develop a technique using nonlinear magnetic fields to dynamically shim the static magnetic field within a single Fourier-encoded volume or slice, called sub-Fourier dynamic shim updating. However, the nonlinear magnetic fields are not used as shim fields; instead, they impart a strong spatial dependence to the acquired MR signal by nonlinear phase preparation, which may be exploited to locally improve magnetic field homogeneity during acquisition. A theoretical description of the method is detailed, simulations and a proof-of-principle experiment are performed using a magnet coil with a known field geometry. The method is shown to remove artifacts associated with magnetic field homogeneity in balanced steady-state free-precession pulse sequences. We anticipate that this method will be useful to improve the quality of magnetic resonance images by removing deleterious artifacts associated with a heterogeneous static magnetic field.

  14. Fourier-processed images of dynamic lung function from list-mode data

    SciTech Connect

    Zubal, I.G.; Rowe, R.W.; Bizais, Y.; Susskind, H.; Bennett, G.W.; Brill, A.B.

    1983-01-01

    Time and volume correlated amplitude and phase images are computed from nuclear medical ventilation studies and for dynamic transmission scans of the lungs. This is made possible by a hardware interface and data acquisition system, developed in-house, allowing camera events and multiple ancillary physiological signals (including lung volume) to be acquired simultaneously in list mode. The first harmonic amplitude and phase images are constructed on an event by event basis. These are computed for both equal time and equal lung volume increments. Time and volume correlated Fourier images for ventilation studies have shown details and functional structures not usually seen in conventional imaging techniques. Processed transmission scans show similar results compared to ventilation images.

  15. Non-iterative determination of pattern phase in structured illumination microscopy using auto-correlations in Fourier space.

    PubMed

    Wicker, Kai

    2013-10-21

    The artefact-free reconstruction of structured illumination microscopy images requires precise knowledge of the pattern phases in the raw images. If this parameter cannot be controlled precisely enough in an experimental setup, the phases have to be determined a posteriori from the acquired data. While an iterative optimisation based on cross-correlations between individual Fourier images yields accurate results, it is rather time-consuming. Here I present a fast non-iterative technique which determines each pattern phase from an auto-correlation of the respective Fourier image. In addition to improving the speed of the reconstruction, simulations show that this method is also more robust, yielding errors of typically less than λ/500 under realistic signal-to-noise levels.

  16. Phase Contrast Imaging

    SciTech Connect

    Menk, Ralf Hendrik

    2008-11-13

    All standard (medical) x-ray imaging technologies, rely primarily on the amplitude properties of the incident radiation, and do not depend on its phase. This is unchanged since the discovery by Roentgen that the intensity of an x-ray beam, as measured by the exposure on a film, was related to the relative transmission properties of an object. However, recently various imaging techniques have emerged which depend on the phase of the x-rays as well as the amplitude. Phase becomes important when the beam is coherent and the imaging system is sensitive to interference phenomena. Significant new advances have been made in coherent optic theory and techniques, which now promise phase information in medical imaging. The development of perfect crystal optics and the increasing availability of synchrotron radiation facilities have contributed to a significant increase in the application of phase based imaging in materials and life sciences. Unique source characteristics such as high intensity, monochromaticity, coherence and high collimating provide an ideal source for advanced imaging. Phase contrast imaging has been applied in both projection and computed tomography modes, and recent applications have been made in the field of medical imaging. Due to the underlying principle of X-ray detection conventional image receptors register only intensities of wave fields and not their phases. During the last decade basically five different methods were developed that translate the phase information into intensity variations. These methods are based on measuring the phase shift {phi} directly (using interference phenomena), the gradient {nabla}{sub {phi}}, or the Laplacian {nabla}{sup 2}{phi}. All three methods can be applied to polychromatic X-ray sources keeping in mind that the native source is synchrotron radiation, featuring monochromatic and reasonable coherent X-ray beams. Due to the vast difference in the coefficients that are driven absorption and phase effects (factor 1

  17. Resonant Doppler imaging with Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Leitgeb, Rainer A.; Szklumowska, Anna; Pircher, Michael; Gotzinger, Erich; Fercher, Adolf F.

    2005-04-01

    Fourier Domain Optical Coherene Tomography (FD OCT) is a high speed imaging modality with increased sensitivity as compared to standard time domain (TD) OCT. The higher sensitivity is especially important, if strongly scattering tissue such as blood is investigated. Recently it could be shown that retinal blood flow can be assessed in-vivo by high speed FD OCT. However the detection bandwidth of color Doppler (CD) FDOCT is strongly limited due to blurring of the detected interference fringes during exposure. This leads to a loss of sensitivity for detection of fast changes in tissue. Using a moving mirror as a reference one can effectively increase the detection bandwidth for CD FDOCT and perform perfusion sectioning. The modality is called resonant CD FDOCT imaging. The principle of the method is presented and experimentally verified.

  18. Structure and dynamics of fluorescently labeled complex fluids by fourier imaging correlation spectroscopy

    PubMed

    Grassman; Knowles; Marcus

    2000-12-01

    We present a method of Fourier imaging correlation spectroscopy (FICS) that performs phase-sensitive measurements of modulated optical signals from fluorescently labeled complex fluids. FICS experiments probe the time-dependent trajectory of a spatial Fourier component of the fluid particle density at a specified wave number k, and provide a direct route to the intermediate scattering function. The FICS approach overcomes signal sensitivity problems associated with dynamic light scattering, while offering a means to acquire time-dependent information about spatial distributions of fluorescent particles, superior in efficiency to direct imaging methods. We describe the instrumental setup necessary to perform FICS experiments, and outline the theory that establishes the connection between FICS observables and statistical mechanical quantities describing liquid state dynamics. Test measurements on monolayer suspensions of rhodamine labeled polystyrene spheres are detailed.

  19. Reconstruction of magnetic domain structure using the reverse Monte Carlo method with an extended Fourier image

    PubMed Central

    Tokii, Maki; Kita, Eiji; Mitsumata, Chiharu; Ono, Kanta; Yanagihara, Hideto

    2015-01-01

    Visualization of the magnetic domain structure is indispensable to the investigation of magnetization processes and the coercivity mechanism. It is necessary to develop a reconstruction method from the reciprocal-space image to the real-space image. For this purpose, it is necessary to solve the problem of missing phase information in the reciprocal-space image. We propose the method of extend Fourier image with mean-value padding to compensate for the phase information. We visualized the magnetic domain structure using the Reverse Monte Carlo method with simulated annealing to accelerate the calculation. With this technique, we demonstrated the restoration of the magnetic domain structure, obtained magnetization and magnetic domain width, and reproduced the characteristic form that constitutes a magnetic domain. PMID:25991875

  20. Image registration under translation and rotation in two-dimensional planes using Fourier slice theorem.

    PubMed

    Pohit, M; Sharma, J

    2015-05-10

    Image recognition in the presence of both rotation and translation is a longstanding problem in correlation pattern recognition. Use of log polar transform gives a solution to this problem, but at a cost of losing the vital phase information from the image. The main objective of this paper is to develop an algorithm based on Fourier slice theorem for measuring the simultaneous rotation and translation of an object in a 2D plane. The algorithm is applicable for any arbitrary object shift for full 180° rotation.

  1. Research on algorithm for infrared hyperspectral imaging Fourier transform spectrometer technology

    NASA Astrophysics Data System (ADS)

    Wan, Lifang; Chen, Yan; Liao, Ningfang; Lv, Hang; He, Shufang; Li, Yasheng

    2015-08-01

    This paper reported the algorithm for Infrared Hyperspectral Imaging Radiometric Spectrometer Technology. Six different apodization functions are been used and compared, and the phase corrected technologies of Forman is researched and improved, fast fourier transform(FFT)is been used in this paper instead of the linear convolution to reduce the quantity of computation.The interferograms is achieved by the Infrared Hyperspectral Imaging Radiometric Spectrometer which are corrected and rebuilded by the improved algorithm, this algorithm reduce the noise and accelerate the computing speed with the higher accuracy of spectrometers.

  2. Chemical imaging with Fourier transform coherent anti-Stokes Raman scattering microscopy.

    PubMed

    Cui, Meng; Skodack, Joshua; Ogilvie, Jennifer P

    2008-11-01

    We report chemical imaging using Fourier transform coherent anti-Stokes Raman scattering (FTCARS) microscopy. Adding a passively phase-stable local field to amplify the weak FTCARS signal, we also demonstrate interferometric FTCARS microscopy, permitting reduced incident power to be used for imaging. We discuss signal-to-noise considerations and the conditions necessary to effectively suppress background noise, allowing FTCARS microscopy that is limited by the shot noise of the detector. We also discuss differences between the signal-to-noise obtainable by time and frequency domain coherent anti-Stokes Raman scattering (CARS) methods. PMID:19122721

  3. Continued Development of a Planetary Imaging Fourier Transform Spectrometer (PIFTS)

    NASA Technical Reports Server (NTRS)

    Sromovsky, L. A.

    2002-01-01

    This report describes continued efforts to evaluate a breadboard of a Planetary Imaging Fourier Transform Spectrometer (PIFTS). The PIFTS breadboard was developed under prior PIDDP funding. That effort is described in the final report for NASA Grant NAG5-6248 and in two conference papers (Sromovsky et al. 2000; Revercomb et al. 2000). The PIFTS breadboard was designed for near-IR (1-5.2 micrometer imaging of planetary targets with spectral resolving powers of several hundred to several thousand, using an InSb detector array providing at least 64x64 pixels imaging detail. The major focus of the development effort was to combine existing technologies to produce a small and low power design compatible with a very low mass flyable instrument. The objective of this grant (NAG5-10729) was further characterization of the breadboard performance, including intercomparisons with the highly accurate non-imaging Advanced Emitted Radiance Interferometer (AERI) (Revercomb et al. 1994; Best et al. 1997).

  4. Amplitude and phase fourier correlation of ``twin'' GC-spectra of fatty acids from sheep dairy

    NASA Astrophysics Data System (ADS)

    Teusdea, Alin C.; Gabor, Gianina; Hilma, Elena

    2012-08-01

    Authors present the discrimination performances of amplitude and phase-only Fourier correlation over the "twin" typed GC-spectra of sheep milk and ripened cheese. Therefore, in order to assess the most robust Fourier correlation method for the "twin" GC-spectra discrimination, the correlation matrix is built up over 17 analyzed GC-spectra in both amplitude and phase domains.

  5. Ghost imaging of phase objects with classical incoherent light

    SciTech Connect

    Shirai, Tomohiro; Setaelae, Tero; Friberg, Ari T.

    2011-10-15

    We describe an optical setup for performing spatial Fourier filtering in ghost imaging with classical incoherent light. This is achieved by a modification of the conventional geometry for lensless ghost imaging. It is shown on the basis of classical coherence theory that with this technique one can realize what we call phase-contrast ghost imaging to visualize pure phase objects.

  6. Fourier optics analysis of phase-mask-based path-length-multiplexed optical coherence tomography.

    PubMed

    Yin, Biwei; Dwelle, Jordan; Wang, Bingqing; Wang, Tianyi; Feldman, Marc D; Rylander, Henry G; Milner, Thomas E

    2015-11-01

    Optical coherence tomography (OCT) is an imaging technique that constructs a depth-resolved image by measuring the optical path-length difference between broadband light backscattered from a sample and a reference surface. For many OCT sample arm optical configurations, sample illumination and backscattered light detection share a common path. When a phase mask is placed in the sample path, features in the detected signal are observed, which suggests that an analysis of a generic common path OCT imaging system is warranted. In this study, we present a Fourier optics analysis using a Fresnel diffraction approximation of an OCT system with a path-length-multiplexing element (PME) inserted in the sample arm optics. The analysis may be generalized for most phase-mask-based OCT systems. A radial-angle-diverse PME is analyzed in detail, and the point spread function, coherent transfer function, sensitivity of backscattering angular diversity detection, and signal formation in terms of sample spatial frequency are simulated and discussed. The analysis reveals important imaging features and application limitations of OCT imaging systems with a phase mask in the sample path optics.

  7. Reconstruction of piecewise homogeneous images from partial knowledge of their Fourier Transform

    NASA Astrophysics Data System (ADS)

    Féron, Olivier; Chama, Zouaoui; Mohammad-Djafari, Ali

    2004-11-01

    Fourier synthesis (FS) inverse problem consists in reconstructing a multi-variable function from the measured data which correspond to partial and uncertain knowledge of its Fourier Transform (FT). By partial knowledge we mean either partial support and/or the knowledge of only the module and by uncertain we mean both uncertainty of the model and noisy data. This inverse problem arises in many applications such as : optical imaging, radio astronomy, magnetic resonance imaging (MRI) and diffraction scattering (ultrasounds or microwave imaging). Most classical methods of inversion are based on interpolation of the data and fast inverse FT. But when the data do not fill uniformly the Fourier domain or when the phase of the signal is lacking as in optical interferometry, the results obtained by such methods are not satisfactory, because these inverse problems are ill-posed. The Bayesian estimation approach, via an appropriate modeling of the unknown functions gives the possibility of compensating the lack of information in the data, thus giving satisfactory results. In this paper we study the case where the observations are a part of the FT modulus of objects which are composed of a few number of homogeneous materials. To model such objects we use a Hierarchical Hidden Markov Modeling (HMM) and propose a Bayesian inversion method using appropriate Markov Chain Monte Carlo (MCMC) algorithms.

  8. Optimized multiplexing super resolution imaging based on a Fourier ptychographic microscope

    NASA Astrophysics Data System (ADS)

    Sun, Jiasong; Chen, Qian; Zhang, Yuzhen; Zuo, Chao; Feng, Shijie; Hu, Yan; Zhang, Jialin

    2015-10-01

    Fourier ptychographic microscopy (FPM) is a recently developed super-resolution technique by using angularly varying illumination and a phase retrieval algorithm to surpass the diffraction limit of the objective lens. To be specific, FP captures a set of low-resolution (LR) images under angularly varying illuminations, and combines them into one high-resolution (HR) image in the Fourier domain. However, the long capturing process becomes an obvious limitation since there are large number of images need to be acquired. Furthermore, the time can be increased several times over in order to acquire high-dynamic range images. Utilizing the multiplexing principle, we propose an optimized multiplexing FP algorithm, which is highly efficient, to shorten the exposure time of each raw image in this work. High acquisition efficiency is achieved by employing two set of optimized multiplexing patterns for bright-field and dark-field imaging respectively. Experimental results demonstrated that this method could improve the quality of reconstructed HR intensity distributions in a faster measuring process.

  9. ULTRASOUND PULSE-ECHO IMAGING USING THE SPLIT-STEP FOURIER PROPAGATOR

    SciTech Connect

    HUANG, LIANJIE; QUAN, YOULI

    2007-01-31

    Ultrasonic reflection imaging has the potential to produce higher image resolution than transmission tomography, but imaging resolution and quality still need to be further improved for early cancer detection and diagnosis. We present an ultrasound reflection image reconstruction method using the split-step Fourier propagator. It is based on recursive inward continuation of ultrasonic wavefields in the frequency-space and frequency-wavenumber domains. The inward continuation within each extrapolation interval consists of two steps. In the first step, a phase-shift term is applied to the data in the frequency-wavenumber domain for propagation in a reference medium. The second step consists of applying another phase-shift term to data in the frequency-space domain to approximately compensate for ultrasonic scattering effects of heterogeneities within the breast. We use synthetic ultrasound pulse-echo data recorded around a ring for heterogeneous, computer-generated numerical breast phantoms to study the imaging capability of the method. The phantoms are derived from an experimental breast phantom and a sound-speed tomography image of an in-vivo ultrasound breast data collected usi ng a ring array. The heterogeneous sound-speed models used for pulse-echo imaging are obtained using a computationally efficient, first-arrival-time (time-of-flight) transmission tomography method. Our studies demonstrate that reflection image reconstruction using the split-step Fourier propagator with heterogeneous sound-speed models significantly improves image quality and resolution. We also numerically verify the spatial sampling criterion of wavefields for a ring transducer array.

  10. Fourier-based interpolation bias prediction in digital image correlation.

    PubMed

    Su, Yong; Zhang, Qingchuan; Gao, Zeren; Xu, Xiaohai; Wu, Xiaoping

    2015-07-27

    Based on the Fourier method, this paper deduces analytic formulae for interpolation bias in digital image correlation, explains the well-known sinusoidal-shaped curves of interpolation bias, and introduces the concept of interpolation bias kernel, which characterizes the frequency response of the interpolation bias and thus provides a measure of the subset matching quality of the interpolation algorithm. The interpolation bias kernel attributes the interpolation bias to aliasing effect of interpolation and indicates that high-frequency components are the major source of interpolation bias. Based on our theoretical results, a simple and effective interpolation bias prediction approach, which exploits the speckle spectrum and the interpolation transfer function, is proposed. Significant acceleration is attained, the effect of subset size is analyzed, and both numerical simulations and experimental results are found to agree with theoretical predictions. During the experiment, a novel experimental translation technique was developed that implements subpixel translation of a captured image through integer pixel translation on a computer screen. Owing to this remarkable technique, the influences of mechanical error and out-of-plane motion are eliminated, and complete interpolation bias curves as accurate as 0.01 pixel are attained by subpixel translation experiments.

  11. Imaging Fourier Transform Spectro-polarimetry in the Infrared

    NASA Astrophysics Data System (ADS)

    Jurgenson, C. A.; Stencel, R. E.; Stout, J.

    2004-12-01

    Imaging spectro-polarimetry has the capability to trace polarization changes in dust grains throughout an extended region of interest. An instrument that has the capability to achieve moderately high resolution (R = 2000 at 10 microns) via a stepping Fourier transform spectrometer, while preserving imaging polarimetry capabilities (TNTCAM2, Jurgenson et al. 2003), is set to achieve first light during early 2005. Motion control of the interferometer, as well as array control/readout is accomplished via an FPGA card programmed in LabVIEW(c). Mid-IR polarization studies are useful in approximating grain shapes and sizes in dusty environments. Correlation studies between mid and near-IR features can be used to test the core-mantle arrangement of grain growth. Polarization analysis is currently only possible between 8-13 microns, but the interferometer, as well as TNTCAM2, can operate at selected bandpasses in the near-IR region. A wire grid and waveplate would need to be purchased for work in the near-IR. Laboratory calibration results, both spectral and polarization, are reported. We are seeking collaborators in shared-risk science with this instrument, so please contact the authors if interested. Sigma Xi Grants In Aid of Research as well as the estate of William Herschel Womble provided funding for this endeavor.

  12. Fourier-series-based phase and amplitude optical field screen generator for weak atmospheric turbulence

    NASA Astrophysics Data System (ADS)

    Louthain, James A.; Welsh, Byron M.

    1998-09-01

    A new atmospheric screen generator is developed for use in performance calculations of adaptive optics and imaging systems. The generator is valid over a wide range of atmospheric turbulence parameters and incorporates both phase and amplitude effects. The new screen generator accounts for diffraction effects caused by turbulence and incorporates the phase, amplitude, and cross statistics of a weak turbulence model. The second order statistics of the phase and amplitude perturbations are based on the auto- correlation functions developed by Lee and Harp and the cross-correlation of the phase and amplitude perturbations derived in this paper. The correlations are derived by modeling the turbulence as a number of layers of randomly varying refractivity perpendicular to the propagation path. As the field propagates through the medium, diffraction occurs at each of the layers. A Fourier series expansion of the wavefront phase and amplitude is used. The screen generator uses the power and cross spectral densities of the phase and amplitude perturbations. The mean square value and the structure functions of the wavefront phase and amplitude are calculated in a Monte Carlo experiment and shown to be within 1% of the theoretical value.

  13. Opto-digital image encryption by using Baker mapping and 1-D fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Liu, Zhengjun; Li, She; Liu, Wei; Liu, Shutian

    2013-03-01

    We present an optical encryption method based on the Baker mapping in one-dimensional fractional Fourier transform (1D FrFT) domains. A thin cylinder lens is controlled by computer for implementing 1D FrFT at horizontal direction or vertical direction. The Baker mapping is introduced to scramble the amplitude distribution of complex function. The amplitude and phase of the output of encryption system are regarded as encrypted image and key. Numerical simulation has been performed for testing the validity of this encryption scheme.

  14. High-resolution microscopy with low-resolution objectives: correcting phase aberrations in Fourier ptychography

    NASA Astrophysics Data System (ADS)

    Konda, Pavan Chandra; Taylor, Jonathan M.; Harvey, Andrew R.

    2015-09-01

    The spatial resolution of a microscope is inversely proportionate to the sum of the objective numerical aperture (NA) and the illumination NA. Fourier Ptychography (FP) microscopy achieves high-resolution, wide-field imaging by the use of a low-NA, wide-field objective combined with time-sequential synthesis of high NA illumination using an array of LEDs. We describe reconstruction algorithms based on Fresnel propagation, rather than the traditional Fraunhofer propagation, which enables more accurate representation of LED illumination and hence reduced aberration in the image reconstruction. This also enables the new technique of Multi-Aperture Fourier Ptychography in the near-field. In this work the implementation of this algorithm is described together with some experimental results. The performance of this algorithm is validated by comparing to Fraunhofer based algorithm. More sophisticated update functions in the reconstruction procedures developed for FP are implemented with this algorithm and their performance is validated. The pupil phase can also be reconstructed during the reconstruction procedure hence allowing us to correct for the aberrations in the optical system without the need of any additional measurements.

  15. High-resolution wave-theory-based ultrasound reflection imaging using the split-step fourier and globally optimized fourier finite-difference methods

    DOEpatents

    Huang, Lianjie

    2013-10-29

    Methods for enhancing ultrasonic reflection imaging are taught utilizing a split-step Fourier propagator in which the reconstruction is based on recursive inward continuation of ultrasonic wavefields in the frequency-space and frequency-wave number domains. The inward continuation within each extrapolation interval consists of two steps. In the first step, a phase-shift term is applied to the data in the frequency-wave number domain for propagation in a reference medium. The second step consists of applying another phase-shift term to data in the frequency-space domain to approximately compensate for ultrasonic scattering effects of heterogeneities within the tissue being imaged (e.g., breast tissue). Results from various data input to the method indicate significant improvements are provided in both image quality and resolution.

  16. Palm-size wide-field Fourier spectroscopic imager with uncooled infrared microbolometer arrays for smartphone

    NASA Astrophysics Data System (ADS)

    Kawashima, Natsumi; Suzuki, Yo; Qi, Wei; Hosono, Satsuki; Saito, Tsubasa; Ogawa, Satoshi; Sato, Shun; Fujiwara, Masaru; Nishiyama, Akira; Wada, Kenji; Tanaka, Naotaka; Ishimaru, Ichiro

    2015-03-01

    We proposed the imaging-type 2-dimensional Fourier spectroscopy that is a near-common-path interferometer with strong robustness against mechanical vibrations. We introduced the miniature uncooled infrared microbolometer arrays for smartphone (e.g. product name: FILR ONE price: around 400USD). And we constructed the phase-shifter with the piezo impact drive mechanism (maker: Technohands.co.Ltd., stroke: 4.5mm, resolution: 0.01μm, size: 20mm, price: around 800USD). Thus, we realized the palm-size mid-infrared spectroscopic imager [size: L56mm×W69mm×H43mm weight: 500g]. And by using wide-angle lens as objective lens, the proposed method can obtain the wide-field 2- dimensional middle-infrared (wavelength: 7.5-13.5[μm]) spectroscopic imaging of radiation lights emitted from human bodies itself

  17. Spatial Phase Imaging

    NASA Technical Reports Server (NTRS)

    2006-01-01

    Frequently, scientists grow crystals by dissolving a protein in a specific liquid solution, and then allowing that solution to evaporate. The methods used next have been, variously, invasive (adding a dye that is absorbed by the protein), destructive (crushing protein/salt-crystal mixtures and observing differences between the crushing of salt and protein), or costly and time-consuming (X-ray crystallography). In contrast to these methods, a new technology for monitoring protein growth, developed in part through NASA Small Business Innovation Research (SBIR) funding from Marshall Space Flight Center, is noninvasive, nondestructive, rapid, and more cost effective than X-ray analysis. The partner for this SBIR, Photon-X, Inc., of Huntsville, Alabama, developed spatial phase imaging technology that can monitor crystal growth in real time and in an automated mode. Spatial phase imaging scans for flaws quickly and produces a 3-D structured image of a crystal, showing volumetric growth analysis for future automated growth.

  18. Neural network calibration of a snapshot birefringent Fourier transform spectrometer with periodic phase errors.

    PubMed

    Luo, David; Kudenov, Michael W

    2016-05-16

    Systematic phase errors in Fourier transform spectroscopy can severely degrade the calculated spectra. Compensation of these errors is typically accomplished using post-processing techniques, such as Fourier deconvolution, linear unmixing, or iterative solvers. This results in increased computational complexity when reconstructing and calibrating many parallel interference patterns. In this paper, we describe a new method of calibrating a Fourier transform spectrometer based on the use of artificial neural networks (ANNs). In this way, it is demonstrated that a simpler and more straightforward reconstruction process can be achieved at the cost of additional calibration equipment. To this end, we provide a theoretical model for general systematic phase errors in a polarization birefringent interferometer. This is followed by a discussion of our experimental setup and a demonstration of our technique, as applied to data with and without phase error. The technique's utility is then supported by comparison to alternative reconstruction techniques using fast Fourier transforms (FFTs) and linear unmixing.

  19. Neural network calibration of a snapshot birefringent Fourier transform spectrometer with periodic phase errors.

    PubMed

    Luo, David; Kudenov, Michael W

    2016-05-16

    Systematic phase errors in Fourier transform spectroscopy can severely degrade the calculated spectra. Compensation of these errors is typically accomplished using post-processing techniques, such as Fourier deconvolution, linear unmixing, or iterative solvers. This results in increased computational complexity when reconstructing and calibrating many parallel interference patterns. In this paper, we describe a new method of calibrating a Fourier transform spectrometer based on the use of artificial neural networks (ANNs). In this way, it is demonstrated that a simpler and more straightforward reconstruction process can be achieved at the cost of additional calibration equipment. To this end, we provide a theoretical model for general systematic phase errors in a polarization birefringent interferometer. This is followed by a discussion of our experimental setup and a demonstration of our technique, as applied to data with and without phase error. The technique's utility is then supported by comparison to alternative reconstruction techniques using fast Fourier transforms (FFTs) and linear unmixing. PMID:27409947

  20. Midwave infrared imaging Fourier transform spectrometry of combustion plumes

    NASA Astrophysics Data System (ADS)

    Bradley, Kenneth C.

    A midwave infrared (MWIR) imaging Fourier transform spectrometer (IFTS) was used to successfully capture and analyze hyperspectral imagery of combustion plumes. Jet engine exhaust data from a small turbojet engine burning diesel fuel at a low rate of 300 cm3/min was collected at 1 cm -1 resolution from a side-plume vantage point on a 200x64 pixel window at a range of 11.2 meters. Spectral features of H2O, CO, and CO2 were present, and showed spatial variability within the plume structure. An array of thermocouple probes was positioned within the plume to aid in temperature analysis. A single-temperature plume model was implemented to obtain spatially-varying temperatures and plume concentrations. Model-fitted temperatures of 811 +/- 1.5 K and 543 +/- 1.6 K were obtained from plume regions in close proximity to thermocouple probes measuring temperatures of 719 K and 522 K, respectively. Industrial smokestack plume data from a coal-burning stack collected at 0.25 cm-1 resolution at a range of 600 meters featured strong emission from NO, CO, CO2, SO 2, and HCl in the spectral region 1800-3000 cm-1. A simplified radiative transfer model was employed to derive temperature and concentrations for clustered regions of the 128x64 pixel scene, with corresponding statistical error bounds. The hottest region (closest to stack centerline) was 401 +/- 0.36 K, compared to an in-stack measurement of 406 K, and model-derived concentration values of NO, CO2, and SO2 were 140 +/- 1 ppmV, 110,400 +/- 950 ppmV, and 382 +/- 4 ppmV compared to in-stack measurements of 120 ppmV (NOx), 94,000 ppmV, and 382 ppmV, respectively. In-stack measurements of CO and HCl were not provided by the stack operator, but model-derived values of 19 +/- 0.2 ppmV and 111 +/- 1 ppmV are reported near stack centerline. A deployment to Dugway Proving Grounds, UT to collect hyperspectral imagery of chemical and biological threat agent simulants resulted in weak spectral signatures from several species. Plume

  1. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography

    PubMed Central

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-01-01

    This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18. PMID:26977345

  2. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.

    PubMed

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-02-01

    This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18. PMID:26977345

  3. Complete fourier direct magnetic resonance imaging (CFD-MRI) for diffusion MRI

    PubMed Central

    Özcan, Alpay

    2013-01-01

    The foundation for an accurate and unifying Fourier-based theory of diffusion weighted magnetic resonance imaging (DW–MRI) is constructed by carefully re-examining the first principles of DW–MRI signal formation and deriving its mathematical model from scratch. The derivations are specifically obtained for DW–MRI signal by including all of its elements (e.g., imaging gradients) using complex values. Particle methods are utilized in contrast to conventional partial differential equations approach. The signal is shown to be the Fourier transform of the joint distribution of number of the magnetic moments (at a given location at the initial time) and magnetic moment displacement integrals. In effect, the k-space is augmented by three more dimensions, corresponding to the frequency variables dual to displacement integral vectors. The joint distribution function is recovered by applying the Fourier transform to the complete high-dimensional data set. In the process, to obtain a physically meaningful real valued distribution function, phase corrections are applied for the re-establishment of Hermitian symmetry in the signal. Consequently, the method is fully unconstrained and directly presents the distribution of displacement integrals without any assumptions such as symmetry or Markovian property. The joint distribution function is visualized with isosurfaces, which describe the displacement integrals, overlaid on the distribution map of the number of magnetic moments with low mobility. The model provides an accurate description of the molecular motion measurements via DW–MRI. The improvement of the characterization of tissue microstructure leads to a better localization, detection and assessment of biological properties such as white matter integrity. The results are demonstrated on the experimental data obtained from an ex vivo baboon brain. PMID:23596401

  4. High-resolution birefringence imaging in three-dimensional stressed models by fourier polarimetry.

    PubMed

    Berezhna, S; Berezhnyy, I; Takashi, M

    2001-10-01

    Recently several polarimetric techniques have been suggested, designed deliberately for automatic whole-field birefringence imaging in photoelastic models with essentially three-dimensional stresses. In general, these techniques are feasible for mapping three optical parameters that determine birefringence in a given case. However, the difficulty in attaining a high level of data accuracy over the whole image persists. There remains a problem of precise imaging in regions where the mutual interference of three given parameters inevitably causes accuracy deterioration. We show how to correct such imperfections in an imaging polarizer-sample-analyzer (PSA) Fourier polarimetry technique, as suggested earlier [Appl. Opt. 41, 644 (2001)]. The given technique (a method developed so that it maps the phase, the azimuth, and the ellipticity angles of an elliptic retarder) particularly fails to provide precise imaging in regions where the phase is either close to null or approaches pi-multiple values and in intervals where the ellipticity angle falls into the proximity of ?pi/4 values. These drawbacks can be successfully overcome by incorporation of a compensator into a PSA polarimeter arrangement. Although use of a compensator in the polarimeter makes the original technique more complicated, we demonstrate that the compensator allows two important issues to be resolved. First, it provides precise imaging for each of three optical parameters through the whole accessible intervals of the parameters regardless of the absolute value of the parameter. In addition, it gives a sign of phase that remains undefined in the PSA techniques. Theoretical considerations are presented and are followed by experimental data that illustrate the improved accuracy capabilities of the compensator-enhanced technique. PMID:18364770

  5. Single-Grid-Pair Fourier Telescope for Imaging in Hard-X Rays and gamma Rays

    NASA Technical Reports Server (NTRS)

    Campbell, Jonathan

    2008-01-01

    This instrument, a proposed Fourier telescope for imaging in hard-x rays and gamma rays, would contain only one pair of grids made of an appropriate radiation-absorpting/ scattering material, in contradistinction to multiple pairs of such as grids in prior Fourier x- and gamma-ray telescopes. This instrument would also include a relatively coarse gridlike image detector appropriate to the radiant flux to be imaged. Notwithstanding the smaller number of grids and the relative coarseness of the imaging detector, the images produced by the proposed instrument would be of higher quality.

  6. Avalanche and bit independence characteristics of double random phase encoding in the Fourier and Fresnel domains.

    PubMed

    Moon, Inkyu; Yi, Faliu; Lee, Yeon H; Javidi, Bahram

    2014-05-01

    In this work, we evaluate the avalanche effect and bit independence properties of the double random phase encoding (DRPE) algorithm in the Fourier and Fresnel domains. Experimental results show that DRPE has excellent bit independence characteristics in both the Fourier and Fresnel domains. However, DRPE achieves better avalanche effect results in the Fresnel domain than in the Fourier domain. DRPE gives especially poor avalanche effect results in the Fourier domain when only one bit is changed in the plaintext or in the encryption key. Despite this, DRPE shows satisfactory avalanche effect results in the Fresnel domain when any other number of bits changes in the plaintext or in the encryption key. To the best of our knowledge, this is the first report on the avalanche effect and bit independence behaviors of optical encryption approaches for bit units.

  7. A generalized Fourier penalty in prior-image-based reconstruction for cross-platform imaging

    NASA Astrophysics Data System (ADS)

    Pourmorteza, A.; Siewerdsen, J. H.; Stayman, J. W.

    2016-03-01

    Sequential CT studies present an excellent opportunity to apply prior-image-based reconstruction (PIBR) methods that leverage high-fidelity prior imaging studies to improve image quality and/or reduce x-ray exposure in subsequent studies. One major obstacle in using PIBR is that the initial and subsequent studies are often performed on different scanners (e.g. diagnostic CT followed by CBCT for interventional guidance); this results in mismatch in attenuation values due to hardware and software differences. While improved artifact correction techniques can potentially mitigate such differences, the correction is often incomplete. Here, we present an alternate strategy where the PIBR itself is used to mitigate these differences. We define a new penalty for the previously introduced PIBR called Reconstruction of Difference (RoD). RoD differs from many other PIBRs in that it reconstructs only changes in the anatomy (vs. reconstructing the current anatomy). Direct regularization of the difference image in RoD provides an opportunity to selectively penalize spatial frequencies of the difference image (e.g. low frequency differences associated with attenuation offsets and shading artifacts) without interfering with the variations in unchanged background image. We leverage this flexibility and introduce a novel regularization strategy using a generalized Fourier penalty within the RoD framework and develop the modified reconstruction algorithm. We evaluate the performance of the new approach in both simulation studies and in physical CBCT test-bench data. We find that generalized Fourier penalty can be highly effective in reducing low-frequency x-ray artifacts through selective suppression of spatial frequencies in the reconstructed difference image.

  8. Phase microscope imaging in phase space

    NASA Astrophysics Data System (ADS)

    Sheppard, Colin J. R.; Mehta, Shalin B.

    2016-03-01

    Imaging in a bright field or phase contrast microscope is partially coherent. We have found that the image can be conveniently considered and modeled in terms of the Wigner distribution function (WDF) of the object transmission. The WDF of the object has a simple physical interpretation for the case of a slowly varying object. Basically, the image intensity is the spatial marginal of the spatial convolution of the object WDF with the phase space imager kernel (PSIkernel), a rotated version of the transmission cross-coefficient. The PSI-kernel can be regarded as a partially-coherent generalization of the point spread function. This approach can be extended to consider the partial coherence of the image itself. In particular, we can consider the mutual intensity, WDF or ambiguity function of the image. It is important to note that the spatial convolution of the object WDF with the PSI-kernel is not a WDF, and not the WDF of the image. The phase space representations of the image have relevance to phase reconstruction methods such as phase space tomography, or the transport of intensity equation approach, and to the three-dimensional image properties.

  9. Image watermarking extraction using Fourier domain Wiener filter

    NASA Astrophysics Data System (ADS)

    Birch, Philip; Pavlidis, Marios; Panwar, Ankit; Nnamadim, Ozoemena; Kypraios, Ioannis; Mitra, Bhargav; Young, Rupert; Chatwin, Chris

    2008-03-01

    Digital watermarking is a vital process for protecting the copyright of images. This paper presents a method of embedding a private robust watermark into a digital image. The full complex form the Wiener filter is used to extract the signal from the watermarked image. This is shown to outperform the more conventional approximate notation. The results are shown to be extremely noise insensitive.

  10. Extreme Ultraviolet Phase Contrast Imaging

    SciTech Connect

    Denbeaux, Gregory; Garg, Rashi; Aquila, Andy; Barty, Anton; Goldberg, Kenneth; Gullikson, Eric; Liu, Yanwei; Wood, Obert

    2005-11-01

    The conclusions of this report are: (1) zone plate microscopy provides high resolution imaging of EUV masks; (2) using phase plates in the back focal plane of the objective lens can provide contrast mechanisms for measurement of the phase shift from defects on the mask; (3) the first high resolution EUV Zernike phase contrast images have been acquired; and (4) future work will include phase contrast mode in reflection from an EUV mask to directly measure the reflectivity and phase shift from defects.

  11. Implementation and assessment of diffusion-weighted partial Fourier readout-segmented echo-planar imaging.

    PubMed

    Frost, Robert; Porter, David A; Miller, Karla L; Jezzard, Peter

    2012-08-01

    Single-shot echo-planar imaging has been used widely in diffusion magnetic resonance imaging due to the difficulties in correcting motion-induced phase corruption in multishot data. Readout-segmented EPI has addressed the multishot problem by introducing a two-dimensional nonlinear navigator correction with online reacquisition of uncorrectable data to enable acquisition of high-resolution diffusion data with reduced susceptibility artifact and T*(2) blurring. The primary shortcoming of readout-segmented EPI in its current form is its long acquisition time (longer than similar resolution single-shot echo-planar imaging protocols by approximately the number of readout segments), which limits the number of diffusion directions. By omitting readout segments at one side of k-space and using partial Fourier reconstruction, readout-segmented EPI imaging times could be reduced. In this study, the effects of homodyne and projection onto convex sets reconstructions on estimates of the fractional anisotropy, mean diffusivity, and diffusion orientation in fiber tracts and raw T(2)- and trace-weighted signal are compared, along with signal-to-noise ratio results. It is found that projections onto convex sets reconstruction with 3/5 segments in a 2 mm isotropic diffusion tensor image acquisition and 9/13 segments in a 0.9 × 0.9 × 4.0 mm(3) diffusion-weighted image acquisition provide good fidelity relative to the full k-space parameters. This allows application of readout-segmented EPI to tractography studies, and clinical stroke and oncology protocols.

  12. Experimental geometry for simultaneous beam characterization and sample imaging allowing for pink beam Fourier transform holography or coherent diffractive imaging

    SciTech Connect

    Flewett, Samuel; Eisebitt, Stefan

    2011-02-20

    One consequence of the self-amplified stimulated emission process used to generate x rays in free electron lasers (FELs) is the intrinsic shot-to-shot variance in the wavelength and temporal coherence. In order to optimize the results from diffractive imaging experiments at FEL sources, it will be advantageous to acquire a means of collecting coherence and spectral information simultaneously with the diffraction pattern from the sample we wish to study. We present a holographic mask geometry, including a grating structure, which can be used to extract both temporal and spatial coherence information alongside the sample scatter from each individual FEL shot and also allows for the real space reconstruction of the sample using either Fourier transform holography or iterative phase retrieval.

  13. Multiplexing in optical encryption by using an aperture system and a rotating sandwich random phase diffuser in the Fourier plane

    NASA Astrophysics Data System (ADS)

    Singh, Madan; Kumar, Arvind; Singh, Kehar

    2008-03-01

    In the present paper, we describe multiplexing in optical encryption of two-dimensional images, by using apertures and rotation of one of the constituent phase diffusers of a sandwich phase diffuser in the Fourier plane. The sandwich phase diffuser is made with two random constituent phase-diffusing surfaces sandwiched together. The apertures of different sizes and shapes are made with the help of 'paint brush' software. Simulation results are presented showing the effects of size, shape, and orientation of the apertures on the decrypted images obtained via multiplexing techniques. In addition to the results of using aperture systems in encryption and decryption, the results of rotation of one of the constituent phase diffusers in decryption are analyzed and used in multiplexing. Due to the use of aperture systems and the rotation of the constituent phase diffuser, the multiplexing capability of the system in encryption is enhanced along with the enhanced security due to using a sandwich diffuser. To evaluate the reliability of the technique, mean square error between the decrypted and the original image has been calculated.

  14. Alpha-rooting method of color image enhancement by discrete quaternion Fourier transform

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.; Agaian, Sos S.

    2014-02-01

    This paper presents a novel method for color image enhancement based on the discrete quaternion Fourier transform. We choose the quaternion Fourier transform, because it well-suited for color image processing applications, it processes all 3 color components (R,G,B) simultaneously, it capture the inherent correlation between the components, it does not generate color artifacts or blending , finally it does not need an additional color restoration process. Also we introduce a new CEME measure to evaluate the quality of the enhanced color images. Preliminary results show that the α-rooting based on the quaternion Fourier transform enhancement method out-performs other enhancement methods such as the Fourier transform based α-rooting algorithm and the Multi scale Retinex. On top, the new method not only provides true color fidelity for poor quality images but also averages the color components to gray value for balancing colors. It can be used to enhance edge information and sharp features in images, as well as for enhancing even low contrast images. The proposed algorithms are simple to apply and design, which makes them very practical in image enhancement.

  15. Application of Fourier descriptors and neural network to classification underground images

    NASA Astrophysics Data System (ADS)

    Tolstoy, Leonid; Parsiani, Hamed; Ortiz, Jorge

    2003-03-01

    This paper presents an application of Fourier Descriptors and Neural Network for the recognition of archeological artifacts in Ground Penetrating Radar (GPR) images of a surveyed site. Multiple 2-D GPR images of a site are made available by NASA-SSC center. The buried artifacts in these images appear in the form of parabolas which are the results of radar backscatter from the artifacts. The Fourier Descriptors of an image are applied as inputs to a feed-forward backpropagation Neural Network Classifier (NNC). The NNC algorithm was trained to recognize parabola-like shapes from non-parabola shapes in the sub-surface images. The procedure consisted of removing background noise using a suitable threshold filter, locating the separate shapes in the image using N8(p) connectivity algorithm, calculating a short sequence of Fourier Descriptors (FD) of each isolated shape, and finally classifying parabola/no-parabola using Neural Network applied to the FDs. The results are images with recognized parabolas which indicate the presence of buried artifacts. As a useful feature to archeologists, a 3-D Visualization of the complete survey area is produced using C++ and Visualization Tool Kit. The Algorithms for removing the background noise, thresholding, calculating the Fourier Descriptors, and obtaining a classification using a Neural Network were developed using Matlab.

  16. Improvement of quality of optical reconstruction of digital Fourier holograms displayed on phase-only SLM by its digital preprocessing

    NASA Astrophysics Data System (ADS)

    Cheremkhin, Pavel A.; Evtikhiev, Nikolay N.; Krasnov, Vitaly V.; Porshneva, Liudmila A.; Rodin, Vladislav G.; Starikov, Sergey N.

    2014-10-01

    Digital holography is popular tool for research and practical applications in various fields of science and technology. Most widespread method of optical reconstruction implements digital hologram display on spatial light modulators (SLM). Optical reconstruction of digital holograms is used for remote display of static and dynamic 2D and 3D scenes, in optical information processing, metrology, interferometry, microscopy, etc. Holograms recorded with digital cameras are amplitude type. Therefore quality of its optical reconstruction with phase SLM is worse compared to amplitude SLM. However application of phase SLM can provide higher diffraction efficiency. To improve quality of optical reconstruction with phase SLM, method of SLM phase modulation depth reduction at digital hologram display is proposed. To our knowledge, this method was applied only in analog holography. Also two other methods of quality improvement are considered: hologram to kinoform conversion and holograms multiplexing. Numerical experiments on modelling of digital Fourier holograms recording and their optical reconstruction by phase SLM were performed. Method of SLM phase modulation depth reduction at digital holograms display was proposed and tested. SLM phase modulation depth ranged from 0 to 2π. Quantity of hologram phase levels equal to 256 corresponds to 2π phase modulation depth. To keep SLM settings while changing phase modulation depth hologram phase distribution was renormalized instead. Dependencies of reconstruction quality on hologram phase modulation depth were obtained. Best quality is achieved at 0.27π÷0.31π phase modulation depth. To reduce speckle noise, hologram multiplexing can be applied. Modeling of multiplex holograms optical reconstruction was conducted. Speckle noise reduction was achieved. For improvement of digital hologram optical reconstruction quality and diffraction efficiency hologram to kinoform conversion can be used. Firstly numerically reconstructed image

  17. Image encryption based on the reality-preserving multiple-parameter fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Lang, Jun

    2012-05-01

    In recent years, a number of methods have been proposed in the literature for the encryption of two-dimensional information by using the fractional Fourier transform, but most of their encryptions are complex values and need digital hologram technique to record information, which is inconvenient for digital transmission. In this paper, we propose a new approach for image encryption based on the real-valuedness and decorrelation property of the reality-preserving multiple-parameter fractional Fourier transform in order to meet the requirements of the secure image transmission. In the proposed scheme, the original and encrypted images are respectively in the spatial domain and the reality-preserving multiple-parameter fractional Fourier transformed domain determined by the encryption keys. Numerical simulations are performed to demonstrate that the proposed method is reliable and more robust to blind decryption than several existing methods.

  18. [A phase error correction method for the new Fourier transforms spectrometer].

    PubMed

    Wang, Ning; Gong, Tian-Cheng; Chen, Jian-Jun; Li, Yang; Yang, Yi-Ning; Zhu, Yong; Zhang, Jie; Chen, Wei-Min

    2014-11-01

    To decrease the distortion of the recovered spectrum, improve the quantity of the recovered spectrum and decrease the influence of the phase error of the new spectrum detection system based on MEMS (micro-electro-mechanical systems) micro-mirrors, a new phase error correction method for this system is proposed in the present paper. The source of phase error of the spectrum detection system based on MEMS micro-mirrors is analyzed firstly. The analyzed result indicated that the phase error of the new spectral Fourier transform detection system is the zero drift of the optical path difference, and the phase error can be corrected by Zero-crossing sampling which is realized by improving the structure of the interferometer system and Mertz product The spectrum detection system is set up and the phase error correction method is verified by this system. The experiment result is show that the quantity of the recovered spectrum of the spectrum detection is improved obviously by using the improved interferometer system and Mertz product, and the recovered spectrum has no negative peaks and the side lobes is suppressed markedly. This correction method can reduce the influence caused by phase error to the system performance well and improve the spectral detection performance effectively. In this paper, the origin of the system phase error based on the new MEMS micromirror Fourier transform spectroscopy detection system is analyzed, and the phase error correction method is proposed. This method can improve the performance of the spectrum detection system.

  19. [A phase error correction method for the new Fourier transforms spectrometer].

    PubMed

    Wang, Ning; Gong, Tian-Cheng; Chen, Jian-Jun; Li, Yang; Yang, Yi-Ning; Zhu, Yong; Zhang, Jie; Chen, Wei-Min

    2014-11-01

    To decrease the distortion of the recovered spectrum, improve the quantity of the recovered spectrum and decrease the influence of the phase error of the new spectrum detection system based on MEMS (micro-electro-mechanical systems) micro-mirrors, a new phase error correction method for this system is proposed in the present paper. The source of phase error of the spectrum detection system based on MEMS micro-mirrors is analyzed firstly. The analyzed result indicated that the phase error of the new spectral Fourier transform detection system is the zero drift of the optical path difference, and the phase error can be corrected by Zero-crossing sampling which is realized by improving the structure of the interferometer system and Mertz product The spectrum detection system is set up and the phase error correction method is verified by this system. The experiment result is show that the quantity of the recovered spectrum of the spectrum detection is improved obviously by using the improved interferometer system and Mertz product, and the recovered spectrum has no negative peaks and the side lobes is suppressed markedly. This correction method can reduce the influence caused by phase error to the system performance well and improve the spectral detection performance effectively. In this paper, the origin of the system phase error based on the new MEMS micromirror Fourier transform spectroscopy detection system is analyzed, and the phase error correction method is proposed. This method can improve the performance of the spectrum detection system. PMID:25752034

  20. Phase cycling for optical two-dimensional Fourier-transform spectroscopy

    NASA Astrophysics Data System (ADS)

    Autry, Travis; Moody, Galan; Li, Hebin; Siemens, Mark; Cundiff, Steven

    2011-03-01

    Phase-cycling has been implemented in optical two-dimensional Fourier-transform spectroscopy to extract signals from quantum wells and quantum dots and to eliminate noise such as pump scatter co-propagating with the four-wave mixing signal. Experiments using actively phase-stabilized interferometers to cycle the excitation pulse optical phases suffer from partial noise cancellation because excitation and phase-control laser wavelengths are incommensurate. To obtain full noise elimination, we have incorporated liquid crystal variable retarders capable of imposing a π phase shift for wavelengths 650-950 nm. We present non-rephasing spectra of potassium vapor contained in a ~ 20 μ m transmission cell and show that this phase cycling method removes all noise from pump scatter while drastically reducing the data acquisition time compared to mechanical phase-delay techniques. This work was supported by an NSF-REU grant at the University of Colorado- Boulder.

  1. Fourier magnetic imaging with nanoscale resolution and compressed sensing speed-up using electronic spins in diamond

    NASA Astrophysics Data System (ADS)

    Arai, K.; Belthangady, C.; Zhang, H.; Bar-Gill, N.; Devience, S. J.; Cappellaro, P.; Yacoby, A.; Walsworth, R. L.

    2015-10-01

    Optically detected magnetic resonance using nitrogen-vacancy (NV) colour centres in diamond is a leading modality for nanoscale magnetic field imaging, as it provides single electron spin sensitivity, three-dimensional resolution better than 1 nm (ref. 5) and applicability to a wide range of physical and biological samples under ambient conditions. To date, however, NV-diamond magnetic imaging has been performed using ‘real-space’ techniques, which are either limited by optical diffraction to ˜250 nm resolution or require slow, point-by-point scanning for nanoscale resolution, for example, using an atomic force microscope, magnetic tip, or super-resolution optical imaging. Here, we introduce an alternative technique of Fourier magnetic imaging using NV-diamond. In analogy with conventional magnetic resonance imaging (MRI), we employ pulsed magnetic field gradients to phase-encode spatial information on NV electronic spins in wavenumber or ‘k-space’ followed by a fast Fourier transform to yield real-space images with nanoscale resolution, wide field of view and compressed sensing speed-up.

  2. Phase transfer function of digital imaging systems

    NASA Astrophysics Data System (ADS)

    Bhakta, Vikrant R.

    For the past several decades, optical engineering has relied heavily on Fourier analysis of linear systems as a valuable aid in realizing numerous imaging applications. Today, spatial frequency analysis via the optical transfer function (OTF) remains an integral tool for the design, characterization and testing of incoherent imaging systems. The magnitude of the complex OTF is known as the modulation transfer function (MTF) and its phase is given by the phase transfer function (PTF). The MTF represents the contrast reduction at each spatial frequency; whereas, the PTF represents the spatial shift of these frequencies. While the MTF has been used extensively to characterize imaging systems, the PTF has long been ignored because it was thought to have an insignificant presence and to be difficult to understand and measure. Through theoretical analysis and experimental demonstrations, this work addresses all of these issues and shows that the PTF is a valuable tool for modern-day digital imaging systems. The effects of optical aberrations on the PTF of an imaging system in the absence of aliasing have been analyzed in detail. However, for the digital imaging systems, the effect of aliasing on the overall system behavior becomes an important consideration. To this end, the effects of aliasing on the PTF of the sampled imaging system are described and its key properties are derived. The role of PTF as an essential metric in today's imaging systems necessitates practical PTF measurement techniques. Two, easy-to-implement, image-based methods for PTF measurement are described and experimentally validated. These measurement methods and the insights gained from the theoretical analysis are leveraged for several applications spanning diverse fields such as optical system characterization, computational imaging, and image processing.

  3. Crystallographic phase retrieval through image processing under constraints

    NASA Astrophysics Data System (ADS)

    Zhang, Kam Y.

    1993-11-01

    The crystallographic image processing techniques of Sayre's equation, molecular averaging, solvent flattening and histogram matching are combined in an integrated procedure for macromolecular phase retrieval. It employs the constraints of the local shape of electron density, equal molecules, solvent flatness and correct electron density distribution. These constraints on electron density image are satisfied simultaneously by solving a system of non- linear equations using fast Fourier transform. The electron density image is further filtered under the constraint of observed diffraction amplitudes. The effect of each constraint on phase retrieval is examined. The constraints are found to work synergistically in phase retrieval. Test results on 2Zn insulin are presented.

  4. A Super-Imaging Fourier Transform Spectrometer for the VLT

    NASA Astrophysics Data System (ADS)

    Maillard, Jean-Pierre; Bacon, Roland

    A cryogenic, near-infrared (Hawaii2 domain) imaging FTS is proposed for a Nasmyth focus of an 8-m VLT, as a unique solution for providing integral field spectroscopy at high spectral resolution (R = 50,000 at 2 μm) over a large field, up to 3 x 3 arcmin FOV. Another mode is proposed behind AO with a smaller field but preserving high spectral resolution.

  5. Fourier spectrum and phases for a signal in a finite interval

    NASA Astrophysics Data System (ADS)

    Belmont, Gérard; Dorville, Nicolas; Sahraoui, Fouad; Rezeau, Laurence

    2015-04-01

    When investigating the physics of turbulent media, as the solar wind or the magnetosheath plasmas, obtaining accurate Fourier spectra and phases is a crucial issue. For the different fields, the spectra allow in particular verifying whether one or several power laws can be determined in different frequency ranges. Accurate phases are necessary as well for all the "higher order statistics" studies in Fourier space, the coherence ones and for the polarization studies. Unfortunately, the Fourier analysis is not unique for a finite time interval of duration T: the frequencies lower than 1/T have a large influence on the result, which can hardly be controlled. This unknown "trend" has in particular the effect of introducing jumps at the edges of the interval, for the function under study itself, as well as for all its derivatives. The Fourier transform obtained directly by FFT (Fast Fourier Transform) is generally much influenced by these effects and cannot be used without care for wide band signals. The interference between the jumps and the signal itself provide in particular characteristic "hairs" on the spectrum, which are clearly visible on it with df≈1/T. These fluctuations are usually eliminated by smoothing the spectrum, or by averaging several successive spectra. Nevertheless, such treatments introduce uncertainties on the spectral laws (the phases being anyway completely lost). Windowing is also a method currently used to suppress or decrease the jumps, but it modifies the signal (the windowed trend has a spectrum, which is convolved with the searched one) and the phases are generally much altered. Here, we present a new data processing technique to circumvent these difficulties. It takes advantage of the fact that the signal is generally not unknown out of the interval under study: the complete signal is tapered to this interval of interest thanks to a new window function, sharp but not square. This window function is chosen such that the spectrum obtained

  6. The geometric phase analysis method based on the local high resolution discrete Fourier transform for deformation measurement

    NASA Astrophysics Data System (ADS)

    Dai, Xianglu; Xie, Huimin; Wang, Huaixi; Li, Chuanwei; Liu, Zhanwei; Wu, Lifu

    2014-02-01

    The geometric phase analysis (GPA) method based on the local high resolution discrete Fourier transform (LHR-DFT) for deformation measurement, defined as LHR-DFT GPA, is proposed to improve the measurement accuracy. In the general GPA method, the fundamental frequency of the image plays a crucial role. However, the fast Fourier transform, which is generally employed in the general GPA method, could make it difficult to locate the fundamental frequency accurately when the fundamental frequency is not located at an integer pixel position in the Fourier spectrum. This study focuses on this issue and presents a LHR-DFT algorithm that can locate the fundamental frequency with sub-pixel precision in a specific frequency region for the GPA method. An error analysis is offered and simulation is conducted to verify the effectiveness of the proposed method; both results show that the LHR-DFT algorithm can accurately locate the fundamental frequency and improve the measurement accuracy of the GPA method. Furthermore, typical tensile and bending tests are carried out and the experimental results verify the effectiveness of the proposed method.

  7. Spectral multiplexing and coherent-state decomposition in Fourier ptychographic imaging.

    PubMed

    Dong, Siyuan; Shiradkar, Radhika; Nanda, Pariksheet; Zheng, Guoan

    2014-06-01

    Information multiplexing is important for biomedical imaging and chemical sensing. In this paper, we report a microscopy imaging technique, termed state-multiplexed Fourier ptychography (FP), for information multiplexing and coherent-state decomposition. Similar to a typical Fourier ptychographic setting, we use an array of light sources to illuminate the sample from different incident angles and acquire corresponding low-resolution images using a monochromatic camera. In the reported technique, however, multiple light sources are lit up simultaneously for information multiplexing, and the acquired images thus represent incoherent summations of the sample transmission profiles corresponding to different coherent states. We show that, by using the state-multiplexed FP recovery routine, we can decompose the incoherent mixture of the FP acquisitions to recover a high-resolution sample image. We also show that, color-multiplexed imaging can be performed by simultaneously turning on R/G/B LEDs for data acquisition. The reported technique may provide a solution for handling the partially coherent effect of light sources used in Fourier ptychographic imaging platforms. It can also be used to replace spectral filter, gratings or other optical components for spectral multiplexing and demultiplexing. With the availability of cost-effective broadband LEDs, the reported technique may open up exciting opportunities for computational multispectral imaging.

  8. Full-Stokes Fourier-transform imaging spectropolarimeter using a time-division polarization modulator.

    PubMed

    Meng, Xin; Li, Jianxin; Song, Huaqing; Zhu, Rihong

    2014-08-20

    A Fourier-transform imaging spectropolarimeter is presented and demonstrated. It is composed of a time-division polarization modulator and a high radiation throughput Fourier-transform spectrometer. Four polarization states of the input light are generated by rotating the retarder. Then, the polarized light enters the Fourier-transform spectrometer to create four sets of interferometric images, where we can recover four polarization spectra and calculate the full-Stokes vector in various wavenumber frequency. The method has good performance to resist instrument noise and has the advantage of high spatial resolution. The laboratory setup is described and the noise source is analyzed. Two proven experiments have been carried out in visible light.

  9. Instrumental phase-based method for Fourier transform spectrometer measurements processing

    SciTech Connect

    Saggin, Bortolino; Scaccabarozzi, Diego; Tarabini, Marco

    2011-04-20

    Phase correction is a critical procedure for most space-borne Fourier transform spectrometers (FTSs) whose accuracy (owing to often poor signal-to-noise ratio, SNR) can be jeopardized from many uncontrollable environmental conditions. This work considers the phase correction in an FTS working under significant temperature change during the measurement and affected by mechanical disturbances. The implemented method is based on the identification of an instrumental phase that is dependent on the interferometer temperature and on the extraction of a linear phase component through a least-squares approach. The use of an instrumental phase parameterized with the interferometer temperature eases the determination of the linear phase that can be extracted using only a narrow spectral region selected to be immune from disturbances. The procedure, in this way, is made robust against phase errors arising from instrumental effects, a key feature to reduce the disturbances through spectra averaging. The method was specifically developed for the Mars IR Mapper spectrometer, that was designed for operation onboard a rover on the Mars surface; the validation was performed using ground and in-flight measurements of the Fourier transform IR spectrometer planetary Fourier spectrometer, onboard the MarsExpress mission. The symmetrization has been exploited also for the spectra calibration, highlighting the issues deriving from the cases of relevant beamsplitter emission. The applicability of this procedure to other instruments is conditional to the presence in the spectra of at least one spectral region with a large SNR along with a negligible (or known) beamsplitter emission. For the PFS instrument, the processing of data with relevant beamsplitter emission has been performed exploiting the absorption carbon dioxide bands present in Martian spectra.

  10. Instrumental phase-based method for Fourier transform spectrometer measurements processing.

    PubMed

    Saggin, Bortolino; Scaccabarozzi, Diego; Tarabini, Marco

    2011-04-20

    Phase correction is a critical procedure for most space-borne Fourier transform spectrometers (FTSs) whose accuracy (owing to often poor signal-to-noise ratio, SNR) can be jeopardized from many uncontrollable environmental conditions. This work considers the phase correction in an FTS working under significant temperature change during the measurement and affected by mechanical disturbances. The implemented method is based on the identification of an instrumental phase that is dependent on the interferometer temperature and on the extraction of a linear phase component through a least-squares approach. The use of an instrumental phase parameterized with the interferometer temperature eases the determination of the linear phase that can be extracted using only a narrow spectral region selected to be immune from disturbances. The procedure, in this way, is made robust against phase errors arising from instrumental effects, a key feature to reduce the disturbances through spectra averaging. The method was specifically developed for the Mars IR Mapper spectrometer, that was designed for operation onboard a rover on the Mars surface; the validation was performed using ground and in-flight measurements of the Fourier transform IR spectrometer planetary Fourier spectrometer, onboard the MarsExpress mission. The symmetrization has been exploited also for the spectra calibration, highlighting the issues deriving from the cases of relevant beamsplitter emission. The applicability of this procedure to other instruments is conditional to the presence in the spectra of at least one spectral region with a large SNR along with a negligible (or known) beamsplitter emission. For the PFS instrument, the processing of data with relevant beamsplitter emission has been performed exploiting the absorption carbon dioxide bands present in Martian spectra. PMID:21509063

  11. Instrumental phase-based method for Fourier transform spectrometer measurements processing.

    PubMed

    Saggin, Bortolino; Scaccabarozzi, Diego; Tarabini, Marco

    2011-04-20

    Phase correction is a critical procedure for most space-borne Fourier transform spectrometers (FTSs) whose accuracy (owing to often poor signal-to-noise ratio, SNR) can be jeopardized from many uncontrollable environmental conditions. This work considers the phase correction in an FTS working under significant temperature change during the measurement and affected by mechanical disturbances. The implemented method is based on the identification of an instrumental phase that is dependent on the interferometer temperature and on the extraction of a linear phase component through a least-squares approach. The use of an instrumental phase parameterized with the interferometer temperature eases the determination of the linear phase that can be extracted using only a narrow spectral region selected to be immune from disturbances. The procedure, in this way, is made robust against phase errors arising from instrumental effects, a key feature to reduce the disturbances through spectra averaging. The method was specifically developed for the Mars IR Mapper spectrometer, that was designed for operation onboard a rover on the Mars surface; the validation was performed using ground and in-flight measurements of the Fourier transform IR spectrometer planetary Fourier spectrometer, onboard the MarsExpress mission. The symmetrization has been exploited also for the spectra calibration, highlighting the issues deriving from the cases of relevant beamsplitter emission. The applicability of this procedure to other instruments is conditional to the presence in the spectra of at least one spectral region with a large SNR along with a negligible (or known) beamsplitter emission. For the PFS instrument, the processing of data with relevant beamsplitter emission has been performed exploiting the absorption carbon dioxide bands present in Martian spectra.

  12. FPGA-based phase control of acousto-optic modulator Fourier synthesis system through gradient descent phase-locking algorithm.

    PubMed

    Underwood, Kenneth J; Jones, Andrew M; Gopinath, Juliet T

    2015-06-20

    We present a new application of the stochastic parallel gradient descent (SPGD) algorithm to fast active phase control in a Fourier synthesis system. Pulses (4.9 ns) with an 80 MHz repetition rate are generated by feedback from a single phase-sensitive metric. Phase control is applied via fast current modulation of a tapered amplifier using an SPGD algorithm realized on a field-programmable gate array (FPGA). The waveforms are maintained by constant active feedback from the FPGA. We also discuss the extension of this technique to many more semiconductor laser emitters in a diode laser array.

  13. FPGA-based phase control of acousto-optic modulator Fourier synthesis system through gradient descent phase-locking algorithm.

    PubMed

    Underwood, Kenneth J; Jones, Andrew M; Gopinath, Juliet T

    2015-06-20

    We present a new application of the stochastic parallel gradient descent (SPGD) algorithm to fast active phase control in a Fourier synthesis system. Pulses (4.9 ns) with an 80 MHz repetition rate are generated by feedback from a single phase-sensitive metric. Phase control is applied via fast current modulation of a tapered amplifier using an SPGD algorithm realized on a field-programmable gate array (FPGA). The waveforms are maintained by constant active feedback from the FPGA. We also discuss the extension of this technique to many more semiconductor laser emitters in a diode laser array. PMID:26193004

  14. Gallery of Datacubes Obtained with the Livermore Imaging Fourier Transform Spectrometer

    SciTech Connect

    Wurtz, R; Wishnow, E H; Blais-Ouellette, S; Cook, K H; Holden, B P; Carr, D J; Stubbs, C W

    2002-09-12

    We have acquired spatial-spectral datacubes of astronomical objects using the Livermore visible-band imaging Fourier transform spectrometer at Apache Point Observatory. Each raw datacube contains hundreds of thousands of spectral interferograms. We present in-progress demonstrations of these observations.

  15. Gaseous effluent monitoring and identification using an imaging Fourier transform spectrometer

    SciTech Connect

    Carter, M.R.; Bennett, C.L.; Fields, D.J.; Hernandez, J.

    1993-10-01

    We are developing an imaging Fourier transform spectrometer for chemical effluent monitoring. The system consists of a 2-D infrared imaging array in the focal plane of a Michelson interferometer. Individual images are coordinated with the positioning of a moving mirror in the Michelson interferometer. A three dimensional data cube with two spatial dimensions and one interferogram dimension is then Fourier transformed to produce a hyperspectral data cube with one spectral dimension and two spatial dimensions. The spectral range of the instrument is determined by the choice of optical components and the spectral range of the focal plane array. Measurements in the near UV, visible, near IR, and mid-IR ranges are possible with the existing instrument. Gaseous effluent monitoring and identification measurements will be primarily in the ``fingerprint`` region of the spectrum, ({lambda} = 8 to 12 {mu}m). Initial measurements of effluent using this imaging interferometer in the mid-IR will be presented.

  16. Image Stability Requirements For a Geostationary Imaging Fourier Transform Spectrometer (GIFTS)

    NASA Technical Reports Server (NTRS)

    Bingham, G. E.; Cantwell, G.; Robinson, R. C.; Revercomb, H. E.; Smith, W. L.

    2001-01-01

    A Geostationary Imaging Fourier Transform Spectrometer (GIFTS) has been selected for the NASA New Millennium Program (NMP) Earth Observing-3 (EO-3) mission. Our paper will discuss one of the key GIFTS measurement requirements, Field of View (FOV) stability, and its impact on required system performance. The GIFTS NMP mission is designed to demonstrate new and emerging sensor and data processing technologies with the goal of making revolutionary improvements in meteorological observational capability and forecasting accuracy. The GIFTS payload is a versatile imaging FTS with programmable spectral resolution and spatial scene selection that allows radiometric accuracy and atmospheric sounding precision to be traded in near real time for area coverage. The GIFTS sensor combines high sensitivity with a massively parallel spatial data collection scheme to allow high spatial resolution measurement of the Earth's atmosphere and rapid broad area coverage. An objective of the GIFTS mission is to demonstrate the advantages of high spatial resolution (4 km ground sample distance - gsd) on temperature and water vapor retrieval by allowing sampling in broken cloud regions. This small gsd, combined with the relatively long scan time required (approximately 10 s) to collect high resolution spectra from geostationary (GEO) orbit, may require extremely good pointing control. This paper discusses the analysis of this requirement.

  17. Fourier spectrum and phases for a signal in a finite interval

    NASA Astrophysics Data System (ADS)

    Dorville, N.; Belmont, G.; Sahraoui, F.; Rezeau, L.

    2014-12-01

    When investigating the physics of turbulent media, as the solar wind or the magnetosheath plasmas, obtaining accurate Fourier spectra and phases is a crucial issue. For the different fields, the spectra allow in particular verifying whether one or several power laws can be determined in different frequency ranges. Accurate phases are necessary as well for all the "higher order statistics" studies in Fourier space, the coherence ones and for the polarization studies. Unfortunately, the Fourier analysis is not unique for a finite time interval of duration T: the frequencies lower than 1/T have a large influence on the result, which can hardly be controlled. This unknown "trend" has in particular the effect of superposing jumps at the edges of the interval, for the function under study itself, as well as for all its derivatives. The Fourier transform obtained directly by FFT (Fast Fourier Transform) is generally much influenced by these effects and cannot be used without care for wide band signals. The interferences between the jumps and the signal itself also provide "hairs" on the spectrum, which are clearly visible fluctuations with df≈1/T. These fluctuations are usually eliminated by smoothing the spectrum, or by averaging several successive spectra. Nevertheless, such smoothing introduces uncertainties on the spectral laws and it makes the phases lost. Windowing is also a method currently used to suppress the jumps, but it modifies the signal (the windowed trend has a spectrum, which is convolved with the searched one) and the phases are also lost to a large extent. Here, we present a new data processing technique to circumvent these difficulties. It takes advantage of the fact that the signal is generally not unknown out of the interval under study: the complete signal is tapered to this interval of interest thanks to a new kind of window, sharp but not square. This kind of window is such that the spectrum obtained can then be deconvolved almost exactly

  18. Two-dimensional Kerr-Fourier imaging of translucent phantoms in thick turbid media

    NASA Astrophysics Data System (ADS)

    Liang, X.; Wang, L.; Ho, P. P.; Alfano, R. R.

    1995-06-01

    Translucent scattering phantoms hidden inside a 5.5-cm-thick Intralipid solution were imaged as a function of phantom scattering coefficients by the use of a picosecond time-and space-gated Kerr-Fourier imaging system. A 2-mm-thick translucent phantom with a 0.1% concentration (scattering coefficient) difference from the 55-mm-thick surrounding scattering host can be distinguished at a signal level of approximately 10-10 of the incidence illumination intensity.

  19. LETTER TO THE EDITOR: The fractional Fourier transform and ISAR imaging

    NASA Astrophysics Data System (ADS)

    Borden, Brett

    2000-04-01

    We comment on a connection between the fractional Fourier transform and inverse synthetic aperture radar imaging (ISAR). The results help illuminate older constructions due to Bernfeld (Bernfeld M 1984 Chirp Doppler radar Proc. IEEE Lett. 72 540) and Feig and Grünbaum (Feig E and Grünbaum A 1986 Tomographic methods in range-Doppler radar Inverse Problems 2 185-95) and suggest a fast scheme for eliminating the polar data reformatting step in (ordinary) ISAR imaging.

  20. Application of Fourier descriptors and fuzzy logic to classification of radar subsurface images

    NASA Astrophysics Data System (ADS)

    Parsiani, Hamed; Tolstoy, Leonid

    2004-02-01

    This paper presents an application of Fourier Descriptors and Fuzzy Logic for the recognition of archeological artifacts in Ground Penetrating Radar (GPR) images of a surveyed site. 2-D GPR survey images of a site are made available by NASA-SSC center. The buried artifacts in these images appear in the form of hyperbolas which are the results of radar backscatter from the artifacts. The Fourier Descriptors of an image are applied as inputs to a Fuzzy C-Mean Classifier (FCMC). The FCMC algorithm has to recognize different types of shapes, in order to separate hyperbola-like shapes from non-hyperbola shapes in the sub-surface images. The procedure consisted of removing background noise using a suitable threshold filter, locating the separate shapes in the image using N8(p) connectivity algorithm, calculating a short sequence of Fourier Descriptors (FD) of each isolated shape, and obtaining an unsupervised classification by applying Fuzzy C-Mean clustering algorithm to the FD sequences. The classes obtained depend upon the requirements of the user, namely, two classes of hyperbola/no-hyperbola objects, or several classes from symmetric hyperbolas to total rejects could be obtained. The results consisting of recognized hyperbolas indicate the presence of buried artifacts. Also, our previous results of supervised FD-Neural Network (FD-NNC) published in the proceedings of SPIE 2002 are compared with unsupervised FD-FCMC. The compared results in terms of the quality of classification are presented in this work.

  1. Optical coherence tomography for imaging of subpleural alveolar structure using a Fourier domain mode locked laser

    NASA Astrophysics Data System (ADS)

    Kirsten, Lars; Walther, Julia; Cimalla, Peter; Gaertner, Maria; Meissner, Sven; Koch, Edmund

    2011-06-01

    Optical coherence tomography (OCT) is a noninvasive imaging modality generating cross sectional and volumetric images of translucent samples. In Fourier domain OCT (FD OCT), the depth profile is calculated by a fast Fourier transformation of the interference spectrum, providing speed and SNR advantage and thus making FD OCT well suitable in biomedical applications. The interference spectrum can be acquired spectrally resolved in spectral domain OCT or time-resolved in optical frequency domain imaging (OFDI). Since OCT images still suffer from motion artifacts, especially under in vivo conditions, increased depth scan rates are required. Therefor, the principle of Fourier domain mode locking has been presented by R. Huber et al. circumventing the speed limitations of conventional FD OCT systems. In FDML lasers, a long single mode fiber is inserted in the ring resonator of the laser resulting in an optical round trip time of a few microseconds. Sweeping the wavelength synchronously by a tunable Fabry-Perot filter can provide wavelength sweeps with repetition rates up to a few MHz used for OFDI. Imaging of subpleural lung tissue for investigation of lung dynamics and its elastic properties is a further biomedical application demanding high-speed OCT imaging techniques. For the first time, the visualization of subpleural alveolar structures of a rabbit lung is presented by the use of an FDML-based OCT system enabling repetition rates of 49.5 kHz and 122.6 kHz, respectively.

  2. Ultrahigh resolution spectral/Fourier domain OCT systems for retinal imaging applications

    NASA Astrophysics Data System (ADS)

    Srinivasan, V. J.; Wojtkowski, M.; Witkin, A.; Monson, B.; Duker, J. S.; Schuman, J. S.; Shidlovski, V.; Yakubovich, S.; Fujimoto, J. G.

    2006-02-01

    In this manuscript we describe the design and optimization of ultrahigh resolution spectral/Fourier domain OCT systems for three applications in retinal imaging: imaging of the normal retina, three-dimensional (3D) imaging of retinal pathologies, and 3D imaging of the rodent retina. Seven spectrometer configurations were tested for resolution and sensitivity drop with depth, and CCD pixel crosstalk was characterized. The human retina was imaged in vivo with five different axial resolutions between 2 and 10 microns, and with three different transverse resolutions. Information from these experiments enabled the optimization of OCT systems for the above applications. Results include clinical 3D data of retinal pathologies, high quality cross-sectional images of the normal retina with different axial and transverse resolutions and 3D data from the rat and mouse retinas. Factors affecting the sensitivity fall-off are discussed and theoretical predictions are compared with experimental measurements. Different retinal imaging applications necessitate different system designs, depending on the requirements of speed, axial resolution, axial measurement range, transverse resolution, and field of view. While axial resolution is the dominant factor in image quality, a smaller transverse spot size can reduce speckle size and improve contrast at boundaries such as the boundary between the ganglion cell layer and the inner plexiform layer. The effect of reducing the transverse spot size is most pronounced in images with 5-10 um axial resolution. In addition, we characterize all factors responsible for the sensitivity drop with depth in spectral/Fourier domain OCT.

  3. A method for estimating spatial resolution of real image in the Fourier domain.

    PubMed

    Mizutani, Ryuta; Saiga, Rino; Takekoshi, Susumu; Inomoto, Chie; Nakamura, Naoya; Itokawa, Masanari; Arai, Makoto; Oshima, Kenichi; Takeuchi, Akihisa; Uesugi, Kentaro; Terada, Yasuko; Suzuki, Yoshio

    2015-01-01

    Spatial resolution is a fundamental parameter in structural sciences. In crystallography, the resolution is determined from the detection limit of high-angle diffraction in reciprocal space. In electron microscopy, correlation in the Fourier domain is used for estimating the resolution. In this paper, we report a method for estimating the spatial resolution of real images from a logarithmic intensity plot in the Fourier domain. The logarithmic intensity plots of test images indicated that the full width at half maximum of a Gaussian point spread function can be estimated from the images. The spatial resolution of imaging X-ray microtomography using Fresnel zone-plate optics was also estimated with this method. A cross section of a test object visualized with the imaging microtomography indicated that square-wave patterns up to 120-nm pitch were resolved. The logarithmic intensity plot was calculated from a tomographic cross section of brain tissue. The full width at half maximum of the point spread function estimated from the plot coincided with the resolution determined from the test object. These results indicated that the logarithmic intensity plot in the Fourier domain provides an alternative measure of the spatial resolution without explicitly defining a noise criterion.

  4. Terahertz holography for imaging amplitude and phase objects.

    PubMed

    Hack, Erwin; Zolliker, Peter

    2014-06-30

    A non-monochromatic THz Quantum Cascade Laser and an uncooled micro-bolometer array detector with VGA resolution are used in a beam-splitter free holographic set-up to measure amplitude and phase objects in transmission. Phase maps of the diffraction pattern are retrieved using the Fourier transform carrier fringe method; while a Fresnel-Kirchhoff back propagation algorithm is used to reconstruct the complex object image. A lateral resolution of 280 µm and a relative phase sensitivity of about 0.5 rad are estimated from reconstructed images of a metallic Siemens star and a polypropylene test structure, respectively. Simulations corroborate the experimental results.

  5. Fourier-based linear systems description of free-breathing pulmonary magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Capaldi, D. P. I.; Svenningsen, S.; Cunningham, I. A.; Parraga, G.

    2015-03-01

    Fourier-decomposition of free-breathing pulmonary magnetic resonance imaging (FDMRI) was recently piloted as a way to provide rapid quantitative pulmonary maps of ventilation and perfusion without the use of exogenous contrast agents. This method exploits fast pulmonary MRI acquisition of free-breathing proton (1H) pulmonary images and non-rigid registration to compensate for changes in position and shape of the thorax associated with breathing. In this way, ventilation imaging using conventional MRI systems can be undertaken but there has been no systematic evaluation of fundamental image quality measurements based on linear systems theory. We investigated the performance of free-breathing pulmonary ventilation imaging using a Fourier-based linear system description of each operation required to generate FDMRI ventilation maps. Twelve subjects with chronic obstructive pulmonary disease (COPD) or bronchiectasis underwent pulmonary function tests and MRI. Non-rigid registration was used to co-register the temporal series of pulmonary images. Pulmonary voxel intensities were aligned along a time axis and discrete Fourier transforms were performed on the periodic signal intensity pattern to generate frequency spectra. We determined the signal-to-noise ratio (SNR) of the FDMRI ventilation maps using a conventional approach (SNRC) and using the Fourier-based description (SNRF). Mean SNR was 4.7 ± 1.3 for subjects with bronchiectasis and 3.4 ± 1.8, for COPD subjects (p>.05). SNRF was significantly different than SNRC (p<.01). SNRF was approximately 50% of SNRC suggesting that the linear system model well-estimates the current approach.

  6. Detection of correlated fragments in a sequence of images by superimposed Fourier holograms

    NASA Astrophysics Data System (ADS)

    Pavlov, A. V.

    2016-08-01

    The problem of detecting correlated fragments in a sequence of images recorded by the superimposing holograms within the Fourier holography scheme with angular multiplication of a spatially modulated reference beam is considered. The approach to the solution of this problem is based on the properties of the variance of the image sum. It is shown that this problem can be solved by providing a constant distance between the signal and reference images when recording superimposed holograms and a partial mutual correlatedness of reference images. The detection efficiency is analysed from the point of view of estimated image data capacity, the degree of mutual correlation of reference images, and the hologram recording conditions. The results of a numerical experiment under the most complicated conditions (representation of images by realisations of homogeneous random fields) confirm the theoretical conclusions.

  7. Quantum Color Image Encryption Algorithm Based on A Hyper-Chaotic System and Quantum Fourier Transform

    NASA Astrophysics Data System (ADS)

    Tan, Ru-Chao; Lei, Tong; Zhao, Qing-Min; Gong, Li-Hua; Zhou, Zhi-Hong

    2016-09-01

    To improve the slow processing speed of the classical image encryption algorithms and enhance the security of the private color images, a new quantum color image encryption algorithm based on a hyper-chaotic system is proposed, in which the sequences generated by the Chen's hyper-chaotic system are scrambled and diffused with three components of the original color image. Sequentially, the quantum Fourier transform is exploited to fulfill the encryption. Numerical simulations show that the presented quantum color image encryption algorithm possesses large key space to resist illegal attacks, sensitive dependence on initial keys, uniform distribution of gray values for the encrypted image and weak correlation between two adjacent pixels in the cipher-image.

  8. High-definition Fourier transform infrared spectroscopic imaging of breast tissue

    NASA Astrophysics Data System (ADS)

    Leslie, L. Suzanne; Kadjacsy-Balla, Andre; Bhargava, Rohit

    2015-03-01

    Breast cancer diagnosis relies on staining serial sections of a biopsy in a process that can be time intensive and costly. Fourier transform infrared imaging (FT-IR) is a non-destructive, label-free chemical imaging technique that uses the vibrational structure of the biological molecules of the sample to provide contrast for images at any absorption peak in the mid-infrared. The full potential of spectroscopic imaging has been limited by the spatial resolution provided by most commercial instruments. By increasing the magnification and numerical aperture of the microscope, image pixel sizes on the order of 1.1 micron can be achieved, allowing HD FT-IR spectroscopic imaging to provide high quality images that could aid in histopathology, diagnosis, and studies of breast cancer progression.

  9. Digital watermarking algorithm research of color images based on quaternion Fourier transform

    NASA Astrophysics Data System (ADS)

    An, Mali; Wang, Weijiang; Zhao, Zhen

    2013-10-01

    A watermarking algorithm of color images based on the quaternion Fourier Transform (QFFT) and improved quantization index algorithm (QIM) is proposed in this paper. The original image is transformed by QFFT, the watermark image is processed by compression and quantization coding, and then the processed watermark image is embedded into the components of the transformed original image. It achieves embedding and blind extraction of the watermark image. The experimental results show that the watermarking algorithm based on the improved QIM algorithm with distortion compensation achieves a good tradeoff between invisibility and robustness, and better robustness for the attacks of Gaussian noises, salt and pepper noises, JPEG compression, cropping, filtering and image enhancement than the traditional QIM algorithm.

  10. Mid-infrared imaging Fourier transform spectrometry for high power fiber laser irradiated fiberglass composites

    NASA Astrophysics Data System (ADS)

    Acosta, R. I.; Gross, K. C.; Perram, G. P.

    2012-03-01

    New measurement techniques to study continuous wave (CW) laser-material interactions are emerging with the ability to monitor the evolving, spatial distribution of the state of the surface-gas boundary layer. A qualitative analysis of gas phase combustion plumes above the surface of laser irradiated fiberglass composites is developed from fast framing hyperspectral imagery observations. An imaging Fourier Transform Spectrometer (IFTS) operating in the mid-infrared (MWIR) with high framing rate has recently been developed at the Air Force Institute of Technology (AFIT) in collaboration with Telops Inc. A 320 x 256 indium antimonide (InSb) focal plane array with spectral response from 1.5 - 5.5 μm is mated with a Michelson interferometer to achieve spectral resolutions as high as 0.25 cm-1. The very fast 16- tap InSb array frames at 1.9 kHz for the full 320 x 256 frame size. The single pixel field of view of 0.3 mrad provides a spatial resolution of 1 mm at the minimum focal distance of 3 m. Painted and unpainted fiberglass composites are irradiated with a 1064 nm CW Nd:YAG laser for 60 s at 100 W in air at atmospheric pressure. Selective emission in the region of 2100 - 3200 cm-1 is readily evident and is used to develop a time-dependent spatial map of both temperature and plume constituents. The time evolution of gas phase combustion products such as CO and CO2 molecules are monitored, with a spectral resolution of 2 cm-1. High-speed imagery is obtained using a low-pass filter for the interferograms, illustrating significant turbulent behavior during laser irradiation. Spatial brightness temperature maps exceed 600 K. Spatial variation in the ratio of [CO2]/[CO] indicates an interplay between heterogeneous and homogeneous kinetics.

  11. Application of the fractional Fourier transform to image reconstruction in MRI.

    PubMed

    Parot, Vicente; Sing-Long, Carlos; Lizama, Carlos; Tejos, Cristian; Uribe, Sergio; Irarrazaval, Pablo

    2012-07-01

    The classic paradigm for MRI requires a homogeneous B(0) field in combination with linear encoding gradients. Distortions are produced when the B(0) is not homogeneous, and several postprocessing techniques have been developed to correct them. Field homogeneity is difficult to achieve, particularly for short-bore magnets and higher B(0) fields. Nonlinear magnetic components can also arise from concomitant fields, particularly in low-field imaging, or intentionally used for nonlinear encoding. In any of these situations, the second-order component is key, because it constitutes the first step to approximate higher-order fields. We propose to use the fractional Fourier transform for analyzing and reconstructing the object's magnetization under the presence of quadratic fields. The fractional fourier transform provides a precise theoretical framework for this. We show how it can be used for reconstruction and for gaining a better understanding of the quadratic field-induced distortions, including examples of reconstruction for simulated and in vivo data. The obtained images have improved quality compared with standard Fourier reconstructions. The fractional fourier transform opens a new paradigm for understanding the MR signal generated by an object under a quadratic main field or nonlinear encoding.

  12. Fourier transform infrared study of a phase transition in solid chlorodifluoromethane

    NASA Astrophysics Data System (ADS)

    Anderson, A.; Beardsall, A. J.; Fraser, Jim

    1994-01-01

    Infrared spectra of solid chlorodifluoromethane (CHClF2 or Freon 22) at temperatures between 12 K and 105 K have been recorded. Both lattice and internal mode regions have been investigated by utilizing two Fourier transform spectrometers, one for the far-infrared region (20 - 400 cm-1) and the other for the mid-infrared region (400 - 4000 cm-1). Evidence for a solid state phase transition at 55 +/- 5 K is presented. Multiplet structure for the nine internal modes is observed over a wide range of temperature and in most cases is shown to result from crystal field rather than isotopic or other effects. This indicates that both phases are ordered with rather large unit cells, and that the phase transition is therefore of a displacive type.

  13. Study on the algorithm of computational ghost imaging based on discrete fourier transform measurement matrix

    NASA Astrophysics Data System (ADS)

    Zhang, Leihong; Liang, Dong; Li, Bei; Kang, Yi; Pan, Zilan; Zhang, Dawei; Gao, Xiumin; Ma, Xiuhua

    2016-07-01

    On the basis of analyzing the cosine light field with determined analytic expression and the pseudo-inverse method, the object is illuminated by a presetting light field with a determined discrete Fourier transform measurement matrix, and the object image is reconstructed by the pseudo-inverse method. The analytic expression of the algorithm of computational ghost imaging based on discrete Fourier transform measurement matrix is deduced theoretically, and compared with the algorithm of compressive computational ghost imaging based on random measurement matrix. The reconstruction process and the reconstruction error are analyzed. On this basis, the simulation is done to verify the theoretical analysis. When the sampling measurement number is similar to the number of object pixel, the rank of discrete Fourier transform matrix is the same as the one of the random measurement matrix, the PSNR of the reconstruction image of FGI algorithm and PGI algorithm are similar, the reconstruction error of the traditional CGI algorithm is lower than that of reconstruction image based on FGI algorithm and PGI algorithm. As the decreasing of the number of sampling measurement, the PSNR of reconstruction image based on FGI algorithm decreases slowly, and the PSNR of reconstruction image based on PGI algorithm and CGI algorithm decreases sharply. The reconstruction time of FGI algorithm is lower than that of other algorithms and is not affected by the number of sampling measurement. The FGI algorithm can effectively filter out the random white noise through a low-pass filter and realize the reconstruction denoising which has a higher denoising capability than that of the CGI algorithm. The FGI algorithm can improve the reconstruction accuracy and the reconstruction speed of computational ghost imaging.

  14. Universal and special keys based on phase-truncated Fourier transform

    PubMed Central

    Qin, Wan; Peng, Xiang; Meng, Xiangfeng; Gao, Bruce

    2013-01-01

    We propose a novel optical asymmetric cryptosystem based on a phase-truncated Fourier transform. Two decryption keys independent of each other are generated. They are referred to as universal key and special key, respectively. Each of them can be used for decryption independently in absence of the other. The universal key is applicable to decrypt any ciphertext encoded by the same encryption key, but with poor legibility. On the contrary, the special key is adequate for legible decryption, but only valid for one ciphertext corresponding to the specified plaintext. A set of simulation results show the interesting performance of two types of de cryption keys. PMID:25339784

  15. Fourier-interpolation superresolution optical fluctuation imaging (fSOFi) (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Enderlein, Joerg; Stein, Simon C.; Huss, Anja; Hähnel, Dirk; Gregor, Ingo

    2016-02-01

    Stochastic Optical Fluctuation Imaging (SOFI) is a superresolution fluorescence microscopy technique which allows to enhance the spatial resolution of an image by evaluating the temporal fluctuations of blinking fluorescent emitters. SOFI is not based on the identification and localization of single molecules such as in the widely used Photoactivation Localization Microsopy (PALM) or Stochastic Optical Reconstruction Microscopy (STORM), but computes a superresolved image via temporal cumulants from a recorded movie. A technical challenge hereby is that, when directly applying the SOFI algorithm to a movie of raw images, the pixel size of the final SOFI image is the same as that of the original images, which becomes problematic when the final SOFI resolution is much smaller than this value. In the past, sophisticated cross-correlation schemes have been used for tackling this problem. Here, we present an alternative, exact, straightforward, and simple solution using an interpolation scheme based on Fourier transforms. We exemplify the method on simulated and experimental data.

  16. Quantitative phase imaging of arthropods

    PubMed Central

    Sridharan, Shamira; Katz, Aron; Soto-Adames, Felipe; Popescu, Gabriel

    2015-01-01

    Abstract. Classification of arthropods is performed by characterization of fine features such as setae and cuticles. An unstained whole arthropod specimen mounted on a slide can be preserved for many decades, but is difficult to study since current methods require sample manipulation or tedious image processing. Spatial light interference microscopy (SLIM) is a quantitative phase imaging (QPI) technique that is an add-on module to a commercial phase contrast microscope. We use SLIM to image a whole organism springtail Ceratophysella denticulata mounted on a slide. This is the first time, to our knowledge, that an entire organism has been imaged using QPI. We also demonstrate the ability of SLIM to image fine structures in addition to providing quantitative data that cannot be obtained by traditional bright field microscopy. PMID:26334858

  17. Quantitative phase imaging of arthropods.

    PubMed

    Sridharan, Shamira; Katz, Aron; Soto-Adames, Felipe; Popescu, Gabriel

    2015-01-01

    Classification of arthropods is performed by characterization of fine features such as setae and cuticles. An unstained whole arthropod specimen mounted on a slide can be preserved for many decades, but is difficult to study since current methods require sample manipulation or tedious image processing. Spatial light interference microscopy (SLIM) is a quantitative phase imaging (QPI) technique that is an add-on module to a commercial phase contrast microscope. We use SLIM to image a whole organism springtail Ceratophysella denticulata mounted on a slide. This is the first time, to our knowledge, that an entire organism has been imaged using QPI. We also demonstrate the ability of SLIM to image fine structures in addition to providing quantitative data that cannot be obtained by traditional bright field microscopy. PMID:26334858

  18. Quantitative phase imaging of arthropods

    NASA Astrophysics Data System (ADS)

    Sridharan, Shamira; Katz, Aron; Soto-Adames, Felipe; Popescu, Gabriel

    2015-11-01

    Classification of arthropods is performed by characterization of fine features such as setae and cuticles. An unstained whole arthropod specimen mounted on a slide can be preserved for many decades, but is difficult to study since current methods require sample manipulation or tedious image processing. Spatial light interference microscopy (SLIM) is a quantitative phase imaging (QPI) technique that is an add-on module to a commercial phase contrast microscope. We use SLIM to image a whole organism springtail Ceratophysella denticulata mounted on a slide. This is the first time, to our knowledge, that an entire organism has been imaged using QPI. We also demonstrate the ability of SLIM to image fine structures in addition to providing quantitative data that cannot be obtained by traditional bright field microscopy.

  19. Quantitative phase imaging of arthropods.

    PubMed

    Sridharan, Shamira; Katz, Aron; Soto-Adames, Felipe; Popescu, Gabriel

    2015-01-01

    Classification of arthropods is performed by characterization of fine features such as setae and cuticles. An unstained whole arthropod specimen mounted on a slide can be preserved for many decades, but is difficult to study since current methods require sample manipulation or tedious image processing. Spatial light interference microscopy (SLIM) is a quantitative phase imaging (QPI) technique that is an add-on module to a commercial phase contrast microscope. We use SLIM to image a whole organism springtail Ceratophysella denticulata mounted on a slide. This is the first time, to our knowledge, that an entire organism has been imaged using QPI. We also demonstrate the ability of SLIM to image fine structures in addition to providing quantitative data that cannot be obtained by traditional bright field microscopy.

  20. Identification of Earthquake Induced Damage Areas Using Fourier Transform and SPOT HRVIR Pan Images.

    PubMed

    Sertel, Elif

    2009-01-01

    A devastating earthquake with a magnitude of Mw 7.4 occurred on the North Anatolian Fault Zone (NAFZ) of Turkey on August 17, 1999 at 00:01:39 UTC (3:01 a.m. local time). The aim of this study is to propose a new approach to automatically identify earthquake induced damage areas which can provide valuable information to support emergency response and recovery assessment procedures. This research was conducted in the Adapazari inner city, covering a 3 × 3 km area, where 11,373 buildings collapsed as a result of the earthquake. SPOT high resolution visible infrared (HRVIR) Pan images obtained before (25 June 1999) and after (4 October 1999) the earthquake were used in the study. Five steps were employed to conduct the research and these are: (i) geometric and radiometric correction of satellite images, (ii) Fast Fourier Transform (FFT) of pre- and post-earthquake images and filtering the images in frequency domain, (iii) generating difference image using Inverse Fast Fourier Transform (IFFT) pre- and post- earthquake images, (iv) application of level slicing to difference image to identify the earthquake-induced damages, (v) accuracy assessment of the method using ground truth obtained from a 1/5,000 scale damage map. The total accuracy obtained in the research is 80.19 %, illustrating that the proposed method can be successfully used to automatically identify earthquake-induced damage areas.

  1. Identification of Earthquake Induced Damage Areas Using Fourier Transform and SPOT HRVIR Pan Images

    PubMed Central

    Sertel, Elif

    2009-01-01

    A devastating earthquake with a magnitude of Mw 7.4 occurred on the North Anatolian Fault Zone (NAFZ) of Turkey on August 17, 1999 at 00:01:39 UTC (3:01 a.m. local time). The aim of this study is to propose a new approach to automatically identify earthquake induced damage areas which can provide valuable information to support emergency response and recovery assessment procedures. This research was conducted in the Adapazari inner city, covering a 3 × 3 km area, where 11,373 buildings collapsed as a result of the earthquake. SPOT high resolution visible infrared (HRVIR) Pan images obtained before (25 June 1999) and after (4 October 1999) the earthquake were used in the study. Five steps were employed to conduct the research and these are: (i) geometric and radiometric correction of satellite images, (ii) Fast Fourier Transform (FFT) of pre- and post-earthquake images and filtering the images in frequency domain, (iii) generating difference image using Inverse Fast Fourier Transform (IFFT) pre- and post- earthquake images, (iv) application of level slicing to difference image to identify the earthquake-induced damages, (v) accuracy assessment of the method using ground truth obtained from a 1/5,000 scale damage map. The total accuracy obtained in the research is 80.19 %, illustrating that the proposed method can be successfully used to automatically identify earthquake-induced damage areas. PMID:22573966

  2. Image Reconstruction from Under sampled Fourier Data Using the Polynomial Annihilation Transform

    DOE PAGES

    Archibald, Richard K.; Gelb, Anne; Platte, Rodrigo

    2015-09-09

    Fourier samples are collected in a variety of applications including magnetic resonance imaging and synthetic aperture radar. The data are typically under-sampled and noisy. In recent years, l1 regularization has received considerable attention in designing image reconstruction algorithms from under-sampled and noisy Fourier data. The underlying image is assumed to have some sparsity features, that is, some measurable features of the image have sparse representation. The reconstruction algorithm is typically designed to solve a convex optimization problem, which consists of a fidelity term penalized by one or more l1 regularization terms. The Split Bregman Algorithm provides a fast explicit solutionmore » for the case when TV is used for the l1l1 regularization terms. Due to its numerical efficiency, it has been widely adopted for a variety of applications. A well known drawback in using TV as an l1 regularization term is that the reconstructed image will tend to default to a piecewise constant image. This issue has been addressed in several ways. Recently, the polynomial annihilation edge detection method was used to generate a higher order sparsifying transform, and was coined the “polynomial annihilation (PA) transform.” This paper adapts the Split Bregman Algorithm for the case when the PA transform is used as the l1 regularization term. In so doing, we achieve a more accurate image reconstruction method from under-sampled and noisy Fourier data. Our new method compares favorably to the TV Split Bregman Algorithm, as well as to the popular TGV combined with shearlet approach.« less

  3. Image Reconstruction from Under sampled Fourier Data Using the Polynomial Annihilation Transform

    SciTech Connect

    Archibald, Richard K.; Gelb, Anne; Platte, Rodrigo

    2015-09-09

    Fourier samples are collected in a variety of applications including magnetic resonance imaging and synthetic aperture radar. The data are typically under-sampled and noisy. In recent years, l1 regularization has received considerable attention in designing image reconstruction algorithms from under-sampled and noisy Fourier data. The underlying image is assumed to have some sparsity features, that is, some measurable features of the image have sparse representation. The reconstruction algorithm is typically designed to solve a convex optimization problem, which consists of a fidelity term penalized by one or more l1 regularization terms. The Split Bregman Algorithm provides a fast explicit solution for the case when TV is used for the l1l1 regularization terms. Due to its numerical efficiency, it has been widely adopted for a variety of applications. A well known drawback in using TV as an l1 regularization term is that the reconstructed image will tend to default to a piecewise constant image. This issue has been addressed in several ways. Recently, the polynomial annihilation edge detection method was used to generate a higher order sparsifying transform, and was coined the “polynomial annihilation (PA) transform.” This paper adapts the Split Bregman Algorithm for the case when the PA transform is used as the l1 regularization term. In so doing, we achieve a more accurate image reconstruction method from under-sampled and noisy Fourier data. Our new method compares favorably to the TV Split Bregman Algorithm, as well as to the popular TGV combined with shearlet approach.

  4. A non-linear preprocessing for opto-digital image encryption using multiple-parameter discrete fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Azoug, Seif Eddine; Bouguezel, Saad

    2016-01-01

    In this paper, a novel opto-digital image encryption technique is proposed by introducing a new non-linear preprocessing and using the multiple-parameter discrete fractional Fourier transform (MPDFrFT). The non-linear preprocessing is performed digitally on the input image in the spatial domain using a piecewise linear chaotic map (PLCM) coupled with the bitwise exclusive OR (XOR). The resulting image is multiplied by a random phase mask before applying the MPDFrFT to whiten the image. Then, a chaotic permutation is performed on the output of the MPDFrFT using another PLCM different from the one used in the spatial domain. Finally, another MPDFrFT is applied to obtain the encrypted image. The parameters of the PLCMs together with the multiple fractional orders of the MPDFrFTs constitute the secret key for the proposed cryptosystem. Computer simulation results and security analysis are presented to show the robustness of the proposed opto-digital image encryption technique and the great importance of the new non-linear preprocessing introduced to enhance the security of the cryptosystem and overcome the problem of linearity encountered in the existing permutation-based opto-digital image encryption schemes.

  5. Fourier transforms with rotations on circles or ellipses in signal and image processing

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.

    2015-03-01

    Fast unitary transforms are widely used in different areas such as data compression, pattern recognition and image reconstruction, interpolation, linear filtering, and spectral analysis. In this paper, we analyze the general concept of rotation and processing of data around not only circles but ellipses, in general. For that, we describe and analyze the general concept of the elliptic Fourier transform which was developed by Grigoryan in 2009. The block-wise representation of the discrete Fourier transform is considered in the real space, which is effective and that can be generalized to obtain new methods in spectral analysis. The N-point Elliptic discrete Fourier transform (EDFT) uses as a basic 2 × 2 transformation the rotations around ellipses. The EDFT distinguishes well from the carrying frequencies of the signal in both real and imaginary parts. It also has a simple inverse matrix. It is parameterized and includes also the DFT. Our preliminary results show that by using different parameters, the EDFT can be used effectively for solving many problems in signal and image processing field, in which includes problems such as image enhancement, filtration, encryption and many others.

  6. Perfusion and ventilation filters for Fourier-decomposition MR lung imaging.

    PubMed

    Wujcicki, Artur; Corteville, Dominique; Materka, Andrzej; Schad, Lothar R

    2015-03-01

    MR imaging without the use of contrast agents has recently been used for creating perfusion and ventilation functional lung images. The technique incorporates frequency- or wavelet-domain filters to separate the MR signal components. This paper presents a new, subject-adaptive algorithm for perfusion and ventilation filters design. The proposed algorithm uses a lung signal model for separation of the signal components in the frequency domain. Non-stationary lung signals are handled by a short time Fourier transform. This method was applied to sets of 192 and 90 co-registered non-contrast MR lung images measured for five healthy subjects at the rate of 3,33 images per second, using different slice thicknesses. In each case, the resulted perfusion and ventilation images showed a smaller amount of mutual information, when compared to those obtained using the known lowpass/highpass filter approach.

  7. Evaluation of Fourier transform coefficients for the diagnosis of rheumatoid arthritis from diffuse optical tomography images

    NASA Astrophysics Data System (ADS)

    Montejo, Ludguier D.; Jia, Jingfei; Kim, Hyun K.; Hielscher, Andreas H.

    2013-03-01

    We apply the Fourier Transform to absorption and scattering coefficient images of proximal interphalangeal (PIP) joints and evaluate the performance of these coefficients as classifiers using receiver operator characteristic (ROC) curve analysis. We find 25 features that yield a Youden index over 0.7, 3 features that yield a Youden index over 0.8, and 1 feature that yields a Youden index over 0.9 (90.0% sensitivity and 100% specificity). In general, scattering coefficient images yield better one-dimensional classifiers compared to absorption coefficient images. Using features derived from scattering coefficient images we obtain an average Youden index of 0.58 +/- 0.16, and an average Youden index of 0.45 +/- 0.15 when using features from absorption coefficient images.

  8. Depth resolved hyperspectral imaging spectrometer based on structured light illumination and Fourier transform interferometry.

    PubMed

    Choi, Heejin; Wadduwage, Dushan; Matsudaira, Paul T; So, Peter T C

    2014-10-01

    A depth resolved hyperspectral imaging spectrometer can provide depth resolved imaging both in the spatial and the spectral domain. Images acquired through a standard imaging Fourier transform spectrometer do not have the depth-resolution. By post processing the spectral cubes (x, y, λ) obtained through a Sagnac interferometer under uniform illumination and structured illumination, spectrally resolved images with depth resolution can be recovered using structured light illumination algorithms such as the HiLo method. The proposed scheme is validated with in vitro specimens including fluorescent solution and fluorescent beads with known spectra. The system is further demonstrated in quantifying spectra from 3D resolved features in biological specimens. The system has demonstrated depth resolution of 1.8 μm and spectral resolution of 7 nm respectively.

  9. High-definition Fourier transform infrared spectroscopic imaging of prostate tissue

    NASA Astrophysics Data System (ADS)

    Wrobel, Tomasz P.; Kwak, Jin Tae; Kadjacsy-Balla, Andre; Bhargava, Rohit

    2016-03-01

    Histopathology forms the gold standard for cancer diagnosis and therapy, and generally relies on manual examination of microscopic structural morphology within tissue. Fourier-Transform Infrared (FT-IR) imaging is an emerging vibrational spectroscopic imaging technique, especially in a High-Definition (HD) format, that provides the spatial specificity of microscopy at magnifications used in diagnostic surgical pathology. While it has been shown for standard imaging that IR absorption by tissue creates a strong signal where the spectrum at each pixel is a quantitative "fingerprint" of the molecular composition of the sample, here we show that this fingerprint also enables direct digital pathology without the need for stains or dyes for HD imaging. An assessment of the potential of HD imaging to improve diagnostic pathology accuracy is presented.

  10. Histopathology mapping of biochemical changes in myocardial infarction by Fourier transform infrared spectral imaging.

    PubMed

    Yang, Tian T; Weng, Shi F; Zheng, Na; Pan, Qing H; Cao, Hong L; Liu, Liang; Zhang, Hai D; Mu, Da W

    2011-04-15

    Fourier transform infrared (FTIR) imaging and microspectroscopy have been extensively applied in the identification and investigation of both healthy and diseased tissues. FTIR imaging can be used to determine the biodistribution of several molecules of interest (carbohydrates, lipids, proteins) for tissue analysis, without the need for prior staining of these tissues. Molecular structure data, such as protein secondary structure and collagen triple helix exhibits, can also be obtained from the same analysis. Thus, several histopathological lesions, for example myocardial infarction, can be identified from FTIR-analyzed tissue images, the latter which can allow for more accurate discrimination between healthy tissues and pathological lesions. Accordingly, we propose FTIR imaging as a new tool integrating both molecular and histopathological assessment to investigate the degree of pathological changes in tissues. In this study, myocardial infarction is presented as an illustrative example of the wide potential of FTIR imaging for biomedical applications.

  11. A two-phase approach to Fourier transform ion mobility time-of-flight mass spectrometry.

    PubMed

    Clowers, Brian H; Siems, William F; Yu, Zhihao; Davis, Austen L

    2015-10-21

    It is well known that the duty cycle of common drift-tube ion mobility experiments is often below 1%. However, multiplexing approaches such as Fourier and Hadamard pulsing schemes have been shown to independently enhance the throughput of ion mobility spectrometry (IMS) experiments to levels that approach 50%. While challenges remain to their broad scale implementation we describe a new Fourier transform (FT) IMS experiment that is directly compatible with standard drift tube ion mobility mass spectrometers (DT-IMMS). Compared to previous FT-IMS experiments, our new approach requires only a single gate and circumvents the need for signal apodization by combining data from two frequency pulsing sequences 180° out of phase. Assessment of our initial results highlights an increase in signal-to-noise (SNR) relative to both previous implementations FT-IMS experiments and signal averaged (SA) experiments. For select tetraalkylammonium salts SNR improvements of more than one order of magnitude are routinely possible. To explore the performance metrics associated with the technique a number of experimental variables were systematically altered including frequency sweep range, sweep time, and data acquisition time. Using this experimental design we present the key aspects, considerations, and minimum resources necessary for other IMS researchers to incorporate this operational mode into their research. The two-phase FT-IMMS technique offers a tractable mechanism to enhance sensitivity for IMMS measurements and its broad-scale adoption by IMMS researchers promises to enhance the acquisition speed for mobility measurements using hybrid instrumentation.

  12. Quantitative zonal differentiation of articular cartilage by microscopic magnetic resonance imaging, polarized light microscopy, and Fourier-transform infrared imaging.

    PubMed

    Lee, Ji Hyun; Xia, Yang

    2013-06-01

    This study aimed to synchronize the zonal differentiation of the full-thickness articular cartilage by three micro-imaging techniques, namely microscopic magnetic resonance imaging (µMRI), polarized light microscopy (PLM), and Fourier-transform infrared imaging (FTIRI). Eighteen cartilage-bone blocks from three canine humeral joints were imaged by: (a) µMRI T2 relaxation at 0° and 55° orientations in a 7 T magnetic field, (b) PLM optical retardation and azimuthal angle, and (c) FTIRI amide I and amide II anisotropies at 0° and 90° polarizations relative to the articular surface. In addition, µMRI T1 relaxation was imaged before and after the tissue being immersed in gadolinium (contrast agent) solution, to calculate the proteoglycan concentration. A set of previously established criteria in cartilage imaging was revised. The new criteria could simultaneously correlate the thicknesses of the three consecutive subtissue zones in articular cartilage among these imaging techniques.

  13. Phase demodulation using adaptive windowed Fourier transform based on Hilbert-Huang transform.

    PubMed

    Wang, Chenxing; Da, Feipeng

    2012-07-30

    The phase demodulation method of adaptive windowed Fourier transform (AWFT) is proposed based on Hilbert-Huang transform (HHT). HHT is analyzed and performed on fringe pattern to obtain instantaneous frequencies firstly. These instantaneous frequencies are further analyzed based on the condition of AWFT to locate local stationary areas where the fundamental spectrum will not be interfered by high-order spectrum. Within each local stationary area, the fundamental spectrum can be extracted accurately and adaptively by using AWFT with the background, which has been determined previously with the presented criterion during HHT, being eliminated to remove the zero-spectrum. This method is adaptive and unconstrained by any precondition for the measured phase. Experiments demonstrate its robustness and effectiveness for measuring the object with discontinuities or complex surface.

  14. Imaging Fourier transform spectroscopy of the boundary layer plume from laser irradiated polymers and carbon materials

    NASA Astrophysics Data System (ADS)

    Acosta, Roberto I.

    The high-energy laser (HEL) lethality community needs for enhanced laser weapons systems requires a better understanding of a wide variety of emerging threats. In order to reduce the dimensionality of laser-materials interaction it is necessary to develop novel predictive capabilities of these events. The objective is to better understand the fundamentals of laser lethality testing by developing empirical models from hyperspectral imagery, enabling a robust library of experiments for vulnerability assessments. Emissive plumes from laser irradiated fiberglass reinforced polymers (FRP), poly(methyl methacrylate) (PMMA) and porous graphite targets were investigated primarily using a mid-wave infrared (MWIR) imaging Fourier transform spectrometer (FTS). Polymer and graphite targets were irradiated with a continuous wave (cw) fiber lasers. Data was acquired with a spectral resolution of 2 cm-1 and spatial resolution as high as 0.52 mm2 per pixel. Strong emission from H2O, CO, CO2 and hydrocarbons were observed in the MWIR between 1900-4000 cm-1. A single-layer radiative transfer model was developed to estimate spatial maps of temperature and column densities of CO and CO2 from the hyperspectral imagery of the boundary layer plume. The spectral model was used to compute the absorption cross sections of CO and CO2, using spectral line parameters from the high temperature extension of the HITRAN. Also, spatial maps of gas-phase temperature and methyl methacrylate (MMA) concentration were developed from laser irradiated carbon black-pigmented PMMA at irradiances of 4-22 W/cm2. Global kinetics interplay between heterogeneous and homogeneous combustion kinetics are shown from experimental observations at high spatial resolutions. Overall the boundary layer profile at steady-state is consistent with CO being mainly produced at the surface by heterogeneous reactions followed by a rapid homogeneous combustion in the boundary layer towards buoyancy.

  15. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    DOEpatents

    Olivier, Scot S.; Werner, John S.; Zawadzki, Robert J.; Laut, Sophie P.; Jones, Steven M.

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  16. Acceleration of integral imaging based incoherent Fourier hologram capture using graphic processing unit.

    PubMed

    Jeong, Kyeong-Min; Kim, Hee-Seung; Hong, Sung-In; Lee, Sung-Keun; Jo, Na-Young; Kim, Yong-Soo; Lim, Hong-Gi; Park, Jae-Hyeung

    2012-10-01

    Speed enhancement of integral imaging based incoherent Fourier hologram capture using a graphic processing unit is reported. Integral imaging based method enables exact hologram capture of real-existing three-dimensional objects under regular incoherent illumination. In our implementation, we apply parallel computation scheme using the graphic processing unit, accelerating the processing speed. Using enhanced speed of hologram capture, we also implement a pseudo real-time hologram capture and optical reconstruction system. The overall operation speed is measured to be 1 frame per second.

  17. Imaging the in-plane magnetization in a Co microstructure by Fourier transform holography.

    PubMed

    Tieg, C; Frömter, R; Stickler, D; Hankemeier, S; Kobs, A; Streit-Nierobisch, S; Gutt, C; Grübel, G; Oepen, H P

    2010-12-20

    We report on experiments using Fourier transform holography to image the in-plane magnetization of a magnetic microstructure. Magnetic sensitivity is achieved via the x-ray magnetic circular dichroism effect by recording holograms in transmission at off-normal incidence. The reference beam is defined by a narrow hole milled at an inclined angle into the opaque mask. We present magnetic domain images of an in-plane magnetized cobalt element with a size of 2 μm × 2 μm× 20 nm. The domain pattern shows a multi-vortex state that deviates from the simple Landau ground state.

  18. Phase retrieval from speckle images.

    PubMed

    Rondeau, Xavier; Thiébaut, Eric; Tallon, Michel; Foy, Renaud

    2007-10-01

    In ground-based astronomy, the inverse problem of phase retrieval from speckle images is a means to calibrate static aberrations for correction by active optics. It can also be used to sense turbulent wavefronts. However, the number of local minima drastically increases with the turbulence strength, mainly because of phase wrapping ambiguities. Multifocal phase diversity has been considered to overcome some ambiguities of the phase retrieval problem. We propose an effective algorithm for phase retrieval from a single focused image. Our algorithm makes use of a global optimization strategy and an automatically tuned smoothness prior to overcome local minima and phase degeneracies. We push the limit of D/r(0)=4 achieved by Irwan and Lane [J. Opt. Soc. Am. A.15, 2302 (1998)] up to D/r(0)=11, which is a major improvement owing to the drastic increase in the problem complexity. We estimate the performances of our approach from consistent simulations for different turbulence strengths and noise levels (down to 1500 photons per image). We also investigate the benefit of temporal correlation.

  19. Fourier synthesis image reconstruction by use of one-dimensional position-sensitive detectors.

    PubMed

    Kotoku, Jun'ichi; Makishima, Kazuo; Okada, Yuu; Negoro, Hitoshi; Terada, Yukikatsu; Kaneda, Hidehiro; Oda, Minoru

    2003-07-10

    An improvement of Fourier synthesis optics for hard x-ray imaging is described, and the basic performance of the new optics is confirmed through numerical simulations. The original concept of the Fourier synthesis imager utilizes nonposition-sensitive hard x-ray detectors coupled to individual bigrid modulation collimators. The improved concept employs a one-dimensional position-sensitive detector (such as a CdTe strip detector) instead of the second grid layer of each bigrid modulation collimator. This improves the imaging performance in several respects over the original design. One performance improvement is a two-fold increase in the average transmission, from 1/4 to 1/2. The second merit is that both the sine and cosine components can be derived from a single grid-detector module, and hence the number of imaging modules can be halved. Furthermore, it provides information along the depth direction simultaneously. This in turn enables a three-dimensional imaging hard x-ray microscope for medical diagnostics, incorporating radioactive tracers. A conceptual design of such a microscope is presented, designed to provide a field of view of 4 mm and a spatial resolution of 400 microm.

  20. Quantitative phase imaging by single-shot Hilbert-Huang phase microscopy.

    PubMed

    Trusiak, Maciej; Mico, Vicente; Garcia, Javier; Patorski, Krzysztof

    2016-09-15

    We propose a novel single-shot Hilbert-Huang transform-based algorithm applied to digital holographic microscopy (DHM) for robust, fast, and accurate single-shot quantitative phase imaging in on-axis and off-axis configurations. Fringe pattern with possible defects and closed fringes are adaptively filtered and accurately phase demodulated using local fringe direction estimation. Experimental validation of the proposed techniques is presented as the DHM study of microbeads and red blood cells phase samples. Obtained results compare very favorably with the Fourier approach (off-axis) and temporal phase shifting (on-axis). PMID:27628393

  1. Field experiment and image reconstruction using a Fourier telescopy imaging system over a 600-m-long horizontal path.

    PubMed

    Yu, Shu-Hai; Dong, Lei; Liu, Xin-Yue; Lin, Xu-Dong; Megn, Hao-Ran; Zhong, Xing

    2016-08-20

    To confirm the effect of uplink atmospheric turbulence on Fourier telescopy (FT), we designed a system for far-field imaging, utilizing a T-type laser transmitting configuration with commercially available hardware, except for a green imaging laser. The horizontal light transmission distance for both uplink and downlink was ∼300  m. For both the transmitting and received beams, the height upon the ground was below 1 m. The imaging laser's pointing accuracy was ∼9.3  μrad. A novel image reconstruction approach was proposed, yielding significantly improved quality and Strehl ratio of reconstructed images. From the reconstruction result, we observed that the tip/tilt aberration is tolerated by the FT system even for Changchun's atmospheric coherence length parameter (r0) below 3 cm. The resolution of the reconstructed images was ∼0.615  μrad. PMID:27556991

  2. In-vivo human corneal nerve imaging using Fourier-domain OCT

    NASA Astrophysics Data System (ADS)

    Shin, Jun Geun; Lee, Byeong Ha; Eom, Tae Joong; Hwang, Ho Sik

    2015-03-01

    We have imaged human corneal nerve bundles by using real-time Fourier-domain OCT (FD-OCT). Corneal nerves contribute to the maintenance of healthy ocular surface owing to their trophic influences on the corneal epithelium. The FD-OCT system was based on a swept laser of a 50 kHz sweeping rate and 1.31 μm center wavelength. At the area including sclera, limbus, and cornea, we could successfully get the in-vivo tomograms of the corneal nerve bundles. The scan range was 5 x 5mm. In this study, the A-scan images in each B-scan were realigned to have a flat air-surface boundary in the final B-scan image. With this effort, we could align corneal nerve bundle in a same depth and get the 3D image showing the branched and threadlike corneal nerve bundles.

  3. Fourier transform infrared imaging analysis in discrimination studies of St. John's wort (Hypericum perforatum).

    PubMed

    Huck-Pezzei, V A; Pallua, J D; Pezzei, C; Bittner, L K; Schönbichler, S A; Abel, G; Popp, M; Bonn, G K; Huck, C W

    2012-10-01

    In the present study, Fourier transform infrared (FTIR) imaging and data analysis methods were combined to study morphological and molecular patterns of St. John's wort (Hypericum perforatum) in detail. For interpretation, FTIR imaging results were correlated with histological information gained from light microscopy (LM). Additionally, we tested several evaluation processes and optimized the methodology for use of complex FTIR microscopic images to monitor molecular patterns. It is demonstrated that the combination of the used spectroscopic method with LM enables a more distinct picture, concerning morphology and distribution of active ingredients, to be gained. We were able to obtain high-quality FTIR microscopic imaging results and to distinguish different tissue types with their chemical ingredients.

  4. Automated segmentation of intramacular layers in Fourier domain optical coherence tomography structural images from normal subjects

    PubMed Central

    Zhang, Xusheng; Yousefi, Siavash; An, Lin

    2012-01-01

    Abstract. Segmentation of optical coherence tomography (OCT) cross-sectional structural images is important for assisting ophthalmologists in clinical decision making in terms of both diagnosis and treatment. We present an automatic approach for segmenting intramacular layers in Fourier domain optical coherence tomography (FD-OCT) images using a searching strategy based on locally weighted gradient extrema, coupled with an error-removing technique based on statistical error estimation. A two-step denoising preprocess in different directions is also employed to suppress random speckle noise while preserving the layer boundary as intact as possible. The algorithms are tested on the FD-OCT volume images obtained from four normal subjects, which successfully identify the boundaries of seven physiological layers, consistent with the results based on manual determination of macular OCT images. PMID:22559689

  5. MightySat II.1 Fourier-transform hyperspectral imager payload performance

    NASA Astrophysics Data System (ADS)

    Otten, Leonard J.; Sellar, R. Glenn; Rafert, J. Bruce

    1995-12-01

    Using a new microsat called MightySat II as a platform, Kestrel Corporation is designing and building the first Fourier transform hyperspectral imager (FTHSI) to be operated from a spacecraft. This payload will also be the first to fly on the Phillips Laboratory MightySat II spacecraft series, a new, innovative approach, to affordable space testing of high risk, high payoff technologies. Performance enhancements offered by the Fourier transform approach have shown it to be one of the more promising spaceborne hyperspectral concepts. Simulations of the payload's performance have shown that the instrument is capable of separating a wide range of subtle spectral differences. Variations in the return from the Georges Bank and shoals are discernible and various types of coastal grasses (sea oats and spartina) can be isolated against a sand background.

  6. Prediction of image partitions using Fourier descriptors: application to segmentation-based coding schemes.

    PubMed

    Marqués, F; Llorens, B; Gasull, A

    1998-01-01

    This paper presents a prediction technique for partition sequences. It uses a region-by-region approach that consists of four steps: region parameterization, region prediction, region ordering, and partition creation. The time evolution of each region is divided into two types: regular motion and shape deformation. Both types of evolution are parameterized by means of the Fourier descriptors and they are separately predicted in the Fourier domain. The final predicted partition is built from the ordered combination of the predicted regions, using morphological tools. With this prediction technique, two different applications are addressed in the context of segmentation-based coding approaches. Noncausal partition prediction is applied to partition interpolation, and examples using complete partitions are presented. In turn, causal partition prediction is applied to partition extrapolation for coding purposes, and examples using complete partitions as well as sequences of binary images--shape information in video object planes (VOPs)--are presented. PMID:18276271

  7. Utilization of a liquid crystal spatial light modulator in a gray scale detour phase method for Fourier holograms.

    PubMed

    Makey, Ghaith; El-Daher, Moustafa Sayem; Al-Shufi, Kanj

    2012-11-10

    This paper introduces a new modification for the well-known binary detour phase method, which is largely used to represent Fourier holograms; the modification utilizes gray scale level control provided by a liquid crystal spatial light modulator to improve the traditional binary detour phase. Results are shown by both simulation and experiment.

  8. A no-key-exchange secure image sharing scheme based on Shamir's three-pass cryptography protocol and the multiple-parameter fractional Fourier transform.

    PubMed

    Lang, Jun

    2012-01-30

    In this paper, we propose a novel secure image sharing scheme based on Shamir's three-pass protocol and the multiple-parameter fractional Fourier transform (MPFRFT), which can safely exchange information with no advance distribution of either secret keys or public keys between users. The image is encrypted directly by the MPFRFT spectrum without the use of phase keys, and information can be shared by transmitting the encrypted image (or message) three times between users. Numerical simulation results are given to verify the performance of the proposed algorithm.

  9. Temperature measurement of an axisymmetric flame using phase shift holographic interferometry with fast Fourier transform

    NASA Astrophysics Data System (ADS)

    Tieng, S. M.; Lai, W. Z.

    Because of the importance of the temperature scalar measurements in combination diagonostics, application of phase shift holographic interferometry to temperature measurement of an axisymmetrically premixed flame was experimentally investigated. The test apparatus is an axisymmetric Bunsen burner. Propane of 99 percent purity is used as the gaseous fuel. A fast Fourier transform, a more efficient and accurate approach for Abel inversion, is used for reconstructed the axisymmetric temperature field from the interferometric data. The temperature distribution is compared with the thermocouple-measured values. The comparison shows that the proposed technique is satisfactory. The result errors are analyzed in detail. It is shown that this technique overcomes most of the earlier problems and limitations detrimental to the conventional holographic interferometry.

  10. Remote measurement of highly toxic vapors by scanning imaging Fourier-transform spectrometry

    NASA Astrophysics Data System (ADS)

    Harig, Roland; Rusch, Peter; Dyer, Chris; Jones, Anita; Moseley, Richard; Truscott, Benjamin

    2005-11-01

    In the case of chemical accidents, terrorist attacks, or war, hazardous compounds may be released into the atmosphere. Remote sensing by Fourier-transform infrared spectrometry allows identification and quantification of these hazardous clouds. The output of current standoff detection systems is a yes/no decision by an automatic identification algorithm that analyses the measured spectrum. The interpretation of the measured spectrum by the operator is complicated and thus this task requires an expert. Even if a scanning system is used for surveillance of a large area the operator is dependent on the decision of the algorithm. In contrast to that, imaging systems allow automatic identification but also simple interpretation of the result, the image of the cloud. Therefore, an imaging spectrometer, the scanning infrared gas imaging system (SIGIS) has been developed. The system is based on an interferometer with a single detector element (Bruker OPAG 22) in combination with a telescope and a synchronised scanning mirror. The results of the analyses of the spectra are displayed by an overlay of a false colour image, the "chemical cloud image", on a video image. In this work, the first application of the system as chemical warfare agent identification and imaging system is described. The system, the data analysis method, and results of measurements of chemical warfare agents are presented.

  11. Fourier spatial frequency analysis for image classification: training the training set

    NASA Astrophysics Data System (ADS)

    Johnson, Timothy H.; Lhamo, Yigah; Shi, Lingyan; Alfano, Robert R.; Russell, Stewart

    2016-04-01

    The Directional Fourier Spatial Frequencies (DFSF) of a 2D image can identify similarity in spatial patterns within groups of related images. A Support Vector Machine (SVM) can then be used to classify images if the inter-image variance of the FSF in the training set is bounded. However, if variation in FSF increases with training set size, accuracy may decrease as the size of the training set increases. This calls for a method to identify a set of training images from among the originals that can form a vector basis for the entire class. Applying the Cauchy product method we extract the DFSF spectrum from radiographs of osteoporotic bone, and use it as a matched filter set to eliminate noise and image specific frequencies, and demonstrate that selection of a subset of superclassifiers from within a set of training images improves SVM accuracy. Central to this challenge is that the size of the search space can become computationally prohibitive for all but the smallest training sets. We are investigating methods to reduce the search space to identify an optimal subset of basis training images.

  12. Modeling the viscoplastic micromechanical response of two-phase materials using fast Fourier transforms

    SciTech Connect

    Lebensohn, Ricardo A; Lee, Sukbin; Rollett, Anthony D

    2009-01-01

    A viscoplastic approach using the Fast Fourier Transform (FFT) method for obtaining local mechanical response is utilized to study microstructure-property relationships in composite materials. Specifically, three-dimensional, two-phase digital materials containing isotropically coarsened particles surrounded by a matrix phase, generated through a Kinetic Monte Carlo Potts model for Ostwald ripening, are used as instantiations in order to calculate the stress and strain rate fields under uniaxial tension. The effects of the morphology of the matrix phase, the volume fraction and the contiguity of particles, and the polycrystallinity of matrix phase, on the stress and strain rate fields under uniaxial tension are examined. It is found that the first moments of the stress and strain rate fields have a different dependence on the particle volume fraction and the particle contiguity from their second moments. The average stresses and average strain rates of both phases and of the overall composite have rather simple relationships with the particle volume fraction whereas their standard deviations vary strongly, especially when the particle volume fraction is high, and the contiguity of particles has a noticeable effect on the mechanical response. It is also found that the shape of stress distribution in the BCC hard particle phase evolves as the volume fraction of particles in the composite varies, such that it agrees with the stress field in the BCC polycrystal as the volume of particles approaches unity. Finally, it is observed that the stress and strain rate fields in the microstructures with a polycrystalline matrix are less sensitive to changes in volume fraction and contiguity of particles.

  13. Fourier domain pump-probe optical coherence tomography imaging of Melanin

    PubMed Central

    Jacob, Desmond; Shelton, Ryan L.; Applegate, Brian E.

    2010-01-01

    We report the development of a two-color Fourier domain Pump-Probe Optical Coherence Tomography (PPOCT) system. Tissue phantom experiments to characterize the system performance demonstrated imaging depths in excess of 725 μm, nearly comparable to the base Optical Coherence Tomography system. PPOCT A-line rates were also demonstrated in excess of 1 kHz. The physical origin of the PPOCT signal was investigated with a series of experiments which revealed that the signal is a mixture of short and long lifetime component signals. The short lifetime component was attributed to transient absorption while the long lifetime component may be due to a mixture of transient absorption and thermal effects. Ex vivo images of porcine iris demonstrated the potential for imaging melanin in the eye, where cancer of the melanocytes is the most common form of eye cancer in adults. PMID:20588366

  14. Fourier transform acousto-optic imaging with a custom-designed CMOS smart-pixels array.

    PubMed

    Barjean, Kinia; Contreras, Kevin; Laudereau, Jean-Baptiste; Tinet, Éric; Ettori, Dominique; Ramaz, François; Tualle, Jean-Michel

    2015-03-01

    We report acousto-optic imaging (AOI) into a scattering medium using a Fourier Transform (FT) analysis to achieve axial resolution. The measurement system was implemented using a CMOS smart-pixels sensor dedicated to the real-time analysis of speckle patterns. This first proof-of-principle of FT-AOI demonstrates some of its potential advantages, with a signal-to-noise ratio comparable to the one obtained without axial resolution, and with an acquisition rate compatible with a use on living biological tissue.

  15. High-resolution Fourier hologram synthesis from photographic images through computing the light field.

    PubMed

    Chen, Ni; Ren, Zhenbo; Lam, Edmund Y

    2016-03-01

    We present a technique for synthesizing the Fourier hologram of a three-dimensional scene from its light field. The light field captures the volumetric information of an object, and an important advantage is that it does not require coherent illumination, as in conventional holography. In this work, we show how to obtain a high-resolution digital hologram with the light field obtained from a series of photographic images captured along the optical axis. The method is verified both by simulations and experimentally captured light field.

  16. Imaging open-path Fourier transform infrared spectrometer for 3D cloud profiling

    NASA Astrophysics Data System (ADS)

    Rentz Dupuis, Julia; Mansur, David J.; Vaillancourt, Robert; Carlson, David; Evans, Thomas; Schundler, Elizabeth; Todd, Lori; Mottus, Kathleen

    2009-05-01

    OPTRA is developing an imaging open-path Fourier transform infrared (I-OP-FTIR) spectrometer for 3D profiling of chemical and biological agent simulant plumes released into test ranges and chambers. An array of I-OP-FTIR instruments positioned around the perimeter of the test site, in concert with advanced spectroscopic algorithms, enables real time tomographic reconstruction of the plume. The approach is intended as a referee measurement for test ranges and chambers. This Small Business Technology Transfer (STTR) effort combines the instrumentation and spectroscopic capabilities of OPTRA, Inc. with the computed tomographic expertise of the University of North Carolina, Chapel Hill.

  17. Design of spatio-temporally modulated static infrared imaging Fourier transform spectrometer.

    PubMed

    Wang, WenCong; Liang, JingQiu; Liang, ZhongZhu; Lü, JinGuang; Qin, YuXin; Tian, Chao; Wang, WeiBiao

    2014-08-15

    A novel static medium wave infrared (MWIR) imaging Fourier transform spectrometer (IFTS) is conceptually proposed and experimentally demonstrated. In this system, the moving mirror in traditional temporally modulated IFTS is replaced by multi-step micro-mirrors to realize the static design. Compared with the traditional spatially modulated IFTS, they have no slit system and are superior with larger luminous flux and higher energy efficiency. The use of the multi-step micro-mirrors can also make the system compact and light.

  18. Analysis of the Advantages and Limitations of Stationary Imaging Fourier Transform Spectrometer. Revised

    NASA Technical Reports Server (NTRS)

    Beecken, Brian P.; Kleinman, Randall R.

    2004-01-01

    New developments in infrared sensor technology have potentially made possible a new space-based system which can measure far-infrared radiation at lower costs (mass, power and expense). The Stationary Imaging Fourier Transform Spectrometer (SIFTS) proposed by NASA Langley Research Center, makes use of new detector array technology. A mathematical model which simulates resolution and spectral range relationships has been developed for analyzing the utility of such a radically new approach to spectroscopy. Calculations with this forward model emulate the effects of a detector array on the ability to retrieve accurate spectral features. Initial computations indicate significant attenuation at high wavenumbers.

  19. X-ray Phase Imaging Microscopy with Two-Dimensional Knife-Edge Filters

    NASA Astrophysics Data System (ADS)

    Choi, Jaeho; Park, Yong-Sung

    2012-04-01

    A novel scheme of X-ray differential phase imaging was implemented with an array source and a two-dimensional Foucault knife-edge (2DFK). A pinhole array lens was employed to manipulate the X-ray beam on the Fourier space. An emerging biaxial scanning procedure was also demonstrated with the periodic 2DFK. The differential phase images (DPIs) of the midrib in a leaf of a rose bush were visualized to verify the phase imaging of biological specimens by the proposed method. It also has features of depicting multiple-stack phase images, and rendering morphological DPIs, because it acquires pure phase information.

  20. PHASE CORRELATION METHOD FOR THE ALIGNMENT OF TOTAL SOLAR ECLIPSE IMAGES

    SciTech Connect

    Druckmueller, M.

    2009-12-01

    A modified phase correlation method, based on Fourier transform, which enables the alignment of solar coronal images taken during the total solar eclipses, is presented. The method enables the measurement of translation, rotation, and scaling factor between two images. With the application of this technique, pairs of images with different exposure times, different brightness scale, such as linear for CCD and nonlinear for images taken with photographic film, and even images from different emission lines can be aligned with sub-pixel precision.

  1. Higher-dimensional phase imaging

    NASA Astrophysics Data System (ADS)

    Huntley, Jonathan M.

    2010-04-01

    Traditional full-field interferometric techniques (speckle, moiré, holography etc) provide 2-D phase images, which encode the surface deformation state of the object under test. Over the past 15 years, the use of additional spatial or temporal dimensions has been investigated by a number of research groups. Early examples include the measurement of 3-D surface profiles by temporally-varying projected fringe patterns, and dynamic speckle interferometry. More recently (the past 5 years) a family of related techniques (Wavelength Scanning Interferometry, Phase Contrast Spectral Optical Coherence Tomography (OCT), and Tilt Scanning Interferometry) has emerged that provides the volume deformation state of the object. The techniques can be thought of as a marriage between the phase sensing capabilities of Phase Shifting Interferometry and the depth-sensing capabilities of OCT. Finally, in the past 12 months a technique called Hyperspectral Interferometry has been proposed in which absolute optical path distributions are obtained in a single shot through the spectral decomposition of a white light interferogram, and for which the additional dimension therefore corresponds to the illumination wavenumber. An overview of these developments, and the related issue of robust phase unwrapping of noisy 3-D wrapped phase volumes, is presented in this paper.

  2. GPC and quantitative phase imaging

    NASA Astrophysics Data System (ADS)

    Palima, Darwin; Bañas, Andrew Rafael; Villangca, Mark Jayson; Glückstad, Jesper

    2016-03-01

    Generalized Phase Contrast (GPC) is a light efficient method for generating speckle-free contiguous optical distributions using binary-only or analog phase levels. It has been used in applications such as optical trapping and manipulation, active microscopy, structured illumination, optical security, parallel laser marking and labelling and recently in contemporary biophotonics applications such as for adaptive and parallel two-photon optogenetics and neurophotonics. We will present our most recent GPC developments geared towards these applications. We first show a very compact static light shaper followed by the potential of GPC for biomedical and multispectral applications where we experimentally demonstrate the active light shaping of a supercontinuum laser over most of the visible wavelength range. Finally, we discuss how GPC can be advantageously applied for Quantitative Phase Imaging (QPI).

  3. Slit Function Measurement of An Imaging Spectrograph Using Fourier Transform Techniques

    NASA Technical Reports Server (NTRS)

    Park, Hongwoo; Swimyard, Bruce; Jakobsen, Peter; Moseley, Harvey; Greenhouse, Matthew

    2004-01-01

    Knowledge of a spectrograph slit function is necessary to interpret the unresolved lines in an observed spectrum. A theoretical slit function can be calculated from the sizes of the entrance slit, the detector aperture when it functions as an exit slit, the dispersion characteristic of the disperser, and the point spread function of the spectrograph. A measured slit function is preferred to the theoretical one for the correct interpretation of the spectral data. In a scanning spectrometer with a single exit slit, the slit function is easily measured. In a fixed grating/or disperser spectrograph, illuminating the entrance slit with a near monochromatic light from a pre-monochrmator or a tunable laser and varying the wavelength of the incident light can measure the slit function. Even though the latter technique had been used successfully for the slit function measurements, it had been very laborious and it would be prohibitive to an imaging spectrograph or a multi-object spectrograph that has a large field of view. We explore an alternative technique that is manageable for the measurements. In the proposed technique, the imaging spectrograph is used as a detector of a Fourier transform spectrometer. This method can be applied not only to an IR spectrograph but also has a potential to a visible/UV spectrograph including a wedge filter spectrograph. This technique will require a blackbody source of known temperature and a bolometer to characterize the interferometer part of the Fourier Transform spectrometer. This pa?er will describe the alternative slit function measurement technique using a Fourier transform spectrometer.

  4. Renal Graft Fibrosis and Inflammation Quantification by an Automated Fourier-Transform Infrared Imaging Technique.

    PubMed

    Vuiblet, Vincent; Fere, Michael; Gobinet, Cyril; Birembaut, Philippe; Piot, Olivier; Rieu, Philippe

    2016-08-01

    Renal interstitial fibrosis and interstitial active inflammation are the main histologic features of renal allograft biopsy specimens. Fibrosis is currently assessed by semiquantitative subjective analysis, and color image analysis has been developed to improve the reliability and repeatability of this evaluation. However, these techniques fail to distinguish fibrosis from constitutive collagen or active inflammation. We developed an automatic, reproducible Fourier-transform infrared (FTIR) imaging-based technique for simultaneous quantification of fibrosis and inflammation in renal allograft biopsy specimens. We generated and validated a classification model using 49 renal biopsy specimens and subsequently tested the robustness of this classification algorithm on 166 renal grafts. Finally, we explored the clinical relevance of fibrosis quantification using FTIR imaging by comparing results with renal function at 3 months after transplantation (M3) and the variation of renal function between M3 and M12. We showed excellent robustness for fibrosis and inflammation classification, with >90% of renal biopsy specimens adequately classified by FTIR imaging. Finally, fibrosis quantification by FTIR imaging correlated with renal function at M3, and the variation in fibrosis between M3 and M12 correlated well with the variation in renal function over the same period. This study shows that FTIR-based analysis of renal graft biopsy specimens is a reproducible and reliable label-free technique for quantifying fibrosis and active inflammation. This technique seems to be more relevant than digital image analysis and promising for both research studies and routine clinical practice.

  5. The Anatomy of Fourier-Based Correlation Image Velocimetry and Sources of Decorrelating Errors

    NASA Astrophysics Data System (ADS)

    Giarra, Matthew; Vlachos, Pavlos

    2015-11-01

    Particle image velocimetry (PIV) algorithms have recently been applied to photographs captured using a variety of techniques including schlieren, synchrotron x-ray, and microscope imaging. While the characteristics of these types of images differ greatly from those of particle images, virtually no analysis has been done to determine how these differences affect the performance of Fourier-based cross correlation (CC) algorithms. Here, we analyze schlieren, x-ray, and traditional PIV images to show that the signal-to-noise ratios (SNR) of their CCs vary across spectral wavenumbers, and that the assignment of a single SNR to the CC is an oversimplification that obfuscates the underlying source of the decorrelating errors. We will show that the failure of traditional algorithms to distinguish correlated from uncorrelated wavenumbers introduces secondary CC peaks that increase measurement uncertainty by decreasing the correlation peak-height ratio, and can cause the measurement to fail by overtaking the true peak. Finally, we introduce a new algorithm that mitigates these issues and increases measurement accuracy by automatically discriminating correlated wavenumbers with no a priori information about the images' contents.

  6. Renal Graft Fibrosis and Inflammation Quantification by an Automated Fourier-Transform Infrared Imaging Technique.

    PubMed

    Vuiblet, Vincent; Fere, Michael; Gobinet, Cyril; Birembaut, Philippe; Piot, Olivier; Rieu, Philippe

    2016-08-01

    Renal interstitial fibrosis and interstitial active inflammation are the main histologic features of renal allograft biopsy specimens. Fibrosis is currently assessed by semiquantitative subjective analysis, and color image analysis has been developed to improve the reliability and repeatability of this evaluation. However, these techniques fail to distinguish fibrosis from constitutive collagen or active inflammation. We developed an automatic, reproducible Fourier-transform infrared (FTIR) imaging-based technique for simultaneous quantification of fibrosis and inflammation in renal allograft biopsy specimens. We generated and validated a classification model using 49 renal biopsy specimens and subsequently tested the robustness of this classification algorithm on 166 renal grafts. Finally, we explored the clinical relevance of fibrosis quantification using FTIR imaging by comparing results with renal function at 3 months after transplantation (M3) and the variation of renal function between M3 and M12. We showed excellent robustness for fibrosis and inflammation classification, with >90% of renal biopsy specimens adequately classified by FTIR imaging. Finally, fibrosis quantification by FTIR imaging correlated with renal function at M3, and the variation in fibrosis between M3 and M12 correlated well with the variation in renal function over the same period. This study shows that FTIR-based analysis of renal graft biopsy specimens is a reproducible and reliable label-free technique for quantifying fibrosis and active inflammation. This technique seems to be more relevant than digital image analysis and promising for both research studies and routine clinical practice. PMID:26683669

  7. Optimization of magnetic flux density for fast MREIT conductivity imaging using multi-echo interleaved partial fourier acquisitions

    PubMed Central

    2013-01-01

    Background Magnetic resonance electrical impedance tomography (MREIT) has been introduced as a non-invasive method for visualizing the internal conductivity and/or current density of an electrically conductive object by externally injected currents. The injected current through a pair of surface electrodes induces a magnetic flux density distribution inside the imaging object, which results in additional magnetic flux density. To measure the magnetic flux density signal in MREIT, the phase difference approach in an interleaved encoding scheme cancels out the systematic artifacts accumulated in phase signals and also reduces the random noise effect by doubling the measured magnetic flux density signal. For practical applications of in vivo MREIT, it is essential to reduce the scan duration maintaining spatial-resolution and sufficient contrast. In this paper, we optimize the magnetic flux density by using a fast gradient multi-echo MR pulse sequence. To recover the one component of magnetic flux density Bz, we use a coupled partial Fourier acquisitions in the interleaved sense. Methods To prove the proposed algorithm, we performed numerical simulations using a two-dimensional finite-element model. For a real experiment, we designed a phantom filled with a calibrated saline solution and located a rubber balloon inside the phantom. The rubber balloon was inflated by injecting the same saline solution during the MREIT imaging. We used the multi-echo fast low angle shot (FLASH) MR pulse sequence for MRI scan, which allows the reduction of measuring time without a substantial loss in image quality. Results Under the assumption of a priori phase artifact map from a reference scan, we rigorously investigated the convergence ratio of the proposed method, which was closely related with the number of measured phase encode set and the frequency range of the background field inhomogeneity. In the phantom experiment with a partial Fourier acquisition, the total scan time was

  8. Functional imaging of hemodynamic stimulus response in the rat retina with ultrahigh-speed spectral / Fourier domain OCT

    NASA Astrophysics Data System (ADS)

    Choi, WooJhon; Baumann, Bernhard; Clermont, Allen C.; Feener, Edward P.; Boas, David A.; Fujimoto, James G.

    2013-03-01

    Measuring retinal hemodynamics in response to flicker stimulus is important for investigating pathophysiology in small animal models of diabetic retinopathy, because a reduction in the hyperemic response is thought to be one of the earliest changes in diabetic retinopathy. In this study, we investigated functional imaging of retinal hemodynamics in response to flicker stimulus in the rat retina using an ultrahigh speed spectral / Fourier domain OCT system at 840nm with an axial scan rate of 244kHz. At 244kHz the nominal axial velocity range that could be measured without phase wrapping was +/-37.7mm/s. Pulsatile total retinal arterial blood flow as a function of time was measured using an en face Doppler approach where a 200μm × 200μm area centered at the central retinal artery was repeatedly raster scanned at a volume acquisition rate of 55Hz. Three-dimensional capillary imaging was performed using speckle decorrelation which has minimal angle dependency compared to other angiography techniques based on OCT phase information. During OCT imaging, a flicker stimulus could be applied to the retina synchronously by inserting a dichroic mirror in the imaging interface. An acute transient increase in total retinal blood flow could be detected. At the capillary level, an increase in the degree of speckle decorrelation in capillary OCT angiography images could also be observed, which indicates an increase in the velocity of blood at the capillary level. This method promises to be useful for the investigation of small animal models of ocular diseases.

  9. Tensor representation of color images and fast 2D quaternion discrete Fourier transform

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.; Agaian, Sos S.

    2015-03-01

    In this paper, a general, efficient, split algorithm to compute the two-dimensional quaternion discrete Fourier transform (2-D QDFT), by using the special partitioning in the frequency domain, is introduced. The partition determines an effective transformation, or color image representation in the form of 1-D quaternion signals which allow for splitting the N × M-point 2-D QDFT into a set of 1-D QDFTs. Comparative estimates revealing the efficiency of the proposed algorithms with respect to the known ones are given. In particular, a proposed method of calculating the 2r × 2r -point 2-D QDFT uses 18N2 less multiplications than the well-known column-row method and method of calculation based on the symplectic decomposition. The proposed algorithm is simple to apply and design, which makes it very practical in color image processing in the frequency domain.

  10. Real-time Fourier transform spectrometry for fluorescence imaging and flow cytometry

    SciTech Connect

    Buican, T.N.

    1990-01-01

    We present a Fourier transform (FT) spectrometer that is suitable for real-time spectral analysis in fluorescence imaging and flow cytometry. The instrument consists of a novel type of interferometer that can be modulated at frequencies of up to 100 kHz and has a high light throughput; and a dedicated, parallel array processor for the real-time computation of spectral parameters. The data acquisition array processor can be programmed by a host computer to perform any desired linear transform on the interferogram and can thus separate contributions from multiple fluorescence microscopy. The integration of a flow cytometer and a spectral imaging fluorescence microscope is discussed, and the concepts of direct and reversed virtual sorting'' are introduced. 9 refs., 8 figs.

  11. Preliminary study on diffuse axonal injury by Fourier transform infrared spectroscopy histopathology imaging.

    PubMed

    Yang, Tiantong; He, Guanglong; Zhang, Xiang; Chang, Lin; Zhang, Haidong; Ripple, Mary G; Fowler, David R; Li, Ling

    2014-01-01

    The objective of this study was to evaluate the application of Fourier transform infrared (FTIR) spectroscopy for detecting diffuse axonal injury (DAI) in a mouse model. Brain tissues from DAI mouse model were prepared with H&E, silver, and β-amyloid precursor protein (β-APP) immunohistochemistry stains and were also studied with FTIR. The infrared spectrum images showed high absorption of amide II in the subcortical white matter of the experimental mouse brain, while there was no obvious expression of amide II in the control mouse brain. The areas with high absorption of amide II were in the same distribution as the DAI region confirmed by the silver and β-APP studies. The result suggests that high absorption of amide II correlates with axonal injury. The use of FTIR imaging allows the biochemical changes associated with DAI pathologies to be detected in the tissues, thus providing an important adjunct method to the current conventional pathological diagnostic techniques.

  12. Imaging phased telescope array study

    NASA Technical Reports Server (NTRS)

    Harvey, James E.

    1989-01-01

    The problems encountered in obtaining a wide field-of-view with large, space-based direct imaging phased telescope arrays were considered. After defining some of the critical systems issues, previous relevant work in the literature was reviewed and summarized. An extensive list was made of potential error sources and the error sources were categorized in the form of an error budget tree including optical design errors, optical fabrication errors, assembly and alignment errors, and environmental errors. After choosing a top level image quality requirment as a goal, a preliminary tops-down error budget allocation was performed; then, based upon engineering experience, detailed analysis, or data from the literature, a bottoms-up error budget reallocation was performed in an attempt to achieve an equitable distribution of difficulty in satisfying the various allocations. This exercise provided a realistic allocation for residual off-axis optical design errors in the presence of state-of-the-art optical fabrication and alignment errors. Three different computational techniques were developed for computing the image degradation of phased telescope arrays due to aberrations of the individual telescopes. Parametric studies and sensitivity analyses were then performed for a variety of subaperture configurations and telescope design parameters in an attempt to determine how the off-axis performance of a phased telescope array varies as the telescopes are scaled up in size. The Air Force Weapons Laboratory (AFWL) multipurpose telescope testbed (MMTT) configuration was analyzed in detail with regard to image degradation due to field curvature and distortion of the individual telescopes as they are scaled up in size.

  13. Quantitative analysis of biological tissues using Fourier transform-second-harmonic generation imaging

    NASA Astrophysics Data System (ADS)

    Ambekar Ramachandra Rao, Raghu; Mehta, Monal R.; Toussaint, Kimani C., Jr.

    2010-02-01

    We demonstrate the use of Fourier transform-second-harmonic generation (FT-SHG) imaging of collagen fibers as a means of performing quantitative analysis of obtained images of selected spatial regions in porcine trachea, ear, and cornea. Two quantitative markers, preferred orientation and maximum spatial frequency are proposed for differentiating structural information between various spatial regions of interest in the specimens. The ear shows consistent maximum spatial frequency and orientation as also observed in its real-space image. However, there are observable changes in the orientation and minimum feature size of fibers in the trachea indicating a more random organization. Finally, the analysis is applied to a 3D image stack of the cornea. It is shown that the standard deviation of the orientation is sensitive to the randomness in fiber orientation. Regions with variations in the maximum spatial frequency, but with relatively constant orientation, suggest that maximum spatial frequency is useful as an independent quantitative marker. We emphasize that FT-SHG is a simple, yet powerful, tool for extracting information from images that is not obvious in real space. This technique can be used as a quantitative biomarker to assess the structure of collagen fibers that may change due to damage from disease or physical injury.

  14. Real-time three-dimensional Fourier-domain optical coherence tomography video image guided microsurgeries

    NASA Astrophysics Data System (ADS)

    Kang, Jin U.; Huang, Yong; Zhang, Kang; Ibrahim, Zuhaib; Cha, Jaepyeong; Lee, W. P. Andrew; Brandacher, Gerald; Gehlbach, Peter L.

    2012-08-01

    The authors describe the development of an ultrafast three-dimensional (3D) optical coherence tomography (OCT) imaging system that provides real-time intraoperative video images of the surgical site to assist surgeons during microsurgical procedures. This system is based on a full-range complex conjugate free Fourier-domain OCT (FD-OCT). The system was built in a CPU-GPU heterogeneous computing architecture capable of video OCT image processing. The system displays at a maximum speed of 10 volume/s for an image volume size of 160×80×1024 (X×Y×Z) pixels. We have used this system to visualize and guide two prototypical microsurgical maneuvers: microvascular anastomosis of the rat femoral artery and ultramicrovascular isolation of the retinal arterioles of the bovine retina. Our preliminary experiments using 3D-OCT-guided microvascular anastomosis showed optimal visualization of the rat femoral artery (diameter<0.8 mm), instruments, and suture material. Real-time intraoperative guidance helped facilitate precise suture placement due to optimized views of the vessel wall during anastomosis. Using the bovine retina as a model system, we have performed "ultra microvascular" feasibility studies by guiding handheld surgical micro-instruments to isolate retinal arterioles (diameter˜0.1 mm). Isolation of the microvessels was confirmed by successfully passing a suture beneath the vessel in the 3D imaging environment.

  15. Real-time three-dimensional Fourier-domain optical coherence tomography video image guided microsurgeries

    PubMed Central

    Huang, Yong; Zhang, Kang; Ibrahim, Zuhaib; Cha, Jaepyeong; Lee, W. P. Andrew; Brandacher, Gerald; Gehlbach, Peter L.

    2012-01-01

    Abstract. The authors describe the development of an ultrafast three-dimensional (3D) optical coherence tomography (OCT) imaging system that provides real-time intraoperative video images of the surgical site to assist surgeons during microsurgical procedures. This system is based on a full-range complex conjugate free Fourier-domain OCT (FD-OCT). The system was built in a CPU-GPU heterogeneous computing architecture capable of video OCT image processing. The system displays at a maximum speed of 10  volume/s for an image volume size of 160×80×1024 (X×Y×Z) pixels. We have used this system to visualize and guide two prototypical microsurgical maneuvers: microvascular anastomosis of the rat femoral artery and ultramicrovascular isolation of the retinal arterioles of the bovine retina. Our preliminary experiments using 3D-OCT-guided microvascular anastomosis showed optimal visualization of the rat femoral artery (diameter<0.8  mm), instruments, and suture material. Real-time intraoperative guidance helped facilitate precise suture placement due to optimized views of the vessel wall during anastomosis. Using the bovine retina as a model system, we have performed “ultra microvascular” feasibility studies by guiding handheld surgical micro-instruments to isolate retinal arterioles (diameter∼0.1  mm). Isolation of the microvessels was confirmed by successfully passing a suture beneath the vessel in the 3D imaging environment. PMID:23224164

  16. Phase contrast radiography: Image modeling and optimization

    NASA Astrophysics Data System (ADS)

    Arhatari, Benedicta D.; Mancuso, Adrian P.; Peele, Andrew G.; Nugent, Keith A.

    2004-12-01

    We consider image formation for the phase-contrast radiography technique where the radiation source is extended and spatially incoherent. A model is developed for this imaging process which allows us to define an objective filtering criterion that can be applied to the recovery of quantitative phase images from data obtained at different propagation distances. We test our image model with experimental x-ray data. We then apply our filter to experimental neutron phase radiography data and demonstrate improved image quality.

  17. Hybrid-dual-fourier tomographic algorithm for a fast three-dimensionial optical image reconstruction in turbid media

    NASA Technical Reports Server (NTRS)

    Alfano, Robert R. (Inventor); Cai, Wei (Inventor)

    2007-01-01

    A reconstruction technique for reducing computation burden in the 3D image processes, wherein the reconstruction procedure comprises an inverse and a forward model. The inverse model uses a hybrid dual Fourier algorithm that combines a 2D Fourier inversion with a 1D matrix inversion to thereby provide high-speed inverse computations. The inverse algorithm uses a hybrid transfer to provide fast Fourier inversion for data of multiple sources and multiple detectors. The forward model is based on an analytical cumulant solution of a radiative transfer equation. The accurate analytical form of the solution to the radiative transfer equation provides an efficient formalism for fast computation of the forward model.

  18. Fourier transform infrared imaging analysis in discrimination studies of squamous cell carcinoma.

    PubMed

    Pallua, J D; Pezzei, C; Zelger, B; Schaefer, G; Bittner, L K; Huck-Pezzei, V A; Schoenbichler, S A; Hahn, H; Kloss-Brandstaetter, A; Kloss, F; Bonn, G K; Huck, C W

    2012-09-01

    Oral squamous cell carcinoma (OSCC) of the oral cavity and oropharynx represents more than 95% of all malignant neoplasms in the oral cavity. Histomorphological evaluation of this cancer type is invasive and remains a time consuming and subjective technique. Therefore, novel approaches for histological recognition are necessary to identify malignancy at an early stage. Fourier transform infrared (FTIR) imaging has become an essential tool for the detection and characterization of the molecular components of biological processes, such as those responsible for the dynamic properties of tumor progression. FTIR imaging is a modern analytical technique enabling molecular imaging of a complex biological sample and is based on the absorption of IR radiation by vibrational transitions in covalent bonds. One major advantage of this technique is the acquisition of local molecular expression profiles, while maintaining the topographic integrity of the tissue and avoiding time-consuming extraction, purification, and separation steps. With this imaging technique, it is possible to obtain unique images of the spatial distribution of proteins, lipids, carbohydrates, cholesterols, nucleic acids, phospholipids, and small molecules with high spatial resolution. Analysis and visualization of FTIR imaging datasets are challenging and the use of chemometric tools is crucial in order to take advantage of the full measurement. Therefore, methodologies for this task based on the novel developed algorithm for multivariate image analysis (MIA) are often necessary. In the present study, FTIR imaging and data analysis methods were combined to optimize the tissue measurement mode after deparaffinization and subsequent data evaluation (univariate analysis and MIAs). We demonstrate that it is possible to collect excellent IR spectra from formalin-fixed paraffin-embedded (FFPE) tissue microarrays (TMAs) of OSCC tissue sections employing an optimised analytical protocol. The correlation of FTIR

  19. MEMS-Based Handheld Fourier Domain Doppler Optical Coherence Tomography for Intraoperative Microvascular Anastomosis Imaging

    PubMed Central

    Huang, Yong; Furtmüller, Georg J.; Tong, Dedi; Zhu, Shan; Lee, W. P. Andrew; Brandacher, Gerald; Kang, Jin U.

    2014-01-01

    Purpose To demonstrate the feasibility of a miniature handheld optical coherence tomography (OCT) imager for real time intraoperative vascular patency evaluation in the setting of super-microsurgical vessel anastomosis. Methods A novel handheld imager Fourier domain Doppler optical coherence tomography based on a 1.3-µm central wavelength swept source for extravascular imaging was developed. The imager was minimized through the adoption of a 2.4-mm diameter microelectromechanical systems (MEMS) scanning mirror, additionally a 12.7-mm diameter lens system was designed and combined with the MEMS mirror to achieve a small form factor that optimize functionality as a handheld extravascular OCT imager. To evaluate in-vivo applicability, super-microsurgical vessel anastomosis was performed in a mouse femoral vessel cut and repair model employing conventional interrupted suture technique as well as a novel non-suture cuff technique. Vascular anastomosis patency after clinically successful repair was evaluated using the novel handheld OCT imager. Results With an adjustable lateral image field of view up to 1.5 mm by 1.5 mm, high-resolution simultaneous structural and flow imaging of the blood vessels were successfully acquired for BALB/C mouse after orthotopic hind limb transplantation using a non-suture cuff technique and BALB/C mouse after femoral artery anastomosis using a suture technique. We experimentally quantify the axial and lateral resolution of the OCT to be 12.6 µm in air and 17.5 µm respectively. The OCT has a sensitivity of 84 dB and sensitivity roll-off of 5.7 dB/mm over an imaging range of 5 mm. Imaging with a frame rate of 36 Hz for an image size of 1000(lateral)×512(axial) pixels using a 50,000 A-lines per second swept source was achieved. Quantitative vessel lumen patency, lumen narrowing and thrombosis analysis were performed based on acquired structure and Doppler images. Conclusions A miniature handheld OCT imager that can be used for

  20. Macromolecular concentrations in bovine nasal cartilage by Fourier transform infrared imaging and principal component regression.

    PubMed

    Yin, Jianhua; Xia, Yang

    2010-11-01

    Fourier transform infrared imaging (FT-IRI) and principal component regression (PCR) were used to quantitatively determine collagen and proteoglycan concentrations in bovine nasal cartilage (BNC). An infrared spectral library was first established by obtaining eleven infrared spectra from a series of collagen and chondroitin 6-sulfate mixed in different ratios. FT-IR images were obtained from 6-μm-thick sections of BNC specimens at 6.25-μm pixel size. The spectra from the FT-IR images were imported into a PCR program to obtain the relative concentrations of collagen and proteoglycan in BNC, based on the spectral library of pure chemicals. These PCR-determined concentrations agreed with the molecular concentrations determined biochemically using an enzyme digestion assay. Use of the imaging approach revealed that proteoglycan loss in the specimens occurs first at the surface of the tissue block when compared with the middle portion of the tissue block. The quantitative correlation of collagen and proteoglycan revealed that their infrared absorption peak areas at 1338 and 1072-855 cm(-1) can only be used as qualitative indicators of the molecular contents. The use of PCR with FT-IRI offers an accurate tool to spatially determine the distributions of macromolecular concentration in cartilage.

  1. Image reconstruction from partial pseudo polar Fourier sampling based on alternating direction total variation minimization

    NASA Astrophysics Data System (ADS)

    Liu, Qiu-hong; Shu, Fan; Zhang, Wen-kun; Cai, Ai-long; Li, Lei; Yan, Bin

    2013-08-01

    Linear scan Computed Tomography (LCT) has emerged as a promising technique in fields like industrial scanning and security inspection due to its straight-line source trajectory and high scanning speed. However, in practical applications of LCT, the ordinary algorithms suffer from serious artifacts owing to the limited-angle and insufficient data. In this paper, a new method which reconstructs image from partial Fourier data sampled in pseudo polar grid based on alternating direction anisometric total variation minimization has been proposed. The main idea is to reform the image reconstruction problem into solving an under-determined linear equation, and then reconstruct image by applying the popular total variation (TV) minimization to reform an unconstraint optimization by means of augmented Lagrange method and using the alternating minimization method of multiplier (ADMM) which contributes to the fast convergence. The proposed method is practical in the large-scale task of reconstruction due to its algorithmic simplicity and computational efficiency and reconstructs better images. The results of the numerical simulations and pseudo real data reconstructions from the linear scan validate that the proposed method is both efficient and accurate.

  2. Translational Diffusion of Fluorescent Proteins by Molecular Fourier Imaging Correlation Spectroscopy

    PubMed Central

    Fink, Michael C.; Adair, Kenneth V.; Guenza, Marina G.; Marcus, Andrew H.

    2006-01-01

    The ability to noninvasively observe translational diffusion of proteins and protein complexes is important to many biophysical problems. We report high signal/noise (≥250) measurements of the translational diffusion in viscous solution of the fluorescent protein, DsRed. This is carried out using a new technique: molecular Fourier imaging correlation spectroscopy (M-FICS). M-FICS is an interferometric method that detects a collective Fourier component of the fluctuating density of a small population of fluorescent molecules, and provides information about the distribution of molecular diffusivities. A theoretical analysis is presented that expresses the detected signal fluctuations in terms of the relevant time-correlation functions for molecular translational diffusion. Furthermore, the role played by optical orientational degrees of freedom is established. We report Fickian self-diffusion of the DsRed tetramer at short timescales. The long-time deviation of our data from Fickian behavior is used to determine the variance of the distribution of the protein self-diffusion coefficient. We compare our results to the expected outcomes for 1), a bi-disperse distribution of protein species, and 2), dynamic disorder of the host solvent. PMID:16920833

  3. Deep-subwavelength Nanometric Image Reconstruction using Fourier Domain Optical Normalization

    PubMed Central

    Qin, Jing; Silver, Richard M.; Barnes, Bryan M.; Zhou, Hui; Dixson, Ronald G.; Henn, Mark-Alexander

    2016-01-01

    Quantitative optical measurements of deep sub-wavelength, three-dimensional, nanometric structures with sensitivity to sub-nanometer details address an ubiquitous measurement challenge. A Fourier domain normalization approach is used in the Fourier optical imaging code to simulate the full three-dimensional scattered light field of nominally 15 nm sized structures, accurately replicating the light field as a function of the focus position. Using the full three-dimensional light field, nanometer scale details such as a 2 nm thin conformal oxide and nanometer topography are rigorously fitted for features less than 1/30th of the wavelength in size. The densely packed structures are positioned nearly an order of magnitude closer than the conventional Rayleigh resolution limit and can be measured with sub-nanometer parametric uncertainties. This approach enables a practical measurement sensitivity to size variations of only a few atoms in size using a high throughput optical configuration with broad application in measuring nanometric structures and nanoelectronic devices. PMID:26925297

  4. Measurement of the mid-infrared Fourier spectroscopic imaging of whole human face by portable apparatus (size: 50*50 mm, weight: 200 g)

    NASA Astrophysics Data System (ADS)

    Qi, Wei; Suzuki, Yo; Fujiwara, Masaru; Saito, Tsubasa; Suzuki, Satoru; Abeygunawardhana, Pradeep K.; Wada, Kenji; Nishiyama, Akira; Ishimaru, Ichiro

    2014-11-01

    In the daily living space, measurement of the biological-substance distributions such as sebum can be realized by the proposed method of imaging-type 2-dimensional Fourier spectroscopy. This method has the strong robustness for mechanical vibrations. So, the spectrometer (size: 50*50mm, weight: 200g) can be produced without anti-vibration mechanism. Moreover, the phase shifter is a core part of the spectrometer, and it is constructed by the low-price bimorph type actuator which is depending on the vibration control of the piezoceramic in proposed method. It is appropriate as the actuator of the phase shifter from the evaluation results of the actuator straightness and position accuracy in the midinfrared region. As we know, the Fourier spectroscopy has a high light utilization efficiency. Therefore, the low price microbolometer can be used as the imaging sensor. So, the low-price (10,000 U.S. dollars), compact and high portability spectrometer can be produced. Furthermore, the much higher position accuracy in the short wavelength region is requested as we know, the phase shift correction method has been proposed. In this paper, high performance evaluations of the portable spectroscopy apparatus have been discussed by using the CO2 laser spectroscopy results in the midinfrared region. Then, the phase shift correction method was explained. At the end, we demonstrated the feasibility of the mid-infrared imaging of whole human faces without active illuminations.

  5. Automatic phase correction of fourier transform NMR spectra based on the dispersion versus absorption (DISPA) lineshape analysis

    NASA Astrophysics Data System (ADS)

    Sotak, Christopher H.; Dumoulin, Charles L.; Newsham, Mark D.

    A method for automatic phase correction of Fourier transform NMR spectra bused on the dispersion versus absorption (DISPA) lineshape analysis is described. The DISPA display of a single misphased Lorentzian line gives a unit circle which has been rotated about the origin (relative to its "reference circle") by a number of degrees equal to the phase misadjustment. This rotation, Φ, is a combination of the zero- and first-order phase angles at the frequency of the resonance. Calculation of Φ for two or more resonances allows the spectral phasing parameters to be determined and applied to correct the spectrum. This approach has been implemented in both automatic and "semi-automatic" modes.

  6. A Fourier-based compressed sensing technique for accelerated CT image reconstruction using first-order methods

    NASA Astrophysics Data System (ADS)

    Choi, Kihwan; Li, Ruijiang; Nam, Haewon; Xing, Lei

    2014-06-01

    As a solution to iterative CT image reconstruction, first-order methods are prominent for the large-scale capability and the fast convergence rate {O}(1/k^2). In practice, the CT system matrix with a large condition number may lead to slow convergence speed despite the theoretically promising upper bound. The aim of this study is to develop a Fourier-based scaling technique to enhance the convergence speed of first-order methods applied to CT image reconstruction. Instead of working in the projection domain, we transform the projection data and construct a data fidelity model in Fourier space. Inspired by the filtered backprojection formalism, the data are appropriately weighted in Fourier space. We formulate an optimization problem based on weighted least-squares in the Fourier space and total-variation (TV) regularization in image space for parallel-beam, fan-beam and cone-beam CT geometry. To achieve the maximum computational speed, the optimization problem is solved using a fast iterative shrinkage-thresholding algorithm with backtracking line search and GPU implementation of projection/backprojection. The performance of the proposed algorithm is demonstrated through a series of digital simulation and experimental phantom studies. The results are compared with the existing TV regularized techniques based on statistics-based weighted least-squares as well as basic algebraic reconstruction technique. The proposed Fourier-based compressed sensing (CS) method significantly improves both the image quality and the convergence rate compared to the existing CS techniques.

  7. Singular Spectrum Analysis: A Note on Data Processing for Fourier Transform Hyperspectral Imagers.

    PubMed

    Rafert, J Bruce; Zabalza, Jaime; Marshall, Stephen; Ren, Jinchang

    2016-09-01

    Hyperspectral remote sensing is experiencing a dazzling proliferation of new sensors, platforms, systems, and applications with the introduction of novel, low-cost, low-weight sensors. Curiously, relatively little development is now occurring in the use of Fourier transform (FT) systems, which have the potential to operate at extremely high throughput without use of a slit or reductions in both spatial and spectral resolution that thin film based mosaic sensors introduce. This study introduces a new physics-based analytical framework called singular spectrum analysis (SSA) to process raw hyperspectral imagery collected with FT imagers that addresses some of the data processing issues associated with the use of the inverse FT. Synthetic interferogram data are analyzed using SSA, which adaptively decomposes the original synthetic interferogram into several independent components associated with the signal, photon and system noise, and the field illumination pattern.

  8. Imaging open-path Fourier transform infrared spectrometer for 3D cloud profiling

    NASA Astrophysics Data System (ADS)

    Rentz Dupuis, Julia; Mansur, David J.; Engel, James R.; Vaillancourt, Robert; Todd, Lori; Mottus, Kathleen

    2008-04-01

    OPTRA and University of North Carolina are developing an imaging open-path Fourier transform infrared (I-OP-FTIR) spectrometer for 3D profiling of chemical and biological agent simulant plumes released into test ranges and chambers. An array of I-OP-FTIR instruments positioned around the perimeter of the test site, in concert with advanced spectroscopic algorithms, enables real time tomographic reconstruction of the plume. The approach will be considered as a candidate referee measurement for test ranges and chambers. This Small Business Technology Transfer (STTR) effort combines the instrumentation and spectroscopic capabilities of OPTRA, Inc. with the computed tomographic expertise of the University of North Carolina, Chapel Hill. In this paper, we summarize progress to date and overall system performance projections based on the instrument, spectroscopy, and tomographic reconstruction accuracy. We then present a preliminary optical design of the I-OP-FTIR.

  9. Imaging open-path Fourier transform infrared spectrometer for 3D cloud profiling

    NASA Astrophysics Data System (ADS)

    Rentz Dupuis, Julia; Mansur, David J.; Vaillancourt, Robert; Carlson, David; Evans, Thomas; Schundler, Elizabeth; Todd, Lori; Mottus, Kathleen

    2010-04-01

    OPTRA has developed an imaging open-path Fourier transform infrared (I-OP-FTIR) spectrometer for 3D profiling of chemical and biological agent simulant plumes released into test ranges and chambers. An array of I-OP-FTIR instruments positioned around the perimeter of the test site, in concert with advanced spectroscopic algorithms, enables real time tomographic reconstruction of the plume. The approach is intended as a referee measurement for test ranges and chambers. This Small Business Technology Transfer (STTR) effort combines the instrumentation and spectroscopic capabilities of OPTRA, Inc. with the computed tomographic expertise of the University of North Carolina, Chapel Hill. In this paper, we summarize the design and build and detail system characterization and test of a prototype I-OP-FTIR instrument. System characterization includes radiometric performance and spectral resolution. Results from a series of tomographic reconstructions of sulfur hexafluoride plumes in a laboratory setting are also presented.

  10. New scientific results with SpIOMM: a testbed for CFHT's imaging Fourier transform spectrometer SITELLE

    NASA Astrophysics Data System (ADS)

    Drissen, L.; Alarie, A.; Martin, T.; Lagrois, D.; Rousseau-Nepton, L.; Bilodeau, A.; Robert, C.; Joncas, G.; Iglesias-Páramo, J.

    2012-09-01

    We present new data obtained with SpIOMM, the imaging Fourier transform spectrometer attached to the 1.6-m telescope of the Observatoire du Mont-Megantic in Québec. Recent technical and data reduction improvements have significantly increased SpIOMM's capabilities to observe fainter objects or weaker nebular lines, as well as continuum sources and absorption lines, and to increase its modulation efficiency in the near ultraviolet. To illustrate these improvements, we present data on the supernova remnant Cas A, planetary nebulae M27 and M97, the Wolf-Rayet ring nebula M1-67, spiral galaxies M63 and NGC 3344, as well as the interacting pair of galaxies Arp 84.

  11. The use of the fractional Fourier transform with coded excitation in ultrasound imaging.

    PubMed

    Bennett, Michael J; McLaughlin, Steve; Anderson, Tom; McDicken, Norman

    2006-04-01

    Medical ultrasound systems are limited by a tradeoff between axial resolution and the maximum imaging depth which may be achieved. The technique of coded excitation has been used extensively in the field of RADAR and SONAR for some time, but has only relatively recently been exploited in the area of medical ultrasound. This technique is attractive because allows the relationship between the pulse length and the maximum achievable spatial resolution to be changed. The work presented here explores the possibility of using the fractional Fourier transform as an effective means for the processing of signals received after the transmission of linear frequency modulated chirps. Results are presented which demonstrate that this technique is able to offer spatial resolutions similar to those obtained with a single cycle duration signal.

  12. Fourier transform infrared spectroscopic imaging parameters describing acid phosphate substitution in biologic hydroxyapatite.

    PubMed

    Spevak, Lyudmila; Flach, Carol R; Hunter, Tracey; Mendelsohn, Richard; Boskey, Adele

    2013-05-01

    Acid phosphate substitution into mineralized tissues is an important determinant of their mechanical properties and their response to treatment. This study identifies and validates Fourier transform infrared spectroscopic imaging (FTIRI) spectral parameters that provide information on the acid phosphate (HPO4) substitution into hydroxyapatite in developing mineralized tissues. Curve fitting and Fourier self-deconvolution were used to identify subband positions in model compounds (with and without HPO4). The intensity of subbands at 1127 and 1110 cm(-1) correlated with the acid phosphate content in these models. Peak height ratios of these subbands to the ν3 vibration at 1096 cm(-1) found in stoichiometric apatite were evaluated in the model compounds and mixtures thereof. FTIRI spectra of bones and teeth at different developmental ages were analyzed using these spectral parameters. Factor analysis (a chemometric technique) was also conducted on the tissue samples and resulted in factor loadings with spectral features corresponding to the HPO4 vibrations described above. Images of both factor correlation coefficients and the peak height ratios 1127/1096 and 1112/1096 cm(-1) demonstrated higher acid phosphate content in younger vs. more mature regions in the same specimen. Maps of the distribution of acid phosphate content will be useful for characterizing the extent of new bone formation, the areas of potential decreased strength, and the effects of therapies such as those used in metabolic bone diseases (osteoporosis, chronic kidney disease) on mineral composition. Because of the wider range of values obtained with the 1127/1096 cm(-1) parameter compared to the 1110/1096 cm(-1) parameter and the smaller scatter in the slope, it is suggested that this ratio should be the parameter of choice.

  13. Proposal of AAA-battery-size one-shot ATR Fourier spectroscopic imager for on-site analysis: Simultaneous measurement of multi-components with high accuracy

    NASA Astrophysics Data System (ADS)

    Hosono, Satsuki; Qi, Wei; Sato, Shun; Suzuki, Yo; Fujiwara, Masaru; Hiramatsu, Hiroyuki; Suzuki, Satoru; Abeygunawardhana, P. K. W.; Wada, Kenji; Nishiyama, Akira; Ishimaru, Ichiro

    2015-03-01

    For simultaneous measurement of multi-components on-site like factories, the ultra-compact (diameter: 9[mm], length: 45[mm], weight: 200[g]) one-shot ATR (Attenuated Total Reflection) Fourier spectroscopic imager was proposed. Because the proposed one-shot Fourier spectroscopic imaging is based on spatial-phase-shift interferometer, interferograms could be obtained with simple optical configurations. We introduced the transmission-type relativeinclined phase-shifter, that was constructed with a cuboid prism and a wedge prism, onto the optical Fourier transform plane of infinity corrected optical systems. And also, small light-sources and cameras in the mid-infrared light region, whose size are several millimeter on a side, are essential components for the ultra-compact spectroscopic configuration. We selected the Graphite light source (light source area: 1.7×1.7[mm], maker: Hawkeye technologies) whose radiation factor was high. Fortunately, in these days we could apply the cost-effective 2-dimensional light receiving device for smartphone (e.g. product name: LEPTON, maker: FLIR, price: around 400USD). In the case of alcoholic drinks factory, conventionally workers measure glucose and ethanol concentrations by bringing liquid solution back to laboratories every day. The high portable spectroscopy will make it possible to measure multi-components simultaneously on manufacturing scene. But we found experimentally that absorption spectrum of glucose and water and ethanol were overlapped each other in near infrared light region. But for mid-infrared light region, we could distinguish specific absorption peaks of glucose (@10.5[μm]) and ethanol (@11.5[μm]) independently from water absorption. We obtained standard curve between absorption (@9.6[μm]) and ethanol concentration with high correlation coefficient 0.98 successfully by ATR imaging-type 2-dimensional Fourier spectroscopy (wavelength resolution: 0.057[μm]) with the graphite light source (maker: Hawkeye

  14. Data processing pipeline for a time-sampled imaging Fourier transform spectrometer

    NASA Astrophysics Data System (ADS)

    Naylor, David A.; Fulton, Trevor R.; Davis, Peter W.; Chapman, Ian M.; Gom, Brad G.; Spencer, Locke D.; Lindner, John V.; Nelson-Fitzpatrick, Nathan E.; Tahic, Margaret K.; Davis, Gary R.

    2004-10-01

    Imaging Fourier transform spectrometers (IFTS) are becoming the preferred systems for remote sensing spectral imaging applications because of their ability to provide, simultaneously, both high spatial and spectral resolution images of a scene. IFTS can be operated in either step-and-integrate or rapid-scan modes, where it is common practice to sample interferograms at equal optical path difference intervals. The step-and-integrate mode requires a translation stage with fast and precise point-to-point motion and additional external trigger circuitry for the detector focal plane array (FPA), and produces uniformly position-sampled interferograms which can be analyzed using standard FFT routines. In the rapid-scan mode, the translation stage is continuously moving and interferograms are often acquired at the frame-rate of the FPA. Since all translation stages have associated velocity errors, the resulting interferograms are sampled at non-uniform intervals of optical path difference, which requires more sophisticated analysis. This paper discusses the processing pipeline which is being developed for the analysis of the non-uniform rapid-scan data produced by the Herschel/SPIRE IFTS.

  15. Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

    SciTech Connect

    Lupoi, Jason S.; Smith-Moritz, Andreia; Singh, Seema; McQualter, Richard; Scheller, Henrik V.; Simmons, Blake A.; Henry, Robert J.

    2015-07-10

    Background: Slow-degrading, fossil fuel-derived plastics can have deleterious effects on the environment, especially marine ecosystems. The production of bio-based, biodegradable plastics from or in plants can assist in supplanting those manufactured using fossil fuels. Polyhydroxybutyrate (PHB) is one such biodegradable polyester that has been evaluated as a possible candidate for relinquishing the use of environmentally harmful plastics. Results: PHB, possessing similar properties to polyesters produced from non-renewable sources, has been previously engineered in sugarcane, thereby creating a high-value co-product in addition to the high biomass yield. This manuscript illustrates the coupling of a Fourier-transform infrared microspectrometer, equipped with a focal plane array (FPA) detector, with multivariate imaging to successfully identify and localize PHB aggregates. Principal component analysis imaging facilitated the mining of the abundant quantity of spectral data acquired using the FPA for distinct PHB vibrational modes. PHB was measured in the chloroplasts of mesophyll and bundle sheath cells, acquiescent with previously evaluated plant samples. Conclusion: This study demonstrates the power of IR microspectroscopy to rapidly image plant sections to provide a snapshot of the chemical composition of the cell. While PHB was localized in sugarcane, this method is readily transferable to other value-added co-products in different plants.

  16. Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

    DOE PAGES

    Lupoi, Jason S.; Smith-Moritz, Andreia; Singh, Seema; McQualter, Richard; Scheller, Henrik V.; Simmons, Blake A.; Henry, Robert J.

    2015-07-10

    Background: Slow-degrading, fossil fuel-derived plastics can have deleterious effects on the environment, especially marine ecosystems. The production of bio-based, biodegradable plastics from or in plants can assist in supplanting those manufactured using fossil fuels. Polyhydroxybutyrate (PHB) is one such biodegradable polyester that has been evaluated as a possible candidate for relinquishing the use of environmentally harmful plastics. Results: PHB, possessing similar properties to polyesters produced from non-renewable sources, has been previously engineered in sugarcane, thereby creating a high-value co-product in addition to the high biomass yield. This manuscript illustrates the coupling of a Fourier-transform infrared microspectrometer, equipped with a focalmore » plane array (FPA) detector, with multivariate imaging to successfully identify and localize PHB aggregates. Principal component analysis imaging facilitated the mining of the abundant quantity of spectral data acquired using the FPA for distinct PHB vibrational modes. PHB was measured in the chloroplasts of mesophyll and bundle sheath cells, acquiescent with previously evaluated plant samples. Conclusion: This study demonstrates the power of IR microspectroscopy to rapidly image plant sections to provide a snapshot of the chemical composition of the cell. While PHB was localized in sugarcane, this method is readily transferable to other value-added co-products in different plants.« less

  17. Discrimination of healthy and osteoarthritic articular cartilage by Fourier transform infrared imaging and Fisher's discriminant analysis.

    PubMed

    Mao, Zhi-Hua; Yin, Jian-Hua; Zhang, Xue-Xi; Wang, Xiao; Xia, Yang

    2016-02-01

    Fourier transform infrared spectroscopic imaging (FTIRI) technique can be used to obtain the quantitative information of content and spatial distribution of principal components in cartilage by combining with chemometrics methods. In this study, FTIRI combining with principal component analysis (PCA) and Fisher's discriminant analysis (FDA) was applied to identify the healthy and osteoarthritic (OA) articular cartilage samples. Ten 10-μm thick sections of canine cartilages were imaged at 6.25μm/pixel in FTIRI. The infrared spectra extracted from the FTIR images were imported into SPSS software for PCA and FDA. Based on the PCA result of 2 principal components, the healthy and OA cartilage samples were effectively discriminated by the FDA with high accuracy of 94% for the initial samples (training set) and cross validation, as well as 86.67% for the prediction group. The study showed that cartilage degeneration became gradually weak with the increase of the depth. FTIRI combined with chemometrics may become an effective method for distinguishing healthy and OA cartilages in future. PMID:26977354

  18. Fast Imaging Detector Readout Circuits with In-Pixel ADCs for Fourier Transform Imaging Spectrometers

    NASA Technical Reports Server (NTRS)

    Rider, D.; Blavier, J-F.; Cunningham, T.; Hancock, B.; Key, R.; Pannell, Z.; Sander, S.; Seshadri, S.; Sun, C.; Wrigley, C.

    2011-01-01

    Focal plane arrays (FPAs) with high frame rates and many pixels benefit several upcoming Earth science missions including GEO-CAPE, GACM, and ACE by enabling broader spatial coverage and higher spectral resolution. FPAs for the PanFTS, a high spatial resolution Fourier transform spectrometer and a candidate instrument for the GEO-CAPE mission are the focus of the developments reported here, but this FPA technology has the potential to enable a variety of future measurements and instruments. The ESTO ACT Program funded the developed of a fast readout integrated circuit (ROIC) based on an innovative in-pixel analog-to-digital converter (ADC). The 128 X 128 pixel ROIC features 60 ?m pixels, a 14-bit ADC in each pixel and operates at a continuous frame rate of 14 kHz consuming only 1.1 W of power. The ROIC outputs digitized data completely eliminating the bulky, power consuming signal chains needed by conventional FPAs. The 128 X 128 pixel ROIC has been fabricated in CMOS and tested at the Jet Propulsion Laboratory. The current version is designed to be hybridized with PIN photodiode arrays via indium bump bonding for light detection in the visible and ultraviolet spectral regions. However, the ROIC design incorporates a small photodiode in each cell to permit detailed characterization of the ROICperformance without the need for hybridization. We will describe the essential features of the ROIC design and present results of ROIC performance measurements.

  19. Phase calibration target for quantitative phase imaging with ptychography.

    PubMed

    Godden, T M; Muñiz-Piniella, A; Claverley, J D; Yacoot, A; Humphry, M J

    2016-04-01

    Quantitative phase imaging (QPI) utilizes refractive index and thickness variations that lead to optical phase shifts. This gives contrast to images of transparent objects. In quantitative biology, phase images are used to accurately segment cells and calculate properties such as dry mass, volume and proliferation rate. The fidelity of the measured phase shifts is of critical importance in this field. However to date, there has been no standardized method for characterizing the performance of phase imaging systems. Consequently, there is an increasing need for protocols to test the performance of phase imaging systems using well-defined phase calibration and resolution targets. In this work, we present a candidate for a standardized phase resolution target, and measurement protocol for the determination of the transfer of spatial frequencies, and sensitivity of a phase imaging system. The target has been carefully designed to contain well-defined depth variations over a broadband range of spatial frequencies. In order to demonstrate the utility of the target, we measure quantitative phase images on a ptychographic microscope, and compare the measured optical phase shifts with Atomic Force Microscopy (AFM) topography maps and surface profile measurements from coherence scanning interferometry. The results show that ptychography has fully quantitative nanometer sensitivity in optical path differences over a broadband range of spatial frequencies for feature sizes ranging from micrometers to hundreds of micrometers. PMID:27137054

  20. Optimal reconstruction of images from localized phase.

    PubMed

    Urieli, S; Porat, M; Cohen, N

    1998-01-01

    The importance of localized phase in signal representation is investigated. The convergence rate of the POCS algorithm (projection onto convex sets) used for image reconstruction from spectral phase is defined and analyzed, and the characteristics of images optimally reconstructed from phase-only information are presented. It is concluded that images of geometric form are most efficiently reconstructed from their spectral phase, whereas images of symmetric form have the poorest convergence characteristics. The transition between the two extremes is shown to be continuous. The results provide a new approach and analysis of the previously reported advantages of the localized phase representation over the global approach, and suggest possible compression schemes.

  1. Correction for Eddy Current-Induced Echo-Shifting Effect in Partial-Fourier Diffusion Tensor Imaging.

    PubMed

    Truong, Trong-Kha; Song, Allen W; Chen, Nan-Kuei

    2015-01-01

    In most diffusion tensor imaging (DTI) studies, images are acquired with either a partial-Fourier or a parallel partial-Fourier echo-planar imaging (EPI) sequence, in order to shorten the echo time and increase the signal-to-noise ratio (SNR). However, eddy currents induced by the diffusion-sensitizing gradients can often lead to a shift of the echo in k-space, resulting in three distinct types of artifacts in partial-Fourier DTI. Here, we present an improved DTI acquisition and reconstruction scheme, capable of generating high-quality and high-SNR DTI data without eddy current-induced artifacts. This new scheme consists of three components, respectively, addressing the three distinct types of artifacts. First, a k-space energy-anchored DTI sequence is designed to recover eddy current-induced signal loss (i.e., Type 1 artifact). Second, a multischeme partial-Fourier reconstruction is used to eliminate artificial signal elevation (i.e., Type 2 artifact) associated with the conventional partial-Fourier reconstruction. Third, a signal intensity correction is applied to remove artificial signal modulations due to eddy current-induced erroneous T2(∗) -weighting (i.e., Type 3 artifact). These systematic improvements will greatly increase the consistency and accuracy of DTI measurements, expanding the utility of DTI in translational applications where quantitative robustness is much needed.

  2. Correction for Eddy Current-Induced Echo-Shifting Effect in Partial-Fourier Diffusion Tensor Imaging.

    PubMed

    Truong, Trong-Kha; Song, Allen W; Chen, Nan-Kuei

    2015-01-01

    In most diffusion tensor imaging (DTI) studies, images are acquired with either a partial-Fourier or a parallel partial-Fourier echo-planar imaging (EPI) sequence, in order to shorten the echo time and increase the signal-to-noise ratio (SNR). However, eddy currents induced by the diffusion-sensitizing gradients can often lead to a shift of the echo in k-space, resulting in three distinct types of artifacts in partial-Fourier DTI. Here, we present an improved DTI acquisition and reconstruction scheme, capable of generating high-quality and high-SNR DTI data without eddy current-induced artifacts. This new scheme consists of three components, respectively, addressing the three distinct types of artifacts. First, a k-space energy-anchored DTI sequence is designed to recover eddy current-induced signal loss (i.e., Type 1 artifact). Second, a multischeme partial-Fourier reconstruction is used to eliminate artificial signal elevation (i.e., Type 2 artifact) associated with the conventional partial-Fourier reconstruction. Third, a signal intensity correction is applied to remove artificial signal modulations due to eddy current-induced erroneous T2(∗) -weighting (i.e., Type 3 artifact). These systematic improvements will greatly increase the consistency and accuracy of DTI measurements, expanding the utility of DTI in translational applications where quantitative robustness is much needed. PMID:26413505

  3. Null test fourier domain alignment technique for phase-shifting point diffraction interferometer

    DOEpatents

    Naulleau, Patrick; Goldberg, Kenneth Alan

    2000-01-01

    Alignment technique for calibrating a phase-shifting point diffraction interferometer involves three independent steps where the first two steps independently align the image points and pinholes in rotation and separation to a fixed reference coordinate system, e.g, CCD. Once the two sub-elements have been properly aligned to the reference in two parameters (separation and orientation), the third step is to align the two sub-element coordinate systems to each other in the two remaining parameters (x,y) using standard methods of locating the pinholes relative to some easy to find reference point.

  4. Mathematical Investigation of Gamma Ray and Neutron Absorption Grid Patterns for Homeland Defense Related Fourier Imaging Systems

    NASA Technical Reports Server (NTRS)

    Boccio, Dona

    2003-01-01

    Terrorist suitcase nuclear devices typically using converted Soviet tactical nuclear warheads contain several kilograms of plutonium. This quantity of plutonium emits a significant number of gamma rays and neutrons as it undergoes radioactive decay. These gamma rays and neutrons normally penetrate ordinary matter to a significant distance. Unfortunately this penetrating quality of the radiation makes imaging with classical optics impractical. However, this radiation signature emitted by the nuclear source may be sufficient to be imaged from low-flying aerial platforms carrying Fourier imaging systems. The Fourier imaging system uses a pair of co-aligned absorption grids to measure a selected range of spatial frequencies from an object. These grids typically measure the spatial frequency in only one direction at a time. A grid pair that looks in all directions simultaneously would be an improvement over existing technology. A number of grid pairs governed by various parameters were investigated to solve this problem. By examining numerous configurations, it became apparent that an appropriate spiral pattern could be made to work. A set of equations was found to describe a grid pattern that produces straight fringes. Straight fringes represent a Fourier transform of a point source at infinity. An inverse Fourier transform of this fringe pattern would provide an accurate image (location and intensity) of a point source.

  5. Research on fast Fourier transforms algorithm of huge remote sensing image technology with GPU and partitioning technology.

    PubMed

    Yang, Xue; Li, Xue-You; Li, Jia-Guo; Ma, Jun; Zhang, Li; Yang, Jan; Du, Quan-Ye

    2014-02-01

    Fast Fourier transforms (FFT) is a basic approach to remote sensing image processing. With the improvement of capacity of remote sensing image capture with the features of hyperspectrum, high spatial resolution and high temporal resolution, how to use FFT technology to efficiently process huge remote sensing image becomes the critical step and research hot spot of current image processing technology. FFT algorithm, one of the basic algorithms of image processing, can be used for stripe noise removal, image compression, image registration, etc. in processing remote sensing image. CUFFT function library is the FFT algorithm library based on CPU and FFTW. FFTW is a FFT algorithm developed based on CPU in PC platform, and is currently the fastest CPU based FFT algorithm function library. However there is a common problem that once the available memory or memory is less than the capacity of image, there will be out of memory or memory overflow when using the above two methods to realize image FFT arithmetic. To address this problem, a CPU and partitioning technology based Huge Remote Fast Fourier Transform (HRFFT) algorithm is proposed in this paper. By improving the FFT algorithm in CUFFT function library, the problem of out of memory and memory overflow is solved. Moreover, this method is proved rational by experiment combined with the CCD image of HJ-1A satellite. When applied to practical image processing, it improves effect of the image processing, speeds up the processing, which saves the time of computation and achieves sound result.

  6. Evaluation of the uncertainty of phase-difference measurements in (quasi-)Fourier transform digital holographic interferometry

    NASA Astrophysics Data System (ADS)

    Doval, Ángel F.; Trillo, Cristina; López Vázquez, José Carlos; Fernández, José L.

    2015-08-01

    Estimation of the uncertainty is an essential requisite for high-end measurement systems. In this communication we derive an expression to evaluate the standard uncertainty of the phase-difference measurements resulting from Fourier and quasi-Fourier transform digital holographic interferometry. We apply the law of propagation of uncertainty, as defined in the "Guide to the expression of uncertainty in measurement" (GUM), to the digital reconstruction of two holograms by Fourier transformation and to the subsequent calculation of the phase change between the holographic reconstructions. The resulting expression allows the evaluation of the uncertainty of the phase difference at every pixel in the reconstruction plane in terms of the measured hologram brightness values and their uncertainty at the whole of the pixels of the original digital holograms. This expression is simplified by assuming a linear dependence between the uncertainty and the local value of the original holograms; in that case, the local uncertainty of the phase difference can be evaluated from the local complex values of the reconstructed holograms. We assess the behavior of the method by comparing the predicted standard uncertainty with the sample variance obtained from experiments conducted under repeatability conditions, and found a good correlation between both quantities. This experimental procedure can be also used to calibrate the parameters of the linear function relating the uncertainty with the local value of the digital holograms, for a given set of operational conditions of the acquisition device.

  7. Comparative analysis on viewing angle change in Fresnel and Fourier holographic images reconstructed by a tilted plane wave.

    PubMed

    Chae, Byung Gyu

    2014-05-20

    We carry out a comparative analysis on a viewing angle change in Fresnel and Fourier holographic images reconstructed by a tilted plane wave. A tilted plane wave illuminating an on-axis hologram generates a diffractive wave carrying the holographic image in a paraxial region of a new diffraction axis. The reconstructed image in the Fresnel hologram is deformed along the new viewing direction, which is well described as Affine transformation. In the Fourier holographic image, the replica of the image is formed without its deformation when the hologram is placed in the front focal plane of the lens, whereas in the case of a hologram that is located at a distance different from a focal length, image deformation arises. This property is investigated through numerical simulation based on a wide-angle diffraction phenomenon. We also perform a similar interpretation for high-order diffraction images appearing in the sampled Fourier hologram and discuss a method for enlarging the viewing angle of the holographic image.

  8. Filling factor characteristics of masking phase-only hologram on the quality of reconstructed images

    NASA Astrophysics Data System (ADS)

    Deng, Yuanbo; Chu, Daping

    2016-03-01

    The present study evaluates the filling factor characteristics of masking phase-only hologram on its corresponding reconstructed image. A square aperture with different filling factor is added on the phase-only hologram of the target image, and average cross-section intensity profile of the reconstructed image is obtained and deconvolved with that of the target image to calculate the point spread function (PSF) of the image. Meanwhile, Lena image is used as the target image and evaluated by metrics RMSE and SSIM to assess the quality of reconstructed image. The results show that the PSF of the image agrees with the PSF of the Fourier transform of the mask, and as the filling factor of the mask decreases, the width of PSF increases and the quality of reconstructed image drops. These characteristics could be used in practical situations where phase-only hologram is confined or need to be sliced or tiled.

  9. Fast Fourier Transform Analysis of Pulmonary Nodules on Computed Tomography Images from Patients with Lung Cancer

    PubMed Central

    Kawago, Mitsumasa; Hirai, Yoshimitsu; Ohashi, Takuya; Tanaka, Yumi; Oura, Shoji; Okamura, Yoshitaka

    2014-01-01

    Purpose: The outlines of primary lung cancers are more complicated than those of metastatic lung tumors on computed tomography (CT) images. This feature is useful for clarifying the diagnosis of pulmonary nodules before surgery. We applied fast Fourier transform (FFT) analysis for quantification of complexity of tumor outline. Methods: Sequential cases of 72 primary lung cancers (Group PL) and 54 metastatic lung tumors (Group MT) were included. The outline of each tumor on chest CT images was described using polar coordinates, and converted to rectangular coordinates, yielding wave data of the tumor outline. The FFT was then used to analyze the wave data. The complexity index (Cxi) was defined as the sum of the amplitude of all harmonics over a fundamental frequency. Results: The Cxi was higher (P <0.0001) for group PL (10.3 ± 6.7 mm) than for group MT (3.2 ± 2.4 mm), and it was correlated with tumor diameter in both groups. The cut-off equation “Cxi = 0.127 DT + 2.23” provided the highest diagnostic accuracy for distinguishing Group PL from Group MT such as a sensitivity of 95.8%, a specificity of 81.5%, and an accuracy of 89.7%. Conclusion: FFT analysis appears useful for quantification of complexity of the tumor outline. PMID:24583708

  10. Development of imaging Fourier-transform spectroscopy for the characterization of turbulent jet flames

    NASA Astrophysics Data System (ADS)

    Harley, Jacob L.

    Recent advances in computational models to simulate turbulent, reactive flow fields have outpaced the ability to collect highly constraining data---throughout the entire flow field---for validating and improving such models. In particular, the ability to quantify in three dimensions both the mean scalar fields (i.e. temperature & species concentrations) and their respective fluctuation statistics via hyperspectral imaging would be a game-changing advancement in combustion diagnostics, with high impact in both validation and improvement efforts for computational combustion models. This research effort establishes imaging Fourier- transform spectrometry (IFTS) as a valuable tool (which complements laser diagnostics) for the study of turbulent combustion. Specifically, this effort (1) demonstrates that IFTS can be used to quantitatively measure spatially resolved spectra from a canonical turbulent flame; (2) establishes the utility of quantile spectra in first-ever quantitative comparisons between measured and modeled turbulent radiation interaction (TRI); (3) develops a simple onion-peeling-like spectral inversion methodology suitable for estimating radial scalar distributions in axisymmetric, optically-thick flames; (4) builds understanding of quantile spectra and demonstrates proof of concept for their use in estimating scalar fluctuation statistics.

  11. Design considerations for the development of a space qualification Short Wavelength Imaging Fourier Transform Spectrometer (SWIFTS)

    SciTech Connect

    Abbink, R.E.

    1997-06-01

    This document is the final report on work performed at Sandia National Laboratories during FY 1992 and 1993 for a Laboratory Directed Research and Development (LDRD) program to look at problems associated with the design and long term operation of a short wavelength imaging Fourier Transform (FT) spectrometer for use in space. In attempts to answer two fundamental questions: is a FT spectrometer with a resolution of 1 cm{sup {minus}1} covering the silicon detector wavelength range of 0.4 to 1.1 microns feasible in a long life space instrument and, if so, is it the best method of obtaining the desired information? Emphasis has been on identifying methods which minimize reliance on precision mechanical alignment and precise velocity control. An important consideration has also been to develop methods which will be compatible with a variety of self-scanning solid state imaging devices. A breadboard instrument was constructed using cube corner retroreflectors and a laser diode position reference. Some preliminary results are reported. This work is primarily intended to act as an aid to engineers at Sandia who wish to pursue the fabrication of a flight qualified instrument. The theoretical parts are intended to be somewhat tutorial in nature to aid the engineer who is not familiar with FT spectroscopy.

  12. Imaging Fourier-transform spectrometer measurements of a turbulent nonpremixed jet flame.

    PubMed

    Harley, Jacob L; Rankin, Brent A; Blunck, David L; Gore, Jay P; Gross, Kevin C

    2014-04-15

    This work presents recent measurements of a CH4/H2/N2 turbulent nonpremixed jet flame using an imaging Fourier-transform spectrometer (IFTS). Spatially resolved (128×192 pixels, 0.72  mm/pixel) mean radiance spectra were collected between 1800  cm(-1)≤ν˜≤4500  cm(-1) (2.22  μm≤λ≤5.55  μm) at moderate spectral resolution (δν=16  cm(-1), δλ=20  nm) spanning the visible flame. Higher spectral-resolution measurements (δν=0.25  cm(-1), δλ=0.3  nm) were also captured on a smaller window (8×192) at 20, 40, and 60 diameters above the jet exit and reveal the rotational fine structure associated with various vibrational transitions in CH4, CO2, CO, and H2O. These new imaging measurements compare favorably with existing spectra acquired at select flame locations, demonstrating the capability of IFTS for turbulent combustion studies.

  13. The study of a single BGC823 cell using Fourier transform infrared microspectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Wang, Xin; Qi, Zeming; Wang, Shengyi; Liu, Gang; Gao, Helong; Tian, Yangchao

    2011-09-01

    In order to investigate gastric cancer at cellular and sub-cellular level, a single human gastric adenocarcinoma BGC823 cell was studied by an infrared microscope equipped with a focal plane array (FPA) detector. The spectra showed difference between the nucleus and the endoplasmic reticulum (ER) of the BGC823 cell. The peak of v asPO 2- was shifted to a higher wavenumber at the nucleus compared with that at the ER. The height ratios of 2954 cm -1/2922 cm -1 (CH 3/CH 2) and 1088 cm -1/1539 cm -1 (DNA/amide II) of the nucleus were significantly higher than those of the ER. Furthermore, chemical images reveal the intensity distributions of lipids, proteins and DNA of the single BGC823 cell, and the intense absorptions of proteins and DNA were observed in the nuclear region of the cell while the intense absorption of lipids was found in the ER region of the cell. The Fourier transform infrared (FTIR) microspectroscopic imaging result indicates the study of the single gastric cancer cell at sub-cellular level can be beneficial for knowing gastric cancer more which will be of great importance for the study and diagnosis of gastric cancer. The result also suggests that FPA is a useful tool in the study of a single cell and may be a powerful tool for study and diagnosis of gastric cancer.

  14. Fourier Transform Infrared Spectroscopic Imaging of Fracture Healing in the Normal Mouse

    PubMed Central

    Gollwitzer, Hans; Yang, Xu; Spevak, Lyudmila; Lukashova, Lyudmila; Nocon, Allina; Fields, Kara; Pleshko, Nancy; Courtland, Hayden William; Bostrom, Mathias P.; Boskey, Adele L.

    2015-01-01

    Fourier transform infrared spectroscopic imaging (FTIRI) was used to study bone healing with spatial analysis of various callus tissues in wild type mice. Femoral fractures were produced in 28 male C57BL mice by osteotomy. Animals were sacrificed at 1, 2, 4, and 8 weeks to obtain callus tissue at well-defined healing stages. Following microcomputerized tomography, bone samples were cut in consecutive sections for FTIRI and histology, allowing for spatial correlation of both imaging methods in different callus areas (early calcified cartilage, woven bone, areas of intramembranous and endochondral bone formation). Based on FTIRI, mineral/matrix ratio increased significantly during the first 4 weeks of fracture healing in all callus areas and correlated with bone mineral density measured by micro-CT. Carbonate/phosphate ratio was elevated in newly formed calcified tissue and at week 2 attained values comparable to cortical bone. Collagen maturity and mineral crystallinity increased during weeks 1–8 in most tissues while acid phosphate substitution decreased. Temporal and callus area dependent changes were detected throughout the healing period. These data assert the usefulness of FTIRI for evaluation of fracture healing in the mouse and its potential to evaluate pathologic fracture healing and the effects of therapeutic interventions. PMID:26034749

  15. Quantitative analysis of diseased horse tendons using Fourier-transform-second-harmonic generation imaging

    NASA Astrophysics Data System (ADS)

    Sivaguru, Mayandi; Durgam, Sushmitha; Ambekar, Raghu; Luedtke, David; Fried, Glenn; Stewart, Allison; Toussaint, Kimani C., Jr.

    2011-03-01

    Fourier transform-second-harmonic generation (FT-SHG) imaging is used to quantitatively assess the structural organization of collagen fibers in tendonitis-induced horse tendons. Fiber orientation, isotropy, and the ratio of forward to backward SHG signal (F/B ratio) are used to differentiate the fiber organization between the normal and diseased horse tendons. Each second-harmonic generation (SHG) image is divided into several smaller regions of interest (ROI) and the aforementioned quantitative metrics are calculated across the whole grid. ROIs are further labeled as dark (no or minimal presence of fibers), isotropic (random fiber organization), or anisotropic (regular fiber organization) regions. Results show that the normal tendon possesses minimal isotropic regions and small standard deviations in the histograms of orientation and F/B ratio, indicating an intact and highly regular fiber organization. However, the tendonitis-induced horse tendons possess higher number of dark and isotropic regions, and larger standard deviations of the measured parameters, suggesting significantly disoriented and disorganized collagen fibers. This type of quantification would be highly beneficial in diagnosing and determining the stage of tendonitis in clinical settings. Not limited to tendonitis, the technique could also be applied to other diseases that structurally affect collagen fibers. The advantage of FT-SHG over the conventional polarization microscopy is also discussed.

  16. Compact snapshot birefringent imaging Fourier transform spectrometer for remote sensing and endoscopy

    NASA Astrophysics Data System (ADS)

    Kudenov, Michael W.; Banerjee, Bhaskar; Chan, Victoria C.; Dereniak, Eustace L.

    2012-09-01

    The design and implementation of a compact multiple-image Fourier transform spectrometer (FTS) is presented. Based on the multiple-image FTS originally developed by A. Hirai, the presented device offers significant advantages over his original implementation. Namely, its birefringent nature results in a common-path interferometer which makes the spectrometer insensitive to vibration. Furthermore, it enables the potential of making the instrument ultra-compact, thereby improving the portability of the sensor. The theory of the birefringent FTS is provided, followed by details of its specific embodiment. A laboratory proof of concept of the sensor, designed and developed at the Optical Detection Lab, is also presented. Spectral measurements of laboratory sources are provided, including measurements of light-emitting diodes and gas-discharge lamps. These spectra are verified against a calibrated Ocean Optics USB2000 spectrometer. Other data were collected outdoors and of a rat esophagus, demonstrating the sensor's ability to resolve spectral signatures in both standard outdoor lighting and environmental conditions, as well as in fluorescence spectroscopy.

  17. Sub-pixel spatial resolution wavefront phase imaging

    NASA Technical Reports Server (NTRS)

    Stahl, H. Philip (Inventor); Mooney, James T. (Inventor)

    2012-01-01

    A phase imaging method for an optical wavefront acquires a plurality of phase images of the optical wavefront using a phase imager. Each phase image is unique and is shifted with respect to another of the phase images by a known/controlled amount that is less than the size of the phase imager's pixels. The phase images are then combined to generate a single high-spatial resolution phase image of the optical wavefront.

  18. Nonlinear phase interaction between nonstationary signals: a comparison study of methods based on Hilbert-Huang and Fourier transforms.

    PubMed

    Lo, Men-Tzung; Novak, Vera; Peng, C-K; Liu, Yanhui; Hu, Kun

    2009-06-01

    Phase interactions among signals of physical and physiological systems can provide useful information about the underlying control mechanisms of the systems. Physical and biological recordings are often noisy and exhibit nonstationarities that can affect the estimation of phase interactions. We systematically studied effects of nonstationarities on two phase analyses including (i) the widely used transfer function analysis (TFA) that is based on Fourier decomposition and (ii) the recently proposed multimodal pressure flow (MMPF) analysis that is based on Hilbert-Huang transform (HHT)-an advanced nonlinear decomposition algorithm. We considered three types of nonstationarities that are often presented in physical and physiological signals: (i) missing segments of data, (ii) linear and step-function trends embedded in data, and (iii) multiple chaotic oscillatory components at different frequencies in data. By generating two coupled oscillatory signals with an assigned phase shift, we quantify the change in the estimated phase shift after imposing artificial nonstationarities into the oscillatory signals. We found that all three types of nonstationarities affect the performances of the Fourier-based and the HHT-based phase analyses, introducing bias and random errors in the estimation of the phase shift between two oscillatory signals. We also provided examples of nonstationarities in real physiological data (cerebral blood flow and blood pressure) and showed how nonstationarities can complicate result interpretation. Furthermore, we propose certain strategies that can be implemented in the TFA and the MMPF methods to reduce the effects of nonstationarities, thus improving the performances of the two methods.

  19. Image encryption based on the reality-preserving multiple-parameter fractional Fourier transform and chaos permutation

    NASA Astrophysics Data System (ADS)

    Lang, Jun

    2012-07-01

    In recent years, a number of methods have been proposed in the literature for the encryption of two-dimensional information by use of the fractional Fourier transform, but most of their encryptions are complex value and need digital hologram technique to record their encrypted information, which is inconvenience for digital transmission. In this paper, we first propose a novel reality-preserving multiple-parameter fractional Fourier transform which share real-valuedness outputs as well as most of the properties required for a fractional transform. Then we propose a new approach for image encryption based on the real-valuedness of the reality-preserving multiple-parameter fractional Fourier transform and the decorrelation property of chaotic maps in order to meet the requirements of the secure image transmission. In the proposed scheme, the image is encrypted by juxtaposition of sections of the image in the reality-preserving multiple-parameter fractional Fourier domains and the alignment of sections is determined by chaotic logistic maps. Numerical simulations are performed to demonstrate that the proposed method is reliable and more robust to blind decryption than several existing methods.

  20. Determination of grain size distribution function using two-dimensional Fourier transforms of tone pulse encoded images

    NASA Technical Reports Server (NTRS)

    Generazio, E. R.

    1986-01-01

    Microstructural images may be tone pulse encoded and subsequently Fourier transformed to determine the two-dimensional density of frequency components. A theory is developed relating the density of frequency components to the density of length components. The density of length components corresponds directly to the actual grain size distribution function from which the mean grain shape, size, and orientation can be obtained.

  1. Security enhancement of a phase-truncation based image encryption algorithm.

    PubMed

    Wang, Xiaogang; Zhao, Daomu

    2011-12-20

    The asymmetric cryptosystem, which is based on phase-truncated Fourier transforms (PTFTs), can break the linearity of conventional systems. However, it has been proven to be vulnerable to a specific attack based on iterative Fourier transforms when the two random phase masks are used as public keys to encrypt different plaintexts. An improvement from the asymmetric cryptosystem may be taken by relocating the amplitude values in the output plane. In this paper, two different methods are adopted to realize the amplitude modulation of the output image. The first one is to extend the PTFT-based asymmetrical cryptosystem into the anamorphic fractional Fourier transform domain directly, and the second is to add an amplitude mask in the Fourier plane of the encryption scheme. Some numerical simulations are presented to prove the good performance of the proposed cryptosystems.

  2. Spectrum reconstruction using relative-deviation-based kernel regression in temporally and spatially modulated Fourier transform imaging spectrometer.

    PubMed

    Huang, Fengzhen; Yuan, Yan; Li, Jingzhen; Cao, Jun

    2015-08-01

    During the temporally and spatially modulated Fourier transform imaging spectrometer push-broom scanning process, the motion state of the spectrometer platform can vary. Thus, the target interferogram obtained from the image sequence deviates from the ideal interferogram obtained using high platform stability. The recovered target spectrum will not reflect the true target characteristics. We adopted target tracking to acquire the target position in the image sequence via a proposed kernel regression, with a relative deviation method for determining the target intensities, and the recovery of the spectrogram using the nonuniform fast Fourier transform algorithm. We tested our algorithm on simulated and experimentally obtained aerial images and, from comparison with accurate spectrograms, demonstrate the effectiveness of the proposed method.

  3. Fourier transform infrared spectroscopic imaging identifies early biochemical markers of tissue damage

    NASA Astrophysics Data System (ADS)

    Varma, Vishal K.; Ohlander, Samuel; Nguyen, Peter; Vendryes, Christopher; Parthiban, Sujeeth; Hamilton, Blake; Wallis, M. Chad; Kajdacsy-Balla, Andre; Hannaford, Blake; Lendvay, Thomas; Hotaling, James M.; Walsh, Michael J.

    2014-03-01

    Fourier Transform Infrared (FT-IR) spectroscopic imaging can allow for the rapid imaging of tissue biochemistry in a label-free and non-perturbing fashion. With the rapid adoption of new minimally invasive surgery (MIS) technologies over the last 20 years, adequate skill to safely and effectively use these technologies may not be achieved and risk of undue physical pressure being placed on tissues is a concern. Previous work has demonstrated that a number of histological stains can detect tissue damage, however, this process requires the initiation and progression of a signaling cascade that results in the epitope of interest being expressed. We proposed to identify the early biochemical markers associated with physical tissue damage from applied forces, thus not requiring transcriptional and translational protein synthesis as traditional immunohistochemistry does. To demonstrate that FT-IR can measure biochemical changes in tissues that have undergone physical force, we took ex-vivo lamb's liver that had been freshly excised and applied varying levels of physical pressure (0kPa to 30kPa). Tissues were then formalin-fixed, paraffin-embedded, and sectioned on to glass for H and E staining to identify damage and on to an IR slide for FT-IR imaging. Regions of interest containing hepatocytes were identified and average FT-IR spectra were extracted from the damaged and undamaged livers. FT-IR spectra showed clear biochemical changes associated with tissue damage. In addition, chemical changes could be observed proceeding histological changes observed when using conventional staining approaches.

  4. Visual appearance effect on modified reconstruction color images of optical Fourier transform hologram by means of digital image processing

    NASA Astrophysics Data System (ADS)

    Iizuka, Masayuki; Kariya, Makoto; Uehara, Shinobu; Nakashima, Yoshio; Takamatsu, Mamoru

    2003-05-01

    A blue white He-Cd laser composed of three R/G/B component beams in place of He-Ne laser is directly applied to fabricate the optical Fourier transform hologram (OFTH) using the red sensitive silver halide material (SO-253 film) for holography. As a result, the red beams play an important role as the coherent beams in the fabrication of OFTH. A green solid state laser is applied to fabricate the OFTH using the same film for holography. The visual appearance of reconstruted color images caused by He-Cd laser is discussed in contrast to that of an ordinary OFTH which can be made using the He-Ne laser and solid state laser. The visual color effect using the He-Cd laser is checked from the viewpoint of the relative real size and its place in the OFTH, and the visual depth sensation of overlapped ghost images called cross-talk in the Fresnel hologram. The purpose using a commercially available software such as HSL color model is to carry out the intuitive modification of overlapped and deteriorated color images in the digital reconstruction of OFTH and Fresnel hologram.

  5. Fourier plane colorimetric sensing using broadband imaging of surface plasmons and application to biosensing

    SciTech Connect

    Arora, P.; Krishnan, A.

    2015-12-21

    We demonstrate an optical technique for refractive index and thickness sensing of sub-wavelength-thick dielectric analytes. The technique utilizes the broadband, multimode, directional leakage radiation arising from the excitation of hybrid mode surface plasmons (SP) on low aspect ratio periodic plasmonic substrates with period ≈λ. The approach requires relaxed fabrication tolerances compared to extra ordinary transmission-based sensing techniques, wherein minor shifts in the fabricated dimensions result in a very large change from the designed resonant wavelength. We show that refractive index perturbations due to about 10-nm-thick dielectric can be captured optically by the usage of carefully designed plasmonic substrates, a halogen lamp source, free-space optical components, polarizers, and a low-end, consumer-grade charge coupled device camera. The plasmonic substrates were designed for converting the signature of hybrid mode SP excitation into a transmission peak by utilizing a thin homogeneous metal layer sandwiched between the periodic plasmonic structures and the substrate. The resonance is highly sensitive to the refractive index and thickness of the analyte superstrate. The excitation of hybrid mode SP results in a polarization rotation of 90° of the leaked radiation at resonant wavelength. In order to eliminate the problem of image registration (i.e., placing the same feature in the same pixel of the image, for comparison before and after a change in refractive index) for sensing, we perform the color analysis in the Fourier plane. The change in color of the bright emitted spot with highest momentum, corresponding to the leakage of fundamental SP mode, was used to measure the changes in refractive index, whereas the number and color of spots of lower momenta, corresponding to higher-order Fabry Perot modes, was used to measure the variation in thickness. We further show that the Fourier plane analysis can also be used to sense the index of thicker

  6. Femtosecond digital in-line holography with the fractional Fourier transform: application to phase-contrast metrology

    NASA Astrophysics Data System (ADS)

    Brunel, M.; Shen, H.; Coetmellec, S.; Lebrun, D.; Ait Ameur, K.

    2012-03-01

    The possibility to analyze transparent phase objects using femtosecond digital in-line holography is demonstrated. We show that the diffraction patterns produced by the diffraction of 20-fs pulses by pure phase objects can be advantageously processed by using the fractional Fourier transform. The optimal fractional orders lead to the longitudinal location of the phase object while the analysis of the reconstructed patterns leads to its diameter and to the value of the phase shift. Simulations and experimental results are in good concordance. This work shows new important applications of these reconstruction techniques in the domain of digital phase-contrast metrology. We further show that the use of femtosecond pulses results in a significant reduction of coherent noise.

  7. Practical protocols for fast histopathology by Fourier transform infrared spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Keith, Frances N.; Reddy, Rohith K.; Bhargava, Rohit

    2008-02-01

    Fourier transform infrared (FT-IR) spectroscopic imaging is an emerging technique that combines the molecular selectivity of spectroscopy with the spatial specificity of optical microscopy. We demonstrate a new concept in obtaining high fidelity data using commercial array detectors coupled to a microscope and Michelson interferometer. Next, we apply the developed technique to rapidly provide automated histopathologic information for breast cancer. Traditionally, disease diagnoses are based on optical examinations of stained tissue and involve a skilled recognition of morphological patterns of specific cell types (histopathology). Consequently, histopathologic determinations are a time consuming, subjective process with innate intra- and inter-operator variability. Utilizing endogenous molecular contrast inherent in vibrational spectra, specially designed tissue microarrays and pattern recognition of specific biochemical features, we report an integrated algorithm for automated classifications. The developed protocol is objective, statistically significant and, being compatible with current tissue processing procedures, holds potential for routine clinical diagnoses. We first demonstrate that the classification of tissue type (histology) can be accomplished in a manner that is robust and rigorous. Since data quality and classifier performance are linked, we quantify the relationship through our analysis model. Last, we demonstrate the application of the minimum noise fraction (MNF) transform to improve tissue segmentation.

  8. ORBS: A data reduction software for the imaging Fourier transform spectrometers SpIOMM and SITELLE

    NASA Astrophysics Data System (ADS)

    Martin, T.; Drissen, L.; Joncas, G.

    2012-09-01

    SpIOMM (Spectromètre-Imageur de l'Observatoire du Mont Mégantic) is still the only operational astronomical Imaging Fourier Transform Spectrometer (IFTS) capable of obtaining the visible spectrum of every source of light in a field of view of 12 arc-minutes. Even if it has been designed to work with both outputs of the Michelson interferometer, up to now only one output has been used. Here we present ORBS (Outils de Réduction Binoculaire pour SpIOMM/SITELLE), the reduction software we designed in order to take advantage of the two output data. ORBS will also be used to reduce the data of SITELLE (Spectromètre-Imageur pour l' Étude en Long et en Large des raies d' Émissions) { the direct successor of SpIOMM, which will be in operation at the Canada-France- Hawaii Telescope (CFHT) in early 2013. SITELLE will deliver larger data cubes than SpIOMM (up to 2 cubes of 34 Go each). We thus have made a strong effort in optimizing its performance efficiency in terms of speed and memory usage in order to ensure the best compliance with the quality characteristics discussed with the CFHT team. As a result ORBS is now capable of reducing 68 Go of data in less than 20 hours using only 5 Go of random-access memory (RAM).

  9. Fourier-Doppler Imaging of Line Profile Variations in ζ Ophiuchi

    NASA Astrophysics Data System (ADS)

    Jankov, S.; Janot-Pacheco, E.; Leister, N. V.

    2000-09-01

    We present, for the first time, the Fourier-Doppler Imaging (FDI) analysis of periodic line profile variations in a ζ Oph-type star. For this purpose we obtained, in the period from 1996 May 3 to May 5, a total of 242 high-resolution, high signal-to-noise ratio spectra of the Be star ζ Oph itself. Using the FDI technique, we examine the variations in both time and wavelength and complement it with time series analysis. This kind of analysis is valid for both the nonradial pulsator model and the rotation modulation model, but we discuss the results in terms of the former model, considering it the more likely explanation for the observed line profile variability. Two distinct groups of modes are detected: medium (4<=l~|m|<=8) and high-degree modes (which could be associated with 13<=l~|m|<=17). It is shown that the high-frequency oscillations were strongly confined to an equatorial belt narrower than 20° and that the line profile variability was caused predominantly by sectoral modes, although tesseral modes |m|=l-1 are not excluded in taking into account the effect of fast rotation. We discuss the modal nature of the waves with respect to the characteristic oscillation periods in the corotating frame and the high amplitude of the projected rotational velocity variations (~20 km s-1).

  10. Fourier transform infrared imaging spectroscopy analysis of collagenase-induced cartilage degradation.

    PubMed

    West, P A; Torzilli, P A; Chen, C; Lin, P; Camacho, N P

    2005-01-01

    Collagenase treatment of cartilage serves as an in vitro model of the pathological collagen degradation that occurs in the disease osteoarthritis (OA). Fourier transform infrared imaging spectroscopic (FT-IRIS) analysis of collagenase-treated cartilage is performed to elucidate the molecular origin of the spectral changes previously found at the articular surface of human OA cartilage. Bovine cartilage explants are treated with 0.1% collagenase for 0, 15, or 30 min. In situ collagen cleavage is assessed using immunofluorescent staining with an antibody specific for broken type II collagen. The FT-IRIS analysis of the control and treated specimens mirrors the differences previously found between normal and OA cartilage using an infrared fiber optic probe (IFOP). With collagenase treatment, the amide II/1338 cm(-1) area ratio increases while the 1238 cm(-1)/1227 cm(-1) peak ratio decreases. In addition, polarized FT-IRIS demonstrates a more random orientation of the collagen fibrils that correlate spatially with the immunofluorescent-determined regions of broken type II collagen. We can therefore conclude that the spectral changes observed in the collagenase-treated cartilage, and similarly in OA cartilage, arise from changes in collagen structure. These findings support the use of mid-infrared spectral analysis, in particular the minimally invasive IFOP, as potential techniques for the diagnosis and management of degenerative joint diseases such as osteoarthritis.

  11. Fourier transform infrared spectroscopic imaging of cardiac tissue to detect collagen deposition after myocardial infarction

    NASA Astrophysics Data System (ADS)

    Cheheltani, Rabee; Rosano, Jenna M.; Wang, Bin; Sabri, Abdel Karim; Pleshko, Nancy; Kiani, Mohammad F.

    2012-05-01

    Myocardial infarction often leads to an increase in deposition of fibrillar collagen. Detection and characterization of this cardiac fibrosis is of great interest to investigators and clinicians. Motivated by the significant limitations of conventional staining techniques to visualize collagen deposition in cardiac tissue sections, we have developed a Fourier transform infrared imaging spectroscopy (FT-IRIS) methodology for collagen assessment. The infrared absorbance band centered at 1338 cm-1, which arises from collagen amino acid side chain vibrations, was used to map collagen deposition across heart tissue sections of a rat model of myocardial infarction, and was compared to conventional staining techniques. Comparison of the size of the collagen scar in heart tissue sections as measured with this methodology and that of trichrome staining showed a strong correlation (R=0.93). A Pearson correlation model between local intensity values in FT-IRIS and immuno-histochemical staining of collagen type I also showed a strong correlation (R=0.86). We demonstrate that FT-IRIS methodology can be utilized to visualize cardiac collagen deposition. In addition, given that vibrational spectroscopic data on proteins reflect molecular features, it also has the potential to provide additional information about the molecular structure of cardiac extracellular matrix proteins and their alterations.

  12. Vibrational mapping of sinonasal lesions by Fourier transform infrared imaging spectroscopy

    NASA Astrophysics Data System (ADS)

    Giorgini, Elisabetta; Sabbatini, Simona; Conti, Carla; Rubini, Corrado; Rocchetti, Romina; Re, Massimo; Vaccari, Lisa; Mitri, Elisa; Librando, Vito

    2015-12-01

    Fourier transform infrared imaging (FTIRI) is a powerful tool for analyzing biochemical changes in tumoral tissues. The head and neck region is characterized by a great variety of lesions, with different degrees of malignancy, which are often difficult to diagnose. Schneiderian papillomas are sinonasal benign neoplasms arising from the Schneiderian mucosa; they can evolve into malignant tumoral lesions (squamous cell carcinoma). In addition, they can sometimes be confused with the more common inflammatory polyps. Therefore, an early and definitive diagnosis of this pathology is mandatory. Progressing in our research on the study of oral cavity lesions, 15 sections consisting of inflammatory sinonasal polyps, benign Schneiderian papillomas, and sinonasal undifferentiated carcinomas were analyzed using FTIRI. To allow a rigorous description of these pathologies and to gain objective diagnosis, the epithelial layer and the adjacent connective tissue of each section were separately investigated by following a multivariate analysis approach. According to the nature of the lesion, interesting modifications were detected in the average spectra of the different tissue components, above all in the lipid and protein patterns. Specific band-area ratios acting as spectral markers of the different pathologies were also highlighted.

  13. Fourier transform infrared imaging and infrared fiber optic probe spectroscopy identify collagen type in connective tissues.

    PubMed

    Hanifi, Arash; McCarthy, Helen; Roberts, Sally; Pleshko, Nancy

    2013-01-01

    Hyaline cartilage and mechanically inferior fibrocartilage consisting of mixed collagen types are frequently found together in repairing articular cartilage. The present study seeks to develop methodology to identify collagen type and other tissue components using Fourier transform infrared (FTIR) spectral evaluation of matrix composition in combination with multivariate analyses. FTIR spectra of the primary molecular components of repair cartilage, types I and II collagen, and aggrecan, were used to develop multivariate spectral models for discrimination of the matrix components of the tissues of interest. Infrared imaging data were collected from bovine bone, tendon, normal cartilage, meniscus and human repair cartilage tissues, and composition predicted using partial least squares analyses. Histology and immunohistochemistry results were used as standards for validation. Infrared fiber optic probe spectral data were also obtained from meniscus (a tissue with mixed collagen types) to evaluate the potential of this method for identification of collagen type in a minimally-invasive clinical application. Concentration profiles of the tissue components obtained from multivariate analysis were in excellent agreement with histology and immunohistochemistry results. Bone and tendon showed a uniform distribution of predominantly type I collagen through the tissue. Normal cartilage showed a distribution of type II collagen and proteoglycan similar to the known composition, while in repair cartilage, the spectral distribution of both types I and II collagen were similar to that observed via immunohistochemistry. Using the probe, the outer and inner regions of the meniscus were shown to be primarily composed of type I and II collagen, respectively, in accordance with immunohistochemistry data. In summary, multivariate analysis of infrared spectra can indeed be used to differentiate collagen type I and type II, even in the presence of proteoglycan, in connective tissues

  14. Radiometric modeling and calibration of the Geostationary Imaging Fourier Transform Spectrometer (GIFTS) ground based measurement experiment

    NASA Astrophysics Data System (ADS)

    Tian, Jialin; Smith, William L.; Gazarik, Michael J.

    2008-12-01

    The ultimate remote sensing benefits of the high resolution Infrared radiance spectrometers will be realized with their geostationary satellite implementation in the form of imaging spectrometers. This will enable dynamic features of the atmosphere's thermodynamic fields and pollutant and greenhouse gas constituents to be observed for revolutionary improvements in weather forecasts and more accurate air quality and climate predictions. As an important step toward realizing this application objective, the Geostationary Imaging Fourier Transform Spectrometer (GIFTS) Engineering Demonstration Unit (EDU) was successfully developed under the NASA New Millennium Program, 2000-2006. The GIFTS-EDU instrument employs three focal plane arrays (FPAs), which gather measurements across the long-wave IR (LWIR), short/mid-wave IR (SMWIR), and visible spectral bands. The GIFTS calibration is achieved using internal blackbody calibration references at ambient (260 K) and hot (286 K) temperatures. In this paper, we introduce a refined calibration technique that utilizes Principle Component (PC) analysis to compensate for instrument distortions and artifacts, therefore, enhancing the absolute calibration accuracy. This method is applied to data collected during the GIFTS Ground Based Measurement (GBM) experiment, together with simultaneous observations by the accurately calibrated AERI (Atmospheric Emitted Radiance Interferometer), both simultaneously zenith viewing the sky through the same external scene mirror at ten-minute intervals throughout a cloudless day at Logan Utah on September 13, 2006. The accurately calibrated GIFTS radiances are produced using the first four PC scores in the GIFTS-AERI regression model. Temperature and moisture profiles retrieved from the PC-calibrated GIFTS radiances are verified against radiosonde measurements collected throughout the GIFTS sky measurement period. Using the GIFTS GBM calibration model, we compute the calibrated radiances from data

  15. Fuzzy Logic Classification of Imaging Laser Desorption Fourier Transform Mass Spectrometry Data

    SciTech Connect

    Timothy R. McJunkin; Jill R. Scott

    2008-06-01

    The fuzzy logic method is applied to classification of mass spectra obtained with an imaging internal source Fourier transform mass spectrometer (I2LD-FTMS). Traditionally, an operator uses the relative abundance of ions with specific mass-to-charge (m/z) ratios to categorize spectra. An operator does this by comparing the spectrum of m/z versus abundance of an unknown sample against a library of spectra from known samples. Automated positioning and acquisition allow the I2LD-FTMS to acquire data from very large grids, which would require classification of up to 3600 spectra per hour to keep pace with the acquisition. The tedious job of classifying numerous spectra generated in an I2LD-FTMS imaging application can be replaced by a fuzzy rule base if the cues an operator uses can be encapsulated. Appropriate methods for assigning fuzzy membership values for inputs (e.g., mass spectrum abundances) and choice of fuzzy inference operators to translate linguistic antecedent into confidence values for the consequence (or in this case the classification) is followed by using the maximum confidence and a necessary minimum threshold for making a crisp decision. This paper also describes a method for gathering statistics on ions, which are not currently used in the rule base, but which may be candidates for making the rule base more accurate and complete or to form new rule bases based on data obtained from known samples. A spatial method for classifying spectra with low membership values, based on neighboring sample classifications, is also presented.

  16. A new anisotropy index on trabecular bone radiographic images using the fast Fourier transform

    PubMed Central

    Brunet-Imbault, Barbara; Lemineur, Gerald; Chappard, Christine; Harba, Rachid; Benhamou, Claude-Laurent

    2005-01-01

    Background The degree of anisotropy (DA) on radiographs is related to bone structure, we present a new index to assess DA. Methods In a region of interest from calcaneus radiographs, we applied a Fast Fourier Transform (FFT). All the FFT spectra involve the horizontal and vertical components corresponding respectively to longitudinal and transversal trabeculae. By visual inspection, we measured the spreading angles: Dispersion Longitudinal Index (DLI) and Dispersion Transverse Index (DTI) and calculated DA = 180/(DLI+DTI). To test the reliability of DA assessment, we synthesized images simulating radiological projections of periodic structures with elements more or less disoriented. Results Firstly, we tested synthetic images which comprised a large variety of structures from highly anisotropic structure to the almost isotropic, DA was ranging from 1.3 to 3.8 respectively. The analysis of the FFT spectra was performed by two observers, the Coefficients of Variation were 1.5% and 3.1 % for intra-and inter-observer reproducibility, respectively. In 22 post-menopausal women with osteoporotic fracture cases and 44 age-matched controls, DA values were respectively 1.87 ± 0.15 versus 1.72 ± 0.18 (p = 0.001). From the ROC analysis, the Area Under Curve (AUC) were respectively 0.65, 0.62, 0.64, 0.77 for lumbar spine, femoral neck, total femoral BMD and DA. Conclusion The highest DA values in fracture cases suggest that the structure is more anisotropic in osteoporosis due to preferential deletion of trabeculae in some directions. PMID:15927072

  17. Phase contrast imaging of cochlear soft tissue

    NASA Astrophysics Data System (ADS)

    Shintani Smith, Stephanie; Hwang, Margaret; Rau, Christoph; Fishman, Andrew J.; Lee, Wah-Keat; Richter, Claus-Peter

    2011-03-01

    A noninvasive technique to image soft tissue could expedite diagnosis and disease management in the auditory system. We propose inline phase contrast imaging with hard X-rays as a novel method that overcomes the limitations of conventional absorption radiography for imaging soft tissue. In this study, phase contrast imaging of mouse cochleae was performed at the Argonne National Laboratory Advanced Photon Source. The phase contrast tomographic reconstructions show soft tissue structures of the cochlea, including the inner pillar cells, the inner spiral sulcus, the tectorial membrane, the basilar membrane, and the Reissner's membrane. The results suggest that phase contrast X-ray imaging and tomographic techniques hold promise to noninvasively image cochlear structures at an unprecedented cellular level.

  18. Investigation of Moiré pattern-based phase retrieval approach for differential phase-contrast cone beam CT imaging using a hospital-grade tube

    NASA Astrophysics Data System (ADS)

    Cai, Weixing; Ning, Ruola; Yu, Yang; Liu, Jiangkun; Conover, David

    2012-03-01

    The phase stepping algorithm is commonly used for phase retrieval in grating-based differential phase-contrast (DPC) imaging, which requires multiple intensity images to compute one DPC image. It is not efficient for data acquisition, especially in the case of dynamic imaging using either DPC imaging or DPC-based come beam CT (DPC-CBCT) imaging. A Fourier transform-based approach has been developed for fringe pattern analysis in optics, and it was recently implemented into a synchrotron-based DPC tomography system. In this research, this approach is further developed for a bench-top DPC-CBCT imaging system with a hospital-grade x-ray tube. The key idea is to separate carrier fringes and object information in Fourier domain of the interferogram and to reconstruct the differentiated phase information using the object information. Only one interferogram is required for phase retrieval at a cost of spatial resolution. The fringes of moiré patterns are used as the carrier fringes, and a phantom is scanned to evaluate the approach. Various interferograms with different carrier fringe frequencies are investigated and the reconstruction image quality is evaluated in terms of contrast, noise and sharpness. The results indicated that the DPC images can be effectively retrieved using the Fourier transform-based approach and the reconstructed phase coefficient showed better contrast compared to that of attenuation-based contrast. The spatial resolution is acceptable in the phantom studies although it is not as good as the results of phase-stepping approach. The Fourier transform-based phase retrieval approach is able to greatly simplify data acquisition, to improve the temporal resolution and to make it possible for dynamic DPC-CBCT imaging. It is promising for perfusion imaging where spatial resolution is not a concern.

  19. Balloon Demonstrator Imaging Fourier Transform Spectrometer for the Measurement of Methane and Carbon Dioxide over the Arctic

    NASA Astrophysics Data System (ADS)

    Vaziri Z., Zahra; McElroy, Charles T.; Feng, Keh-Harng; Moeini, Omid; Walker, Kaley A.; Martin, Randall; Grandmont, Frederic J.

    2015-04-01

    Arctic climate is changing more rapidly than expected. Multi-year ice is melting and opening the way for shipping and exploration activity for natural resources which in turn increases air pollution. Observing greenhouse gases on a global scale is essential to monitor climate change, especially in the Arctic. Several space missions monitor trace gasses but are in low-earth, sun synchronous orbits and do not have a 24/7 view of northern latitudes. The Canadian Space Agency (CSA), along with other Canadian government departments, is proposing the Polar Communications and Weather (PCW) satellite to provide weather, communication and atmospheric composition information over the Arctic. The use of two satellites in out-of-phase highly elliptical three-apogee orbits with an apogee at ~40,000 km over the Arctic, will provide continuous quasi-geostationary viewing of the northern latitudes. The planned meteorological instrument for the PCW mission is a 21-channel spectral imager with UV, visible, NIR and MIR channels, similar to MODIS and ABI, capable of measuring several different trace gasses. This paper will focus on the development of an Imaging Fourier Transform Spectrometer (IFTS) to be flown on a high-altitude balloon to demonstrate the capacity to monitor methane and carbon dioxide in the Arctic as part of the PHEOS-WCA (Polar Highly Elliptical Orbit Science - Weather, Climate and Air quality) instrument suit; a science complement to the PCW mission. Funding through the CSA Flights for the Advancement of Science and Technology (FAST) program is in place to develop the demonstrator IFTS to show that measurements of methane and carbon dioxide can be collected from space in the 1.6 µm band. The characteristics of the instrument and plans for the balloon flight will be discussed and details of the PCW mission and PHEOS-WCA component will be presented. The authors acknowledge support of the PHEOS-WCA science team.

  20. Spatial-phase code-division multiple-access system with multiplexed Fourier holography switching for reconfigurable optical interconnection.

    PubMed

    Takasago, K; Takekawa, M; Shirakawa, A; Kannari, F

    2000-05-10

    A new, to our knowledge, space-variant optical interconnection system based on a spatial-phase code-division multiple-access technique with multiplexed Fourier holography is described. In this technique a signal beam is spread over wide spatial frequencies by an M-sequence pseudorandom phase code. At a receiver side a selected signal beam is properly decoded, and at the same time its spatial pattern is shaped with a Fourier hologram, which is recorded by light that is encoded with the same M-sequence phase mask as the desired signal beam and by light whose spatial beam pattern is shaped to a signal routing pattern. Using the multiplexed holography, we can simultaneously route multisignal flows into individually specified receiver elements. The routing pattern can also be varied by means of switching the encoding phase code or replacing the hologram. We demonstrated a proof-of-principle experiment with a doubly multiplexed hologram that enables simultaneous routing of two signal beams. Using a numerical model, we showed that the proposed scheme can manage more than 250 routing patterns for one signal flow with one multiplexed hologram at a signal-to-noise ratio of ~5.

  1. Reconstruction of color biomedical images by means of quaternion generic Jacobi-Fourier moments in the framework of polar pixels.

    PubMed

    Camacho-Bello, César; Padilla-Vivanco, Alfonso; Toxqui-Quitl, Carina; Báez-Rojas, José Javier

    2016-01-01

    A detailed analysis of the quaternion generic Jacobi-Fourier moments (QGJFMs) for color image description is presented. In order to reach numerical stability, a recursive approach is used during the computation of the generic Jacobi radial polynomials. Moreover, a search criterion is performed to establish the best values for the parameters [Formula: see text] and [Formula: see text] of the radial Jacobi polynomial families. Additionally, a polar pixel approach is taken into account to increase the numerical accuracy in the calculation of the QGJFMs. To prove the mathematical theory, some color images from optical microscopy and human retina are used. Experiments and results about color image reconstruction are presented. PMID:27014716

  2. Single-shot X-ray phase-contrast imaging using two-dimensional gratings

    SciTech Connect

    Sato, Genta; Itoh, Hidenosuke; Nagai, Kentaro; Nakamura, Takashi; Yamaguchi, Kimiaki; Kondoh, Takeshi; Handa, Soichiro; Ouchi, Chidane; Teshima, Takayuki; Setomoto, Yutaka; Den, Toru

    2012-07-31

    We developed a two-dimensional gratings-based X-ray interferometer that requires only a single exposure for clinical radiography. The interferometer consisted of a checkerboard phase grating for {pi} phase modulation and a latticed amplitude grating. Using a synchrotron radiation source, the phase grating modulates the X-rays and generates a self-image, transformed to a moire fringe by the amplitude grating. To allow use of a conventional X-ray tube, the latticed source grating was installed downstream from the X-ray tube. Differential phase-contrast and scattering images in two orthogonal directions were obtained by Fourier analysis of the single moire fringe image and an absorption image. Results show that characteristic features of soft tissue in two orthogonal directions were clearly shown in the differential phase-contrast images.

  3. Remote identification and quantification of industrial smokestack effluents via imaging Fourier-transform spectroscopy.

    PubMed

    Gross, Kevin C; Bradley, Kenneth C; Perram, Glen P

    2010-12-15

    Industrial smokestack plume emissions were remotely measured with a midwave infrared (1800-3000 cm(-1)) imaging Fourier-transform spectrometer operating at moderate spatial (128 × 64 with 19.4 × 19.4 cm(2) per pixel) and high spectral (0.25 cm(-1)) resolution over a 20 min period. Strong emissions from CO(2), H(2)O, SO(2), NO, HCl, and CO were observed. A single-layer plume radiative transfer model was used to estimate temperature T and effluent column densities q(i) for each pixel's spectrum immediately above the smokestack exit. Across the stack, temperature was uniform with T = 396.3 ± 1.3 K (mean ± stdev), and each q(i) varied in accordance with the plume path length defined by its cylindrical geometry. Estimated CO(2) and SO(2) volume fractions of 8.6 ± 0.4% and 380 ± 23 ppm(v), respectively, compared favorably with in situ measurements of 9.40 ± 0.03% and 383 ± 2 ppm(v). Total in situ NO(x) concentration (NO + NO(2)) was reported at 120 ± 1 ppm(v). While NO(2) was not spectrally detected, NO was remotely observed with a concentration of 104 ± 7 ppm(v). Concentration estimates for the unmonitored species CO, HCl, and H(2)O were 14.4 ± 0.3 ppm(v), 88 ± 1 ppm(v), and 4.7 ± 0.1%, respectively.

  4. Phase-shift detection in a Fourier-transform method for temperature sensing using a tapered fiber microknot resonator.

    PubMed

    Larocque, Hugo; Lu, Ping; Bao, Xiaoyi

    2016-04-01

    Phase-shift detection in a fast-Fourier-transform (FFT)-based spectrum analysis technique for temperature sensing using a tapered fiber microknot resonator is proposed and demonstrated. Multiple transmission peaks in the FFT spectrum of the device were identified as optical modes having completed different amounts of round trips within the ring structure. Temperature variation induced phase shifts for each set of peaks were characterized, and experimental results show that different peaks have distinct temperature sensitivities reaching values up to -0.542  rad/°C, which is about 10 times greater than that of a regular adiabatic taper Mach-Zehnder interferometer when using similar phase-tracking schemes. PMID:27192232

  5. High-speed all-optical pattern recognition of dispersive Fourier images through a photonic reservoir computing subsystem.

    PubMed

    Mesaritakis, Charis; Bogris, Adonis; Kapsalis, Alexandros; Syvridis, Dimitris

    2015-07-15

    In this Letter, we present and fully model a photonic scheme that allows the high-speed identification of images acquired through the dispersive Fourier technique. The proposed setup consists of a photonic reservoir-computing scheme that is based on the nonlinear response of randomly interconnected InGaAsP microring resonators. This approach allowed classification errors of 0.6%, whereas it alleviates the need for complex high-cost optoelectronic sampling and digital processing.

  6. A Synthetic Quadrature Phase Detector/Demodulator for Fourier Transform Transform Spectrometers

    NASA Technical Reports Server (NTRS)

    Campbell, Joel

    2008-01-01

    A method is developed to demodulate (velocity correct) Fourier transform spectrometer (FTS) data that is taken with an analog to digital converter that digitizes equally spaced in time. This method makes it possible to use simple low cost, high resolution audio digitizers to record high quality data without the need for an event timer or quadrature laser hardware, and makes it possible to use a metrology laser of any wavelength. The reduced parts count and simplicity implementation makes it an attractive alternative in space based applications when compared to previous methods such as the Brault algorithm.

  7. 5-A Fourier map of gramicidin A phased by deuterium-hydrogen solvent difference neutron diffraction

    SciTech Connect

    Koeppe, R.E. II; Schoenborn, B.P.

    1984-03-01

    Crystals of ion-free gramicidin A (P2/sub 1/2/sub 1/2/sub 1/: a = 24.61, b = 32.28, c = 32.52) have been investigated using neutron diffraction. A difference analysis of crystals soaked in ethanol/H/sub 2/O as opposed to ethanol-d/sub 6//D/sub 2/O has lead to single isomorphous replacement Fourier projections of the structure at 5-A resolution. The gramicidin dimer appears to be a 32-A-long cylinder oriented parallel to the c-axis in these crystals.

  8. Nonlinear ultrasonic phased array imaging.

    PubMed

    Potter, J N; Croxford, A J; Wilcox, P D

    2014-10-01

    This Letter reports a technique for the imaging of acoustic nonlinearity. By contrasting the energy of the diffuse field produced through the focusing of an ultrasonic array by delayed parallel element transmission with that produced by postprocessing of sequential transmission data, acoustic nonlinearity local to the focal point is measured. Spatially isolated wave distortion is inferred without requiring interrogation of the wave at the inspection point, thereby allowing nonlinear imaging through depth.

  9. Design and calibration of a digital Fourier holographic microscope for particle sizing via goniometry and optical scatter imaging in transmission.

    PubMed

    Rossi, Vincent M; Jacques, Steven L

    2016-06-13

    Goniometry and optical scatter imaging have been used for optical determination of particle size based upon optical scattering. Polystyrene microspheres in suspension serve as a standard for system validation purposes. The design and calibration of a digital Fourier holographic microscope (DFHM) are reported. Of crucial importance is the appropriate scaling of scattering angle space in the conjugate Fourier plane. A detailed description of this calibration process is described. Spatial filtering of the acquired digital hologram to use photons scattered within a restricted angular range produces an image. A pair of images, one using photons narrowly scattered within 8 - 15° (LNA), and one using photons broadly scattered within 8 - 39° (HNA), are produced. An image based on the ratio of these two images, OSIR = HNA/LNA, following Boustany et al. (2002), yields a 2D Optical Scatter Image (OSI) whose contrast is based on the angular dependence of photon scattering and is sensitive to the microsphere size, especially in the 0.5-1.0µm range. Goniometric results are also given for polystyrene microspheres in suspension as additional proof of principle for particle sizing via the DFHM. PMID:27410298

  10. Quantitative phase imaging using grating-based quadrature phase interferometer

    NASA Astrophysics Data System (ADS)

    Wu, Jigang; Yaqoob, Zahid; Heng, Xin; Cui, Xiquan; Yang, Changhuei

    2007-02-01

    In this paper, we report the use of holographic gratings, which act as the free-space equivalent of the 3x3 fiber-optic coupler, to perform full field phase imaging. By recording two harmonically-related gratings in the same holographic plate, we are able to obtain nontrivial phase shift between different output ports of the gratings-based Mach-Zehnder interferometer. The phase difference can be adjusted by changing the relative phase of the recording beams when recording the hologram. We have built a Mach-Zehnder interferometer using harmonically-related holographic gratings with 600 and 1200 lines/mm spacing. Two CCD cameras at the output ports of the gratings-based Mach-Zehnder interferometer are used to record the full-field quadrature interferograms, which are subsequently processed to reconstruct the phase image. The imaging system has ~12X magnification with ~420μmx315μm field-of-view. To demonstrate the capability of our system, we have successfully performed phase imaging of a pure phase object and a paramecium caudatum.

  11. FPGA-based multi-channel fluorescence lifetime analysis of Fourier multiplexed frequency-sweeping lifetime imaging.

    PubMed

    Zhao, Ming; Li, Yu; Peng, Leilei

    2014-09-22

    We report a fast non-iterative lifetime data analysis method for the Fourier multiplexed frequency-sweeping confocal FLIM (Fm-FLIM) system [Opt. Express 22, 10221 (2014)]. The new method, named R-method, allows fast multi-channel lifetime image analysis in the system's FPGA data processing board. Experimental tests proved that the performance of the R-method is equivalent to that of single-exponential iterative fitting, and its sensitivity is well suited for time-lapse FLIM-FRET imaging of live cells, for example cyclic adenosine monophosphate (cAMP) level imaging with GFP-Epac-mCherry sensors. With the R-method and its FPGA implementation, multi-channel lifetime images can now be generated in real time on the multi-channel frequency-sweeping FLIM system, and live readout of FRET sensors can be performed during time-lapse imaging.

  12. FPGA-based multi-channel fluorescence lifetime analysis of Fourier multiplexed frequency-sweeping lifetime imaging

    PubMed Central

    Zhao, Ming; Li, Yu; Peng, Leilei

    2014-01-01

    We report a fast non-iterative lifetime data analysis method for the Fourier multiplexed frequency-sweeping confocal FLIM (Fm-FLIM) system [ Opt. Express22, 10221 ( 2014)24921725]. The new method, named R-method, allows fast multi-channel lifetime image analysis in the system’s FPGA data processing board. Experimental tests proved that the performance of the R-method is equivalent to that of single-exponential iterative fitting, and its sensitivity is well suited for time-lapse FLIM-FRET imaging of live cells, for example cyclic adenosine monophosphate (cAMP) level imaging with GFP-Epac-mCherry sensors. With the R-method and its FPGA implementation, multi-channel lifetime images can now be generated in real time on the multi-channel frequency-sweeping FLIM system, and live readout of FRET sensors can be performed during time-lapse imaging. PMID:25321778

  13. Cardiovascular magnetic resonance phase contrast imaging.

    PubMed

    Nayak, Krishna S; Nielsen, Jon-Fredrik; Bernstein, Matt A; Markl, Michael; D Gatehouse, Peter; M Botnar, Rene; Saloner, David; Lorenz, Christine; Wen, Han; S Hu, Bob; Epstein, Frederick H; N Oshinski, John; Raman, Subha V

    2015-01-01

    Cardiovascular magnetic resonance (CMR) phase contrast imaging has undergone a wide range of changes with the development and availability of improved calibration procedures, visualization tools, and analysis methods. This article provides a comprehensive review of the current state-of-the-art in CMR phase contrast imaging methodology, clinical applications including summaries of past clinical performance, and emerging research and clinical applications that utilize today's latest technology. PMID:26254979

  14. From regular text to artistic writing and artworks: Fourier statistics of images with low and high aesthetic appeal

    PubMed Central

    Melmer, Tamara; Amirshahi, Seyed A.; Koch, Michael; Denzler, Joachim; Redies, Christoph

    2013-01-01

    The spatial characteristics of letters and their influence on readability and letter identification have been intensely studied during the last decades. There have been few studies, however, on statistical image properties that reflect more global aspects of text, for example properties that may relate to its aesthetic appeal. It has been shown that natural scenes and a large variety of visual artworks possess a scale-invariant Fourier power spectrum that falls off linearly with increasing frequency in log-log plots. We asked whether images of text share this property. As expected, the Fourier spectrum of images of regular typed or handwritten text is highly anisotropic, i.e., the spectral image properties in vertical, horizontal, and oblique orientations differ. Moreover, the spatial frequency spectra of text images are not scale-invariant in any direction. The decline is shallower in the low-frequency part of the spectrum for text than for aesthetic artworks, whereas, in the high-frequency part, it is steeper. These results indicate that, in general, images of regular text contain less global structure (low spatial frequencies) relative to fine detail (high spatial frequencies) than images of aesthetics artworks. Moreover, we studied images of text with artistic claim (ornate print and calligraphy) and ornamental art. For some measures, these images assume average values intermediate between regular text and aesthetic artworks. Finally, to answer the question of whether the statistical properties measured by us are universal amongst humans or are subject to intercultural differences, we compared images from three different cultural backgrounds (Western, East Asian, and Arabic). Results for different categories (regular text, aesthetic writing, ornamental art, and fine art) were similar across cultures. PMID:23554592

  15. From regular text to artistic writing and artworks: Fourier statistics of images with low and high aesthetic appeal.

    PubMed

    Melmer, Tamara; Amirshahi, Seyed A; Koch, Michael; Denzler, Joachim; Redies, Christoph

    2013-01-01

    The spatial characteristics of letters and their influence on readability and letter identification have been intensely studied during the last decades. There have been few studies, however, on statistical image properties that reflect more global aspects of text, for example properties that may relate to its aesthetic appeal. It has been shown that natural scenes and a large variety of visual artworks possess a scale-invariant Fourier power spectrum that falls off linearly with increasing frequency in log-log plots. We asked whether images of text share this property. As expected, the Fourier spectrum of images of regular typed or handwritten text is highly anisotropic, i.e., the spectral image properties in vertical, horizontal, and oblique orientations differ. Moreover, the spatial frequency spectra of text images are not scale-invariant in any direction. The decline is shallower in the low-frequency part of the spectrum for text than for aesthetic artworks, whereas, in the high-frequency part, it is steeper. These results indicate that, in general, images of regular text contain less global structure (low spatial frequencies) relative to fine detail (high spatial frequencies) than images of aesthetics artworks. Moreover, we studied images of text with artistic claim (ornate print and calligraphy) and ornamental art. For some measures, these images assume average values intermediate between regular text and aesthetic artworks. Finally, to answer the question of whether the statistical properties measured by us are universal amongst humans or are subject to intercultural differences, we compared images from three different cultural backgrounds (Western, East Asian, and Arabic). Results for different categories (regular text, aesthetic writing, ornamental art, and fine art) were similar across cultures. PMID:23554592

  16. From regular text to artistic writing and artworks: Fourier statistics of images with low and high aesthetic appeal.

    PubMed

    Melmer, Tamara; Amirshahi, Seyed A; Koch, Michael; Denzler, Joachim; Redies, Christoph

    2013-01-01

    The spatial characteristics of letters and their influence on readability and letter identification have been intensely studied during the last decades. There have been few studies, however, on statistical image properties that reflect more global aspects of text, for example properties that may relate to its aesthetic appeal. It has been shown that natural scenes and a large variety of visual artworks possess a scale-invariant Fourier power spectrum that falls off linearly with increasing frequency in log-log plots. We asked whether images of text share this property. As expected, the Fourier spectrum of images of regular typed or handwritten text is highly anisotropic, i.e., the spectral image properties in vertical, horizontal, and oblique orientations differ. Moreover, the spatial frequency spectra of text images are not scale-invariant in any direction. The decline is shallower in the low-frequency part of the spectrum for text than for aesthetic artworks, whereas, in the high-frequency part, it is steeper. These results indicate that, in general, images of regular text contain less global structure (low spatial frequencies) relative to fine detail (high spatial frequencies) than images of aesthetics artworks. Moreover, we studied images of text with artistic claim (ornate print and calligraphy) and ornamental art. For some measures, these images assume average values intermediate between regular text and aesthetic artworks. Finally, to answer the question of whether the statistical properties measured by us are universal amongst humans or are subject to intercultural differences, we compared images from three different cultural backgrounds (Western, East Asian, and Arabic). Results for different categories (regular text, aesthetic writing, ornamental art, and fine art) were similar across cultures.

  17. Quantitative phase imaging of living cells with a swept laser source

    NASA Astrophysics Data System (ADS)

    Chen, Shichao; Zhu, Yizheng

    2016-03-01

    Digital holographic phase microscopy is a well-established quantitative phase imaging technique. However, interference artifacts from inside the system, typically induced by elements whose optical thickness are within the source coherence length, limit the imaging quality as well as sensitivity. In this paper, a swept laser source based technique is presented. Spectra acquired at a number of wavelengths, after Fourier Transform, can be used to identify the sources of the interference artifacts. With proper tuning of the optical pathlength difference between sample and reference arms, it is possible to avoid these artifacts and achieve sensitivity below 0.3nm. Performance of the proposed technique is examined in live cell imaging.

  18. Solar Rotating Fourier Telescope

    NASA Technical Reports Server (NTRS)

    Campbell, Jonathan

    1994-01-01

    Proposed telescope based on absorbing Fourier-transform grids images full Sun at unprecedented resolution. Overcomes limitations of both conventional optical and pinhole cameras. Arrays of grids and detectors configured for sensitivity to selected fourier components of x-ray images.

  19. Phase contrast portal imaging using synchrotron radiation

    SciTech Connect

    Umetani, K.; Kondoh, T.

    2014-07-15

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  20. Phase contrast portal imaging using synchrotron radiation

    NASA Astrophysics Data System (ADS)

    Umetani, K.; Kondoh, T.

    2014-07-01

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  1. A Panchromatic Imaging Fourier Transform Spectrometer for the NASA Geostationary Coastal and Air Pollution Events Mission

    NASA Technical Reports Server (NTRS)

    Wu, Yen-Hung; Key, Richard; Sander, Stanley; Blavier, Jean-Francois; Rider, David

    2011-01-01

    This paper summarizes the design and development of the Panchromatic Imaging Fourier Transform Spectrometer (PanFTS) for the NASA Geostationary Coastal and Air Pollution Events (GEO-CAPE) Mission. The PanFTS instrument will advance the understanding of the global climate and atmospheric chemistry by measuring spectrally resolved outgoing thermal and reflected solar radiation. With continuous spectral coverage from the near-ultraviolet through the thermal infrared, this instrument is designed to measure pollutants, greenhouse gases, and aerosols as called for by the U.S. National Research Council Decadal Survey; Earth Science and Applications from Space: National Imperatives for the Next Decade and Beyond1. The PanFTS instrument is a hybrid instrument based on spectrometers like the Tropospheric Emissions Spectrometer (TES) that measures thermal emission, and those like the Orbiting Carbon Observatory (OCO), and the Ozone Monitoring Instrument (OMI) that measure scattered solar radiation. Simultaneous measurements over the broad spectral range from IR to UV is accomplished by a two sided interferometer with separate optical trains and detectors for the ultraviolet-visible and infrared spectral domains. This allows each side of the instrument to be independently optimized for its respective spectral domain. The overall interferometer design is compact because the two sides share a single high precision cryogenic optical path difference mechanism (OPDM) and metrology laser as well as a number of other instrument systems including the line-of-sight pointing mirror, the data management system, thermal control system, electrical system, and the mechanical structure. The PanFTS breadboard instrument has been tested in the laboratory and demonstrated the basic functionality for simultaneous measurements in the visible and infrared. It is set to begin operations in the field at the California Laboratory for Atmospheric Remote Sensing (CLARS) observatory on Mt. Wilson

  2. Quantitative Fourier transform infrared analysis of gas phase cigarette smoke and other gas mixtures

    SciTech Connect

    Cueto, R.; Church, D.F.; Pryor, W.A. )

    1989-03-01

    A new method for the analysis of selected components in complex gas mixtures has been developed utilizing a relatively inexpensive Fourier transform infrared spectrometer and a continuous flow gas cell. The method was used to monitor nitric oxide and nitrogen dioxide concentrations in cigarette smoke with time. Using multivariate least-square regression analysis, it is possible to simultaneously quantitate both NO and NO{sub 2}, even in the presence of overlapping peaks. Using this method, the oxidation of nitric oxide in the presence of isoprene in cigarette smoke and in a model system was followed with time. The method also can be applied to other compounds in smoke or to any other gaseous mixture.

  3. Security of image encryption scheme based on multi-parameter fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Zhao, Tieyu; Ran, Qiwen; Yuan, Lin; Chi, Yingying; Ma, Jing

    2016-10-01

    Recently, multi-parameter fractional Fourier transform (MPFRFT) has been widely applied in the optics cryptosystem, which has attracted more and more researchers' attention. However, in further study we find a serious security problem on the MPFRFT which is the multi-choice of decryption key corresponding to an encryption key. The existence of multi-decryption-key hinders the application of this algorithm. We present a new generalized fractional Fourier transform, which can overcome the problem and enlarge the key space. The simulation results show that the proposed algorithm has higher security and key sensitivity.

  4. Genetic Algorithm Phase Retrieval for the Systematic Image-Based Optical Alignment Testbed

    NASA Technical Reports Server (NTRS)

    Taylor, Jaime; Rakoczy, John; Steincamp, James

    2003-01-01

    Phase retrieval requires calculation of the real-valued phase of the pupil fimction from the image intensity distribution and characteristics of an optical system. Genetic 'algorithms were used to solve two one-dimensional phase retrieval problem. A GA successfully estimated the coefficients of a polynomial expansion of the phase when the number of coefficients was correctly specified. A GA also successfully estimated the multiple p h e s of a segmented optical system analogous to the seven-mirror Systematic Image-Based Optical Alignment (SIBOA) testbed located at NASA s Marshall Space Flight Center. The SIBOA testbed was developed to investigate phase retrieval techniques. Tiphilt and piston motions of the mirrors accomplish phase corrections. A constant phase over each mirror can be achieved by an independent tip/tilt correction: the phase Conection term can then be factored out of the Discrete Fourier Tranform (DFT), greatly reducing computations.

  5. Absorption-Mode Fourier Transform Mass Spectrometry: The Effects of Apodization and Phasing on Modified Protein Spectra

    NASA Astrophysics Data System (ADS)

    Qi, Yulin; Li, Huilin; Wills, Rebecca H.; Perez-Hurtado, Pilar; Yu, Xiang; Kilgour, David P. A.; Barrow, Mark P.; Lin, Cheng; O'Connor, Peter B.

    2013-06-01

    The method of phasing broadband Fourier transform ion cyclotron resonance (FT-ICR) spectra allows plotting the spectra in the absorption-mode; this new approach significantly improves the quality of the data at no extra cost. Herein, an internal calibration method for calculating the phase function has been developed and successfully applied to the top-down spectra of modified proteins, where the peak intensities vary by 100×. The result shows that the use of absorption-mode spectra allows more peaks to be discerned within the recorded data, and this can reveal much greater information about the protein and modifications under investigation. In addition, noise and harmonic peaks can be assigned immediately in the absorption-mode.

  6. Molecular Dynamics at Electrical- and Optical-Driven Phase Transitions: Time-Resolved Infrared Studies Using Fourier-Transform Spectrometers

    NASA Astrophysics Data System (ADS)

    Peterseim, Tobias; Dressel, Martin

    2016-06-01

    The time-dependent optical properties of molecular systems are investigated by step-scan Fourier-transform spectroscopy in order to explore the dynamics at phase transitions and molecular orientation in the milli- and microsecond range. The electrical switching of liquid crystals traced by vibrational spectroscopy reveals a rotation of the molecules with a relaxation time of 2 ms. The photo-induced neutral-ionic transition in TTF-CA takes place by a suppression of the dimerization in the ionic phase and creation of neutral domains. The time-dependent infrared spectra, employed to investigate the domain-wall dynamics, depend on temperature and laser pulse intensity; the relaxation of the spectra follows a stretched-exponential decay with relaxation times in the microsecond range strongly dependent on temperature and laser intensity. We present all details of the experimental setups and thoroughly discuss the technical challenges.

  7. Absorption-mode Fourier transform mass spectrometry: the effects of apodization and phasing on modified protein spectra.

    PubMed

    Qi, Yulin; Li, Huilin; Wills, Rebecca H; Perez-Hurtado, Pilar; Yu, Xiang; Kilgour, David P A; Barrow, Mark P; Lin, Cheng; O'Connor, Peter B

    2013-06-01

    The method of phasing broadband Fourier transform ion cyclotron resonance (FT-ICR) spectra allows plotting the spectra in the absorption-mode; this new approach significantly improves the quality of the data at no extra cost. Herein, an internal calibration method for calculating the phase function has been developed and successfully applied to the top-down spectra of modified proteins, where the peak intensities vary by 100×. The result shows that the use of absorption-mode spectra allows more peaks to be discerned within the recorded data, and this can reveal much greater information about the protein and modifications under investigation. In addition, noise and harmonic peaks can be assigned immediately in the absorption-mode.

  8. Fourier transform infrared assay of membrane lipids immobilized to silica: leaching and stability of immobilized artificial membrane-bonded phases.

    PubMed

    Markovich, R J; Stevens, J M; Pidgeon, C

    1989-11-01

    A nondestructive, sensitive assay to monitor the hydrocarbon content of silica-based chromatography particles has been developed. The assay requires a microscope accessory interfaced with a Fourier transform infrared (FTIR) spectrometer. For determining hydrocarbon content, undiluted alkyl-silica-bonded phases were pressed into a thin wafer. Hydrocarbon content was quantitated using the integrated hydrocarbon band intensity between 2995 and 2825 cm-1 [i.e., band area C-H] and the integrated silica oxide band intensity between 1945 and 1780 cm-1 [i.e., band area Si-O]. Plotting the [band area C-H]/[band area Si-O] ratio vs the carbon content determined by elemental analysis gave a correlation coefficient of r = 0.997. The FTIR assay was validated on 5-, 7-, and 12-microns silica particles using three different immobilized artificial membrane (IAM) silica-bonded phases. The utility of the FTIR assay in determining hydrocarbon content was demonstrated by evaluating hydrocarbon leaching from IAM phases exposed to mobile-phase solvents. The ability of organic solvents to leach hydrocarbon from IAM phases containing phosphatidylcholine (PC) as the immobilized ligand was chloroform greater than ethanol approximately methanol greater than ethyl acetate greater than methylene chloride greater than acetonitrile greater than acetone. Acetone and acetonitrile cause very little hydrocarbon leaching from HPLC-IAM.PC columns. When challenged with different mobile phases, IAM.PC columns perfused with mobile phase are more stable than IAM.PC-bonded phases stirred in mobile phases. IAM.PC contains lecithin linked to silica by amide bonds.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:2558589

  9. Spectral modulation interferometry for quantitative phase imaging

    PubMed Central

    Shang, Ruibo; Chen, Shichao; Li, Chengshuai; Zhu, Yizheng

    2015-01-01

    We propose a spectral-domain interferometric technique, termed spectral modulation interferometry (SMI), and present its application to high-sensitivity, high-speed, and speckle-free quantitative phase imaging. In SMI, one-dimensional complex field of an object is interferometrically modulated onto a broadband spectrum. Full-field phase and intensity images are obtained by scanning along the orthogonal direction. SMI integrates the high sensitivity of spectral-domain interferometry with the high speed of spectral modulation to quantify fast phase dynamics, and its dispersive and confocal nature eliminates laser speckles. The principle and implementation of SMI are discussed. Its performance is evaluated using static and dynamic objects. PMID:25780737

  10. Optical character recognition of camera-captured images based on phase features

    NASA Astrophysics Data System (ADS)

    Diaz-Escobar, Julia; Kober, Vitaly

    2015-09-01

    Nowadays most of digital information is obtained using mobile devices specially smartphones. In particular, it brings the opportunity for optical character recognition in camera-captured images. For this reason many recognition applications have been recently developed such as recognition of license plates, business cards, receipts and street signal; document classification, augmented reality, language translator and so on. Camera-captured images are usually affected by geometric distortions, nonuniform illumination, shadow, noise, which make difficult the recognition task with existing systems. It is well known that the Fourier phase contains a lot of important information regardless of the Fourier magnitude. So, in this work we propose a phase-based recognition system exploiting phase-congruency features for illumination/scale invariance. The performance of the proposed system is tested in terms of miss classifications and false alarms with the help of computer simulation.

  11. Multiple image encryption by phase retrieval

    NASA Astrophysics Data System (ADS)

    Di, Hong; Kang, Yanmei; Liu, Yueqin; Zhang, Xin

    2016-07-01

    Multiple image encryption (MIE) was proposed to increase the efficiency of encrypting images by processing several images simultaneously. Because of the advantage of optical technology in processing twodimensional images at high throughput, MIE has been significantly improved by use of methods originating from optics. Phase retrieval was the process of algorithmically finding solutions to the phase loss problem due to light detectors only capturing the intensity. It was to retrieve phase information for the determination of a structure from diffraction data. Error-reduction algorithm is a typical phase retrieval method. Here, we employ it to illustrate that methods in phase retrieval are able to encrypt multiple images and compress them into encrypted data simultaneously. Moreover, the decryption is also designed to handle multiple images at the same time. The whole process including both the encryption and decryption is proposed to improve MIE with respect to the compression and efficiency. The feasibility and encryption of the MIE scheme is demonstrated with encryption experiments under Gaussian white noise and unauthorized access.

  12. Synchronous Phase-Resolving Flash Range Imaging

    NASA Technical Reports Server (NTRS)

    Pain, Bedabrata; Hancock, Bruce

    2007-01-01

    An apparatus, now undergoing development, for range imaging based on measurement of the round-trip phase delay of a pulsed laser beam is described. The apparatus would operate in a staring mode. A pulsed laser would illuminate a target. Laser light reflected from the target would be imaged on a verylarge- scale integrated (VLSI)-circuit image detector, each pixel of which would contain a photodetector and a phase-measuring circuit. The round-trip travel time for the reflected laser light incident on each pixel, and thus the distance to the portion of the target imaged in that pixel, would be measured in terms of the phase difference between (1) the photodetector output pulse and (2) a local-oscillator signal that would have a frequency between 10 and 20 MHz and that would be synchronized with the laser-pulse-triggering signal.

  13. High-definition Fourier Transform Infrared (FT-IR) spectroscopic imaging of human tissue sections towards improving pathology.

    PubMed

    Sreedhar, Hari; Varma, Vishal K; Nguyen, Peter L; Davidson, Bennett; Akkina, Sanjeev; Guzman, Grace; Setty, Suman; Kajdacsy-Balla, Andre; Walsh, Michael J

    2015-01-01

    High-definition Fourier Transform Infrared (FT-IR) spectroscopic imaging is an emerging approach to obtain detailed images that have associated biochemical information. FT-IR imaging of tissue is based on the principle that different regions of the mid-infrared are absorbed by different chemical bonds (e.g., C=O, C-H, N-H) within cells or tissue that can then be related to the presence and composition of biomolecules (e.g., lipids, DNA, glycogen, protein, collagen). In an FT-IR image, every pixel within the image comprises an entire Infrared (IR) spectrum that can give information on the biochemical status of the cells that can then be exploited for cell-type or disease-type classification. In this paper, we show: how to obtain IR images from human tissues using an FT-IR system, how to modify existing instrumentation to allow for high-definition imaging capabilities, and how to visualize FT-IR images. We then present some applications of FT-IR for pathology using the liver and kidney as examples. FT-IR imaging holds exciting applications in providing a novel route to obtain biochemical information from cells and tissue in an entirely label-free non-perturbing route towards giving new insight into biomolecular changes as part of disease processes. Additionally, this biochemical information can potentially allow for objective and automated analysis of certain aspects of disease diagnosis.

  14. High-performance compression and double cryptography based on compressive ghost imaging with the fast Fourier transform

    NASA Astrophysics Data System (ADS)

    Leihong, Zhang; Zilan, Pan; Luying, Wu; Xiuhua, Ma

    2016-11-01

    To solve the problem that large images can hardly be retrieved for stringent hardware restrictions and the security level is low, a method based on compressive ghost imaging (CGI) with Fast Fourier Transform (FFT) is proposed, named FFT-CGI. Initially, the information is encrypted by the sender with FFT, and the FFT-coded image is encrypted by the system of CGI with a secret key. Then the receiver decrypts the image with the aid of compressive sensing (CS) and FFT. Simulation results are given to verify the feasibility, security, and compression of the proposed encryption scheme. The experiment suggests the method can improve the quality of large images compared with conventional ghost imaging and achieve the imaging for large-sized images, further the amount of data transmitted largely reduced because of the combination of compressive sensing and FFT, and improve the security level of ghost images through ciphertext-only attack (COA), chosen-plaintext attack (CPA), and noise attack. This technique can be immediately applied to encryption and data storage with the advantages of high security, fast transmission, and high quality of reconstructed information.

  15. Robust interferometric imaging via prior-less phase recovery: redundant spacing calibration with generalized closure phases

    NASA Astrophysics Data System (ADS)

    Kurien, Binoy G.; Ashcom, Jonathan B.; Shah, Vinay N.; Rachlin, Yaron; Tarokh, Vahid

    2016-09-01

    Atmospheric turbulence presents a fundamental challenge to Fourier phase recovery in optical interferometry. Typical reconstruction algorithms employ Bayesian inference techniques which rely on prior knowledge of the scene under observation. In contrast, Redundant Spacing Calibration (RSC) algorithms employ redundancy in the baselines of the interferometric array to directly expose the contribution of turbulence, thereby enabling phase recovery for targets of arbitrary and unknown complexity. Traditionally RSC algorithms have been applied directly to single-exposure measurements, which are reliable only at high photon flux in general. In scenarios of low photon flux, such as those arising in the observation of dim objects in space, one must instead rely on time-averaged, atmosphere-invariant quantities such as the bispectrum. In this paper, we develop a novel RSC-based algorithm for prior-less phase recovery in which we generalize the bispectrum to higher-order atmosphere-invariants (n-spectra) for improved sensitivity. We provide a strategy for selection of a high-SNR set of n-spectra using the graph-theoretic notion of the minimum cycle basis. We also discuss a key property of this set (wrap-invariance), which then enables reliable application of standard linear estimation techniques to recover the Fourier phases from the 2π-wrapped n-spectra phases. For validation, we analyze the expected shot-noise-limited performance of our algorithm for both pairwise and Fizeau interferometric architectures, and corroborate this analysis with simulation results showing performance near an atmosphere-oracle Cramer-Rao bound. Lastly, we apply techniques from the field of compressed sensing to perform image reconstruction from the estimated complex visibilities.

  16. Image Display and Manipulation System (IDAMS) program documentation, Appendixes A-D. [including routines, convolution filtering, image expansion, and fast Fourier transformation

    NASA Technical Reports Server (NTRS)

    Cecil, R. W.; White, R. A.; Szczur, M. R.

    1972-01-01

    The IDAMS Processor is a package of task routines and support software that performs convolution filtering, image expansion, fast Fourier transformation, and other operations on a digital image tape. A unique task control card for that program, together with any necessary parameter cards, selects each processing technique to be applied to the input image. A variable number of tasks can be selected for execution by including the proper task and parameter cards in the input deck. An executive maintains control of the run; it initiates execution of each task in turn and handles any necessary error processing.

  17. Quantitative x-ray phase imaging at the nanoscale by multilayer Laue lenses.

    PubMed

    Yan, Hanfei; Chu, Yong S; Maser, Jörg; Nazaretski, Evgeny; Kim, Jungdae; Kang, Hyon Chol; Lombardo, Jeffrey J; Chiu, Wilson K S

    2013-01-01

    For scanning x-ray microscopy, many attempts have been made to image the phase contrast based on a concept of the beam being deflected by a specimen, the so-called differential phase contrast imaging (DPC). Despite the successful demonstration in a number of representative cases at moderate spatial resolutions, these methods suffer from various limitations that preclude applications of DPC for ultra-high spatial resolution imaging, where the emerging wave field from the focusing optic tends to be significantly more complicated. In this work, we propose a highly robust and generic approach based on a Fourier-shift fitting process and demonstrate quantitative phase imaging of a solid oxide fuel cell (SOFC) anode by multilayer Laue lenses (MLLs). The high sensitivity of the phase to structural and compositional variations makes our technique extremely powerful in correlating the electrode performance with its buried nanoscale interfacial structures that may be invisible to the absorption and fluorescence contrasts.

  18. Microsolvation of reactive systems in the gas phase via Fourier transform microwave spectroscopy

    NASA Astrophysics Data System (ADS)

    Brauer, Carolyn Sue

    Fourier transform microwave spectroscopy has been used to study a number of reactive systems, with the primary goal of probing the effects of solvent on a molecule or a weakly bound acid-base system at the small cluster level. Because these systems are particularly sensitive to their first, nearest neighbors, the studies focus on examining structural changes and electronic rearrangement that occurs with the addition of a single solvent molecule, or microsolvent. The structural effects of microsolvation were examined on two prototypical acid-base systems. The first sought to ascertain the effect of microsolvent polarity by microsolvating HCN-SO3 with Ar and CO, forming the complexes HCN-SO3···Ar and HCN-SO 3···CO. Dipole moments and ab initio calculations also are reported. The second examined the effect of microsolvation on the primary hydrogen bond distance of (CH3)3N···HF, by adding a single HF molecule, forming the complex (CH3) 3N···HF···HF. The Stark effect was measured on a series of hydrogen halide complexes. These systems are prototypical complexes with which to study proton transfer across a hydrogen bond. The resulting dipole moments are discussed in terms of the degree of proton transfer. The dipole moment also was determined for the H2SO4···H 2O complex, which provides an important model system for understanding rates of binary homogeneous nucleation, and a series of ab initio calculations were performed in support of the results. Finally, the microwave spectrum of the radical complex OH-H2O was observed and analyzed using a two-state model which accounts for nuclear motion on the 2A' and 2A" potential surfaces. The results provide insights into the effects of the partial quenching of orbital angular momentum.

  19. Attenuated total reflection-Fourier transform infrared spectroscopic imaging of pharmaceuticals in microfluidic devices.

    PubMed

    Ewing, Andrew V; Clarke, Graham S; Kazarian, Sergei G

    2016-03-01

    The poor aqueous solubility of many active pharmaceutical ingredients presents challenges for effective drug delivery. In this study, the combination of attenuated total reflection (ATR)-FTIR spectroscopic imaging with specifically designed polydimethylsiloxane microfluidic devices to study drug release from pharmaceutical formulations has been developed. First, the high-throughput analysis of the dissolution of micro-formulations studied under flowing conditions has been introduced using a model formulation of ibuprofen and polyethylene glycol. The behaviour and release of the drug was monitored in situ under different pH conditions. In contrast to the neutral solution, where both the drug and excipient dissolved at a similar rate, structural change from the molecularly dispersed to a crystalline form of ibuprofen was characterised in the obtained spectroscopic images and the corresponding ATR-FTIR spectra for the experiments carried out in the acidic medium. Further investigations into the behaviour of the drug after its release from formulations (i.e., dissolved drug) were also undertaken. Different solutions of sodium ibuprofen dissolved in a neutral medium were studied upon contact with acidic conditions. The phase transition from a dissolved species of sodium ibuprofen to the formation of solid crystalline ibuprofen was revealed in the microfluidic channels. This innovative approach could offer a promising platform for high-throughput analysis of a range of micro-formulations, which are of current interest due to the advent of 3D printed pharmaceutical and microparticulate delivery systems. Furthermore, the ability to study dissolved drug in solution under flowing conditions can be useful for the studies of the diffusion of drugs into tissues or live cells. PMID:27158293

  20. Imaging the Ocular Anterior Segment With Real-Time, Full-Range Fourier-Domain Optical Coherence Tomography

    PubMed Central

    Sarunic, Marinko V.; Asrani, Sanjay; Izatt, Joseph A.

    2009-01-01

    We have demonstrated a novel Fourier-domain optical coherence tomography system and signal-processing algorithm for full-range, real-time, artifact-free quantitative imaging of the anterior chamber. Cross-sectional full-range images comprising 1024×800 pixels (axial×lateral) were acquired and displayed at 6.7 images/s. Volumetric data comprising 1024×400×60 pixels (axial×lateral×elevation) were acquired in 4.5 seconds with real-time visualization of individual slices and 3-dimensional reconstruction performed in postprocessing. Details of the cornea, limbus, iris, anterior lens capsule, trabecular meshwork, and Schlemm’s canal were visualized. Quantitative surface height maps of the corneal epithelium and endothelium were obtained from the volumetric data and used to generate corneal thickness maps. PMID:18413525

  1. Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra

    NASA Astrophysics Data System (ADS)

    Kleinert, A.; Friedl-Vallon, F.; Guggenmoser, T.; Höpfner, M.; Neubert, T.; Ribalda, R.; Sha, M. K.; Ungermann, J.; Blank, J.; Ebersoldt, A.; Kretschmer, E.; Latzko, T.; Oelhaf, H.; Olschewski, F.; Preusse, P.

    2014-03-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) is an imaging Fourier transform spectrometer that is capable of operating on various high altitude research aircraft. It measures the atmospheric emission in the thermal infrared spectral region in limb and nadir geometry. GLORIA consists of a classical Michelson interferometer combined with an infrared camera. The infrared detector has a usable range of 128 × 128 pixels, measuring up to 16 384 interferograms simultaneously. Imaging Fourier transform spectrometers impose a number of challenges with respect to instrument calibration and algorithm development. The innovative optical setup with extremely high optical throughput requires the development of new methods and algorithms for spectral and radiometric calibration. Due to the vast amount of data there is a high demand for scientifically intelligent optimisation of the data processing. This paper outlines the characterisation and processing steps required for the generation of radiometrically and spectrally calibrated spectra. Methods for performance optimisation of the processing algorithm are presented. The performance of the data processing and the quality of the calibrated spectra are demonstrated for measurements collected during the first deployments of GLORIA on aircraft.

  2. Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra

    NASA Astrophysics Data System (ADS)

    Kleinert, A.; Friedl-Vallon, F.; Guggenmoser, T.; Höpfner, M.; Neubert, T.; Ribalda, R.; Sha, M. K.; Ungermann, J.; Blank, J.; Ebersoldt, A.; Kretschmer, E.; Latzko, T.; Oelhaf, H.; Olschewski, F.; Preusse, P.

    2014-12-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) is an imaging Fourier transform spectrometer that is capable of operating on various high-altitude research aircraft. It measures the atmospheric emission in the thermal infrared spectral region in limb and nadir geometry. GLORIA consists of a classical Michelson interferometer combined with an infrared camera. The infrared detector has a usable area of 128 × 128 pixels, measuring up to 16 384 interferograms simultaneously. Imaging Fourier transform spectrometers impose a number of challenges with respect to instrument calibration and algorithm development. The optical setup with extremely high optical throughput requires the development of new methods and algorithms for spectral and radiometric calibration. Due to the vast amount of data there is a high demand for scientifically intelligent optimisation of the data processing. This paper outlines the characterisation and processing steps required for the generation of radiometrically and spectrally calibrated spectra. Methods for performance optimisation of the processing algorithm are presented. The performance of the data processing and the quality of the calibrated spectra are demonstrated for measurements collected during the first deployments of GLORIA on aircraft.

  3. Method of spectral subtraction of gas-phase Fourier transform infrared (FT-IR) spectra by minimizing the spectrum length.

    PubMed

    Kozlov, Denis; Besov, Alexey

    2011-08-01

    A new method of spectral subtraction for gas-phase Fourier transform infrared (FT-IR) spectra was developed for long-path gas measurements. The method is based on minimization of the length of the spectrum that results from subtracting the spectrum of an individual component of a gas mixture (water, CO(2), etc.) from the experimental spectrum of the mixture. For this purpose a subtraction coefficient (k(min)) is found for which the length of the resulting spectrum is minimized. A mathematical simulation with two Lorentzian absorption bands was conducted and the limits of application for the proposed method were determined. Two experimental examples demonstrate that a successful result could be achieved in the case when the subtrahend spectrum contains a number of narrow absorption bands (such as the spectrum of water vapor). PMID:21819781

  4. Image fusion algorithm for differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Roessl, Ewald; Koehler, Thomas; van Stevendaal, Udo; Martens, Gerhard; Hauser, Nik; Wang, Zhentian; Stampanoni, Marco

    2012-03-01

    Differential phase-contrast imaging in the x-ray domain provides three physically complementary signals:1, 2 the attenuation, the differential phase-contrast, related to the refractive index, and the dark-field signal, strongly influenced by the total amount of radiation scattered into very small angles. In medical applications, it is of the utmost importance to present to the radiologist all clinically relevant information in as compact a way as possible. Hence, the need arises for a method to combine two or more of the above mentioned signals into one image containing all information relevant for diagnosis. We present an image composition algorithm that fuses the attenuation image and the differential phase contrast image into a composite, final image based on the assumption that the real and imaginary part of the complex refractive index of the sample can be related by a constant scaling factor. The merging is performed in such a way that the composite image is characterized by minimal noise-power at each frequency component.

  5. Phase Imaging using Focusing Polycapillary Optics

    NASA Astrophysics Data System (ADS)

    Bashir, Sajid

    The interaction of X rays in diagnostic energy range with soft tissues can be described by Compton scattering and by the complex refractive index, which together characterize the attenuation properties of the tissue and the phase imparted to X rays passing through it. Many soft tissues exhibit extremely similar attenuation, so that their discrimination using conventional radiography, which generates contrast in an image through differential attenuation, is challenging. However, these tissues will impart phase differences significantly greater than attenuation differences to the X rays passing through them, so that phase-contrast imaging techniques can enable their discrimination. A major limitation to the widespread adoption of phase-contrast techniques is that phase contrast requires significant spatial coherence of the X-ray beam, which in turn requires specialized sources. For tabletop sources, this often requires a small (usually in the range of 10-50 micron) X-ray source. In this work, polycapillary optics were employed to create a small secondary source from a large spot rotating anode. Polycapillary optics consist of arrays of small hollow glass tubes through which X rays can be guided by total internal reflection from the tube walls. By tapering the tubes to guide the X rays to a point, they can be focused to a small spot which can be used as a secondary source. The polycapillary optic was first aligned with the X-ray source. The spot size was measured using a computed radiography image plate. Images were taken at a variety of optic-to-object and object-to-detector distances and phase-contrast edge enhancement was observed. Conventional absorption images were also acquired at a small object-to detector distances for comparison. Background division was performed to remove strong non-uniformity due to the optics. Differential phase contrast reconstruction demonstrates promising preliminary results. This manuscript is divided into six chapters. The second

  6. Evaluation of a new reconstruction algorithm for x-ray phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Seifert, Maria; Hauke, Christian; Horn, Florian; Lachner, Sebastian; Ludwig, Veronika; Pelzer, Georg; Rieger, Jens; Schuster, Max; Wandner, Johannes; Wolf, Andreas; Michel, Thilo; Anton, Gisela

    2016-04-01

    X-ray grating-based phase-contrast imaging might open up entirely new opportunities in medical imaging. However, transferring the interferometer technique from laboratory setups to conventional imaging systems the necessary rigidity of the system is difficult to achieve. Therefore, vibrations or distortions of the system lead to inaccuracies within the phase-stepping procedure. Given insufficient stability of the phase-step positions, up to now, artifacts in phase-contrast images occur, which lower the image quality. This is a problem with regard to the intended use of phase-contrast imaging in clinical routine as for example tiny structures of the human anatomy cannot be observed. In this contribution we evaluate an algorithm proposed by Vargas et.al.1 and applied to X-ray imaging by Pelzer et.al. that enables us to reconstruct a differential phase-contrast image without the knowledge of the specific phase-step positions. This method was tested in comparison to the standard reconstruction by Fourier analysis. The quality of phase-contrast images remains stable, even if the phase-step positions are completely unknown and not uniformly distributed. To also achieve attenuation and dark-field images the proposed algorithm has been combined with a further algorithm of Vargas et al.3 Using this algorithm, the phase-step positions can be reconstructed. With the help of the proper phase-step positions it is possible to get information about the phase, the amplitude and the offset of the measured data. We evaluated this algorithm concerning the measurement of thick objects which show a high absorbency.

  7. Ultrahigh-speed imaging of the rat retina using ultrahigh-resolution spectral/Fourier domain OCT

    NASA Astrophysics Data System (ADS)

    Liu, Jonathan J.; Potsaid, Benjamin; Chen, Yueli; Gorczynska, Iwona; Srinivasan, Vivek J.; Duker, Jay S.; Fujimoto, James G.

    2010-02-01

    We performed OCT imaging of the rat retina at 70,000 axial scans per second with ~3 μm axial resolution. Three-dimensional OCT (3D-OCT) data sets of the rat retina were acquired. The high speed and high density data sets enable improved en face visualization by reducing eye motion artifacts and improve Doppler OCT measurements. Minimal motion artifacts were visible and the OCT fundus images offer more precise registration of individual OCT images to retinal fundus features. Projection OCT fundus images show features such as the nerve fiber layer, retinal capillary networks and choroidal vasculature. Doppler OCT images and quantitative measurements show pulsatility in retinal blood vessels. Doppler OCT provides noninvasive in vivo quantitative measurements of retinal blood flow properties and may benefit studies of diseases such as glaucoma and diabetic retinopathy. Ultrahigh speed imaging using ultrahigh resolution spectral / Fourier domain OCT promises to enable novel protocols for measuring small animal retinal structure and retinal blood flow. This non-invasive imaging technology is a promising tool for monitoring disease progression in rat and mouse models to assess ocular disease pathogenesis and response to treatment.

  8. Simultaneous fluorescence and high-resolution bright-field imaging with aberration correction over a wide field-of-view with Fourier ptychographic microscopy (FPM) (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-03-01

    We present a method to acquire both fluorescence and high-resolution bright-field images with correction for the spatially varying aberrations over a microscope's wide field-of-view (FOV). First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff frequency of the microscope objective lens. At the same time, FPM algorithm is able to leverage on the redundancy within the set of acquired FPM bright-field images to estimate the microscope aberrations, which usually deteriorate in regions further away from the FOV's center. Second, the procedure acquires a raw wide-FOV fluorescence image within the same setup. Lack of moving parts allows us to use the FPM-estimated aberration map to computationally correct for the aberrations in the fluorescence image through deconvolution. Overlaying the aberration-corrected fluorescence image on top of the high-resolution bright-field image can be done with accurate spatial correspondence. This can provide means to identifying fluorescent regions of interest within the context of the sample's bright-field information. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of ~18.

  9. Phase retrieval from single frame projection fringe pattern with variational image decomposition

    NASA Astrophysics Data System (ADS)

    Zhu, Xinjun; Tang, Chen; Li, Biyuan; Sun, Chen; Wang, Linlin

    2014-08-01

    Phase retrieval from single frame projection fringe pattern is of fundamental importance, and is also a challenging problem in fringe projection measurement. In this paper, we present a new method for phase retrieval from a single frame projection fringe pattern based on variational image decomposition (VID) methods. We propose a new image decomposition model TV-G-Shearlet in order to effectively split a projection fringe pattern into background part, fringe part and noise part. The performance of the proposed approach is verified by simulated and real projection fringes as well as the comparison with the widely used and well-known Fourier transform method and wavelet transform method.

  10. Automated ambient desorption-ionization platform for surface imaging integrated with a commercial Fourier transform ion cyclotron resonance mass spectrometer.

    PubMed

    Pól, Jaroslav; Vidová, Veronika; Kruppa, Gary; Kobliha, Václav; Novák, Petr; Lemr, Karel; Kotiaho, Tapio; Kostiainen, Risto; Havlícek, Vladimír; Volný, Michael

    2009-10-15

    A fully automated atmospheric pressure ionization platform has been built and coupled with a commercial high-resolution Fourier transform ion cyclotron resonance mass spectrometer (FTICR-MS) instrument. The outstanding performance of this instrument allowed screening on the basis of exact masses in imaging mode. The main novel aspect was in the integration of the atmospheric pressure ionization imaging into the current software for matrix-assisted laser desorption ionization (MALDI) imaging, which allows the user of this commercial dual-source mass spectrometer to perform MALDI-MS and different ambient MS imaging from the same user interface and to utilize the same software tools. Desorption electrospray ionization (DESI) and desorption atmospheric pressure photoionization (DAPPI) were chosen to test the ambient surface imaging capabilities of this new ionization platform. Results of DESI imaging experiments performed on brain tissue sections are in agreement with previous MS imaging reports obtained by DESI imaging, but due to the high resolution and mass accuracy of the FTICR instrument it was possible to resolve several ions at the same nominal mass in the DESI-MS spectra of brain tissue. These isobaric interferences at low resolution are due to the overlap of ions from different lipid classes with different biological relevance. It was demonstrated that with the use of high-resolution MS fast imaging screening of lipids can be achieved without any preseparation steps. DAPPI, which is a relatively new and less developed ambient ionization technique compared to DESI, was used in imaging mode for the first time ever. It showed promise in imaging of phytocompounds from plant leaves, and selective ionization of a sterol lipid was achieved by DAPPI from a brain tissue sample.

  11. Quantitative analysis of forward and backward second-harmonic images of collagen fibers using Fourier transform second-harmonic-generation microscopy.

    PubMed

    Rao, Raghu Ambekar Ramachandra; Mehta, Monal R; Leithem, Scott; Toussaint, Kimani C

    2009-12-15

    Fourier transform second-harmonic generation (SHG) microscopy has been applied to quantitatively compare the information content between SHG images obtained from the forward and backward direction for three tissue types: porcine tendon, sclera, and ear cartilage. Both signal types yield consistent information on the preferred orientation of collagen fibers. For all specimens, the Fourier transform of the forward and backward SHG images produces several overlapping peaks in the magnitude spectrum at various depths into the tissues, indicating that some information present in the forward SHG images can be extracted from the backward SHG images. This study highlights the potential of backward SHG microscopy for medical diagnostics.

  12. High resolution quantitative phase imaging of live cells with constrained optimization approach

    NASA Astrophysics Data System (ADS)

    Pandiyan, Vimal Prabhu; Khare, Kedar; John, Renu

    2016-03-01

    Quantitative phase imaging (QPI) aims at studying weakly scattering and absorbing biological specimens with subwavelength accuracy without any external staining mechanisms. Use of a reference beam at an angle is one of the necessary criteria for recording of high resolution holograms in most of the interferometric methods used for quantitative phase imaging. The spatial separation of the dc and twin images is decided by the reference beam angle and Fourier-filtered reconstructed image will have a very poor resolution if hologram is recorded below a minimum reference angle condition. However, it is always inconvenient to have a large reference beam angle while performing high resolution microscopy of live cells and biological specimens with nanometric features. In this paper, we treat reconstruction of digital holographic microscopy images as a constrained optimization problem with smoothness constraint in order to recover only complex object field in hologram plane even with overlapping dc and twin image terms. We solve this optimization problem by gradient descent approach iteratively and the smoothness constraint is implemented by spatial averaging with appropriate size. This approach will give excellent high resolution image recovery compared to Fourier filtering while keeping a very small reference angle. We demonstrate this approach on digital holographic microscopy of live cells by recovering the quantitative phase of live cells from a hologram recorded with nearly zero reference angle.

  13. Imaging delocalized electron clouds: photoionization of C(60) in Fourier reciprocal space.

    PubMed

    Rüdel, Andy; Hentges, Rainer; Becker, Uwe; Chakraborty, Himadri S; Madjet, Mohamed E; Rost, Jan M

    2002-09-16

    The dynamics of the photoionization of the two outermost orbitals of C(60) has been studied in the oscillatory regime from threshold to the carbon K edge. We show that geometrical properties of the fullerene electronic hull, such as its diameter and thickness, are contained in the partial photoionization cross sections by examining ratios of partial cross sections as a function of the photon wave number in the Fourier conjugated space. Evaluated in this unconventional manner photoemission data reveal directly the desired spatial information.

  14. Concentration profiles of collagen and proteoglycan in articular cartilage by Fourier transform infrared imaging and principal component regression

    NASA Astrophysics Data System (ADS)

    Yin, Jianhua; Xia, Yang; Lu, Mei

    2012-03-01

    Fourier-transform infrared imaging (FT-IRI) technique with the principal component regression (PCR) method was used to quantitatively determine the 2D images and the depth-dependent concentration profiles of two principal macromolecular components (collagen and proteoglycan) in articular cartilage. Ten 6 μm thick sections of canine humeral cartilage were imaged at a pixel size of 6.25 μm in FT-IRI. The infrared spectra extracted from FT-IRI experiments were imported into a PCR program to calculate the quantitative distributions of both collagen and proteoglycan in dry cartilage, which were subsequently converted into the wet-weight based concentration profiles. The proteoglycan profiles by FT-IRI and PCR significantly correlated in linear regression with the proteoglycan profiles by the non-destructive μMRI (the goodness-of-fit 0.96 and the Pearson coefficient 0.98). Based on these concentration relationships, the concentration images of collagen and proteoglycan in both healthy and lesioned articular cartilage were successfully constructed two dimensionally. The simultaneous construction of both collagen and proteoglycan concentration images demonstrates that this combined imaging and chemometrics approach could be used as a sensitive tool to accurately resolve and visualize the concentration distributions of macromolecules in biological tissues.

  15. Phase and amplitude phase restoration in synthetic aperture radar imaging.

    PubMed

    Soumekh, M; Choi, J H

    1992-01-01

    Methods for addressing two types of multiplicative noise in synthetic aperture radar (SAR) imaging are presented. The authors consider a multiplicative noise with a real phase (i.e. the SAR signal's phase is contaminated but its amplitude is uncorrupted) that possesses unknown functional characteristics with respect to the radar signal's temporal frequencies. A perturbation solution for phase reconstruction from amplitude is developed from a wave equation governing the SAR signal and a Riccati equation that relates the amplitude and phase functions of the SAR signal. This solution is converted into a noniterative analytical solution in terms of the moments and powers of the log amplitude function. Next, the authors consider a multiplicative noise with a complex phase (i.e. both the amplitude and phase of the SAR signal are contaminated) that varies linearly with respect to the radar signal's temporal frequencies. The two wave equations governing the SAR signal at two temporal frequencies of the radar signal are combined to derive a method to reconstruct the complex phase error function.

  16. Digitizing Images for Curriculum 21: Phase II.

    ERIC Educational Resources Information Center

    Walker, Alice D.

    Although visual databases exist for the study of art, architecture, geography, health care, and other areas, readily accessible sources of quality images are not available for engineering faculty interested in developing multimedia modules or for student projects. Presented here is a brief review of Phase I of the Engineering Visual Database…

  17. Phased Contrast X-Ray Imaging

    ScienceCinema

    Erin Miller

    2016-07-12

    The Pacific Northwest National Laboratory is developing a range of technologies to broaden the field of explosives detection. Phased contrast X-ray imaging, which uses silicon gratings to detect distortions in the X-ray wave front, may be applicable to mail or luggage scanning for explosives; it can also be used in detecting other contraband, small-parts inspection, or materials characterization.

  18. Phase-Scrambler Plate Spreads Point Image

    NASA Technical Reports Server (NTRS)

    Edwards, Oliver J.; Arild, Tor

    1992-01-01

    Array of small prisms retrofit to imaging lens. Phase-scrambler plate essentially planar array of small prisms partitioning aperture of lens into many subapertures, and prism at each subaperture designed to divert relatively large diffraction spot formed by that subaperture to different, specific point on focal plane.

  19. Refractometry of melanocyte cell nuclei using optical scatter images recorded by digital Fourier microscopy

    NASA Astrophysics Data System (ADS)

    Seet, Katrina Y. T.; Nieminen, Timo A.; Zvyagin, Andrei V.

    2009-07-01

    The cell nucleus is the dominant optical scatterer in the cell. Neoplastic cells are characterized by cell nucleus polymorphism and polychromism-i.e., the nuclei exhibits an increase in the distribution of both size and refractive index. The relative size parameter, and its distribution, is proportional to the product of the nucleus size and its relative refractive index and is a useful discriminant between normal and abnormal (cancerous) cells. We demonstrate a recently introduced holographic technique, digital Fourier microscopy (DFM), to provide a sensitive measure of this relative size parameter. Fourier holograms were recorded and optical scatter of individual scatterers were extracted and modeled with Mie theory to determine the relative size parameter. The relative size parameter of individual melanocyte cell nuclei were found to be 16.5+/-0.2, which gives a cell nucleus refractive index of 1.38+/-0.01 and is in good agreement with previously reported data. The relative size parameters of individual malignant melanocyte cell nuclei are expected to be greater than 16.5.

  20. TH-E-17A-08: Estimation of Image Quality of 4-Dimensional Computed Tomography (4DCT) Via Fourier Analysis of Corresponding 1D Breathing Surrogate

    SciTech Connect

    Caraveo, M; McNamara, J; Rimner, A; Yorke, E; Li, G; Wei, J

    2014-06-15

    Purpose: Motion artifacts are common in patient 4DCT, leading to an illdefined tumor volume with variation up to 110% or setting up a poor foundation with low imaging fidelity for tumor motion study. We developed a method to estimate 4DCT image quality by establishing a correlation between the severity of motion artifacts in 4DCT images and the periodicity of corresponding 1D respiratory wave-function (1DRW) surrogate used for 4DCT reconstruction. Methods: Fast Fourier Transformation (FFT) was applied to analyze 1DRW periodicity, defined as the sum of the 5 largest Fourier coefficients, ranging in 0–1. Distortional motion artifacts of cine-scan 4DCT at the junctions of adjacent couchposition scans around the diaphragm were identified in 3 categories: incomplete, overlapping and duplicate. To quantify these artifacts, the discontinuity of the diaphragm at the junctions was measured in distance and averaged along 6 directions in 3 orthogonal views. Mean and sum artifacts per junction (APJ) across the entire diaphragm were calculated in each breathing phase. To make the APJ inter-patient comparable, patientspecific motion was removed from APJ by dividing patient-specific diaphragmatic velocity (displacement divided by the mean period, from FFT analysis of the 1DRW) and the normalized APJ was defined as motion artifact severity (MAS). Twenty-five patients with free-breathing 10-phase 4DCT and corresponding 1DRW surrogate datasets were studied. Results: A mild correlation of 0.56 was found between 1DRW periodicity and 4DCT artifact severity. Higher MAS tends to appear around mid inhalation and mid exhalation and the lowest MAS tends to be around full exhalation. The breathing periodicity of >0.8 possesses minimal motion artifacts. Conclusion: The 1D-4D correlation provides a fast means to estimate 4DCT image quality. Using 1DRW signal, we can retrospectively screen out high-quality 4DCT images for clinical research (periodicity>0.8) and prospectively identify poor

  1. Four-Point Analysis of Molecular Fluctuations in Sucrose Benzoate Near the Glass Transition by Fourier Imaging Correlation Spectroscopy

    NASA Astrophysics Data System (ADS)

    Utterback, James; Cook, Jasper; Marcus, Andrew

    2010-03-01

    Glass-forming liquids exhibit broad heterogeneous distributions of relaxations. It is of considerable importance to determine the detailed forms of these distributions in order to understand how fast and slow processes are partitioned, and how they couple over time. Such information is available through four-point correlation and distribution functions. We present initial fluorescence fluctuation measurements of probe molecule rotation and translation in the glass forming liquid sucrose benzoate. These measurements are performed using a unique method called polarization-modulated Fourier imaging correlation spectroscopy (PM-FICS), which can simultaneously measure molecular center-of-mass motions and optical anisotropy fluctuations. By combining PM-FICS with single-molecule imaging techniques, we construct two-dimensional spectral densities and joint distribution functions that establish temporal correlations of microscopic coordinates over successive time intervals.

  2. Phase correction algorithms for a snapshot hyperspectral imaging system

    NASA Astrophysics Data System (ADS)

    Chan, Victoria C.; Kudenov, Michael; Dereniak, Eustace

    2015-09-01

    We present image processing algorithms that improve spatial and spectral resolution on the Snapshot Hyperspectral Imaging Fourier Transform (SHIFT) spectrometer. Final measurements are stored in the form of threedimensional datacubes containing the scene's spatial and spectral information. We discuss calibration procedures, review post-processing methods, and present preliminary results from proof-of-concept experiments.

  3. Quantitative phase imaging with partially coherent illumination.

    PubMed

    Nguyen, T H; Edwards, C; Goddard, L L; Popescu, G

    2014-10-01

    In this Letter, we formulate a mathematical model for predicting experimental outcomes in quantitative phase imaging (QPI) when the illumination field is partially spatially coherent. We derive formulae that apply to QPI and discuss expected results for two classes of QPI experiments: common path and traditional interferometry, under varying degrees of spatial coherence. In particular, our results describe the physical relationship between the spatial coherence of the illuminating field and the halo effect, which is well known in phase-contrast microscopy. We performed experiments relevant to this common situation and found that our theory is in excellent agreement with the data. With this new understanding of the effects of spatial coherence, our formulae offer an avenue for removing halo artifacts from phase images. PMID:25360915

  4. Amplitude-phase retrieval attack free image encryption based on two random masks and interference

    NASA Astrophysics Data System (ADS)

    Liansheng, Sui; bei, Zhou; Zhanmin, Wang; qindong, Sun

    2016-11-01

    An amplitude-phase retrieval attack free encryption scheme is proposed by using two random masks, where one is considered as the random image and other as the public key. Initially, the random image is encrypted to two phase-only masks based on interference technique with the help of the public key. These two phase-only masks are real-valued functions and used as the encryption keys. Then, the plain image is encrypted to the ciphertext with the white noise distribution by using the phase-truncated Fourier-transform-based encoding scheme with the previous encryption keys. The encryption process is nonlinear in which no iterative calculation is involved, while the decryption process is linear which can be easily implemented with the 4 f optical system. Moreover, less constraints makes the specific attack unusable. Simulation results are given to verify the feasibility and robustness of the proposed encryption scheme.

  5. Cardiac Motion Tracking Using CINE Harmonic Phase (HARP) Magnetic Resonance Imaging

    PubMed Central

    Osman, Nael F.; Kerwin, William S.; McVeigh, Elliot R.; Prince, Jerry L.

    2007-01-01

    This article introduces a new image processing technique for rapid analysis of tagged cardiac magnetic resonance image sequences. The method uses isolated spectral peaks in SPAMM-tagged magnetic resonance images, which contain information about cardiac motion. The inverse Fourier transform of a spectral peak is a complex image whose calculated angle is called a harmonic phase (HARP) image. It is shown how two HARP image sequences can be used to automatically and accurately track material points through time. A rapid, semiautomated procedure to calculate circumferential and radial Lagrangian strain from tracked points is described. This new computational approach permits rapid analysis and visualization of myocardial strain within 5-10 min after the scan is complete. Its performance is demonstrated on MR image sequences reflecting both normal and abnormal cardiac motion. Results from the new method are shown to compare very well with a previously validated tracking algorithm. PMID:10571926

  6. Optical imaging through dynamic turbid media using the Fourier-domain shower-curtain effect

    PubMed Central

    Edrei, Eitan; Scarcelli, Giuliano

    2016-01-01

    Several phenomena have been recently exploited to circumvent scattering and have succeeded in imaging or focusing light through turbid layers. However, the requirement for the turbid medium to be steady during the imaging process remains a fundamental limitation of these methods. Here we introduce an optical imaging modality that overcomes this challenge by taking advantage of the so-called shower-curtain effect, adapted to the spatial-frequency domain via speckle correlography. We present high resolution imaging of objects hidden behind millimeter-thick tissue or dense lens cataracts. We demonstrate our imaging technique to be insensitive to rapid medium movements (> 5 m/s) beyond any biologically-relevant motion. Furthermore, we show this method can be extended to several contrast mechanisms and imaging configurations. PMID:27347498

  7. Writing trace identification using ultraviolet Fourier-transform imaging spectroscopy technique

    NASA Astrophysics Data System (ADS)

    Lyu, Hang; Liao, Ningfang; Wu, Wenmin; Li, Yasheng; Cao, Bin

    2015-08-01

    Conventional identification methods of writing traces commonly utilize imaging or spectroscopic techniques which work in visible to near infrared range or short-wave infrared range. Yet they cannot be applied in identifying the erased writing traces. In this study, we perform a research in identification of erased writing traces applying an ultraviolet Fouriertransform imaging spectrometer. Experiments of classifying the reflected ultraviolet spectra of erasable pens are made. The resulting hyperspectral images demonstrate that the erased writing traces on printing paper can be clearly identified by this ultraviolet imaging spectrometer.

  8. Fourier transform ion cyclotron resonance mass spectrometric study of gas-phase ion-molecule reactions

    SciTech Connect

    Yin, Winnie Weixin.

    1993-01-01

    Gas-phase ion-molecule reactions of rare earth (include Sc, Y, and all the lanthanide series) metal ion (except Pm[sup +]) reactions with benzene and alkyl benzene ligands were systematically studied by FT/ICR mass spectrometry. An electronic configuration d[sup 1]s[sup 1] was found to be necessary for the ions to insert into C-C and/or C-H bonds of alkyl groups of the ligands. When the promotion energy for the transition groups of the ligands. When the promotion energy for the transition f[sup n]s[sup 1] [yields] f[sup n[minus]1]d[sup 1]s[sup 1] was large, no reaction resulting from activation was observed. Some of the rare earth metal ions do not activate C-C or C-H bond of saturated hydrocarbons, but are rather reactive with alkyl groups of aromatic ligands. Most of the rare earth ions only from intact complex ions with benzene, while Sc[sup +], Y[sup +], La[sup +] and Ce[sup +] form metal-benzyne ions. Rare earth metal ions are quite oxophilic and readily react with background oxygen containing species when the reactions with organic ligand(s). A hyperbolic ion trap for ET/ICR mass spectrometry was evaluated experimentally and compared with the most commonly used cubic ion trap. The hyperbolic trap offers several advantages over the cubic ion trap. The hyperbolic trap offers several advantages over the cubic trap: improved mass resolving power, improved mass accuracy for wide-range mass spectra, and elimination of frequency shift due to different ion cyclotron radius. But z-ejection is more pronounced in the hyperbolic than in the cubic trap.

  9. Sub-Nyquist Sampling and Fourier Domain Beamforming in Volumetric Ultrasound Imaging.

    PubMed

    Burshtein, Amir; Birk, Michael; Chernyakova, Tanya; Eilam, Alon; Kempinski, Arcady; Eldar, Yonina C

    2016-05-01

    A key step in ultrasound image formation is digital beamforming of signals sampled by several transducer elements placed upon an array. High-resolution digital beamforming introduces the demand for sampling rates significantly higher than the signals' Nyquist rate, which greatly increases the volume of data that must be transmitted from the system's front end. In 3-D ultrasound imaging, 2-D transducer arrays rather than 1-D arrays are used, and more scan lines are needed. This implies that the amount of sampled data is vastly increased with respect to 2-D imaging. In this work, we show that a considerable reduction in data rate can be achieved by applying the ideas of Xampling and frequency domain beamforming (FDBF), leading to a sub-Nyquist sampling rate, which uses only a portion of the bandwidth of the ultrasound signals to reconstruct the image. We extend previous work on FDBF for 2-D ultrasound imaging to accommodate the geometry imposed by volumetric scanning and a 2-D grid of transducer elements. High image quality from low-rate samples is demonstrated by simulation of a phantom image composed of several small reflectors. Our technique is then applied to raw data of a heart ventricle phantom obtained by a commercial 3-D ultrasound system. We show that by performing 3-D beamforming in the frequency domain, sub-Nyquist sampling and low processing rate are achievable, while maintaining adequate image quality.

  10. A Simulated Method Of Image Reconstruction By Projection In Fourier Domain

    NASA Astrophysics Data System (ADS)

    Ma, Ming-gang

    1984-12-01

    In general image processing and pattern recognition laboratory, CT machine is not available. So we use simulated method to research image reconstruction algorithm and develop the application software. A Fortran application software is completed. The result is quite satisfied but bring with some errors.

  11. Cardiac phase detection in intravascular ultrasound images

    NASA Astrophysics Data System (ADS)

    Matsumoto, Monica M. S.; Lemos, Pedro Alves; Yoneyama, Takashi; Furuie, Sergio Shiguemi

    2008-03-01

    Image gating is related to image modalities that involve quasi-periodic moving organs. Therefore, during intravascular ultrasound (IVUS) examination, there is cardiac movement interference. In this paper, we aim to obtain IVUS gated images based on the images themselves. This would allow the reconstruction of 3D coronaries with temporal accuracy for any cardiac phase, which is an advantage over the ECG-gated acquisition that shows a single one. It is also important for retrospective studies, as in existing IVUS databases there are no additional reference signals (ECG). From the images, we calculated signals based on average intensity (AI), and, from consecutive frames, average intensity difference (AID), cross-correlation coefficient (CC) and mutual information (MI). The process includes a wavelet-based filter step and ascendant zero-cross detection in order to obtain the phase information. Firstly, we tested 90 simulated sequences with 1025 frames each. Our method was able to achieve more than 95.0% of true positives and less than 2.3% of false positives ratio, for all signals. Afterwards, we tested in a real examination, with 897 frames and ECG as gold-standard. We achieved 97.4% of true positives (CC and MI), and 2.5% of false positives. For future works, methodology should be tested in wider range of IVUS examinations.

  12. [Research of dual-photoelastic-modulator-based beat frequency modulation and Fourier-Bessel transform imaging spectrometer].

    PubMed

    Wang, Zhi-Bin; Zhang, Rui; Wang, Yao-Li; Huang, Yan-Fei; Chen, You-Hua; Wang, Li-Fu; Yang, Qiang

    2014-02-01

    As the existing photoelastic-modulator(PEM) modulating frequency in the tens of kHz to hundreds of kHz between, leading to frequency of modulated interference signal is higher, so ordinary array detector cannot effectively caprure interference signal..A new beat frequency modulation method based on dual-photoelastic-modulator (Dual-PEM) and Fourier-Bessel transform is proposed as an key component of dual-photoelastic-modulator-based imaging spectrometer (Dual-PEM-IS) combined with charge coupled device (CCD). The dual-PEM are operated as an electro-optic circular retardance modulator, Operating the PEMs at slightly different resonant frequencies w1 and w2 respectively, generates a differential signal at a much lower heterodyne frequency that modulates the incident light. This method not only retains the advantages of the existing PEM, but also the frequency of modulated photocurrent decreased by 2-3 orders of magnitude (10-500 Hz) and can be detected by common array detector, and the incident light spectra can be obtained by Fourier-Bessel transform of low frequency component in the modulated signal. The method makes the PEM has the dual capability of imaging and spectral measurement. The basic principle is introduced, the basic equations is derived, and the feasibility is verified through the corresponding numerical simulation and experiment. This method has' potential applications in imaging spectrometer technology, and analysis of the effect of deviation of the optical path difference. This work provides the necessary theoretical basis for remote sensing of new Dual-PEM-IS and for engineering implementation of spectra inversion.

  13. Quantitative Fourier Domain Optical Coherence Tomography Imaging of the Ocular Anterior Segment

    NASA Astrophysics Data System (ADS)

    McNabb, Ryan Palmer

    Clinical imaging within ophthalmology has had transformative effects on ocular health over the last century. Imaging has guided clinicians in their pharmaceutical and surgical treatments of macular degeneration, glaucoma, cataracts and numerous other pathologies. Many of the imaging techniques currently used are photography based and are limited to imaging the surface of ocular structures. This limitation forces clinicians to make assumptions about the underlying tissue which may reduce the efficacy of their diagnoses. Optical coherence tomography (OCT) is a non-invasive, non-ionizing imaging modality that has been widely adopted within the field of ophthalmology in the last 15 years. As an optical imaging technique, OCT utilizes low-coherence interferometry to produce micron-scale three-dimensional datasets of a tissue's structure. Much of the human body consists of tissues that significantly scatter and attenuate optical signals limiting the imaging depth of OCT in those tissues to only 1-2mm. However, the ocular anterior segment is unique among human tissue in that it is primarily transparent or translucent. This allows for relatively deep imaging of tissue structure with OCT and is no longer limited by the optical scattering properties of the tissue. This goal of this work is to develop methods utilizing OCT that offer the potential to reduce the assumptions made by clinicians in their evaluations of their patients' ocular anterior segments. We achieved this by first developing a method to reduce the effects of patient motion during OCT volume acquisitions allowing for accurate, three dimensional measurements of corneal shape. Having accurate corneal shape measurements then allowed us to determine corneal spherical and astigmatic refractive contribution in a given individual. This was then validated in a clinical study that showed OCT better measured refractive change due to surgery than other clinical devices. Additionally, a method was developed to combine

  14. Analysis of hyper-spectral data derived from an imaging Fourier transform: A statistical perspective

    SciTech Connect

    Sengupta, S.K.; Clark, G.A.; Fields, D.J.

    1996-01-10

    Fourier transform spectrometers (FTS) using optical sensors are increasingly being used in various branches of science. Typically, a FTS generates a three-dimensional data cube with two spatial dimensions and one frequency/wavelength dimension. The number of frequency dimensions in such data cubes is generally very large, often in the hundreds, making data analytical procedures extremely complex. In the present report, the problem is viewed from a statistical perspective. A set of procedures based on the high degree of inter-channel correlation structure often present in such hyper-spectral data, has been identified and applied to an example data set of dimension 100 x 128 x 128 comprising 128 spectral bands. It is shown that in this case, the special eigen-structure of the correlation matrix has allowed the authors to extract just a few linear combinations of the channels (the significant principal vectors) that effectively contain almost all of the spectral information contained in the data set analyzed. This in turn, enables them to segment the objects in the given spatial frame using, in a parsimonious yet highly effective way, most of the information contained in the data set.

  15. Ruthenium trisbipyridine as a candidate for gas-phase spectroscopic studies in a Fourier transform mass spectrometer

    DOE PAGES

    Scott, Jill R.; Ham, Jason E.; Durham, Bill; Tremblay, Paul L.

    2004-01-01

    Metal polypyridines are excellent candidates for gas-phase optical experiments where their intrinsic properties can be studied without complications due to the presence of solvent. The fluorescence lifetimes of [Ru(bpy) 3 ] 1+ trapped in an optical detection cell within a Fourier transform mass spectrometer were obtained using matrix-assisted laser desorption/ionization to generate the ions with either 2,5-dihydroxybenzoic acid (DHB) or sinapinic acid (SA) as matrix. All transients acquired, whether using DHB or SA for ion generation, were best described as approximately exponential decays. The rate constant for transients derived using DHB as matrix was 4×10 7 s −1 ,more » while the rate constant using SA was 1×10 7 s −1 . Some suggestions of multiple exponential decay were evident although limited by the quality of the signals. Photodissociation experiments revealed that [Ru(bpy) 3 ] 1+ generated using DHB can decompose to [Ru(bpy) 2 ] 1+ , whereas ions generated using SA showed no decomposition. Comparison of the mass spectra with the fluorescence lifetimes illustrates the promise of incorporating optical detection with trapped ion mass spectrometry techniques.« less

  16. Demonstration of Imaging Fourier Transform Spectrometer (FTS) Performance for Planetary and Geostationary Earth Observing

    NASA Technical Reports Server (NTRS)

    Revercomb, Henry E.; Sromovsky, Lawrence A.; Fry, Patrick M.; Best, Fred A.; LaPorte, Daniel D.

    2001-01-01

    The combination of massively parallel spatial sampling and accurate spectral radiometry offered by imaging FTS makes it extremely attractive for earth and planetary remote sensing. We constructed a breadboard instrument to help assess the potential for planetary applications of small imaging FTS instruments in the 1 - 5 micrometer range. The results also support definition of the NASA Geostationary Imaging FTS (GIFTS) instrument that will make key meteorological and climate observations from geostationary earth orbit. The Planetary Imaging FTS (PIFTS) breadboard is based on a custom miniaturized Bomen interferometer that uses corner cube reflectors, a wishbone pivoting voice-coil delay scan mechanism, and a laser diode metrology system. The interferometer optical output is measured by a commercial infrared camera procured from Santa Barbara Focalplane. It uses an InSb 128x128 detector array that covers the entire FOV of the instrument when coupled with a 25 mm focal length commercial camera lens. With appropriate lenses and cold filters the instrument can be used from the visible to 5 micrometers. The delay scan is continuous, but slow, covering the maximum range of +/- 0.4 cm in 37.56 sec at a rate of 500 image frames per second. Image exposures are timed to be centered around predicted zero crossings. The design allows for prediction algorithms that account for the most recent fringe rate so that timing jitter produced by scan speed variations can be minimized. Response to a fixed source is linear with exposure time nearly to the point of saturation. Linearity with respect to input variations was demonstrated to within 0.16% using a 3-point blackbody calibration. Imaging of external complex scenes was carried out at low and high spectral resolution. These require full complex calibration to remove background contributions that vary dramatically over the instrument FOV. Testing is continuing to demonstrate the precise radiometric accuracy and noise characteristics.

  17. Discrimination of healthy and osteoarthritic articular cartilages by Fourier transform infrared imaging and partial least squares-discriminant analysis

    NASA Astrophysics Data System (ADS)

    Zhang, Xue-Xi; Yin, Jian-Hua; Mao, Zhi-Hua; Xia, Yang

    2015-06-01

    Fourier transform infrared imaging (FTIRI) combined with chemometrics algorithm has strong potential to obtain complex chemical information from biology tissues. FTIRI and partial least squares-discriminant analysis (PLS-DA) were used to differentiate healthy and osteoarthritic (OA) cartilages for the first time. A PLS model was built on the calibration matrix of spectra that was randomly selected from the FTIRI spectral datasets of healthy and lesioned cartilage. Leave-one-out cross-validation was performed in the PLS model, and the fitting coefficient between actual and predicted categorical values of the calibration matrix reached 0.95. In the calibration and prediction matrices, the successful identifying percentages of healthy and lesioned cartilage spectra were 100% and 90.24%, respectively. These results demonstrated that FTIRI combined with PLS-DA could provide a promising approach for the categorical identification of healthy and OA cartilage specimens.

  18. Proteoglycan concentrations in healthy and diseased articular cartilage by Fourier transform infrared imaging and principal component regression

    NASA Astrophysics Data System (ADS)

    Yin, Jianhua; Xia, Yang

    2014-12-01

    Fourier transform infrared imaging (FTIRI) combining with principal component regression (PCR) analysis were used to determine the reduction of proteoglycan (PG) in articular cartilage after the transection of the anterior cruciate ligament (ACL). A number of canine knee cartilage sections were harvested from the meniscus-covered and meniscus-uncovered medial tibial locations from the control joints, the ACL joints at three time points after the surgery, and their contralateral joints. The PG loss in the ACL cartilage was related positively to the durations after the surgery. The PG loss in the contralateral knees was less than that of the ACL knees. The PG loss in the meniscus-covered cartilage was less than that of the meniscus-uncovered tissue in both ACL and contralateral knees. The quantitative mapping of PG loss could monitor the disease progression and repair processes in arthritis.

  19. A general theory of interference fringes in x-ray phase grating imaging

    SciTech Connect

    Yan, Aimin; Wu, Xizeng E-mail: liu@ou.edu; Liu, Hong E-mail: liu@ou.edu

    2015-06-15

    Purpose: The authors note that the concept of the Talbot self-image distance in x-ray phase grating interferometry is indeed not well defined for polychromatic x-rays, because both the grating phase shift and the fractional Talbot distances are all x-ray wavelength-dependent. For x-ray interferometry optimization, there is a need for a quantitative theory that is able to predict if a good intensity modulation is attainable at a given grating-to-detector distance. In this work, the authors set out to meet this need. Methods: In order to apply Fourier analysis directly to the intensity fringe patterns of two-dimensional and one-dimensional phase grating interferometers, the authors start their derivation from a general phase space theory of x-ray phase-contrast imaging. Unlike previous Fourier analyses, the authors evolved the Wigner distribution to obtain closed-form expressions of the Fourier coefficients of the intensity fringes for any grating-to-detector distance, even if it is not a fractional Talbot distance. Results: The developed theory determines the visibility of any diffraction order as a function of the grating-to-detector distance, the phase shift of the grating, and the x-ray spectrum. The authors demonstrate that the visibilities of diffraction orders can serve as the indicators of the underlying interference intensity modulation. Applying the theory to the conventional and inverse geometry configurations of single-grating interferometers, the authors demonstrated that the proposed theory provides a quantitative tool for the grating interferometer optimization with or without the Talbot-distance constraints. Conclusions: In this work, the authors developed a novel theory of the interference intensity fringes in phase grating x-ray interferometry. This theory provides a quantitative tool in design optimization of phase grating x-ray interferometers.

  20. In Vivo 3D Meibography of the Human Eyelid Using Real Time Imaging Fourier-Domain OCT

    PubMed Central

    Hwang, Ho Sik; Shin, Jun Geun; Lee, Byeong Ha; Eom, Tae Joong; Joo, Choun-Ki

    2013-01-01

    Recently, we reported obtaining tomograms of meibomian glands from healthy volunteers using commercial anterior segment optical coherence tomography (AS-OCT), which is widely employed in clinics for examination of the anterior segment. However, we could not create 3D images of the meibomian glands, because the commercial OCT does not have a 3D reconstruction function. In this study we report the creation of 3D images of the meibomian glands by reconstructing the tomograms of these glands using high speed Fourier-Domain OCT (FD-OCT) developed in our laboratory. This research was jointly undertaken at the Department of Ophthalmology, Seoul St. Mary's Hospital (Seoul, Korea) and the Advanced Photonics Research Institute of Gwangju Institute of Science and Technology (Gwangju, Korea) with two healthy volunteers and seven patients with meibomian gland dysfunction. A real time imaging FD-OCT system based on a high-speed wavelength swept laser was developed that had a spectral bandwidth of 100 nm at the 1310 nm center wavelength. The axial resolution was 5 µm and the lateral resolution was 13 µm in air. Using this device, the meibomian glands of nine subjects were examined. A series of tomograms from the upper eyelid measuring 5 mm (from left to right, B-scan) × 2 mm (from upper part to lower part, C-scan) were collected. Three-D images of the meibomian glands were then reconstructed using 3D “data visualization, analysis, and modeling software”. Established infrared meibography was also performed for comparison. The 3D images of healthy subjects clearly showed the meibomian glands, which looked similar to bunches of grapes. These results were consistent with previous infrared meibography results. The meibomian glands were parallel to each other, and the saccular acini were clearly visible. Here we report the successful production of 3D images of human meibomian glands by reconstructing tomograms of these glands with high speed FD-OCT. PMID:23805297

  1. In Vivo 3D Meibography of the Human Eyelid Using Real Time Imaging Fourier-Domain OCT.

    PubMed

    Hwang, Ho Sik; Shin, Jun Geun; Lee, Byeong Ha; Eom, Tae Joong; Joo, Choun-Ki

    2013-01-01

    Recently, we reported obtaining tomograms of meibomian glands from healthy volunteers using commercial anterior segment optical coherence tomography (AS-OCT), which is widely employed in clinics for examination of the anterior segment. However, we could not create 3D images of the meibomian glands, because the commercial OCT does not have a 3D reconstruction function. In this study we report the creation of 3D images of the meibomian glands by reconstructing the tomograms of these glands using high speed Fourier-Domain OCT (FD-OCT) developed in our laboratory. This research was jointly undertaken at the Department of Ophthalmology, Seoul St. Mary's Hospital (Seoul, Korea) and the Advanced Photonics Research Institute of Gwangju Institute of Science and Technology (Gwangju, Korea) with two healthy volunteers and seven patients with meibomian gland dysfunction. A real time imaging FD-OCT system based on a high-speed wavelength swept laser was developed that had a spectral bandwidth of 100 nm at the 1310 nm center wavelength. The axial resolution was 5 µm and the lateral resolution was 13 µm in air. Using this device, the meibomian glands of nine subjects were examined. A series of tomograms from the upper eyelid measuring 5 mm (from left to right, B-scan) × 2 mm (from upper part to lower part, C-scan) were collected. Three-D images of the meibomian glands were then reconstructed using 3D "data visualization, analysis, and modeling software". Established infrared meibography was also performed for comparison. The 3D images of healthy subjects clearly showed the meibomian glands, which looked similar to bunches of grapes. These results were consistent with previous infrared meibography results. The meibomian glands were parallel to each other, and the saccular acini were clearly visible. Here we report the successful production of 3D images of human meibomian glands by reconstructing tomograms of these glands with high speed FD-OCT.

  2. Swept source quantitative phase imaging (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Zhu, Yizheng; Chen, Shichao

    2016-03-01

    Holographic phase microscopy has seen rapid growth in the past two decades. Numerous schemes have been proposed and commercial products are now available. Since most systems are laser based, speckle noise and other non-signal interference in the system have been problematic, limiting the technique's phase sensitivity, image quality and the ability for accurate quantitative analysis. Low coherence source-based HPM have also been proposed to mitigate this issue, but often with increased system complexity and reduced implementation flexibility. Here, we demonstrate a swept-source HPM technique, which acquires on-axis holograms while continuously scanning the laser through a range of wavelengths. This technique is capable of identifying interference from various sources and effectively isolating sample interference, therefore minimizing unwanted signals and achieving high spatial and temporal sensitivity across the entire field of view. The ability of acquiring spectral interferogram for each pixel also make it possible to implement spectral shaping, which can further suppress interference side-lobes and improve sensitivity. Additionally, when coupled with a spectral modulation technique, such interference spectrum will permit spectroscopic measurement of phase-related properties of the sample. We will introduce the principle of the system, discuss its theoretical sensitivity bound, and present its application to phase imaging of live cells.

  3. Fourier Transform Infrared Spectroscopy for Identification and Quantification of Organic Functional Groups in Aqueous Phase Secondary Organic Aerosol

    NASA Astrophysics Data System (ADS)

    George, K.; Ruthenburg, T. C.; Smith, J.; Anastasio, C.; Dillner, A. M.

    2011-12-01

    Particles in the atmosphere influence visibility, climate, and human health. Secondary organic aerosols (SOA) formed from chemical reactions in the atmosphere constitute a portion of total organic particle mass. Most research on SOA has focused on gas phase reactions; however, reactions taking place in cloud and fog drops may be significant. One group of water-soluble compounds that participate in these reactions is phenols. Phenols, emitted from biomass burning, react in the aqueous phase to form low-volatility SOA products. The products formed from these reactions are currently poorly characterized. In order to characterize laboratory-generated samples, we are developing an attenuated total reflectance-Fourier transform infrared spectroscopic (ATR-FTIR) technique to identify and quantify organic functional groups in SOA. Aqueous SOA is made in the laboratory by illuminating solutions of phenolic compounds with an oxidant. The illuminated solution is then blown to dryness in order to determine the mass of SOA produced. The dry SOA is reconstituted in water and drops of this solution are placed onto a single-reflection ATR accessory. In order to identify and quantify functional groups in the complex SOA samples, it is necessary to calibrate with compounds and mixtures of compounds containing bond types similar to those found in the laboratory-generated SOA. Initially, focus has been placed on multiple peaks located in the region between 1800 cm-1 and 800 cm-1, including peaks for C=O and C-O. We distinguish between characteristic absorbances to begin determining the organic functional group composition of the SOA samples. This ATR-FTIR technique complements information from mass spectrometry measurements and allows us to quantify organic mass for non-volatile SOA products.

  4. Compression and denoising in magnetic resonance imaging via SVD on the Fourier domain using computer algebra

    NASA Astrophysics Data System (ADS)

    Díaz, Felipe

    2015-09-01

    Magnetic resonance (MR) data reconstruction can be computationally a challenging task. The signal-to-noise ratio might also present complications, especially with high-resolution images. In this sense, data compression can be useful not only for reducing the complexity and memory requirements, but also to reduce noise, even to allow eliminate spurious components.This article proposes the use of a system based on singular value decomposition of low order for noise reconstruction and reduction in MR imaging system. The proposed method is evaluated using in vivo MRI data. Rebuilt images with less than 20 of the original data and with similar quality in terms of visual inspection are presented. Also a quantitative evaluation of the method is presented.

  5. A Fourier slice theorem for magnetic particle imaging using a field-free line

    NASA Astrophysics Data System (ADS)

    Knopp, T.; Erbe, M.; Sattel, T. F.; Biederer, S.; Buzug, T. M.

    2011-09-01

    The magnetic particle imaging method is capable of imaging the distribution of magnetic nanoparticles in vivo. The sensitivity of the method can be significantly improved using a signal encoding scheme, which applies a field-free line (FFL) instead of the commonly used field-free point (FFP). Recent efforts have considerably improved the efficiency of the coil topology used to generate the FFL. However, until now it has not been investigated how the reconstruction of the particle distribution can be efficiently carried out when using the FFL encoding scheme. In this work, it is shown that the induced signal is linked to the Radon transform of the particle distribution. Hence, a fast algorithm for the reconstruction of the particle distribution can be derived, which first transforms the induced signal into Radon space and second applies a common reconstruction algorithm to transform the Radon data into image space.

  6. Short memory fuzzy fusion image recognition schema employing spatial and Fourier descriptors

    NASA Astrophysics Data System (ADS)

    Raptis, Sotiris N.; Tzafestas, Spyros G.

    2001-03-01

    Single images quite often do not bear enough information for precise interpretation due to a variety of reasons. Multiple image fusion and adequate integration recently became the state of the art in the pattern recognition field. In this paper presented here and enhanced multiple observation schema is discussed investigating improvements to the baseline fuzzy- probabilistic image fusion methodology. The first innovation introduced consists in considering only a limited but seemingly ore effective part of the uncertainty information obtained by a certain time restricting older uncertainty dependencies and alleviating computational burden that is now needed for short sequence (stored into memory) of samples. The second innovation essentially grouping them into feature-blind object hypotheses. Experiment settings include a sequence of independent views obtained by camera being moved around the investigated object.

  7. Analysis of the Spectral Characteristics of Pure Moxa Stick Burning by Hyperspectral Imaging and Fourier Transform Infrared Spectroscopy

    PubMed Central

    Li, Yin-long

    2016-01-01

    The objective of this study was to investigate the spectra characteristics (SC) at wavelengths of 400~1000 nm and 2.5~15.5 μm of pure moxa stick (MS) during its 25-minute burning process using new spectral imaging techniques. Spectral images were collected for the burning pure MS at 5, 10, 15, 20, and 25 min using hyperspectral imaging (HSI) and Fourier transform infrared spectroscopy (FTIR) for the first time. The results showed that, at wavelengths of 400~1000 nm, the spectral range of the cross section of MS burning was 750~980 nm; the peak position was 860 nm. At wavelengths of 2.5~15.5 μm, the spectral range of the cross section of MS burning was 3.0~4.0 μm; the peak position was approximately 3.5 μm. The radiation spectra of MS burning include litter red and amount of infrared (but mainly near infrared) wavelengths. The temperature, blood perfusion, and oxygen saturation increase of Shenshu (BL23) after moxibustion radiation were observed too. According to mechanism of photobiological effects and moxibustion biological effects, it was inferred that moxibustion effects should be linked with moxibustion SC. This study provided new data and means for physical properties of moxibustion research. PMID:27721889

  8. Concentration determination of collagen and proteoglycan in bovine nasal cartilage by Fourier transform infrared imaging and PLS

    NASA Astrophysics Data System (ADS)

    Zhang, Xuexi; Xiao, Zhi-Yan; Yin, Jianhua; Xia, Yang

    2014-09-01

    Fourier transform infrared imaging (FTIRI) combined with chemometrics can be used to detect the structure of bio-macromolecule, measure the concentrations of some components, and so on. In this study, FTIRI with Partial Least-Squares (PLS) regression was applied to study the concentration of two main components in bovine nasal cartilage (BNC), collagen and proteoglycan. An infrared spectrum library was built by mixing the collagen and chondroitin 6-sulfate (main of proteoglycan) at different ratios. Some pretreatments are needed for building PLS model. FTIR images were collected from BNC sections at 6.25μm and 25μm pixel size. The spectra extracted from BNC-FTIR images were imported into the PLS regression program to predict the concentrations of collagen and proteoglycan. These PLS-determined concentrations are agreed with the result in our previous work and biochemical analytical results. The prediction shows that the concentrations of collagen and proteoglycan in BNC are comparative on the whole. However, the concentration of proteoglycan is a litter higher than that of collagen, to some extent.

  9. Tests of various colorants for application of a Fourier transform infrared imaging system to deciphering obliterated writings

    NASA Astrophysics Data System (ADS)

    Sugawara, Shigeru

    2015-10-01

    Obliterated writing is writing that has been obscured by different-colored materials. There are obliterated writings that cannot be detected by conventional methods. A method for deciphering such obliterated writings was developed in this study. Mid-infrared spectroscopic imaging in the wavelength range of 2.5-14 μm was used for deciphering because the infrared spectrum differs among different brands of colorants. Obliterated writings were made by pressing information protection stamps onto characters written by 4 kinds of colorants. The samples were tested for deciphering by the Fourier-transform infrared imaging system. Two peak areas of two specific wavenumber regions of each reflectance spectrum were calculated and the ratio of the two values is displayed as a unique gray scale in the spectroscopic image. As a result, the absorption peak at various wavenumbers could be used to decipher obliterated writings that could not be detected by the conventional methods. Ten different parameters for deciphering obliterated writing were found in this study.

  10. Ground-Based Measurement Experiment and First Results with Geosynchronous-Imaging Fourier Transform Spectrometer Engineering Demonstration Unit

    NASA Technical Reports Server (NTRS)

    Zhou, Daniel K.; Smith, William L.; Bingham, Gail E.; Huppi, Ronald J.; Revercomb, Henry E.; Zollinger, Lori J.; Larar, Allen M.; Liu, Xu; Tansock, Joseph J.; Reisse, Robert A.; Hooker, Ronald

    2007-01-01

    The geosynchronous-imaging Fourier transform spectrometer (GIFTS) engineering demonstration unit (EDU) is an imaging infrared spectrometer designed for atmospheric soundings. It measures the infrared spectrum in two spectral bands (14.6 to 8.8 microns, 6.0 to 4.4 microns) using two 128 x 128 detector arrays with a spectral resolution of 0.57 cm(exp -1) with a scan duration of approximately 11 seconds. From a geosynchronous orbit, the instrument will have the capability of taking successive measurements of such data to scan desired regions of the globe, from which atmospheric status, cloud parameters, wind field profiles, and other derived products can be retrieved. The GIFTS EDU provides a flexible and accurate testbed for the new challenges of the emerging hyperspectral era. The EDU ground-based measurement experiment, held in Logan, Utah during September 2006, demonstrated its extensive capabilities and potential for geosynchronous and other applications (e.g., Earth observing environmental measurements). This paper addresses the experiment objectives and overall performance of the sensor system with a focus on the GIFTS EDU imaging capability and proof of the GIFTS measurement concept.

  11. Fourier domain design of microgrid imaging polarimeters with improved spatial resolution

    NASA Astrophysics Data System (ADS)

    Hirakawa, Keigo; LeMaster, Daniel A.

    2014-05-01

    Microgrid polarimetric imagers sacrifice spatial resolution for sensitivity to states of linear polarization. We have recently shown that a 2 × 4 microgrid analyzer pattern sacrifices less spatial resolution than the conventional 2× 2 case without compromising polarization sensitivity. In this paper, we discuss the design strategy that uncovered the spatial resolution benefits of the 2 × 4 array.

  12. Improved Two-Dimensional Millimeter-Wave Imaging for Concealed Weapon Detection Through Partial Fourier Sampling

    NASA Astrophysics Data System (ADS)

    Farsaei, Amir Ashkan; Mokhtari-Koushyar, Farzad; Javad Seyed-Talebi, Seyed Mohammad; Kavehvash, Zahra; Shabany, Mahdi

    2016-03-01

    Active millimeter-wave imaging based on synthetic aperture focusing offers certain unique and practical advantages in nondestructive testing applications. Traditionally, the imaging for this purpose is performed through a long procedure of raster scanning with a single antenna across a two-dimensional grid, leading to a slow, bulky, and expensive scanning platform. In this paper, an improved bistatic structure based on radial compressive sensing is proposed, where one fixed transmitter antenna and a linear array of receiving antennas are used. The main contributions of this paper are (a) reducing the scanning time, (b) improving the output quality, and (c) designing an inexpensive setup. These improvements are the result of the underlying proposed simpler scanning structure and faster reconstruction process.

  13. Cross-breeding of a BEAR and a TIGER: the ultimate imaging Fourier transform spectrometer?

    NASA Astrophysics Data System (ADS)

    Maillard, Jean-Pierre; Bacon, Roland

    2000-08-01

    BEAR is a high-resolution imaging FTS in operation on the CFH Telescope, obtained by the coupling of a step-scan FTS and a near IR camera. TIGER is a integral field spectrometer (IFS) for the visible, which was in operation at CFHT, in which a microlens array segments a small entrance field. A new version (OASIS() has been made to be used behind an adaptive optics system, leading to an even smaller field of view. By adapting a TIGER-type field segmentation on an imaging FTS, the instrument remains an IFS more versatile than each instrument taken separately. Such an instrument would be characterized by the access to the same spatial resolution, but on a field larger than with a TIGER instrument, a larger spectral coverage, a continuously chosen spectral resolution as in an FTS, and a better sensitivity than a BEAR instrument. For that, a mosaic of microlens array, made in an IR glass transparent between 1 and 5 microns, is paving one input port of a large field dual-output port interferometer which has a provision for a mirror travel of 5 mm, giving the choice for a resolution up to 104 at 1.7 micrometers . A prism on each output beam disperse the entrance points which are imaged on InSb array. A camera on each output beam records an image at each step of the FTS. This concept can be of interest for the instrumentation of a large ground-based telescope or better for a NGST.

  14. Quantitative phase imaging with programmable illumination

    NASA Astrophysics Data System (ADS)

    Kim, Taewoo; Edwards, Chris; Goddard, Lynford L.; Popescu, Gabriel

    2015-03-01

    Even with the recent rapid advances in the field of microscopy, non-laser light sources used for light microscopy have not been developing significantly. Most current optical microscopy systems use halogen bulbs as their light sources to provide a white-light illumination. Due to the confined shapes and finite filament size of the bulbs, little room is available for modification in the light source, which prevents further advances in microscopy. By contrast, commercial projectors provide a high power output that is comparable to the halogen lamps while allowing for great flexibility in patterning the illumination. In addition to their high brightness, the illumination can be patterned to have arbitrary spatial and spectral distributions. Therefore, commercial projectors can be adopted as a flexible light source to an optical microscope by careful alignment to the existing optical path. In this study, we employed a commercial projector source to a quantitative phase imaging system called spatial light interference microscopy (SLIM), which is an outside module for an existing phase contrast (PC) microscope. By replacing the ring illumination of PC with a ring-shaped pattern projected onto the condenser plane, we were able to recover the same result as the original SLIM. Furthermore, the ring illumination is replaced with multiple dots aligned along the same ring to minimize the overlap between the scattered and unscattered fields. This new method minimizes the halo artifact of the imaging system, which allows for a halo-free high-resolution quantitative phase microscopy system.

  15. Combined Parallel and Partial Fourier MR Reconstruction for Accelerated 8-Channel Hyperpolarized Carbon-13 In Vivo Magnetic Resonance Spectroscopic Imaging (MRSI)

    PubMed Central

    Ohliger, Michael A.; Larson, Peder E.Z.; Bok, Robert A.; Shin, Peter; Hu, Simon; Tropp, James; Robb, Fraser; Carvajal, Lucas; Nelson, Sarah J.; Kurhanewicz, John; Vigneron, Daniel B.

    2013-01-01

    Purpose To implement and evaluate combined parallel magnetic resonance imaging (MRI) and partial Fourier acquisition and reconstruction for rapid hyperpolarized carbon-13 (13C) spectroscopic imaging. Short acquisition times mitigate hyperpolarized signal losses that occur due to T1 decay, metabolism, and radiofrequency (RF) saturation. Human applications additionally require rapid imaging to permit breath-holding and to minimize the effects of physiologic motion. Materials and Methods Numerical simulations were employed to validate and characterize the reconstruction. In vivo MR spectroscopic images were obtained from a rat following injection of hyperpolarized 13C pyruvate using an 8-channel array of carbon-tuned receive elements. Results For small spectroscopic matrix sizes, combined parallel imaging and partial Fourier undersampling resulted primarily in decreased spatial resolution, with relatively less visible spatial aliasing. Parallel reconstruction qualitatively restored lost image detail, although some pixel spectra had persistent numerical error. With this technique, a 30 × 10 × 16 matrix of 4800 3D MR spectroscopy imaging voxels from a whole rat with isotropic 8 mm3 resolution was acquired within 11 seconds. Conclusion Parallel MRI and partial Fourier acquisitions can provide the shorter imaging times and wider spatial coverage that will be necessary as hyperpolarized 13C techniques move toward human clinical applications. PMID:23293097

  16. PHASED ARRAY FEED CALIBRATION, BEAMFORMING, AND IMAGING

    SciTech Connect

    Landon, Jonathan; Elmer, Michael; Waldron, Jacob; Jones, David; Stemmons, Alan; Jeffs, Brian D.; Warnick, Karl F.; Richard Fisher, J.; Norrod, Roger D.

    2010-03-15

    Phased array feeds (PAFs) for reflector antennas offer the potential for increased reflector field of view and faster survey speeds. To address some of the development challenges that remain for scientifically useful PAFs, including calibration and beamforming algorithms, sensitivity optimization, and demonstration of wide field of view imaging, we report experimental results from a 19 element room temperature L-band PAF mounted on the Green Bank 20 Meter Telescope. Formed beams achieved an aperture efficiency of 69% and a system noise temperature of 66 K. Radio camera images of several sky regions are presented. We investigate the noise performance and sensitivity of the system as a function of elevation angle with statistically optimal beamforming and demonstrate cancelation of radio frequency interference sources with adaptive spatial filtering.

  17. Balloon Demonstrator Imaging Fourier Transform Spectrometer for the Measurement of Methane and Carbon Dioxide over the Arctic

    NASA Astrophysics Data System (ADS)

    McElroy, C. T.; Walker, K. A.; Vaziri, Z.; Moeini, O.; Martin, R.

    2014-12-01

    The Arctic multi-year ice cover is disappearing more rapidly than climate models estimate and the Arctic climate is also changing. With declining ice cover, the Arctic Ocean will likely be subject to increased shipping traffic in addition to exploration activity for natural resources with a concomitant increase in air pollution. Thus, there is a multifaceted need to monitor the polar region. A number of Canadian government departments, led by the Canadian Space Agency (CSA), are proposing the Polar Communications and Weather (PCW) mission to provide improved communications and critically important meteorological and air quality information for the Arctic using an operational meteorological imager. Two satellites in highly eccentric orbits with apogees at ~ 40,000 km over the Arctic would provide quasi-geostationary viewing over the Arctic with 24-7 coverage in the IR and measurements using solar reflected light in the summertime. The planned operational meteorological instrument is a 21-channel spectral imager with UV, visible, NIR and MIR channels similar to MODIS and ABI. This presentation will focus on the development of an Imaging Fourier Transform Spectrometer (IFTS) to be flown on a high-altitude balloon to demonstrate the capacity to monitor methane and carbon dioxide in the Arctic as part of the PHEOS-WCA (Weather, Climate and Air quality) mission, which is an atmospheric science complement to the operational PCW mission.Funding is now in place to develop the demonstrator IFTS to show that images of methane and carbon dioxide can be collected from space. The characteristics of the instrument and plans for the balloon flight will be discussed and details of the full PCW mission and PHEOS-WCA component will be presented. The author wishes to acknowledge the support of the PHEOS-WCA science team.

  18. Multiple template-based image matching using alpha-rooted quaternion phase correlation

    NASA Astrophysics Data System (ADS)

    DelMarco, Stephen

    2010-04-01

    In computer vision applications, image matching performed on quality-degraded imagery is difficult due to image content distortion and noise effects. State-of-the art keypoint based matchers, such as SURF and SIFT, work very well on clean imagery. However, performance can degrade significantly in the presence of high noise and clutter levels. Noise and clutter cause the formation of false features which can degrade recognition performance. To address this problem, previously we developed an extension to the classical amplitude and phase correlation forms, which provides improved robustness and tolerance to image geometric misalignments and noise. This extension, called Alpha-Rooted Phase Correlation (ARPC), combines Fourier domain-based alpha-rooting enhancement with classical phase correlation. ARPC provides tunable parameters to control the alpha-rooting enhancement. These parameter values can be optimized to tradeoff between high narrow correlation peaks, and more robust wider, but smaller peaks. Previously, we applied ARPC in the radon transform domain for logo image recognition in the presence of rotational image misalignments. In this paper, we extend ARPC to incorporate quaternion Fourier transforms, thereby creating Alpha-Rooted Quaternion Phase Correlation (ARQPC). We apply ARQPC to the logo image recognition problem. We use ARQPC to perform multiple-reference logo template matching by representing multiple same-class reference templates as quaternion-valued images. We generate recognition performance results on publicly-available logo imagery, and compare recognition results to results generated from standard approaches. We show that small deviations in reference templates of sameclass logos can lead to improved recognition performance using the joint matching inherent in ARQPC.

  19. Vacuum compatible sample positioning device for matrix assisted laser desorption∕ionization Fourier transform ion cyclotron resonance mass spectrometry imaging.

    PubMed

    Aizikov, Konstantin; Smith, Donald F; Chargin, David A; Ivanov, Sergei; Lin, Tzu-Yung; Heeren, Ron M A; O'Connor, Peter B

    2011-05-01

    The high mass accuracy and resolving power of Fourier transform ion cyclotron resonance mass spectrometers (FT-ICR MS) make them ideal mass detectors for mass spectrometry imaging (MSI), promising to provide unmatched molecular resolution capabilities. The intrinsic low tolerance of FT-ICR MS to RF interference, however, along with typically vertical positioning of the sample, and MSI acquisition speed requirements present numerous engineering challenges in creating robotics capable of achieving the spatial resolution to match. This work discusses a two-dimensional positioning stage designed to address these issues. The stage is capable of operating in ∼1 × 10(-8) mbar vacuum. The range of motion is set to 100 mm × 100 mm to accommodate large samples, while the positioning accuracy is demonstrated to be less than 0.4 micron in both directions under vertical load over the entire range. This device was integrated into three different matrix assisted laser desorption∕ionization (MALDI) FT-ICR instruments and showed no detectable RF noise. The "oversampling" MALDI-MSI experiments, under which the sample is completely ablated at each position, followed by the target movement of the distance smaller than the laser beam, conducted on the custom-built 7T FT-ICR MS demonstrate the stability and positional accuracy of the stage robotics which delivers high spatial resolution mass spectral images at a fraction of the laser spot diameter.

  20. A four class model for digital breast histopathology using high-definition Fourier transform infrared (FT-IR) spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Mittal, Shachi; Wrobel, Tomasz P.; Leslie, L. S.; Kadjacsy-Balla, Andre; Bhargava, Rohit

    2016-03-01

    High-definition (HD) Fourier transform infrared (FT-IR) spectroscopic imaging is an emerging technique that not only enables chemistry-based visualization of tissue constituents, and label free extraction of biochemical information but its higher spatial detail makes it a potentially useful platform to conduct digital pathology. This methodology, along with fast and efficient data analysis, can enable both quantitative and automated pathology. Here we demonstrate a combination of HD FT-IR spectroscopic imaging of breast tissue microarrays (TMAs) with data analysis algorithms to perform histologic analysis. The samples comprise four tissue states, namely hyperplasia, dysplasia, cancerous and normal. We identify various cell types which would act as biomarkers for breast cancer detection and differentiate between them using statistical pattern recognition tools i.e. Random Forest (RF) and Bayesian algorithms. Feature optimization is integrally carried out for the RF algorithm, reducing computation time as well as redundant spectral features. We achieved an order of magnitude reduction in the number of features with comparable prediction accuracy to that of the original feature set. Together, the demonstration of histology and selection of features paves the way for future applications in more complex models and rapid data acquisition.

  1. Imaging of Osteoarthritic Human Articular Cartilage using Fourier Transform Infrared Microspectroscopy Combined with Multivariate and Univariate Analysis

    PubMed Central

    Oinas, J.; Rieppo, L.; Finnilä, M. A. J.; Valkealahti, M.; Lehenkari, P.; Saarakkala, S.

    2016-01-01

    The changes in chemical composition of human articular cartilage (AC) caused by osteoarthritis (OA) were investigated using Fourier transform infrared microspectroscopy (FTIR-MS). We demonstrate the sensitivity of FTIR-MS for monitoring compositional changes that occur with OA progression. Twenty-eight AC samples from tibial plateaus were imaged with FTIR-MS. Hyperspectral images of all samples were combined for K-means clustering. Partial least squares regression (PLSR) analysis was used to compare the spectra with the OARSI grade (histopathological grading of OA). Furthermore, the amide I and the carbohydrate regions were used to estimate collagen and proteoglycan contents, respectively. Spectral peak at 1338 cm−1 was used to estimate the integrity of the collagen network. The layered structure of AC was revealed using the carbohydrate region for clustering. Statistically significant correlation was observed between the OARSI grade and the collagen integrity in the superficial (r = −0.55) and the deep (r = −0.41) zones. Furthermore, PLSR models predicted the OARSI grade from the superficial (r = 0.94) and the deep (r = 0.77) regions of the AC with high accuracy. Obtained results suggest that quantitative and qualitative changes occur in the AC composition during OA progression, and these can be monitored by the use of FTIR-MS. PMID:27445254

  2. Imaging of Osteoarthritic Human Articular Cartilage using Fourier Transform Infrared Microspectroscopy Combined with Multivariate and Univariate Analysis.

    PubMed

    Oinas, J; Rieppo, L; Finnilä, M A J; Valkealahti, M; Lehenkari, P; Saarakkala, S

    2016-01-01

    The changes in chemical composition of human articular cartilage (AC) caused by osteoarthritis (OA) were investigated using Fourier transform infrared microspectroscopy (FTIR-MS). We demonstrate the sensitivity of FTIR-MS for monitoring compositional changes that occur with OA progression. Twenty-eight AC samples from tibial plateaus were imaged with FTIR-MS. Hyperspectral images of all samples were combined for K-means clustering. Partial least squares regression (PLSR) analysis was used to compare the spectra with the OARSI grade (histopathological grading of OA). Furthermore, the amide I and the carbohydrate regions were used to estimate collagen and proteoglycan contents, respectively. Spectral peak at 1338 cm(-1) was used to estimate the integrity of the collagen network. The layered structure of AC was revealed using the carbohydrate region for clustering. Statistically significant correlation was observed between the OARSI grade and the collagen integrity in the superficial (r = -0.55) and the deep (r = -0.41) zones. Furthermore, PLSR models predicted the OARSI grade from the superficial (r = 0.94) and the deep (r = 0.77) regions of the AC with high accuracy. Obtained results suggest that quantitative and qualitative changes occur in the AC composition during OA progression, and these can be monitored by the use of FTIR-MS. PMID:27445254

  3. Ultrafast nuclear dynamics in halomethanes studied with time-resolved Coulomb explosion imaging and channel-selective Fourier spectroscopy

    NASA Astrophysics Data System (ADS)

    Malakar, Y.; Kaderiya, B.; Pearson, W. L.; Ziaee, F.; Kanaka Raju, P.; Zohrabi, M.; Jensen, K.; Rajput, J.; Ben-Itzhak, I.; Rolles, D.; Rudenko, A.

    2016-05-01

    Halomethanes have recently attracted considerable attention since they often serve as prototype systems for laser-controlled chemistry (e.g., selective bond breaking or concerted elimination reactions), and are important molecules in atmospheric chemistry. Here we combine a femtosecond laser pump-probe setup with coincident 3D ion momentum imaging apparatus to study strong-field induced nuclear dynamics in methane and several of its halogenated derivatives (CH3 I, CH2 I2, CH2 ICl). We apply a time-resolved Coulomb explosion imaging technique to map the nuclear motion on both, bound and continuum potential surfaces, disentangle different fragmentation pathways and, for halogenated molecules, observe clear signatures of vibrational wave packets in neutral or ionized states. Channel-selective and kinetic-energy resolved Fourier analysis of these data allows for unique identification of different electronic states and vibrational modes responsible for a particular structure. Supported by the Chemical Sciences, Geosciences, and Biosciences Division, Office of Basic Energy Sciences, Office of Science, U. S. DOE. K. R. P. and W. L. P. supported by NSF Award No. IIA-143049. K.J. supported by the NSF-REU Grant No. PHYS-1461251.

  4. Vacuum compatible sample positioning device for matrix assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry imaging

    SciTech Connect

    Aizikov, Konstantin; Lin, Tzu-Yung; Smith, Donald F.; Heeren, Ron M. A.; Chargin, David A.; Ivanov, Sergei; O'Connor, Peter B.

    2011-05-15

    The high mass accuracy and resolving power of Fourier transform ion cyclotron resonance mass spectrometers (FT-ICR MS) make them ideal mass detectors for mass spectrometry imaging (MSI), promising to provide unmatched molecular resolution capabilities. The intrinsic low tolerance of FT-ICR MS to RF interference, however, along with typically vertical positioning of the sample, and MSI acquisition speed requirements present numerous engineering challenges in creating robotics capable of achieving the spatial resolution to match. This work discusses a two-dimensional positioning stage designed to address these issues. The stage is capable of operating in {approx}1 x 10{sup -8} mbar vacuum. The range of motion is set to 100 mm x 100 mm to accommodate large samples, while the positioning accuracy is demonstrated to be less than 0.4 micron in both directions under vertical load over the entire range. This device was integrated into three different matrix assisted laser desorption/ionization (MALDI) FT-ICR instruments and showed no detectable RF noise. The ''oversampling'' MALDI-MSI experiments, under which the sample is completely ablated at each position, followed by the target movement of the distance smaller than the laser beam, conducted on the custom-built 7T FT-ICR MS demonstrate the stability and positional accuracy of the stage robotics which delivers high spatial resolution mass spectral images at a fraction of the laser spot diameter.

  5. Investigating the biochemical progression of liver disease through fibrosis, cirrhosis, dysplasia, and hepatocellular carcinoma using Fourier transform infrared spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Sreedhar, Hari; Pant, Mamta; Ronquillo, Nemencio R.; Davidson, Bennett; Nguyen, Peter; Chennuri, Rohini; Choi, Jacqueline; Herrera, Joaquin A.; Hinojosa, Ana C.; Jin, Ming; Kajdacsy-Balla, Andre; Guzman, Grace; Walsh, Michael J.

    2014-03-01

    Hepatocellular carcinoma (HCC) is the most common form of primary hepatic carcinoma. HCC ranks the fourth most prevalent malignant tumor and the third leading cause of cancer related death in the world. Hepatocellular carcinoma develops in the context of chronic liver disease and its evolution is characterized by progression through intermediate stages to advanced disease and possibly even death. The primary sequence of hepatocarcinogenesis includes the development of cirrhosis, followed by dysplasia, and hepatocellular carcinoma.1 We addressed the utility of Fourier Transform Infrared (FT-IR) spectroscopic imaging, both as a diagnostic tool of the different stages of the disease and to gain insight into the biochemical process associated with disease progression. Tissue microarrays were obtained from the University of Illinois at Chicago tissue bank consisting of liver explants from 12 transplant patients. Tissue core biopsies were obtained from each explant targeting regions of normal, liver cell dysplasia including large cell change and small cell change, and hepatocellular carcinoma. We obtained FT-IR images of these tissues using a modified FT-IR system with high definition capabilities. Firstly, a supervised spectral classifier was built to discriminate between normal and cancerous hepatocytes. Secondly, an expanded classifier was built to discriminate small cell and large cell changes in liver disease. With the emerging advances in FT-IR instrumentation and computation there is a strong drive to develop this technology as a powerful adjunct to current histopathology approaches to improve disease diagnosis and prognosis.

  6. Fourier Transform Infrared Imaging Showing Reduced Unsaturated Lipid Content in the Hippocampus of a mouse Model of Alzheimer's Disease

    SciTech Connect

    Leskovjan, A.C.; Kretlow, A.; Miller, L.M.

    2010-04-01

    Polyunsaturated fatty acids are essential to brain functions such as membrane fluidity, signal transduction, and cell survival. It is also thought that low levels of unsaturated lipid in the brain may contribute to Alzheimer's disease (AD) risk or severity. However, it is not known how accumulation of unsaturated lipids is affected in different regions of the hippocampus, which is a central target of AD plaque pathology, during aging. In this study, we used Fourier transform infrared imaging (FTIRI) to visualize the unsaturated lipid content in specific regions of the hippocampus in the PSAPP mouse model of AD as a function of plaque formation. Specifically, the unsaturated lipid content was imaged using the olefinic {double_bond}CH stretching mode at 3012 cm{sup -1}. The axonal, dendritic, and somatic layers of the hippocampus were examined in the mice at 13, 24, 40, and 56 weeks old. Results showed that lipid unsaturation in the axonal layer was significantly increased with normal aging in control (CNT) mice (p < 0.01) but remained low and relatively constant in PSAPP mice. Thus, these findings indicate that unsaturated lipid content is reduced in hippocampal white matter during amyloid pathogenesis and that maintaining unsaturated lipid content early in the disease may be critical in avoiding progression of the disease.

  7. Vacuum compatible sample positioning device for matrix assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry imaging

    PubMed Central

    Aizikov, Konstantin; Smith, Donald F.; Chargin, David A.; Ivanov, Sergei; Lin, Tzu-Yung; Heeren, Ron M. A.; O’Connor, Peter B.

    2011-01-01

    The high mass accuracy and resolving power of Fourier transform ion cyclotron resonance mass spectrometers (FT-ICR MS) make them ideal mass detectors for mass spectrometry imaging (MSI), promising to provide unmatched molecular resolution capabilities. The intrinsic low tolerance of FT-ICR MS to RF interference, however, along with typically vertical positioning of the sample, and MSI acquisition speed requirements present numerous engineering challenges in creating robotics capable of achieving the spatial resolution to match. This work discusses a two-dimensional positioning stage designed to address these issues. The stage is capable of operating in ∼1 × 10–8 mbar vacuum. The range of motion is set to 100 mm × 100 mm to accommodate large samples, while the positioning accuracy is demonstrated to be less than 0.4 micron in both directions under vertical load over the entire range. This device was integrated into three different matrix assisted laser desorption/ionization (MALDI) FT-ICR instruments and showed no detectable RF noise. The “oversampling” MALDI-MSI experiments, under which the sample is completely ablated at each position, followed by the target movement of the distance smaller than the laser beam, conducted on the custom-built 7T FT-ICR MS demonstrate the stability and positional accuracy of the stage robotics which delivers high spatial resolution mass spectral images at a fraction of the laser spot diameter. PMID:21639522

  8. Toward Fourier interferometry fluorescence excitation/emission imaging of malignant cells combined with photoacoustic microscopy

    NASA Astrophysics Data System (ADS)

    Kohen, Elli; Hirschberg, Joseph G.; Berry, John P.; Ozkutuk, Nuri; Ornek, Ceren; Monti, Marco; Leblanc, Roger M.; Schachtschabel, Dietrich O.; Haroon, Sumaira

    2003-10-01

    Dual excitation fluorescence imaging has been used as a first step towards multi-wavelength excitation/emission fluorescence spectral imaging. Target cells are transformed keratinocytes, and other osteosarcoma, human breast and color cancer cells. Mitochondrial membrane potential probes, e.g. TMRM (tetramethylrhodamine methyl ester), Mitotracker Green (Molecular Probes, Inc., Eugene OR,USA; a recently synthesized mitochondrial oxygen probe, [PRE,P1"- pyrene butyl)-2-rhodamine ester] allow dual excitation in the UV plus in teh blue-green spectral regions. Also, using the natural endogenous probe NAD(P)H, preliminary results indicate mitochondrial responses to metabolic challenges (e.g. glucose addition), plus changes in mitochonrial distribution and morphology. In terms of application to biomedicine (for diagnostiscs, prognostsics and drug trials) three parameters have been selected in addition to the natural probe NAD(P)H, i.e. vital fluorescence probing of mitochondria, lysosomes and Golgi apparatus. It is hoped that such a multiparameter approach will allow malignant cell characterization and grading. A new area being introduced is the use of similar methodology for biotechnical applications such as the study of the hydrogen-producing alga Chlamydomonas Reinhardtii, and possible agricultural applications, such as Saccharomyces yeast for oenology. Complementation by Photoacoustic Microscopy is also contemplated, to study the internal conversion component which follows the excitation by photons.

  9. Phase correlation imaging of unlabeled cell dynamics

    NASA Astrophysics Data System (ADS)

    Ma, Lihong; Rajshekhar, Gannavarpu; Wang, Ru; Bhaduri, Basanta; Sridharan, Shamira; Mir, Mustafa; Chakraborty, Arindam; Iyer, Rajashekar; Prasanth, Supriya; Millet, Larry; Gillette, Martha U.; Popescu, Gabriel

    2016-09-01

    We present phase correlation imaging (PCI) as a novel approach to study cell dynamics in a spatially-resolved manner. PCI relies on quantitative phase imaging time-lapse data and, as such, functions in label-free mode, without the limitations associated with exogenous markers. The correlation time map outputted in PCI informs on the dynamics of the intracellular mass transport. Specifically, we show that PCI can extract quantitatively the diffusion coefficient map associated with live cells, as well as standard Brownian particles. Due to its high sensitivity to mass transport, PCI can be applied to studying the integrity of actin polymerization dynamics. Our results indicate that the cyto-D treatment blocking the actin polymerization has a dominant effect at the large spatial scales, in the region surrounding the cell. We found that PCI can distinguish between senescent and quiescent cells, which is extremely difficult without using specific markers currently. We anticipate that PCI will be used alongside established, fluorescence-based techniques to enable valuable new studies of cell function.

  10. Phase correlation imaging of unlabeled cell dynamics.

    PubMed

    Ma, Lihong; Rajshekhar, Gannavarpu; Wang, Ru; Bhaduri, Basanta; Sridharan, Shamira; Mir, Mustafa; Chakraborty, Arindam; Iyer, Rajashekar; Prasanth, Supriya; Millet, Larry; Gillette, Martha U; Popescu, Gabriel

    2016-01-01

    We present phase correlation imaging (PCI) as a novel approach to study cell dynamics in a spatially-resolved manner. PCI relies on quantitative phase imaging time-lapse data and, as such, functions in label-free mode, without the limitations associated with exogenous markers. The correlation time map outputted in PCI informs on the dynamics of the intracellular mass transport. Specifically, we show that PCI can extract quantitatively the diffusion coefficient map associated with live cells, as well as standard Brownian particles. Due to its high sensitivity to mass transport, PCI can be applied to studying the integrity of actin polymerization dynamics. Our results indicate that the cyto-D treatment blocking the actin polymerization has a dominant effect at the large spatial scales, in the region surrounding the cell. We found that PCI can distinguish between senescent and quiescent cells, which is extremely difficult without using specific markers currently. We anticipate that PCI will be used alongside established, fluorescence-based techniques to enable valuable new studies of cell function. PMID:27615512

  11. Phase correlation imaging of unlabeled cell dynamics

    PubMed Central

    Ma, Lihong; Rajshekhar, Gannavarpu; Wang, Ru; Bhaduri, Basanta; Sridharan, Shamira; Mir, Mustafa; Chakraborty, Arindam; Iyer, Rajashekar; Prasanth, Supriya; Millet, Larry; Gillette, Martha U.; Popescu, Gabriel

    2016-01-01

    We present phase correlation imaging (PCI) as a novel approach to study cell dynamics in a spatially-resolved manner. PCI relies on quantitative phase imaging time-lapse data and, as such, functions in label-free mode, without the limitations associated with exogenous markers. The correlation time map outputted in PCI informs on the dynamics of the intracellular mass transport. Specifically, we show that PCI can extract quantitatively the diffusion coefficient map associated with live cells, as well as standard Brownian particles. Due to its high sensitivity to mass transport, PCI can be applied to studying the integrity of actin polymerization dynamics. Our results indicate that the cyto-D treatment blocking the actin polymerization has a dominant effect at the large spatial scales, in the region surrounding the cell. We found that PCI can distinguish between senescent and quiescent cells, which is extremely difficult without using specific markers currently. We anticipate that PCI will be used alongside established, fluorescence-based techniques to enable valuable new studies of cell function. PMID:27615512

  12. Optical image encryption using password key based on phase retrieval algorithm

    NASA Astrophysics Data System (ADS)

    Zhao, Tieyu; Ran, Qiwen; Yuan, Lin; Chi, Yingying; Ma, Jing

    2016-04-01

    A novel optical image encryption system is proposed using password key based on phase retrieval algorithm (PRA). In the encryption process, a shared image is taken as a symmetric key and the plaintext is encoded into the phase-only mask based on the iterative PRA. The linear relationship between the plaintext and ciphertext is broken using the password key, which can resist the known plaintext attack. The symmetric key and the retrieved phase are imported into the input plane and Fourier plane of 4f system during the decryption, respectively, so as to obtain the plaintext on the CCD. Finally, we analyse the key space of the password key, and the results show that the proposed scheme can resist a brute force attack due to the flexibility of the password key.

  13. The Fourier Imaging X-ray Spectrometer (FIXS) for the Argentinian, Scout-launched satelite de Aplicaciones Cienficas-1 (SAC-1)

    NASA Technical Reports Server (NTRS)

    Dennis, Brian R.; Crannell, Carol JO; Desai, Upendra D.; Orwig, Larry E.; Kiplinger, Alan L.; Schwartz, Richard A.; Hurford, Gordon J.; Emslie, A. Gordon; Machado, Marcos; Wood, Kent

    1988-01-01

    The Fourier Imaging X-ray Spectrometer (FIXS) is one of four instruments on SAC-1, the Argentinian satellite being proposed for launch by NASA on a Scout rocket in 1992/3. The FIXS is designed to provide solar flare images at X-ray energies between 5 and 35 keV. Observations will be made on arcsecond size scales and subsecond time scales of the processes that modify the electron spectrum and the thermal distribution in flaring magnetic structures.

  14. Multicontrast x-ray computed tomography imaging using Talbot-Lau interferometry without phase stepping

    SciTech Connect

    Bevins, Nicholas; Zambelli, Joseph; Li Ke; Qi Zhihua; Chen Guanghong

    2012-01-15

    Purpose: The purpose of this work is to demonstrate that multicontrast computed tomography (CT) imaging can be performed using a Talbot-Lau interferometer without phase stepping, thus allowing for an acquisition scheme like that used for standard absorption CT. Methods: Rather than using phase stepping to extract refraction, small-angle scattering (SAS), and absorption signals, the two gratings of a Talbot-Lau interferometer were rotated slightly to generate a moire pattern on the detector. A Fourier analysis of the moire pattern was performed to obtain separate projection images of each of the three contrast signals, all from the same single-shot of x-ray exposure. After the signals were extracted from the detector data for all view angles, image reconstruction was performed to obtain absorption, refraction, and SAS CT images. A physical phantom was scanned to validate the proposed data acquisition method. The results were compared with a phantom scan using the standard phase stepping approach. Results: The reconstruction of each contrast mechanism produced the expected results. Signal levels and contrasts match those obtained using the phase stepping technique. Conclusions: Absorption, refraction, and SAS CT imaging can be achieved using the Talbot-Lau interferometer without the additional overhead of long scan time and phase stepping.

  15. Encrypted imaging based on algebraic implementation of double random phase encoding.

    PubMed

    Nakano, Kazuya; Takeda, Masafumi; Suzuki, Hiroyuki; Yamaguchi, Masahiro

    2014-05-10

    The security of important information captured by sensors and cameras is currently a growing concern as information theft via techniques such as side-channel attacks become increasingly more prevalent. Double random phase encoding (DRPE) is an optical encryption method based on optical Fourier transform that is currently being used to implement secure coherent optical systems. In this paper, we propose a new DRPE implementation for incoherent optical systems based on integral photography that can be applied to "encrypted imaging (EI)" to optically encrypt an image before it is captured by an image sensor. Because the proposed incoherent DRPE is constituted from conventional DRPE by rewriting the optical encryption via discretization and Euler's formula, its security level is the same as that of conventional DRPE. The results of an experiment in which we encrypted a plaintext image optically and then decrypted it numerically demonstrate that our proposed incoherent optical security system is feasible.

  16. A simple public-key attack on phase-truncation-based double-images encryption system

    NASA Astrophysics Data System (ADS)

    Ding, Xiangling; Yang, Gaobo; He, Dajiang

    2015-07-01

    Phase-truncation based double-images cryptosystem can avoid the iterative Fourier transforms and realize double-images encryption. In this paper, a simple public-key attack is proposed to break this cryptosystem by using arbitrary position parameters and three public keys. The attack process is composed of two steps. Firstly, the decryption keys are simply generated with the help of arbitrary position parameters and the three public keys. Secondly, the two approximate values of the original images are obtained by using the generated decryption keys. Moreover, the proposed public-key attack is different from the existing attacks. It is not sensitive to position parameters of the double-images and the computing efficiency is also much better. Computer simulation results further prove its vulnerability.

  17. Molecular and morphological adaptations in compressed articular cartilage by polarized light microscopy and Fourier-transform infrared imaging.

    PubMed

    Xia, Y; Alhadlaq, H; Ramakrishnan, N; Bidthanapally, A; Badar, F; Lu, M

    2008-10-01

    Fifteen articular cartilage-bone specimens from one canine humeral joint were compressed in the strain range of 0-50%. The deformation of the extracellular matrices in cartilage was preserved and the same tissue sections were studied using polarized light microscopy (PLM) and Fourier-transform infrared imaging (FTIRI). The PLM results show that the most significant changes in the apparent zone thickness due to 'reorganization' of the collagen fibrils based on the birefringence occur between 0% and 20% strain values, where the increase in the superficial zone and decrease in the radial zone thicknesses are approximately linear with the applied strain. The FTIRI anisotropy results show that the two amide components with bond direction perpendicular to the external compression retain anisotropy (amide II in the superficial zone and amide I in the radial zone). In contrast, the measured anisotropy from the two amide components with bond direction parallel to the external compression changes their anisotropy significantly (amide I in the superficial zone and amide II in the radial zone). Statistical analysis shows that there is an excellent correlation (r=0.98) between the relative depth of the minimum retardance in PLM and the relative depth of the amide II anisotropic cross-over. The changes in amide anisotropies in different histological zones are explained by the strain-dependent tipping angle of the amide bonds. These depth-dependent adaptations to static loading in cartilage's morphological structure and chemical distribution could be useful in the future studies of the early diseased cartilage.

  18. Fourier transform magnetic resonance current density imaging (FT-MRCDI) from one component of magnetic flux density.

    PubMed

    Ider, Yusuf Ziya; Birgul, Ozlem; Oran, Omer Faruk; Arikan, Orhan; Hamamura, Mark J; Muftuler, L Tugan

    2010-06-01

    Fourier transform (FT)-based algorithms for magnetic resonance current density imaging (MRCDI) from one component of magnetic flux density have been developed for 2D and 3D problems. For 2D problems, where current is confined to the xy-plane and z-component of the magnetic flux density is measured also on the xy-plane inside the object, an iterative FT-MRCDI algorithm is developed by which both the current distribution inside the object and the z-component of the magnetic flux density on the xy-plane outside the object are reconstructed. The method is applied to simulated as well as actual data from phantoms. The effect of measurement error on the spatial resolution of the current density reconstruction is also investigated. For 3D objects an iterative FT-based algorithm is developed whereby the projected current is reconstructed on any slice using as data the Laplacian of the z-component of magnetic flux density measured for that slice. In an injected current MRCDI scenario, the current is not divergence free on the boundary of the object. The method developed in this study also handles this situation.

  19. Measurement of retinal blood flow in the rat by combining Doppler Fourier-domain optical coherence tomography with fundus imaging

    NASA Astrophysics Data System (ADS)

    Werkmeister, René M.; Vietauer, Martin; Knopf, Corinna; Fürnsinn, Clemens; Leitgeb, Rainer A.; Reitsamer, Herbert; Gröschl, Martin; Garhöfer, Gerhard; Vilser, Walthard; Schmetterer, Leopold

    2014-10-01

    A wide variety of ocular diseases are associated with abnormalities in ocular circulation. As such, there is considerable interest in techniques for quantifying retinal blood flow, among which Doppler optical coherence tomography (OCT) may be the most promising. We present an approach to measure retinal blood flow in the rat using a new optical system that combines the measurement of blood flow velocities via Doppler Fourier-domain optical coherence tomography and the measurement of vessel diameters using a fundus camera-based technique. Relying on fundus images for extraction of retinal vessel diameters instead of OCT images improves the reliability of the technique. The system was operated with an 841-nm superluminescent diode and a charge-coupled device camera that could be operated at a line rate of 20 kHz. We show that the system is capable of quantifying the response of 100% oxygen breathing on the retinal blood flow. In six rats, we observed a decrease in retinal vessel diameters of 13.2% and a decrease in retinal blood velocity of 42.6%, leading to a decrease in retinal blood flow of 56.7%. Furthermore, in four rats, the response of retinal blood flow during stimulation with diffuse flicker light was assessed. Retinal vessel diameter and blood velocity increased by 3.4% and 28.1%, respectively, leading to a relative increase in blood flow of 36.2%;. The presented technique shows much promise to quantify early changes in retinal blood flow during provocation with various stimuli in rodent models of ocular diseases in rats.

  20. Radiometric Modeling and Calibration of the Geostationary Imaging Fourier Transform Spectrometer (GIFTS)Ground Based Measurement Experiment

    NASA Technical Reports Server (NTRS)

    Tian, Jialin; Smith, William L.; Gazarik, Michael J.

    2008-01-01

    The ultimate remote sensing benefits of the high resolution Infrared radiance spectrometers will be realized with their geostationary satellite implementation in the form of imaging spectrometers. This will enable dynamic features of the atmosphere s thermodynamic fields and pollutant and greenhouse gas constituents to be observed for revolutionary improvements in weather forecasts and more accurate air quality and climate predictions. As an important step toward realizing this application objective, the Geostationary Imaging Fourier Transform Spectrometer (GIFTS) Engineering Demonstration Unit (EDU) was successfully developed under the NASA New Millennium Program, 2000-2006. The GIFTS-EDU instrument employs three focal plane arrays (FPAs), which gather measurements across the long-wave IR (LWIR), short/mid-wave IR (SMWIR), and visible spectral bands. The GIFTS calibration is achieved using internal blackbody calibration references at ambient (260 K) and hot (286 K) temperatures. In this paper, we introduce a refined calibration technique that utilizes Principle Component (PC) analysis to compensate for instrument distortions and artifacts, therefore, enhancing the absolute calibration accuracy. This method is applied to data collected during the GIFTS Ground Based Measurement (GBM) experiment, together with simultaneous observations by the accurately calibrated AERI (Atmospheric Emitted Radiance Interferometer), both simultaneously zenith viewing the sky through the same external scene mirror at ten-minute intervals throughout a cloudless day at Logan Utah on September 13, 2006. The accurately calibrated GIFTS radiances are produced using the first four PC scores in the GIFTS-AERI regression model. Temperature and moisture profiles retrieved from the PC-calibrated GIFTS radiances are verified against radiosonde measurements collected throughout the GIFTS sky measurement period. Using the GIFTS GBM calibration model, we compute the calibrated radiances from data

  1. Reactions of metal ions and their clusters in the gas phase using laser ionization: Fourier transform mass spectrometry. Progress report, February 1, 1993--January 31, 1994

    SciTech Connect

    Freiser, B.S.

    1993-09-01

    This report focuses on progress in seven areas: (1) Gas-Phase Reactions of Fe(Benzyne){sup +} with Simple Alkyl Halides; (2) Photodissociation and Collision-Induced Dissociation of Molecular Ions From Methylphenol and Chloromethylphenol; (3) Isotopomer Differentiation Using Metal Ion Chemical Ionization Reagents; (4) Multiple Excitation Collisional Activation (MECA) in Fourier Transform Mass Spectrometry; (5) Chemistry of Fe{sup +}-Arene Ions with Halobenzenes; (6) Gas-Phase Photodissociaton Study of Ag(Benzene){sup +} and Ag(Toluene){sup +}; and (7) Reactivity of Ti{sup 2+} and V{sup 2+} with Small Alkanes.

  2. Fast numerical autofocus of multispectral complex fields in digital holographic microscopy with a criterion based on the phase in the Fourier domain.

    PubMed

    Dohet-Eraly, Jérôme; Yourassowsky, Catherine; Dubois, Frank

    2016-09-01

    The knowledge of the complex amplitude of optical fields, that is, both quantitative phase and intensity, enables numeric reconstruction along the optical axis. Nonetheless, a criterion is required for autofocusing. This Letter presents a robust and rapid refocusing criterion suitable for color interferometric digital holographic microscopy, and, more generally, for applications where complex amplitude is known for at least two different wavelengths. This criterion uses the phase in the Fourier domain, which is compared among wavelengths. It is applicable whatever the nature of the observed object: opaque, refractive, or both mixed. The method is validated with simulated and experimental holograms. PMID:27607975

  3. CHARACTERIZATION OF AMBIENT PM2.5 AEROSOL AT A SOUTHEASTERN US SITE: FOURIER TRANSFORM INFRARED ANALYSIS OR PARTICLE PHASE

    EPA Science Inventory

    During a field study in the summer of 2000 in the Research Triangle Park (RTP), aerosol samples were collected using a five stage cascade impactor and subsequently analyzed using Fourier Transform Infrared Spectroscopy (FTIR). The impaction surfaces were stainless steel disks....

  4. Color image encryption based on color blend and chaos permutation in the reality-preserving multiple-parameter fractional Fourier transform domain

    NASA Astrophysics Data System (ADS)

    Lang, Jun

    2015-03-01

    In this paper, we propose a novel color image encryption method by using Color Blend (CB) and Chaos Permutation (CP) operations in the reality-preserving multiple-parameter fractional Fourier transform (RPMPFRFT) domain. The original color image is first exchanged and mixed randomly from the standard red-green-blue (RGB) color space to R‧G‧B‧ color space by rotating the color cube with a random angle matrix. Then RPMPFRFT is employed for changing the pixel values of color image, three components of the scrambled RGB color space are converted by RPMPFRFT with three different transform pairs, respectively. Comparing to the complex output transform, the RPMPFRFT transform ensures that the output is real which can save storage space of image and convenient for transmission in practical applications. To further enhance the security of the encryption system, the output of the former steps is scrambled by juxtaposition of sections of the image in the reality-preserving multiple-parameter fractional Fourier domains and the alignment of sections is determined by two coupled chaotic logistic maps. The parameters in the Color Blend, Chaos Permutation and the RPMPFRFT transform are regarded as the key in the encryption algorithm. The proposed color image encryption can also be applied to encrypt three gray images by transforming the gray images into three RGB color components of a specially constructed color image. Numerical simulations are performed to demonstrate that the proposed algorithm is feasible, secure, sensitive to keys and robust to noise attack and data loss.

  5. Phase contrast image guidance for synchrotron microbeam radiotherapy

    NASA Astrophysics Data System (ADS)

    Pelliccia, Daniele; Crosbie, Jeffrey C.; Larkin, Kieran G.

    2016-08-01

    Recent image guidance developments for preclinical synchrotron microbeam radiotherapy represent a necessary step for future clinical translation of the technique. Image quality can be further improved using x-ray phase contrast, which is readily available at synchrotron facilities. We here describe a methodology for phase contrast image guidance at the Imaging and Medical Beamline at the Australian Synchrotron. Differential phase contrast is measured alongside conventional attenuation and used to improve the image quality. Post-processing based on the inverse Riesz transform is employed on the measured data to obtain noticeably sharper images. The procedure is extremely well suited for applications such as image guidance which require both visual assessment and sample alignment based on semi automatic image registration. Moreover, our approach can be combined with all other differential phase contrast imaging techniques, in all cases where a quantitative evaluation of the refractive index is not required.

  6. High resolution imaging Fourier transform spectrometer with no moving components for the measurement of atmospheric trace gases

    NASA Astrophysics Data System (ADS)

    Mortimer, H.

    2014-12-01

    A high resolution Static Imaging Fourier Transform Spectrometer, SIFTS, with no moving parts has been developed for the detection of atmospheric gases. The instrument has been shown to have high spectral resolution (4 cm-1) and temporal resolution (10kHz) resolution in both the mid and near infrared and moderate spectral resolution (14cm-1) in the visible. This instrument has been developed for the remote sensing and in-situ measurements of atmospheric gases. It has been identified that due to the low mass and compact size of the instrument system, that the SIFTS could be deployed as a remote sensing instrument onboard a Earth Observation satellite or Unmanned Aerial Vehicle (UAV), or conversely as a radiosonde instrument for in-situ measurements of atmospheric gases. The technique is based on a static optical configuration whereby light is split into two paths and made to recombine along a focal plane producing an interference pattern. The spectral information is returned using a detector array to digitally capture the interferogram which can then be processed into a spectrum by applying a Fourier transform. As there are no moving components, the speed of measurement is determined by the frame rate of the detector array. Thus, this instrument has a temporal advantage over common Michelson FTIR instruments. Using a high speed Toshiba CCD line array, sensitive over the spectral region of 400 - 1100nm, spectra have been recorded at a rate of one every 100 microseconds. Using an uncooled microbolometer infrared detector array, sensitive over the spectral region of 2 to 15μm, the gases NH3, O3 and CH4 have been used to demonstrate the sensitivity of the SIFTS instrument. It has been shown that the Signal to Noise of the SIFTSMIR is >1200 using an integration time of 77msec. The novel optical design has reduced the optics to only 3 optical components, and the detector array, to generate and measure the interferogram. The experimental performance of the SIFTS instrument

  7. Two-dimensional wave-number spectral analysis techniques for phase contrast imaging turbulence imaging data on large helical device.

    PubMed

    Michael, C A; Tanaka, K; Vyacheslavov, L; Sanin, A; Kawahata, K

    2015-09-01

    An analysis method for unfolding the spatially resolved wave-number spectrum and phase velocity from the 2D CO2 laser phase contrast imaging system on the large helical device is described. This is based on the magnetic shear technique which identifies propagation direction from 2D spatial Fourier analysis of images detected by a 6 × 8 detector array. Because the strongest modes have wave-number at the lower end of the instrumental k range, high resolution spectral techniques are necessary to clearly resolve the propagation direction and hence the spatial distribution of fluctuations along the probing laser beam. Multiple-spatial point cross-correlation averaging is applied before calculating the spatial power spectrum. Different methods are compared, and it is found that the maximum entropy method (MEM) gives best results. The possible generation of artifacts from the over-narrowing of spectra are investigated and found not to be a significant problem. The spatial resolution Δρ (normalized radius) around the peak wave-number, for conventional Fourier analysis, is ∼0.5, making physical interpretation difficult, while for MEM, Δρ ∼ 0.1. PMID:26429439

  8. Two-dimensional wave-number spectral analysis techniques for phase contrast imaging turbulence imaging data on large helical device

    SciTech Connect

    Michael, C. A.; Tanaka, K.; Kawahata, K.; Vyacheslavov, L.; Sanin, A.

    2015-09-15

    An analysis method for unfolding the spatially resolved wave-number spectrum and phase velocity from the 2D CO{sub 2} laser phase contrast imaging system on the large helical device is described. This is based on the magnetic shear technique which identifies propagation direction from 2D spatial Fourier analysis of images detected by a 6 × 8 detector array. Because the strongest modes have wave-number at the lower end of the instrumental k range, high resolution spectral techniques are necessary to clearly resolve the propagation direction and hence the spatial distribution of fluctuations along the probing laser beam. Multiple-spatial point cross-correlation averaging is applied before calculating the spatial power spectrum. Different methods are compared, and it is found that the maximum entropy method (MEM) gives best results. The possible generation of artifacts from the over-narrowing of spectra are investigated and found not to be a significant problem. The spatial resolution Δρ (normalized radius) around the peak wave-number, for conventional Fourier analysis, is ∼0.5, making physical interpretation difficult, while for MEM, Δρ ∼ 0.1.

  9. Transport of intensity phase imaging using Bessel sources

    NASA Astrophysics Data System (ADS)

    Petruccelli, Jonathan C.; Chakraborty, Tonmoy

    2016-05-01

    Propagation-based phase contrast using the transport of intensity equation (TIE) allows rapid, deterministic phase retrieval from defocused images. For weakly attenuating objects, phase can be retrieved from a single image. However, the TIE suffers from significant low frequency artifacts due to enhancement of noise during phase retrieval. We demonstrate that by patterning the illumination source as approximately a modified Bessel function of the 2nd kind of zero order, quantitative phase can be imaged directly at the detector within a spatial frequency band. Outside of that band, Bessel sources still improve low frequency performance in phase retrieval.

  10. Image definition evaluation functions for X-ray crystallography: a new perspective on the phase problem.

    PubMed

    Li, Hui; He, Meng; Zhang, Ze

    2015-09-01

    The core theme of X-ray crystallography is reconstructing the electron-density distribution of crystals under the constraints of observed diffraction data. Nevertheless, reconstruction of the electron-density distribution by straightforward Fourier synthesis is usually hindered due to the well known phase problem and the finite resolution of diffraction data. In analogy with optical imaging systems, the reconstructed electron-density map may be regarded as the image of the real electron-density distribution in crystals. Inspired by image definition evaluation functions applied in the auto-focusing process, two evaluation functions are proposed for the reconstructed electron-density images. One of them is based on the atomicity of the electron-density distribution and properties of Fourier synthesis. Tests were performed on synthetic data of known structures, and it was found that this evaluation function can distinguish the correctly reconstructed electron-density image from wrong ones when diffraction data of atomic resolution are available. An algorithm was established based on this evaluation function and applied in reconstructing the electron-density image from the synthetic data of known structures. The other evaluation function, which is based on the positivity of electron density and constrained power spectrum entropy maximization, was designed for cases where only diffraction data of rather limited resolution are available. Tests on the synthetic data indicate that this evaluation function may identify the correct phase set even for a data set with resolution as low as 3.5 Å. Though no algorithm for structure solution has been figured out based on the latter function, the results presented here provide a new perspective on the phase problem. PMID:26317195

  11. TIRCIS: Hyperspectral Thermal Infrared Imaging Using a Small-Satellite Compliant Fourier-Transform Imaging Spectrometer, for Natural Hazard Applications

    NASA Astrophysics Data System (ADS)

    Wright, R.; Lucey, P. G.; Crites, S.; Garbeil, H.; Wood, M.

    2015-12-01

    Many natural hazards, including wildfires, volcanic eruptions, and, from the perspective of climate-related hazards, urban heat islands, could be better quantified via the routine availability of hyperspectral thermal infrared remote sensing data from orbit. However, no sensors are currently in operation that provide such data at high-to-moderate spatial resolution (e.g. Landsat-class resolution). In this presentation we will describe a prototype instrument, developed using funding provided by NASA's Instrument Incubator Program, that can make these important measurements. Significantly, the instrument has been designed such that its size, mass, power, and cost are consistent with its integration into small satellite platforms, or deployment as part of small satellite constellations. The instrument, TIRCIS (Thermal Infra-Red Compact Imaging Spectrometer), uses a Fabry-Perot interferometer, an uncooled microbolometer array, and push-broom scanning to acquire hyperspectral image data cubes. Radiometric calibration is provided by blackbody targets while spectral calibration is achieved using monochromatic light sources. Neither the focal plane nor the optics need to be cooled, and the instrument has a mass of <10 kg and dimensions of 53 cm × 25 cm × 22 cm. Although the prototype has four moving parts, this can easily be reduced to one. The current optical design yields a 120 m ground sample size given an orbit of 500 km. Over the wavelength interval of 7.5 to 14 microns up to 90 spectral samples are possible, by varying the physical design of the interferometer. Our performance model indicates signal-to-noise ratios of the order of about 200 to 300:1. In this presentation we will provide an overview of the instrument design, fabrication, results from our initial laboratory characterization, and some of the application areas in which small-satellite-ready instruments such as TIRCIS could make a valuable contribution to the study of natural hazards.

  12. Fast Fourier backprojection for frequency-domain optoacoustic tomography.

    PubMed

    Mohajerani, Pouyan; Kellnberger, Stephan; Ntziachristos, Vasilis

    2014-09-15

    We present a time-efficient backprojection image reconstruction approach applied to frequency-domain (FD) optoacoustic tomography based on tissue illumination at multiple, discrete frequencies. The presented method estimates the Fourier transform of a spatial, circular profile of the underlying image using the amplitude and phase data. These data are collected over multiple frequencies using an acoustic transducer positioned at several locations around the sample. Fourier-transform values for absent frequencies are estimated using interpolation based on low-pass filtering in the image domain. Reconstruction results are presented for synthetic measurements using numerical phantoms, and the results are compared with FD model-based reconstructions.

  13. Phase Retrieval Using a Genetic Algorithm on the Systematic Image-Based Optical Alignment Testbed

    NASA Technical Reports Server (NTRS)

    Taylor, Jaime R.

    2003-01-01

    NASA s Marshall Space Flight Center s Systematic Image-Based Optical Alignment (SIBOA) Testbed was developed to test phase retrieval algorithms and hardware techniques. Individuals working with the facility developed the idea of implementing phase retrieval by breaking the determination of the tip/tilt of each mirror apart from the piston motion (or translation) of each mirror. Presented in this report is an algorithm that determines the optimal phase correction associated only with the piston motion of the mirrors. A description of the Phase Retrieval problem is first presented. The Systematic Image-Based Optical Alignment (SIBOA) Testbeb is then described. A Discrete Fourier Transform (DFT) is necessary to transfer the incoming wavefront (or estimate of phase error) into the spatial frequency domain to compare it with the image. A method for reducing the DFT to seven scalar/matrix multiplications is presented. A genetic algorithm is then used to search for the phase error. The results of this new algorithm on a test problem are presented.

  14. PRECL: A new method for interferometry imaging from closure phase

    NASA Astrophysics Data System (ADS)

    Ikeda, Shiro; Tazaki, Fumie; Akiyama, Kazunori; Hada, Kazuhiro; Honma, Mareki

    2016-06-01

    For short-wavelength VLBI observations, it is difficult to measure the phase of the visibility function accurately. The closure phases are reliable measurements under this situation, though it is not sufficient to retrieve all of the phase information. We propose a new method, phase retrieval from closure phase (PRECL). PRECL estimates all the visibility phases only from the closure phases. Combining PRECL with a sparse modeling method we have already proposed, the imaging process of VLBI does not rely on a dirty image or self-calibration. The proposed method is tested numerically and the results are promising.

  15. Built-in hyperspectral camera for smartphone in visible, near-infrared and middle-infrared lights region (first report): trial products of beans-size Fourier-spectroscopic line-imager and feasibility experimental results of middle-infrared spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Ishimaru, Ichiro; Kawashima, Natsumi; Hosono, Satsuki

    2016-05-01

    We had already proposed and reported the little-finger size hyperspectral-camera that was able to be applied to visible and infrared lights. The proposed method has been expected to be mounted on smartphones for healthcare sensors, and unmanned air vehicles such as drones for antiterrorism measures or environmental measurements. In this report, we will mention the trial product of the thumb size apparatus whose lens diameter was 5[mm]. The proposed Fourier spectroscopic imager is a kind of wavefront-division and common-path phase-shift interferometers. We installed the relative inclined phase-shifter onto optical Fourier transform plane of infinity corrected optical systems. The infinity corrected optical systems was configured with an objective lens and a cylindrical imaging lens. The relative inclined phase-shifter, what was made from a thin glass less than 0.3[mm] thick, had the wedge-prism and cuboid-glass region, because half surface of a thin glass was polished at an oblique angle of around 1[deg.]. The collimated half flux of objective beams derived from single-bright points on objective surface penetrate through the wedge prism and the cuboid glass respectively. These two beams are interfered each other and form the infererogram as spatial fringe patterns. In this case, the horizontal axis on 2-dimensional light receiving device is assigned to the amount of phase-shift. And also the vertical axis is assigned to the imaging coordinates on a line view field. Thus, by installing thin phase-shifter onto optical Fourier transform plane, the line spectroscopic imager, what obtains 1 dimensional spectral character distributions, were able to be realized.

  16. Experimental modules covering imaging, diffraction, Fourier optics and polarization based on a liquid-crystal cell SLM

    NASA Astrophysics Data System (ADS)

    Hermerschmidt, Andreas

    2009-06-01

    In close collaboration with four German universities, we have developed tutorials for experiments based on a transmissive liquid-crystal spatial light modulator (SLM). The experimental tutorials are grouped in six project modules, which cover a wide range of phenomena and have different levels of difficulty. At a basic level, students can investigate the SLM in its probably most well-known application as an image-generating element in a simple optical projector setup. At more advanced levels, the application as an adaptive optical element can be investigated in three different projects covering wave-optical phenomena. The fields covered include Fourier Optics using the SLM as a dynamic fan-out beam-splitter or kinoform, Computer-Generated Holography and basic Interferometry. For the support of these projects, software was developed which permits the generation of adaptive optical structures by the student with a user-friendly interface, while the underlying algorithms are explained in the theoretical tutorial. The modulation of the light by the twisted-neumatic liquid crystal cells of the SLM can be investigated in the two most advanced projects. In the first one, the parameters of the cell and the components of its Jones matrix can be derived from transmission measurements with rotatable polarizers at a number of different wavelengths. This project gives insight to the Jones matrix calculus at the level required for the analysis. In the second one, the complex-valued transmission of the SLM is determined by measuring the diffraction efficiency of dynamically addressed Ronchi gratings.

  17. Chemical morphology of Areca nut characterized directly by Fourier transform near-infrared and mid-infrared microspectroscopic imaging in reflection modes.

    PubMed

    Chen, Jian-Bo; Sun, Su-Qin; Zhou, Qun

    2016-12-01

    Fourier transform near-infrared (NIR) and mid-infrared (MIR) imaging techniques are essential tools to characterize the chemical morphology of plant. The transmission imaging mode is mostly used to obtain easy-to-interpret spectra with high signal-to-noise ratio. However, the native chemical compositions and physical structures of plant samples may be altered when they are microtomed for the transmission tests. For the direct characterization of thick plant samples, the combination of the reflection NIR imaging and the attenuated total reflection (ATR) MIR imaging is proposed in this research. First, the reflection NIR imaging method can explore the whole sample quickly to find out typical regions in small sizes. Next, each small typical region can be measured by the ATR-MIR imaging method to reveal the molecular structures and spatial distributions of compounds of interest. As an example, the chemical morphology of Areca nut section is characterized directly by the above approach.

  18. Real-time measurement of alveolar size and population using phase contrast x-ray imaging

    PubMed Central

    Leong, Andrew F.T.; Buckley, Genevieve A.; Paganin, David M.; Hooper, Stuart B.; Wallace, Megan J.; Kitchen, Marcus J.

    2014-01-01

    Herein a propagation-based phase contrast x-ray imaging technique for measuring particle size and number is presented. This is achieved with an algorithm that utilizes the Fourier space signature of the speckle pattern associated with the images of particles. We validate this algorithm using soda-lime glass particles, demonstrating its effectiveness on random and non-randomly packed particles. This technique is then applied to characterise lung alveoli, which are difficult to measure dynamically in vivo with current imaging modalities due to inadequate temporal resolution and/or depth of penetration and field-of-view. We obtain an important result in that our algorithm is able to measure changes in alveolar size on the micron scale during ventilation and shows the presence of alveolar recruitment/de-recruitment in newborn rabbit kittens. This technique will be useful for ventilation management and lung diagnostic procedures. PMID:25426328

  19. Quantitative evaluation of phase processing approaches in susceptibility weighted imaging

    NASA Astrophysics Data System (ADS)

    Li, Ningzhi; Wang, Wen-Tung; Sati, Pascal; Pham, Dzung L.; Butman, John A.

    2012-03-01

    Susceptibility weighted imaging (SWI) takes advantage of the local variation in susceptibility between different tissues to enable highly detailed visualization of the cerebral venous system and sensitive detection of intracranial hemorrhages. Thus, it has been increasingly used in magnetic resonance imaging studies of traumatic brain injury as well as other intracranial pathologies. In SWI, magnitude information is combined with phase information to enhance the susceptibility induced image contrast. Because of global susceptibility variations across the image, the rate of phase accumulation varies widely across the image resulting in phase wrapping artifacts that interfere with the local assessment of phase variation. Homodyne filtering is a common approach to eliminate this global phase variation. However, filter size requires careful selection in order to preserve image contrast and avoid errors resulting from residual phase wraps. An alternative approach is to apply phase unwrapping prior to high pass filtering. A suitable phase unwrapping algorithm guarantees no residual phase wraps but additional computational steps are required. In this work, we quantitatively evaluate these two phase processing approaches on both simulated and real data using different filters and cutoff frequencies. Our analysis leads to an improved understanding of the relationship between phase wraps, susceptibility effects, and acquisition parameters. Although homodyne filtering approaches are faster and more straightforward, phase unwrapping approaches perform more accurately in a wider variety of acquisition scenarios.

  20. Comparison of retinal thickness by Fourier-domain optical coherence tomography and OCT retinal image analysis software segmentation analysis derived from Stratus optical coherence tomography images

    NASA Astrophysics Data System (ADS)

    Tátrai, Erika; Ranganathan, Sudarshan; Ferencz, Mária; Debuc, Delia Cabrera; Somfai, Gábor Márk

    2011-05-01

    Purpose: To compare thickness measurements between Fourier-domain optical coherence tomography (FD-OCT) and time-domain OCT images analyzed with a custom-built OCT retinal image analysis software (OCTRIMA). Methods: Macular mapping (MM) by StratusOCT and MM5 and MM6 scanning protocols by an RTVue-100 FD-OCT device are performed on 11 subjects with no retinal pathology. Retinal thickness (RT) and the thickness of the ganglion cell complex (GCC) obtained with the MM6 protocol are compared for each early treatment diabetic retinopathy study (ETDRS)-like region with corresponding results obtained with OCTRIMA. RT results are compared by analysis of variance with Dunnett post hoc test, while GCC results are compared by paired t-test. Results: A high correlation is obtained for the RT between OCTRIMA and MM5 and MM6 protocols. In all regions, the StratusOCT provide the lowest RT values (mean difference 43 +/- 8 μm compared to OCTRIMA, and 42 +/- 14 μm compared to RTVue MM6). All RTVue GCC measurements were significantly thicker (mean difference between 6 and 12 μm) than the GCC measurements of OCTRIMA. Conclusion: High correspondence of RT measurements is obtained not only for RT but also for the segmentation of intraretinal layers between FD-OCT and StratusOCT-derived OCTRIMA analysis. However, a correction factor is required to compensate for OCT-specific differences to make measurements more comparable to any available OCT device.

  1. Optical image hiding using double-phase retrieval algorithm based on nonlinear cryptosystem under vortex beam illumination

    NASA Astrophysics Data System (ADS)

    Wang, Xiaogang; Chen, Wen; Chen, Xudong

    2015-03-01

    We propose a novel optical image hiding method based on a double-phase retrieval algorithm (DPRA) using iterative nonlinear double random phase encoding (NDRPE) in Fresnel domain under illumination of an optical vortex (OV) beam. The NDRPE-based DPRA is initially extended from the Fourier transform into the Fresnel domain, which makes the system more flexible and more compact. The proposed method has a faster convergence speed compared to its counterparts based on the linear double random phase encoding (LDRPE). A higher level of security also has been achieved by taking an OV mode as the illumination beam. Simulation results demonstrate the feasibility and security of the proposed approach.

  2. B0 insensitive multiple-quantum resolved sodium imaging using a phase-rotation scheme

    NASA Astrophysics Data System (ADS)

    Fiege, Daniel P.; Romanzetti, Sandro; Tse, Desmond H. Y.; Brenner, Daniel; Celik, Avdo; Felder, Jörg; Jon Shah, N.

    2013-03-01

    Triple-quantum filtering has been suggested as a mechanism to differentiate signals from different physiological compartments. However, the filtering method is sensitive to static field inhomogeneities because different coherence pathways may interfere destructively. Previously suggested methods employed additional phase-cycles to separately acquire pathways. Whilst this removes the signal dropouts, it reduces the signal-to-noise per unit time. In this work we suggest the use of a phase-rotation scheme to simultaneously acquire all coherence pathways and then separate them via Fourier transform. Hence the method yields single-, double- and triple-quantum filtered images. The phase-rotation requires a minimum of 36 instead of six cycling steps. However, destructive interference is circumvented whilst maintaining full signal-to-noise efficiency for all coherences.

  3. Monitoring stem cells in phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Lam, K. P.; Dempsey, K. P.; Collins, D. J.; Richardson, J. B.

    2016-04-01

    Understanding the mechanisms behind the proliferation of Mesenchymal Stem cells (MSCs) can offer a greater insight into the behaviour of these cells throughout their life cycles. Traditional methods of determining the rate of MSC differentiation rely on population based studies over an extended time period. However, such methods can be inadequate as they are unable to track cells as they interact; for example, in autologous cell therapies for osteoarthritis, the development of biological assays that could predict in vivo functional activity and biological action are particularly challenging. Here further research is required to determine non-histochemical biomarkers which provide correlations between cell survival and predictive functional outcome. This paper proposes using a (previously developed) advanced texture-based analysis algorithm to facilitate in vitro cells tracking using time-lapsed microscopy. The technique was adopted to monitor stem cells in the context of unlabelled, phase contrast imaging, with the goal of examining the cell to cell interactions in both monoculture and co-culture systems. The results obtained are analysed using established exploratory procedures developed for time series data and compared with the typical fluorescent-based approach of cell labelling. A review of the progress and the lessons learned are also presented.

  4. Resolution enhancement phase-contrast imaging by microsphere digital holography

    NASA Astrophysics Data System (ADS)

    Wang, Yunxin; Guo, Sha; Wang, Dayong; Lin, Qiaowen; Rong, Lu; Zhao, Jie

    2016-05-01

    Microsphere has shown the superiority of super-resolution imaging in the traditional 2D intensity microscope. Here a microsphere digital holography approach is presented to realize the resolution enhancement phase-contrast imaging. The system is designed by combining the microsphere with the image-plane digital holography. A microsphere very close to the object can increase the resolution by transforming the object wave from the higher frequency to the lower one. The resolution enhancement amplitude and phase images can be retrieved from a single hologram. The experiments are carried on the 1D and 2D gratings, and the results demonstrate that the observed resolution has been improved, meanwhile, the phase-contrast image is obtained. The proposed method can improve the transverse resolution in all directions based on a single exposure. Furthermore, this system has extended the application of the microsphere from the conventional 2D microscopic imaging to 3D phase-contrast microscopic imaging.

  5. Analysis and measurement of the modulation transfer function of harmonic shear wave induced phase encoding imaging.

    PubMed

    McAleavey, Stephen A

    2014-05-01

    Shear wave induced phase encoding (SWIPE) imaging generates ultrasound backscatter images of tissue-like elastic materials by using traveling shear waves to encode the lateral position of the scatters in the phase of the received echo. In contrast to conventional ultrasound B-scan imaging, SWIPE offers the potential advantages of image formation without beam focusing or steering from a single transducer element, lateral resolution independent of aperture size, and the potential to achieve relatively high lateral resolution with low frequency ultrasound. Here a Fourier series description of the phase modulated echo signal is developed, demonstrating that echo harmonics at multiples of the shear wave frequency reveal target k-space data at identical multiples of the shear wavenumber. Modulation transfer functions of SWIPE imaging systems are calculated for maximum shear wave acceleration and maximum shear constraints, and compared with a conventionally focused aperture. The relative signal-to-noise ratio of the SWIPE method versus a conventionally focused aperture is found through these calculations. Reconstructions of wire targets in a gelatin phantom using 1 and 3.5 MHz ultrasound and a cylindrical shear wave source are presented, generated from the fundamental and second harmonic of the shear wave modulation frequency, demonstrating weak dependence of lateral resolution with ultrasound frequency.

  6. Multi-oriented windowed harmonic phase reconstruction for robust cardiac strain imaging.

    PubMed

    Cordero-Grande, Lucilio; Royuela-del-Val, Javier; Sanz-Estébanez, Santiago; Martín-Fernández, Marcos; Alberola-López, Carlos

    2016-04-01

    The purpose of this paper is to develop a method for direct estimation of the cardiac strain tensor by extending the harmonic phase reconstruction on tagged magnetic resonance images to obtain more precise and robust measurements. The extension relies on the reconstruction of the local phase of the image by means of the windowed Fourier transform and the acquisition of an overdetermined set of stripe orientations in order to avoid the phase interferences from structures outside the myocardium and the instabilities arising from the application of a gradient operator. Results have shown that increasing the number of acquired orientations provides a significant improvement in the reproducibility of the strain measurements and that the acquisition of an extended set of orientations also improves the reproducibility when compared with acquiring repeated samples from a smaller set of orientations. Additionally, biases in local phase estimation when using the original harmonic phase formulation are greatly diminished by the one here proposed. The ideas here presented allow the design of new methods for motion sensitive magnetic resonance imaging, which could simultaneously improve the resolution, robustness and accuracy of motion estimates.

  7. Multi-oriented windowed harmonic phase reconstruction for robust cardiac strain imaging.

    PubMed

    Cordero-Grande, Lucilio; Royuela-del-Val, Javier; Sanz-Estébanez, Santiago; Martín-Fernández, Marcos; Alberola-López, Carlos

    2016-04-01

    The purpose of this paper is to develop a method for direct estimation of the cardiac strain tensor by extending the harmonic phase reconstruction on tagged magnetic resonance images to obtain more precise and robust measurements. The extension relies on the reconstruction of the local phase of the image by means of the windowed Fourier transform and the acquisition of an overdetermined set of stripe orientations in order to avoid the phase interferences from structures outside the myocardium and the instabilities arising from the application of a gradient operator. Results have shown that increasing the number of acquired orientations provides a significant improvement in the reproducibility of the strain measurements and that the acquisition of an extended set of orientations also improves the reproducibility when compared with acquiring repeated samples from a smaller set of orientations. Additionally, biases in local phase estimation when using the original harmonic phase formulation are greatly diminished by the one here proposed. The ideas here presented allow the design of new methods for motion sensitive magnetic resonance imaging, which could simultaneously improve the resolution, robustness and accuracy of motion estimates. PMID:26745763

  8. Quantitative characterization of chitosan in the skin by Fourier-transform infrared spectroscopic imaging and ninhydrin assay: application in transdermal sciences.

    PubMed

    Nawaz, A; Wong, T W

    2016-07-01

    The chitosan has been used as the primary excipient in transdermal particulate dosage form design. Its distribution pattern across the epidermis and dermis is not easily accessible through chemical assay and limited to radiolabelled molecules via quantitative autoradiography. This study explored Fourier-transform infrared spectroscopy imaging technique with built-in microscope as the means to examine chitosan molecular distribution over epidermis and dermis with the aid of histology operation. Fourier-transform infrared spectroscopy skin imaging was conducted using chitosan of varying molecular weights, deacetylation degrees, particle sizes and zeta potentials, obtained via microwave ligation of polymer chains at solution state. Both skin permeation and retention characteristics of chitosan increased with the use of smaller chitosan molecules with reduced acetyl content and size, and increased positive charge density. The ratio of epidermal to dermal chitosan content decreased with the use of these chitosan molecules as their accumulation in dermis (3.90% to 18.22%) was raised to a greater extent than epidermis (0.62% to 1.92%). A larger dermal chitosan accumulation nonetheless did not promote the transdermal polymer passage more than the epidermal chitosan. A small increase in epidermal chitosan content apparently could fluidize the stratum corneum and was more essential to dictate molecular permeation into dermis and systemic circulation. The histology technique aided Fourier-transform infrared spectroscopy imaging approach introduces a new dimension to the mechanistic aspect of chitosan in transdermal delivery. PMID:26695532

  9. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    SciTech Connect

    Ramamoorthy, Sripriya; Zhang, Yuan; Jacques, Steven; Petrie, Tracy; Wang, Ruikang; Nuttall, Alfred L.

    2015-12-31

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  10. Optical cryptosystem of color images using random phase masks in the fractional wavelet transform domain

    NASA Astrophysics Data System (ADS)

    Singh, Hukum

    2016-05-01

    An optical color image encryption in the Fractional Wavelet Transform (FWT) domain is carried out. The original images are segregated into three colors components: R (red), G (green) and B (blue). After that the components are encrypted separately using double random phase encoding (DRPE) in the FWT domain. Random phase masks (RPMs) are used in the input as well as in Fourier plane. The images to be encrypted are transformed with the discrete wavelet transform (DWT), the resulting coefficients from the DWT are multiplied each one by masks different form RPM. Masks are independent each other and the results are applied an inverse discrete Wavelet Transform (IDWT), obtaining the encrypted images. The input images are recovered from their corresponding encrypted images by using the correct parameters of the FWT, and its digital implementation has been performed using MATLAB 7.6.0 (R2008a). The mother wavelet family and fractional orders associated with the FWT are extra keys that access difficulty an attacker; thereby the scheme is more secure as compared to conventional techniques. The sensitivity of proposed scheme is verified with encryption parameters, occlusions, and noise attacks.

  11. Multislice and multicoil phase-sensitive inversion-recovery imaging.

    PubMed

    Ma, Jingfei

    2005-04-01

    Phase-sensitive inversion-recovery (PSIR) imaging may provide enhanced T(1) contrast. However, clinical implementation of PSIR imaging is hindered because image reconstruction with this method often lacks robustness and requires manual intervention, particularly for data acquired in multiple slices and with phased-array coils. In this paper, a new algorithm suitable for automatic PSIR image reconstruction of multislice and multicoil data is presented. This algorithm phase corrects by region-growing, employing both the magnitude and the phase information of image pixels. Specifically, phase gradients of the original complex image are first calculated and then used to determine the sequence of the region-growing. The signal direction relating to the phase error for each pixel is then determined during the region-growing using both the magnitude and the phase of the previously determined pixels that are located within a boxcar neighborhood of the pixel. Finally, the intrinsic intercoil and interslice correlation is exploited to ensure consistency in the global polarity of all of the PSIR images. The results are demonstrated with in vivo human brain images acquired at 3 Tesla with an eight-channel phased-array coil.

  12. Magnetic field induced differential neutron phase contrast imaging

    SciTech Connect

    Strobl, M.; Treimer, W.; Walter, P.; Keil, S.; Manke, I.

    2007-12-17

    Besides the attenuation of a neutron beam penetrating an object, induced phase changes have been utilized to provide contrast in neutron and x-ray imaging. In analogy to differential phase contrast imaging of bulk samples, the refraction of neutrons by magnetic fields yields image contrast. Here, it will be reported how double crystal setups can provide quantitative tomographic images of magnetic fields. The use of magnetic air prisms adequate to split the neutron spin states enables a distinction of field induced phase shifts and these introduced by interaction with matter.

  13. Variable-temperature Fourier transform near-infrared imaging spectroscopy of the deuterium/hydrogen exchange in liquid D₂O.

    PubMed

    Unger, Miriam; Ozaki, Yukihiro; Siesler, Heinz W

    2014-01-01

    In the present publication, the deuterium/hydrogen (D/H) exchange of liquid D2O exposed to water vapor of the surrounding atmosphere has been studied by variable-temperature Fourier transform near-infrared (FT-NIR) imaging spectroscopy. Apart from the visualization of the exchange process in the time-resolved FT-NIR images, kinetic parameters and the activation energy for this D/H exchange reaction have been derived from the Arrhenius plot of the variable-temperature spectroscopic data.

  14. Phase-space evolution of x-ray coherence in phase-sensitive imaging.

    PubMed

    Wu, Xizeng; Liu, Hong

    2008-08-01

    X-ray coherence evolution in the imaging process plays a key role for x-ray phase-sensitive imaging. In this work we present a phase-space formulation for the phase-sensitive imaging. The theory is reformulated in terms of the cross-spectral density and associated Wigner distribution. The phase-space formulation enables an explicit and quantitative account of partial coherence effects on phase-sensitive imaging. The presented formulas for x-ray spectral density at the detector can be used for performing accurate phase retrieval and optimizing the phase-contrast visibility. The concept of phase-space shearing length derived from this phase-space formulation clarifies the spatial coherence requirement for phase-sensitive imaging with incoherent sources. The theory has been applied to x-ray Talbot interferometric imaging as well. The peak coherence condition derived reveals new insights into three-grating-based Talbot-interferometric imaging and gratings-based x-ray dark-field imaging.

  15. Broadband Phase Retrieval for Image-Based Wavefront Sensing

    NASA Technical Reports Server (NTRS)

    Dean, Bruce H.

    2007-01-01

    A focus-diverse phase-retrieval algorithm has been shown to perform adequately for the purpose of image-based wavefront sensing when (1) broadband light (typically spanning the visible spectrum) is used in forming the images by use of an optical system under test and (2) the assumption of monochromaticity is applied to the broadband image data. Heretofore, it had been assumed that in order to obtain adequate performance, it is necessary to use narrowband or monochromatic light. Some background information, including definitions of terms and a brief description of pertinent aspects of image-based phase retrieval, is prerequisite to a meaningful summary of the present development. Phase retrieval is a general term used in optics to denote estimation of optical imperfections or aberrations of an optical system under test. The term image-based wavefront sensing refers to a general class of algorithms that recover optical phase information, and phase-retrieval algorithms constitute a subset of this class. In phase retrieval, one utilizes the measured response of the optical system under test to produce a phase estimate. The optical response of the system is defined as the image of a point-source object, which could be a star or a laboratory point source. The phase-retrieval problem is characterized as image-based in the sense that a charge-coupled-device camera, preferably of scientific imaging quality, is used to collect image data where the optical system would normally form an image. In a variant of phase retrieval, denoted phase-diverse phase retrieval [which can include focus-diverse phase retrieval (in which various defocus planes are used)], an additional known aberration (or an equivalent diversity function) is superimposed as an aid in estimating unknown aberrations by use of an image-based wavefront-sensing algorithm. Image-based phase-retrieval differs from such other wavefront-sensing methods, such as interferometry, shearing interferometry, curvature

  16. Reversible ischemia in severe stress Tc-99m-Sestamibi perfusion defects: Assessment with gated tomographic polar map Fourier amplitude and amplitude/perfusion ratio images and correlation with resting images

    SciTech Connect

    Williams, K.A.; Taillon, L.A.

    1994-05-01

    Reversible ischemia in myocardial segments with severe hypoperfusion ({le}50% of normal activity) on stress Tc-99m-Sestamibi (MIBI) images was assessed with ECG-gated tomographic (GSPECT) indices of myocardial thickening, as reflected by an increase in regional count density during systole. GSPECT bullseye plots were generated for each of 8 frames acquired after stress MIBI injection in 39 patients with coronary artery disease and at least one severe perfusion defect on summed SPECT images. Using first harmonic Fourier amplitude (AMP) and AMP to perfusion ratio (APR) images, regional myocardial systolic thickening was assessed using a 5-segment model, scored 0 to 3, for absent, minimal, mildly reduced or normal thickening. These data were regionally compared with defect reversibility assessed using a separate-day or a preceding same-day resting MIBI injection images, in which these segments were scored from 0 to 3 for absent, minimal, partial or complete defect reversibility. Of 91 severe stress defects, 16 showed absent, 18 minimal, 43 partial, and 14 complete reversibility on resting images. Both AMP and APR scores were in statistically significant agreement (p=.0218 and .0006) with resting image reversibility grades, with 79% (p=.0324) and 86% (p=.0001) agreement on the presence of reversibility on resting imaging, respectively. AMP correctly identified 89% of the reversibility defects on rest images, while the APR identified 99% (p=.0248 vs. AMP). On analysis of segment scores, the AMP slightly underestimated the degree of rest image reversibility (p=.0235), while APR images indicated more reversibility thin did resting images (p=.0092). In conclusion, GSPECT MIBI bullseye Fourier AMP images correlate well with the pattern of reversibility on resting MIBI in severe stress perfusion defects. When indexed for the degree of hypoperfusion, the Fourier images depict a greater degree of defect reversibility than resting MIBI images.

  17. Transport of intensity phase imaging in a volume holographic microscope.

    PubMed

    Waller, Laura; Luo, Yuan; Yang, Se Young; Barbastathis, George

    2010-09-01

    We demonstrate a method for single-shot quantitative phase imaging based on the transport of intensity equation (TIE) in a volume holographic microscope (VHM). The VHM system uses a multiplexed volume hologram to laterally separate images from different focal planes. This axial intensity information is then used to solve the TIE and recover object phase quantitatively. Further, we show improved phase recovery by using five multiplexed gratings in one hologram. PMID:20808383

  18. Phase contrast portal imaging for image-guided microbeam radiation therapy

    NASA Astrophysics Data System (ADS)

    Umetani, Keiji; Kondoh, Takeshi

    2014-03-01

    High-dose synchrotron microbeam radiation therapy is a unique treatment technique used to destroy tumors without severely affecting circumjacent healthy tissue. We applied a phase contrast technique to portal imaging in preclinical microbeam radiation therapy experiments. Phase contrast portal imaging is expected to enable us to obtain higherresolution X-ray images at therapeutic X-ray energies compared to conventional portal imaging. Frontal view images of a mouse head sample were acquired in propagation-based phase contrast imaging. The phase contrast images depicted edge-enhanced fine structures of the parietal bones surrounding the cerebrum. The phase contrast technique is expected to be effective in bony-landmark-based verification for image-guided radiation therapy.

  19. Polarization state demodulation of channeled imaging spectropolarimeter by phase rearrangement calibration method

    NASA Astrophysics Data System (ADS)

    Li, Qiwei; Zhang, Chunmin; Yan, Tingyu; Wei, Yutong

    2016-11-01

    The basic principle of channeled Fourier-transform imaging spectropolarimeter (CFTISP) is outlined. The two mainstream techniques existing for performing polarization state demodulation are analyzed, which show uncertainty that may not be suitable for CFTISP based on lateral shear interferometer. A modified demodulation method for Stokes parameters is described. The method separate the phase of the sign and the high-order retarders' retardations from the total phase acquired from the fast Fourier transform of the interferogram, which will not cause the amplitude error from the reference beam. Furthermore, the retardations and the residual phase error in each band introduced by instrument can be seen directly in this method. The effectiveness of this method is experimentally demonstrated with four known input states of polarization, and the results are satisfactory. The RMS error of each Stokes parameters is also presented, which demonstrates that the low spectral signal-to-noise ratio can increase the RMS error by nearly a factor of 2-5 for the individual Stokes parameters. The comparison of reconstructed results by four methods further demonstrates the effectiveness of the proposed method.

  20. Effect of coherence loss in differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Cai, Weixing; Ning, Ruola; Liu, Jiangkun

    2014-03-01

    Coherence property of x-rays is critical in the grating-based differential phase contrast (DPC) imaging because it is the physical foundation that makes any form of phase contrast imaging possible. Loss of coherence is an important experimental issue, which results in increased image noise and reduced object contrast in DPC images and DPC cone beam CT (DPC-CBCT) reconstructions. In this study, experimental results are investigated to characterize the visibility loss (a measurement of coherence loss) in several different applications, including different-sized phantom imaging, specimen imaging and small animal imaging. Key measurements include coherence loss (relative intensity changes in the area of interest in phase-stepping images), contrast and noise level in retrieved DPC images, and contrast and noise level in reconstructed DPC-CBCT images. The influence of size and composition of imaged object (uniform object, bones, skin hairs, tissues, and etc) will be quantified. The same investigation is also applied for moiré pattern-based DPC-CBCT imaging with the same exposure dose. A theoretical model is established to relate coherence loss, noise level in phase stepping images (or moiré images), and the contrast and noise in the retrieved DPC images. Experiment results show that uniform objects lead to a small coherence loss even when the attenuation is higher, while objects with large amount of small structures result in huge coherence loss even when the attenuation is small. The theoretical model predicts the noise level in retrieved DPC images, and it also suggests a minimum dose required for DPC imaging to compensate for coherence loss.

  1. Characterization of skin abnormalities in a mouse model of osteogenesis imperfecta using high resolution magnetic resonance imaging and Fourier transform infrared imaging spectroscopy.

    PubMed

    Canuto, H C; Fishbein, K W; Huang, A; Doty, S B; Herbert, R A; Peckham, J; Pleshko, N; Spencer, R G

    2012-01-01

    Evaluation of the skin phenotype in osteogenesis imperfecta (OI) typically involves biochemical measurements, such as histologic or biochemical assessment of the collagen produced from biopsy-derived dermal fibroblasts. As an alternative, the current study utilized non-invasive magnetic resonance imaging (MRI) microscopy and optical spectroscopy to define biophysical characteristics of skin in an animal model of OI. MRI of skin harvested from control, homozygous oim/oim and heterozygous oim/+ mice demonstrated several differences in anatomic and biophysical properties. Fourier transform infrared imaging spectroscopy (FT-IRIS) was used to interpret observed MRI signal characteristics in terms of chemical composition. Differences between wild-type and OI mouse skin included the appearance of a collagen-depleted lower dermal layer containing prominent hair follicles in the oim/oim mice, accounting for 55% of skin thickness in these. The MRI magnetization transfer rate was lower by 50% in this layer as compared to the upper dermis, consistent with lower collagen content. The MRI transverse relaxation time, T2, was greater by 30% in the dermis of the oim/oim mice compared to controls, consistent with a more highly hydrated collagen network. Similarly, an FT-IRIS-defined measure of collagen integrity was 30% lower in the oim/oim mice. We conclude that characterization of phenotypic differences between the skin of OI and wild-type mice by MRI and FT-IRIS is feasible, and that these techniques provide powerful complementary approaches for the analysis of the skin phenotype in animal models of disease. PMID:21845737

  2. Characterization of skin abnormalities in a mouse model of osteogenesis imperfecta using high resolution magnetic resonance imaging and Fourier transform infrared imaging spectroscopy.

    PubMed

    Canuto, H C; Fishbein, K W; Huang, A; Doty, S B; Herbert, R A; Peckham, J; Pleshko, N; Spencer, R G

    2012-01-01

    Evaluation of the skin phenotype in osteogenesis imperfecta (OI) typically involves biochemical measurements, such as histologic or biochemical assessment of the collagen produced from biopsy-derived dermal fibroblasts. As an alternative, the current study utilized non-invasive magnetic resonance imaging (MRI) microscopy and optical spectroscopy to define biophysical characteristics of skin in an animal model of OI. MRI of skin harvested from control, homozygous oim/oim and heterozygous oim/+ mice demonstrated several differences in anatomic and biophysical properties. Fourier transform infrared imaging spectroscopy (FT-IRIS) was used to interpret observed MRI signal characteristics in terms of chemical composition. Differences between wild-type and OI mouse skin included the appearance of a collagen-depleted lower dermal layer containing prominent hair follicles in the oim/oim mice, accounting for 55% of skin thickness in these. The MRI magnetization transfer rate was lower by 50% in this layer as compared to the upper dermis, consistent with lower collagen content. The MRI transverse relaxation time, T2, was greater by 30% in the dermis of the oim/oim mice compared to controls, consistent with a more highly hydrated collagen network. Similarly, an FT-IRIS-defined measure of collagen integrity was 30% lower in the oim/oim mice. We conclude that characterization of phenotypic differences between the skin of OI and wild-type mice by MRI and FT-IRIS is feasible, and that these techniques provide powerful complementary approaches for the analysis of the skin phenotype in animal models of disease.

  3. Speckle imaging algorithms for planetary imaging

    SciTech Connect

    Johansson, E.

    1994-11-15

    I will discuss the speckle imaging algorithms used to process images of the impact sites of the collision of comet Shoemaker-Levy 9 with Jupiter. The algorithms use a phase retrieval process based on the average bispectrum of the speckle image data. High resolution images are produced by estimating the Fourier magnitude and Fourier phase of the image separately, then combining them and inverse transforming to achieve the final result. I will show raw speckle image data and high-resolution image reconstructions from our recent experiment at Lick Observatory.

  4. Combined Fourier-transform infrared imaging and desorption electrospray-ionization linear ion-trap mass spectrometry for analysis of counterfeit antimalarial tablets.

    PubMed

    Ricci, Camilla; Nyadong, Leonard; Fernandez, Facundo M; Newton, Paul N; Kazarian, Sergei G

    2007-01-01

    This paper reports use of a combination of Fourier-transform infrared (FTIR) spectroscopic imaging and desorption electrospray ionization linear ion-trap mass spectrometry (DESI MS) for characterization of counterfeit pharmaceutical tablets. The counterfeit artesunate antimalarial tablets were analyzed by both techniques. The results obtained revealed the ability of FTIR imaging in non-destructive micro-attenuated total reflection (ATR) mode to detect the distribution of all components in the tablet, the identities of which were confirmed by DESI MS. Chemical images of the tablets were obtained with high spatial resolution. The FTIR spectroscopic imaging method affords inherent chemical specificity with rapid acquisition of data. DESI MS enables high-sensitivity detection of trace organic compounds. Combination of these two orthogonal surface-characterization methods has great potential for detection and analysis of counterfeit tablets in the open air and without sample preparation.

  5. Implication of on-line Fourier transform infrared detection in the separation of aromatic compounds via normal-phase liquid chromatography

    SciTech Connect

    Wachholz, S.; Geibler, H.; Bleck, J.

    1988-01-01

    Normal-phase liquid chromatography has been used to separate nitrogen heterocyclics and aromatics with polar groups which are known to be present together in solvent refined coal. The identification of the separated components was accomplished by on-line coupling of the Fourier transform infrared spectrometer as a chromatographic detector. The separation of these model compounds was carried out using Li Chrosorb NH/sub 2/ and CN in series. Chloroform was used as mobile phase. All the compounds could be identified in spite of incomplete separation in some cases. A suitable interface adapted to the different methods of HPLC and FTIR allowed the detection of about 5 ..mu..g per injected compound.

  6. Development of neutron tomography and phase contrast imaging technique

    SciTech Connect

    Kashyap, Y. S.; Agrawal, Ashish; Sarkar, P. S.; Shukla, Mayank; Sinha, Amar

    2013-02-05

    This paper presents design and development of a state of art neutron imaging technique at CIRUS reactor with special reference for techniques adopted for tomography and phase contrast imaging applications. Different components of the beamline such as collimator, shielding, sample manipulator, digital imaging system were designed keeping in mind the requirements of data acquisition time and resolution. The collimator was designed in such a way that conventional and phase contrast imaging can be done using same collimator housing. We have done characterization of fuel pins, study of hydride blisters in pressure tubes hydrogen based cells, two phase flow visualization, and online study of locomotive parts etc. using neutron tomography and radiography technique. We have also done some studies using neutron phase contrast imaging technique on this beamline.

  7. Interpretation of Line-Integrated Signals from 2-D Phase Contrast Imaging on LHD

    NASA Astrophysics Data System (ADS)

    Michael, Clive; Tanaka, Kenji; Vyacheslavov, Leonid; Sanin, Andrei; Kawahata, Kazuo; Okajima, S.

    Two dimensional (2D) phase contrast imaging (PCI) is an excellent method to measure core and edge turbulence with good spatial resolution (Δρ ˜ 0.1). General analytical consideration is given to the signal interpretation of the line-integrated signals, with specific application to images from 2D PCI. It is shown that the Fourier components of fluctuations having any non-zero component propagating along the line of sight are not detected. The ramifications of this constraint are discussed, including consideration of the angle between the sight line and flux surface normal. In the experimental geometry, at the point where the flux surfaces are tangent to the sight line, it is shown that it may be possible to detect large poloidally extended (though with small radial wavelength) structures, such as GAMS. The spatial localization technique of this diagnostic is illustrated with experimental data.

  8. Phase-retrieval ghost imaging of complex-valued objects

    SciTech Connect

    Gong Wenlin; Han Shensheng

    2010-08-15

    An imaging approach, based on ghost imaging, is reported to recover a pure-phase object or a complex-valued object. Our analytical results, which are backed up by numerical simulations, demonstrate that both the complex-valued object and its amplitude-dependent part can be separately and nonlocally reconstructed using this approach. Both effects influencing the quality of reconstructed images and methods to further improve the imaging quality are also discussed.

  9. Phase space representation of spatially partially coherent imaging.

    PubMed

    Castaneda, Roman

    2008-08-01

    The phase space representation of imaging with optical fields in any state of spatial coherence is developed by using spatial coherence wavelets. It leads to new functions for describing the optical transfer and response of imaging systems when the field is represented by Wigner distribution functions. Specific imaging cases are analyzed in this context, and special attention is devoted to the imaging of two point sources.

  10. Miniature imaging photometer. Phase 2. Technical report

    SciTech Connect

    Eather, R.H.; Lance, C.A.

    1990-07-15

    Progress is presented in the design and fabrication of a miniature imaging photometer for aurora and airglow studies. Detailed descriptions are presented of present status of optical design and fabrication, detector selection and detector housing fabrication, electronics and control system design and prototyping, selection of image analysis hardware and software, and control software development.

  11. Phase correlation imaging (PCI) for cell dynamics investigation (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Ma, Lihong; Gannavarpu, Rajshekhar; Wang, Ru; Bhaduri, Basanta; Sridharan, Shamira; Mir, Mustafa A.; Chakraborty, Arindam; Prasanth, Supriya G.; Millet, Larry; Gillette, Martha U.; Popescu, Gabriel

    2016-03-01

    We present a new method, referred to as phase correlation imaging (PCI), to study cell dynamics and function through temporal phase correlation analysis. PCI offers label-free, high-performance, simple-design, as well as suitability for operation in a conventional microscopy setting. PCI works without the need for controlled or synchronized photoactivation and sophisticated acquisition schemes, and only involves taking a sequence of phase images. The PCI image incorporates information on the phase fluctuations induced by both Brownian motion and deterministic motion of intracellular transport across large scales. We employed spatial light interference microscopy (SLIM) recently developed in our laboratory to experimentally measure quantitative phase information which renders the thickness and refractive index of cellular components without adding contrast agents. The acquisition process is repeated to obtain time-lapse phase images. We calculate the correlation time at each pixel for acquired time-lapse phase images and obtain the correlation time map in space. By temporal correlation analysis, PCI reveals cell dynamics information, which is complementary to quantitative phase imaging itself.

  12. Accurate estimators of correlation functions in Fourier space

    NASA Astrophysics Data System (ADS)

    Sefusatti, E.; Crocce, M.; Scoccimarro, R.; Couchman, H. M. P.

    2016-08-01

    Efficient estimators of Fourier-space statistics for large number of objects rely on fast Fourier transforms (FFTs), which are affected by aliasing from unresolved small-scale modes due to the finite FFT grid. Aliasing takes the form of a sum over images, each of them corresponding to the Fourier content displaced by increasing multiples of the sampling frequency of the grid. These spurious contributions limit the accuracy in the estimation of Fourier-space statistics, and are typically ameliorated by simultaneously increasing grid size and discarding high-frequency modes. This results in inefficient estimates for e.g. the power spectrum when desired systematic biases are well under per cent level. We show that using interlaced grids removes odd images, which include the dominant contribution to aliasing. In addition, we discuss the choice of interpolation kernel used to define density perturbations on the FFT grid and demonstrate that using higher order interpolation kernels than the standard Cloud-In-Cell algorithm results in significant reduction of the remaining images. We show that combining fourth-order interpolation with interlacing gives very accurate Fourier amplitudes and phases of density perturbations. This results in power spectrum and bispectrum estimates that have systematic biases below 0.01 per cent all the way to the Nyquist frequency of the grid, thus maximizing the use of unbiased Fourier coefficients for a given grid size and greatly reducing systematics for applications to large cosmological data sets.

  13. Non-interferometric quantitative phase imaging of yeast cells

    NASA Astrophysics Data System (ADS)

    Poola, Praveen K.; Pandiyan, Vimal Prabhu; John, Renu

    2015-12-01

    Real-time imaging of live cells is quite difficult without the addition of external contrast agents. Various methods for quantitative phase imaging of living cells have been proposed like digital holographic microscopy and diffraction phase microscopy. In this paper, we report theoretical and experimental results of quantitative phase imaging of live yeast cells with nanometric precision using transport of intensity equations (TIE). We demonstrate nanometric depth sensitivity in imaging live yeast cells using this technique. This technique being noninterferometric, does not need any coherent light sources and images can be captured through a regular bright-field microscope. This real-time imaging technique would deliver the depth or 3-D volume information of cells and is highly promising in real-time digital pathology applications, screening of pathogens and staging of diseases like malaria as it does not need any preprocessing of samples.

  14. Kernel Phase and Kernel Amplitude in Fizeau Imaging

    NASA Astrophysics Data System (ADS)

    Pope, Benjamin J. S.

    2016-09-01

    Kernel phase interferometry is an approach to high angular resolution imaging which enhances the performance of speckle imaging with adaptive optics. Kernel phases are self-calibrating observables that generalize the idea of closure phases from non-redundant arrays to telescopes with arbitrarily shaped pupils, by considering a matrix-based approximation to the diffraction problem. In this paper I discuss the recent fhistory of kernel phase, in particular in the matrix-based study of sparse arrays, and propose an analogous generalization of the closure amplitude to kernel amplitudes. This new approach can self-calibrate throughput and scintillation errors in optical imaging, which extends the power of kernel phase-like methods to symmetric targets where amplitude and not phase calibration can be a significant limitation, and will enable further developments in high angular resolution astronomy.

  15. Adaptive optics and phase diversity imaging for responsive space applications.

    SciTech Connect

    Smith, Mark William; Wick, David Victor

    2004-11-01

    The combination of phase diversity and adaptive optics offers great flexibility. Phase diverse images can be used to diagnose aberrations and then provide feedback control to the optics to correct the aberrations. Alternatively, phase diversity can be used to partially compensate for aberrations during post-detection image processing. The adaptive optic can produce simple defocus or more complex types of phase diversity. This report presents an analysis, based on numerical simulations, of the efficiency of different modes of phase diversity with respect to compensating for specific aberrations during post-processing. It also comments on the efficiency of post-processing versus direct aberration correction. The construction of a bench top optical system that uses a membrane mirror as an active optic is described. The results of characterization tests performed on the bench top optical system are presented. The work described in this report was conducted to explore the use of adaptive optics and phase diversity imaging for responsive space applications.

  16. Experimental verification of phase retrieval of microbeads in high-speed phase imaging using digital holography

    NASA Astrophysics Data System (ADS)

    Matoba, Osamu; Xia, Peng; Quan, Xiangyu; Nagahama, Naoya; Tanimoto, Shunsuke; Nitta, Kouichi; Awatsuji, Yasuhiro

    2016-06-01

    One of fast measurement systems of μm-size phase objects based on digital holographic microscope with transmission geometry is presented. For building a 3D inspection system of the phase objects, the improvement of recovered phase image is discussed. Under the CW laser illumination, the movement afterimage of phase object was observed. The phase object is recovered by deconvolution filter. Experimental and numerical evaluation are presented.

  17. A new imaging technique on strength and phase of pulsatile tissue-motion in brightness-mode ultrasonogram

    NASA Astrophysics Data System (ADS)

    Fukuzawa, Masayuki; Yamada, Masayoshi; Nakamori, Nobuyuki; Kitsunezuka, Yoshiki

    2007-03-01

    A new imaging technique has been developed for observing both strength and phase of pulsatile tissue-motion in a movie of brightness-mode ultrasonogram. The pulsatile tissue-motion is determined by evaluating the heartbeat-frequency component in Fourier transform of a series of pixel value as a function of time at each pixel in a movie of ultrasonogram (640x480pixels/frame, 8bit/pixel, 33ms/frame) taken by a conventional ultrasonograph apparatus (ATL HDI5000). In order to visualize both the strength and the phase of the pulsatile tissue-motion, we propose a pulsatile-phase image that is obtained by superimposition of color gradation proportional to the motion phase on the original ultrasonogram only at which the motion strength exceeds a proper threshold. The pulsatile-phase image obtained from a cranial ultrasonogram of normal neonate clearly reveals that the motion region gives good agreement with the anatomical shape and position of the middle cerebral artery and the corpus callosum. The motion phase is fluctuated with the shape of arteries revealing local obstruction of blood flow. The pulsatile-phase images in the neonates with asphyxia at birth reveal decreases of the motion region and increases of the phase fluctuation due to the weakness and local disturbance of blood flow, which is useful for pediatric diagnosis.

  18. Image fusion in x-ray differential phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Haas, W.; Polyanskaya, M.; Bayer, F.; Gödel, K.; Hofmann, H.; Rieger, J.; Ritter, A.; Weber, T.; Wucherer, L.; Durst, J.; Michel, T.; Anton, G.; Hornegger, J.

    2012-02-01

    Phase-contrast imaging is a novel modality in the field of medical X-ray imaging. The pioneer method is the grating-based interferometry which has no special requirements to the X-ray source and object size. Furthermore, it provides three different types of information of an investigated object simultaneously - absorption, differential phase-contrast and dark-field images. Differential phase-contrast and dark-field images represent a completely new information which has not yet been investigated and studied in context of medical imaging. In order to introduce phase-contrast imaging as a new modality into medical environment the resulting information about the object has to be correctly interpreted. The three output images reflect different properties of the same object the main challenge is to combine and visualize these data in such a way that it diminish the information explosion and reduce the complexity of its interpretation. This paper presents an intuitive image fusion approach which allows to operate with grating-based phase-contrast images. It combines information of the three different images and provides a single image. The approach is implemented in a fusion framework which is aimed to support physicians in study and analysis. The framework provides the user with an intuitive graphical user interface allowing to control the fusion process. The example given in this work shows the functionality of the proposed method and the great potential of phase-contrast imaging in medical practice.

  19. Fourier analysis of RGB fringe-projection profilometry and robust phase-demodulation methods against crosstalk distortion.

    PubMed

    Padilla, Moises; Servin, Manuel; Garnica, Guillermo

    2016-07-11

    In this paper, we apply the frequency transfer function formalism to analyze the red, green and blue (RGB) phase-shifting fringe-projection profilometry technique. The phase-shifted patterns in RGB fringe projection are typically corrupted by crosstalk because the sensitivity curves of most projection-recording systems overlap. This crosstalk distortion needs to be compensated in order to obtain high quality measurements. We study phase-demodulation methods for null/mild, moderate, and severe levels of RGB crosstalk. For null/mild crosstalk distortion, we can estimate the searched phase-map using Bruning's 3-step phase-shifting algorithm (PSA). For moderate crosstalk, the recorded data is usually preprocessed before feeding it into the PSA; alternatively, in this paper we propose a computationally more efficient approach, which combines linear crosstalk compensation with the phase-demodulation algorithm. For severe RGB crosstalk, we expect non-sinusoidal fringes' profiles (distorting harmonics) and a significant uncertainty on the linear crosstalk calibration (which produces pseudo-detuning error). Analyzing these distorting phenomena, we conclude that squeezing interferometry is the most robust demodulation method for RGB fringe-projection techniques. Finally, we support our conclusions with numerical simulations and experimental results. PMID:27410817

  20. Phase-sensitive X-ray imager

    DOEpatents

    Baker, Kevin Louis

    2013-01-08

    X-ray phase sensitive wave-front sensor techniques are detailed that are capable of measuring the entire two-dimensional x-ray electric field, both the amplitude and phase, with a single measurement. These Hartmann sensing and 2-D Shear interferometry wave-front sensors do not require a temporally coherent source and are therefore compatible with x-ray tubes and also with laser-produced or x-pinch x-ray sources.

  1. Phase contrast image segmentation using a Laue analyser crystal

    NASA Astrophysics Data System (ADS)

    Kitchen, Marcus J.; Paganin, David M.; Uesugi, Kentaro; Allison, Beth J.; Lewis, Robert A.; Hooper, Stuart B.; Pavlov, Konstantin M.

    2011-02-01

    Dual-energy x-ray imaging is a powerful tool enabling two-component samples to be separated into their constituent objects from two-dimensional images. Phase contrast x-ray imaging can render the boundaries between media of differing refractive indices visible, despite them having similar attenuation properties; this is important for imaging biological soft tissues. We have used a Laue analyser crystal and a monochromatic x-ray source to combine the benefits of both techniques. The Laue analyser creates two distinct phase contrast images that can be simultaneously acquired on a high-resolution detector. These images can be combined to separate the effects of x-ray phase, absorption and scattering and, using the known complex refractive indices of the sample, to quantitatively segment its component materials. We have successfully validated this phase contrast image segmentation (PCIS) using a two-component phantom, containing an iodinated contrast agent, and have also separated the lungs and ribcage in images of a mouse thorax. Simultaneous image acquisition has enabled us to perform functional segmentation of the mouse thorax throughout the respiratory cycle during mechanical ventilation.

  2. Imaging of Phase Objects using Partially Coherent Illumination

    SciTech Connect

    Ravizza, F. L.

    2013-01-01

    Screening high-power laser optics for light intensifying phase objects that cause laserinduced damage on downstream optics is critical to sustaining laser operation. Identifying such flaws on large-apertures is quite challenging since they are relatively small and invisible to conventional inspection methods. A Linescan Phase Differential Imaging (LPDI) system was developed to rapidly identify these flaws on large-aperture optics within a single full-aperture dark-field image. We describe a two-step production phase object screening process consisting of LPDI mapping and image analysis, followed by high-resolution interferometry and propagation based evaluation of the downstream damage potential of identified flaws. An image simulation code capable of modeling the LPDI partially coherent illumination was used to optimize its phase object sensitivity.

  3. An imaging Fourier transform spectroradiometer with a multi-element photodetector for the spectral range of 7-14 μm

    NASA Astrophysics Data System (ADS)

    Bashkin, S. V.; Karfidov, A. O.; Kornienko, V. N.; Lel'kov, M. V.; Mironov, A. I.; Morozov, A. N.; Svetlichnyi, S. I.; Tabalin, S. E.; Fufurin, I. L.

    2016-09-01

    The construction and principle of operation of a imaging Fourier transform infrared spectroradiometer (FTIR spectrometer) equipped with a cooled 32-area photodetector designed for spectral analysis of open atmospheric paths are considered. The main technical characteristics of the Fourier spectrometer are reported. The technique of visualization of the detected vapor cloud is described. The results of field experiments using the imaging FTIR spectrometer are shown. Based on these results, the dynamics of motion of the cloud of material has been investigated, its angular and linear velocities have been estimated, and data on propagation of the cloud of material and change in its angular sizes in air have been obtained. A technique for analyzing data provided by two FTIR spectrometers is given, based on which one can estimate the size of the cloud and the distance to it from each device. It is shown that the results of detection of the cloud of material by the imaging FTIR spectrometer can be used to predict the propagation of material under study in space.

  4. Noninterferometric quantitative phase imaging with soft x rays.

    PubMed

    Allman, B E; McMahon, P J; Tiller, J B; Nugent, K A; Paganin, D; Barty, A

    2000-10-01

    We demonstrate quantitative noninterferometric x-ray phase-amplitude measurement. We present results from two experimental geometries. The first geometry uses x rays diverging from a point source to produce high-resolution holograms of submicrometer-sized objects. The measured phase of the projected image agrees with the geometrically determined phase to within +/-7%. The second geometry uses a direct imaging microscope setup that allows the formation of a magnified image with a zone-plate lens. Here a direct measure of the object phase is made and agrees with that of the magnified object to better than +/-10%. In both cases the accuracy of the phase is limited by the pixel resolution.

  5. Motion-compensated hand-held common-path Fourier-domain optical coherence tomography probe for image-guided intervention

    NASA Astrophysics Data System (ADS)

    Huang, Yong; Song, Cheol; Liu, Xuan; Kang, Jin U.

    2013-03-01

    A motion-compensated hand-held common-path Fourier-domain optical coherence tomography imaging probe has been developed for image guided intervention during microsurgery. A hand-held prototype instrument was designed and fabricated by integrating an imaging fiber probe inside a stainless steel needle which is attached to the ceramic shaft of a piezoelectric motor housed in an aluminum handle. The fiber probe obtains A-scan images. The distance information was extracted from the A-scans to track the sample surface distance and a fixed distance was maintained by a feedback motor control which effectively compensated hand tremor and target movements in the axial direction. Graphical user interface, real-time data processing, and visualization based on a CPU-GPU hybrid programming architecture were developed and used in the implantation of this system. To validate the system, free-hand optical coherence tomography images using various samples were obtained. The system can be easily integrated into microsurgical tools and robotics for a wide range of clinical applications. Such tools could offer physicians the freedom to easily image sites of interest with reduced risk and higher image quality.

  6. Phase estimation for magnetic resonance imaging near metal prostheses

    NASA Astrophysics Data System (ADS)

    Bones, Philip J.; King, Laura J.; Millane, Rick P.

    2015-09-01

    Magnetic resonance imaging (MRI) has the potential to be the best technique for assessing complications in patients with metal orthopedic implants. The presence of fat can obscure definition of the other soft tissues in MRI images, so fat suppression is often required. However, the performance of existing fat suppression techniques is inadequate near implants, due to very significant magnetic field perturbations induced by the metal. The three-point Dixon technique is potentially a method of choice as it is able to suppress fat in the presence of inhomogeneities, but the success of this technique depends on being able to accurately calculate the phase shift. This is generally done using phase unwrapping and/or iterative reconstruction algorithms. Most current phase unwrapping techniques assume that the phase function is slowly varying and phase differences between adjacent points are limited to less than π radians in magnitude. Much greater phase differences can be present near metal implants. We present our experience with two phase unwrapping techniques which have been adapted to use prior knowledge of the implant. The first method identifies phase discontinuities before recovering the phase along paths through the image. The second method employs a transform to find the least squares solution to the unwrapped phase. Simulation results indicate that the methods show promise.

  7. Motionless phase stepping in X-ray phase contrast imaging with a compact source

    PubMed Central

    Miao, Houxun; Chen, Lei; Bennett, Eric E.; Adamo, Nick M.; Gomella, Andrew A.; DeLuca, Alexa M.; Patel, Ajay; Morgan, Nicole Y.; Wen, Han

    2013-01-01

    X-ray phase contrast imaging offers a way to visualize the internal structures of an object without the need to deposit significant radiation, and thereby alleviate the main concern in X-ray diagnostic imaging procedures today. Grating-based differential phase contrast imaging techniques are compatible with compact X-ray sources, which is a key requirement for the majority of clinical X-ray modalities. However, these methods are substantially limited by the need for mechanical phase stepping. We describe an electromagnetic phase-stepping method that eliminates mechanical motion, thus removing the constraints in speed, accuracy, and flexibility. The method is broadly applicable to both projection and tomography imaging modes. The transition from mechanical to electromagnetic scanning should greatly facilitate the translation of X-ray phase contrast techniques into mainstream applications. PMID:24218599

  8. On-line vapor-phase generation followed by Fourier-transform infrared spectrometry for the quantitative analysis of water-soluble penicillin G in pharmaceutical formulations.

    PubMed

    Sadeghi, Mahdi; Zeeb, Mohsen; Kalaee, Mohammad R

    2010-01-01

    The combination of vapor-phase generation (VPG) and Fourier-transform infrared (FTIR) spectrometry was performed as an alternative analytical technique for the determination of water-soluble penicillin G (PENG). Samples were transferred into a heated reactor, and a potassium iodate solution was injected into the reactor. Carbon monoxide (CO) generated under these conditions was carried via a N(2) gas carrier stream inside the IR gas cell, and the corresponding FTIR spectra were continuously recorded as a function of time. Analytical measurements were made using the maximum absorbance of the CO band at 2170 +/- 4 cm(-1). Various factors influencing the analytical signals were evaluated and selected. The figures of merit of the proposed method involve a linear calibration curve over the range of 3 to 320 mg L(-1), a limit of detection of 0.5 mg L(-1) and a precision of 2.6%. The method was successfully applied to PENG determination in pharmaceutical preparations.

  9. Two dimensional vibrations of the guinea pig apex organ of Corti measured in vivo using phase sensitive Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Ramamoorthy, Sripriya; Zhang, Yuan; Petrie, Tracy; Fridberger, Anders; Ren, Tianying; Wang, Ruikang; Jacques, Steven L.; Nuttall, Alfred L.

    2015-02-01

    In this study, we measure the in vivo apical-turn vibrations of the guinea pig organ of Corti in both axial and radial directions using phase-sensitive Fourier domain optical coherence tomography. The apical turn in guinea pig cochlea has best frequencies around 100 - 500 Hz which are relevant for human speech. Prior measurements of vibrations in the guinea pig apex involved opening the otic capsule, which has been questioned on the basis of the resulting changes to cochlear hydrodynamics. Here this limitation is overcome by measuring the vibrations through bone without opening the otic capsule. Furthermore, we have significantly reduced the surgery needed to access the guinea pig apex in the axial direction by introducing a miniature mirror inside the bulla. The method and preliminary data are discussed in this article.

  10. Phase 2 N01 Program - Cancer Imaging Program

    Cancer.gov

    The Phase 2 N01 Program is a CTEP-CIP collaboration includes 7 contractors, most of whom consist of multi-institutional consortia, and includes a total of 22 NCI-designated Cancer Centers. These sites carry out early clinical trials with CTEP and CIP-held IND agents, with an emphasis on phase 2 trials, but including phase 1 trials as well. These trials include the evaluation of novel imaging agents and methods to enhance the evaluation of novel therapeutics.

  11. Quantitative phase-sensitive imaging in a transmission electron microscope

    PubMed

    Bajt; Barty; Nugent; McCartney; Wall; Paganin

    2000-05-01

    This paper presents a new technique for forming quantitative phase and amplitude electron images applicable to a conventional transmission electron microscope. With magnetised cobalt microstructures used as a test object, we use electron holography to obtain an independent measurement of the phase shift. After a suitable calibration of the microscope, we obtain quantitative agreement of the phase shift imposed on the 200 keV electrons passing through the sample.

  12. Semiconductor defect metrology using laser-based quantitative phase imaging

    NASA Astrophysics Data System (ADS)

    Zhou, Renjie; Edwards, Chris; Popescu, Gabriel; Goddard, Lynford

    2015-03-01

    A highly sensitive laser-based quantitative phase imaging tool, using an epi-illumination diffraction phase microscope, has been developed for silicon wafer defect inspection. The first system used a 532 nm solid-state laser and detected 20 nm by 100 nm by 110 nm defects in a 22 nm node patterned silicon wafer. The second system, using a 405 nm diode laser, is more sensitive and has enabled detection of 15 nm by 90 nm by 35 nm defects in a 9 nm node densely patterned silicon wafer. In addition to imaging, wafer scanning and image-post processing are also crucial for defect detection.

  13. Triple-phase bone image abnormalities in Lyme arthritis

    SciTech Connect

    Brown, S.J.; Dadparvar, S.; Slizofski, W.J.; Glab, L.B.; Burger, M. )

    1989-10-01

    Arthritis is a frequent manifestation of Lyme disease. Limited triple-phase Tc-99m MDP bone imaging of the wrists and hands with delayed whole-body images was performed in a patient with Lyme arthritis. This demonstrated abnormal joint uptake in the wrists and hands in all three phases, with increased activity seen in other affected joints on delayed whole-body images. These findings are nonspecific and have been previously described in a variety of rheumatologic conditions, but not in Lyme disease. Lyme disease should be considered in the differential diagnosis of articular and periarticular bone scan abnormalities.

  14. Motion-compensated hand-held common-path Fourier-domain optical coherence tomography probe for image-guided intervention

    PubMed Central

    Huang, Yong; Liu, Xuan; Song, Cheol; Kang, Jin U.

    2012-01-01

    A motion-compensated, hand-held, common-path, Fourier-domain optical coherence tomography imaging probe has been developed for image-guided intervention during microsurgery. A hand-held prototype instrument was achieved by integrating an imaging fiber probe inside a stainless steel needle and attached to the ceramic shaft of a piezoelectric motor housed in an aluminum handle. The fiber probe obtains A-scan images. The distance information was extracted from the A-scans to track the sample surface distance and a fixed distance was maintained by a feedback motor control which effectively compensated hand tremor and target movements in the axial direction. Real-time data acquisition, processing, motion compensation, and image visualization and saving were implemented on a custom CPU-GPU hybrid architecture. We performed 10× zero padding to the raw spectrum to obtain 0.16 µm position accuracy with a compensation rate of 460 Hz. The root-mean-square error of hand-held distance variation from target position was measured to be 2.93 µm. We used a cross-correlation maximization-based shift correction algorithm for topology correction. To validate the system, we performed free-hand OCT M-scan imaging using various samples. PMID:23243562

  15. Phase Sensitive Cueing for 3D Objects in Overhead Images

    SciTech Connect

    Paglieroni, D W; Eppler, W G; Poland, D N

    2005-02-18

    A 3D solid model-aided object cueing method that matches phase angles of directional derivative vectors at image pixels to phase angles of vectors normal to projected model edges is described. It is intended for finding specific types of objects at arbitrary position and orientation in overhead images, independent of spatial resolution, obliqueness, acquisition conditions, and type of imaging sensor. It is shown that the phase similarity measure can be efficiently evaluated over all combinations of model position and orientation using the FFT. The highest degree of similarity over all model orientations is captured in a match surface of similarity values vs. model position. Unambiguous peaks in this surface are sorted in descending order of similarity value, and the small image thumbnails that contain them are presented to human analysts for inspection in sorted order.

  16. Complex direct comb spectroscopy with a virtually imaged phased array.

    PubMed

    Scholten, Sarah K; Anstie, James D; Hébert, Nicolas Bourbeau; White, Richard T; Genest, Jérôme; Luiten, Andre N

    2016-03-15

    We demonstrate a simple interferometric technique to directly measure the complex optical transmittance over a large spectral range using a frequency-comb spectrometer based on a virtually imaged phased array. A Michelson interferometer encodes the phase deviations induced by a sample contained in one of its arms into an interferogram image. When combined with an additional image taken from each arm separately, along with a frequency-calibration image, this allows full reconstruction of the sample's optical transfer function. We demonstrate the technique with a vapor cell containing H13C14N, producing transmittance and phase spectra spanning 2.9 THz (∼23  nm) with ∼1 GHz resolution.

  17. Overlapped Fourier coding for optical aberration removal

    PubMed Central

    Horstmeyer, Roarke; Ou, Xiaoze; Chung, Jaebum; Zheng, Guoan; Yang, Changhuei

    2014-01-01

    We present an imaging procedure that simultaneously optimizes a camera’s resolution and retrieves a sample’s phase over a sequence of snapshots. The technique, termed overlapped Fourier coding (OFC), first digitally pans a small aperture across a camera’s pupil plane with a spatial light modulator. At each aperture location, a unique image is acquired. The OFC algorithm then fuses these low-resolution images into a full-resolution estimate of the complex optical field incident upon the detector. Simultaneously, the algorithm utilizes redundancies within the acquired dataset to computationally estimate and remove unknown optical aberrations and system misalignments via simulated annealing. The result is an imaging system that can computationally overcome its optical imperfections to offer enhanced resolution, at the expense of taking multiple snapshots over time. PMID:25321982

  18. Bessel Fourier Orientation Reconstruction (BFOR): an analytical diffusion propagator reconstruction for hybrid diffusion imaging and computation of q-space indices.

    PubMed

    Hosseinbor, A Pasha; Chung, Moo K; Wu, Yu-Chien; Alexander, Andrew L

    2013-01-01

    The ensemble average propagator (EAP) describes the 3D average diffusion process of water molecules, capturing both its radial and angular contents. The EAP can thus provide richer information about complex tissue microstructure properties than the orientation distribution function (ODF), an angular feature of the EAP. Recently, several analytical EAP reconstruction schemes for multiple q-shell acquisitions have been proposed, such as diffusion propagator imaging (DPI) and spherical polar Fourier imaging (SPFI). In this study, a new analytical EAP reconstruction method is proposed, called Bessel Fourier Orientation Reconstruction (BFOR), whose solution is based on heat equation estimation of the diffusion signal for each shell acquisition, and is validated on both synthetic and real datasets. A significant portion of the paper is dedicated to comparing BFOR, SPFI, and DPI using hybrid, non-Cartesian sampling for multiple b-value acquisitions. Ways to mitigate the effects of Gibbs ringing on EAP reconstruction are also explored. In addition to analytical EAP reconstruction, the aforementioned modeling bases can be used to obtain rotationally invariant q-space indices of potential clinical value, an avenue which has not yet been thoroughly explored. Three such measures are computed: zero-displacement probability (Po), mean squared displacement (MSD), and generalized fractional anisotropy (GFA).

  19. Bessel Fourier Orientation Reconstruction (BFOR): An Analytical Diffusion Propagator Reconstruction for Hybrid Diffusion Imaging and Computation of q-Space Indices

    PubMed Central

    Hosseinbor, A. Pasha; Chung, Moo K.; Wu, Yu-Chien; Alexander, Andrew L.

    2012-01-01

    The ensemble average propagator (EAP) describes the 3D average diffusion process of water molecules, capturing both its radial and angular contents. The EAP can thus provide richer information about complex tissue microstructure properties than the orientation distribution function (ODF), an angular feature of the EAP. Recently, several analytical EAP reconstruction schemes for multiple q-shell acquisitions have been proposed, such as diffusion propagator imaging (DPI) and spherical polar Fourier imaging (SPFI). In this study, a new analytical EAP reconstruction method is proposed, called Bessel Fourier orientation reconstruction (BFOR), whose solution is based on heat equation estimation of the diffusion signal for each shell acquisition, and is validated on both synthetic and real datasets. A significant portion of the paper is dedicated to comparing BFOR, SPFI, and DPI using hybrid, non-Cartesian sampling for multiple b-value acquisitions. Ways to mitigate the effects of Gibbs ringing on EAP reconstruction are also explored. In addition to analytical EAP reconstruction, the aforementioned modeling bases can be used to obtain rotationally invariant q-space indices of potential clinical value, an avenue which has not yet been thoroughly explored. Three such measures are computed: zero-displacement probability (Po), mean squared displacement (MSD), and generalized fractional anisotropy (GFA). PMID:22963853

  20. Variable-temperature Fourier transform near-infrared (FT-NIR) Imaging spectroscopy of the diffusion process of butanol(OD) into polyamide 11.

    PubMed

    Unger, Miriam; Ozaki, Yukihiro; Siesler, Heinz W

    2011-09-01

    Time-resolved Fourier transform near-infrared (FT-NIR) spectroscopic imaging was applied to the diffusion process of butanol(OD) into polyamide 11 (PA11) with a novel sheet-structured variable-temperature-controlled sample holder in order to demonstrate the significant differences of diffusion rate below and above the glass transition temperature of PA11. The diffusant butanol(OD) was chosen for two reasons: (1) it allows the diffusion front to be monitored by the intensity decrease of a NH-specific absorption band of PA11 due to the NH/ND isotope exchange and (2) under the measurement conditions the diffusion of butanol(OD) into PA11 takes place in an experimentally manageable time frame. Apart from the in situ visualization of the diffusion front in the time-resolved FT-NIR images, the type of diffusion and the diffusion coefficient of butanol(OD) into PA11 have been determined.