Science.gov

Sample records for fragments production due

  1. Comparison of calculations of fragment production

    SciTech Connect

    Canavan, G.H.

    1998-01-01

    This note compares estimates of fragment production rates in debris collisions through calculations performed with consistent debris distribution functions implicit in integrated collision frequencies provided by Attachment A. Differences between estimates of fragment production rates in space debris collisions are shown to be due primarily to different choices of the exponent in the fragment production function and the distinction between catastrophic and all collisions. Sensitivity to the fragment production parameter over the range of values consistent with experimental data is discussed.

  2. High Fragmentation Steel Production Process

    DTIC Science & Technology

    1984-01-01

    phase of the project entailed the purchase and metallurgical characterization of two heats of HF-1 steel from different vendors. Performed by...At>-A 13^ nzt AD AD-E401 117 CONTRACTOR REPORT ARLCD-CR-83049 HIGH FRAGMENTATION STEEL PRODUCTION PROCESS ^"fP-PTTMirj A 1 James F. Kane...Report 6. PERFORMING ORG. REPORT NUMBER High Fragmentation Steel Production Process 7. AUTHORfs; James F. Kane, Ronald L. Kivak, Colin C. MacCrindle

  3. Asymmetry effects in fragment production

    NASA Astrophysics Data System (ADS)

    Kaur, Manpreet; Kaur, Varinderjit

    2016-05-01

    The production of different fragments has been studied by taking into account the mass asymmetry of the reaction and employing the momentum dependent interactions. Two different set of asymmetric reactions have been analyzed while keeping Atotal fixed using soft momentum dependent equation of state. Our results indicate that the impact of momentum dependent interactions is different in lighter projectile systems as compared to heavier ones. The comparative analysis of IQMD simulations with the experimental data in case of heavier projectile and lighter target system for the reaction of 197Au+27Al (η = 0.7) at E = 600 MeV/nucleon shows that with the inclusion of MDI we are able, upto some extent, to reproduce the experimental universality of rise and fall of intermediate mass fragments (IMFs).

  4. Transition from fractal cracking to fragmentation due to projectile penetration

    NASA Astrophysics Data System (ADS)

    Kun, F.; Halász, Z.

    2014-12-01

    We present a theoretical study of the fracture of two-dimensional disc-shaped samples due to the penetration of a projectile focusing on the dynamics of fracturing and on the geometrical structure of the generated crack pattern. The penetration of a cone is simulated into a plate of circular shape using a discrete element model of heterogeneous brittle materials varying the speed of penetration in a broad range. As the cone penetrates a destroyed zone is created from which cracks run to the external boundary of the plate. Computer simulations revealed that in the low speed limit of loading two cracks are generated with nearly straight shape. Increasing the penetration speed the crack pattern remains regular, however, both the number of cracks and their fractal dimension increases. High speed penetration gives rise to a crack network such that the sample gets fragmented into a large number of pieces. We give a quantitative analysis of the evolution of the system from simple cracking through fractal cracks to fragmentation with a connected crack network. Simulations showed that in the low speed limit of loading the growing cracks proceed in discrete jumps separated by periods when the crack tips are pinned. The statistics of the size of jumps and of the waitng times shows scale free behaviour, i.e. power law distributions are obtained with universal exponents. Dependence on the loading speed was pointed out only for the cutoffs of the distributions. In the high speed limit of loading the sample falls apart forming a large number of fragments. The size of fragments proved to be power law distributed where dependence on the loading speed is observed only for the cutoffs. The value of the exponent has good agreement with experiments.

  5. High Fragmentation Steel Production Process

    DTIC Science & Technology

    1981-08-01

    particles caused by slack quench, or small carbide due to insufficient austenitizing time (fig. 29). Test 2 These white areas and the low mechanical...L J F CKD . APPO. Chamberlain Ctamtariain Manufacturing Corporation Scranton Army Ammunition Piant BILLET z) A A O ex iMM DATE 3...Chamberlain Manufacturing Corporation Scranton Army Ammunition Plant TITLE BILLET 5i X 5i 1BA DRN. L J F CKD . APPO. 173 DATf 3 ZZ. Bl SCALE

  6. High Explosive Deonation Threshold Sensitivity Due to Multiple Fragment Impacts

    SciTech Connect

    Georgevich, V; Pincosy, P; Chase, J

    2004-01-07

    Fragments, bullets or projectiles can initiate a detonation in a high explosive (HE). For this to happen certain critical conditions need to be exceeded. For a given explosive, these critical conditions are the projectile velocity, the projectile size and shape, and the projectile material properties. A lot of work has been done in the area of metal shaped charge jets and individual fragments impacting the HE. One major gap in understanding initiation phenomena is the effect of multiple fragment impact. This study shows that multiple fragments can lower the fragment size and the kinetic energy thresholds.

  7. Energy production using fission fragment rockets

    SciTech Connect

    Chapline, G.; Matsuda, Y.

    1991-08-01

    Fission fragment rockets are nuclear reactors with a core consisting of thin fibers in a vacuum, and which use magnetic fields to extract the fission fragments from the reactor core. As an alternative to ordinary nuclear reactors, fission fragment rockets would have the following advantages: Approximately twice as efficient if one can directly convert the fission fragment energy into electricity; by reducing the buildup of a fission fragment inventory in the reactor one could avoid a Chernobyl type disaster; and collecting the fission fragments outside the reactor could simplify the waste disposal problem. 6 refs., 4 figs., 2 tabs.

  8. Oxygen-containing fragments in natural products.

    PubMed

    Titarenko, Zoya; Vasilevich, Natalya; Zernov, Vladimir; Kirpichenok, Michael; Genis, Dmitry

    2013-02-01

    An analysis of the chemical environment of the oxygen atoms in the DNP database compared to the CMC and SCD databases was performed. Some structural clusters were identified which are predominant among the natural products and can be considered as distinctive features of NPs. Fifty-three oxygen-containing structural fragments that are distinctive for the DNP (distinctive set of fragments DSF) in comparison with the SCD have been identified. A new descriptor Mc was introduced for describing the ratio of atoms involved in the DSF to the total number of heavy atoms. A significant difference in the Mc values among the reference databases allowed the use of a specific cluster of the DSF as a tool for performing similarity searches for oxygen-containing NP molecules, or for evaluation or comparison of databases according to their NP-likeness. An example illustrating that the suggested approach could allow not only estimating the NP-likeness, but also serve as a tool for designing new NP-like compounds is provided. The suggested approach for NP-likeness evaluation moves away from the traditional ideas of scaffolds, cycles, linkers and substituents.

  9. Construction of a 3D-shaped, natural product like fragment library by fragmentation and diversification of natural products.

    PubMed

    Prescher, Horst; Koch, Guido; Schuhmann, Tim; Ertl, Peter; Bussenault, Alex; Glick, Meir; Dix, Ina; Petersen, Frank; Lizos, Dimitrios E

    2017-02-01

    A fragment library consisting of 3D-shaped, natural product-like fragments was assembled. Library construction was mainly performed by natural product degradation and natural product diversification reactions and was complemented by the identification of 3D-shaped, natural product like fragments available from commercial sources. In addition, during the course of these studies, novel rearrangements were discovered for Massarigenin C and Cytochalasin E. The obtained fragment library has an excellent 3D-shape and natural product likeness, covering a novel, unexplored and underrepresented chemical space in fragment based drug discovery (FBDD).

  10. Investigation of Biomechanical Response Due to Fragment Impact on Ballistic Protective Helmet.

    DTIC Science & Technology

    1998-03-01

    Investigation of Biomechanical Response Due to Fragment Impact on Ballistic Protective Helmet 5. FUNDING NUMBERS 6. AUTHOR( S ) King, Quinten M 7...fragments traveling in excess of 2000 ft/ s (609 m/ s ). However, these strides have also exposed the body to greater impact energies without a...development of personnel body armor capable of preventing penetration of fragments traveling in excess of 2000 ft/ s (609 m/ s ). However these strides have

  11. {J}/{ψ} production via fragmentation at HERA

    NASA Astrophysics Data System (ADS)

    Godbole, R. M.; Roy, D. P.; Sridhar, K.

    1996-02-01

    We compute the contributions to large- p T{J}/{ψ} production at DHEA coming from fragmentation of gluons and charm quarks. We find that the charm quark fragmentation contribution dominates over the direct production of {J}/{ψ} via photongluon fusion at large- p T, while the gluon fragmentation is negligibly small over the whole range of pT. An experimental study of pT distributions of {J}/{ψ} at HERA will providea direct probe of the charm quark fragmentation functions.

  12. Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals

    PubMed Central

    Gupte, Tejas M.

    2015-01-01

    During the cell cycle, mitochondria undergo regulated changes in morphology. Two particularly interesting events are first, mitochondrial hyperfusion during the G1-S transition and second, fragmentation during entry into mitosis. The mitochondria remain fragmented between late G2- and mitotic exit. This mitotic mitochondrial fragmentation constitutes a checkpoint in some cell types, of which little is known. We bypass the ‘mitotic mitochondrial fragmentation’ checkpoint by inducing fragmented mitochondrial morphology and then measure the effect on cell cycle progression. Using Drosophila larval hemocytes, Drosophila S2R+ cell and cells in the pouch region of wing imaginal disc of Drosophila larvae we show that inhibiting mitochondrial fusion, thereby increasing fragmentation, causes cellular hyperproliferation and an increase in mitotic index. However, mitochondrial fragmentation due to over-expression of the mitochondrial fission machinery does not cause these changes. Our experiments suggest that the inhibition of mitochondrial fusion increases superoxide radical content and leads to the upregulation of cyclin B that culminates in the observed changes in the cell cycle. We provide evidence for the importance of mitochondrial superoxide in this process. Our results provide an insight into the need for mitofusin-degradation during mitosis and also help in understanding the mechanism by which mitofusins may function as tumor suppressors. PMID:26000631

  13. Microbials for the production of monoclonal antibodies and antibody fragments

    PubMed Central

    Spadiut, Oliver; Capone, Simona; Krainer, Florian; Glieder, Anton; Herwig, Christoph

    2014-01-01

    Monoclonal antibodies (mAbs) and antibody fragments represent the most important biopharmaceutical products today. Because full length antibodies are glycosylated, mammalian cells, which allow human-like N-glycosylation, are currently used for their production. However, mammalian cells have several drawbacks when it comes to bioprocessing and scale-up, resulting in long processing times and elevated costs. By contrast, antibody fragments, that are not glycosylated but still exhibit antigen binding properties, can be produced in microbial organisms, which are easy to manipulate and cultivate. In this review, we summarize recent advances in the expression systems, strain engineering, and production processes for the three main microbials used in antibody and antibody fragment production, namely Saccharomyces cerevisiae, Pichia pastoris, and Escherichia coli. PMID:24183828

  14. Natural-product-derived fragments for fragment-based ligand discovery

    NASA Astrophysics Data System (ADS)

    Over, Björn; Wetzel, Stefan; Grütter, Christian; Nakai, Yasushi; Renner, Steffen; Rauh, Daniel; Waldmann, Herbert

    2013-01-01

    Fragment-based ligand and drug discovery predominantly employs sp2-rich compounds covering well-explored regions of chemical space. Despite the ease with which such fragments can be coupled, this focus on flat compounds is widely cited as contributing to the attrition rate of the drug discovery process. In contrast, biologically validated natural products are rich in stereogenic centres and populate areas of chemical space not occupied by average synthetic molecules. Here, we have analysed more than 180,000 natural product structures to arrive at 2,000 clusters of natural-product-derived fragments with high structural diversity, which resemble natural scaffolds and are rich in sp3-configured centres. The structures of the cluster centres differ from previously explored fragment libraries, but for nearly half of the clusters representative members are commercially available. We validate their usefulness for the discovery of novel ligand and inhibitor types by means of protein X-ray crystallography and the identification of novel stabilizers of inactive conformations of p38α MAP kinase and of inhibitors of several phosphatases.

  15. Capturing Biological Activity in Natural Product Fragments by Chemical Synthesis

    PubMed Central

    Crane, Erika A.

    2016-01-01

    Abstract Natural products have had an immense influence on science and have directly led to the introduction of many drugs. Organic chemistry, and its unique ability to tailor natural products through synthesis, provides an extraordinary approach to unlock the full potential of natural products. In this Review, an approach based on natural product derived fragments is presented that can successfully address some of the current challenges in drug discovery. These fragments often display significantly reduced molecular weights, reduced structural complexity, a reduced number of synthetic steps, while retaining or even improving key biological parameters such as potency or selectivity. Examples from various stages of the drug development process up to the clinic are presented. In addition, this process can be leveraged by recent developments such as genome mining, antibody–drug conjugates, and computational approaches. All these concepts have the potential to identify the next generation of drug candidates inspired by natural products. PMID:26833854

  16. Capturing Biological Activity in Natural Product Fragments by Chemical Synthesis.

    PubMed

    Crane, Erika A; Gademann, Karl

    2016-03-14

    Natural products have had an immense influence on science and have directly led to the introduction of many drugs. Organic chemistry, and its unique ability to tailor natural products through synthesis, provides an extraordinary approach to unlock the full potential of natural products. In this Review, an approach based on natural product derived fragments is presented that can successfully address some of the current challenges in drug discovery. These fragments often display significantly reduced molecular weights, reduced structural complexity, a reduced number of synthetic steps, while retaining or even improving key biological parameters such as potency or selectivity. Examples from various stages of the drug development process up to the clinic are presented. In addition, this process can be leveraged by recent developments such as genome mining, antibody-drug conjugates, and computational approaches. All these concepts have the potential to identify the next generation of drug candidates inspired by natural products.

  17. Enhanced multiparametric hyaluronan degradation for production of molar-mass-defined fragments.

    PubMed

    Holubova, Lucie; Korecka, Lucie; Podzimek, Stepan; Moravcova, Veronika; Rotkova, Jana; Ehlova, Tereza; Velebny, Vladimir; Bilkova, Zuzana

    2014-11-04

    Hyaluronic acid (HA) is known to serve as a dynamic mediator intervening in many physiological functions. Its specific effect has been repeatedly confirmed to be strongly influenced by the molecular size of hyaluronan fragments. However common technological approaches of HA fragments production have their limitations. In many cases, the final products do not meet the strict pharmaceutical requirements, specifically due to size polydispersity and reaction contaminants. We present novel methodology based on combination of unique incidental ability of the plant-derived protease papain to split the glycosidic bonds and an indispensable advantages of biocompatible macroporous material with incorporated ferrous ions serving as carrier for covalent papain fixation. This atypical and yet unpublished highly efficient multiparametric approach allows enhanced HA fragmentation for easily and safely producing molar-mass-defined HA fragments with narrow size distribution. Native polyacrylamide gel electrophoresis (PAGE) and size exclusion chromatography/multi-angle light scattering (SEC-MALS) confirmed the effectiveness of our multiparametric approach.

  18. Poisoning due to common household products.

    PubMed

    Chan, T Y; Leung, K P; Critchley, J A

    1995-06-01

    From 1988 to 1992, 187 patients were admitted in four general medical wards at the Prince of Wales Hospital, Hong Kong with poisoning due to common household products. The main agents involved included "Dettol" liquid (46%), cleaning products (19%), pesticides (14%), and shampoos (10%). The majority of patients had only relatively mild symptoms. Ingestion of Dettol liquid and strong corrosives tended to be associated with serious complications and deaths. Two patients died after aspiration of Dettol liquid and detergent before and/or during gastric lavage. One other patient died after swallowing sulphuric acid. As with all poisoning, it is very important that the airway is adequately protected before gastric lavage is performed.

  19. West Germany's first North Sea production due

    SciTech Connect

    Bleakley, W.B.

    1986-05-01

    Deutsche Texaco A.G. will be the first operator on behalf of itself and Wintershall A.G. to produce oil from the German sector of the North Sea, with its first oil due end of 1986 from the Mittelplate pilot project. Texaco also was the first to produce oil from the Baltic Sea when Schwedeneck-See field, near Kiel Bay, went on production last year. The pilot project at Mittelplate will yield more data on the reservoirs confirmed by four wells drilled in 1980-1981, and will be carried out in spite of adverse operating conditions. Problems facing Texaco engineers in their project design include: A mud-flat location dry at low tide but submerged at high tide. Efforts to convince environmental groups that no permanent harm would result from company activities. Shipment of low-gravity crude containing asphaltenes. Logistics of transporting equipment and supplies on a schedule dictated by tides.

  20. Fragmentation due to centrifugal forces in the photodissociation of H{sub 2}{sup +} in intense laser fields

    SciTech Connect

    Fischer, Michael; Schmidt, Ruediger; Lorenz, Ulf; Schmidt, Burkhard

    2011-09-15

    By means of quantum-dynamical and classical trajectory calculations of H{sub 2}{sup +} photodissociation in strong laser fields, it is shown that for certain combinations of pulse durations and intensities the rotational dynamics can lead to fragmentation. In that case, the photofragments exhibit characteristic angular distributions. The classical calculations provide a transparent physical picture of this mechanism which is also very well established in collisions between atomic nuclei or liquid droplets: nonrotating systems are stable, whereas rotating systems fragment due to the decrease of the fragmentation barrier with increasing angular momentum.

  1. Large-scale production of palindrome DNA fragments

    SciTech Connect

    Palmer, E.L.; Gewiess, A.; Harp, J.M.

    1995-10-10

    Our structural studies of nucleosomes necessitated the production of over 100 mg of a 146-bp perfect palindrome DNA for use in the reconstitution of perfectly symmetrical nucleosome core particles for detailed X-ray crystallographic analysis. The propagation of palindromic DNA sequences by bacterial culture is hindered by the instability of these sequences during bacterial replication and recombination. While the loss of some palindrome sequences can be elminated by the use of sbcB or sbcC mutants of Escherichia coli, not all palindrome-containing plasmids are faithfully maintained by these strains. The production of large quantities of palindrome DNA can therefore be extremely difficult. After trying several approaches, we were able to develop a reliable procedure for production of large quantities of palindrome DNA that involves production of plasmid containing multiple copies of the repeating unit of the palindrome which are isolated by restriction digestion and ligated in vitro to form the palindrome DNA. The procedure has resulted in the production of over 20 mg of a 146-bp DNA fragment in 2 weeks.

  2. Occupational deaths due to penetrating chest injuries from sledgehammer fragments: two case reports and review of the literature.

    PubMed

    Smith, Michael E; Zumwalt, Ross

    2004-03-01

    Occupational deaths due to projectiles from hand tools are rare. We report 2 unusual cases of individuals killed by metallic projectiles produced by the fragmentation of the head of a sledgehammer. At initial examination, these wounds appear similar to atypical gunshot or stab wounds. Proper evaluation requires radiographic examination, scene correlation, and, when possible, comparison of metallic fragments retrieved at autopsy and tools from the scene.

  3. LISE++: Exotic beam production with fragment separators and their design

    NASA Astrophysics Data System (ADS)

    Tarasov, O. B.; Bazin, D.

    2016-06-01

    Since the LISE++ code presentation at the EMIS 2007 conference (Tarasov and Bazin, 2008), important improvements have been made in the analytical and Monte Carlo calculations of transmission, and accuracy of reaction product distributions. In this paper new features of the code in ion-beam optics, creation of new LISE++ blocks, and development of some reaction models will be discussed. Large progress has been done in ion-beam optics with the introduction of "elemental" blocks, that allows optical matrices calculation within LISE++. New type of configurations based on these blocks allow a detailed analysis of the transmission, useful for fragment separator design, and can be used for optics optimization based on user constraints.

  4. Prediction of initiation of low and high explosive fillers due to fragment or projectile impact

    NASA Technical Reports Server (NTRS)

    Zabel, P. H.; Parr, V. B.

    1980-01-01

    A methodology is presented which provides predictions for the probability of initiation of explosion in high explosive filled warheads and in propellant filled rocket motor cases given the impact of compact fragments or of small projectiles. Equations of velocities at which 50 percent of the explosive filled cases will initiate either high or low order are developed for compact fragments, and for projectiles. These data are used to establish the standard deviation of the data from the 50 percent initiation line. Standard deviation is used to provide predictions of the probability of initiation given the impact velocity and other pertinent parameters using equations and logic which are established in a computer model. This computer model uses fragment material properties and encounter parameters to predict fragment impact initiation, and projectile and casing material properties and encounter parameters to predict projectile impact initiation.

  5. Thermokarst Rates Intensify Due to Climate Change and Forest Fragmentation in an Alaskan Boreal Forest Lowland

    NASA Astrophysics Data System (ADS)

    Lara, M. J.; Genet, H.; McGuire, A. D.; Euskirchen, E. S.; Zhang, Y.; Brown, D. N.; Jorgenson, T.; Romanovsky, V. E.; Breen, A. L.; Bolton, W. R.

    2015-12-01

    Lowland boreal forest ecosystems in Alaska are dominated by wetlands comprised of a complex mosaic of fens, collapse scar-bogs, low shrub/scrub, and forests growing on elevated ice rich permafrost soils. Thermokarst has affected the lowlands of the Tanana Flats in central Alaska for centuries, as thawing permafrost collapses forests that transition to wetlands. Located within the discontinuous permafrost zone, this region has significantly warmed over the past half-century, and much of these carbon-rich permafrost soils are now within ~0.5o C of thawing. Increases in the collapse of lowland boreal forests in response to warming may have consequences for the climate system. This study evaluates the trajectories and potential drivers of 60 years of forest change in a landscape subjected to permafrost thaw in unburned dominant forest types (paper birch and black spruce) associated with location on elevated permafrost plateau and across multiple time periods (1949, 1978, 1986, 1998 and 2009) using historical and contemporary aerial and satellite images for change detection. We developed (i) a deterministic statistical model to evaluate the potential climatic controls on forest change using gradient boosting and regression tree analysis, and (ii) a 30x30 m land cover map of the Tanana Flats to estimate the potential landscape-level losses of forest area due to thermokarst from 1949 to 2009. Over the 60-year period, we observed a nonlinear loss of birch forests and a relatively continuous gain of spruce forest associated with thermokarst and forest succession, respectively. Gradient boosting and regression tree models identify precipitation and forest fragmentation as the primary factors controlling birch and spruce forest change, respectively. Between 1950-2009 landscape-level analysis estimates a transition of ~15 km² of birch forest area to wetlands on the Tanana Flats, where the greatest change followed warm periods. This work highlights the vulnerability of lowland

  6. Thermokarst rates intensify due to climate change and forest fragmentation in an Alaskan boreal forest lowland.

    PubMed

    Lara, Mark J; Genet, Hélène; McGuire, Anthony D; Euskirchen, Eugénie S; Zhang, Yujin; Brown, Dana R N; Jorgenson, Mark T; Romanovsky, Vladimir; Breen, Amy; Bolton, William R

    2016-02-01

    Lowland boreal forest ecosystems in Alaska are dominated by wetlands comprised of a complex mosaic of fens, collapse-scar bogs, low shrub/scrub, and forests growing on elevated ice-rich permafrost soils. Thermokarst has affected the lowlands of the Tanana Flats in central Alaska for centuries, as thawing permafrost collapses forests that transition to wetlands. Located within the discontinuous permafrost zone, this region has significantly warmed over the past half-century, and much of these carbon-rich permafrost soils are now within ~0.5 °C of thawing. Increased permafrost thaw in lowland boreal forests in response to warming may have consequences for the climate system. This study evaluates the trajectories and potential drivers of 60 years of forest change in a landscape subjected to permafrost thaw in unburned dominant forest types (paper birch and black spruce) associated with location on elevated permafrost plateau and across multiple time periods (1949, 1978, 1986, 1998, and 2009) using historical and contemporary aerial and satellite images for change detection. We developed (i) a deterministic statistical model to evaluate the potential climatic controls on forest change using gradient boosting and regression tree analysis, and (ii) a 30 × 30 m land cover map of the Tanana Flats to estimate the potential landscape-level losses of forest area due to thermokarst from 1949 to 2009. Over the 60-year period, we observed a nonlinear loss of birch forests and a relatively continuous gain of spruce forest associated with thermokarst and forest succession, while gradient boosting/regression tree models identify precipitation and forest fragmentation as the primary factors controlling birch and spruce forest change, respectively. Between 1950 and 2009, landscape-level analysis estimates a transition of ~15 km² or ~7% of birch forests to wetlands, where the greatest change followed warm periods. This work highlights that the vulnerability and resilience of

  7. Growth and productivity impacts of periplasmic nuclease expression in an Escherichia coli Fab' fragment production strain.

    PubMed

    Nesbeth, Darren N; Perez-Pardo, Miguel-Angel; Ali, Shaukat; Ward, John; Keshavarz-Moore, Eli

    2012-02-01

    Host cell engineering is becoming a realistic option in whole bioprocess strategies to maximize product manufacturability. High molecular weight (MW) genomic DNA currently hinders bioprocessing of Escherichia coli by causing viscosity in homogenate feedstocks. We previously showed that co-expressing Staphylococcal nuclease and human Fab' fragment in the periplasm of E. coli enables auto-hydrolysis of genomic DNA upon cell disruption, with a consequent reduction in feedstock viscosity and improvement in clarification performance. Here we report the impact of periplasmic nuclease expression on stability of DNA and Fab' fragment in homogenates, host-strain growth kinetics, cell integrity at harvest and Fab' fragment productivity. Nuclease and Fab' plasmids were shown to exert comparable levels of growth burden on the host W3110 E. coli strain. Nuclease co-expression did not compromise either the growth performance or volumetric yield of the production strain. 0.5 g/L Fab' fragment (75 L scale) and 0.7 g/L (20 L scale) was achieved for both unmodified and cell-engineered production strains. Unexpectedly, nuclease-modified cells achieved maximum Fab' levels 8-10 h earlier than the original, unmodified production strain. Scale-down studies of homogenates showed that nuclease-mediated hydrolysis of high MW DNA progressed to completion within minutes of homogenization, even when homogenates were chilled on ice, with no loss of Fab' product and no need for additional co-factors or buffering.

  8. Predictable allele frequency changes due to habitat fragmentation in the Glanville fritillary butterfly.

    PubMed

    Fountain, Toby; Nieminen, Marko; Sirén, Jukka; Wong, Swee Chong; Hanski, Ilkka

    2016-03-08

    Describing the evolutionary dynamics of now extinct populations is challenging, as their genetic composition before extinction is generally unknown. The Glanville fritillary butterfly has a large extant metapopulation in the Åland Islands in Finland, but declined to extinction in the nearby fragmented southwestern (SW) Finnish archipelago in the 20th century. We genotyped museum samples for 222 SNPs across the genome, including SNPs from candidate genes and neutral regions. SW Finnish populations had significantly reduced genetic diversity before extinction, and their allele frequencies gradually diverged from those in contemporary Åland populations over 80 y. We identified 15 outlier loci among candidate SNPs, mostly related to flight, in which allele frequencies have changed more than the neutral expectation. At outlier loci, allele frequencies in SW Finland shifted in the same direction as newly established populations deviated from old local populations in contemporary Åland. Moreover, outlier allele frequencies in SW Finland resemble those in fragmented landscapes as opposed to continuous landscapes in the Baltic region. These results indicate selection for genotypes associated with good colonization capacity in the highly fragmented landscape before the extinction of the populations. Evolutionary response to habitat fragmentation may have enhanced the viability of the populations, but it did not save the species from regional extinction in the face of severe habitat loss and fragmentation. These results highlight a potentially common situation in changing environments: evolutionary changes are not strong enough to fully compensate for the direct adverse effects of environmental change and thereby rescue populations from extinction.

  9. Thermokarst rates intensify due to climate change and forest fragmentation in an Alaskan boreal forest lowland

    USGS Publications Warehouse

    Lara, M.; Genet, Helene; McGuire, Anthony; Euskirchen, Eugénie S.; Zhang, Yujin; Brown, Dana R. N.; Jorgenson, M.T.; Romanovsky, V.; Breen, Amy L.; Bolton, W.R.

    2016-01-01

    Lowland boreal forest ecosystems in Alaska are dominated by wetlands comprised of a complex mosaic of fens, collapse-scar bogs, low shrub/scrub, and forests growing on elevated ice-rich permafrost soils. Thermokarst has affected the lowlands of the Tanana Flats in central Alaska for centuries, as thawing permafrost collapses forests that transition to wetlands. Located within the discontinuous permafrost zone, this region has significantly warmed over the past half-century, and much of these carbon-rich permafrost soils are now within ~0.5 °C of thawing. Increased permafrost thaw in lowland boreal forests in response to warming may have consequences for the climate system. This study evaluates the trajectories and potential drivers of 60 years of forest change in a landscape subjected to permafrost thaw in unburned dominant forest types (paper birch and black spruce) associated with location on elevated permafrost plateau and across multiple time periods (1949, 1978, 1986, 1998, and 2009) using historical and contemporary aerial and satellite images for change detection. We developed (i) a deterministic statistical model to evaluate the potential climatic controls on forest change using gradient boosting and regression tree analysis, and (ii) a 30 × 30 m land cover map of the Tanana Flats to estimate the potential landscape-level losses of forest area due to thermokarst from 1949 to 2009. Over the 60-year period, we observed a nonlinear loss of birch forests and a relatively continuous gain of spruce forest associated with thermokarst and forest succession, while gradient boosting/regression tree models identify precipitation and forest fragmentation as the primary factors controlling birch and spruce forest change, respectively. Between 1950 and 2009, landscape-level analysis estimates a transition of ~15 km² or ~7% of birch forests to wetlands, where the greatest change followed warm periods. This work highlights that the vulnerability and resilience of

  10. Computational Hydrocode Study of Target Damage due to Fragment-Blast Impact

    SciTech Connect

    Hatch-Aguilar, T; Najjar, F; Szymanski, E

    2011-03-24

    A target's terminal ballistic effects involving explosively generated fragments, along with the original blast, are of critical importance for many different security and safety related applications. Personnel safety and protective building design are but a few of the practical disciplines that can gain from improved understanding combined loading effects. Traditionally, any engineering level analysis or design effort involving explosions would divide the target damage analysis into two correspondingly critical areas: blast wave and fragment related impact effects. The hypothesis of this paper lies in the supposition that a linear combination of a blast-fragment loading, coupled with an accurate target response description, can lead to a non-linear target damage effect. This non-linear target response could then stand as the basis of defining what a synergistic or combined frag-blast loading might actually look like. The table below, taken from Walters, et. al. categorizes some of the critical parameters driving any combined target damage effect and drives the evaluation of results. Based on table 1 it becomes clear that any combined frag-blast analysis would need to account for the target response matching similar ranges for the mechanics described above. Of interest are the critical times upon which a blast event or fragment impact loading occurs relative to the target's modal response. A blast, for the purposes of this paper is defined as the sudden release of chemical energy from a given material (henceforth referred to as an energetic material) onto its surrounding medium. During the coupling mechanism a discrete or discontinuous shockwave is generated. This shockwave travels outward from the source transferring energy and momentum to any surrounding objects including personnel and engineering structures. From an engineering perspective blast effects are typically characterized by way of physical characteristics such as Peak Pressure (PP), Time of Arrival (TOA

  11. Predictable allele frequency changes due to habitat fragmentation in the Glanville fritillary butterfly

    PubMed Central

    Fountain, Toby; Nieminen, Marko; Sirén, Jukka; Wong, Swee Chong; Lehtonen, Rainer; Hanski, Ilkka

    2016-01-01

    Describing the evolutionary dynamics of now extinct populations is challenging, as their genetic composition before extinction is generally unknown. The Glanville fritillary butterfly has a large extant metapopulation in the Åland Islands in Finland, but declined to extinction in the nearby fragmented southwestern (SW) Finnish archipelago in the 20th century. We genotyped museum samples for 222 SNPs across the genome, including SNPs from candidate genes and neutral regions. SW Finnish populations had significantly reduced genetic diversity before extinction, and their allele frequencies gradually diverged from those in contemporary Åland populations over 80 y. We identified 15 outlier loci among candidate SNPs, mostly related to flight, in which allele frequencies have changed more than the neutral expectation. At outlier loci, allele frequencies in SW Finland shifted in the same direction as newly established populations deviated from old local populations in contemporary Åland. Moreover, outlier allele frequencies in SW Finland resemble those in fragmented landscapes as opposed to continuous landscapes in the Baltic region. These results indicate selection for genotypes associated with good colonization capacity in the highly fragmented landscape before the extinction of the populations. Evolutionary response to habitat fragmentation may have enhanced the viability of the populations, but it did not save the species from regional extinction in the face of severe habitat loss and fragmentation. These results highlight a potentially common situation in changing environments: evolutionary changes are not strong enough to fully compensate for the direct adverse effects of environmental change and thereby rescue populations from extinction. PMID:26903642

  12. Fractures Due to Gunshot Wounds: Do Retained Bullet Fragments Affect Union?

    PubMed Central

    Riehl, John T.; Connolly, Keith; Haidukewych, George; Koval, Ken

    2015-01-01

    Background Many types of projectiles, including modern hollow point bullets, fragment into smaller pieces upon impact, particularly when striking bone. This study was performed to examine the effect on time to union with retained bullet material near a fracture site in cases of gunshot injury. Methods All gunshot injuries operatively treated with internal fixation at a Level 1 Trauma Center between March 2008 and August 2011 were retrospectively reviewed. Retained bullet load near the fracture site was calculated based on percentage of material retained compared to the cortical diameter of the involved bone. Analyses were performed to assess the effect of the lead-cortical ratio and amount of comminution on time to fracture union. Results Thirty-two patients (34 fractures) met the inclusion criteria, with an equal number of comminuted (17) and non-comminuted fractures (17). Seventeen of 34 fractures (50%) united within 4 months, 16/34 (47%) developed a delayed union, and 1/34 (3%) developed a nonunion requiring revision surgery. Sixteen of 17 fractures (94%) that united by 4 months had a cumulative amount of bullet fragmentation retained near the fracture site of less than 20% of the cortical diameter. Nine out of 10 fractures (90%) with retained fragments near the fracture site was equal to or exceeding 20% of the cortical diameter had delayed or nonunion. Fracture comminution had no effect on time to union. Conclusions The quantity of retained bullet material near the fracture site was more predictive of the rate of fracture union than was comminution. Fractures with bullet fragmentation equal to or exceeding 20% of the cortical width demonstrated a significantly higher rate of delayed union/nonunion compared to those fractures with less retained bullet material, which may indicate a local cytotoxic effect from lead on bone healing. These findings may influence decisions on timing of secondary surgeries. Level of Evidence Level III PMID:26361445

  13. Flow regulation and river fragmentation in large basins due to global dam development (Invited)

    NASA Astrophysics Data System (ADS)

    Grill, G. O.; Lehner, B.

    2013-12-01

    Dam construction has recently received new interest as an alternative and renewable source of energy, especially in developing countries, and as a means to provide water security in regions with naturally variable water flows. On the other hand, the negative effects from increased fragmentation of the world's large rivers through hydropower and irrigation dams is a matter of great concern for ecologists and conservationists. The main negative effects of dams result from their role as a barrier for migratory fish species, as well as the alteration of the natural flow regime owing to artificial water release schedules. While the trade-offs between these antagonistic effects are usually assessed locally by conducting environmental impact assessments at and in the vicinity of the construction site, the cumulative effects of multiple dams located in the same basin are generally neglected in such plans. To address the cumulative effects at the scale of large river networks, we developed a new impact assessment approach by combining state-of-the-art global scale hydrographic (HydroSHEDS) and hydrological models (WaterGAP) with a river routing scheme (HydroROUT). This combination enables modelers to simulate scenarios for historic, current and future conditions that allow for comparisons between the large river basins of the world. We derive indices that can describe the relative impact of individual and multiple dams regarding flow alteration and habitat fragmentation at a global scale. Our model also allows for the application of tailor-made weighting schemes to include information of eco-hydrological classifications, as well as species richness and diversity. Furthermore, we include natural barriers such as waterfalls, and examine their effect on river network connectivity. Results for the Greater Mekong Region show that ecosystem connectivity and flow alteration are most strongly affected by dams located at the mainstream rivers, particularly for basins where the main

  14. Production of rare isotope beams with the NSCL fragment separator

    NASA Astrophysics Data System (ADS)

    Stolz, A.; Baumann, T.; Ginter, T. N.; Morrissey, D. J.; Portillo, M.; Sherrill, B. M.; Steiner, M.; Stetson, J. W.

    2005-12-01

    Rare isotope beams at the National Superconducting Cyclotron Laboratory are produced by projectile fragmentation of medium energy primary beams on beryllium targets. The fragments of interest are selected by the A1900 high-acceptance fragment separator. The A1900 consists of superconducting magnets: four 45° dipoles and eight quadrupole triplets with a maximum magnetic rigidity of 6 Tm. A momentum acceptance of Δp/p = 5% with a solid angle acceptance of ΔΩ = 8 msr makes the A1900 one of the highest-acceptance separators in the world. Detector systems installed within the device allow tracking and unambiguous identification of individual isotopes. During the first three years of operation of the A1900, more than 200 different rare isotope beams approaching both the neutron and proton driplines have been delivered to experiments.

  15. Methods for producing partially digested restriction DNA fragments and for producing a partially modified PCR product

    DOEpatents

    Wong, Kwong-Kwok

    2000-01-01

    The present invention is an improved method of making a partially modified PCR product from a DNA fragment with a polymerase chain reaction (PCR). In a standard PCR process, the DNA fragment is combined with starting deoxynucleoside triphosphates, a primer, a buffer and a DNA polymerase in a PCR mixture. The PCR mixture is then reacted in the PCR producing copies of the DNA fragment. The improvement of the present invention is adding an amount of a modifier at any step prior to completion of the PCR process thereby randomly and partially modifying the copies of the DNA fragment as a partially modified PCR product. The partially modified PCR product may then be digested with an enzyme that cuts the partially modified PCR product at unmodified sites thereby producing an array of DNA restriction fragments.

  16. Access to photon fragmentation functions in hadronic jet production

    NASA Astrophysics Data System (ADS)

    Kaufmann, Tom; Mukherjee, Asmita; Vogelsang, Werner

    2016-06-01

    We argue that the process p p →(jet γ )X , for which a photon is observed inside a fully reconstructed jet and is treated as part of the jet, offers new probes of the so far little-known fragmentation functions for photons. We present a next-to-leading-order QCD calculation of the cross section for this process in the limit that the jet is relatively narrow. We also investigate the background resulting from the two-photon decay of neutral pions. We present numerical results relevant for possible measurements at the LHC and at RHIC. These suggest that p p →(jet γ )X should provide clean access to the photon fragmentation functions, provided an efficient suppression of the background is available in experiment.

  17. The production of antibody fragments and antibody fusion proteins by yeasts and filamentous fungi

    PubMed Central

    Joosten, Vivi; Lokman, Christien; van den Hondel, Cees AMJJ; Punt, Peter J

    2003-01-01

    In this review we will focus on the current status and views concerning the production of antibody fragments and antibody fusion proteins by yeasts and filamentous fungi. We will focus on single-chain antibody fragment production (scFv and VHH) by these lower eukaryotes and the possible applications of these proteins. Also the coupling of fragments to relevant enzymes or other components will be discussed. As an example of the fusion protein strategy, the 'magic bullet' approach for industrial applications, will be highlighted. PMID:12605725

  18. Identification of Corrosion Products Due to Seawater and Fresh Water

    NASA Astrophysics Data System (ADS)

    Gismelseed, A.; Elzain, M.; Yousif, A.; Al Rawas, A.; Al-Omari, I. A.; Widatallah, H.; Rais, A.

    2004-12-01

    Mössbauer and X-ray diffraction (XRD) measurements were performed on corrosion products extracted from the inner surface of two different metal tubes used in a desalination plant in Oman. One of the tubes corroded due to the seawater while the second was corroded due to fresh water. The corrosion products thus resulted due to seawater were scrapped off in to two layers, the easily removable rust from the top is termed outer surface corrosion product and the strongly adhered rust as internal corrosion product. The Mössbauer spectra together with the XRD pattern of the outer surface showed the presence of magnetite (Fe3O4), akaganeite (β-FeOOH), lepidocrocite (γ-FeOOH), goethite (α-FeOOH) and hematite (Fe2O3). The inner surface however showed the presence of akaganite, goethite, and magnetite. On the other hand, the corrosion products due to the fresh water showed only the presence of goethite and magnetite. The mechanism of the corrosion process will be discussed based on the significant differences between the formation of the iron components of the corrosion products due to seawater and the fresh water.

  19. How are particle production, nucleon emission and target fragment evaporation processes interrelated in hadron-nucleus collisions?

    NASA Technical Reports Server (NTRS)

    Strugalski, Z.

    1985-01-01

    Relations between particle production, nucleon emission, and fragment evaporation processes were searched for in hadron-nucleus collisions. It was stated that: (1) the nucleon emission and target fragment evaporation proceed independently of the particle production process; and (2) relation between multiplicities of the emitted protons and of the evaporated charged fragments is expressed by simple formula.

  20. The SPIDER fission fragment spectrometer for fission product yield measurements

    SciTech Connect

    Meierbachtol, K.; Tovesson, F.; Shields, D.; Arnold, C.; Blakeley, R.; Bredeweg, T.; Devlin, M.; Hecht, A. A.; Heffern, L. E.; Jorgenson, J.; Laptev, A.; Mader, D.; O׳Donnell, J. M.; Sierk, A.; White, M.

    2015-04-01

    We developed the SPectrometer for Ion DEtermination in fission Research (SPIDER) for measuring mass yield distributions of fission products from spontaneous and neutron-induced fission. The 2E–2v method of measuring the kinetic energy (E) and velocity (v) of both outgoing fission products has been utilized, with the goal of measuring the mass of the fission products with an average resolution of 1 atomic mass unit (amu). Moreover, the SPIDER instrument, consisting of detector components for time-of-flight, trajectory, and energy measurements, has been assembled and tested using 229Th and 252Cf radioactive decay sources. For commissioning, the fully assembled system measured fission products from spontaneous fission of 252Cf. Individual measurement resolutions were met for time-of-flight (250 ps FWHM), spacial resolution (2 mm FHWM), and energy (92 keV FWHM for 8.376 MeV). Finally, these mass yield results measured from 252Cf spontaneous fission products are reported from an E–v measurement.

  1. The SPIDER fission fragment spectrometer for fission product yield measurements

    DOE PAGES

    Meierbachtol, K.; Tovesson, F.; Shields, D.; ...

    2015-04-01

    We developed the SPectrometer for Ion DEtermination in fission Research (SPIDER) for measuring mass yield distributions of fission products from spontaneous and neutron-induced fission. The 2E–2v method of measuring the kinetic energy (E) and velocity (v) of both outgoing fission products has been utilized, with the goal of measuring the mass of the fission products with an average resolution of 1 atomic mass unit (amu). Moreover, the SPIDER instrument, consisting of detector components for time-of-flight, trajectory, and energy measurements, has been assembled and tested using 229Th and 252Cf radioactive decay sources. For commissioning, the fully assembled system measured fission productsmore » from spontaneous fission of 252Cf. Individual measurement resolutions were met for time-of-flight (250 ps FWHM), spacial resolution (2 mm FHWM), and energy (92 keV FWHM for 8.376 MeV). Finally, these mass yield results measured from 252Cf spontaneous fission products are reported from an E–v measurement.« less

  2. Regolith production on asteroid surfaces via thermal fatigue fragmentation

    NASA Astrophysics Data System (ADS)

    Murdoch, N.; Delbo, M.; Libourel, G.; Wilkerson, J.; Michel, P.; Ramesh, K.; Ganino, C.; Verati, C.; Marchi, S.

    2014-07-01

    Classically, regolith is believed to be produced by impacts of small particles hitting asteroid surfaces. However, crater ejecta velocities are typically greater than several tens of centimetres per second [1,2], which corresponds to the gravitational escape velocity of kilometre-sized asteroids. Impact debris reaccumulation, therefore, fails to account for the ubiquitous presence of regolith on small asteroids. It is known that temperature cycles can lead to mechanical load cycles producing stresses in surface rocks. Cracks could form and propagate due to temperature variations and the resulting temperature gradients set up by the thermal cycles. Several works have suggested that such thermal fatigue may play an important role in the evolution of airless landscapes on bodies such as the Moon, Mercury, and on (433) Eros [3,4,5]. We will describe laboratory experiments and numerical modelling devoted to investigating whether thermal fatigue is active on asteroid surfaces [6]. First we calculate typical temperature variations on the surfaces of near-Earth asteroids due to the diurnal cycles. We then perform laboratory experiments of thermal cycling of meteorites --- taken as analogues of asteroid surface material --- to study under which conditions rock cracking on near-Earth asteroids (NEAs) occurs. The temperature cycle period and magnitude of the temperature excursion in the experiment thermal cycles were typical of those of NEA surfaces. Finally, using a micro-mechanical model, validated via a direct comparison to our experiments, we extrapolate our results to different cycle periods, to larger rocks and to smaller temperature variations (for example for main-belt asteroids).

  3. Improving Land Cover Product-Based Estimates of the Extent of Fragmented Cover Types

    NASA Technical Reports Server (NTRS)

    Hlavka, Christine A.; Dungan, Jennifer

    2002-01-01

    The effects of changing land use/land cover on regional and global climate ecosystems depends on accurate estimates of the extent of critical land cover types such as Arctic wetlands and fire scars in boreal forests. To address this information requirement, land cover products at coarse spatial resolution such as Advanced Very High Resolution Radiometer (AVHRR) -based maps and the MODIS Land Cover Product are being produced. The accuracy of the extent of highly fragmented cover types such as fire scars and ponds is in doubt because much (the numerous scars and ponds smaller than the pixel size) is missed. A promising method for improving areal estimates involves modeling the observed distribution of the fragment sizes as a type of truncated distribution, then estimating the sum of unobserved sizes in the lower, truncated tail and adding it to the sum of observed fragment sizes. The method has been tested with both simulated and actual cover products.

  4. Nonsinglet kaon fragmentation function from e{sup +}e{sup -} kaon production

    SciTech Connect

    Albino, Simon; Christova, Ekaterina

    2010-05-01

    We perform fits to the available charged and neutral kaon-production data in e{sup +}+e{sup -{yields}}K+X, K=K{sup {+-},} and K{sub S}{sup 0}, and determine the nonsinglet combination of kaon fragmentation functions D{sub u}{sup K{+-}-}D{sub d}{sup K{+-}}in a model independent way and without any correlations to the other fragmentation functions. Only nuclear isospin invariance is assumed. Working with nonsinglets allows us to include the data at very low momentum fractions, which have so far been excluded in global fits, and to perform a first next-next-to leading order fit to fragmentation functions. We find that the kaon nonsinglet fragmentation function at large z is larger than that obtained by the other collaborations from global fit analysis and differs significantly at low z.

  5. Sudden corneal edema due to retained lens nuclear fragment presenting 8.5 years after cataract surgery.

    PubMed

    Pandit, Rahul T; Coburn, Amy G

    2011-06-01

    A 79-year-old woman presented with a 1-week history of sudden onset of decreased vision, pain, and redness in the right eye. Ocular history included uneventful cataract surgery in both eyes more than 8 years prior to presentation. Slitlamp examination revealed significant corneal edema and mild iritis. Gonioscopy revealed a retained lens nuclear fragment in the inferior angle. Surgical removal of the fragment improved the patient's condition. The retained nuclear fragment presumably lodged behind the iris at the time of the initial surgery and spontaneously moved forward more than 8 years later. To our knowledge, this is the longest reported delay between phacoemulsification and presentation of a retained nuclear fragment. Before this case, retained nuclear fragments had been associated with complications within a year of surgery only. We recommend gonioscopy in cases of sudden-onset corneal edema extending to the inferior limbus in patients with a history of phacoemulsification.

  6. Identification of pesticide transformation products in food by liquid chromatography/time-of-flight mass spectrometry via "fragmentation-degradation" relationships.

    PubMed

    García-Reyes, Juan F; Molina-Díaz, Antonio; Fernandez-Alba, Amadeo R

    2007-01-01

    The identification of transformation products of pesticides in foodstuffs is a crucial task difficult to tackle, due to the lack of standards and scarce information available. In this work, we describe a methodology for the identification and structural elucidation of pesticide transformation products in food. The proposed strategy is based on the use of liquid chromatography electrospray time-of-flight mass spectrometry (LC/TOFMS): accurate mass measurements of (molecule and fragment) ions of interest are used in order to establish relationships between fragmentation of the parent pesticides in the instrument (in-source CID fragmentation) and possible degradation products of these pesticides in food. Examples of this strategy showing the potential of LC/TOFMS to determine unknown pesticides in food are described in two different real samples, suggesting that pesticides often are transformed into degradation products in the same fashion that they are fragmented in the instrument. Using the proposed approach and without using standards a priori, based solely on accurate mass measurements of ions and "fragmentation-degradation" relationships, we have identified two parent pesticides (amitraz and malathion) along with six degradation products, m/z 253 (N,N'-bisdimethylphenylformamidine), 163 (N-2,4-dimethylphenyl-N-methyl formamidine), 150 (2,4-dimethylformamidine), and 122 (2,4-dimethylaniline) from amitraz, and m/z 317 and 303, due to ether hydrolysis of methyl and ethyl groups from malathion. Structures for these species were proposed, and the potential of the proposed approach was critically discussed.

  7. Neutron spectra due (13)N production in a PET cyclotron.

    PubMed

    Benavente, J A; Vega-Carrillo, H R; Lacerda, M A S; Fonseca, T C F; Faria, F P; da Silva, T A

    2015-05-01

    Monte Carlo and experimental methods have been used to characterize the neutron radiation field around PET (Positron Emission Tomography) cyclotrons. In this work, the Monte Carlo code MCNPX was used to estimate the neutron spectra, the neutron fluence rates and the ambient dose equivalent (H*(10)) in seven locations around a PET cyclotron during (13)N production. In order to validate these calculations, H*(10) was measured in three sites and were compared with the calculated doses. All the spectra have two peaks, one above 0.1MeV due to the evaporation neutrons and another in the thermal region due to the room-return effects. Despite the relatively large difference between the measured and calculated H*(10) for one point, the agreement was considered good, compared with that obtained for (18)F production in a previous work.

  8. Influence of the hydromechanical stress and temperature on growth and antibody fragment production with Bacillus megaterium.

    PubMed

    Lüders, Svenja; David, Florian; Steinwand, Miriam; Jordan, Eva; Hust, Michael; Dübel, Stefan; Franco-Lara, Ezequiel

    2011-07-01

    Bacillus megaterium was used for production of the lysozyme-specific recombinant scFv D1.3 antibody fragment. Key process parameters like the temperature and the hydromechanical stress play a very important role for significant product formation during process development or scale-up. In this study, the influence of these two variables on growth and recombinant antibody fragment production in a 2-L lab-scale bioreactor system was investigated using a central composite design. Especially a significant influence of the hydromechanical stress on antibody fragment production was detected in batch cultivations. While volumetric power inputs of about 0.5 kW/m(3) (agitation rates around 500 min(-1)) are usually employed in batch cultivations, in this work maximal product concentration was found at a volumetric power input of about 0.06 kW/m(3) (agitation rate around 250 min(-1)) and at a high cultivation temperature of 41 °C. The influence of the two process variables at single-cell level was estimated using flow cytometry too. The characterization was done by estimating the membrane potential giving a hint on bioprocess productivity and secretion capability: the best production was obtained through big cells with low specific membrane potential, which grew at low volumetric power inputs and high cultivation temperatures.

  9. Promoter engineering to optimize recombinant periplasmic Fab' fragment production in Escherichia coli.

    PubMed

    Schofield, Desmond M; Templar, Alex; Newton, Joseph; Nesbeth, Darren N

    2016-07-08

    Fab' fragments have become an established class of biotherapeutic over the last two decades. Likewise, developments in synthetic biology are providing ever more powerful techniques for designing bacterial genes, gene networks and entire genomes that can be used to improve industrial performance of cells used for production of biotherapeutics. We have previously observed significant leakage of an exogenous therapeutic Fab' fragment into the growth medium during high cell density cultivation of an Escherichia coli production strain. In this study we sought to apply a promoter engineering strategy to address the issue of Fab' fragment leakage and its consequent bioprocess challenges. We used site directed mutagenesis to convert the Ptac promoter, present in the plasmid, pTTOD-A33 Fab', to a Ptic promoter which has been shown by others to direct expression at a 35% reduced rate compared to Ptac . We characterized the resultant production trains in which either Ptic or Ptac promoters direct Fab' fragment expression. The Ptic promoter strain showed a 25-30% reduction in Fab' expression relative to the original Ptac strain. Reduced Fab' leakage and increased viability over the course of a fed-batch fermentation were also observed for the Ptic promoter strain. We conclude that cell design steps such as the Ptac to Ptic promoter conversion reported here, can yield significant process benefit and understanding with respect to periplasmic Fab' fragment production. It remains an open question as to whether the influence of transgene expression on periplasmic retention is mediated by global metabolic burden effects or periplasm overcapacity. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:840-847, 2016.

  10. Gordonia (nocardia) amarae foaming due to biosurfactant production.

    PubMed

    Pagilla, K R; Sood, A; Kim, H

    2002-01-01

    Gordonia amarae, a filamentous actinomycete, commonly found in foaming activated sludge wastewater treatment plants was investigated for its biosurfactant production capability. Soluble acetate and paringly soluble hexadecane were used as carbon sources for G. amarae growth and biosurfactant production in laboratory scale batch reactors. The lowest surface tension (critical micelle concentration, CMC) of the cell-free culture broth was 55 dynes/cm when 1,900 mg/L acetate was used as the sole carbon source. The lowest surface tension was less than 40 dynes/cm when either 1% (v/v) hexadecane or a mixture of 1% (v/v) hexadecane and 0.5% (w/v) acetate was used as the carbon source. The maximum biomass concentration (the stationary phase) was achieved after 4 days when acetate was used along with hexadecane, whereas it took about 8 days to achieve the stationary phase with hexadecane alone. The maximum biosurfactant production was 3 x CMC with hexadecane as the sole carbon source, and it was 5 x CMC with the mixture of hexadecane and acetate. Longer term growth studies (approximately 35 days of culture growth) indicated that G. amarae produces biosurfactant in order to solubilize hexadecane, and that adding acetate improves its biosurfactant production by providing readily degradable substrate for initial biomass growth. This research confirms that the foaming problems in activated sludge containing G. amarae in the activated sludge are due to the biosurfactant production by G. amarae when hydrophobic substrates such as hexadecane are present.

  11. Production of single chain Fab (scFab) fragments in Bacillus megaterium

    PubMed Central

    Jordan, Eva; Al-Halabi, Laila; Schirrmann, Thomas; Hust, Michael; Dübel, Stefan

    2007-01-01

    Background The demand on antigen binding reagents in research, diagnostics and therapy raises questions for novel antibody formats as well as appropriate production systems. Recently, the novel single chain Fab (scFab) antibody format combining properties of single chain Fv (scFv) and Fab fragments was produced in the Gram-negative bacterium Escherichia coli. In this study we evaluated the Gram-positive bacterium Bacillus megaterium for the recombinant production of scFab and scFvs in comparison to E. coli. Results The lysozyme specific D1.3 scFab was produced in B. megaterium and E. coli. The total yield of the scFab after purification obtained from the periplasmic fraction and culture supernatant of E. coli was slightly higher than that obtained from culture supernatant of B. megaterium. However, the yield of functional scFab determined by analyzing the antigen binding activity was equally in both production systems. Furthermore, a scFv fragment with specificity for the human C reactive protein was produced in B. megaterium. The total yield of the anti-CRP scFv produced in B. megaterium was slightly lower compared to E. coli, whereas the specific activity of the purified scFvs produced in B. megaterium was higher compared to E. coli. Conclusion B. megaterium allows the secretory production of antibody fragments including the novel scFab antibody format. The yield and quality of functional antibody fragment is comparable to the periplasmic production in E. coli. PMID:18042285

  12. Dissociation of CH4 by electron impact: Production of metastable hydrogen and carbon fragments

    NASA Technical Reports Server (NTRS)

    Finn, T. G.; Carnahan, B. L.; Zipf, E. C.

    1974-01-01

    Metastable fragments produced by electron impact excitation of CH4 have been investigated for incident electron energies from threshold to 300 eV. Only metastable hydrogen and carbon atoms were observed. Onset energies for the production of metastable hydrogen atoms were observed at electron impact energies of 22.0 + or - .5 eV, 25.5 + or - .6 eV, 36.7 + or - .6 eV and 66 + or - 3 eV, and at 26.6 + or - .6 eV for the production of metastable carbon atoms. Most of the fragments appear to have been formed in high-lying Rydberg states. The total metastable hydrogen cross section reaches a maximum value of approximately 1 X 10 to the minus 18th power sq cm at 100 eV. At the same energy, the metastable carbon cross section is 2 x 10 to the minus 19th power sq cm.

  13. Production of exotic nuclei in projectile fragmentation at relativistic and Fermi energies

    NASA Astrophysics Data System (ADS)

    Ogul, R.; Ergun, A.; Buyukcizmeci, N.

    2017-02-01

    Isotopic distributions of projectile fragmentation in peripheral heavy ion collisions of 86Kr on 112Sn are calculated within the statistical multifragmentation model. Obtained data are compared to the experimental cross section measurements. We show the enhancement in the production of neutron-rich isotopes close to the projectile, observed in the experiments. Our results show the universality of the limitation of the excitation energy induced in the projectile residues.

  14. [Radioactive waste due to electric power and mineral fertiliser production].

    PubMed

    Marović, Gordana; Sencar, Jasminka; Bronzović, Maja; Franić, Zdenko; Kovac, Jadranka

    2006-09-01

    Radiation Protection Unit of the Institute for Medical Research and Occupational Health in Zagreb has been conducting systematic investigations of radioactive contamination of the Croatian environment by anthropogenic fission products as well as by naturally occurring radioactive material (NORM) since 1963. Several critical sites in Croatia were identified for NORM, that is, for slag and ash repositories from coal-fired power plants and phosphogypsum repository from a mineral fertilizer production plant. As the coals and phosphate ores contain naturally occurring radionuclides, especially the members of the uranium and thorium radioactive chains, utilising these materials in various industries only enhances their natural radioactivity in residual waste. Consequently, the resulting activity concentrations of natural radionuclides in waste material could be several times higher than in the adjacent soil. These deposited materials pose permanent risk of radiation exposure due to the long physical half-life of natural radionuclides (e.g., T 1/2 = 1600 years for 226Ra). Results of scientific investigations related to natural radioactivity are used in the recovery of slag and ash repositories and landfills, as well as in establishing regulatory criteria targeting import of coal and phosphate ores. In consequence, recently measured activity concentrations of natural radioactivity in imported materials used nowadays in coal-fired power plants are significantly lower than in previously used raw materials. Therefore, slag and ash can be used as additive materials in cement production.

  15. Effects of anthropogenic fragmentation on primary productivity and soil carbon storage in temperate mountain grasslands.

    PubMed

    Cojoc, Emilia Ionela; Postolache, Carmen; Olariu, Bogdan; Beierkuhnlein, Carl

    2016-11-01

    Habitat fragmentation is one of the most severe anthropogenic pressures exerted on ecosystem's biodiversity. Empirical studies to date focused with an overriding interest on the effects of habitat loss or habitat fragmentation per se on species richness patterns detrimental to biogeochemical processes. To account for changes in ecosystem fluxes, we investigated how anthropogenic fragmentation affects primary productivity and carbon storage in temperate mountain grasslands. A field study was conducted to assess the influence of grassland isolation on soil carbon stocks, N availability, species biomass, and plant functional groups distribution. We tested the hypothesis that increased isolation of grassland, within the land cover, decreases soil carbon stocks, and available N nutrient as well as aboveground biomass. Soil carbon concentration decreased with isolation but increased near the forest edge. We found significant differences in aboveground biomass distribution and relative contribution of plant functional groups between isolation conditions. The magnitude of edge effect on carbon stocks, N availability, and primary productivity intensified with increasing isolation as a consequence of the additive influence of edges. Our study reveals that the potential creation of artificially isolated patches diminished primary productivity, N availability, and C stocks. However, in highly managed landscapes, grazing pressure is an additional factor that changes biomass and nutrients patterns. We emphasize that spatial configuration of the landscape has a major role in modulating ecological flows and ecosystem service supply, in addition to changes in species richness.

  16. Neutron production in coincidence with fragments from the 40Ca + H reaction at Elab=357A and 565A MeV

    NASA Astrophysics Data System (ADS)

    Tuve, C.; Albergo, S.; Boemi, D.; Caccia, Z.; Chen, C.-X.; Costa, S.; Crawford, H. J.; Cronqvist, M.; Engelage, J.; Greiner, L.; Guzik, T. G.; Knott, C. N.; Insolia, A.; Lindstrom, P. J.; Mitchell, J. W.; Potenza, R.; Russo, G. V.; Soutoul, A.; Testard, O.; Tricomi, A.; Tull, C. E.; Waddington, C. J.; Webber, W. R.; Wefel, J. P.

    1999-01-01

    Neutron production, in coincidence with fragments emitted in the 40Ca+H reaction at Elab=357A and 565A MeV, has been measured using a 3-module version of the multifunctional neutron spectrometer MUFFINS. The mean neutron multiplicities for neutrons detected in the angular range covered by MUFFINS (0°-3.2°) have been estimated from the comparison between the neutron cross sections, in coincidence with the fragments, and the elemental cross sections. We have found evidence for a preequilibrium emission of prompt neutrons in superposition to a ``slower'' deexcitation of the equilibrated remnant by emission of nucleons and fragments, as already seen in inclusive rapidity distributions. The energy dependence of the inclusive neutron production cross sections, measured in a previous work, is here interpreted as due to the stronger neutron focusing in the forward direction at the higher energy. Comparison with a BNV+phase space coalescence model is discussed.

  17. Enhancement in secondary particulate matter production due to mountain trapping

    NASA Astrophysics Data System (ADS)

    Yao, Teng; Fung, J. C. H.; Ma, H.; Lau, A. K. H.; Chan, P. W.; Yu, J. Z.; Xue, J.

    2014-10-01

    As China's largest economic development zone, the Pearl River Delta (PRD) is subject to particulate matter (PM) and visibility deterioration problems. Due to high PM concentration, haze days impacting ambient visibility have occurred frequently in this region. Besides visibility impairment, PM pollution also causes a negative impact on public health. These negative impacts have heightened the need to improve our understanding of the PM pollution of the PRD region. One major cause of the PRD pollution problem is cold front passages in the winter; however, the mechanism of pollution formation stays unclear. In this study, the Comprehensive Air Quality Model (CAMx) is utilized to investigate the detailed PM production and transport mechanisms in the PRD. Simulated concentrations of PM2.5 species, which have a good correlation with observation, show that sulfate and nitrate are the dominant pollutants among different PM2.5 species. Before the cold front passage a large amount of gas-phase and particle-phase pollutants are transported to the mountainous regions in the north of the PRD, and become trapped by the terrain. Over the mountain regions, cloud driven by upwelling flow promotes aqueous-phase reactions including oxidations of PM precursors such as SO2 and NO2. By this process, production of secondary PM is enhanced. When the cold front continues to advance further south, PM is transported to the PRD cities, and suppressed into a thin layer near the ground by a low planetary boundary layer (PBL). Thus high PM concentration episodes take place in the PRD cities. After examining production and transportation pathways, this study presents that the complex terrain configuration would block pollutant dispersion, provide cloudy environment, and advance secondary PM production. Previous studies have pointed out that pollution emitted from outside this region largely influences the air quality in the PRD; however, this study shows that pollutants from the outside could be

  18. Transverse momentum dependent fragmenting jet functions with applications to quarkonium production

    NASA Astrophysics Data System (ADS)

    Bain, Reggie; Makris, Yiannis; Mehen, Thomas

    2016-11-01

    We introduce the transverse momentum dependent fragmenting jet function (TMDFJF), which appears in factorization theorems for cross sections for jets with an identified hadron. These are functions of z, the hadron's longitudinal momentum fraction, and transverse momentum, p ⊥, relative to the jet axis. In the framework of Soft-Collinear Effective Theory (SCET) we derive the TMDFJF from both a factorized SCET cross section and the TMD fragmentation function defined in the literature. The TMDFJFs are factorized into distinct collinear and soft-collinear modes by matching onto SCET+. As TMD calculations contain rapidity divergences, both the renormalization group (RG) and rapidity renormalization group (RRG) must be used to provide resummed calculations with next-to-leading-logarithm prime (NLL') accuracy. We apply our formalism to the production of J/ψ within jets initiated by gluons. In this case the TMDFJF can be calculated in terms of NRQCD (Non-relativistic quantum chromodynamics) fragmentation functions. We find that when the J/ψ carries a significant fraction of the jet energy, the p T and z distributions differ for different NRQCD production mechanisms. Another observable with discriminating power is the average angle that the J/ψ makes with the jet axis.

  19. Earth's 2006 Encounter with Comet 73P/Schwassmann-Wachmann: Products of Nucleus Fragmentation Seen in Closeup

    NASA Technical Reports Server (NTRS)

    Sekanina, Zdenek

    2007-01-01

    The large numbers of nucleus fragments observed are a spectacular illustration of the process of cascading fragmentation in progress, a concept introduced to interpret the properties of the Kreutz system of sungrazers and comet D/1993 F2. The objective is to describe the fragmentation sequence and hierarchy of comet 73P, the nature of the fragmentation process and observed events, and the expected future evolution of this comet. The orbital arc populated by the fragments refers to an interval of 3.74 days in the perihelion time. This result suggests that they all could be products (but not necessarily first-generation fragments) of two 1995 events, in early September (involving an enormous outburst) and at the beginning of November. The interval of perihelion times is equivalent to a range of about 2.5 m/s in separation velocity or 0.00012 the Sun's attraction in nongravitational deceleration. Their combined effect suggests minor orbital momentum changes acquired during fragmentation and decelerations compatible with survival over two revolutions about the Sun. Fragment B is a likely first-generation product of one of the 1995 events. From the behavior of the primary fragment C, 73P is not a dying comet, even though fragment B and others were episodically breaking up into many pieces. Each episode began with the sudden appearance of a starlike nucleus condensation and a rapidly expanding outburst, followed by a development of jets, and a gradual tailward extension of the fading condensation, until the discrete masses embedded in it could be resolved. In April-May, this debris traveled first to the southwest, but models show their eventual motion toward the projected orbit. Fainter fragments were imaged over limited time, apparently because of their erratic activity (interspersed with periods of dormancy) rather than improptu disintegration. A dust trail joining the fragments and reminiscent of comet 141P/Machholz suggests that cascading fragmentation exerts itself

  20. Stereochemical assignment of the C1-C6 fragment of psymberin by synthesis and natural product degradation.

    PubMed

    Green, Michael E; Rech, Jason C; Floreancig, Paul E

    2005-09-15

    [reaction: see text] Psymberin is a sponge-derived natural product that shows striking selectivity as a cytotoxic agent. Conformational mobility has precluded stereochemical assignment for the acyl fragment of this molecule (psymberic acid) by NMR. Herein we report stereoselective syntheses of all four stereoisomers of psymberic acid. A comparison of the acid-mediated cyclization products of these compounds to the product of psymberin's acidic methanolysis showed the stereochemical configuration of this fragment to be 4S,5S.

  1. On the relationship between microbubble fragmentation, deflation, and broadband superharmonic signal production

    PubMed Central

    Lindsey, Brooks D.; Rojas, Juan D.; Dayton, Paul A.

    2016-01-01

    Acoustic angiography imaging of microbubble contrast agents utilizes the superharmonic energy produced from excited microbubbles, and enables high-contrast, high-resolution imaging. However, the exact mechanism by which broadband harmonic energy is produced is not fully understood. In order to elucidate the role of microbubble shell fragmentation in superharmonic signal production, simultaneous optical and acoustic measurements were performed on individual microbubbles at transmit frequencies from 1.75 to 3.75 MHz and pressures near the shell fragmentation threshold for microbubbles of varying diameter. High-amplitude, broadband superharmonic signals were produced with shell fragmentation, while weaker signals (approximately 25% of peak amplitude) were observed in the presence of shrinking bubbles. Furthermore, when imaging populations of stationary microbubbles with a dual-frequency ultrasound imaging system, a sharper decline in image intensity with respect to frame number was observed for 1 μm bubbles than for 4 μm bubbles. Finally, in a study of two rodents, increasing frame rate from 4 to 7 Hz resulted in a decrease in mean steady-state image intensity of 27% at 1000 kPa and 29% at 1300 kPa. While the existence of superharmonic signals when bubbles shrink has the potential to prolong the imaging efficacy of microbubbles, parameters such as frame rate and peak pressure must be balanced with expected re-perfusion rate in order to maintain adequate contrast during in vivo imaging. PMID:25766572

  2. Fragmentation contributions to J/ψ production at the Tevatron and the LHC.

    PubMed

    Bodwin, Geoffrey T; Chung, Hee Sok; Kim, U-Rae; Lee, Jungil

    2014-07-11

    We compute leading-power fragmentation corrections to J/ψ production at the Tevatron and the LHC. We find that, when these corrections are combined with perturbative corrections through next-to-leading order in the strong coupling constant α(s), we obtain a good fit to high-p(T) cross section data from the CDF and CMS Collaborations. The fitted long-distance matrix elements lead to predictions of near-zero J/ψ polarization in the helicity frame at large p(T).

  3. Expression and production of llama variable heavy-chain antibody fragments (V(HH)s) by Aspergillus awamori.

    PubMed

    Joosten, Vivi; Gouka, Robin J; van den Hondel, Cees A M J J; Verrips, C Theo; Lokman, B Christien

    2005-01-01

    We report the expression and production of llama variable heavy-chain antibody fragments (V(HH)s) by Aspergillus awamori. Fragments encoding V(HH)s were cloned in a suitable Aspergillus expression vector and transformants secreting V(HH) fragments were analysed for integrated gene copy-numbers, mRNA levels and protein production. Functional V(HH)s were detected in the culture medium, indicating the feasibility of producing this type of protein in a fungal expression system. Secreted V(HH)s were subjected to (extracellular) degradation, which could be partially prevented by the addition of BSA to the culture medium.

  4. Heat-Shocked Monocytes Are Resistant to Staphylococcus aureus-Induced Apoptotic DNA Fragmentation due to Expression of HSP72

    PubMed Central

    Guzik, Krzysztof; Bzowska, Małgorzata; Dobrucki, Jerzy; Pryjma, Juliusz

    1999-01-01

    Human peripheral blood monocytes became apoptotic following phagocytosis of Staphylococcus aureus. The consequences of heat stress for monocytes were studied with regard to the effect on S. aureus-induced apoptosis. Exposure of monocytes to 41.5°C for 1 h resulted in HSP72 expression and had no influence on phagocytosis of bacteria; moreover, phagocytosis of S. aureus immediately or shortly after heat shock had no effect on the S. aureus-induced monocyte apoptosis, as evidenced by DNA fragmentation assay. In contrast, cells which recovered from heat shock for 18 to 24 h, although active as phagocytes, were resistant to the S. aureus-induced apoptosis. The observed protective effect was related to the induction of HSP72, since blocking of HSP72 synthesis by an antisense oligomer abolished the protective effect of heat shock on bacterium-induced monocyte apoptosis. PMID:10417194

  5. Rac1 is Required for Matrix Metalloproteinase-13 Production by Chondrocytes in Response to Fibronectin Fragments

    PubMed Central

    Long, David L.; Willey, Jeffrey S.; Loeser, Richard F.

    2013-01-01

    Summary Objective Matrix fragments, including fibronectin fragments (Fnf), accumulate during the development of osteoarthritis (OA) stimulating chondrocyte matrix metalloproteinase (MMP) production. The objective of this study was to determine the role of the small GTPase Rac1 in chondrocyte signaling stimulated by Fnf that results in MMP-13 production. Methods Normal human cartilage was from tissue donors and OA cartilage from knee arthroplasty specimens. Rac1 activity was modulated with a chemical inhibitor, siRNA knock-down, constitutively active (CA)-Rac or dominant negative (DN)-Rac adenovirus. Cells were treated with Fnf or without known Rac activators, epidermal growth factor (EGF) or transforming growth factorα (TGFα). Rac1 activity was measured with a colorometric activity ELISA, pulldown assay, and immunostaining with a monoclonal antibody against active Rac. Results Chemical inhibition of Rac1, as well as knockdown by siRNA and expression of DN-Rac blocked Fnf stimulated MMP-13 production while expression of CA-Rac increased MMP-13. Inhibition of Rho-associated kinase had no effect. EGF and TGFα, but not Fnf, increased Rac1 activity and promoted the increase in MMP-13 above that stimulated by Fnf alone. Active Rac was detected by immunostaining in OA cartilage. Conclusion Rac1 is required for Fnf induced signaling that results in increased MMP-13 production. EGF receptor ligands, which activate Rac, can promote this effect. The presence of active Rac in OA cartilage and the ability of Rac to stimulate MMP-13 production suggests that it could play a role in the cartilage matrix destruction seen in OA. PMID:23460186

  6. Natural Product-Derived Spirooxindole Fragments Serve as Privileged Substructures for Discovery of New Anticancer Agents.

    PubMed

    Yu, Bin; Zheng, Yi-Chao; Shi, Xiao-Jing; Qi, Ping-Ping; Liu, Hong-Min

    2016-01-01

    The utility of natural products for identifying anticancer agents has been highly pursued in the last decades and over 100 drug molecules in clinic are natural products or natural product-derived compounds. Natural products are believed to be able to cover unexplored chemical space that is normally not occupied by commercially available molecule libraries. However, the low abundance and synthetic intractability of natural products have limited their applications in drug discovery. Recently, the identification of biologically relevant fragments derived from biologically validated natural products has been recognized as a powerful strategy in searching new biological probes and drugs. The spirocyclic oxindoles, as privileged structural scaffolds, have shown their potential in designing new drugs. Several anticancer drug candidates such as SAR405838, RO8994, CFI-400945 and their bioisosteres are undergoing clinical trials or preclinical studies. To highlight the significant progress, we focus on illustrating the discovery of SAR405838, RO8994, CFI-400945 and their bioisosteres for cancer therapy using substructure-based strategies and discussing modes of action, binding models and preclinical data.

  7. Screening for Small Molecule Inhibitors of Statin-Induced APP C-terminal Toxic Fragment Production.

    PubMed

    Poksay, Karen S; Sheffler, Douglas J; Spilman, Patricia; Campagna, Jesus; Jagodzinska, Barbara; Descamps, Olivier; Gorostiza, Olivia; Matalis, Alex; Mullenix, Michael; Bredesen, Dale E; Cosford, Nicholas D P; John, Varghese

    2017-01-01

    Alzheimer's disease (AD) is characterized by neuronal and synaptic loss. One process that could contribute to this loss is the intracellular caspase cleavage of the amyloid precursor protein (APP) resulting in release of the toxic C-terminal 31-amino acid peptide APP-C31 along with the production of APPΔC31, full-length APP minus the C-terminal 31 amino acids. We previously found that a mutation in APP that prevents this caspase cleavage ameliorated synaptic loss and cognitive impairment in a murine AD model. Thus, inhibition of this cleavage is a reasonable target for new therapeutic development. In order to identify small molecules that inhibit the generation of APP-C31, we first used an APPΔC31 cleavage site-specific antibody to develop an AlphaLISA to screen several chemical compound libraries for the level of N-terminal fragment production. This antibody was also used to develop an ELISA for validation studies. In both high throughput screening (HTS) and validation testing, the ability of compounds to inhibit simvastatin- (HTS) or cerivastatin- (validation studies) induced caspase cleavage at the APP-D720 cleavage site was determined in Chinese hamster ovary (CHO) cells stably transfected with wildtype (wt) human APP (CHO-7W). Several compounds, as well as control pan-caspase inhibitor Q-VD-OPh, inhibited APPΔC31 production (measured fragment) and rescued cell death in a dose-dependent manner. The effective compounds fell into several classes including SERCA inhibitors, inhibitors of Wnt signaling, and calcium channel antagonists. Further studies are underway to evaluate the efficacy of lead compounds - identified here using cells and tissues expressing wt human APP - in mouse models of AD expressing mutated human APP, as well as to identify additional compounds and determine the mechanisms by which they exert their effects.

  8. Screening for Small Molecule Inhibitors of Statin-Induced APP C-terminal Toxic Fragment Production

    PubMed Central

    Poksay, Karen S.; Sheffler, Douglas J.; Spilman, Patricia; Campagna, Jesus; Jagodzinska, Barbara; Descamps, Olivier; Gorostiza, Olivia; Matalis, Alex; Mullenix, Michael; Bredesen, Dale E.; Cosford, Nicholas D. P.; John, Varghese

    2017-01-01

    Alzheimer’s disease (AD) is characterized by neuronal and synaptic loss. One process that could contribute to this loss is the intracellular caspase cleavage of the amyloid precursor protein (APP) resulting in release of the toxic C-terminal 31-amino acid peptide APP-C31 along with the production of APPΔC31, full-length APP minus the C-terminal 31 amino acids. We previously found that a mutation in APP that prevents this caspase cleavage ameliorated synaptic loss and cognitive impairment in a murine AD model. Thus, inhibition of this cleavage is a reasonable target for new therapeutic development. In order to identify small molecules that inhibit the generation of APP-C31, we first used an APPΔC31 cleavage site-specific antibody to develop an AlphaLISA to screen several chemical compound libraries for the level of N-terminal fragment production. This antibody was also used to develop an ELISA for validation studies. In both high throughput screening (HTS) and validation testing, the ability of compounds to inhibit simvastatin- (HTS) or cerivastatin- (validation studies) induced caspase cleavage at the APP-D720 cleavage site was determined in Chinese hamster ovary (CHO) cells stably transfected with wildtype (wt) human APP (CHO-7W). Several compounds, as well as control pan-caspase inhibitor Q-VD-OPh, inhibited APPΔC31 production (measured fragment) and rescued cell death in a dose-dependent manner. The effective compounds fell into several classes including SERCA inhibitors, inhibitors of Wnt signaling, and calcium channel antagonists. Further studies are underway to evaluate the efficacy of lead compounds – identified here using cells and tissues expressing wt human APP – in mouse models of AD expressing mutated human APP, as well as to identify additional compounds and determine the mechanisms by which they exert their effects. PMID:28261092

  9. Isomer production ratios and the angular momentum distribution of fission fragments

    NASA Astrophysics Data System (ADS)

    Stetcu, I.; Talou, P.; Kawano, T.; Jandel, M.

    2013-10-01

    Latest generation fission experiments provide an excellent testing ground for theoretical models. In this contribution we compare the measurements for 235U(nth,f), obtained with the Detector for Advanced Neutron Capture Experiments (DANCE) calorimeter at Los Alamos Neutron Science Center (LANSCE), with our full-scale simulation of the primary fragment de-excitation, using the recently developed cgmf code, based on a Monte Carlo implementation of the Hauser-Feshbach theoretical model. We compute the isomer ratios as a function of the initial angular momentum of the fission fragments, for which no direct information exists. Comparison with the available experimental data allows us to determine the initial spin distribution. We also study the dependence of the isomer ratio on the knowledge of the low-lying discrete spectrum input for nuclear fission reactions, finding a high degree of sensitivity. Finally, in the same Hauser-Feshbach approach, we calculate the isomer production ratio for thermal neutron capture on stable isotopes, where the initial conditions (spin, excitation energy, etc.) are well understood. We find that with the current parameters involved in Hauser-Feshbach calculations, we obtain up to a factor of 2 deviation from the measured isomer ratios.

  10. Production, purification and biological characterization of mono-PEGylated anti-IL-17A antibody fragments.

    PubMed

    Koussoroplis, Salome-Juliette; Heywood, Sam; Uyttenhove, Catherine; Barilly, Céline; Van Snick, Jacques; Vanbever, Rita

    2013-09-15

    The aim of this study was to maximize the yield of the production of mono-PEGylated anti-interleukin-17A (anti-IL-17A) antibody fragments using large (≥ 20 kDa) polyethylene glycol (PEG) chains. Particular attention was paid to selectively yield mono-PEGylated species to maintain the maximum possible functionality and to simplify the purification. Neutralization of IL-17A by antibody constructs might find application for the treatment of bronchial hyperreactivity. Amino-directed and sulfhydryl-directed PEGylation of the native antibody fragments were compared. The former was selected as it produced the most interesting construct in terms of yield and preservation of biological activity. In particular, the F(ab')2-PEG conjugate with one 40 kDa branched PEG prepared in this study was produced at a 42% yield. The conjugate presented only a slight decrease in its binding activity and in its in vitro inhibitory potency offering interesting perspectives for in vivo studies.

  11. Intensification of tropical Pacific biological productivity due to volcanic eruptions

    NASA Astrophysics Data System (ADS)

    Chikamoto, Megumi O.; Timmermann, Axel; Yoshimori, Masakazu; Lehner, Flavio; Laurian, Audine; Abe-Ouchi, Ayako; Mouchet, Anne; Joos, Fortunat; Raible, Christoph C.; Cobb, Kim M.

    2016-02-01

    Major volcanic eruptions generate widespread ocean cooling, which reduces upper ocean stratification. This effect has the potential to increase nutrient delivery into the euphotic zone and boost biological productivity. Using externally forced last millennium simulations of three climate/Earth System models (Model for Interdisciplinary Research On Climate (MIROC), Community Earth System Model (CESM), and LOch-Vecode-Ecbilt-CLio-agIsm Model (LOVECLIM)), we test the hypothesis that large volcanic eruptions intensify nutrient-driven export production. It is found that strong volcanic radiative forcing enhances the likelihood of eastern Pacific El Niño-like warming in CESM and LOVECLIM. This leads to an initial reduction of nutrients and export production in the eastern equatorial Pacific. However, this initial response reverses after about 3 years in association with La Niña cooling. The resulting delayed enhancement of biological production resembles the multiyear response in MIROC. The model simulations show that volcanic impacts on tropical Pacific dynamics and biogeochemistry persist for several years, thus providing a new source for potential multiyear ecosystem predictability.

  12. Fragment Production and Survival in Irradiated Disks: A Comprehensive Cooling Criterion

    NASA Astrophysics Data System (ADS)

    Kratter, Kaitlin M.; Murray-Clay, Ruth A.

    2011-10-01

    Accretion disks that become gravitationally unstable can fragment into stellar or substellar companions. The formation and survival of these fragments depends on the precarious balance between self-gravity, internal pressure, tidal shearing, and rotation. Disk fragmentation depends on two key factors: (1) whether the disk can get to the fragmentation boundary of Q = 1 and (2) whether fragments can survive for many orbital periods. Previous work suggests that to reach Q = 1, and have fragments survive, a disk must cool on an orbital timescale. Here we show that disks heated primarily by external irradiation always satisfy the standard cooling time criterion. Thus, even though irradiation heats disks and makes them more stable in general, once they reach the fragmentation boundary, they fragment more easily. We derive a new cooling criterion that determines fragment survival and calculate a pressure-modified Hill radius, which sets the maximum size of pressure-supported objects in a Keplerian disk. We conclude that fragmentation in protostellar disks might occur at slightly smaller radii than previously thought and recommend tests for future simulations that will better predict the outcome of fragmentation in real disks.

  13. Collision-induced dissociation products of the protonated dipeptide carnosine: structural elucidation, fragmentation pathways and potential energy surface analysis.

    PubMed

    Moustafa, Eslam M; Ritacco, Ida; Sicilia, Emilia; Russo, Nino; Shoeib, Tamer

    2015-05-21

    Collision-induced dissociation (CID) experiments on protonated carnosine, [carnosine + H](+), with several collision energies were shown to yield eleven different fragment ions with the generation of product ions [carnosine-H2O + H](+) and [carnosine-NH3 + H](+) being the lowest energy processes. Energy-resolved CID showed that at slightly higher collision energies the ions [histidine + H](+) and [histidine-H2O-CO + H](+) are formed. At even higher energies four other product ions were observed, however, attained relatively lower abundances. Quantum chemistry calculations, carried out at different levels of theory, were employed to probe fragmentation mechanisms that account for all the experimental data. All the adopted computational protocols give similar energetic trends, and the range of the calculated free energy barrier values for the generation of all the observed product ions is in agreement with the fragmentation mechanisms offered here.

  14. Flare fragmentation and type III productivity in the 1980 June 27 flare

    NASA Technical Reports Server (NTRS)

    Aschwanden, M. J.; Schwartz, R. A.; Benz, A. O.; Lin, R. P.; Pelling, R. M.

    1990-01-01

    Observations of the solar flare on June 27, 1980 were presented, 16:14-16:33 UT, which was observed by a balloon-borne 300 sq cm phoswich hard X-ray detector and by the IKARUS radio spectrometer. This flare shows intense hard X-ray (HXR) emission and an extreme productivity of (at least 754) type III bursts at 200-400 MHz. A linear correlation was found between the type III burst rate and the HXR fluence. The occurrence of about 10 type III bursts/second, and also the even higher rate of millisecond spikes, suggests a high degree of fragmentation in the acceleration region. This high quantization of injected beams, assuming the thick-target model, shows up in a linear relationship between hard X-ray fluence and the type III rate, but not as fine structures in the HXR time profile. The generation of a superhot isothermal HXR component in the decay phase of the flare coincides with the fade-out of type III production.

  15. Lowest cost due to highest productivity and highest quality

    NASA Astrophysics Data System (ADS)

    Wenk, Daniel

    2003-03-01

    Since global purchasing in the automotive industry has been taken up all around the world there is one main key factor that makes a TB-supplier today successful: Producing highest quality at lowest cost. The fact that Tailored Blanks, which today may reach up to 1/3 of a car body weight, are purchased on the free market but from different steel suppliers, especially in Europe and NAFTA, the philosophy on OEM side has been changing gradually towards tough evaluation criteria. "No risk at the stamping side" calls for top quality Tailored- or Tubular Blank products. Outsourcing Tailored Blanks has been starting in Japan but up to now without any quality request from the OEM side like ISO 13919-1B (welding quality standard in Europe and USA). Increased competition will automatically push the quality level and the ongoing approach to combine high strength steel with Tailored- and Tubular Blanks will ask for even more reliable system concepts which enables to weld narrow seams at highest speed. Beside producing quality, which is the key to reduce one of the most important cost driver "material scrap," in-line quality systems with true and reliable evaluation is going to be a "must" on all weld systems. Traceability of all process related data submitted to interfaces according to customer request in combination with ghost-shift-operation of TB systems are tomorrow's state-of-the-art solutions of Tailored Blank-facilities.

  16. Extraction and recovery of pectic fragments from citrus processing waste for co-production with ethanol

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Steam treatment of citrus processing waste (CPW) at 160°C followed by a rapid decompression (steam explosion) at either pH 2.8 or 4.5 provides an efficient and rapid fragmentation of protopectin in CPW and renders a large fraction of fragmented pectins, arabinans, galactans and arabinogalactans solu...

  17. 30 CFR 210.103 - When are my production reports due?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false When are my production reports due? 210.103 Section 210.103 Mineral Resources MINERALS MANAGEMENT SERVICE, DEPARTMENT OF THE INTERIOR MINERALS REVENUE MANAGEMENT FORMS AND REPORTS Production Reports-Oil and Gas § 210.103 When are my production reports due?...

  18. Mining soil survey databases to explore lithologic, climatic and topographic controls on hillslope production of bedload-size rock fragments

    NASA Astrophysics Data System (ADS)

    Marshall, J. A.; Sklar, L. S.

    2007-12-01

    The grain size distribution of sediments supplied by hillslopes to channel networks may strongly influence landscape dynamics at both the long time scale of landscape evolution and the short time scale of channel response to changes in land use. Little is known, however, about how lithology, climate, and the processes and rates of sediment production and transport on hillslopes, control the grain size distribution supplied to channels. A wealth of soil size distribution measurements have been collected and archived by state and local agencies, which to our knowledge have not been systematically examined to uncover patterns in the mass fraction and size distribution of rock fragments large enough to move as bedload in rivers. Here we report results obtained from data mining soil survey archives in the western United States. To focus on hillslopes with active sediment production, we exclude data from soil pits dug in valley bottoms, terraces and other topographic settings where long-term net accumulation is likely. Among the many questions that can be explored with these data, we are interested in how the mass fraction of rock fragments (>2mm) and their size distribution, averaged over the soil column, varies with factors such as depth-to-bedrock, hillslope gradient, lithology, and mean annual temperature and precipitation. We are also looking for variations with depth within the soil column, that might provide insight into soil disturbance, transport, and weathering regimes. Several general patterns emerge from our work to-date. A large fraction of hillslope soil pedons do not contain any rock fragments, with lithology possibly the dominant control. Where the rock fragment mass fraction is greater than about 0.3, there is commonly an increase in rock fragment concentration with depth within the soil column. Pedons with lower depth-averaged rock fragment concentrations more commonly show no gradient in concentration with depth, suggesting that the disturbance

  19. Confronting fragmentation function universality with single hadron inclusive production at HERA and e{sup +}e{sup -} colliders

    SciTech Connect

    Albino, S.; Kniehl, B. A.; Kramer, G.; Sandoval, C.

    2007-02-01

    Predictions for light charged hadron production data in the current fragmentation region of deeply inelastic scattering from the H1 and ZEUS experiments are calculated using perturbative quantum chromodynamics at next-to-leading order, and using fragmentation functions obtained by fitting to similar data from e{sup +}e{sup -} reactions. General good agreement is found when the magnitude Q{sup 2} of the hard photon's virtuality is sufficiently large. The discrepancy at low Q and small scaled momentum x{sub p} is reduced by incorporating mass effects of the detected hadron. By performing quark tagging, the contributions to the overall fragmentation from the various quark flavours in the ep reactions are studied and compared to the contributions in e{sup +}e{sup -} reactions. The yields of the various hadron species are also calculated.

  20. Mitochondrial fragmentation and superoxide anion production in coronary endothelial cells from a mouse model of type 1 diabetes

    PubMed Central

    Makino, A.; Scott, B. T.

    2010-01-01

    Aims/hypothesis Mitochondria frequently change their shapes by fusion and fission and these morphological dynamics play important roles in mitochondrial function and development as well as programmed cell death. The goal of this study is to investigate whether: (1) mitochondria in mouse coronary endothelial cells (MCECs) isolated from diabetic mice exhibit increased fragmentation; and (2) chronic treatment with a superoxide anion (O2−) scavenger has a beneficial effect on mitochondrial fragmentation in MCECs. Methods MCECs were freshly isolated and lysed for protein measurement, or cultured to determine mitochondrial morphology and O2− production. For the ex vivo hyperglycaemia experiments, human coronary endothelial cells were used. Results Elongated mitochondrial tubules were observed in MCECs isolated from control mice, whereas mitochondria in MCECs from diabetic mice exhibited augmented fragmentation. The level of optic atrophy 1 (OPA1) protein, which leads to mitochondrial fusion, was significantly decreased, while dynamin-related protein 1 (DRP1), which leads to mitochondrial fission, was significantly increased in MCECs from diabetic mice. Diabetic MCECs exhibited significantly higher O2− concentrations in cytosol and mitochondria than control MCECs. Administration of the O2− scavenger TEMPOL to diabetic mice for 4 weeks led to a significant decrease in mitochondrial fragmentation without altering the levels of OPA1 and DRP1 proteins in MCECs. High-glucose treatment for 24 h significantly induced mitochondrial fragmentation, which was restored by TEMPOL treatment. In addition, excess O2− production, either in cytosol or in mitochondria, significantly increased mitochondrial fragmentation. Conclusions/interpretation These data suggest that lowering the O2− concentration can restore the morphological change in mitochondria and may help improve mitochondrial function in diabetic MCECs. Electronic supplementary material The online version of this

  1. Chameleon fragmentation

    SciTech Connect

    Brax, Philippe

    2014-02-01

    A scalar field dark energy candidate could couple to ordinary matter and photons, enabling its detection in laboratory experiments. Here we study the quantum properties of the chameleon field, one such dark energy candidate, in an ''afterglow'' experiment designed to produce, trap, and detect chameleon particles. In particular, we investigate the possible fragmentation of a beam of chameleon particles into multiple particle states due to the highly non-linear interaction terms in the chameleon Lagrangian. Fragmentation could weaken the constraints of an afterglow experiment by reducing the energy of the regenerated photons, but this energy reduction also provides a unique signature which could be detected by a properly-designed experiment. We show that constraints from the CHASE experiment are essentially unaffected by fragmentation for φ{sup 4} and 1/φ potentials, but are weakened for steeper potentials, and we discuss possible future afterglow experiments.

  2. [Preventive measures against health damage due to chemicals in household products].

    PubMed

    Kaniwa, Masa-aki

    2010-01-01

    Chemicals in household products have been paid much attention as the main cause of health damage in consumers, such as allergic contact dermatitis. Preventive measures against health damage due to chemicals in fabrics, plastics and rubber products for household use, are reviewed, focusing on 1) the incidence of health damage due to household products, 2) causative product-chemical investigation, and 3) case studies on skin damage.

  3. Mycobacterium tuberculosis Malate Synthase Structures with Fragments Reveal a Portal for Substrate/Product Exchange*

    PubMed Central

    Huang, Hsiao-Ling; Krieger, Inna V.; Parai, Maloy K.; Gawandi, Vijay B.; Sacchettini, James C.

    2016-01-01

    Fragment screening and high throughput screening are complementary approaches that combine with structural biology to explore the binding capabilities of an active site. We have used a fragment-based approach on malate synthase (GlcB) from Mycobacterium tuberculosis and discovered several novel binding chemotypes. In addition, the crystal structures of GlcB in complex with these fragments indicated conformational changes in the active site that represent the enzyme conformations during catalysis. Additional structures of the complex with malate and of the apo form of GlcB supported that hypothesis. Comparative analysis of GlcB structures in complex with 18 fragments allowed us to characterize the preferred chemotypes and their binding modes. The fragment structures showed a hydrogen bond to the backbone carbonyl of Met-631. We successfully incorporated an indole group from a fragment into an existing phenyl-diketo acid series. The resulting indole-containing inhibitor was 100-fold more potent than the parent phenyl-diketo acid with an IC50 value of 20 nm. PMID:27738104

  4. Rapid eye movement sleep disruption and sleep fragmentation are associated with increased orexin-A cerebrospinal-fluid levels in mild cognitive impairment due to Alzheimer's disease.

    PubMed

    Liguori, Claudio; Nuccetelli, Marzia; Izzi, Francesca; Sancesario, Giuseppe; Romigi, Andrea; Martorana, Alessandro; Amoroso, Chiara; Bernardini, Sergio; Marciani, Maria Grazia; Mercuri, Nicola Biagio; Placidi, Fabio

    2016-04-01

    The orexin system has been investigated in patients affected by mild cognitive impairment (MCI) due to Alzheimer's disease (AD) by measuring orexin-A concentrations in the cerebrospinal fluid (CSF), and correlated to subjective and objective sleep parameters, quantified by questionnaires and polysomnography, respectively. Twenty drug-naïve patients with MCI due to AD were studied and compared with a population of 26 age and/or sex matched controls, divided into subgroups on the basis of the Pittsburgh Sleep Quality Index (PSQI) score. Increased CSF-orexin levels were detected in patients with MCI due to AD in comparison with controls (p < 0.05). In particular, CSF-orexin concentrations were higher in MCI patients suffering from sleep complaints (PSQI ≥5, n = 10) compared with MCI patients with a regular sleep-wake cycle (PSQI <5, n = 10, p < 0.001) and compared with both control groups (with sleep complaints, PSQI ≥5, n = 11, p < 0.001; without sleep complaints, PSQI <5, n = 15, p < 0.001). Moreover, REM sleep was reduced in MCI patients compared with controls (p < 0.01), and had a negative correlation coupled with a reciprocal influence at the multiple regression analysis with CSF-orexin levels (R = -0.65; β = -8.90). REM sleep disruption and sleep fragmentation are related to higher CSF-orexin levels in patients with MCI due to AD, thus suggesting that the orexin system may be involved even in the earliest stages of AD, resulting in prolonged sleep latency, reduced sleep efficiency, and REM sleep impairment.

  5. Dissociation and Re-Aggregation of Multicell-Ensheathed Fragments Responsible for Rapid Production of Massive Clumps of Leptothrix Sheaths.

    PubMed

    Kunoh, Tatsuki; Nagaoka, Noriyuki; McFarlane, Ian R; Tamura, Katsunori; El-Naggar, Mohamed Y; Kunoh, Hitoshi; Takada, Jun

    2016-08-01

    Species of the Fe/Mn-oxidizing bacteria Leptothrix produce tremendous amounts of microtubular, Fe/Mn-encrusted sheaths within a few days in outwells of groundwater that can rapidly clog water systems. To understand this mode of rapid sheath production and define the timescales involved, behaviors of sheath-forming Leptothrix sp. strain OUMS1 were examined using time-lapse video at the initial stage of sheath formation. OUMS1 formed clumps of tangled sheaths. Electron microscopy confirmed the presence of a thin layer of bacterial exopolymer fibrils around catenulate cells (corresponding to the immature sheath). In time-lapse videos, numerous sheath filaments that extended from the periphery of sheath clumps repeatedly fragmented at the apex of the same fragment, the fragments then aggregated and again elongated, eventually forming a large sheath clump comprising tangled sheaths within two days. In this study, we found that fast microscopic fragmentation, dissociation, re-aggregation and re-elongation events are the basis of the rapid, massive production of Leptothrix sheaths typically observed at macroscopic scales.

  6. Dissociation and Re-Aggregation of Multicell-Ensheathed Fragments Responsible for Rapid Production of Massive Clumps of Leptothrix Sheaths

    PubMed Central

    Kunoh, Tatsuki; Nagaoka, Noriyuki; McFarlane, Ian R.; Tamura, Katsunori; El-Naggar, Mohamed Y.; Kunoh, Hitoshi; Takada, Jun

    2016-01-01

    Species of the Fe/Mn-oxidizing bacteria Leptothrix produce tremendous amounts of microtubular, Fe/Mn-encrusted sheaths within a few days in outwells of groundwater that can rapidly clog water systems. To understand this mode of rapid sheath production and define the timescales involved, behaviors of sheath-forming Leptothrix sp. strain OUMS1 were examined using time-lapse video at the initial stage of sheath formation. OUMS1 formed clumps of tangled sheaths. Electron microscopy confirmed the presence of a thin layer of bacterial exopolymer fibrils around catenulate cells (corresponding to the immature sheath). In time-lapse videos, numerous sheath filaments that extended from the periphery of sheath clumps repeatedly fragmented at the apex of the same fragment, the fragments then aggregated and again elongated, eventually forming a large sheath clump comprising tangled sheaths within two days. In this study, we found that fast microscopic fragmentation, dissociation, re-aggregation and re-elongation events are the basis of the rapid, massive production of Leptothrix sheaths typically observed at macroscopic scales. PMID:27490579

  7. Production of Neutron-Unbound States in Intermediate - Fragments from Nitrogen + Silver Reactions at E/a = 35 Mev

    NASA Astrophysics Data System (ADS)

    Heilbronn, Lawrence Harvey

    The populations of neutron-unbound states and of bound states in intermediate-mass fragments have been measured at 15^circ, 31 ^circ, and 64^circ from the ^{14}N + Ag reaction at E/A = 35 MeV. The data are identified in terms of the reaction mechanism producing them, which is either a deep-inelastic mechanism or a quasielastic mechanism. In order to test the assumption that the deep -inelastic data are produced from a thermal source, the unbound-state/bound-state population ratios of deep-inelastic fragments are compared to the predictions of a thermal sequential decay model. Most, but not all, of the deep -inelastic population ratios are fitted with model calculations that assume a source temperature between 2.5 and 3.4 MeV. Three or more populations from the same isotope were measured for ^{13}C, ^ {12}B, and ^{10} Be. The deep-inelastic populations from ^{13}C and ^{10 }Be were fitted with a single temperature, while the deep-inelastic populations from ^ {12}B were not fitted. There is enough of the deep-inelastic data that is not fitted with the predictions of a thermal model that the assumption of a thermal source for the production of deep-inelastic fragments may be incorrect, or there may be other effects present which alter the thermal properties of the data. The dependence of the unbound-state/bound-state population ratio on the fragment kinetic energy shows a difference between the quasielastic and deep-inelastic data. For quasielastic fragments whose mass is near the mass of the beam, the ratio decreases towards zero as the fragment velocity approaches the beam velocity. In contrast, the ratio for half-beam mass quasielastic fragments is constant or only slightly decreasing as the kinetic energy increases. The ratio for deep-inelastic fragments is approximately constant as a function of kinetic energy, independent of fragment mass. The amount of feeding from several neutron-unbound channels into bound states is measured and compared to the sequential

  8. 30 CFR 1202.550 - How do I determine the royalty due on gas production?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ..., DEPARTMENT OF THE INTERIOR Natural Resources Revenue ROYALTIES Gas Production From Indian Leases § 1202.550 How do I determine the royalty due on gas production? If you produce gas from an Indian lease subject... 30 Mineral Resources 3 2011-07-01 2011-07-01 false How do I determine the royalty due on...

  9. Intermediate mass fragment production in central collisions of intermediate energy heavy ions

    SciTech Connect

    Li, T.; Bauer, W.; Craig, D.; Cronqvist, M.; Gualtieri, E.; Hannuschke, S.; Lacey, R.; Llope, W.J.; Reposeur, T.; Vander Molen, A.M.; Westfall, G.D.; Wilson, W.K.; Winfield, J.S.; Yee, J.; Yennello, S.J. ); Nadasen, A. ); Tickle, R.S. ); Norbeck, E. )

    1993-03-29

    We present [ital Z] distributions for fragments with 1[le][ital Z][le]12 from central collisions of [sup 40] Ar+[sup 45]Sc at incident energies ranging from 35 to 115 MeV/nucleon. We find that the [ital Z] distributions can be described by a power law or an exponential and steepen with increasing incident energy. Over the range of incident energies studied, the average number of intermediate mass fragments decreases while the average number of particles increases. When combined with previous results for the charge distributions, a minimum is observed in the extracted power-law parameter.

  10. Single chain Fab (scFab) fragment

    PubMed Central

    Hust, Michael; Jostock, Thomas; Menzel, Christian; Voedisch, Bernd; Mohr, Anja; Brenneis, Mariam; Kirsch, Martina I; Meier, Doris; Dübel, Stefan

    2007-01-01

    Background The connection of the variable part of the heavy chain (VH) and and the variable part of the light chain (VL) by a peptide linker to form a consecutive polypeptide chain (single chain antibody, scFv) was a breakthrough for the functional production of antibody fragments in Escherichia coli. Being double the size of fragment variable (Fv) fragments and requiring assembly of two independent polypeptide chains, functional Fab fragments are usually produced with significantly lower yields in E. coli. An antibody design combining stability and assay compatibility of the fragment antigen binding (Fab) with high level bacterial expression of single chain Fv fragments would be desirable. The desired antibody fragment should be both suitable for expression as soluble antibody in E. coli and antibody phage display. Results Here, we demonstrate that the introduction of a polypeptide linker between the fragment difficult (Fd) and the light chain (LC), resulting in the formation of a single chain Fab fragment (scFab), can lead to improved production of functional molecules. We tested the impact of various linker designs and modifications of the constant regions on both phage display efficiency and the yield of soluble antibody fragments. A scFab variant without cysteins (scFabΔC) connecting the constant part 1 of the heavy chain (CH1) and the constant part of the light chain (CL) were best suited for phage display and production of soluble antibody fragments. Beside the expression system E. coli, the new antibody format was also expressed in Pichia pastoris. Monovalent and divalent fragments (DiFabodies) as well as multimers were characterised. Conclusion A new antibody design offers the generation of bivalent Fab derivates for antibody phage display and production of soluble antibody fragments. This antibody format is of particular value for high throughput proteome binder generation projects, due to the avidity effect and the possible use of common standard sera

  11. Mechanism of production of troponin T fragments during postmortem aging of porcine muscle.

    PubMed

    Kitamura, Shin-ichi; Muroya, Susumu; Tanabe, Soichi; Okumura, Tomoyuki; Chikuni, Koichi; Nishimura, Toshihide

    2005-05-18

    Troponin T (TnT) is one of the myofibrillar proteins that is easily degraded during postmortem aging of pork. In this study, we determined the N-terminal amino acid sequences of TnT degradation fragments produced during postmortem aging and by m-calpain hydrolysis. The N-terminal amino acid sequences of TnT fragments produced during postmortem aging were EVHEPEEKPRPKLTAP, EKPRPKLTAPKIPEG, and APKIPEGEKVDF. On the other hand, the N-terminal amino acid sequences of TnT fragments produced by the action of m-calpain were APPPPAEV, EVHEPEEK, and APK. These sequences of degradation fragments could be mapped on fast type TnT isoform 2. The peptide bonds of His37-Glu38 and Thr51-Ala52 in fTnT2 were cleaved during postmortem aging as well as by the calpain hydrolysis; therefore, calpain was concluded to have an important role in TnT degradation during postmortem aging. It was also found that the sourness-suppressing peptide APPPPAEVHEVHEEVH (Okumura et al. Biosci. Biotechnol. Biochem. 2004, 68, 1657-1662) derived from TnT degradation could be produced by the action of calpains on Glu21-Ala22 and His37-Glu38 sites.

  12. Production and characterization of a single chain variable fragment (scFv) for the mycotoxin deoxynivalenol

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Deoxynivalenol (DON)is a mycotoxin produced by certain fungi that infest cereal grains worldwide. A hybridoma cell line producing a monoclonal antibody (Mab) recognizing DON was used as the starting point in the development of a recombinant single chain variable fragment (scFv) antibody. The scFv wa...

  13. [Serious product accidents due to the chemical substances used in household products in fiscal years 2007 and 2008].

    PubMed

    Isama, Kazuo

    2009-01-01

    The revised consumer product safety law was enforced in 2007. Then, the collection and publication system of the information of product accidents was newly included. Serious product accidents due to the chemical substances used in household products had 32 cases in fiscal years 2007 and 2008. These household products were a desk mat, a sectional bed, a spray-type adhesive, a paint and an adhesive for table tennis rackets. The safety measure of the household product was explained based on the law for the control of household products containing harmful substances.

  14. [Preventive measures against health damage due to chemicals in household products].

    PubMed

    Kaniwa, Masa-aki

    2006-01-01

    Chemicals in household products have been paid much attention as main cause of health damage on consumers, such as allergic contact dermatitis. Preventive measures against health damage due to chemicals in fabric, plastic and rubber products for household uses, are reviewed, focusing on (1) regulation and voluntary control by manufacturers, (2) incidence of health damage from household products, (3) causative product-chemical investigation, (4) case studies on skin damage and respiratory tract damage.

  15. Factors affecting the production of a single-chain antibody fragment by Aspergillus awamori in a stirred tank reactor.

    PubMed

    Sotiriadis, A; Keshavarz, T; Keshavarz-Moore, E

    2001-01-01

    A recombinant strain of Aspergillus awamori expressing anti-lysozyme single chain antibody fragments (scFv), under the control of a xylanase promoter, was studied in order to investigate the impact of medium, induction regime and protease production on the expression of the product. Experiments with the time of induction showed that the optimum results are achieved when induction is started in the late exponential phase (21 h after inoculation) improving the titer of the product from 14.5 mg L(-1), obtained in the early exponential phase (7 h after inoculation), to 16.2 mg L(-1). A 100% increase of the carbon (fructose) and nitrogen (ammonium sulfate) sources in the growth medium resulted in an increase in product concentration from 16.2 to 108.9 mg L(-1) and an increase in maximum dry cell weight from 7.5 to 11.5 g L(-1). A 50% reduction in the concentration of the inducer resulted in an increase in the product yield from 10 mg g(-1) dry cell weight to 12 mg g(-1). Proteolytic enzymes were produced during the fermentation up to concentrations equivalent to 1.4 g L(-1) trypsin, but they had no detrimental effect on the concentration of the antibody fragment.

  16. In-source fragmentation technique for the production of thermalized ions.

    PubMed

    Carl, Damon R; Moision, Robert M; Armentrout, P B

    2009-12-01

    Our electrospray ionization-ion funnel-rf hexapole (ESI-IF-6P) source is designed to produce ions for threshold collision-induced dissociation (TCID) studies in a guided ion beam mass spectrometer. This ion source forms an initial distribution of Ca2+(H2O)x ions where x is 6-9. A new in-source fragmentation technique within the hexapole ion guide of the source is described, which is easy to implement and of modest machining and electrical costs, and is able to generate smaller Ca2+(H2O)x complexes, where x = 2-5. Fragmentation is achieved by biasing an assembly of six 0.25 in. long electrodes that are inserted between the hexapole rods. The assembly is positioned in the high-pressure region of the source such that newly formed Ca2+(H2O)x ions undergo enough collisions to become thermalized, as verified by TCID studies. From the initial distribution of ions, fragmentation proceeds along the lowest energy pathway, which corresponds to sequential water loss for most complexes. However, the Ca2+(H2O) complex cannot be formed using this method because charge separation into CaOH+ and H3O+ becomes the lowest energy pathway from the Ca2+(H2O)2 complex. Therefore, this fragmentation technique can be used to identify the critical size complex for M2+(H2O)x systems, which we define as the complex size (x) at which charge separation becomes a lower energy pathway compared with simple ligand loss.

  17. Parton fragmentation functions

    NASA Astrophysics Data System (ADS)

    Metz, A.; Vossen, A.

    2016-11-01

    The field of fragmentation functions of light quarks and gluons is reviewed. In addition to integrated fragmentation functions, attention is paid to the dependence of fragmentation functions on transverse momenta and on polarization degrees of freedom. Higher-twist and di-hadron fragmentation functions are considered as well. Moreover, the review covers both theoretical and experimental developments in hadron production in electron-positron annihilation, deep-inelastic lepton-nucleon scattering, and proton-proton collisions.

  18. Influence of growth temperature on the production of antibody Fab fragments in different microbes: a host comparative analysis.

    PubMed

    Dragosits, Martin; Frascotti, Gianni; Bernard-Granger, Lise; Vázquez, Felícitas; Giuliani, Maria; Baumann, Kristin; Rodríguez-Carmona, Escarlata; Tokkanen, Jaana; Parrilli, Ermenegilda; Wiebe, Marilyn G; Kunert, Renate; Maurer, Michael; Gasser, Brigitte; Sauer, Michael; Branduardi, Paola; Pakula, Tiina; Saloheimo, Markku; Penttilä, Merja; Ferrer, Pau; Luisa Tutino, Maria; Villaverde, Antonio; Porro, Danilo; Mattanovich, Diethard

    2011-01-01

    Microorganisms encounter diverse stress conditions in their native habitats but also during fermentation processes, which have an impact on industrial process performance. These environmental stresses and the physiological reactions they trigger, including changes in the protein folding/secretion machinery, are highly interrelated. Thus, the investigation of environmental factors, which influence protein expression and secretion is still of great importance. Among all the possible stresses, temperature appears particularly important for bioreactor cultivation of recombinant hosts, as reductions of growth temperature have been reported to increase recombinant protein production in various host organisms. Therefore, the impact of temperature on the secretion of proteins with therapeutic interest, exemplified by a model antibody Fab fragment, was analyzed in five different microbial protein production hosts growing under steady-state conditions in carbon-limited chemostat cultivations. Secretory expression of the heterodimeric antibody Fab fragment was successful in all five microbial host systems, namely Saccharomyces cerevisiae, Pichia pastoris, Trichoderma reesei, Escherichia coli and Pseudoalteromonas haloplanktis. In this comparative analysis we show that a reduction of cultivation temperature during growth at constant growth rate had a positive effect on Fab 3H6 production in three of four analyzed microorganisms, indicating common physiological responses, which favor recombinant protein production in prokaryotic as well as eukaryotic microbes.

  19. 30 CFR 202.550 - How do I determine the royalty due on gas production?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false How do I determine the royalty due on gas production? 202.550 Section 202.550 Mineral Resources MINERALS MANAGEMENT SERVICE, DEPARTMENT OF THE INTERIOR MINERALS REVENUE MANAGEMENT ROYALTIES Gas Production From Indian Leases § 202.550 How do I determine...

  20. 30 CFR 1202.550 - How do I determine the royalty due on gas production?

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 30 Mineral Resources 3 2012-07-01 2012-07-01 false How do I determine the royalty due on gas production? 1202.550 Section 1202.550 Mineral Resources OFFICE OF NATURAL RESOURCES REVENUE, DEPARTMENT OF THE INTERIOR NATURAL RESOURCES REVENUE ROYALTIES Gas Production From Indian Leases § 1202.550 How do...

  1. Hazard map of agricultural products due to typhoons-an example of Bok-choy

    NASA Astrophysics Data System (ADS)

    Lin, Yong-Jun; Ma, Kuo-Chen; Lai, Jihn-Sung; Chang, Tsang-Jung; Tan, Yih-Chi

    2015-04-01

    The torrential rain and strong wind brought by typhoons usually cause huge damages to agricultural products. This study aims at hazard map of agricultural products due to typhoons. The factors affecting the hazard of agricultural products due to typhoons include the duration of flooding, flooding depth, wind speed, and rainfall intensity. High rainfall intensity and high wind speed may knock down the leaves or fruits of the plants. The long-duration of flooding or high flooding depth may chock the plant or rotten the roots. In order to get the information needed for making hazard map due to assumed scenarios, an overland flow simulations is performed for getting the duration of flooding and maximum flooding in the study area. The data of wind speed is obtained from metrological stations. Four levels of hazard are defined due to the characteristic of the chosen agricultural products- Bok-choy (such average height of mature Bok-choy). The final goal of this study is to establish a real-time hazard evaluation system for the specific agricultural products.

  2. Phase analysis in single-chain variable fragment production by recombinant Pichia pastoris based on proteomics combined with multivariate statistics.

    PubMed

    Fujiki, Yuya; Kumada, Yoichi; Kishimoto, Michimasa

    2015-08-01

    The proteomics technique, which consists of two-dimensional gel electrophoresis (2-DE), peptide mass fingerprinting (PMF), gel image analysis, and multivariate statistics, was applied to the phase analysis of a fed-batch culture for the production of a single-chain variable fragment (scFv) of an anti-C-reactive protein (CRP) antibody by Pichia pastoris. The time courses of the fed-batch culture were separated into three distinct phases: the growth phase of the batch process, the growth phase of the fed-batch process, and the production phase of the fed-batch process. Multivariate statistical analysis using 2-DE gel image analysis data clearly showed the change in the culture phase and provided information concerning the protein expression, which suggested a metabolic change related to cell growth and production during the fed-batch culture. Furthermore, specific proteins, such as alcohol oxidase, which is strongly related to scFv expression, and proteinase A, which could biodegrade scFv in the latter phases of production, were identified via the PMF method. The proteomics technique provided valuable information about the effect of the methanol concentration on scFv production.

  3. Sea spray production by bag breakup mode of fragmentation of the air-water interface at strong and hurricane wind

    NASA Astrophysics Data System (ADS)

    Troitskaya, Yuliya; Kandaurov, Alexander; Ermakova, Olga; Kozlov, Dmitry; Sergeev, Daniil; Zilitinkevich, Sergej

    2016-04-01

    Sea sprays is a typical element of the marine atmospheric boundary layer (MABL) of large importance for marine meteorology, atmospheric chemistry and climate studies. They are considered as a crucial factor in the development of hurricanes and severe extratropical storms, since they can significantly enhance exchange of mass, heat and momentum between the ocean and the atmosphere. This exchange is directly provided by spume droplets with the sizes from 10 microns to a few millimeters mechanically torn off the crests of a breaking waves and fall down to the ocean due to gravity. The fluxes associated with the spray are determined by the rate of droplet production at the surface quantified by the sea spray generation function (SSGF), defined as the number of spray particles of radius r produced from the unit area of water surface in unit time. However, the mechanism of spume droplets' formation is unknown and empirical estimates of SSGF varied over six orders of magnitude; therefore, the production rate of large sea spray droplets is not adequately described and there are significant uncertainties in estimations of exchange processes in hurricanes. Experimental core of our work comprise laboratory experiments employing high-speed video-filming, which have made it possible to disclose how water surface looks like at extremely strong winds and how exactly droplets are torn off wave crests. We classified events responsible for spume droplet, including bursting of submerged bubbles, generation and breakup of "projections" or liquid filaments (Koa, 1981) and "bag breakup", namely, inflating and consequent blowing of short-lived, sail-like pieces of the water-surface film, "bags". The process is similar to "bag-breakup" mode of fragmentation of liquid droplets and jets in gaseous flows. Basing on statistical analysis of results of these experiments we show that the main mechanism of spray-generation is attributed to "bag-breakup mechanism On the base of general principles

  4. Development of a high yielding E. coli periplasmic expression system for the production of humanized Fab' fragments.

    PubMed

    Ellis, Mark; Patel, Pareshkumar; Edon, Marjory; Ramage, Walter; Dickinson, Robert; Humphreys, David P

    2017-01-01

    Humanized Fab' fragments may be produced in the periplasm of Escherichia coli but can be subject to degradation by host cell proteases. In order to increase Fab' yield and reduce proteolysis we developed periplasmic protease deficient strains of E. coli. These strains lacked the protease activity of Tsp, protease III and DegP. High cell density fermentations indicated Tsp deficient strains increased productivity two fold but this increase was accompanied by premature cell lysis soon after the induction of Fab' expression. To overcome the reduction in cell viability we introduced suppressor mutations into the spr gene. The mutations partially restored the wild type phenotype of the cells. Furthermore, we coexpressed a range of periplasmic chaperone proteins with the Fab', DsbC had the most significant impact, increasing humanized Fab' production during high cell density fermentation. When DsbC coexpression was combined with a Tsp deficient spr strain we observed an increase in yield and essentially restored "wild type" cell viability. We achieved a final periplasmic yield of over 2.4g/L (final cell density OD600 105), 40 h post Fab' induction with minimal cell lysis.The data suggests that proteolysis, periplasm integrity, protein folding and disulphide bond formation are all potential limiting steps in the production of Fab' fragments in the periplasm of E. coli. In this body of work, we have addressed these limiting steps by utilizing stabilized protease deficient strains and chaperone coexpression. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 33:212-220, 2017.

  5. Productivity of the spruce grouse in fragmented habitat at the edge of its range

    USGS Publications Warehouse

    Whitcomb, S.D.; O'Connell, A.F.; Servello, F.A.

    1996-01-01

    We measured productivity of the Spruce Grouse (Dendragapusc anadensicsa nadensis) in patchy black spruce (Picea mariana) habitat along the southeastern limit of its range in mid-coastal Maine. We captured grouse and attached necklace-mounted radio transmitters to hens prior to nesting. Of 19 females monitored, only 26% raised chicks to the late brood-rearing period. Predation was high on hens (37%) and five were killed before hatching eggs. Six (55%) entire broods were lost and only 30% of chicks survived to late summer. Production ( No. of chicks/female), an index of productivity, was < 1 and lower in Maine and Minnesota study areas in black spruce than areas dominated by jack pine (Pinus banksiana) or a mixture of jack pine and spruce with dense undergrowth. Where Spruce Grouse breed in patchy black spruce communities, immigration from neighboring populations or inter-patch movement by local individuals may be required to maintain viable populations.

  6. A minimalist fragment approach for the design of natural-product-like synthetic scaffolds.

    PubMed

    Genis, Dmitry; Kirpichenok, Mikhail; Kombarov, Roman

    2012-11-01

    Chemistry groups involved in drug discovery continue to devote their efforts to improving compound design with the aim of identifying new drug candidates. Many crucial factors must be considered, including: chemical stability, synthetic difficulty, chemical complexity and diversity, ADMET properties, cost, chemical novelty and intellectual property issues, and 'biological appropriateness'. With regard to the latter point, natural products offer an outstanding source of biologically active molecules that provide many useful features that enable us to design innovative, biologically biased, synthetic compounds. This article outlines the recent approaches in this area and suggests a simple metric to assess synthetic compounds for natural product likeness.

  7. Unusual Water Production Activity of Comet C/2012 S1 (ISON): Outbursts and Continuous Fragmentation

    NASA Astrophysics Data System (ADS)

    Combi, M. R.; Fougere, N.; Mäkinen, J. T. T.; Bertaux, J.-L.; Quémerais, E.; Ferron, S.

    2014-06-01

    The Solar Wind ANisotropies (SWAN) all-sky hydrogen Lyα camera on the SOlar and Heliospheric Observer (SOHO) satellite observed the hydrogen coma of comet C/2012 S1 (ISON) for most of the last month of its activity from 2013 October 24 to November 24, ending just 4 days before perihelion and its final disruption. The water production rate of the comet was determined from these observations. SOHO has been operating in a halo orbit around the Earth-Sun L1 Lagrange point since its launch in late 1995. Most water vapor produced by comets is ultimately photodissociated into two H atoms and one O atom producing a huge hydrogen coma that is routinely observed in the daily SWAN images in comets of sufficient brightness. Water production rates were calculated from 22 images over most of the last month of the pre-perihelion apparition. The water production rate increased very slowly on average from October 24.9 until November 12.9, staying between 1.8 and 3.4 × 1028 s-1, after which it increased dramatically, reaching 1.6 to 2 × 1030 s-1 from November 21.6 to 23.6. It was not detected after perihelion on December 3.7 when it should have been visible. We examine the active surface area necessary to explain the water production rate and its variation and are able to place constraints on the physical size of the original nucleus necessary to account for the large amount of activity from November 12.9 and until just before perihelion.

  8. UNUSUAL WATER PRODUCTION ACTIVITY OF COMET C/2012 S1 (ISON): OUTBURSTS AND CONTINUOUS FRAGMENTATION

    SciTech Connect

    Combi, M. R.; Fougere, N.; Mäkinen, J. T. T.; Bertaux, J.-L.; Quémerais, E.

    2014-06-10

    The Solar Wind ANisotropies (SWAN) all-sky hydrogen Lyα camera on the SOlar and Heliospheric Observer (SOHO) satellite observed the hydrogen coma of comet C/2012 S1 (ISON) for most of the last month of its activity from 2013 October 24 to November 24, ending just 4 days before perihelion and its final disruption. The water production rate of the comet was determined from these observations. SOHO has been operating in a halo orbit around the Earth-Sun L1 Lagrange point since its launch in late 1995. Most water vapor produced by comets is ultimately photodissociated into two H atoms and one O atom producing a huge hydrogen coma that is routinely observed in the daily SWAN images in comets of sufficient brightness. Water production rates were calculated from 22 images over most of the last month of the pre-perihelion apparition. The water production rate increased very slowly on average from October 24.9 until November 12.9, staying between 1.8 and 3.4 × 10{sup 28} s{sup –1}, after which it increased dramatically, reaching 1.6 to 2 × 10{sup 30} s{sup –1} from November 21.6 to 23.6. It was not detected after perihelion on December 3.7 when it should have been visible. We examine the active surface area necessary to explain the water production rate and its variation and are able to place constraints on the physical size of the original nucleus necessary to account for the large amount of activity from November 12.9 and until just before perihelion.

  9. Degradation process of grease due to SF/sub 6/ gas dissociation products

    SciTech Connect

    Suzuki, T.; Koyama, A.; Tomimuro, S.; Yoshiba, H.

    1982-08-01

    It is known that some insulating materials are degraded due to dissociation products of SF/sub 6/ gas. Many studies related to the degradation of insulating materials have been accomplished. But no studies related to sealing materials, for instance (lubricating) grease and rubber have been made. This paper presents the degradation process of grease as follows. Properties of Lithium grease easily change in SF/sub 6/ gas including dissociation products owing to the degradation of Lithium soap used as thickner of grease. However, in the case of Bentonite grease and Urea grease, any changes of properties are not observed.

  10. The Productivity Costs of Premature Mortality Due to Cancer in Australia: Evidence from a Microsimulation Model

    PubMed Central

    Schofield, Deborah J.; Shrestha, Rupendra

    2016-01-01

    Aim To estimate the productivity costs of premature mortality due to cancer in Australia, in aggregate and for the 26 most prevalent cancer sites. Methods A human capital approach was adopted to estimate the long term impacts of Australian cancer deaths in 2003. Using population mortality data, the labour force participation and the present value of lifetime income (PVLI) forgone due to premature mortality was estimated based on individual characteristics at the time of death including age, sex and socioeconomic status. Outcomes were modelled to the year 2030 using economic data from a national microsimulation model. A discount rate of 3% was applied and costs were reported in 2016 Australian dollars. Results Premature deaths from cancer in 2003 resulted in 88,000 working years lost and a cost of $4.2 billion in the PVLI forgone. Costs were close to three times higher in males than females due to the higher number of premature deaths in men, combined with higher levels of workforce participation and income. Lung, colorectal and brain cancers accounted for the highest proportion of costs, while testicular cancer was the most costly cancer site per death. Conclusions The productivity costs of premature mortality due to cancer are significant. These results provide an economic measure of the cancer burden which may assist decision makers in allocating scare resources amongst competing priorities. PMID:27942032

  11. Role of angular momentum in the production of complex fragments in fusion and quasifission reactions

    SciTech Connect

    Kalandarov, Sh. A.; Adamian, G. G.; Antonenko, N. V.; Scheid, W.

    2011-05-15

    The influence of angular momentum on the competition between complete fusion followed by the decay of compound nucleus and quasifission channels is treated within the dinuclear system model. The charge distributions of the products in the reactions {sup 28}Si+{sup 96}Zr, {sup 4}He+{sup 130}Te, and {sup 40}Ca+{sup 82}Kr are predicted at bombarding energies above the Coulomb barrier. The results of calculations for the reactions {sup 93}Nb+{sup 9}Be,{sup 12}C,{sup 27}Al; {sup 84}Kr+{sup 27}Al; {sup 86}Kr+{sup 63}Cu; {sup 139}La+{sup 12}C,{sup 27}Al; and {sup 45}Sc+{sup 65}Cu are compared with the available experimental data.

  12. Assembly of highly standardized gene fragments for high-level production of porphyrins in E. coli.

    PubMed

    Nielsen, Morten T; Madsen, Karina M; Seppälä, Susanna; Christensen, Ulla; Riisberg, Lone; Harrison, Scott J; Møller, Birger Lindberg; Nørholm, Morten H H

    2015-03-20

    Standardization of molecular cloning greatly facilitates advanced DNA engineering, parts sharing, and collaborative efforts such as the iGEM competition. All of these attributes facilitate exploitation of the wealth of genetic information made available by genome and RNA sequencing. Standardization also comes at the cost of reduced flexibility. We addressed this paradox by formulating a set of design principles aimed at maximizing standardization while maintaining high flexibility in choice of cloning technique and minimizing the impact of standard sequences. The design principles were applied to formulate a molecular cloning pipeline and iteratively assemble and optimize a six-gene pathway for protoporphyrin IX synthesis in Escherichia coli. State of the art production levels were achieved through two simple cycles of engineering and screening. The principles defined here are generally applicable and simplifies the experimental design of projects aimed at biosynthetic pathway construction or engineering.

  13. Neutron production in coincidence with fragments from the 4Ca+H reactions at Elab=357 and 565 A MeV

    NASA Astrophysics Data System (ADS)

    Tuvà, C.; Albergo, S.; Boemi, D.; Caccia, Z.; Chen, C.-X.; Costa, S.; Crawford, H. J.; Cronqvist, M.; Engelage, J.; Greiner, L.; Guzik, T. G.; Insolia, A.; Knott, C. N.; Lindstrom, P. J.; Mitchell, J. W.; Potenza, R.; Russo, G. V.; Soutoul, A.; Testard, O.; Tricomi, A.; Tull, C. E.; Waddington, C. J.; Webber, W. R.; Wefel, J. P.

    2000-04-01

    In the frame of the Transport Collaboration neutrons in coincidence with charged fragments produced in the 40Ca+H reaction at Elab=357 and 565 A MeV have been measured at the Heavy Ion Spectrometer System (HISS) facility of the Lawrence Berkeley National Laboratory, using the multifunctional neutron spectrometer MUFFINS. The detector covered a narrow angular range about the beam in the forward direction (0°-3.2°). In this contribution we report absolute neutron production cross sections in coincidence with charged fragments (10⩽Z⩽20). The neutron multiplicities have been estimated from the comparison between the neutron cross sections, in coincidence with the fragments, and the elemental cross sections. We have found evidence for a pre-equilibrium emission of prompt neutrons in superposition to a `slower' deexcitation of the equilibrated remnant by emission of nucleons and fragments, as already seen in the inclusive rapidity distributions.

  14. Neutron Production in Coincidence with Fragments from the {sup 40}Ca + H Reactions at E{sub lab} = 357 and 565 A MeV

    SciTech Connect

    Tuve, C.; Albergo, S.; Boemi, D.; Caccia, Z.; Chen, C.-X.; Costa, S.; Crawford, H.J.; Cronqvist, M.; Engelage, J.; Greiner, L.; Guzik, T.G.; Insolia, A.; Knott, C.N.; Lindstrom, P.J.; Mitchell, J.W.; Potenza, R.; Russo, G.V.; Soutoul, A.; Testard, O.; Tricomi, A.; Tull, C.E.; Waddington, C.J.; Webber, W.R.; Wefel, J.P.

    2000-12-31

    In the frame of the Transport Collaboration neutrons in coincidence with charged fragments produced in the {sup 40}Ca + H reaction at E{sub lab} = 357 and 565 AMeV have been measured at the Heavy Ion Spectrometer System (HISS) facility of the Lawrence Berkeley National Laboratory, using the multifunctional neutron spectrometer MUFFINS. The detector covered a narrow angular range about the beam in the forward direction (0? - 3.2?). In this contribution we report absolute neutron production cross sections in coincidence with charged fragments (10 {<=} Z {<=} 20). The neutron multiplicities have been estimated from the comparison between the neutron cross sections, in coincidence with the fragments, and the elemental cross sections. We have found evidence for a pre-equilibrium emission of prompt neutrons in superposition to a 'slower' deexcitation of the equilibrated remnant by emission of nucleons and fragments, as already seen in the inclusive rapidity distributions.

  15. Universality of fragment shapes

    PubMed Central

    Domokos, Gábor; Kun, Ferenc; Sipos, András Árpád; Szabó, Tímea

    2015-01-01

    The shape of fragments generated by the breakup of solids is central to a wide variety of problems ranging from the geomorphic evolution of boulders to the accumulation of space debris orbiting Earth. Although the statistics of the mass of fragments has been found to show a universal scaling behavior, the comprehensive characterization of fragment shapes still remained a fundamental challenge. We performed a thorough experimental study of the problem fragmenting various types of materials by slowly proceeding weathering and by rapid breakup due to explosion and hammering. We demonstrate that the shape of fragments obeys an astonishing universality having the same generic evolution with the fragment size irrespective of materials details and loading conditions. There exists a cutoff size below which fragments have an isotropic shape, however, as the size increases an exponential convergence is obtained to a unique elongated form. We show that a discrete stochastic model of fragmentation reproduces both the size and shape of fragments tuning only a single parameter which strengthens the general validity of the scaling laws. The dependence of the probability of the crack plan orientation on the linear extension of fragments proved to be essential for the shape selection mechanism. PMID:25772300

  16. Universality of fragment shapes

    NASA Astrophysics Data System (ADS)

    Domokos, Gábor; Kun, Ferenc; Sipos, András Árpád; Szabó, Tímea

    2015-03-01

    The shape of fragments generated by the breakup of solids is central to a wide variety of problems ranging from the geomorphic evolution of boulders to the accumulation of space debris orbiting Earth. Although the statistics of the mass of fragments has been found to show a universal scaling behavior, the comprehensive characterization of fragment shapes still remained a fundamental challenge. We performed a thorough experimental study of the problem fragmenting various types of materials by slowly proceeding weathering and by rapid breakup due to explosion and hammering. We demonstrate that the shape of fragments obeys an astonishing universality having the same generic evolution with the fragment size irrespective of materials details and loading conditions. There exists a cutoff size below which fragments have an isotropic shape, however, as the size increases an exponential convergence is obtained to a unique elongated form. We show that a discrete stochastic model of fragmentation reproduces both the size and shape of fragments tuning only a single parameter which strengthens the general validity of the scaling laws. The dependence of the probability of the crack plan orientation on the linear extension of fragments proved to be essential for the shape selection mechanism.

  17. Improved phytase production by a thermophilic mould Sporotrichum thermophile in submerged fermentation due to statistical optimization.

    PubMed

    Singh, Bijender; Satyanarayana, T

    2008-03-01

    Culture variables affecting phytase production by a thermophilic mould Sporotrichum thermophile in submerged fermentation were optimized. Soluble starch, peptone, Tween-80 and sodium phytate were identified by Plackett-Burman design as the most significant factors to affect phytase production. The 2(4) full factorial central composite design of response surface methodology was applied for optimizing the concentrations of the significant variables and to delineate their interactions. Starch, Tween-80, peptone and sodium phytate at 0.4%, 1.0%, 0.3% and 0.3% supported maximum enzyme titres, respectively. An overall 3.73-fold improvement in phytase production was achieved due to optimization. When sodium phytate was substituted with wheat bran (3%), the phytase titre in the former was comparable with that in the latter.

  18. Highly efficient production of VHH antibody fragments in Brevibacillus choshinensis expression system.

    PubMed

    Mizukami, Makoto; Tokunaga, Hiroko; Onishi, Hiromasa; Ueno, Yohei; Hanagata, Hiroshi; Miyazaki, Nobuo; Kiyose, Norihiko; Ito, Yuji; Ishibashi, Matsujiro; Hagihara, Yoshihisa; Arakawa, Tsutomu; Miyauchi, Akira; Tokunaga, Masao

    2015-01-01

    Anti-IZUMO1PFF VHH (variable domain of camelid heavy chain antibody) clones, N6 and N15, from immunized alpaca (Lama pacos) phage library were efficiently expressed and their VHH products were secreted into the culture medium of Brevibacillus choshinensis HPD31-SP3, e.g., at a level of 26-95mg in 100ml conventional flask culture. With a 3-L scale fed-batch culture for 65h, the N15 VHH protein with C-terminal His-tag was produced at ∼3g/l culture medium. The N6 and N15 proteins were easily purified to apparent homogeneity by cation exchange and Ni-affinity chromatographies. Both proteins showed specific antigen-binding activity by ELISA and high antigen binding affinity, KD=6.0-8.6nM, by surface plasmon resonance analysis. Size exclusion chromatography-multi-angle laser light scattering analysis revealed that N6 and N15 proteins purified were exclusively monomeric form in phosphate buffered saline. CD spectrum showed beta-sheet rich structure, consistent with a typical antibody structure and also suggested aromatic-aromatic interactions, as indicated by a positive peak at 232nm. Thermal melting analysis of the N15 protein with C-terminal His-tag demonstrated a clear thermal transition with a Tm at 67°C. The heat-denatured sample recovered antigen binding activity upon cooling, indicating a reversible denaturation.

  19. Entropy Production of Entirely Diffusional Laplacian Transfer and the Possible Role of Fragmentation of the Boundaries

    NASA Astrophysics Data System (ADS)

    Karamanos, K.; Mistakidis, S. I.; Massart, T. J.; Mistakidis, I. S.

    2015-06-01

    The entropy production and the variational functional of a Laplacian diffusional field around the first four fractal iterations of a linear self-similar tree (von Koch curve) is studied analytically and detailed predictions are stated. In a next stage, these predictions are confronted with results from numerical resolution of the Laplace equation by means of Finite Elements computations. After a brief review of the existing results, the range of distances near the geometric irregularity, the so-called "Near Field", a situation never studied in the past, is treated exhaustively. We notice here that in the Near Field, the usual notion of the active zone approximation introduced by Sapoval et al. [M. Filoche and B. Sapoval, Transfer across random versus deterministic fractal interfaces, Phys. Rev. Lett. 84(25) (2000) 5776;1 B. Sapoval, M. Filoche, K. Karamanos and R. Brizzi, Can one hear the shape of an electrode? I. Numerical study of the active zone in Laplacian transfer, Eur. Phys. J. B. Condens. Matter Complex Syst. 9(4) (1999) 739-753.]2 is strictly inapplicable. The basic new result is that the validity of the active-zone approximation based on irreversible thermodynamics is confirmed in this limit, and this implies a new interpretation of this notion for Laplacian diffusional fields.

  20. Increasing pressure on freshwater resources due to terrestrial feed ingredients for aquaculture production.

    PubMed

    Pahlow, M; van Oel, P R; Mekonnen, M M; Hoekstra, A Y

    2015-12-01

    As aquaculture becomes more important for feeding the growing world population, so too do the required natural resources needed to produce aquaculture feed. While there is potential to replace fish meal and fish oil with terrestrial feed ingredients, it is important to understand both the positive and negative implications of such a development. The use of feed with a large proportion of terrestrial feed may reduce the pressure on fisheries to provide feed for fish, but at the same time it may significantly increase the pressure on freshwater resources, due to water consumption and pollution in crop production for aquafeed. Here the green, blue and gray water footprint of cultured fish and crustaceans related to the production of commercial feed for the year 2008 has been determined for the major farmed species, representing 88% of total fed production. The green, blue and gray production-weighted average feed water footprints of fish and crustaceans fed commercial aquafeed are estimated at 1629 m3/t, 179 m3/t and 166 m3/t, respectively. The estimated global total water footprint of commercial aquafeed was 31-35 km3 in 2008. The top five contributors to the total water footprint of commercial feed are Nile tilapia, Grass carp, Whiteleg shrimp, Common carp and Atlantic salmon, which together have a water footprint of 18.2 km3. An analysis of alternative diets revealed that the replacement of fish meal and fish oil with terrestrial feed ingredients may further increase pressure on freshwater resources. At the same time economic consumptive water productivity may be reduced, especially for carnivorous species. The results of the present study show that, for the aquaculture sector to grow sustainably, freshwater consumption and pollution due to aquafeed need to be taken into account.

  1. Slope Evolution by Stochastic Soil Production and Transport due to Biota

    NASA Astrophysics Data System (ADS)

    Dietrich, W. E.; Bellugi, D.

    2006-05-01

    To explore the role of variability in prediction of landscape form and evolution we need transport expressions that explicitly account for mechanisms linking a process to a stochastic driver or variable state. Recent work has begun the important task of exploring how stochastic rainfall events (rather than steady runoff) may affect landscape development. Another source of variability, bedrock characteristics, has long been discussed and noted, but predictions, using testable mechanistic expressions of processes, of how, say, bedrock fractures direct streams, or lithology determines hillslope gradients are lacking. A third source of stochasticity is the action of biota, and, here, even less is known. For hillslope processes, the role of biota is swept into parameters that set rates or controls strength or resistance in physical transport laws. While these parameters can be determined from field studies, they are usually evaluated for geomorphically significant periods in which the stochastic nature of biotic activity is ignored. Some aspects of stochasticity due to periodic fires have been explored. On hillslopes, rates of soil production from bedrock is often treated as an inverse function of soil depth, with the explanation being that biotic disruption of underlying weathered bedrock is less likely the thicker the soil. Transport downslope is modeled with linear and non-linear slope dependent expressions, with the rate constant parameters often assumed to be driven by dilational activity of biota in the soil. Here we explore the evolution of soil thickness and hillslope form caused by stochastic soil production and transport due to tree throw. For soil production the average recurrence interval of production is specified, and production occurrence at any cell is an independent random event at each time step. The amount of bedrock converted to soil at a production event is specified by the empirical soil production function. All disrupted bedrock and overlying soil

  2. Middle atmosphere NO/x/ production due to ion propulsion induced radiation belt proton precipitation

    NASA Technical Reports Server (NTRS)

    Aikin, A. C.; Jackman, C. H.

    1980-01-01

    The suggestion that keV Ar(+) resulting from ion propulsion operations during solar power satellite construction could cause energetic proton precipitation from the inner radiation belt is examined to determine if such precipitation could cause significant increases in middle atmosphere nitric oxide concentrations thereby adversely affecting stratospheric ozone. It is found that the initial production rate of NO (mole/cu cm-sec) at 50 km is 130 times that due to nitrous oxide reacting with excited oxygen. However, since the time required to empty the inner belt of protons is about 1 sec and short compared to the replenishment time due to neutron decay, precipitation of inner radiation belt protons will have no adverse atmospheric environmental effect.

  3. SimPLE.ca: Simulator of Productivity Loss due to Erosion for Canada

    SciTech Connect

    Bremer, Eric; Greer, Ken J.; Black, Malcolm; Townley-Smith, Lawrence; Malhi, S. S.; Izaurralde, R Cesar; Larney, F. J.

    2008-05-01

    Robust and practical estimates of the impact of soil erosion on crop productivity are essential for developing and implementing appropriate solutions for soil erosion on agricultural land. The objective of this study was to develop a simple model which captured the most important relationships between topsoil erosion and productivity loss for major agricultural regions of Canada. The model was developed for spring wheat (Triticum aestivum L.) and corn (Zea mays L.). Using annual time steps, maximum crop yields were reduced by soil erosion due to losses in available water-holding capacity, N-mineralization potential and available P. Using minimal input data, the model accounted for 56% of the variation in relative yields (fraction of non-eroded controls) determined in field studies using desurfacing or comparison plot methods.

  4. Streptococcus pneumoniae in biofilms are unable to cause invasive disease due to altered virulence determinant production.

    PubMed

    Sanchez, Carlos J; Kumar, Nikhil; Lizcano, Anel; Shivshankar, Pooja; Dunning Hotopp, Julie C; Jorgensen, James H; Tettelin, Hervé; Orihuela, Carlos J

    2011-01-01

    It is unclear whether Streptococcus pneumoniae in biofilms are virulent and contribute to development of invasive pneumococcal disease (IPD). Using electron microscopy we confirmed the development of mature pneumococcal biofilms in a continuous-flow-through line model and determined that biofilm formation occurred in discrete stages with mature biofilms composed primarily of dead pneumococci. Challenge of mice with equal colony forming units of biofilm and planktonic pneumococci determined that biofilm bacteria were highly attenuated for invasive disease but not nasopharyngeal colonization. Biofilm pneumococci of numerous serotypes were hyper-adhesive and bound to A549 type II pneumocytes and Detroit 562 pharyngeal epithelial cells at levels 2 to 11-fold greater than planktonic counterparts. Using genomic microarrays we examined the pneumococcal transcriptome and determined that during biofilm formation S. pneumoniae down-regulated genes involved in protein synthesis, energy production, metabolism, capsular polysaccharide (CPS) production, and virulence. We confirmed these changes by measuring CPS by ELISA and immunoblotting for the toxin pneumolysin and the bacterial adhesins phosphorylcholine (ChoP), choline-binding protein A (CbpA), and Pneumococcal serine-rich repeat protein (PsrP). We conclude that biofilm pneumococci were avirulent due to reduced CPS and pneumolysin production along with increased ChoP, which is known to bind C-reactive protein and is opsonizing. Likewise, biofilm pneumococci were hyper-adhesive due to selection for the transparent phase variant, reduced CPS, and enhanced production of PsrP, CbpA, and ChoP. These studies suggest that biofilms do not directly contribute to development of IPD and may instead confer a quiescent mode of growth during colonization.

  5. Mesospheric NO2 production due to relativistic electron precipitation from 2007 till 2011

    NASA Astrophysics Data System (ADS)

    Friederich, Felix; Sinnhuber, Miriam; Funke, Bernd; von Clarmann, Thomas; Stiller, Gabriele; Orphal, Johannes

    2013-04-01

    Electrons of the radiation belts and the aurora can precipitate into the Earth's atmosphere. Depending on their energy they intrude into different altitudes and can excitate, ionize, and dissociate molecular nitrogen. Subsequent (ion-)chemical reactions result in an effective NOx-production (NOx=NO+NO2). NOx is produced mostly by auroral electrons in the thermosphere at ca. 110 km altitude. But relativistic electrons from the radiation belts can also reach the stratosphere. However, in the stratosphere and lower mesosphere, no direct NOx-production due to electron precipitation has been detected yet. We use NO2 observations from the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) on Envisat in the altitude range from 40 km to 60 km in order to search for direct NOx-production. We show that the AP index correlates with the nighttime NO2 abundance between 44 km and 54 km altitude at 65±5°N geomagnetic latitude. At these altitudes the NO2 ratio of nighttime NOx is between 80 % and 100 %. Because of the correlation between AP index and nighttime NO2, we conclude, that there is direct NOx-production caused by relativistic electrons about 0.5 ppb at the most.

  6. Production of human antibody fragments binding to melittin and phospholipase A2 in Africanised bee venom: minimising venom toxicity.

    PubMed

    Funayama, Jaqueline C; Pucca, Manuela B; Roncolato, Eduardo C; Bertolini, Thaís B; Campos, Lucas B; Barbosa, José E

    2012-03-01

    The hybrid created from the crossbreeding of European and African bees, known as the Africanised bee, has provided numerous advantages for current beekeeping. However, this new species exhibits undesirable behaviours, such as colony defence instinct and a propensity to attack en masse, which can result in serious accidents. To date, there is no effective treatment for cases of Africanised bee envenomation. One promising technique for developing an efficient antivenom is the use of phage display technology, which enables the production of human antibodies, thus avoiding the complications of serum therapy, such as anaphylaxis and serum sickness. The aim of this study was to produce human monoclonal single-chain Fv (scFv) antibody fragments capable of inhibiting the toxic effects of Africanised bee venom. We conducted four rounds of selection of antibodies against the venom and three rounds of selection of antibodies against purified melittin. Three clones were selected and tested by enzyme-linked immunosorbent assay to verify their specificity for melittin and phospholipase A2. Two clones (C5 and C12) were specific for melittin, and one (A7) was specific for phospholipase A2. In a kinetic haemolytic assay, these clones were evaluated individually and in pairs. The A7-C12 combination had the best synergistic effect and was chosen to be used in the assays of myotoxicity inhibition and lethality. The A7-C12 combination inhibited the in vivo myotoxic effect of the venom and increased the survival of treated animals.

  7. High production of llama variable heavy-chain antibody fragment (VHH) fused to various reader proteins by Aspergillus oryzae.

    PubMed

    Hisada, Hiromoto; Tsutsumi, Hiroko; Ishida, Hiroki; Hata, Yoji

    2013-01-01

    Llama variable heavy-chain antibody fragment (VHH) fused to four different reader proteins was produced and secreted in culture medium by Aspergillus oryzae. These fusion proteins consisted of N-terminal reader proteins, VHH, and a C-terminal his-tag sequence which facilitated purification using one-step his-tag affinity chromatography. SDS-PAGE analysis of the deglycosylated purified fusion proteins confirmed that the molecular weight of each corresponded to the expected sum of VHH and the respective reader proteins. The apparent high molecular weight reader protein glucoamylase (GlaB) was found to be suitable for efficient VHH production. The GlaB-VHH-His protein bound its antigen, human chorionic gonadotropin, and was detectable by a new ELISA-based method using a coupled assay with glucoamylase, glucose oxidase, peroxidase, maltose, and 3,3',5,5'-tetramethylbenzidine as substrates. Addition of potassium phosphate to the culture medium induced secretion of 0.61 mg GlaB-VHH-His protein/ml culture medium in 5 days.

  8. Stress triggering of earthquakes and subsidence in the Louisiana coastal zone due to hydrocarbon production

    NASA Astrophysics Data System (ADS)

    Mallman, Ellen P.

    This thesis presents contributions towards better understanding of the interaction between earthquakes through elastic stress triggering and the role of hydrocarbon production on subsidence and land loss in southern Louisiana. The first issue addressed in this thesis is that of the role of static stress changes on earthquake triggering. The first study investigated whether observed changes in seismicity rate following the 1992 Landers, California and 1995 Kobe, Japan earthquakes are accurately predicted by elastic Coulomb stress transfer models. The analyses found that for all the tested DeltaCFS models wherever seismicity rate changes could be resolved the rate increased regardless of whether the DeltaCFS theoretically promoted or inhibited failure. The second study the common definition of a stress shadow was extended to independently test the stress shadow hypothesis using a global catalog of seismicity. The analyses indicated that while stress shadows are subtle, they are present in the global catalog. It also explains why "classical" stress shadows, similar to what was observed following the 1906 San Francisco earthquake are rarely observed for individual main shocks. The second issue addressed in this thesis is the role of hydrocarbon production on subsidence and land loss in the Louisiana Coastal Zone. The two studies in this thesis extend previous work by modeling the effect of oil and gas production in the region in two ways. First, multiple producing oil and gas fields and multiple epochs of leveling data are considered to provide constraints on predicted subsidence. Second, the role of compaction of the reservoir bounding shales on the regional subsidence signal is included. The results of the two studies on the role of hydrocarbon production on subsidence in the Louisiana Coastal Zone indicate that regional models of subsidence must include the effects of production-induced subsidence due to both sands and shales, but that this can not account for the

  9. Fragmentation Pathways in the Uracil Radical Cation

    SciTech Connect

    Zhou, Congyi; Matsika, Spiridoula; Kotur, Marija; Weinacht, Thomas C.

    2012-08-24

    We investigate pathways for fragmentation in the uracil radical cation using ab initio electronic structure calculations. We focus on the main fragments produced in pump–probe dissociative ionization experiments. These are fragments with mass to charge ratios (m/z) of 69, 28, 41, and 42. Barriers to dissociation along the ground ionic surface are reported, which provide an estimate of the energetic requirements for the production of the main fragments. Finally, direct and sequential fragmentation mechanisms have been analyzed, and it is concluded that sequential fragmentation after production of fragment with m/z 69 is the dominant mechanism for the production of the smaller fragments.

  10. Effects on carbon and nitrogen emissions due to swine manure removal for biofuel production.

    PubMed

    Weaver, Kim H; Harper, Lowry A; Brown, Sarah M

    2012-01-01

    Methane (CH) and ammonia (NH) are emitted from swine-manure processing lagoons, contributing to global climate change and reducing air quality. Manure diverted to biofuel production is proposed as a means to reduce CH emissions. At a swine confined animal feeding operation in the U.S. Central Great Basin, animal manure was diverted from 12 farms to a biofuel facility and converted to methanol. Ammonia emissions were determined using the De Visscher Model from measured data of dissolved lagoon ammoniacal N concentrations, pH, temperature, and wind speed at the lagoon sites. Other lagoon gas emissions were measured with subsurface gas collection devices and gas chromatography analysis. During 2 yr of study, CO and CH emissions from the primary lagoons decreased 11 and 12%, respectfully, as a result of the biofuel process, compared with concurrently measured control lagoon emissions. Ammonia emissions increased 47% compared with control lagoons. The reduction of CH and increase in NH emissions agrees with a short-term study measured at this location by Lagrangian inverse dispersion analysis. The increase in NH emissions was primarily due to an increase in lagoon solution pH attributable to decreased methanogenesis. Also observed due to biofuel production was a 20% decrease in conversion of total ammoniacal N to N, a secondary process for the removal of N in anaerobic waste lagoons. The increase in NH emissions can be partially attributed to the decrease in N production by a proposed NH conversion to N mechanism. This mechanism predicts that a decrease in NH conversion to N increases ammoniacal N pH. Both effects increase NH emissions. It is unknown whether the decrease in NH conversion to N is a direct or physical result of the decrease in methanogenesis. Procedures and practices intended to reduce emissions of one pollutant can have an unintended consequence on the emissions of another pollutant.

  11. Quantifying the climate impacts of albedo changes due to biofuel production: a comparison with biogeochemical effects

    NASA Astrophysics Data System (ADS)

    Caiazzo, Fabio; Malina, Robert; Staples, Mark D.; Wolfe, Philip J.; Yim, Steve H. L.; Barrett, Steven R. H.

    2014-01-01

    Lifecycle analysis is a tool widely used to evaluate the climate impact of greenhouse gas emissions attributable to the production and use of biofuels. In this paper we employ an augmented lifecycle framework that includes climate impacts from changes in surface albedo due to land use change. We consider eleven land-use change scenarios for the cultivation of biomass for middle distillate fuel production, and compare our results to previous estimates of lifecycle greenhouse gas emissions for the same set of land-use change scenarios in terms of CO2e per unit of fuel energy. We find that two of the land-use change scenarios considered demonstrate a warming effect due to changes in surface albedo, compared to conventional fuel, the largest of which is for replacement of desert land with salicornia cultivation. This corresponds to 222 gCO2e/MJ, equivalent to 3890% and 247% of the lifecycle GHG emissions of fuels derived from salicornia and crude oil, respectively. Nine of the land-use change scenarios considered demonstrate a cooling effect, the largest of which is for the replacement of tropical rainforests with soybean cultivation. This corresponds to - 161 gCO2e/MJ, or - 28% and - 178% of the lifecycle greenhouse gas emissions of fuels derived from soybean and crude oil, respectively. These results indicate that changes in surface albedo have the potential to dominate the climate impact of biofuels, and we conclude that accounting for changes in surface albedo is necessary for a complete assessment of the aggregate climate impacts of biofuel production and use.

  12. Measurement of HOxproduction rate due to radon decay in air

    SciTech Connect

    Ding, Huiling

    1993-08-01

    Radon in indoor air may cause the exposure of the public to excessive radioactivity. Radiolysis of water vapor in indoor air due to radon decay could produce (•OH and HO2 •) that may convert atmospheric constituents to compounds of lower vapor pressure. These lower vapor pressure compounds might then nucleate to form new particles in the indoor atmosphere. Chemical amplification was used to determine HOxproduction rate in indoor air caused by radon decay. Average HOxproduction rate was found to be (4.31±0.07) x 105 HOx• per Rn decay per second (Bq) 3.4 to 55.0% at 22C. This work provided G(HOx•)-value, 7.86±0.13 No./100 eV in air by directly measuring [HOx•] formed from the radiolysis procedure. This G value implies that HOx• produced by radon decay in air might be formed by multiple processes and may be result of positive ion-molecule reactions, primary radiolysis, and radical reactions. There is no obvious relation between HOxproduction rate and relative humidity. A laser-induced fluorescence (LIF) system has been used for •OH production rate measurement; it consists of an excimer laser, a dye laser, a frequency doubler, a gaseous fluorescence chamber, and other optical and electronic parts. This system needs to be improved to eliminate the interferences of light scattering and artificial •OH produced from the photolysis of O3/H2O.

  13. Heavy fragment production cross sections from 1.05 GeV/nucleon 56Fe in C, Al, Cu, Pb, and CH2 targets

    NASA Technical Reports Server (NTRS)

    Zeitlin, C.; Heilbronn, L.; Miller, J.; Rademacher, S. E.; Borak, T.; Carter, T. R.; Frankel, K. A.; Schimmerling, W.; Stronach, C. E.; Chatterjee, A. (Principal Investigator)

    1997-01-01

    We have obtained charge-changing cross sections and partial cross sections for fragmentation of 1.05 GeV/nucleon Fe projectiles incident on H, C, Al, Cu, and Pb nuclei. The energy region covered by this experiment is critical for an understanding of galactic cosmic ray propagation and space radiation biophysics. Surviving primary beam particles and fragments with charges from 12 to 25 produced within a forward cone of half-angle 61 mrad were detected using a silicon detector telescope to identify their charge and the cross sections were calculated after correction of the measured yields for finite target thickness effects. The cross sections are compared to model calculations and to previous measurements. Cross sections for the production of fragments with even-numbered nuclear charges are seen to be enhanced in almost all cases.

  14. Production of new neutron-rich isotopes of heavy elements in fragmentation reactions of {sup 238}U projectiles at 1A GeV

    SciTech Connect

    Alvarez-Pol, H.; Benlliure, J.; Casarejos, E.; Cortina-Gil, D.; Fernandez-Dominguez, B.; Pereira, J.; Audouin, L.; Enqvist, T.; Schmidt, K.-H.; Yordanov, O.; Junghans, A. R.; Jurado, B.; Rejmund, F.

    2010-10-15

    The production of heavy neutron-rich nuclei has been investigated using cold-fragmentation reactions of {sup 238}U projectiles at relativistic energies. The experiment performed at the high-resolving-power magnetic spectrometer Fragment Separator at GSI made it possible to identify 40 new heavy neutron-rich nuclei: {sup 205}Pt, {sup 207-210}Au, {sup 211-216}Hg, {sup 214-217}Tl, {sup 215-220}Pb, {sup 219-224}Bi, {sup 223-227}Po, {sup 225-229}At, {sup 230,231}Rn, and {sup 233}Fr. The production cross sections of these nuclei were also determined and used to benchmark reaction codes that predict the production of nuclei far from stability.

  15. Human health risks due to consumption of chemically contaminated fishery products.

    PubMed Central

    Ahmed, F E; Hattis, D; Wolke, R E; Steinman, D

    1993-01-01

    A small proportion of fishery products contaminated with appreciable amounts of potentially hazardous inorganic and organic contaminants from natural and environmental sources seem to pose the greatest potential for toxicity to consumers of fishery products in the United States. Health risks due to chemicals (e.g., modest changes in the overall risk of cancer, subtle deficits of neurological development in fetuses and children) are difficult to measure directly in people exposed to low levels. Immunocompetence may increase cancer risk. Inferences about the potential magnitude of these problems must be based on the levels of specific chemical present, observations of human populations and experimental animals exposed to relatively high doses, and theories about the likely mechanisms of action of specific intoxicants and the population distribution of sensitivity of human exposure. Lognormal distributions were found to provide good descriptions of the pattern of variation of contaminant concentrations among different species and geographic areas; this variability offers a solution for reduction of exposure through restricting harvest of aquatic animals from certain sites and by excluding certain species. Available information suggest that risks are not generally of high magnitude; nevertheless, their control will significantly improve public health.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:8143635

  16. [Production of recombinant fragments of the Clostridium tetani neurotoxin for the development of new immune-prophylaxis preparations against tetanus].

    PubMed

    Varfolomeeva, N A; Makhotina, O A; Sergeeva, T I; Belyĭ, Iu F

    2003-01-01

    Tetanus belongs to dangerous infection diseases, whose effective prevention can be ensured by vaccines. The acting substance of tetanus vaccines, presently in use, is a partially purified and deprived-of-lethal-action Clostridium tetani neurotoxin. The construction of a subunit preparation on the basis of toxin fragments obtained through gene engineering could be a method aimed at promoting the quality of the used tetanus vaccines. With this goal in mind, we built, within the present case study, the expressing genetic constructions and obtained, in the pure form, an extensive tetanus-vaccine chain with its C-terminal (Hc) fragment, hydride peptides, containing the Hc-fragment and C-terminal fragment of toxin B C. difficile, as well as Hc-fragment and S3 collagen-binding domain of collagenase C. histolyticum. The thus obtained proteins can be used in testing their immunogenic and protective properties, while the conducted study could be a basis for further research of a new-generation vaccine against tetanus and other human infection diseases.

  17. Production of a single-chain fragment of the murine anti-idiotypic antibody ACA125 as phage-displayed and soluble antibody by recombinant phage antibody technique.

    PubMed

    Schlebusch, H; Reinartz, S; Kaiser, R; Grünn, U; Wagner, U

    1997-02-01

    The F(ab')2 fragment of the murine monoclonal anti-idiotypic antibody ACA125 mimicking the tumor-associated antigen CA125 is used as a vaccine for the induction of an anti-tumoral immunity in patients with ovarian carcinoma. We tried to generate a single-chain fragment (ScFv) composed of ACA125 heavy- and light-chain variable domains connected by a polypeptide linker as an alternative to the corresponding F(ab')2 fragment. Heavy- and light-chain genes of antibody-producing mouse hybridoma cell line were amplified separately and assembled into a ScFv gene with linker DNA by the polymerase chain reaction (PCR). The ScFv gene was ligated into the phagemid vector pCANTAB5E, which allows the production of both phage-displayed and soluble ScFv. Transformed Escherichia coli TG1 cells were infected with M13K07 helper phage to yield recombinant phage, which display ScFv fragments as a g3p fusion protein on the surface of the filamentous phage M13. Recombinant phages could be selected by binding to the idiotypic antibody OC125 after one round of panning and directly used to reinfect E. coli TG1 cells. The E. coli nonsuppressor strain HB2151 was infected with an antigen-positive phage clone, previously screened by enzyme-linked immunosorbent assay (ELISA), to express soluble ScFv fragments. Functional soluble ScFv binding to the idiotypic antibody OC125 F(ab')2 could be detected in the bacterial periplasm by Western blot and ELISA. The variable heavy- and light-chain genes of the ACA125 ScFv fragment were further sequenced and compared with known antibody sequences.

  18. In situ inhibition of primary production due to ultraviolet radiation in Antarctica

    SciTech Connect

    Helbling, E.W.; Villafane, V.E.; Holm-Hansen, O.

    1994-12-31

    Inhibition of photosynthesis due to ultra radiation (UVR) in antarctic phytoplankton has been documented by many authors. Most of these studies have used temperature-controlled incubators in which phytoplankton are exposed to either solar radiation or to UV-visible radiation provided by lamps. Although such experiments are invaluable for determining the effects of solar radiation on the metabolic activity of phytoplankton, they suffer from the fact that the cells will not be exposed to the same spectral irradiance that they would experience at various depths in the water column. The use of in situ incubations of natural phytoplankton assemblages provides the most direct and most realistic procedure to determine the effect of solar UVR on rates of primary production. In this paper, preliminary data obtained from such in situ incubations carried out from October through December 1993 at Palmer Station (64.7{degrees}S 64.1{degrees}W) on Anvers Island, Antarctica is reported. 6 refs., 2 figs.

  19. Fragmentation of monoclonal antibodies

    PubMed Central

    Vlasak, Josef

    2011-01-01

    Fragmentation is a degradation pathway ubiquitously observed in proteins despite the remarkable stability of peptide bond; proteins differ only by how much and where cleavage occurs. The goal of this review is to summarize reports regarding the non-enzymatic fragmentation of the peptide backbone of monoclonal antibodies (mAbs). The sites in the polypeptide chain susceptible to fragmentation are determined by a multitude of factors. Insights are provided on the intimate chemical mechanisms that can make some bonds prone to cleavage due to the presence of specific side-chains. In addition to primary structure, the secondary, tertiary and quaternary structures have a significant impact in modulating the distribution of cleavage sites by altering local flexibility, accessibility to solvent or bringing in close proximity side chains that are remote in sequence. This review focuses on cleavage sites observed in the constant regions of mAbs, with special emphasis on hinge fragmentation. The mechanisms responsible for backbone cleavage are strongly dependent on pH and can be catalyzed by metals or radicals. The distribution of cleavage sites are different under acidic compared to basic conditions, with fragmentation rates exhibiting a minimum in the pH range 5–6; therefore, the overall fragmentation pattern observed for a mAb is a complex result of structural and solvent conditions. A critical review of the techniques used to monitor fragmentation is also presented; usually a compromise has to be made between a highly sensitive method with good fragment separation and the capability to identify the cleavage site. The effect of fragmentation on the function of a mAb must be evaluated on a case-by-case basis depending on whether cleavage sites are observed in the variable or constant regions, and on the mechanism of action of the molecule. PMID:21487244

  20. Preventing phage lysis of Lactococcus lactis in cheese production using a neutralizing heavy-chain antibody fragment from llama.

    PubMed

    Ledeboer, A M; Bezemer, S; de Hiaard, J J W; Schaffers, I M; Verrips, C T; van Vliet, C; Düsterhöft, E M; Zoon, P; Moineau, S; Frenken, L G J

    2002-06-01

    Bacteriophage infection is still a persistent problem in large dairy processes despite extensive studies over the last decades. Consequently, new methods are constantly sought to prevent phage infection. In this paper, we show that phage neutralizing heavy-chain antibody fragments, obtained from Camelidae and produced at a large scale in the generally regarded as safe microorganism Saccharomyces cerevisiae, can effectively be used to impede phage induced lysis during a cheese process. The growth inhibition of the cheese starter culture by 10(5) pfu/ml cheese-milk of the small isometric-headed 936-type phage p2 was prevented by the addition of only 0.1 microg/ml (7 nM) of the neutralizing antibody fragment. The use of such antibody fragments in cheese manufacturing are a realistic and interesting option because of the small amount of antibody fragments that are needed. Moreover the antibodies are produced in a food grade microorganism and can easily be isolated from the fermentation liquid in a pure and DNA free form.

  1. Can Wet Rocky Granular Flows Become Debris Flows Due to Fine Sediment Production by Abrasion?

    NASA Astrophysics Data System (ADS)

    Arabnia, O.; Sklar, L. S.; Bianchi, G.; Mclaughlin, M. K.

    2015-12-01

    Debris flows are rapid mass movements in which elevated pore pressures are sustained by a viscous fluid matrix with high concentrations of fine sediments. Debris flows may form from coarse-grained wet granular flows as fine sediments are entrained from hillslope and channel material. Here we investigate whether abrasion of the rocks within a granular flow can produce sufficient fine sediments to create debris flows. To test this hypothesis experimentally, we used a set of 4 rotating drums ranging from 0.2 to 4.0 m diameter. Each drum has vanes along the boundary ensure shearing within the flow. Shear rate was varied by changing drum rotational velocity to maintain a constant Froude Number across drums. Initial runs used angular clasts of granodiorite with a tensile strength of 7.6 MPa, with well-sorted coarse particle size distributions linearly scaled with drum radius. The fluid was initially clear water, which rapidly acquired fine-grained wear products. After each 250 m tangential distance, we measured the particle size distributions, and then returned all water and sediment to the drums for subsequent runs. We calculate particle wear rates using statistics of size and mass distributions, and by fitting the Sternberg equation to the rate of mass loss from the size fraction > 2mm. Abundant fine sediments were produced in the experiments, but very little change in the median grain size was detected. This appears to be due to clast rounding, as evidenced by a decrease in the number of stable equilibrium resting points. We find that the growth in the fine sediment concentration in the fluid scales with unit drum power. This relationship can be used to estimate fine sediment production rates in the field. We explore this approach at Inyo Creek, a steep catchment in the Sierra Nevada, California. There, a significant debris flow occurred in July 2013, which originated as a coarse-grained wet granular flow. We use surveys to estimate flow depth and velocity where super

  2. Valuing productivity loss due to absenteeism: firm-level evidence from a Canadian linked employer-employee survey.

    PubMed

    Zhang, Wei; Sun, Huiying; Woodcock, Simon; Anis, Aslam H

    2017-12-01

    In health economic evaluation studies, to value productivity loss due to absenteeism, existing methods use wages as a proxy value for marginal productivity. This study is the first to test the equality between wage and marginal productivity losses due to absenteeism separately for team workers and non-team workers. Our estimates are based on linked employer-employee data from Canada. Results indicate that team workers are more productive and earn higher wages than non-team workers. However, the productivity gap between these two groups is considerably larger than the wage gap. In small firms, employee absenteeism results in lower productivity and wages, and the marginal productivity loss due to team worker absenteeism is significantly higher than the wage loss. No similar wage-productivity gap exists for large firms. Our findings suggest that productivity loss or gain is most likely to be underestimated when valued according to wages for team workers. The findings help to value the burden of illness-related absenteeism. This is important for economic evaluations that seek to measure the productivity gain or loss of a health care technology or intervention, which in turn can impact policy makers' funding decisions.

  3. Bacterial production and structure-functional validation of a recombinant antigen-binding fragment (Fab) of an anti-cancer therapeutic antibody targeting epidermal growth factor receptor.

    PubMed

    Kim, Ji-Hun; Sim, Dae-Won; Park, Dongsun; Jung, Tai-Geun; Lee, Seonghwan; Oh, Taeheun; Ha, Jong-Ryul; Seok, Seung-Hyeon; Seo, Min-Duk; Kang, Ho Chul; Kim, Young Pil; Won, Hyung-Sik

    2016-12-01

    Fragment engineering of monoclonal antibodies (mAbs) has emerged as an excellent paradigm to develop highly efficient therapeutic and/or diagnostic agents. Engineered mAb fragments can be economically produced in bacterial systems using recombinant DNA technologies. In this work, we established recombinant production in Escherichia coli for monovalent antigen-binding fragment (Fab) adopted from a clinically used anticancer mAB drug cetuximab targeting epidermal growth factor receptor (EGFR). Recombinant DNA constructs were designed to express both polypeptide chains comprising Fab in a single vector and to secrete them to bacterial periplasmic space for efficient folding. Particularly, a C-terminal engineering to confer an interchain disulfide bond appeared to be able to enhance its heterodimeric integrity and EGFR-binding activity. Conformational relevance of the purified final product was validated by mass spectrometry and crystal structure at 1.9 Å resolution. Finally, our recombinant cetuximab-Fab was found to have strong binding affinity to EGFR overexpressed in human squamous carcinoma model (A431) cells. Its binding ability was comparable to that of cetuximab. Its EGFR-binding affinity was estimated at approximately 0.7 nM of Kd in vitro, which was quite stronger than the binding affinity of natural ligand EGF. Hence, the results validate that our construction could serve as an efficient platform to produce a recombinant cetuximab-Fab with a retained antigen-binding functionality.

  4. Avoiding Misannotation of In-Source Fragmentation Products as Cellular Metabolites in Liquid Chromatography–Mass Spectrometry-Based Metabolomics

    SciTech Connect

    Xu, Yi-Fan; Lu, Wenyun; Rabinowitz, Joshua D.

    2015-01-15

    Liquid chromatography–mass spectrometry (LC-MS) technology allows for rapid quantitation of cellular metabolites, with metabolites identified by mass spectrometry and chromatographic retention time. Recently, with the development of rapid scanning high-resolution high accuracy mass spectrometers and the desire for high throughput screening, minimal or no chromatographic separation has become increasingly popular. Furthermore, when analyzing complex cellular extracts, however, the lack of chromatographic separation could potentially result in misannotation of structurally related metabolites. Here, we show that, even using electrospray ionization, a soft ionization method, in-source fragmentation generates unwanted byproducts of identical mass to common metabolites. For example, nucleotide-triphosphates generate nucleotide-diphosphates, and hexose-phosphates generate triose-phosphates. We also evaluated yeast intracellular metabolite extracts and found more than 20 cases of in-source fragments that mimic common metabolites. Finally and accordingly, chromatographic separation is required for accurate quantitation of many common cellular metabolites.

  5. Avoiding Misannotation of In-Source Fragmentation Products as Cellular Metabolites in Liquid Chromatography–Mass Spectrometry-Based Metabolomics

    DOE PAGES

    Xu, Yi-Fan; Lu, Wenyun; Rabinowitz, Joshua D.

    2015-01-15

    Liquid chromatography–mass spectrometry (LC-MS) technology allows for rapid quantitation of cellular metabolites, with metabolites identified by mass spectrometry and chromatographic retention time. Recently, with the development of rapid scanning high-resolution high accuracy mass spectrometers and the desire for high throughput screening, minimal or no chromatographic separation has become increasingly popular. Furthermore, when analyzing complex cellular extracts, however, the lack of chromatographic separation could potentially result in misannotation of structurally related metabolites. Here, we show that, even using electrospray ionization, a soft ionization method, in-source fragmentation generates unwanted byproducts of identical mass to common metabolites. For example, nucleotide-triphosphates generate nucleotide-diphosphates, andmore » hexose-phosphates generate triose-phosphates. We also evaluated yeast intracellular metabolite extracts and found more than 20 cases of in-source fragments that mimic common metabolites. Finally and accordingly, chromatographic separation is required for accurate quantitation of many common cellular metabolites.« less

  6. Fragmentation of methane molecules by antiproton impact

    NASA Astrophysics Data System (ADS)

    Salehzadeh, Arash; Kirchner, Tom

    2016-09-01

    Extending previous work for proton impact, we have investigated the fragmentation of methane molecules due to collisions with antiprotons in the 25 keV to 5 MeV impact energy range. The multi-center nature of the problem is addressed by using a spectral representation of the molecular Hartree-Fock-level Hamiltonian and a single-center expansion of the initially populated molecular orbitals. The two-center basis generator method (TC-BGM) is used for orbital propagation. Electron-removal cross sections obtained from the TC-BGM solutions are complemented with a dynamical decay-route fragmentation model to calculate cross sections for the production of fragment ions. Good agreement with the available experimental data is observed for CH4+,CH3+,CH2+and CH+. Work supported by NSERC, Canada.

  7. An update on the measurement of productivity losses due to rheumatoid diseases.

    PubMed

    Zhang, Wei; Chiu, Judy A; Bansback, Nick; Anis, Aslam H

    2012-10-01

    Many health systems are interested in the impact of disease and interventions on non-health outcomes. Over the last 10 years, work productivity has become one of the most important topics. This study was conducted to review guidelines for economic evaluations worldwide to identify how views on the types of productivity costs to be included differ across jurisdictions and to review recent trials that have measured productivity losses to identify trends and compare consistency with guidelines from different jurisdictions. The guidelines from 28 countries were evaluated and only 12 required productivity costs to be included in the main analysis or the base case analysis. Little specific guidance was provided around the types of productivity costs to be included. Correspondingly, we identified only 10 trials that explicitly measured productivity outcomes and all were conducted after the year 2001. While there was a growth in the proportion of trials evaluating biologics to measure this outcome, it showed that fewer than 50% of even recent studies failed to measure or report productivity. Furthermore, most trials did not use a standard and validated questionnaire to measure all productivity loss components. In conclusion, whether the rationale for the exclusion of productivity impacts is that healthcare budgets should only be concerned with health impacts and ignore general social welfare impacts or whether productivity impacts should be ignored to maintain generational equity or whether the methodology of productivity measurement leads to imprecise estimates, the reality is that productivity impacts are real and to ignore them is tantamount to not being fully accountable to our citizenry.

  8. Most cases of cryptococcal meningitis in HIV-uninfected patients in Vietnam are due to a distinct amplified fragment length polymorphism-defined cluster of Cryptococcus neoformans var. grubii VN1.

    PubMed

    Day, Jeremy N; Hoang, Thu N; Duong, Anh V; Hong, Chau T T; Diep, Pham T; Campbell, James I; Sieu, Tran P M; Hien, Tran T; Bui, Tien; Boni, Maciej F; Lalloo, David G; Carter, Dee; Baker, Stephen; Farrar, Jeremy J

    2011-02-01

    Cryptococcal disease most commonly occurs in patients with an underlying immune deficit, most commonly HIV infection, and is due to Cryptococcus neoformans var. grubii. Occasionally disease due to this variety occurs in apparently immunocompetent patients. The relationship between strains infecting immunosuppressed and immunocompetent patients is not clear. Amplified fragment length polymorphism (AFLP) analysis was used to characterize the relationship between strains infecting HIV-infected and uninfected patients. Isolates from 51 HIV-uninfected patients and 100 HIV-infected patients with cryptococcal meningitis were compared. C. neoformans var. grubii VNI was responsible for infections in 73% of HIV-uninfected and 100% of HIV-infected patients. AFLP analysis defined two distinct clusters, VNIγ and VNIδ. The majority (84%) of isolates from HIV-uninfected patients were VNIγ, compared with only 38% of isolates from HIV-infected patients (odds ratio, 8.30; 95% confidence interval [CI], 3.04 to 26.6; P < 0.0001). In HIV-uninfected patients, underlying disease was less frequent in those with VNIγ infections. Two clusters of C. neoformans var. grubii VN1 are responsible for the majority of cases of cryptococcal meningitis in Vietnam. The distribution of these clusters differs according to the immune status of the host.

  9. Fragmentation Processes

    NASA Astrophysics Data System (ADS)

    Whelan, Colm T.

    2012-12-01

    Preface; 1. Direct and resonant double-photoionization: from atoms to solids L. Avaldi and G. Stefani; 2. The application of propagation exterior complex scaling to atomic collisions P. L. Bartlett and A. T. Stelbovics; 3. Fragmentation of molecular-ion beams in intense ultra-short laser pulses I. Ben-Itzhak; 4. Atoms with one and two active electrons in strong laser fields I. A. Ivanov and A. S. Kheifets; 5. Experimental aspects of ionization studies by positron and positronium impact G. Laricchia, D. A. Cooke, Á. Kövér and S. J. Brawley; 6. (e,2e) spectroscopy using fragmentation processes J. Lower, M. Yamazaki and M. Takahashi; 7. A coupled pseudostate approach to the calculation of ion-atom fragmentation processes M. McGovern, H. R. J. Walters and C. T. Whelan; 8. Electron Impact Ionization using (e,2e) coincidence techniques from threshold to intermediate energies A. J. Murray; 9. (e,2e) processes on atomic inner shells C. T. Whelan; 10. Spin resolved atomic (e,2e) processes J. Lower and C. T. Whelan; Index.

  10. Assessing the transfer of risk due to transportation of agricultural products.

    PubMed

    Li, Pei-Chiun; Shih, Hsiu-Ching; Ma, Hwong-Wen

    2015-02-01

    Health risk assessment (HRA) is the process used to estimate adverse health effects on humans. The importance and sensitivity of food chains to HRA have been observed, but the impact of the transportation of food has generally been ignored. This study developed an exposure assessment to demonstrate the significance of the transportation of agricultural products in HRA. The associated case study estimated the health risks derived from various sources of arsenic emissions in Taiwan. Two assessment scenarios, self-sufficiency and transportation of agricultural products, were compared to calculate risk transfer ratios that show the impact of agriculture transportation. The risk transfer ratios found by the study range from 0.22 to 42.10, indicating that the quantity of transportation of agricultural products is the critical factor. High air deposition and high agricultural production are the two main contributors to the effect of the transportation of agricultural products on HRA. Risk reduction measures could be applied to high-pollution areas as well as to areas with high agricultural productivity to reduce ingestion risks to residents. Certain areas that are sensitive to the transportation of agricultural products may incur more risks if emissions increase in agriculturally productive counties.

  11. Separation of fission products based on ionic liquids: Task-specific ionic liquids containing an aza-crown ether fragment

    SciTech Connect

    Luo, Huimin; Dai, Sheng; Bonnesen, Peter V; Buchanan III, A C

    2005-01-01

    A new class of task-specific ionic liquids (TSILs) based on the covalent attachment of imidazolium cations to a monoaza-crown ether fragment has been synthesized and characterized. The efficacy of these TSILs for the biphasic extraction of Cs(+) and Sr(2+) from aqueous solutions has been evaluated. The extraction properties of these TSILs can be influenced by the structures of the covalently attached imidazolium cations, which highlight the possibilities to enhance or tune the selectivities of crown ethers toward target ionic species through the covalent coupling with the imidazolium cations. (c) 2005 Elsevier B.V. All rights reserved.

  12. Sex Determination from Fragmented and Degenerated DNA by Amplified Product-Length Polymorphism Bidirectional SNP Analysis of Amelogenin and SRY Genes.

    PubMed

    Masuyama, Kotoka; Shojo, Hideki; Nakanishi, Hiroaki; Inokuchi, Shota; Adachi, Noboru

    2017-01-01

    Sex determination is important in archeology and anthropology for the study of past societies, cultures, and human activities. Sex determination is also one of the most important components of individual identification in criminal investigations. We developed a new method of sex determination by detecting a single-nucleotide polymorphism in the amelogenin gene using amplified product-length polymorphisms in combination with sex-determining region Y analysis. We particularly focused on the most common types of postmortem DNA damage in ancient and forensic samples: fragmentation and nucleotide modification resulting from deamination. Amplicon size was designed to be less than 60 bp to make the method more useful for analyzing degraded DNA samples. All DNA samples collected from eight Japanese individuals (four male, four female) were evaluated correctly using our method. The detection limit for accurate sex determination was determined to be 20 pg of DNA. We compared our new method with commercial short tandem repeat analysis kits using DNA samples artificially fragmented by ultraviolet irradiation. Our novel method was the most robust for highly fragmented DNA samples. To deal with allelic dropout resulting from deamination, we adopted "bidirectional analysis," which analyzed samples from both sense and antisense strands. This new method was applied to 14 Jomon individuals (3500-year-old bone samples) whose sex had been identified morphologically. We could correctly identify the sex of 11 out of 14 individuals. These results show that our method is reliable for the sex determination of highly degenerated samples.

  13. Sex Determination from Fragmented and Degenerated DNA by Amplified Product-Length Polymorphism Bidirectional SNP Analysis of Amelogenin and SRY Genes

    PubMed Central

    Masuyama, Kotoka; Shojo, Hideki; Nakanishi, Hiroaki; Inokuchi, Shota; Adachi, Noboru

    2017-01-01

    Sex determination is important in archeology and anthropology for the study of past societies, cultures, and human activities. Sex determination is also one of the most important components of individual identification in criminal investigations. We developed a new method of sex determination by detecting a single-nucleotide polymorphism in the amelogenin gene using amplified product-length polymorphisms in combination with sex-determining region Y analysis. We particularly focused on the most common types of postmortem DNA damage in ancient and forensic samples: fragmentation and nucleotide modification resulting from deamination. Amplicon size was designed to be less than 60 bp to make the method more useful for analyzing degraded DNA samples. All DNA samples collected from eight Japanese individuals (four male, four female) were evaluated correctly using our method. The detection limit for accurate sex determination was determined to be 20 pg of DNA. We compared our new method with commercial short tandem repeat analysis kits using DNA samples artificially fragmented by ultraviolet irradiation. Our novel method was the most robust for highly fragmented DNA samples. To deal with allelic dropout resulting from deamination, we adopted “bidirectional analysis,” which analyzed samples from both sense and antisense strands. This new method was applied to 14 Jomon individuals (3500-year-old bone samples) whose sex had been identified morphologically. We could correctly identify the sex of 11 out of 14 individuals. These results show that our method is reliable for the sex determination of highly degenerated samples. PMID:28052096

  14. A thermodynamic theory of dynamic fragmentation

    SciTech Connect

    Yew, Ching H.; Taylor, P.A.

    1993-08-01

    We present a theory of dynamic fragmentation of brittle materials based on thermodynamic arguments. We recover the expressions for average fragment size and number as originally derived by Grady. We extend the previous work by obtaining descriptions of fragment size distribution and compressibility change due to the fragmentation process. The size distribution is assumed to be proportional to the spectral power of the strain history and a sample distribution is presented for a fragmentation process corresponding to a constant rate strain history. The description of compressibility change should be useful in computational studies of fragmentation. These results should provide insight into the process of fragmentation of brittle materials from hypervelocity impact.

  15. Parasitic production of slow RI-beam from a projectile fragment separator by ion guide Laser Ion Source (PALIS)

    NASA Astrophysics Data System (ADS)

    Sonoda, Tetsu

    2009-10-01

    The projectile fragment separator BigRIPS of RIBF at RIKEN provides a wide variety of short-lived radioactive isotope (RI) ions without restrictions on their lifetime or chemical properties. A universal slow RI-beam facility (SLOWRI) to decelerate the beams from BigRIPS using an RF-carpet ion guide has been proposed as a principal facility of RIBF. However, beam time at such a modern accelerator facility is always limited and operational costs are high. We therefore propose an additional scheme as a complementary option to SLOWRI to drastically enhance the usability of such an expensive facility. In BigRIPS, a single primary beam produces thousands of isotopes but only one isotope is used for an experiment while the other >99.99% of isotopes are simply dumped in the slits or elsewhere in the fragment separator. We plan to locate a compact gas cell with 1 bar Ar at the slits. The thermalized ions in the cell will be quickly neutralized and transported to the exit by gas flow and resonantly re-ionized by lasers. Such low energy RI-beams will always be provided without any restriction to the main experiment. It will allow us to run parasitic experiments for precision atomic or decay spectroscopy, mass measurements. Furthermore, the resonance ionization in the cell itself can be used for high-sensitive laser spectroscopy, which will expand our knowledge of the ground state property of unstable nuclei.

  16. Production of fine structures in type III solar radio bursts due to turbulent density profiles

    SciTech Connect

    Loi, Shyeh Tjing; Cairns, Iver H.; Li, Bo

    2014-07-20

    Magnetic reconnection events in the corona release energetic electron beams along open field lines, and the beams generate radio emission at multiples of the electron plasma frequency f{sub p} to produce type III solar radio bursts. Type III bursts often exhibit irregularities in the form of flux modulations with frequency and/or local temporal advances and delays, and a type IIIb burst represents the extreme case where a type III burst is fragmented into a chain of narrowband features called striae. Remote and in situ spacecraft measurements have shown that density turbulence is ubiquitous in the corona and solar wind, and often exhibits a Kolmogorov power spectrum. In this work, we numerically investigate the effects of one-dimensional macroscopic density turbulence (along the beam direction) on the behavior of type III bursts, and find that this turbulence produces stria-like fine structures in the dynamic spectra of both f{sub p} and 2 f{sub p} radiation. Spectral and temporal fine structures in the predicted type III emission are produced by variations in the scattering path lengths and group speeds of radio emission, and in the locations and sizes of emitting volumes. Moderate turbulence levels yield flux enhancements with much broader half-power bandwidths in f{sub p} than 2 f{sub p} emission, possibly explaining the often observed type IIIb-III harmonic pairs as being where intensifications in 2 f{sub p} radiation are not resolved observationally. Larger turbulence levels producing trough-peak regions in the plasma density profile may lead to broader, resolvable intensifications in 2 f{sub p} radiation, which may account for the type IIIb-IIIb pairs that are sometimes observed.

  17. Potential restrictions for CO2 sequestration sites due to shale and tight gas production.

    PubMed

    Elliot, T R; Celia, M A

    2012-04-03

    Carbon capture and geological sequestration is the only available technology that both allows continued use of fossil fuels in the power sector and reduces significantly the associated CO(2) emissions. Geological sequestration requires a deep permeable geological formation into which captured CO(2)can be injected, and an overlying impermeable formation, called a caprock, that keeps the buoyant CO(2) within the injection formation. Shale formations typically have very low permeability and are considered to be good caprock formations. Production of natural gas from shale and other tight formations involves fracturing the shale with the explicit objective to greatly increase the permeability of the shale. As such, shale gas production is in direct conflict with the use of shale formations as a caprock barrier to CO(2) migration. We have examined the locations in the United States where deep saline aquifers, suitable for CO(2) sequestration, exist, as well as the locations of gas production from shale and other tight formations. While estimated sequestration capacity for CO(2) sequestration in deep saline aquifers is large, up to 80% of that capacity has areal overlap with potential shale-gas production regions and, therefore, could be adversely affected by shale and tight gas production. Analysis of stationary sources of CO(2) shows a similar effect: about two-thirds of the total emissions from these sources are located within 20 miles of a deep saline aquifer, but shale and tight gas production could affect up to 85% of these sources. These analyses indicate that colocation of deep saline aquifers with shale and tight gas production could significantly affect the sequestration capacity for CCS operations. This suggests that a more comprehensive management strategy for subsurface resource utilization should be developed.

  18. Factors associated with recovery of meat products following recalls due to Shiga toxin-producing Escherichia coli.

    PubMed

    Seys, S A; Sampedro, F; Hedberg, C W

    2016-10-01

    Food-product recall data for recalls due to Shiga toxin-producing Escherichia coli (STEC) from 2000 to 2012 were obtained for establishments regulated by the United States Department of Agriculture, Food Safety and Inspection Service (FSIS). Statistical tests were used to assess the factors associated with recovery of product following STEC recalls along with the relationship between cluster detection and jurisdictions. Our results indicated that the percentage of recalled product recovered following a recall action due to STEC was dependent on the complexity of distribution, type of distribution, amount of time between production and recall dates, and the number of pounds of product recalled. Illness-related STEC recalls were associated with a lower percentage of product recovery which was probably impacted by larger amounts of product recalled, broader production scope, and delays from epidemiological and traceback investigations. Further, detection of illnesses related to STEC recalls seemed to be enhanced in states with additional resources and a history of successful foodborne investigations. This makes an argument for additional resources dedicated to public health agencies specifically for the surveillance of foodborne illnesses.

  19. Possible Increase in Nitric Oxide Production by Lightning Discharges Due to Catalytic Effects of Ice Particles

    NASA Technical Reports Server (NTRS)

    Peterson, Harold; Beasley, William

    2011-01-01

    We address the question of whether ice crystals with habits typically encountered by lightning discharges may serve as catalysts for the production of NOx by lightning. If so, and if the effect is sufficiently large, it would need to be taken into account in estimates of global NOx production by lightning. In this study, we make a series of plausible assumptions about the temperatures and concentrations of reactant species in the environment of discharges and we postulate a mechanism by which ice crystals could adsorb nitrogen atoms. We then compare production rates between uncatalyzed and catalyzed reactions at 2000 K, 3000 K, and 4000 K, temperatures observed in lightning channels during the cool-down period after a return stroke. Catalyzed NO production rates are greater at 2000 K, whereas uncatalyzed production occurs most rapidly at 4000 K. The channel temperature stays around 2000 K for a longer period of time than at 4000 K. The longer residence time at 2000 K is sufficient to allow fresh reactants to participate in the mix in. Therefore, our results suggest that nearly three times as much NO per flash is produced by ice-catalyzed reactions as compared with uncatalyzed reactions.

  20. Dynamical regimes due to technological change in a microeconomical model of production.

    PubMed

    Hamacher, K

    2012-09-01

    We develop a microeconomical model to investigate the impact of technological change onto production decisions of suppliers-modeling an effective feedback mechanism of the market. An important property-the time horizon of production planning-is related to the Kolmogorov entropy of the one-dimensional maps describing price dynamics. We simulate this price dynamics in an ensemble representing the whole macroeconomy. We show how this model can be used to support ongoing research in economic growth and incorporate the obtained microeconomic findings into the discussion about appropriate macroeconomic quantities such as the production function-thus effectively underpinning macroeconomics with microeconomical dynamics. From there we can show that the model exhibits different dynamical regimes (suggesting "phase transitions") with respect to an order parameter. The non-linear feedback under technological change was found to be the crucial mechanism. The implications of the obtained regimes are finally discussed.

  1. Changes in the TRMM Version-5 and Version-6 Precipitation Radar Products Due to Orbit Boost

    NASA Technical Reports Server (NTRS)

    Liao, Liang; Meneghini, Robert

    2010-01-01

    The performance of the version-5 and version-6 Tropical Rainfall Measuring Mission (TRMM) Precipitation Radar (PR) products before and after the satellite orbit boost is assessed through a series of comparisons with Weather Surveillance Radar (WSR)-88D ground-based radar in Melbourne, Florida. Analysis of the comparisons of radar reflectivity near the storm top from the ground radar and both versions of the PR indicates that the PR bias relative to the WSR radar at Melbourne is on the order of 1dB for both pre- and post-boost periods, indicating that the PR products maintain accurate calibration after the orbit boost. Comparisons with the WSR-88D near-surface reflectivity factors indicate that both versions of the PR products accurately correct for attenuation in stratiform rain. However, in convective rain, both versions exhibit negative biases in the near-surface radar reflectivity with version-6 products having larger negative biases than version-5. Rain rate comparisons between the ground and space radars show similar characteristics

  2. Pea (Pisum sativum) Seed Production as an Assay for Reproductive Effects Due to Herbicides.

    EPA Science Inventory

    Even though herbicide drift can affect plant reproduction, current plant testing protocols emphasize effects on vegetative growth. In this study, we determined whether a short–growing season plant can indicate potential effects of herbicides on seed production. Pea (Pisum sativum...

  3. Genome changes due to forty years of artificial selection associated with divergent dairy production and reproduction

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Artificial selection in dairy cattle since 1964 has achieved steady increase in milk production that was accompanied by unintended declines in fertility. Direct comparison of 45,878 SNPs between a group of Holstein cattle unselected since 1964 and the contemporary Holsteins was conducted to identify...

  4. Changes in thermodynamic conditions of the Ahuachapán reservoir due to production and injection

    USGS Publications Warehouse

    Steingrimsson, B.; Aunzo, Z.; Bodvarsson, G.S.; Truesdell, A.; Cuellar, G.; Escobar, C.; Quintanilla, A.

    1991-01-01

    Since large-scale exploitation of the Ahuachapán reservoir began in 1975 large changes in the reservoir thermodynamic conditions have occurred. Drawdown of up to 15 bars and significant temperature changes have been observed in the wellfield. Temperatures have declined due to boiling in the reservoir in response to the pressure drawdown; localized and minor cooling due to reinjection of spent geothermal fluids have also been observed. There are indications of cold fluid influx deep into the reservoir from the west and north. Reservoir temperatures show that a significant amount of hot fluid recharge comes to the wellfield from the southeast, and temperatures also indicate that the recharge rate has increased with time as pressure declines in the reservoir. Chemical analyses of the produced fluids show that most wells are fed by a mixture of geothermal fluids and cooler, less-saline waters. The cold water inflow has increased due to exploitation, as demonstrated by decreased salinity of the produced fluids.

  5. Cross sections for the production of fragments with Z greater than or equal to 8 by fragmentation of Z greater than or equal to 9 and less than or equal to 26 nuclei

    NASA Technical Reports Server (NTRS)

    Heinrich, W.; Drechsel, H.; Brechtmann, C.; Beer, J.

    1985-01-01

    Charge changing nuclear collisions in plastic nuclear track detectors were studied using a new experimental technique of automatic track measurement for etched tracks in plastic detectors. Partial cross sections for the production of fragments of charge Z approximately 8 were measured for projectile nuclei of charge 9 approximately Z approximately 26 in the detector material CR39 and in silver. for this purpose three independent experiments were performed using Bevalac beams. The first one was an exposure of a stack of CR39 plastic plates to 1.8 GeV/nucl. Ar-40 nuclei. The second one was an exposure of another CR39 stack of 1.7 GeV/nucl. Fe-56 projectiles. In the third experiment a mixed stack of CR39 plates and silver foils was irradiated with 1.7 GeV/nucl. Fe-56 nuclei. Thus the measurement of nuclear cross sections in a light target (CR39 = C12H18O7) and as well in a heavy target (silver) was possible.

  6. Contact dermatitis due to 2,2'-azobis(2-amidinopropane) dihydrochloride: an outbreak in production workers.

    PubMed

    Takiwaki, H; Arase, S; Nakayama, H

    1998-07-01

    2,2'-azobis(2-amidinopropane) dihydrochloride (AAPH) is an azo compound which has been used as a radical chain initiator. The purpose of this study was to confirm contact sensitivity to AAPH in individuals who were engaged in the production of AAPH, and presented with prolonged eczematous eruptions mainly on exposed areas. Patch testing was carried out with AAPH (1 and 5% aq.) on 8 patients and 6 healthy volunteers who had never been exposed to this chemical. All patients showed a strong positive patch test reaction to this agent, while all control subjects showed negative results. Because this chemical has recently been used for studies on the oxidation of biological materials, not only production workers in the chemical industry but also medical researchers should avoid prolonged exposure to this agent.

  7. Investigation of sulphur isotope variation due to different processes applied during uranium ore concentrate production.

    PubMed

    Krajkó, Judit; Varga, Zsolt; Wallenius, Maria; Mayer, Klaus; Konings, Rudy

    The applicability and limitations of sulphur isotope ratio as a nuclear forensic signature have been studied. The typically applied leaching methods in uranium mining processes were simulated for five uranium ore samples and the n((34)S)/n((32)S) ratios were measured. The sulphur isotope ratio variation during uranium ore concentrate (UOC) production was also followed using two real-life sample sets obtained from industrial UOC production facilities. Once the major source of sulphur is revealed, its appropriate application for origin assessment can be established. Our results confirm the previous assumption that process reagents have a significant effect on the n((34)S)/n((32)S) ratio, thus the sulphur isotope ratio is in most cases a process-related signature.

  8. Occupational Health Impacts Due to Exposure to Organic Chemicals over an Entire Product Life Cycle.

    PubMed

    Kijko, Gaël; Jolliet, Olivier; Margni, Manuele

    2016-12-06

    This article presents an innovative approach to include occupational exposures to organic chemicals in life cycle impact assessment (LCIA) by building on the characterization factors set out in Kijko et al. (2015) to calculate the potential impact of occupational exposure over the entire supply chain of product or service. Based on an economic input-output model and labor and economic data, the total impacts per dollar of production are provided for 430 commodity categories and range from 0.025 to 6.6 disability-adjusted life years (DALY) per million dollar of final economic demand. The approach is applied on a case study assessing human health impacts over the life cycle of a piece of office furniture. It illustrates how to combine monitoring data collected at the manufacturing facility and averaged sector specific data to model the entire supply chain. This paper makes the inclusion of occupational exposure to chemicals fully compatible with the LCA framework by including the supply chain of a given production process and will help industries focus on the leading causes of human health impacts and prevent impact shifting.

  9. Acute hepatitis due to shen-min: a herbal product derived from Polygonum multiflorum.

    PubMed

    Cárdenas, Andrés; Restrepo, Juan Carlos; Sierra, Fernando; Correa, Gonzalo

    2006-08-01

    Shen-Min is a herbal product sold as a supplement for women to enhance hair growth. It is widely available across Asia, Europe, and the United States and sold without prescription as a hair nutritional supplement. We describe a case of acute liver injury in a 28-year-old white woman who developed symptomatic hepatitis 8 weeks after starting Shen-Min. All other potential causes of acute hepatitis including viral, hypoxic/ischemic, metabolic, and autoimmune etiologies were excluded. The liver injury slowly resolved over 3 weeks after discontinuing the herbal product. Although the mechanism of Shen-Min hepatotoxicity is unknown, we suspect an idiosyncratic reaction because the patient developed a fine maculopapular rash, mild eosinophilia, and did not overdose. Shen-Min is a Chinese herbal product with a mixture of several plants and vitamins including Polygonum multiflorum, a root that has been previously associated with hepatotoxicity. Nonetheless to our knowledge this is the first reported case of herbal-induced hepatotoxicity in a patient taking Shen-Min per se. Clinicians taking care of patients with acute hepatitis of unclear etiology should be aware that the consumption of Shen-Min, a hair supplement widely available in the United States and Western countries might cause acute hepatitis.

  10. Unfolding properties of recombinant human serum albumin products are due to bioprocessing steps.

    PubMed

    Lang, Brian E; Cole, Kenneth D

    2015-01-01

    We have used differential scanning calorimetry (DSC) to determine the unfolding properties of commercial products of human serum albumin (HSA) prepared from pooled human blood, transgenic yeast, and transgenic rice. The initial melting temperatures (Tm1 ) for the unfolding transitions of the HSA products varied from 62°C to 75°C. We characterized the samples for purity, fatty acid content, and molecular weight. The effects of adding fatty acids, heat pasteurization, and a low pH defatting technique on the transition temperatures were measured. Defatted HSA has a structure with the lowest stability (Tm of ∼62°C). When fatty acids are bound to HSA, the structure is stabilized (Tm of ∼64-72°C), and prolonged heating (pasteurization at 60°C) results in a heat-stabilized structural form containing fatty acids (Tm of ∼75-80°C). This process was shown to be reversible by a low pH defatting step. This study shows that the fatty acid composition and bioprocessing history of the HSA commercial products results in the large differences in the thermal stability.

  11. ESA DUE GlobTemperature project: Infrared-based LST Product

    NASA Astrophysics Data System (ADS)

    Ermida, Sofia; Pires, Ana; Ghent, Darren; Trigo, Isabel; DaCamara, Carlos; Remedios, John

    2016-04-01

    One of the purposes of the GlobTemperature project is to provide a product of global Land Surface Temperature (LST) based on Geostationary Earth Orbit (GEO) and Low Earth polar Orbit (LEO) satellite data. The objective is to use existing LST products, which are obtained from different sensors/platforms, combining them into a harmonized product for a reference view angle. In a first approach, only infra-red based retrievals are considered, and LEO LSTs will be used as a common denominator among geostationary sensors. LST data is provided by a wide range of sensors to optimize spatial coverage, namely: (i) 2 LEO sensors - the Advanced Along Track Scanning Radiometer (AATSR) series of instruments on-board ESA's Envisat, and the Moderate Resolution Imaging Spectroradiometer (MODIS) on-board NASA's TERRA and AQUA; and (ii) 3 GEO sensors - the Spinning Enhanced Visible and Infrared Imager (SEVIRI) on-board EUMETSAT's Meteosat Second Generation (MSG), the Japanese Meteorological Imager (JAMI) on-board the Japanese Meteorological Association (JMA) Multifunction Transport SATellite (MTSAT-2), and NASA's Geostationary Operational Environmental Satellites (GOES). The merged LST product is generated in two steps: 1) calibration between each LEO and each GEO that consists in the removal of systematic differences (associated to sensor type and LST algorithms, including calibration, atmospheric and surface emissivity corrections, amongst others) represented by linear regressions; 2) angular correction that consists in bringing all LST data to reference (nadir) view. Angular effects on LST are estimated by means of a kernel model of the surface thermal emission, which describes the angular dependence of LST as function of viewing and illumination geometry. The model is adjusted to MODIS and SEVIRI/MSG LST estimates and validated against LST retrievals from those sensors obtained for other years (not used in the calibration). It is shown that the model leads to a reduction of LST

  12. Determination of degradation products and pathways of mancozeb and ethylenethiourea (ETU) in solutions due to ozone and chlorine dioxide treatments.

    PubMed

    Hwang, Eun-Sun; Cash, Jerry N; Zabik, Matthew J

    2003-02-26

    The objective of the present study was to determine the degradation products of mancozeb and ethylenethiourea (ETU) and elucidate the possible degradation pathways in solution as a result of chemical oxidation using ozone and chlorine dioxide. This study was developed in a solution at 100 ppm of mancozeb and ETU concentration over the course of 60 min. Two different oxidizing agents used in this study were (1) ozone at 3 ppm and (2) chlorine dioxide at 20 ppm. Ozone was continuously provided throughout the course of the reaction. Degradation products were detected with high-resolution GC-MS. The total analysis time was 4 min per sample combined with rapid GC separation and time-of-flight mass spectrometry (TOFMS). Hydrolysis of mancozeb led to m/z 144 ion fragmentation, which is 5-imidazoledithiocarboxylic acid, as a major degradation product. ETU showed M(+) 102, which corresponds to its mass, indicating this compound was stable in distilled water and did not undergo hydrolysis during 60 min. The average retention times of mancozeb and ETU were approximately 181-189 and 210-230 s, respectively. Ozonation of mancozeb produced ETU as a major product. Treatment of ETU with ozone produced several degradation compounds. From prolonged ozonation, the CS(2) or CS group was removed. Overall, several byproducts identified were M(+) 60, M(+) 84, M(+) 163, M(+) 117, and M(+) 267 by ozone and M(+) 117, M(+) 86, and M(+) 163 by chlorine dioxide treatment. Several of these have been reported, but others have never been reported previously.

  13. Monitoring the Perturbation of Soil and Groundwater Microbial Communities Due to Pig Production Activities

    PubMed Central

    Hong, Pei-Ying; Yannarell, Anthony C.; Dai, Qinghua; Ekizoglu, Melike

    2013-01-01

    This study aimed to determine if biotic contaminants originating from pig production farms are disseminated into soil and groundwater microbial communities. A spatial and temporal sampling of soil and groundwater in proximity to pig production farms was conducted, and quantitative PCR (Q-PCR) was utilized to determine the abundances of tetracycline resistance genes (i.e., tetQ and tetZ) and integrase genes (i.e., intI1 and intI2). We observed that the abundances of tetZ, tetQ, intI1, and intI2 in the soils increased at least 6-fold after manure application, and their abundances remained elevated above the background for up to 16 months. Q-PCR further determined total abundances of up to 5.88 × 109 copies/ng DNA for tetZ, tetQ, intI1, and intI2 in some of the groundwater wells that were situated next to the manure lagoon and in the facility well used to supply water for one of the farms. We further utilized 16S rRNA-based pyrosequencing to assess the microbial communities, and our comparative analyses suggest that most of the soil samples collected before and after manure application did not change significantly, sharing a high Bray-Curtis similarity of 78.5%. In contrast, an increase in Bacteroidetes and sulfur-oxidizing bacterial populations was observed in the groundwaters collected from lagoon-associated groundwater wells. Genera associated with opportunistic human and animal pathogens, such as Acinetobacter, Arcobacter, Yersinia, and Coxiella, were detected in some of the manure-treated soils and affected groundwater wells. Feces-associated bacteria such as Streptococcus, Erysipelothrix, and Bacteroides were detected in the manure, soil, and groundwater ecosystems, suggesting a perturbation of the soil and groundwater environments by invader species from pig production activities. PMID:23396341

  14. Modelling of labour productivity loss due to climate change: HEAT-SHIELD

    NASA Astrophysics Data System (ADS)

    Kjellstrom, Tord; Daanen, Hein

    2016-04-01

    Climate change will bring higher heat levels (temperature and humidity combined) to large parts of the world. When these levels reach above thresholds well defined by human physiology, the ability to maintain physical activity levels decrease and labour productivity is reduced. This impact is of particular importance in work situations in areas with long high intensity hot seasons, but also affects cooler areas during heat waves. Our modelling of labour productivity loss includes climate model data of the Inter-Sectoral Impact Model Inter-comparison Project (ISI-MIP), calculations of heat stress indexes during different months, estimations of work capacity loss and its annual impacts in different parts of the world. Different climate models will be compared for the Representative Concentration Pathways (RCPs) and the outcomes of the 2015 Paris Climate Conference (COP21) agreements. The validation includes comparisons of modelling outputs with actual field studies using historical heat data. These modelling approaches are a first stage contribution to the European Commission funded HEAT-SHIELD project.

  15. Enhanced Southern Ocean marine productivity due to fertilization by giant icebergs

    NASA Astrophysics Data System (ADS)

    Duprat, Luis P. A. M.; Bigg, Grant R.; Wilton, David J.

    2016-03-01

    Primary productivity is enhanced within a few kilometres of icebergs in the Weddell Sea owing to the input of terrigeneous nutrients and trace elements during iceberg melting. However, the influence of giant icebergs, over 18 km in length, on marine primary production in the Southern Ocean is less well studied. Here we present an analysis of 175 satellite images of open ocean colour before and after the passage of 17 giant icebergs between 2003 and 2013. We detect substantially enhanced chlorophyll levels, typically over a radius of at least 4-10 times the iceberg's length, that can persist for more than a month following passage of a giant iceberg. This area of influence is more than an order of magnitude larger than that found for sub-kilometre scale icebergs or in ship-based surveys of giant icebergs. Assuming that carbon export increases by a factor of 5-10 over the area of influence, we estimate that up to a fifth of the Southern Ocean's downward carbon flux originates with giant iceberg fertilization. We suggest that, if giant iceberg calving increases this century as expected, this negative feedback on the carbon cycle may become more important.

  16. Ionic liquid effects on a multistep process. Increased product formation due to enhancement of all steps.

    PubMed

    Keaveney, Sinead T; Haines, Ronald S; Harper, Jason B

    2015-09-07

    The reaction of a series of substituted benzaldehydes with hexylamine was examined in acetonitrile and an ionic liquid. In acetonitrile, as the electron withdrawing nature of the substituent increases, the overall addition-elimination process becomes faster as does the build-up of the aminol intermediate. Under equivalent conditions in an ionic liquid, less intermediate build up is observed, and the effect on the rate on varying the substituent is different to that in acetonitrile. Extensive kinetic analysis shows that the ionic liquid solvent increases the rate constant of all steps of the reaction, resulting in faster product formation relative to acetonitrile; these effects increase with the proportion of ionic liquid in the reaction mixture. Differences in the equilibrium position of the addition step in the ionic liquid were found to account for both the decrease in intermediate build up relative to acetonitrile, as well as the differing trend in the overall rate of product formation as the substituent was changed. The microscopic origins of these ionic liquid effects were probed through temperature dependent analyses, highlighting the subtle balance of interactions between the ionic liquid and species along the reaction coordinate, particularly the importance of charge development in the transition state.

  17. Occupational radiation exposure due to norm in a rare-earth compounds production facility.

    PubMed

    Haridasan, P P; Pillai, P M B; Tripathi, R M; Puranik, V D

    2008-01-01

    In India, rare-earth compounds are produced from the beach sand mineral monazite. Caustic digestion of the mineral followed by selective acid extraction is the method used to separate composite rare-earth fraction. The composite rare-earth chloride contains low levels of natural radionuclides and is the starting material for individual rare-earth compounds which have wide applications. Activity concentrations in composite rare-earth compounds such as chlorides, fluorides, carbonates and oxides of Ce, Nd, Pr, Sm, Gd, etc. are presented in this paper. The external gamma exposure rates and airborne activity due to thorium and thoron progeny in the occupational environment are studied. The activity levels in liquid effluent are presented. The potential individual occupational dose is estimated to be 1.9 mSv per annum.

  18. Atmospheric odd oxygen production due to the photodissociation of ordinary and isotopic molecular oxygen

    NASA Technical Reports Server (NTRS)

    Omidvar, K.; Frederick, J. E.

    1987-01-01

    Line-by-line calculations are performed to determine the contributions of the Schumann-Runge bands of ordinary and isotopic oxygen to the photodissociation of these molecules at different altitudes. The contributions to the dissociation rates of the satellite lines and of the first and higher vibrational states of the initial molecular states are found to be insignificant. At 70 km, (O-16)(O-18) is found to produce 10 times as much odd oxygen as would be produced if the isotope did not have selective absorption, and 6 percent of the odd oxygen produced is due to this isotope. It is noted that the excess odd oxygen produced is not enough to explain the excess quantity of ozone observed in the atmosphere, which cannot be accounted for in photochemical models. Comparison with previous results is made.

  19. Heat and moisture diffusion in slab products due to convective boundary condition

    NASA Astrophysics Data System (ADS)

    Yilbas, B. S.; Hussain, M. M.; Dincer, I.

    2002-08-01

    In the present study, a closed form solution for the temperature distributions inside the solid substrate due to convective boundary condition at the surface is presented, particularly for drying applications. The analytical solution for the diffusion equation is introduced with constant concentration at the surface case. Temperature and moisture distributions inside apple slab are computed in this regard. It is found that temperature rises rapidly in the surface region of the substrate material during the early heating period and as the heating period progresses, temperature gradient attains almost steady value with advancing time. Moisture content variation in the surface region is considerably high in the early period and as time progresses, the rate of change of concentration in the substrate reduces. The present model is verified with actual data for heat conduction and moisture diffusion and a considerably high agreement is found.

  20. Production of a fragment of glycoprotein G of herpes simplex virus type 2 and evaluation of its diagnostic potential

    PubMed Central

    Liu, Tao; Liu, Ji Feng; Yu, Hua; Si, Guo Jing; Hu, Jun; Li, Jun

    2015-01-01

    INTRODUCTION Herpes simplex virus type 2 (HSV-2) is the most common cause of genital herpes. Glycoprotein G (gG) is a prototype antigen for type-specific serodiagnosis distinguishing between HSV type 1 (HSV-1) and HSV-2 infections. As immunological diagnosis kits for accurate differentiation between HSV-1 and HSV-2 antibodies can be expensive, there is a need to develop a convenient, sensitive, specific and cost-effective serodiagnostic kit. METHODS We successfully expressed a fragment of gG comprising residues 321–580 of HSV-2 with histidine tag (gG321–580His) in a Bac-to-Bac baculovirus expression system, which had an antigenicity similar to its native counterpart. An indirect enzyme-linked immunosorbent assay (ELISA) was developed using gG321–580His as the diagnostic antigen and evaluated by comparison with a commercial HerpeSelect 2 ELISA immunoglobulin G kit as reference. RESULTS In testing 318 field serum samples, the diagnostic relative sensitivity and specificity of the developed gG321–580His-ELISA test in qualitative comparison with the commercial kit were 93.81% and 96.74%, respectively, and the accuracy was 94.65%. CONCLUSION The study indicates that gG321–580His has a high diagnostic potential for HSV-2 virus serodiagnosis in humans. PMID:25532518

  1. Entanglement production due to quench dynamics of an anisotropic XY chain in a transverse field

    NASA Astrophysics Data System (ADS)

    Sengupta, K.; Sen, Diptiman

    2009-09-01

    We compute concurrence and negativity as measures of two-spin entanglement generated by a power-law quench (characterized by a rate τ-1 and an exponent α ) which takes an anisotropic XY chain in a transverse field through a quantum critical point (QCP). We show that only spins separated by an even number of lattice spacings get entangled in such a process. Moreover, there is a critical rate of quench, τc-1 , above which no two-spin entanglement is generated; the entire entanglement is multipartite. The ratio of the entanglements between consecutive even neighbors can be tuned by changing the quench rate. We also show that for large τ , the concurrence (negativity) scales as α/τ (α/τ) , and we relate this scaling behavior to defect production by the quench through a QCP.

  2. Detection of Salmonella spp. Isolates from specimens due to pork production Chains in Hue City, Vietnam.

    PubMed

    Takeshi, Koichi; Itoh, Shigeru; Hosono, Hiromi; Kono, Hiroichi; Tin, Vo Trung; Vinh, Nguyen Quang; Thuy, Nguyen Thi Bich; Kawamoto, Keiko; Makino, Sou-Ichi

    2009-04-01

    From August 2007 until March 2008, we perfomed a detection and epidemiological analysis for Salmonella spp. in specimens collected from pork production chains to improve the quality of meat hygiene conditions in Hue, Vietnam. A total of 306 specimens were examined for Salmonella spp., aerobic bacterial counts and coliform. Seven serovars of Salmonella spp. were detected in retail pork, slaughterhouse carcasses and environmental specimens with the following detection rates: 32.8% of retail pork, 15.5% of slaughterhouse carcasses, 47.4% of floors, 38.1% of weighing bowls, 28.6% of cooking boards and 16.7% of tank water samples. Based on these results, we recommend that exhaustive sterilization, washing, routine bacteriological examinations and treatments at low temperature are performed in slaughterhouses, transportation facilities and retail stores.

  3. Gas production due to alpha particle degradation of polyethylene and polyvinylchloride

    SciTech Connect

    Reed, D.T.; Hoh, J.; Emery, J.; Okajima, S.; Krause, T.

    1998-07-01

    Alpha particle degradation experiments were performed on polyethylene (PE) and polyvinylchloride (PVC) plastic samples typical of Westinghouse Savannah River Company (WSRC) transuranic (TRU) waste. This was done to evaluate the effects of sealing TRU waste during shipment. Experiments were conducted at three temperatures using low dose rates. Predominant products from both plastics were hydrogen, carbon dioxide, and various organic species, with the addition of hydrochloric acid from PVC. In all experiments, the total pressure decreased. Irradiation at 30 and 60 C and at various dose rates caused small changes for both plastics, but at 100 C coupled thermal-radiolytic effects included discoloration of the material as well as large differences in the gas phase composition.

  4. Teachers and Teaching: Speech Production Accommodations Due to Changes in the Acoustic Environment

    PubMed Central

    Hunter, Eric J.; Bottalico, Pasquale; Graetzer, Simone; Leishman, Timothy W.; Berardi, Mark L.; Eyring, Nathan G.; Jensen, Zachary R.; Rolins, Michael K.; Whiting, Jennifer K.

    2016-01-01

    School teachers have an elevated risk of voice problems due to the vocal demands in the workplace. This manuscript presents the results of three studies investigating teachers’ voice use at work. In the first study, 57 teachers were observed for 2 weeks (waking hours) to compare how they used their voice in the school environment and in non-school environments. In a second study, 45 participants performed a short vocal task in two different rooms: a variable acoustic room and an anechoic chamber. Subjects were taken back and forth between the two rooms. Each time they entered the variable acoustics room, the reverberation time and/or the background noise condition had been modified. In this latter study, subjects responded to questions about their vocal comfort and their perception of changes in the acoustic environment. In a third study, 20 untrained vocalists performed a simple vocal task in the following conditions: with and without background babble and with and without transparent plexiglass shields to increase the first reflection. Relationships were examined between [1] the results for the room acoustic parameters; [2] the subjects’ perception of the room; and [3] the recorded speech acoustic. Several differences between male and female subjects were found; some of those differences held for each room condition (at school vs. not at school, reverberation level, noise level, and early reflection). PMID:26949426

  5. Production of a soluble single-chain variable fragment antibody against okadaic acid and exploration of its specific binding.

    PubMed

    He, Kuo; Zhang, Xiuyuan; Wang, Lixia; Du, Xinjun; Wei, Dong

    2016-06-15

    Okadaic acid is a lipophilic marine algal toxin commonly responsible for diarrhetic shellfish poisoning (DSP). Outbreaks of DSP have been increasing and are of worldwide public health concern; therefore, there is a growing demand for more rapid, reliable, and economical analytical methods for the detection of this toxin. In this study, anti-okadaic acid single-chain variable fragment (scFv) genes were prepared by cloning heavy and light chain genes from hybridoma cells, followed by fusion of the chains via a linker peptide. An scFv-pLIP6/GN recombinant plasmid was constructed and transformed into Escherichia coli for expression, and the target scFv was identified with IC-CLEIA (chemiluminescent enzyme immunoassay). The IC15 was 0.012 ± 0.02 μg/L, and the IC50 was 0.25 ± 0.03 μg/L. The three-dimensional structure of the scFv was simulated with computer modeling, and okadaic acid was docked to the scFv model to obtain a putative structure of the binding complex. Two predicted critical amino acids, Ser32 and Thr187, were then mutated to verify this theoretical model. Both mutants exhibited significant loss of binding activity. These results help us to understand this specific scFv-antigen binding mechanism and provide guidance for affinity maturation of the antibody in vitro. The high-affinity scFv developed here also has potential for okadaic acid toxin detection.

  6. Workshop on induced Seismicity due to fluid injection/production from Energy-Related Applications

    SciTech Connect

    Majer, E.L.; Asanuma, Hiroshi; Rueter, Horst; Stump, Brian; Segall, Paul; Zoback, Mark; Nelson, Jim; Frohlich, Cliff; Rutledge, Jim; Gritto, Roland; Baria, Roy; Hickman, Steve; McGarr, Art; Ellsworth, Bill; Lockner, Dave; Oppenheimer, David; Henning, Peter; Rosca, Anca; Hornby, Brian; Wang, Herb; Beeler, Nick; Ghassemi, Ahmad; Walters, Mark; Robertson-Tait, Ann; Dracos, Peter; Fehler, Mike; Abou-Sayed, Ahmed; Ake, Jon; Vorobiev, Oleg; Julian, Bruce

    2011-04-01

    that was necessary not only to make fluid injections safe, but an economic asset, DOE organized a series of workshops. The first workshop was held on February 4, 2010, at Stanford University. A second workshop will be held in mid-2010 to address the critical elements of a 'best practices/protocol' that industry could use as a guide to move forward with safe implementation of fluid injections/production for energy-related applications, i.e., a risk mitigation plan, and specific recommendations for industry to follow. The objectives of the first workshop were to identify critical technology and research needs/approaches to advance the understanding of induced seismicity associated with energy related fluid injection/production, such that: (1) The risk associated with induced seismicity can be reduced to a level that is acceptable to the public, policy makers, and regulators; and (2) Seismicity can be utilized/controlled to monitor, manage, and optimize the desired fluid behavior in a cost effective fashion. There were two primary goals during the workshop: (1) Identify the critical roadblocks preventing the necessary understanding of human-induced seismicity. These roadblocks could be technology related (better imaging of faults and fractures, more accurate fluid tracking, improved stress measurements, etc.), research related (fundamental understanding of rock physical properties and geochemical fluid/rock interactions, development of improved constitutive relations, improved understanding of rock failure, improved data processing and modeling, etc.), or a combination of both. (2) After laying out the roadblocks the second goal was to identify technology development and research needs that could be implemented in the near future to address the above objectives.

  7. Modeling Hydrodynamic Changes Due to Marine Hydrokinetic Power Production: Community Outreach and Education

    NASA Astrophysics Data System (ADS)

    James, S. C.; Jones, C.; Roberts, J.

    2013-12-01

    Power generation with marine hydrokinetic (MHK) turbines is receiving growing global interest. Because of reasonable investment, maintenance, reliability, and environmental friendliness, this technology can contribute to national (and global) energy markets and is worthy of research investment. Furthermore, in remote areas, small-scale MHK energy from river, tidal, or ocean currents can provide a local power supply. The power-generating capacity of MHK turbines will depend, among other factors, upon the turbine type and number and the local flow velocities. There is an urgent need for deployment of practical, accessible tools and techniques to help the industry optimize MHK array layouts while establishing best sitting and design practices that minimize environmental impacts. Sandia National Laboratories (SNL) has modified the open-source flow and transport Environmental Fluid Dynamics Code (EFDC) to include the capability of simulating the effects of MHK power production. Upon removing energy (momentum) from the system, changes to the local and far-field flow dynamics can be estimated (e.g., flow speeds, tidal ranges, flushing rates, etc.). The effects of these changes on sediment dynamics and water quality can also be simulated using this model. Moreover, the model can be used to optimize MHK array layout to maximize power capture and minimize environmental impacts. Both a self-paced tutorial and in-depth training course have been developed as part of an outreach program to train academics, technology developers, and regulators in the use and application of this software. This work outlines SNL's outreach efforts using this modeling framework as applied to two specific sites where MHK turbines have been deployed.

  8. Enhanced Ozone Production at Low Temperatures due to Ethanol (E85)

    NASA Astrophysics Data System (ADS)

    Ginnebaugh, D. L.; Livingstone, P. L.; Jacobson, M. Z.

    2009-12-01

    The increased use of ethanol in transportation fuels warrants an investigation of its consequences. An important component of such an investigation is the temperature-dependence of ethanol and gasoline exhaust chemistry. We use the near-explicit Master Chemical Mechanism (MCM, version 3.1, LEEDS University) with the SMVGEAR II chemical ordinary differential solver to provide the speed necessary to simulate explicit chemistry to examine such effects. The MCM has over 13,500 organic reactions and 4,600 species. SMVGEAR II is a sparse-matrix Gear solver that reduces the computation time significantly while maintaining any specified accuracy. Although for this study we use a box model, we determined that the speed of the MCM with the SMVGEAR solver will allow the MCM to be modeled in 3-dimensions. We also verified the accuracy of the model with comparisons to smog chamber data. We use species-resolved tailpipe emissions data for E85 (15% gasoline, 85% ethanol fuel blend) and gasoline vehicles to compare the impact of each on ozone and carcinogenic organic gases as a function of ambient temperature and background concentrations, using Los Angeles in 2020 as a base case. We use two different emissions sets - one is a compilation of data taken at near 24 C and the other from data taken at -7 C - to determine how atmospheric chemistry and emissions are affected by temperature. We include diurnal effects by examining 2 day and 5 day scenarios. We find that for both emission data sets, the average ozone concentrations through the range of temperatures tested are higher with E85 than with gasoline by 8 parts per billion volume (ppbv) at higher temperatures to 55 ppbv at low temperatures and low sunlight (winter conditions) for an area with a high nitrogen oxides (NOx) to non-methane organic gases (NMOG) ratio. The results suggest that E85's effect on health through ozone formation becomes increasingly more significant relative to gasoline as temperatures decreased due to the

  9. Plumes, orogenesis, and supercontinental fragmentation

    NASA Astrophysics Data System (ADS)

    Dalziel, I. W. D.; Lawver, L. A.; Murphy, J. B.

    2000-05-01

    A time-space relationship between large igneous provinces (LIPS), present day hot spots, and the fragmentation of Pangea has been documented over several decades, but the cause of fragmentation has remained elusive. LIPS are regarded either as the result of impingement of a mantle plume on the base of the lithosphere, or as the initial products of adiabatic decompression melting of anomalously hot mantle. Do LIPS therefore constitute evidence of an active role for plumes from the deep mantle in supercontinental fragmentation, or are they merely the first indications of a large-scale but near-surface tectonic process? Two long recognized and enigmatic orogenic events may offer a solution to this geologically important 'chicken or egg' conundrum. The reconstructed early Mesozoic Gondwanide fold belt of South America, southern Africa, and Antarctica, could have resulted from 'plume-modified orogeny', flattening of a downgoing lithospheric slab due to the buoyancy of a plume rising beneath a continental margin subduction zone. If so, the ˜180 Ma Karroo and Ferrar LIPS associated with the opening of the ocean basin between East and West Gondwanaland at ˜165 Ma resulted from impingement of this plume and are unrelated to the thermal insulation of the shallow mantle beneath Gondwanaland. It would then follow that the plume itself played an active, possibly critical, role in the initial breakup of the supercontinent. The Late Paleozoic 'Ancestral Rockies' deformation in the southwestern United States could be yet another example of orogeny driven by a plume that initiated the break-up of Pangea approximately 15 Myr earlier in the Central Atlantic region.

  10. Identification of Salmonella serotypes isolated from cantaloupe and chile pepper production systems in Mexico by PCR-restriction fragment length polymorphism.

    PubMed

    Gallegos-Robles, Miguel A; Morales-Loredo, Alberto; Alvarez-Ojeda, Genoveva; Vega-P, Adrián; Chew-M, Yazmín; Velarde, Sixto; Fratamico, Pina

    2008-11-01

    A study was conducted in 2006 to determine the prevalence of Salmonella on three cantaloupe farms in Matamoros, Coahuila, Mexico, and on one farm that cultivates chile peppers var. Bell in Culiacán, Sinaloa, Mexico. Samples from cantaloupe farms consisted of cantaloupe rinses, irrigation water, water from furrows in the field, and workers' hands. Samples from the chile pepper farm consisted of rinses of chile peppers obtained at the field, pepper rinses obtained at the packing house, and irrigation water from the field. A total of 55 samples were obtained from both production systems. Twelve and 10 samples from the cantaloupe and chile pepper production systems, respectively, tested positive for Salmonella according to a traditional culture method. The difference between the proportion of Salmonella-positive samples from the cantaloupe production system (12 of 28 = 0.43) and the chile pepper production system (10 of 27 = 0.37) was not statistically significant (P > 0.05). A PCR-restriction fragment length polymorphism (RFLP) method based on the fliC gene was used to determine the serotype of the isolates. Salmonella Typhimurium was the only serotype found associated with the cantaloupe production system, whereas both Salmonella Typhimurium and Enteritidis serotypes were found associated with the chile pepper production system. Results showed that 91% (20 of 22) and 9% (2 of 22) of the isolates from both agricultural systems matched with the Salmonella Typhimurium and Salmonella Enteritidis reference strain restriction profiles, respectively. This study demonstrates the utility of the PCR-RFLP technique for determining the serotypes of Salmonella isolates obtained from cantaloupe and chile pepper production systems.

  11. The significance of nitrous oxide emission due to cropping of grain for biofuel production: a Swedish perspective

    NASA Astrophysics Data System (ADS)

    Kasimir Klemedtsson, Å.; Smith, K. A.

    2011-12-01

    The current regulations governing production of biofuels in the European Union require that they have to mitigate climate change, by producing >35% less greenhouse gases (GHG) than fossil fuels. There is a risk that this may not be achievable, since land use for crop production inevitably emits the potent GHG nitrous oxide (N2O), due to nitrogen fertilisation and cycling in the environment. We analyse first-generation biofuel production on agricultural land and conclude that efficient agricultural crop production resulting in a good harvest and low N2O emission can fulfil the EU standard, and is possible under certain conditions for the Swedish agricultural and bioethanol production systems. However, in years having low crop yields, and where cropping is on organic soils, total GHG emissions per unit of fuel produced can be even higher than those released by burning of fossil fuels. In general, the N2O emission size in Sweden and elsewhere in northern Europe is such that there is a >50% chance that the 35% saving requirement will not be met. Thus ecosystem N2O emissions have to be convincingly assessed. Here we compare Swedish emission data with values estimated by means of statistical models and by a global, top-down, approach; the measurements and the predictions often show higher values that would fail to meet the EU standard and thus prevent biofuel production development.

  12. Fragmentation functions in nuclear media

    NASA Astrophysics Data System (ADS)

    Sassot, Rodolfo; Stratmann, Marco; Zurita, Pia

    2010-03-01

    We perform a detailed phenomenological analysis of how well hadronization in nuclear environments can be described in terms of effective fragmentation functions. The medium modified fragmentation functions are assumed to factorize from the partonic scattering cross sections and evolve in the hard scale in the same way as the standard or vacuum fragmentation functions. Based on precise data on semi-inclusive deep-inelastic scattering off nuclei and hadron production in deuteron-gold collisions, we extract sets of effective fragmentation functions for pions and kaons at next-to-leading order accuracy. The obtained sets provide a rather accurate description of the kinematical dependence of the analyzed cross sections and are found to differ significantly from standard fragmentation functions both in shape and magnitude. Our results support the notion of factorization and universality in the studied nuclear environments, at least in an effective way and within the precision of the available data.

  13. Reduction of DNA fragmentation and hydroxyl radical production by hyaluronic acid and chondroitin-4-sulphate in iron plus ascorbate-induced oxidative stress in fibroblast cultures.

    PubMed

    Campo, Giuseppe M; Avenoso, Angela; Campo, Salvatore; D'Ascola, Angela; Ferlazzo, Alida M; Calatroni, Alberto

    2004-06-01

    Glycosaminoglycans (GAGs), components of extracellular matrix, are thought to play important roles in cell proliferation and differentiation in the repair process of injured tissue. Oxidative stress is one of the most frequent causes of tissue and cell injury and the consequent lipid peroxidation is the main manifestation of free radical damage. It has been found to play an important role in the evolution of cell death. Since several reports have shown that hyaluronic acid (HYA) and chondroitin-4-sulphate (C4S) are able to inhibit lipid peroxidation during oxidative stress, We investigated the antioxidant capacity of these GAGs in reducing oxidative damage in fibroblast cultures. Free radicals production was induced by the oxidizing system employing iron (Fe2+) plus ascorbate. We evaluated cell death, membrane lipid peroxidation, DNA damage, protein oxidation, hydroxyl radical (OH*) generation and endogenous antioxidant depletion in human skin fibroblast cultures. The exposition of fibroblasts to FeSO4 and ascorbate caused inhibition of cell growth and cell death, increased OH* production determined by the aromatic trap method; furthermore it caused DNA strand breaks and protein oxidation as shown by the DNA fragments analysis and protein carbonyl content, respectively. Moreover, it enhanced lipid peroxidation evaluated by the analysis of conjugated dienes (CD) and decreased antioxidant defenses assayed by means of measurement of superoxide dismutase (SOD) and catalase (CAT) activities. When fibroblasts were treated with two different doses of HYA or C4S a protective effect, following oxidative stress induction, was shown. In fact these GAGs were able to limit cell death, reduced DNA fragmentation and protein oxidation, decreased OH* generation, inhibited lipid peroxidation and improved antioxidant defenses. Our results confirm the antioxidant activity of HYA and C4S and this could represent a useful step in the understanding of the exact role played by GAGs in

  14. Overexpression of ryanodine receptor type 1 enhances mitochondrial fragmentation and Ca2+-induced ATP production in cardiac H9c2 myoblasts.

    PubMed

    O-Uchi, Jin; Jhun, Bong Sook; Hurst, Stephen; Bisetto, Sara; Gross, Polina; Chen, Ming; Kettlewell, Sarah; Park, Jongsun; Oyamada, Hideto; Smith, Godfrey L; Murayama, Takashi; Sheu, Shey-Shing

    2013-12-01

    Ca(+) influx to mitochondria is an important trigger for both mitochondrial dynamics and ATP generation in various cell types, including cardiac cells. Mitochondrial Ca(2+) influx is mainly mediated by the mitochondrial Ca(2+) uniporter (MCU). Growing evidence also indicates that mitochondrial Ca(2+) influx mechanisms are regulated not solely by MCU but also by multiple channels/transporters. We have previously reported that skeletal muscle-type ryanodine receptor (RyR) type 1 (RyR1), which expressed at the mitochondrial inner membrane, serves as an additional Ca(2+) uptake pathway in cardiomyocytes. However, it is still unclear which mitochondrial Ca(2+) influx mechanism is the dominant regulator of mitochondrial morphology/dynamics and energetics in cardiomyocytes. To investigate the role of mitochondrial RyR1 in the regulation of mitochondrial morphology/function in cardiac cells, RyR1 was transiently or stably overexpressed in cardiac H9c2 myoblasts. We found that overexpressed RyR1 was partially localized in mitochondria as observed using both immunoblots of mitochondrial fractionation and confocal microscopy, whereas RyR2, the main RyR isoform in the cardiac sarcoplasmic reticulum, did not show any expression at mitochondria. Interestingly, overexpression of RyR1 but not MCU or RyR2 resulted in mitochondrial fragmentation. These fragmented mitochondria showed bigger and sustained mitochondrial Ca(2+) transients compared with basal tubular mitochondria. In addition, RyR1-overexpressing cells had a higher mitochondrial ATP concentration under basal conditions and showed more ATP production in response to cytosolic Ca(2+) elevation compared with nontransfected cells as observed by a matrix-targeted ATP biosensor. These results indicate that RyR1 possesses a mitochondrial targeting/retention signal and modulates mitochondrial morphology and Ca(2+)-induced ATP production in cardiac H9c2 myoblasts.

  15. Production of energetic light fragments in extensions of the CEM and LAQGSM event generators of the Monte Carlo transport code MCNP6

    NASA Astrophysics Data System (ADS)

    Mashnik, Stepan G.; Kerby, Leslie M.; Gudima, Konstantin K.; Sierk, Arnold J.; Bull, Jeffrey S.; James, Michael R.

    2017-03-01

    We extend the cascade-exciton model (CEM), and the Los Alamos version of the quark-gluon string model (LAQGSM), event generators of the Monte Carlo N -particle transport code version 6 (MCNP6), to describe production of energetic light fragments (LF) heavier than 4He from various nuclear reactions induced by particles and nuclei at energies up to about 1 TeV/nucleon. In these models, energetic LF can be produced via Fermi breakup, preequilibrium emission, and coalescence of cascade particles. Initially, we study several variations of the Fermi breakup model and choose the best option for these models. Then, we extend the modified exciton model (MEM) used by these codes to account for a possibility of multiple emission of up to 66 types of particles and LF (up to 28Mg) at the preequilibrium stage of reactions. Then, we expand the coalescence model to allow coalescence of LF from nucleons emitted at the intranuclear cascade stage of reactions and from lighter clusters, up to fragments with mass numbers A ≤7 , in the case of CEM, and A ≤12 , in the case of LAQGSM. Next, we modify MCNP6 to allow calculating and outputting spectra of LF and heavier products with arbitrary mass and charge numbers. The improved version of CEM is implemented into MCNP6. Finally, we test the improved versions of CEM, LAQGSM, and MCNP6 on a variety of measured nuclear reactions. The modified codes give an improved description of energetic LF from particle- and nucleus-induced reactions; showing a good agreement with a variety of available experimental data. They have an improved predictive power compared to the previous versions and can be used as reliable tools in simulating applications involving such types of reactions.

  16. Fragmentation of cosmic-string loops

    NASA Technical Reports Server (NTRS)

    York, Thomas

    1989-01-01

    The fragmentation of cosmic string loops is discussed, and the results of a simulation of this process are presented. The simulation can evolve any of a large class of loops essentially exactly, including allowing fragments that collide to join together. Such reconnection enhances the production of small fragments, but not drastically. With or without reconnections, the fragmentation process produces a collection of nonself-intersecting loops whose typical length is on the order of the persistence length of the initial loop.

  17. Measuring the societal burden of cancer: the cost of lost productivity due to premature cancer-related mortality in Europe.

    PubMed

    Hanly, Paul; Soerjomataram, Isabelle; Sharp, Linda

    2015-02-15

    Every cancer-related death in someone of working age represents an economic loss to society. To inform priorities for cancer control, we estimated costs of lost productivity due to premature cancer-related mortality across Europe, for all cancers and by site, gender, region and country. Cancer deaths in 2008 were obtained from GLOBOCAN for 30 European countries across four regions. Costs were valued using the human capital approach. Years of productive life lost (YPLL) were computed by multiplying deaths between 15 and 64 years by working-life expectancy, then by country-, age- and gender-specific annual wages, corrected for workforce participation and unemployment. Lost productivity costs due to premature cancer-related mortality in Europe in 2008 were €75 billion. Male costs (€49 billion) were almost twice female costs (€26 billion). The most costly sites were lung (€17 billion; 23% of total costs), breast (€7 billion; 9%) and colorectum (€6 billion; 8%). Stomach cancer (in Southern and Central-Eastern Europe) and pancreatic cancer (in Northern and Western Europe) were also among the most costly sites. The average lost productivity cost per cancer death was €219,241. Melanoma had the highest cost per death (€312,798), followed by Hodgkin disease (€306,628) and brain and CNS cancer (€288,850). Premature mortality costs were 0.58% of 2008 European gross domestic product, highest in Central-Eastern Europe (0.81%) and lowest in Northern Europe (0.51%). Premature cancer-related mortality costs in Europe are significant. These results provide a novel perspective on the societal cancer burden and may be used to inform priority setting for cancer control.

  18. QGP and Modified Jet Fragmentation

    SciTech Connect

    Wang, Xin-Nian

    2005-04-18

    Recent progresses in the study of jet modification in hotmedium and their consequences in high-energy heavy-ion collisions are reviewed. In particular, I will discuss energy loss for propagating heavy quarks and the resulting modified fragmentation function. Medium modification of the parton fragmentation function due to quark recombination are formulated within finite temperature field theory and their implication on the search for deconfined quark-gluon plasma is also discussed.

  19. Production and delivery batch scheduling with a common due date and multiple vehicles to minimize total cost

    NASA Astrophysics Data System (ADS)

    Prasetyaningsih, E.; Suprayogi; Samadhi, TMAA; Halim, AH

    2016-02-01

    This paper studies production and delivery batch scheduling problems for a single- supplier-to-a-single-manufacturer case, with multiple capacitated vehicles wherein different holding costs between in-process and completed parts are allowed. In the problem, the parts of a single item are first batched,then the resulting batches are processed on a single machine. All completed batches are transported in a number of deliveries in order to be received at a common due date. The objective is to find the integrated schedule of production and delivery batches so as to satisfy its due date and to minimize the total cost of associated in-process parts inventory, completed parts inventory and delivery. It should be noted that both holding costs constitute a derivation of the so-called actual flow time, and the delivery cost is proportional to the required number of deliveries. The problem can be formulated as an integer non-linier programming and it is solved optimally by Lingo 11.0 software. Numerical experiences show that there are two patterns of batch sizes affected by the ratio of holding costs of in-process and completed parts. It can be used by practitioners to solve the realistic integrated production and delivery batch scheduling problem.

  20. Authentication of whisky due to its botanical origin and way of production by instrumental analysis and multivariate classification methods

    NASA Astrophysics Data System (ADS)

    Wiśniewska, Paulina; Boqué, Ricard; Borràs, Eva; Busto, Olga; Wardencki, Waldemar; Namieśnik, Jacek; Dymerski, Tomasz

    2017-02-01

    Headspace mass-spectrometry (HS-MS), mid infrared (MIR) and UV-vis spectroscopy were used to authenticate whisky samples from different origins and ways of production ((Irish, Spanish, Bourbon, Tennessee Whisky and Scotch). The collected spectra were processed with partial least-squares discriminant analysis (PLS-DA) to build the classification models. In all cases the five groups of whiskies were distinguished, but the best results were obtained by HS-MS, which indicates that the biggest differences between different types of whisky are due to their aroma. Differences were also found inside groups, showing that not only raw material is important to discriminate samples but also the way of their production. The methodology is quick, easy and does not require sample preparation.

  1. Evaluation of the productivity decrease risk due to a future increase in tropical cyclone intensity in Japan.

    PubMed

    Esteban, Miguel; Longarte-Galnares, Gorka

    2010-12-01

    A number of scientists have recently conducted research that shows that tropical cyclone intensity is likely to increase in the future. This would result in an increase in the damage along with a decrease in economic productivity due to precautionary cessation of the economic activity of the affected areas during the passage of the cyclone. The economic effect of this stop in economic activity is a phenomenon that has not received much attention in the past, and the cumulative effect that it can have on the Japanese economy over the next 75 years has never been evaluated. The starting point for the evaluation of the economic risks is the change in the patterns of tropical cyclone intensity suggested by Knutson and Tuleya. The results obtained show how a significant decrease in the overall productivity of the country could be expected, which could lower GDP by between 6% and 13% by 2085.

  2. LC–MS/MS quantification of a neuropeptide fragment kisspeptin-10 (NSC 741805) and characterization of its decomposition product and pharmacokinetics in rats

    PubMed Central

    Liu, Zhongfa; Ren, Chen; Jones, William; Chen, Ping; Seminara, Stephanie B.; Chan, Yee-Ming; Smith, Nicola F.; Covey, Joseph M.; Wang, Jeffrey; Chan, Kenneth K.

    2014-01-01

    The kisspeptins are critical regulators of mammalian reproduction. Kisspeptin-10 (45YNWNSFGLRF-NH254, kisspeptin-112–121 or metastin 45–54, NSC 741805), an active fragment of kisspeptin, has been shown to be a potent stimulator of gonadotropin-releasing hormone and secretion of luteinizing hormone in both rodents and primates. This shorter peptide fragment may have clinical utility potential and it is important to characterize its pharmacokinetic property. Recently, the pharmacokinetics of both kisspeptin-54 and kisspeptin-10 were characterized in humans using a radioimmunoassay (RIA), which measures only the immunoreactive kisspeptin (kisspeptin-IR). In this study, a highly sensitive and specific LC–MS/MS assay was developed to quantify kisspeptin-10 levels in rat plasma. The lower limit of quantitation (LLOQ) was 0.5 ng/mL, the within-day and between-day coefficient of variations (CVs) ranged from 5.2 to 15.4% and 1.3 to 14.2%, and the accuracy values ranged from 98 to 114% and 99 to 105%, respectively. With this method, stability studies demonstrated that kisspeptin-10 degraded rapidly with decomposition half-lives of 6.8 min, 2.9 min and 1.7 min at 4 °C, 25 °C, and 37 °C, respectively. The principal decomposition product was characterized as the N-terminal tyrosine deleted kisspeptin-10 46NWDSFGLRF-NH254. Pharmacokinetic study in rats showed that low ng/mL kisspeptin-10 was detected in the first few minutes, and eliminated rapidly and became undetectable 30 min after intravenous (i.v.) bolus administration of 1.0 mg/kg kisspeptin-10. PMID:23524040

  3. Decreasing net primary production due to drought and slight decreases in solar radiation in China from 2000 to 2012

    NASA Astrophysics Data System (ADS)

    Wang, J.; Dong, J.; Yi, Y.; Lu, G.; Oyler, J.; Smith, W. K.; Zhao, M.; Liu, J.; Running, S.

    2017-01-01

    Terrestrial ecosystems have continued to provide the critical service of slowing the atmospheric CO2 growth rate. Terrestrial net primary productivity (NPP) is thought to be a major contributing factor to this trend. Yet our ability to estimate NPP at the regional scale remains limited due to large uncertainties in the response of NPP to multiple interacting climate factors and uncertainties in the driver data sets needed to estimate NPP. In this study, we introduced an improved NPP algorithm that used local driver data sets and parameters in China. We found that bias decreased by 30% for gross primary production (GPP) and 17% for NPP compared with the widely used global GPP and NPP products, respectively. From 2000 to 2012, a pixel-level analysis of our improved NPP for the region of China showed an overall decreasing NPP trend of 4.65 Tg C a-1. Reductions in NPP were largest for the southern forests of China (-5.38 Tg C a-1), whereas minor increases in NPP were found for North China (0.65 Tg C a-1). Surprisingly, reductions in NPP were largely due to decreases in solar radiation (82%), rather than the more commonly expected effects of drought (18%). This was because for southern China, the interannual variability of NPP was more sensitive to solar radiation (R2 in 0.29-0.59) relative to precipitation (R2 < 0.13). These findings update our previous knowledge of carbon uptake responses to climate change in terrestrial ecosystems of China and highlight the importance of shortwave radiation in driving vegetation productivity for the region, especially for tropical forests.

  4. Variations of net ecosystem production due to seasonal precipitation differences in a tropical dry forest of northwest Mexico

    NASA Astrophysics Data System (ADS)

    Verduzco, Vivian S.; Garatuza-Payán, Jaime; Yépez, Enrico A.; Watts, Christopher J.; Rodríguez, Julio C.; Robles-Morua, Agustin; Vivoni, Enrique R.

    2015-10-01

    Due to their large extent and high primary productivity, tropical dry forests (TDF) are important contributors to atmospheric carbon exchanges in subtropical and tropical regions. In northwest Mexico, a bimodal precipitation regime that includes winter precipitation derived from Pacific storms and summer precipitation from the North American monsoon (NAM) couples water availability with ecosystem processes. We investigated the net ecosystem production of a TDF ecosystem using a 4.5 year record of water and carbon fluxes obtained from the eddy covariance method complemented with remotely sensed data. We identified a large CO2 efflux at the start of the summer season that is strongly related to the preceding winter precipitation and greenness. Since this CO2 efflux occurs prior to vegetation green-up, we infer that respiration is mainly due to decomposition of soil organic matter accumulated from the prior growing season. Overall, ecosystem respiration has an important effect on the net ecosystem production but can be overwhelmed by the strength of the primary productivity during the NAM. Precipitation characteristics during NAM have significant controls on sustaining carbon fixation in the TDF into the fall season. We identified that a threshold of ~350 to 400 mm of monsoon precipitation leads to a switch in the annual carbon balance in the TDF ecosystem from a net source (+102 g C/m2/yr) to a net sink (-249 g C/m2/yr). This monsoonal precipitation threshold is typically exceeded one out of every 2 years. The close coupling of winter and summer periods with respect to carbon fluxes suggests that the annual carbon balance is dependent on precipitation amounts in both seasons in TDF ecosystems.

  5. Development of production and purification processes of recombinant fragment of pneumococcal surface protein A in Escherichia coli using different carbon sources and chromatography sequences.

    PubMed

    Carvalho, Rimenys Junior; Cabrera-Crespo, Joaquin; Tanizaki, Martha Massako; Gonçalves, Viviane Maimoni

    2012-05-01

    Pneumococcal surface protein A (PspA) is essential for Streptococcus pneumoniae virulence and its use either as a novel pneumococcal vaccine or as carrier in a conjugate vaccine would improve the protection and the coverage of the vaccine. Within this context, the development of scalable production and purification processes of His-tagged recombinant fragment of PspA from clade 3 (rfPspA3) in Escherichia coli BL21(DE3) was proposed. Fed-batch production was performed using chemically defined medium with glucose or glycerol as carbon source. Although the use of glycerol led to lower acetate production, the concentration of cells were similar at the end of both fed-batches, reaching high cell density of E. coli (62 g dry cell weight/L), and the rfPspA3 production was higher with glucose (3.48 g/L) than with glycerol (2.97 g/L). A study of downstream process was also carried out, including cell disruption and clarification steps. Normally, the first chromatography step for purification of His-tagged proteins is metal affinity. However, the purification design using anion exchange followed by metal affinity gave better results for rfPspA3 than the opposite sequence. Performing this new design of chromatography steps, rfPspA3 was obtained with 95.5% and 75.9% purity, respectively, from glucose and glycerol culture. Finally, after cation exchange chromatography, rfPspA3 purity reached 96.5% and 90.6%, respectively, from glucose and glycerol culture, and the protein was shown to have the expected alpha-helix secondary structure.

  6. Enhanced production of functional extracellular single chain variable fragment against HIV-1 matrix protein from Escherichia coli by sequential simplex optimization.

    PubMed

    Intachai, Kannaporn; Singboottra, Panthong; Leksawasdi, Noppol; Kasinrerk, Watchara; Tayapiwatana, Chatchai; Butr-Indr, Bordin

    2015-01-01

    The optimal culture condition for extracellular recombinant single chain variable fragment anti HIV-1 p17 protein (scFv anti-p17) production in Escherichia coli HB2151 was investigated by the sequential simplex optimization (SS) method. Five variable parameters were submitted in the fermentation process. The most favorable condition obtained from 19 independent experiments was as followed: 58 µM of IPTG induction to 1.7 OD600 nm at 25.5°C for 16 h with 202 rpm agitation rate. The amount of secreted scFv anti-p17 at the optimal condition was 38% higher than under the control condition. The binding activity of soluble extracellular scFv anti-p17 protein increased 95.5% and 73.2% in comparison with the control condition and non-optimized condition respectively. The soluble scFv anti-p17 from crude HB2151 lysated was subsequently purified by immobilized metal ion affinity chromatography (IMAC) with His-tag. The purified scFv anti-p17 was intact and retained its antigen-binding affinity against HIV-1 p17. We demonstrated that the sequential simplex optimization method was a key for exertion of high yield with fewer experimental requirements for acquiring of large scale secretory protein production.

  7. Driven fragmentation of granular gases.

    PubMed

    Cruz Hidalgo, Raúl; Pagonabarraga, Ignacio

    2008-06-01

    The dynamics of homogeneously heated granular gases which fragment due to particle collisions is analyzed. We introduce a kinetic model which accounts for correlations induced at the grain collisions and analyze both the kinetics and relevant distribution functions these systems develop. The work combines analytical and numerical studies based on direct simulation Monte Carlo calculations. A broad family of fragmentation probabilities is considered, and its implications for the system kinetics are discussed. We show that generically these driven materials evolve asymptotically into a dynamical scaling regime. If the fragmentation probability tends to a constant, the grain number diverges at a finite time, leading to a shattering singularity. If the fragmentation probability vanishes, then the number of grains grows monotonously as a power law. We consider different homogeneous thermostats and show that the kinetics of these systems depends weakly on both the grain inelasticity and driving. We observe that fragmentation plays a relevant role in the shape of the velocity distribution of the particles. When the fragmentation is driven by local stochastic events, the long velocity tail is essentially exponential independently of the heating frequency and the breaking rule. However, for a Lowe-Andersen thermostat, numerical evidence strongly supports the conjecture that the scaled velocity distribution follows a generalized exponential behavior f(c) approximately exp(-cn) , with n approximately 1.2 , regarding less the fragmentation mechanisms.

  8. Heavy Ion Fragmentation Experiments at the Bevatron

    NASA Technical Reports Server (NTRS)

    Heckman, H. H.

    1975-01-01

    Fragmentation processes of heavy nuclei in matter using the heavy-ion capability of the Bevatron were studied. The purpose was to obtain the single particle inclusive spectra of secondary nuclei produced at 0 deg by the fragmentation of heavy ion beam projectiles. The process being examined is B+T yields F + anything, where B is the beam nucleus, T is the target nucleus, and F is the detected fragment. The fragments F are isotopically identified by experimental procedures involving magnetic analysis, energy loss and time-of-flight measurements. Attempts were also made to: (1) measure the total and partial production cross section for all isotopes, (2) test the applicability of high-energy multi-particle interaction theory to nuclear fragmentation, (3) apply the cross-section data and fragmentation probabilities to cosmic ray transport theory, and (4) search for systematic behavior of fragment production as a means to improve existing semi-empirical theories of cross sections.

  9. Laser lithotripsy with the Ho:YAG laser: fragmentation process revealed by time-resolved imaging

    NASA Astrophysics Data System (ADS)

    Schmidlin, Franz R.; Beghuin, Didier; Delacretaz, Guy P.; Venzi, Giordano; Jichlinski, Patrice; Rink, Klaus; Leisinger, Hans-Juerg; Graber, Peter

    1998-07-01

    Improvements of endoscopic techniques have renewed the interest of urologists in laser lithotripsy in recent years. Laser energy can be easily transmitted through flexible fibers thereby enabling different surgical procedures such as cutting, coagulating and lithotripsy. The Ho:YAG laser offers multiple medical applications in Urology, among them stone fragmentation. However, the present knowledge of its fragmentation mechanism is incomplete. The objective was therefore to analyze the fragmentation process and to discuss the clinical implications related to the underlying fragmentation mechanism. The stone fragmentation process during Ho:YAG laser lithotripsy was observed by time resolved flash video imaging. Possible acoustic transient occurrence was simultaneously monitored with a PVDF-needle hydrophone. Fragmentation was performed on artificial and cystine kidney stones in water. We observed that though the fragmentation process is accompanied with the formation of a cavitation bubble, cavitation has only a minimal effect on stone fragmentation. Fragment ejection is mainly due to direct laser stone heating leading to vaporization of organic stone constituents and interstitial water. The minimal effect of the cavitation bubble is confirmed by acoustic transients measurements, which reveal weak pressure transients. Stone fragmentation with the Holmium laser is the result of vaporization of interstitial (stone) water and organic stone constituents. It is not due to the acoustic effects of a cavitation bubble or plasma formation. The fragmentation process is strongly related with heat production thereby harboring the risk of undesired thermal damage. Therefore, a solid comprehension of the fragmentation process is needed when using the different clinically available laser types of lithotripsy.

  10. Comparison of three DNA extraction methods for feed products and four amplification methods for the 5'-junction fragment of Roundup Ready soybean.

    PubMed

    Wang, Xiumin; Teng, Da; Tian, Fang; Guan, Qingfeng; Wang, Jianhua

    2012-05-09

    Three methods of DNA extraction from feed products and four detection methods for the 5'-junction fragment of genetically modified (GM) Roundup Ready soybean (RRS) were compared and evaluated. The DNA extraction methods, including cetyltrimethylammonium bromide (CTAB), sodium dodecyl sulfate (SDS), and guanidine hydrochloride (Kit), were assessed for their yields and purity of DNA, extraction time, and reagent cost. The DNA yields of CTAB, SDS, and Kit were 52-694, 164-1750 and 23-105 ng/mg sample, and their extraction time was 2.5-3, 2-2.5, and 1.5-2 h with reagent cost about US dollar 0.24, 0.13, and 1.9 per extraction, respectively. The SDS method was generally well suited to all kinds of feed matrices tested. The limits of detection for the four amplification protocols, including loop-mediated isothermal amplification (LAMP), hyperbranched rolling circle amplification (HRCA), conventional polymerase chain reaction (PCR), and real-time PCR, were 48.5, 4.85, 485, and 9 copies of the pTLH10 plasmid, respectively. The ranked results of the four detection methods were based on multiattribute utility theory as follows (from best to worse): HRCA, LAMP, PCR, and real-time PCR. This comparative evaluation was specifically useful for selection of a highly efficient DNA extraction or amplification method for detecting different GM ingredients.

  11. Impaired nitric oxide production in coronary endothelial cells of the spontaneously diabetic BB rat is due to tetrahydrobiopterin deficiency.

    PubMed Central

    Meininger, C J; Marinos, R S; Hatakeyama, K; Martinez-Zaguilan, R; Rojas, J D; Kelly, K A; Wu, G

    2000-01-01

    Endothelial cells (EC) from diabetic BioBreeding (BB) rats have an impaired ability to produce NO. This deficiency is not due to a defect in the constitutive isoform of NO synthase in EC (ecNOS) or alterations in intracellular calcium, calmodulin, NADPH or arginine levels. Instead, ecNOS cannot produce sufficient NO because of a deficiency in tetrahydrobiopterin (BH(4)), a cofactor necessary for enzyme activity. EC from diabetic rats exhibited only 12% of the BH(4) levels found in EC from normal animals or diabetes-prone animals which did not develop disease. As a result, NO synthesis by EC of diabetic rats was only 18% of that for normal animals. Increasing BH(4) levels with sepiapterin increased NO production, suggesting that BH(4) deficiency is a metabolic basis for impaired endothelial NO synthesis in diabetic BB rats. This deficiency is due to decreased activity of GTP-cyclohydrolase I, the first and rate-limiting enzyme in the de novo biosynthesis of BH(4). GTP-cyclohydrolase activity was low because of a decreased expression of the protein in the diabetic cells. PMID:10861247

  12. Oxidizing Impact Induced by Mackinawite (FeS) Nanoparticles at Oxic Conditions due to Production of Hydroxyl Radicals.

    PubMed

    Cheng, Dong; Yuan, Songhu; Liao, Peng; Zhang, Peng

    2016-11-01

    Mackinawite (FeS) nanoparticles have been extensively tested for reducing contaminants under anoxic conditions, while the oxidizing impact induced by FeS under oxic conditions has been largely underestimated. In light of previous findings that hydroxyl radicals (·OH) can be produced from oxygenation of sediment Fe(II), herein we revealed that ·OH can be produced efficiently from FeS oxygenation at circumneutral conditions, yielding 84.7 μmol ·OH per g FeS. Much more ·OH was produced from the oxygenation of FeS compared with siderite, pyrite, and zerovalent iron nanoparticles under the same conditions. The oxidation of FeS was a surface-mediated process, in which O2 was transformed by the structural Fe(II) on FeS surface to ·OH with the generation of H2O2 intermediate. A small proportion of Fe(II) was regenerated from the reduction of Fe(III) by FeS and S(-II), but this proportion did not significantly contribute to ·OH production. We further validated that the ·OH produced from FeS oxygenation considerably contributed to the oxidation of arsenic. As the change of redox conditions from anoxic to oxic is common in both natural and artificial processes, our findings suggest that the oxidizing impact induced by FeS at oxic conditions should be concerned due to ·OH production.

  13. Microbial gardening in the ocean's twilight zone: detritivorous metazoans benefit from fragmenting, rather than ingesting, sinking detritus: fragmentation of refractory detritus by zooplankton beneath the euphotic zone stimulates the harvestable production of labile and nutritious microbial biomass.

    PubMed

    Mayor, Daniel J; Sanders, Richard; Giering, Sarah L C; Anderson, Thomas R

    2014-12-01

    Sinking organic particles transfer ∼10 gigatonnes of carbon into the deep ocean each year, keeping the atmospheric CO2 concentration significantly lower than would otherwise be the case. The exact size of this effect is strongly influenced by biological activity in the ocean's twilight zone (∼50-1,000 m beneath the surface). Recent work suggests that the resident zooplankton fragment, rather than ingest, the majority of encountered organic particles, thereby stimulating bacterial proliferation and the deep-ocean microbial food web. Here we speculate that this apparently counterintuitive behaviour is an example of 'microbial gardening', a strategy that exploits the enzymatic and biosynthetic capabilities of microorganisms to facilitate the 'gardener's' access to a suite of otherwise unavailable compounds that are essential for metazoan life. We demonstrate the potential gains that zooplankton stand to make from microbial gardening using a simple steady state model, and we suggest avenues for future research.

  14. Multiparameter optimization method and enhanced production of secreted recombinant single-chain variable fragment against the HIV-1 P17 protein from Escherichia coli by fed-batch fermentation.

    PubMed

    Paopang, Porntip; Kasinrerk, Watchara; Tayapiwatana, Chatchai; Seesuriyachan, Phisit; Butr-Indr, Bordin

    2016-01-01

    The single-chain fragment variable (scFv) was used to produce a completely functional antigen-binding fragment in bacterial systems. The advancements in antibody engineering have simplified the method of producing Fv fragments and made it more efficient and generally relevant. In a previous study, the scFv anti HIV-1 P17 protein was produced by a batch production system, optimized by the sequential simplex optimization method. This study continued that work in order to enhance secreted scFv production by fed-batch cultivation, which supported high volumetric productivity and provided a large amount of scFvs for diagnostic and therapeutic research. The developments in cell culture media and process parameter settings were required to realize the maximum production of cells. This study investigated the combined optimization methods, Plackett-Burman design (PBD) and sequential simplex optimization, with the aim of optimize feed medium. Fed-batch cultivation with an optimal feeding rate was determined. The result demonstrated that a 20-mL/hr feeding rate of the optimized medium can increase cell growth, total protein production, and scFv anti-p17 activity by 4.43, 1.48, and 6.5 times more than batch cultivation, respectively. The combined optimization method demonstrated novel power tools for the optimization strategy of multiparameter experiments.

  15. Fragmentation Analysis - Fundamental Processes

    DTIC Science & Technology

    Wausau quartzite and anorthosite of 3.0 to 3.5 inch size were fragmented in this device. An analysis of the fragment distribution results of the drop...disc-shaped specimens of Wausau quartzite, anorthosite , and Felch marble were then fragmented with the impact pendulum device. Computer programs were

  16. Coordination of copper(II) ions by the fragments of neuropeptide gamma containing D1, H9, H12 residues and products of copper-catalyzed oxidation.

    PubMed

    Jankowska, Elżbieta; Pietruszka, Marta; Kowalik-Jankowska, Teresa

    2012-02-14

    A potentiometric, spectroscopic (UV-Vis, CD and EPR) and mass spectrometric (ESI-MS) study of Cu(II) binding to the (1-2,7-21)NPG, Asp(1)-Ala-Ile(7)-Ser-His(9)-Lys-Arg-His(12)-Lys-Thr-Asp-Ser-Phe-Val-Gly-Leu-Met(21)-NH(2), and Ac-(1-2,7-21)NPG, Ac-Asp(1)-Ala-Ile(7)-Ser-His(9)-Lys-Arg-His(12)-Lys-Thr-Asp-Ser-Phe-Val-Gly-Leu-Met(21)-NH(2), fragments of neuropeptide gamma were carried out. The results clearly indicate the stabilization of the 1 N {NH(2), β-COO(-)}, 2 N {NH(2), β-COO(-), N(Im)} and 3 N {NH(2), β-COO(-), 2N(Im)} complexes by the coordination of the β-carboxylate group of the D(1) residue. For the (1-2,7-21)NPG the CuH(2)L complex with 3 N {NH(2), β-COO(-), 2N(Im)}, the binding mode dominates in a wide pH range of 4-8.5. With the sequential increase of pH, deprotonated amide nitrogens are involved in copper coordination. For the Ac-(1-2,7-21)NPG peptide the imidazole nitrogen atoms are the primary metal binding sites forming macrochelates in the pH range 4 to 7. The CuHL complex with 4 N {N(Im), N(-), N(-), N(Im)} coordination mode is formed in pH range 6-9. Deprotonation and co-ordination of the third amide nitrogen were detected at pH ∼8.6. Metal-catalyzed oxidation (MCO) of proteins is mainly a site-specific process in which one or a few amino acids at metal-binding sites on the protein are preferentially oxidized. To elucidate the products of the copper(II)-catalyzed oxidation of the (1-2,7-21)NPG and Ac-(1-2,7-21)NPG, the liquid chromatography-mass spectrometry (LC-MS) method and Cu(II)/hydrogen peroxide as a model oxidizing system were employed. In the presence of hydrogen peroxide with 1 : 4 peptide-H(2)O(2) molar ratio for the Ac-(1-2,7-21)NPG peptide the oxidation of the methionine residue to methionine sulfoxide and for (1-2,7-21)NPG to sulfone was observed. For the Cu(II)-peptide-hydrogen peroxide in 1 : 1 : 4 molar ratio systems, oxidation of the histidine residues to 2-oxohistidines was detected. Under experimental

  17. The Effect of Additional Dead Space on Respiratory Exchange Ratio and Carbon Dioxide Production Due to Training

    PubMed Central

    Smolka, Lukasz; Borkowski, Jacek; Zaton, Marek

    2014-01-01

    The purpose of the study was to investigate the effects of implementing additional respiratory dead space during cycloergometry-based aerobic training. The primary outcome measures were respiratory exchange ratio (RER) and carbon dioxide production (VCO2). Two groups of young healthy males: Experimental (Exp, n = 15) and Control (Con, n = 15), participated in this study. The training consisted of 12 sessions, performed twice a week for 6 weeks. A single training session consisted of continuous, constant-rate exercise on a cycle ergometer at 60% of VO2max which was maintained for 30 minutes. Subjects in Exp group were breathing through additional respiratory dead space (1200ml), while subjects in Con group were breathing without additional dead space. Pre-test and two post-training incremental exercise tests were performed for the detection of gas exchange variables. In all training sessions, pCO2 was higher and blood pH was lower in the Exp group (p < 0.001) ensuring respiratory acidosis. A 12-session training program resulted in significant increase in performance time in both groups (from 17”29 ± 1”31 to 18”47 ± 1”37 in Exp; p=0.02 and from 17”20 ± 1”18 to 18”45 ± 1”44 in Con; p = 0.02), but has not revealed a significant difference in RER and VCO2 in both post-training tests, performed at rest and during submaximal workload. We interpret the lack of difference in post-training values of RER and VCO2 between groups as an absence of inhibition in glycolysis and glycogenolysis during exercise with additional dead space. Key Points The purpose of the study was to investigate the effects of implementing additional respiratory dead space during cycloergometry-based aerobic training on respiratory exchange ratio and carbon dioxide production. In all training sessions, respiratory acidosis was gained by experimental group only. No significant difference in RER and VCO2 between experimental and control group due to the trainings. The lack of

  18. The effect of additional dead space on respiratory exchange ratio and carbon dioxide production due to training.

    PubMed

    Smolka, Lukasz; Borkowski, Jacek; Zaton, Marek

    2014-01-01

    The purpose of the study was to investigate the effects of implementing additional respiratory dead space during cycloergometry-based aerobic training. The primary outcome measures were respiratory exchange ratio (RER) and carbon dioxide production (VCO2). Two groups of young healthy males: Experimental (Exp, n = 15) and Control (Con, n = 15), participated in this study. The training consisted of 12 sessions, performed twice a week for 6 weeks. A single training session consisted of continuous, constant-rate exercise on a cycle ergometer at 60% of VO2max which was maintained for 30 minutes. Subjects in Exp group were breathing through additional respiratory dead space (1200ml), while subjects in Con group were breathing without additional dead space. Pre-test and two post-training incremental exercise tests were performed for the detection of gas exchange variables. In all training sessions, pCO2 was higher and blood pH was lower in the Exp group (p < 0.001) ensuring respiratory acidosis. A 12-session training program resulted in significant increase in performance time in both groups (from 17"29 ± 1"31 to 18"47 ± 1"37 in Exp; p=0.02 and from 17"20 ± 1"18 to 18"45 ± 1"44 in Con; p = 0.02), but has not revealed a significant difference in RER and VCO2 in both post-training tests, performed at rest and during submaximal workload. We interpret the lack of difference in post-training values of RER and VCO2 between groups as an absence of inhibition in glycolysis and glycogenolysis during exercise with additional dead space. Key PointsThe purpose of the study was to investigate the effects of implementing additional respiratory dead space during cycloergometry-based aerobic training on respiratory exchange ratio and carbon dioxide production.In all training sessions, respiratory acidosis was gained by experimental group only.No significant difference in RER and VCO2 between experimental and control group due to the trainings.The lack of difference in post

  19. Severe von Willebrand disease due to a defect at the level of von Willebrand factor mRNA expression: Detection by exonic PCR-restriction fragment length polymorphism analysis

    SciTech Connect

    Nichols, W.C.; Lyons, S.E.; Harrison, J.S.; Cody, R.L.; Ginsburg, D. )

    1991-05-01

    von Willebrand disease (vWD), the most common inherited bleeding disorder in humans, results from abnormalities in the plasma clotting protein von Willebrand factor (vWF). Severe (type III) vWD is autosomal recessive in inheritance and is associated with extremely low or undetectable vWF levels. The authors report a method designed to distinguish mRNA expression from the two vWF alleles by PCR analysis of peripheral blood platelet RNA using DNA sequence polymorphisms located within exons of the vWF gene. This approach was applied to a severe-vWD pedigree in which three of eight siblings are affected and the parents and additional siblings are clinically normal. Each parent was shown to carry a vWF allele that is silent at the mRNA level. Family members inheriting both abnormal alleles are affected with severe vWD, whereas individuals with only one abnormal allele are asymptomatic. Given the frequencies of the two exon polymorphisms reported here, this analysis should be applicable to {approx}70% of type I and type III vWD patients. This comparative DNA and RNA PCR-restriction fragment length polymorphism approach may also prove useful in identifying defects at the level of gene expression associated with other genetic disorders.

  20. Global crop yield reductions due to surface ozone exposure: 1. Year 2000 crop production losses and economic damage

    NASA Astrophysics Data System (ADS)

    Avnery, Shiri; Mauzerall, Denise L.; Liu, Junfeng; Horowitz, Larry W.

    2011-04-01

    Exposure to elevated concentrations of surface ozone (O 3) causes substantial reductions in the agricultural yields of many crops. As emissions of O 3 precursors rise in many parts of the world over the next few decades, yield reductions from O 3 exposure appear likely to increase the challenges of feeding a global population projected to grow from 6 to 9 billion between 2000 and 2050. This study estimates year 2000 global yield reductions of three key staple crops (soybean, maize, and wheat) due to surface ozone exposure using hourly O 3 concentrations simulated by the Model for Ozone and Related Chemical Tracers version 2.4 (MOZART-2). We calculate crop losses according to two metrics of ozone exposure - seasonal daytime (08:00-19:59) mean O 3 (M12) and accumulated O 3 above a threshold of 40 ppbv (AOT40) - and predict crop yield losses using crop-specific O 3 concentration:response functions established by field studies. Our results indicate that year 2000 O 3-induced global yield reductions ranged, depending on the metric used, from 8.5-14% for soybean, 3.9-15% for wheat, and 2.2-5.5% for maize. Global crop production losses totaled 79-121 million metric tons, worth $11-18 billion annually (USD 2000). Our calculated yield reductions agree well with previous estimates, providing further evidence that yields of major crops across the globe are already being substantially reduced by exposure to surface ozone - a risk that will grow unless O 3-precursor emissions are curbed in the future or crop cultivars are developed and utilized that are resistant to O 3.

  1. Postmortem endogenous ethanol production and diffusion from the lung due to aspiration of wood chip dust in the work place.

    PubMed

    Furumiya, Junichi; Nishimura, Hiroyuki; Nakanishi, Akinori; Hashimoto, Yoshiaki

    2011-07-01

    We report an autopsy case of postmortem ethanol diffusion into the cardiac blood after aspiration of wood chips, although antemortem ethanol consumption was not evident. A man in his twenties, who was loading a truck with small wood chips in a hot, humid storehouse, was accidentally buried in a heap of chips. At the time the body was discovered, 20 h after the accident, rectal temperature was 36°C. Autopsy showed the cause of death to be asphyxia due to obstruction of the airway by aspiration of wood chips. The ethanol and n-propanol levels were significantly higher in the lungs (left, 0.603 and 0.009 mg/g; right, 0.571 and 0.006 mg/g) than in other tissues. A significant difference in ethanol concentration was observed between the left cardiac blood (0.243 mg/g) and the right femoral blood (0.042 mg/g). Low levels of ethanol and n-propanol were detected in the stomach contents (0.105 and 0.001 mg/g, respectively). In order to determine whether aspiration of wood chips affects postmortem ethanol production in the lung, we measured the ethanol and n-propanol levels of homogenized rabbit lung tissue incubated with autoclaved or non-autoclaved wood chips. Levels of ethanol and n-propanol were significantly higher in the homogenates incubated with non-autoclaved chips for 24h. The results of this animal experiment suggested that the ethanol detected in the lung was produced by putrefactive bacteria within the wood chips. After death, the ethanol produced endogenously in the lung appears to have diffused and affected the ethanol concentration of the left cardiac blood.

  2. Attenuation of urban agricultural production potential and crop water footprint due to shading from buildings and trees

    NASA Astrophysics Data System (ADS)

    Johnson, Mark S.; Lathuillière, Michael J.; Tooke, Thoreau R.; Coops, Nicholas C.

    2015-06-01

    Urban agriculture requires local water to replace ‘hydrologic externalities’ associated with food produced outside of the local area, with an accompanying shift of the water footprint (WF) for agricultural production from rural to urban areas. Water requirements of urban agriculture have been difficult to estimate due to the heterogeneity of shading from trees and buildings within urban areas. We developed CityCrop, a plant growth and evapotranspiration (ET) model that couples a 3D model of tree canopies and buildings derived from LiDAR with a ray-casting approach to estimate spatially-explicit solar inputs in combination with local climate data. Evaluating CityCrop over a 1 km2 mixed use, residential neighborhood of Vancouver Canada, we estimated median light attenuation to result in 12% reductions in both reference ET (ETo) and crop ET (ETc). However, median crop yields were reduced by only 3.5% relative to potential yield modeled without any light attenuation, while the median crop WF was 9% less than the WF for areas unimpeded by shading. Over the 75 day cropping cycle, median crop water requirements as ETc were 17% less than that required for a well-watered grass (as ETo). If all lawns in our modeled area were replaced with crops, we estimate that about 37% of the resident population could obtain the vegetable portion of their diet from within the local area over a 150 day growing season. However doing so would result in augmented water demand if watering restrictions apply to lawns only. The CityCrop model can therefore be useful to evaluate trade-offs related to urban agriculture and to inform municipal water policy development.

  3. Selectable fragmentation warhead

    DOEpatents

    Bryan, Courtney S.; Paisley, Dennis L.; Montoya, Nelson I.; Stahl, David B.

    1993-01-01

    A selectable fragmentation warhead capable of producing a predetermined number of fragments from a metal plate, and accelerating the fragments toward a target. A first explosive located adjacent to the plate is detonated at selected number of points by laser-driven slapper detonators. In one embodiment, a smoother-disk and a second explosive, located adjacent to the first explosive, serve to increase acceleration of the fragments toward a target. The ability to produce a selected number of fragments allows for effective destruction of a chosen target.

  4. Di-hadron fragmentation and mapping of the nucleon structure

    NASA Astrophysics Data System (ADS)

    Pisano, Silvia; Radici, Marco

    2016-06-01

    The fragmentation of a colored parton directly into a pair of colorless hadrons is a non-perturbative mechanism that offers important insights into the nucleon structure. Di-hadron fragmentation functions can be extracted from semi-inclusive electron-positron annihilation data. They also appear in observables describing the semi-inclusive production of two hadrons in deep-inelastic scattering of leptons off nucleons or in hadron-hadron collisions. When a target nucleon is transversely polarized, a specific chiral-odd di-hadron fragmentation function can be used as the analyzer of the net density of transversely polarized quarks in a transversely polarized nucleon, the so-called transversity distribution. The latter can be extracted through suitable single-spin asymmetries in the framework of collinear factorization, thus in a much simpler framework with respect to the traditional one in single-hadron fragmentation. At subleading twist, the same chiral-odd di-hadron fragmentation function provides the cleanest access to the poorly known twist-3 parton distribution e( x) , which is intimately related to the mechanism of dynamical chiral symmetry breaking in QCD. When sensitive to details of transverse-momentum dynamics of partons, the di-hadron fragmentation functions for a longitudinally polarized quark can be connected to the longitudinal jet handedness to explore possible effects due to CP -violation of the QCD vacuum. In this review, we outline the formalism of di-hadron fragmentation functions, we discuss different observables where they appear and we present measurements and future worldwide plans.

  5. 9 CFR 94.18 - Restrictions on importation of meat and edible products from ruminants due to bovine spongiform...

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Restrictions on importation of meat... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS RINDERPEST,...

  6. 9 CFR 94.18 - Restrictions on importation of meat and edible products from ruminants due to bovine spongiform...

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Restrictions on importation of meat... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS RINDERPEST,...

  7. 9 CFR 94.18 - Restrictions on importation of meat and edible products from ruminants due to bovine spongiform...

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false Restrictions on importation of meat... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS RINDERPEST,...

  8. 9 CFR 94.18 - Restrictions on importation of meat and edible products from ruminants due to bovine spongiform...

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Restrictions on importation of meat... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS RINDERPEST,...

  9. 9 CFR 94.18 - Restrictions on importation of meat and edible products from ruminants due to bovine spongiform...

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Restrictions on importation of meat... Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS RINDERPEST,...

  10. Selective Production of Electrostatically-Bound Adducts of Alkyl Cations/Polyoxoanions by the Collision-Induced Fragmentations of Their Quaternary Ammonium Counterparts

    NASA Astrophysics Data System (ADS)

    Cao, Jie; Xu, Chong; Fan, YanXuan; Fan, LinYuan; Zhang, XiuHui; Hu, ChangWen

    2013-06-01

    Solutions of the quaternary ammonium salts of a set of classic polyoxometalates (POMs) (Keggin [XM12O40]n-, Dawson [P2W18O62]6-, and Lindqvist [M6O19]2- (X = P, Si; M = W, Mo) were characterized by electrospray mass spectrometry. The gas-phase fragmentations of a series of quaternary ammonium-associated clusters were investigated by their collision-induced dissociations to elucidate their fragmentation mechanisms. It was found that the quaternary ammonium-associated clusters had distinctive dissociation characteristics. Moreover, the mono-quaternary ammonium-associated clusters, {NR4[POMs]}(n-1)-, shared a common fragmentation feature, that is, they decomposed exclusively into their respective alkyl cation-bound clusters irrespective of the different cation sizes and the different natures of the polyoxoanions. The optimized geometries and the binding energies of the mono cation-bound Lindqvist POM-based clusters were obtained by calculations. To the best of our knowledge, this is the first investigation of the gas-phase fragmentations of these noncovalent complexes between organic amines and inorganic POM anions by a combination of theory and mass spectrometry.

  11. Consistent quantification of climate impacts due to biogenic carbon storage across a range of bio-product systems

    SciTech Connect

    Guest, Geoffrey Bright, Ryan M. Cherubini, Francesco Strømman, Anders H.

    2013-11-15

    Temporary and permanent carbon storage from biogenic sources is seen as a way to mitigate climate change. The aim of this work is to illustrate the need to harmonize the quantification of such mitigation across all possible storage pools in the bio- and anthroposphere. We investigate nine alternative storage cases and a wide array of bio-resource pools: from annual crops, short rotation woody crops, medium rotation temperate forests, and long rotation boreal forests. For each feedstock type and biogenic carbon storage pool, we quantify the carbon cycle climate impact due to the skewed time distribution between emission and sequestration fluxes in the bio- and anthroposphere. Additional consideration of the climate impact from albedo changes in forests is also illustrated for the boreal forest case. When characterizing climate impact with global warming potentials (GWP), we find a large variance in results which is attributed to different combinations of biomass storage and feedstock systems. The storage of biogenic carbon in any storage pool does not always confer climate benefits: even when biogenic carbon is stored long-term in durable product pools, the climate outcome may still be undesirable when the carbon is sourced from slow-growing biomass feedstock. For example, when biogenic carbon from Norway Spruce from Norway is stored in furniture with a mean life time of 43 years, a climate change impact of 0.08 kg CO{sub 2}eq per kg CO{sub 2} stored (100 year time horizon (TH)) would result. It was also found that when biogenic carbon is stored in a pool with negligible leakage to the atmosphere, the resulting GWP factor is not necessarily − 1 CO{sub 2}eq per kg CO{sub 2} stored. As an example, when biogenic CO{sub 2} from Norway Spruce biomass is stored in geological reservoirs with no leakage, we estimate a GWP of − 0.56 kg CO{sub 2}eq per kg CO{sub 2} stored (100 year TH) when albedo effects are also included. The large variance in GWPs across the range of

  12. 75 FR 64314 - Product Development Program for Interventions in Patients With Severe Bleeding Due to Trauma or...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-19

    ... With Severe Bleeding Due to Trauma or Other Causes; Public Workshop AGENCY: Food and Drug... Bleeding Due to Trauma or Other Causes.'' The purpose of this public workshop is to discuss possible... resulting from trauma, has been complicated by the lack of a consensus definition of severe bleeding as...

  13. 30 CFR 1206.352 - How do I calculate the royalty due on geothermal resources used for commercial production or...

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... geothermal resources used for commercial production or generation of electricity? 1206.352 Section 1206.352... resources used for commercial production or generation of electricity? (a) If you sold geothermal resources produced from a Class I, II, or III lease at arm's length that the purchaser uses to generate...

  14. 30 CFR 1206.352 - How do I calculate the royalty due on geothermal resources used for commercial production or...

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... geothermal resources used for commercial production or generation of electricity? 1206.352 Section 1206.352... resources used for commercial production or generation of electricity? (a) If you sold geothermal resources produced from a Class I, II, or III lease at arm's length that the purchaser uses to generate...

  15. 30 CFR 1206.352 - How do I calculate the royalty due on geothermal resources used for commercial production or...

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... geothermal resources used for commercial production or generation of electricity? 1206.352 Section 1206.352... geothermal resources used for commercial production or generation of electricity? (a) If you sold geothermal... electricity, then the royalty on the geothermal resources is the gross proceeds accruing to you from the...

  16. 30 CFR 206.352 - How do I calculate the royalty due on geothermal resources used for commercial production or...

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... geothermal resources used for commercial production or generation of electricity? 206.352 Section 206.352... resources used for commercial production or generation of electricity? (a) If you sold geothermal resources produced from a Class I, II, or III lease at arm's length that the purchaser uses to generate...

  17. 30 CFR 1206.352 - How do I calculate the royalty due on geothermal resources used for commercial production or...

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... geothermal resources used for commercial production or generation of electricity? 1206.352 Section 1206.352... resources used for commercial production or generation of electricity? (a) If you sold geothermal resources produced from a Class I, II, or III lease at arm's length that the purchaser uses to generate...

  18. Fragmentation properties of metals

    SciTech Connect

    Grady, D.E.; Kipp, M.E.

    1996-06-01

    In the present study we are developing an experimental fracture material property test method specific to dynamic fragmentation. Spherical test samples of the metals of interest are subjected to controlled impulsive stress loads by acceleration to high velocities with a light-gas launcher facility and subsequent normal impact on thin plates. Motion, deformation and fragmentation of the test samples are diagnosed with multiple flash radiography methods. The impact plate materials are selected to be transparent to the x-ray method so that only test metal material is imaged. Through a systematic series of such tests, both strain-to-failure and fragmentation resistance properties are determined through this experimental method. Fragmentation property data for several steels, copper, aluminum, tantalum and titanium have been obtained to date. Aspects of the dynamic data have been analyzed with computational methods to achieve a better understanding of the processes leading to failure and fragmentation, and to test an existing computational fragmentation model.

  19. Tailored stakeholder products help provide a vulnerability and adaptation assessment of Greek forests due to climate change

    NASA Astrophysics Data System (ADS)

    Giannakopoulos, Christos; Karali, Anna; Roussos, Anargyros

    2014-05-01

    Greece, being part of the eastern Mediterranean basin, is an area particularly vulnerable to climate change and associated forest fire risk. The aim of this study is to assess the vulnerability of Greek forests to fire risk occurrence and identify potential adaptation options within the context of climate change through continuous interaction with local stakeholders. To address their needs, the following tools for the provision of climate information services were developed: 1. An application providing fire risk forecasts for the following 3 days (http://cirrus.meteo.noa.gr/forecast/bolam/index.htm) was developed from NOA to address the needs of short term fire planners. 2. A web-based application providing long term fire risk and other fire related indices changes due to climate change (time horizon up to 2050 and 2100) was developed in collaboration with the WWF Greece office to address the needs of long term fire policy makers (http://www.oikoskopio.gr/map/). 3. An educational tool was built in order to complement the two web-based tools and to further expand knowledge in fire risk modeling to address the needs for in-depth training. In particular, the second product provided the necessary information to assess the exposure to forest fires. To this aim, maps depicting the days with elevated fire risk (FWI>30) both for the control (1961-1990) and the near future period (2021-2050) were created by the web-application. FWI is a daily index that provides numerical ratings of relative fire potential based solely on weather observations. The meteorological inputs to the FWI System are daily noon values of temperature, air relative humidity, 10m wind speed and precipitation during the previous 24 hours. It was found that eastern lowlands are more exposed to fire risk followed by eastern high elevation areas, for both the control and near future period. The next step towards vulnerability assessment was to address sensitivity, ie the human-environmental conditions that

  20. Ion cyclotron emission due to collective instability of fusion products and beam ions in TFTR and JET

    NASA Astrophysics Data System (ADS)

    Dendy, R. O.; McClements, K. G.; Lashmore-Davies, C. N.; Cottrell, G. A.; Majeski, R.; Cauffman, S.

    1995-12-01

    Ion cyclotron emission (ICE) has been observed from neutral beam heated TFTR, and JET tritium experiments at sequential cyclotron harmonics of both fusion products and beam ions. The emission originates from the outer midplane plasma, where fusion products and beam ions are likely to have a drifting ring-type velocity-space distribution that is anisotropic and sharply peaked. Fusion product driven ICE in both TFTR and JET can be attributed to the magnetoacoustic cyclotron instability, which involves the excitation of obliquely propagating waves on the fast Alfven/ion Bernstein branch at cyclotron harmonics of the fusion products. Differences between ICE observations in JET and TFTR appear to reflect the sensitivity of the instability growth rate to the ratio vbirth/cA where vbirth is the fusion product birth speed and cA is the local Alfven speed for fusion products in the outer midplane edge of TFTR supershots, vbirth < cA for alpha particles in the outer midplane edge of JET, the opposite inequality applies. If sub-Alfvenic fusion products are isotropic or have undergone even a moderate degree of thermalization, the magnetoacoustic instability cannot occur. In contrast, the super-Alfvenic alpha particles that are present in the outer midplane of JET can drive the magnetoacoustic cyclotron instability even if they are isotropic or have a relatively broad distribution of speeds. These conclusions may account for the observation that fusion product driven ICE in JET persists for longer than fusion product driven ICE in TFTR. Moreover, the time evolution of the maximum growth rate, obtained using the Sigmar model for the alpha particle distribution and TFTR data for the fusion product source rate, closely follows the observed time evolution of the ICE amplitude in TFTR supershot discharges. Other observed features of fusion product driven ICE that match the linear instability include the scaling with fusion product density, doublet splitting of spectral peaks, the

  1. Dimensional effects in dynamic fragmentation of brittle materials

    NASA Astrophysics Data System (ADS)

    Linna, R. P.; Åström, J. A.; Timonen, J.

    2005-07-01

    It has been shown previously that dynamic fragmentation of brittle D -dimensional objects in a D -dimensional space gives rise to a power-law contribution to the fragment-size distribution with a universal scaling exponent 2-1/D . We demonstrate that in fragmentation of two-dimensional brittle objects in three-dimensional space, an additional fragmentation mechanism appears, which causes scale-invariant secondary breaking of existing fragments. Due to this mechanism, the power law in the fragment-size distribution has now a scaling exponent of ˜1.17 .

  2. Fragments and Coherence

    ERIC Educational Resources Information Center

    Watson, Anne

    2008-01-01

    Can teachers contact the inner coherence of mathematics while working in a context fragmented by always-new objectives, criteria, and initiatives? How, more importantly, can learners experience the inner coherence of mathematics while working in a context fragmented by testing, modular curricular, short-term learning objectives, and lessons that…

  3. Fragment Hazard Investigation Program

    DTIC Science & Technology

    1978-10-01

    53 Ballistic Density (k) ............................................. 53 Ejection A ngle (a...54 Ejection Velocity (V) ................................................. 54 DEVELOPMENT OF EMPIRICAL RELATION...5S 54 Fragment Weight Versus Gamma for Test QD-155-08 ......................... 56 55 Fragment Range Versus Ejection Angle as a Function of

  4. Fragmentation of fullerenes

    NASA Astrophysics Data System (ADS)

    Chancey, Ryan T.; Oddershede, Lene; Harris, Frank E.; Sabin, John R.

    2003-04-01

    We have performed classical molecular-dynamics simulations of the fragmentation collisions of neutral fullerenes (C24, C60, C100, and C240) with a hard wall. The interactions between the carbon atoms are modeled by a Tersoff potential and the position of each carbon atom at each time step is calculated using a sixth-order predictor-corrector method. The statistical distribution of the fragments depends on impact energy. At low energies, the fragment distribution appears symmetric, with both the large and small fragment distributions well fitted by an exponential function of the same exponent, the value of which decreases with impact energy. At intermediate energies, the distribution of the smallest fragments can be fitted equally well by a power law or an exponential function. At high impact energies, the entire fragmentation pattern is well described by a single exponential function, the exponent increasing with energy. The observed tendencies in fragment distributions as well as the obtained exponents are in agreement with experimental observations. The fragmentation behavior of the four investigated fullerenes is very similar, and it is noted that C60 appears to be the most stable.

  5. Altered Large-Ring Cyclodextrin Product Profile Due to a Mutation at Tyr-172 in the Amylomaltase of Corynebacterium glutamicum

    PubMed Central

    Srisimarat, Wiraya; Kaulpiboon, Jarunee; Krusong, Kuakarun; Zimmermann, Wolfgang

    2012-01-01

    Corynebacterium glutamicum amylomaltase (CgAM) catalyzes the formation of large-ring cyclodextrins (LR-CDs) with a degree of polymerization of 19 and higher. The cloned CgAM gene was ligated into the pET-17b vector and used to transform Escherichia coli BL21(DE3). Site-directed mutagenesis of Tyr-172 in CgAM to alanine (Y172A) was performed to determine its role in the control of LR-CD production. Both the recombinant wild-type (WT) and Y172A enzymes were purified to apparent homogeneity and characterized. The Y172A enzyme exhibited lower disproportionation, cyclization, and hydrolysis activities than the WT. The kcat/Km of the disproportionation reaction of the Y172A enzyme was 2.8-fold lower than that of the WT enzyme. The LR-CD product profile from enzyme catalysis depended on the incubation time and the enzyme concentration. Interestingly, the Y172A enzyme showed a product pattern different from that of the WT CgAM at a long incubation time. The principal LR-CD products of the Y172A mutated enzyme were a cycloamylose mixture with a degree of polymerization of 28 or 29 (CD28 or CD29), while the principal LR-CD product of the WT enzyme was CD25 at 0.05 U of amylomaltase. These results suggest that Tyr-172 plays an important role in determining the LR-CD product profile of this novel CgAM. PMID:22865069

  6. Pseudomonas protegens Pf-5 causes discoloration and pitting of mushroom caps due to the production of antifungal metabolites

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Bacteria in the diverse P. fluorescens group include mushroom pathogens, such as Pseudomonas tolaasii, and rhizosphere inhabitants known for their antifungal metabolite production and biological control of plant disease, such as Pseudomonas protegens Pf-5. Here, we report that strain Pf-5 causes bro...

  7. Pseudomonas protegens Pf-5 causes discoloration and pitting of mushroom caps due to the production of antifungal metabolites.

    PubMed

    Henkels, Marcella D; Kidarsa, Teresa A; Shaffer, Brenda T; Goebel, Neal C; Burlinson, Peter; Mavrodi, Dmitri V; Bentley, Michael A; Rangel, Lorena I; Davis, Edward W; Thomashow, Linda S; Zabriskie, T Mark; Preston, Gail M; Loper, Joyce E

    2014-07-01

    Bacteria in the diverse Pseudomonas fluorescens group include rhizosphere inhabitants known for their antifungal metabolite production and biological control of plant disease, such as Pseudomonas protegens Pf-5, and mushroom pathogens, such as Pseudomonas tolaasii. Here, we report that strain Pf-5 causes brown, sunken lesions on peeled caps of the button mushroom (Agaricus bisporus) that resemble brown blotch symptoms caused by P. tolaasii. Strain Pf-5 produces six known antifungal metabolites under the control of the GacS/GacA signal transduction system. A gacA mutant produces none of these metabolites and did not cause lesions on mushroom caps. Mutants deficient in the biosynthesis of the antifungal metabolites 2,4-diacetylphloroglucinol and pyoluteorin caused less-severe symptoms than wild-type Pf-5 on peeled mushroom caps, whereas mutants deficient in the production of lipopeptide orfamide A caused similar symptoms to wild-type Pf-5. Purified pyoluteorin and 2,4-diacetylphloroglucinol mimicked the symptoms caused by Pf-5. Both compounds were isolated from mushroom tissue inoculated with Pf-5, providing direct evidence for their in situ production by the bacterium. Although the lipopeptide tolaasin is responsible for brown blotch of mushroom caused by P. tolaasii, P. protegens Pf-5 caused brown blotch-like symptoms on peeled mushroom caps through a lipopeptide-independent mechanism involving the production of 2,4-diacetylphloroglucinol and pyoluteorin.

  8. Cutleafgroundcherry (physalis angulata) density, biomass and seed production in peanut (arachis hypogaea L.) following regrowth due to inadequate control

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A field experiment was conducted to evaluate herbicide and application timing on cutleaf groundcherry density, biomass, seed production, and crop yield in a peanut system. Treatments included: 1) a non-treated control; 2) hand pruning; 3) diclosulam applied preemergence (PRE) alone at 0.027 kg ai h...

  9. Implications of promiscuous Pim-1 kinase fragment inhibitor hydrophobic interactions for fragment-based drug design.

    PubMed

    Good, Andrew C; Liu, Jinyu; Hirth, Bradford; Asmussen, Gary; Xiang, Yibin; Biemann, Hans-Peter; Bishop, Kimberly A; Fremgen, Trisha; Fitzgerald, Maria; Gladysheva, Tatiana; Jain, Annuradha; Jancsics, Katherine; Metz, Markus; Papoulis, Andrew; Skerlj, Renato; Stepp, J David; Wei, Ronnie R

    2012-03-22

    We have studied the subtleties of fragment docking and binding using data generated in a Pim-1 kinase inhibitor program. Crystallographic and docking data analyses have been undertaken using inhibitor complexes derived from an in-house surface plasmon resonance (SPR) fragment screen, a virtual needle screen, and a de novo designed fragment inhibitor hybrid. These investigations highlight that fragments that do not fill their binding pocket can exhibit promiscuous hydrophobic interactions due to the lack of steric constraints imposed on them by the boundaries of said pocket. As a result, docking modes that disagree with an observed crystal structure but maintain key crystallographically observed hydrogen bonds still have potential value in ligand design and optimization. This observation runs counter to the lore in fragment-based drug design that all fragment elaboration must be based on the parent crystal structure alone.

  10. Classical complement pathway component C1q: purification of human C1q, isolation of C1q collagen-like and globular head fragments and production of recombinant C1q-derivatives. Functional characterization.

    PubMed

    Kojouharova, Mihaela

    2014-01-01

    The classical complement pathway (CCP) activation is a multimolecular complex, composed of three subcomponents namely C1q, C1r, and C1s. C1q is the recognition subunit of this complex and its binding to the specific targets leads to the formation of active C1, which in turn activates the CCP in an immunoglobulin-dependent or -independent manner. C1q is a hexameric glycoprotein composed of 18 polypeptide chains of three different types (A, B, and C), organized in two fragments-collagen-like (CLR) and globular head (gC1q) possessing different functional activity. The contemporary knowledge of the C1q structure allows the isolation and purification of a C1q molecule from serum by combination of different chromatography procedures including ion-exchange, size-exclusion, and affinity chromatography, as well as the isolation of CLR and gC1q by limited enzymatic hydrolysis of the native C1q molecule. In this chapter, we described methods for purification of human C1q and its CLR and gC1q fragments, as well as methods for their biochemical and functional characterization. The production and purification of recombinant C1q derivatives ghA, ghB, and ghC (globular fragments of the individual C1q chains) are also presented.

  11. Allergy to cocamidopropyl betaine may be due to amidoamine: a patch test and product use test study.

    PubMed

    Fowler, J F; Fowler, L M; Hunter, J E

    1997-12-01

    Cocamidopropyl betaine (CAPB) is an amphoteric surfactant commonly used in personal care products and surface cleaners. Patch testing with commercially-available CAPB has yielded occasional reactions indicative of allergic contact dermatitis. To determine if subjects with previous positive patch tests would react in provocative use tests of products containing CAPB, and to study various contaminants in commercial CAPB supplies for allergenicity in these subjects, 10 subjects previously positive to CAPB on patch testing used a hair shampoo, hand soap, and body wash containing CAPB for 1-6 weeks or until a reaction developed. Later, they were patch tested to 2 different purity grades of CAPB and 3 possible manufacturing contaminants (dimethylaminopropylamine, amidoamine, and sodium monochloroacetate). 7 of the 10 subjects developed dermatitis from 1 or more CAPB-containing products at some point during the study. 9 of the 10 use-test subjects were then patch tested, and 6 of these subjects showed a reaction to amidoamine (0.1% aq.). None reacted to dimethylaminopropylamine (0.1% pet.). 1 subject reacted to CAPB but not to amidoamine. In the follow-up patch testing with CAPB that was free of amidoamine, there were no positive reactions. Most subjects who were patch-test-positive showed a reaction when using CAPB-containing skin and hair care products. The chemical amidoamine, which is used in the synthesis of CAPB and which is a known contaminant of CAPB preparations, is likely to be the actual sensitizer in most cases rather than CAPB itself. The results do not rule out the possibility that CAPB itself may be an allergen in rare cases.

  12. Secondary fragmentation routes of glycine in ice under irradiation

    NASA Astrophysics Data System (ADS)

    Pernet, A.; Pilme, J.; Ellinger, Y.

    2011-05-01

    The question of the relative stability of the complex organic molecules (COM) under the interstellar radiation field is a crucial question, especially in the context of the panspermia hypothesis for which their survival during the transfer from space to the Earth is a necessary condition for the appearance of life (Ehrenfreund et al 2001, 2002). Assuming that these species are originally embedded in interstellar grains, their resistance to the solar UV radiation in ice is a key issue. The case of glycine, H2NCH2COOH, has been considered recently in irradiation experiments carried out at the SOLEIL synchrotron facility. It appeared that glycine is partially protected by ice but also suffers some fragmentation leading in the end to CO2 and to CN containing species. Quantum chemical simulations have been performed in parallel for all the possible fragmentations of neutral, ionized, doubly ionized, protonated and zwitterionic glycine (Lattelais et al. 2010). This study has shown that the primary decomposition routes leading to fragments CH2COOH, H2NCH2, H2NCH2+, CH2COOH+, H2NCH3, and CO2 are energetically valid. The experiments have also shown that the role of water is mainly to increase the production of the end products in the photoreactions, most probably due to the reactions with the OH radicals formed during the irradiation of the ice. We present a theoretical study of the secondary fragmentation channels initiated by the OH radical by means of quantum chemical calculations using DFT and ab initio correlated methods (MP2,CCSD(T)). We have examined all the possible secondary fragmentations starting from the primary fragments mentioned above. We considered all species embedded in the dielectric continuum simulating an icy environment (comparison with the gas phase situation serves as reference). Thermodynamic stabilities as well as activation barriers have been determined. This study shows that the formation of the HCN molecule as end product is energetically

  13. Opaque rock fragments

    SciTech Connect

    Abhijit, B.; Molinaroli, E.; Olsen, J.

    1987-05-01

    The authors describe a new, rare, but petrogenetically significant variety of rock fragments from Holocene detrital sediments. Approximately 50% of the opaque heavy mineral concentrates from Holocene siliciclastic sands are polymineralic-Fe-Ti oxide particles, i.e., they are opaque rock fragments. About 40% to 70% of these rock fragments show intergrowth of hm + il, mt + il, and mt + hm +/- il. Modal analysis of 23,282 opaque particles in 117 polished thin sections of granitic and metamorphic parent rocks and their daughter sands from semi-arid and humid climates show the following relative abundances. The data show that opaque rock fragments are more common in sands from igneous source rocks and that hm + il fragments are more durable. They assume that equilibrium conditions existed in parent rocks during the growth of these paired minerals, and that the Ti/Fe ratio did not change during oxidation of mt to hm. Geothermometric determinations using electron probe microanalysis of opaque rock fragments in sand samples from Lake Erie and the Adriatic Sea suggest that these rock fragments may have equilibrated at approximately 900/sup 0/ and 525/sup 0/C, respectively.

  14. Production of A=16, 20 and 24 in alpha-induced fragmentation of ^28Si at 102.7 (cm) MeV

    NASA Astrophysics Data System (ADS)

    Sabra, Mohammad S.; Bary Malik, F.

    2004-10-01

    The emission probabilities of particles of mass numbers 16, 20 and 24 in 102.7 (cm) MeV alpha-induced fragmentation of ^28Si have been calculated using the statistical model of [1]. This model is distinct from the usual evaporation model in the sense that it takes into account the final state interaction between two emerging fragments. Calculated emission probabilities indicate that particles are emitted in all possible excited states commensurate with energy conservation law. The emission spectra as a function of excitation energy and the most probable kinetic energy associated with it will be presented. Calculated differential cross sections at 30^o for these masses are in agreement with the data of [2]. The final state interaction is obtained by a scaling procedure. The emission probabilities of different isotopes of these masses will also be presented. 1. B. Compani-Tabrizi and F. B. Malik, J. Phys. G: Nucl. Phys. 8, 1447 (1982). 2. L. W. Woo et al. Phys. Rev. C 47, 267 (1993).

  15. Soil carbon stocks in response to management changes due to vinasse application in sugarcane production in southeast of Brazil

    NASA Astrophysics Data System (ADS)

    Fernandes Zani, Caio; Simoes Barneze, Arlete; Clemente Cerri, Carlos

    2014-05-01

    Brazilian commodities, such as ethanol, are looking for sustainable production to suit the international market demands. Thus, studies about variations in soil carbon (C) stocks on the ethanol production are essential. Researches in relation of land use change are already been developed; however information about management changes on the sugarcane production is needed. According to Six et al. (2004) changing the management to conservationist practices can provide an organic matter accumulation to the soil and in a long-term, can increase the soil C stocks. The vinasse is a waste product of the sugarcane industry fuel which contains potassium and considerable quantities of other mineral nutrients. It is estimated that for each litre of ethanol produced is generated approximately 13 L of vinasse. Nowadays, almost all vinasse is applied to the soil as fertigation (Soares et al., 2009). The aim of this study was to evaluate the changes in soil C stocks after the management change with or without vinasse application into sugarcane production in southeast Brazil. The soil sampling was carried out in a fuel industry located in São Paulo state, on July 2013. This area was always used a conventional management at least 34 years with application of mineral fertilizer. However, in the mid of 1990, one part of this area started to use vinasse as source of potassium in sugarcane production. In view of this, we conducted the experiment in these two areas of conventional management: i) without vinasse and ii) with vinasse application. Soil samples were collected in the nine trenches in each site: three trenches at 1 m soil depth and six mini-trenches up to 0.3 m. Samples were used to calculate the bulk density using the undisturbed method with a steel cylinder. Total C was measured by dry combustion on Carbon Analyzer - LECO® CN 2000®. The results showed that C content was a decrease with an increase soil depth. Soil C stocks for areas without vinasse application and vinasse

  16. Universality in Fragmentation

    NASA Astrophysics Data System (ADS)

    Åström, J. A.; Holian, B. L.; Timonen, J.

    2000-04-01

    Fragmentation of a two-dimensional brittle solid by impact and ``explosion,'' and a fluid by ``explosion'' are all shown to become critical. The critical points appear at a nonzero impact velocity, and at infinite explosion duration, respectively. Within the critical regimes, the fragment-size distributions satisfy a scaling form qualitatively similar to that of the cluster-size distribution of percolation, but they belong to another universality class. Energy balance arguments give a correlation length exponent that is exactly one-half of its percolation value. A single crack dominates fragmentation in the slow-fracture limit, as expected.

  17. Golgi fragmentation in Alzheimer's disease

    PubMed Central

    Joshi, Gunjan; Bekier, Michael E.; Wang, Yanzhuang

    2015-01-01

    The Golgi apparatus is an essential cellular organelle for post-translational modifications, sorting, and trafficking of membrane and secretory proteins. Proper functionality of the Golgi requires the formation of its unique cisternal-stacking morphology. The Golgi structure is disrupted in a variety of neurodegenerative diseases, suggesting a common mechanism and contribution of Golgi defects in neurodegenerative disorders. A recent study on Alzheimer's disease (AD) revealed that phosphorylation of the Golgi stacking protein GRASP65 disrupts its function in Golgi structure formation, resulting in Golgi fragmentation. Inhibiting GRASP65 phosphorylation restores the Golgi morphology from Aβ-induced fragmentation and reduces Aβ production. Perturbing Golgi structure and function in neurons may directly impact trafficking, processing, and sorting of a variety of proteins essential for synaptic and dendritic integrity. Therefore, Golgi defects may ultimately promote the development of AD. In the current review, we focus on the cellular impact of impaired Golgi morphology and its potential relationship to AD disease development. PMID:26441511

  18. Ion cyclotron emission due to the newly-born fusion products induced fast Alfven wave radiative instabilities in tokamaks

    SciTech Connect

    Arunasalam, V.

    1995-08-01

    The velocity distribution functions of the newly born (t = 0) charged fusion products of tokamak discharges can be approximated by a monoenergetic ring distribution with a finite v{sub {parallel}} such that v{sub {perpendicular}} {approx} v{sub {parallel}} {approx} v{sub j} where (M{sub j}V{sub j}{sup 2}/2) = E{sub j}, the directed birth energy of the charged fusion product species j of mass M{sub j}. As the time t progresses these distribution functions will evolve into a Gaussian in velocity with thermal spreadings given by the perpendicular and parallel temperatures T{sub {perpendicular}j}(t) = T{sub {parallel}j}(t) with T{sub j}(t) increasing as t increases and finally reaches an isotropic saturation value of T{sub {perpendicular}j}(t {approx} {tau}{sub j}) = T{sub {parallel}j}(t {approx} {tau}{sub j}) = T{sub j}(t {approx} {tau}{sub j}) {approx} [M{sub j}T{sub d}E{sub j}/(M{sub j} + M)]{sup 1/2}, where T{sub d} is the temperature of the background deuterium plasma ions, M is the mass of a triton or a neutron for j = protons and alpha particles, respectively, and {tau}{sub j} {approx} {tau}{sub sj}/4 is the thermalization time of the fusion product species j in the background deuterium plasma and {tau}{sub sj} is the slowing-down time. For times t of the order of {tau}{sub j} their distributions can be approximated by a Gaussian in their total energy. Then for times t {ge} {tau}{sub sj} the velocity distributions of these fusion products will relax towards their appropriate slowing-down distributions. Here the authors will examine the radiative stability of all these distributions. The ion cyclotron emission from energetic ion produced by fusion reactions or neutral beam injection promises to be a useful diagnostic tool.

  19. Heavy ion fragmentation experiments at the bevatron

    NASA Technical Reports Server (NTRS)

    Heckman, H. H.

    1976-01-01

    Collaborative research efforts to study the fragmentation processes of heavy nuclei in matter using heavy ion beams of the Bevatron/Bevalac are described. The goal of the program is to obtain the single particle inclusive spectra of secondary nuclei produced at 0 deg by the fragmentation of heavy ion beam projectiles. The process being examined is B+T yields F + anything, where B is the beam nucleus, T is the target nucleus, and F is the detected fragment. The fragments F are isotopically identified by experimental procedures involving magnetic analysis, energy loss and time-of-flight measurements. Effects were also made to: (a) study processes of heavy nuclei in matter, (b) measure the total and partial production cross section for all isotopes, (c) test the applicability of high energy multiparticle interaction theory to nuclear fragmentation, (d) apply the cross section data and fragmentation probabilities to cosmic ray transport theory, and (e) search for systematic behavior of fragment production as a means to improve existing semi-empirical theories of cross-sections.

  20. Probabilistic approach for assessing infants' health risks due to ingestion of nanoscale silver released from consumer products.

    PubMed

    Pang, Chengfang; Hristozov, Danail; Zabeo, Alex; Pizzol, Lisa; Tsang, Michael P; Sayre, Phil; Marcomini, Antonio

    2017-02-01

    Silver nanoparticles (n-Ag) are widely used in consumer products and many medical applications because of their unique antibacterial properties. Their use is raising concern about potential human exposures and health effects. Therefore, it is informative to assess the potential human health risks of n-Ag in order to ensure that nanotechnology-based consumer products are deployed in a safe and sustainable way. Even though toxicity studies clearly show the potential hazard of n-Ag, there have been few attempts to integrate hazard and exposure assessments to evaluate risks. The underlying reason for this is the difficulty in characterizing exposure and the lack of toxicity studies essential for human health risk assessment (HHRA). Such data gaps introduce significant uncertainty into the risk assessment process. This study uses probabilistic methods to assess the relative uncertainty and potential risks of n-Ag exposure to infants. In this paper, we estimate the risks for infants potentially exposed to n-Ag through drinking juice or milk from sippy cups or licking baby blankets containing n-Ag. We explicitly evaluate uncertainty and variability contained in available dose-response and exposure data in order to make the risk characterization process transparent. Our results showed that individual margin of exposures for oral exposure to sippy cups and baby blankets containing n-Ag exhibited minimal risk.

  1. Carbon emissions due to deforestation for the production of charcoal used in Brazil’s steel industry

    NASA Astrophysics Data System (ADS)

    Sonter, Laura J.; Barrett, Damian J.; Moran, Chris J.; Soares-Filho, Britaldo S.

    2015-04-01

    Steel produced using coal generates 7% of global anthropogenic CO2 emissions annually. Opportunities exist to substitute this coal with carbon-neutral charcoal sourced from plantation forests to mitigate project-scale emissions and obtain certified emission reduction credits under the Kyoto Protocol’s Clean Development Mechanism. This mitigation strategy has been implemented in Brazil and is one mechanism among many used globally to reduce anthropogenic CO2 emissions; however, its potential adverse impacts have been overlooked to date. Here, we report that total CO2 emitted from Brazilian steel production doubled (91 to 182 MtCO2) and specific emissions increased (3.3 to 5.2 MtCO2 per Mt steel) between 2000 and 2007, even though the proportion of coal used declined. Infrastructure upgrades and a national plantation shortage increased industry reliance on charcoal sourced from native forests, which emits up to nine times more CO2 per tonne of steel than coal. Preventing use of native forest charcoal could have avoided 79% of the CO2 emitted from steel production between 2000 and 2007; however, doing so by increasing plantation charcoal supply is limited by socio-economic costs and risks further indirect deforestation pressures and emissions. Effective climate change mitigation in Brazil’s steel industry must therefore minimize all direct and indirect carbon emissions generated from steel manufacture.

  2. Stochastic simulation of fission product activity in primary coolant due to fuel rod failures in typical PWRs under power transients

    NASA Astrophysics Data System (ADS)

    Iqbal, M. Javed; Mirza, Nasir M.; Mirza, Sikander M.

    2008-01-01

    During normal operation of PWRs, routine fuel rods failures result in release of radioactive fission products (RFPs) in the primary coolant of PWRs. In this work, a stochastic model has been developed for simulation of failure time sequences and release rates for the estimation of fission product activity in primary coolant of a typical PWR under power perturbations. In the first part, a stochastic approach is developed, based on generation of fuel failure event sequences by sampling the time dependent intensity functions. Then a three-stage model based deterministic methodology of the FPCART code has been extended to include failure sequences and random release rates in a computer code FPCART-ST, which uses state-of-the-art LEOPARD and ODMUG codes as its subroutines. The value of the 131I activity in primary coolant predicted by FPCART-ST code has been found in good agreement with the corresponding values measured at ANGRA-1 nuclear power plant. The predictions of FPCART-ST code with constant release option have also been found to have good agreement with corresponding experimental values for time dependent 135I, 135Xe and 89Kr concentrations in primary coolant measured during EDITHMOX-1 experiments.

  3. Reversal of global atmospheric ethane and propane trends largely due to US oil and natural gas production

    NASA Astrophysics Data System (ADS)

    Helmig, Detlev; Rossabi, Samuel; Hueber, Jacques; Tans, Pieter; Montzka, Stephen A.; Masarie, Ken; Thoning, Kirk; Plass-Duelmer, Christian; Claude, Anja; Carpenter, Lucy J.; Lewis, Alastair C.; Punjabi, Shalini; Reimann, Stefan; Vollmer, Martin K.; Steinbrecher, Rainer; Hannigan, James W.; Emmons, Louisa K.; Mahieu, Emmanuel; Franco, Bruno; Smale, Dan; Pozzer, Andrea

    2016-07-01

    Non-methane hydrocarbons such as ethane are important precursors to tropospheric ozone and aerosols. Using data from a global surface network and atmospheric column observations we show that the steady decline in the ethane mole fraction that began in the 1970s halted between 2005 and 2010 in most of the Northern Hemisphere and has since reversed. We calculate a yearly increase in ethane emissions in the Northern Hemisphere of 0.42 (+/-0.19) Tg yr-1 between mid-2009 and mid-2014. The largest increases in ethane and the shorter-lived propane are seen over the central and eastern USA, with a spatial distribution that suggests North American oil and natural gas development as the primary source of increasing emissions. By including other co-emitted oil and natural gas non-methane hydrocarbons, we estimate a Northern Hemisphere total non-methane hydrocarbon yearly emission increase of 1.2 (+/-0.8) Tg yr-1. Atmospheric chemical transport modelling suggests that these emissions could augment summertime mean surface ozone by several nanomoles per mole near oil and natural gas production regions. Methane/ethane oil and natural gas emission ratios could suggest a significant increase in associated methane emissions; however, this increase is inconsistent with observed leak rates in production regions and changes in methane's global isotopic ratio.

  4. Sequential extraction analyses of Hg speciation in northern lake sediments undergoing primary production increases due to recent warming.

    NASA Astrophysics Data System (ADS)

    Outridge, Peter

    2013-04-01

    The "algal scavenging" hypothesis has been proposed to account for the discrepancy between increasing Hg fluxes in northern Canadian lake sediments while atmospheric Hg concentrations over recent decades have been declining. We propose that increased algal scavenging, due to higher phytoplankton growth caused by a change in lake ice regimes, can increase the sedimentation rate of available Hg from the water column. One consequence would be that sediment Hg fluxes are disconnected from the rate of atmospheric Hg deposition in northern regions. A prediction which flows from this hypothesis is that higher Hg concentrations would be found in the organic-bound fraction in sediments deposited during recent and medieval warm periods, compared to sediments deposited during cooler periods. Here, we present sequential fractionation data on sediment Hg, from recent decades in three Arctic lakes and from the Medieval Warm Period in one of these lakes. The veracity of the hypothesis will be evaluated in the light of these data.

  5. Healthcare utilization and lost productivity due to infectious gastroenteritis, results from a national cross-sectional survey Australia 2008-2009.

    PubMed

    Chen, Y; Ford, L; Hall, G; Dobbins, T; Kirk, M

    2016-01-01

    The aim of this study was to estimate the healthcare usage and loss of productivity due to gastroenteritis in Australia using the National Gastroenteritis Survey II. In 2008-2009, 7578 participants across Australia were surveyed about infectious gastroenteritis by telephone interview. A gastroenteritis case was defined as a person experiencing ⩾ 3 loose stools and/or ⩾ 2 vomits in a 24-h period, excluding cases with a non-infectious cause for their symptoms, such as pregnancy or consumption of alcohol. Lost productivity was considered any lost time from full- or part-time paid work due to having gastroenteritis or caring for someone with the illness. Interference with other daily activities was also examined along with predictors of healthcare-seeking practices using multivariable regression. Results were weighted to obtain nationally representative estimates using Stata v. 13·1. Of the 341 cases, 52 visited a doctor due to gastroenteritis, 126 reported taking at least one medication for their symptoms and 79 cases reported missing ⩾ 1 days' paid work due to gastroenteritis. Gastroenteritis results in a total of 13·1 million (95% confidence interval 6·7-19·5) days of missed paid work each year in Australia. The indirect costs of gastroenteritis are significant, particularly from lost productivity.

  6. Fragmentation in Biaxial Tension

    SciTech Connect

    Campbell, G H; Archbold, G C; Hurricane, O A; Miller, P L

    2006-06-13

    We have carried out an experiment that places a ductile stainless steel in a state of biaxial tension at a high rate of strain. The loading of the ductile metal spherical cap is performed by the detonation of a high explosive layer with a conforming geometry to expand the metal radially outwards. Simulations of the loading and expansion of the metal predict strain rates that compare well with experimental observations. A high percentage of the HE loaded material was recovered through a soft capture process and characterization of the recovered fragments provided high quality data, including uniform strain prior to failure and fragment size. These data were used with a modified fragmentation model to determine a fragmentation energy.

  7. A Monte Carlo study of the radiation quality dependence of DNA fragmentation spectra.

    PubMed

    Alloni, D; Campa, A; Belli, M; Esposito, G; Facoetti, A; Friedland, W; Liotta, M; Mariotti, L; Paretzke, H G; Ottolenghi, A

    2010-03-01

    We simulated the irradiation of human fibroblasts with gamma rays, protons and helium, carbon and iron ions at a fixed dose of 5 Gy. The simulations were performed with the biophysical Monte Carlo code PARTRAC. From the output of the code, containing in particular the genomic positions of the radiation-induced DNA double-strand breaks (DSBs), we obtained the DNA fragmentation spectra. Very small fragments, in particular those related to "complex lesions" (few tens of base pairs), are probably very important for the late cellular consequences, but their detection is not possible with the common experimental techniques. We paid special attention to the differences among the various ions in the production of these very small fragments; in particular, we compared the fragmentation spectra for ions of the same specific energy and for ions of the same LET (linear energy transfer). As found previously for iron ions, we found that the RBE (relative biological effectiveness) for DSB production was considerably higher than 1 for all high-LET radiations considered. This is at variance with the results obtainable from experimental data, and it is due to the ability to count the contribution of small fragments. It should be noted that for a given LET this RBE decreases with increasing ion charge, due mainly to the increasing mean energy of secondary electrons. A precise quantification of the DNA initial damage can be of great importance for both radiation protection, particularly in open-space long-term manned missions, and hadrontherapy.

  8. Using ground data of the Global Terrestrial Network of Permafrost (GTN-P) for the evaluation of ESA Data User Element (DUE) Permafrost remote sensing derived products

    NASA Astrophysics Data System (ADS)

    Elger, K.; Heim, B.; Bartsch, A.; Paulik, Ch.; Duguay, C.; Hachem, S.; Soliman, A.; Boike, J.; Langer, M.; Lantuit, H.

    2012-04-01

    Permafrost is one of the essential climate variables addressed by the Global Terrestrial Observing System (GCOS). Remote sensing data provide area-wide monitoring of e.g. surface temperatures or soil surface status (frozen or thawed state) in the Arctic and Subarctic, where ground data collection is difficult and restricted to local measurements at few monitoring sites. The task of the ESA Data User Element (DUE) Permafrost project is to build-up an Earth observation service for northern high-latitudinal permafrost applications with extensive involvement of the international permafrost research community (www.ipf.tuwien.ac.at/permafrost). The satellite-derived DUE Permafrost products are Land Surface Temperature, Surface Soil Moisture, Surface Frozen and Thawed State, Digital Elevation Model (locally as remote sensing product and circumpolar as non-remote sensing product) and Subsidence, and Land Cover. Land Surface Temperature, Surface Soil Moisture, and Surface Frozen and Thawed State will be provided for the circumpolar permafrost area north of 55° N with 25 km spatial resolution. In addition, regional products with higher spatial resolution were developed for five case study regions in different permafrost zones of the tundra and taiga (Laptev Sea [RU], Central Yakutia [RU], Western Siberia [RU], Alaska N-S transect, [US] Mackenzie River and Valley [CA]). This study shows the evaluation of two DUE Permafrost regional products, Land Surface Temperature and Surface Frozen and Thawed State, using freely available ground truth data from the Global Terrestrial Network of Permafrost (GTN-P) and monitoring data from the Russian-German Samoylov research station in the Lena River Delta (Central Siberia, RU). The GTN-P permafrost monitoring sites with their position in different permafrost zones are highly qualified for the validation of DUE Permafrost remote sensing products. Air and surface temperatures with high-temporal resolution from eleven GTN-P sites in Alaska

  9. Hydrogen cyanide production due to mid-size impacts in a redox-neutral N2-rich atmosphere.

    PubMed

    Kurosawa, Kosuke; Sugita, Seiji; Ishibashi, Ko; Hasegawa, Sunao; Sekine, Yasuhito; Ogawa, Nanako O; Kadono, Toshihiko; Ohno, Sohsuke; Ohkouchi, Naohiko; Nagaoka, Yoichi; Matsui, Takafumi

    2013-06-01

    Cyanide compounds are amongst the most important molecules of the origin of life. Here, we demonstrate the importance of mid-size (0.1-1 km in diameter) hence frequent meteoritic impacts to the cyanide inventory on the early Earth. Subsequent aerodynamic ablation and chemical reactions with the ambient atmosphere after oblique impacts were investigated by both impact and laser experiments. A polycarbonate projectile and graphite were used as laboratory analogs of meteoritic organic matter. Spectroscopic observations of impact-generated ablation vapors show that laser irradiation to graphite within an N2-rich gas can produce a thermodynamic environment similar to that produced by oblique impacts. Thus, laser ablation was used to investigate the final chemical products after this aerodynamic process. We found that a significant fraction (>0.1 mol%) of the vaporized carbon is converted to HCN and cyanide condensates, even when the ambient gas contains as much as a few hundred mbar of CO2. As such, the column density of cyanides after carbon-rich meteoritic impacts with diameters of 600 m would reach ~10 mol/m(2) over ~10(2) km(2) under early Earth conditions. Such a temporally and spatially concentrated supply of cyanides may have played an important role in the origin of life.

  10. ESA DUE Permafrost: Evaluation of remote sensing derived products using ground data from the Global Terrestrial Network of Permafrost (GTN-P)

    NASA Astrophysics Data System (ADS)

    Elger, K. K.; Heim, B.; Lantuit, H.; Boike, J.; Bartsch, A.; Paulik, C.; Duguay, C. R.; Hachem, S.; Soliman, A. S.

    2011-12-01

    The task of the ESA DUE Permafrost project is to build up an Earth observation service for high-latitudinal permafrost applications with extensive involvement of the permafrost research community. The DUE Permafrost products derived from remote sensing are land surface temperature (LST), surface soil moisture (SSM), surface frozen and thawed state (freeze/ thaw), terrain, land cover, and surface waters. Weekly and monthly averages for most of the DUE Permafrost products will be made available for the years 2007-2010. The DUE Permafrost products are provided for the circumpolar permafrost area (north of 55°N) with 25 km spatial resolution. In addition, regional products with higher spatial resolution (300-1000 m/ pixel) were developed for five case study regions. These regions are: (1) the Laptev Sea and Eastern Siberian Sea Region (RU, continuous very cold permafrost/ tundra), (2) the Yakutsk Region (RU, continuous cold permafrost/ taiga), (3) the Western Siberian transect including Yamal Peninsula and Ob Region (RU, continuous to discontinuous/ taiga-tundra), (4) the Alaska Highway Transect (US, continuous to discontinuous/ taiga-tundra), and (5) the Mackenzie Delta and Valley Transect (CA, continuous to discontinuous/ taiga-tundra). The challenge of the programme is to adapt remote sensing products that are well established and tested in agricultural low and mid-latitudinal areas for highly heterogeneous taiga/ tundra permafrost landscapes in arctic regions. Ground data is essential for the evaluation of DUE Permafrost products and is provided by user groups and global networks. A major part of the DUE Permafrost core user group is contributing to GTN-P, the Global Terrestrial Network of Permafrost. Its main programmes, the Circumpolar Active Layer Monitoring (CALM) and the Thermal State of Permafrost (TSP) have been thoroughly overhauled during the last International Polar Year (2007-2008). Their spatial coverage has been extended to provide a true circumpolar

  11. Impacts of B-factory measurements on determination of fragmentation functions from electron-positron annihilation data

    NASA Astrophysics Data System (ADS)

    Hirai, M.; Kawamura, H.; Kumano, S.; Saito, K.

    2016-11-01

    Fragmentation functions are determined for the pion and kaon by global analyses of charged-hadron production data in electron-positron annihilation. Accurate measurements were reported by the Belle and BaBar collaborations for the fragmentation functions at the center-of-mass energies of 10.52 and 10.54 GeV, respectively, at the KEK and SLAC B factories, whereas other available ee measurements were mostly done at higher energies, mainly at the Z mass of 91.2 GeV. There is a possibility that gluon fragmentation functions, as well as quark fragmentation functions, are accurately determined by scaling violation. We report our global analysis of the fragmentation functions especially to show impacts of the B-factory measurements on the fragmentation function determination. Our results indicate that the fragmentation functions are determined more accurately not only by the scaling violation but also by the high-statistical nature of the Belle and BaBar data. However, there are some tensions between the Belle and BaBar data in comparison with previous measurements. We also explain how the flavor dependence of quark fragmentation functions and the gluon function are separated by using measurements at different Q values. In particular, the electric and weak charges are different depending on the quark type, so that a light-quark flavor separation also became possible in principle due to the precise data at both √s ≃10.5 and 91.2 GeV.

  12. A methodology for the evaluation of the turbine jet engine fragment threat to generic air transportable containers

    SciTech Connect

    Harding, D.C.; Pierce, J.D.

    1993-06-01

    Uncontained, high-energy gas turbine engine fragments are a potential threat to air-transportable containers carried aboard jet aircraft. The threat to a generic example container is evaluated by probability analyses and penetration testing to demonstrate the methodology to be used in the evaluation of a specific container/aircraft/engine combination. Fragment/container impact probability is the product of the uncontained fragment release rate and the geometric probability that a container is in the path of this fragment. The probability of a high-energy rotor burst fragment from four generic aircraft engines striking one of the containment vessels aboard a transport aircraft is approximately 1.2 {times} 10{sup {minus}9} strikes/hour. Finite element penetration analyses and tests can be performed to identify specific fragments which have the potential to penetrate a generic or specific containment vessel. The relatively low probability of engine fragment/container impacts is primarily due to the low release rate of uncontained, hazardous jet engine fragments.

  13. Production, crystallization, and preliminary X-ray analysis of rabbit skeletal muscle troponin complex consisting of troponin C and fragment (1-47) of troponin I.

    PubMed Central

    Saijo, Y.; Takeda, S.; Scherer, A.; Kobayashi, T.; Maéda, Y.; Taniguchi, H.; Yao, M.; Wakatsuki, S.

    1997-01-01

    Troponin is a ternary protein complex consisting of subunits TnC. TnI, and TnT, and plays a key role in calcium regulation of the skeletal and cardiac muscle contraction. In the present study, a partial complex (CI47) was prepared from Escherichia coli-expressed rabbit skeletal muscle TnC and fragment 1-47 of TnI, which is obtained by chemical cleavage of an E. coli-expressed mutant of rabbit skeletal muscle TnI. Within the ternary troponin complex, CI47 is thought to form a core that is resistant to proteolytic digestion, and the interaction within CI47 likely maintains the integrity of the troponin complex. Complex CI47 was crystallized in the presence of sodium citrate. The addition of trehalose improved the diffraction pattern of the crystals substantially. The crystal lattice belongs to the space group P3(1)(2)21, with unit cell dimensions a = b = 48.2 A, c = 162 A. The asymmetric unit presumably contains one CI47 complex. Soaking with p-chloromercuribenzenesulfonate (PCMBS) resulted in loss of isomorphism, but enhanced the quality of the crystals. The crystals diffracted up to 2.3 A resolution, with completeness of 91% and R(merge) = 6.4%. The crystals of PCMBS-derivative should be suitable for X-ray studies using the multiple-wavelength anomalous diffraction technique. This is the first step for elucidating the structure of the full troponin complex. PMID:9098903

  14. Production, crystallization and X-ray diffraction analysis of a complex between a fragment of the TssM T6SS protein and a camelid nanobody

    PubMed Central

    Nguyen, Van Son; Spinelli, Silvia; Desmyter, Aline; Le, Thi Thu Hang; Kellenberger, Christine; Cascales, Eric; Cambillau, Christian; Roussel, Alain

    2015-01-01

    The type VI secretion system (T6SS) is a machine evolved by Gram-negative bacteria to deliver toxin effectors into target bacterial or eukaryotic cells. The T6SS is functionally and structurally similar to the contractile tail of the Myoviridae family of bacteriophages and can be viewed as a syringe anchored to the bacterial membrane by a transenvelope complex. The membrane complex is composed of three proteins: the TssM and TssL inner membrane components and the TssJ outer membrane lipoprotein. The TssM protein is central as it interacts with both TssL and TssJ, therefore linking the membranes. Using controlled trypsinolysis, a 32.4 kDa C-terminal fragment of enteroaggregative Escherichia coli TssM (TssM32Ct) was purified. A nanobody obtained from llama immunization, nb25, exhibited subnanomolar affinity for TssM32Ct. Crystals of the TssM32Ct–nb25 complex were obtained and diffracted to 1.9 Å resolution. The crystals belonged to space group P64, with unit-cell parameters a = b = 95.23, c = 172.95 Å. Molecular replacement with a model nanobody indicated the presence of a dimer of TssM32Ct–nb25 in the asymmetric unit. PMID:25760699

  15. In silico protein fragmentation reveals the importance of critical nuclei on domain reassembly.

    PubMed

    Contreras Martínez, Lydia M; Borrero Quintana, Ernesto E; Escobedo, Fernando A; DeLisa, Matthew P

    2008-03-01

    Protein complementation assays (PCAs) based on split protein fragments have become powerful tools that facilitate the study and engineering of intracellular protein-protein interactions. These assays are based on the observation that a given protein can be split into two inactive fragments and these fragments can reassemble into the original properly folded and functional structure. However, one experimentally observed limitation of PCA systems is that the folding of a protein from its fragments is dramatically slower relative to that of the unsplit parent protein. This is due in part to a poor understanding of how PCA design parameters such as split site position in the primary sequence and size of the resulting fragments contribute to the efficiency of protein reassembly. We used a minimalist on-lattice model to analyze how the dynamics of the reassembly process for two model proteins was affected by the location of the split site. Our results demonstrate that the balanced distribution of the "folding nucleus," a subset of residues that are critical to the formation of the transition state leading to productive folding, between protein fragments is key to their reassembly.

  16. IMPACT fragmentation model developments

    NASA Astrophysics Data System (ADS)

    Sorge, Marlon E.; Mains, Deanna L.

    2016-09-01

    The IMPACT fragmentation model has been used by The Aerospace Corporation for more than 25 years to analyze orbital altitude explosions and hypervelocity collisions. The model is semi-empirical, combining mass, energy and momentum conservation laws with empirically derived relationships for fragment characteristics such as number, mass, area-to-mass ratio, and spreading velocity as well as event energy distribution. Model results are used for several types of analysis including assessment of short-term risks to satellites from orbital altitude fragmentations, prediction of the long-term evolution of the orbital debris environment and forensic assessments of breakup events. A new version of IMPACT, version 6, has been completed and incorporates a number of advancements enabled by a multi-year long effort to characterize more than 11,000 debris fragments from more than three dozen historical on-orbit breakup events. These events involved a wide range of causes, energies, and fragmenting objects. Special focus was placed on the explosion model, as the majority of events examined were explosions. Revisions were made to the mass distribution used for explosion events, increasing the number of smaller fragments generated. The algorithm for modeling upper stage large fragment generation was updated. A momentum conserving asymmetric spreading velocity distribution algorithm was implemented to better represent sub-catastrophic events. An approach was developed for modeling sub-catastrophic explosions, those where the majority of the parent object remains intact, based on estimated event energy. Finally, significant modifications were made to the area-to-mass ratio distribution to incorporate the tendencies of different materials to fragment into different shapes. This ability enabled better matches between the observed area-to-mass ratios and those generated by the model. It also opened up additional possibilities for post-event analysis of breakups. The paper will discuss

  17. Syntaxin 5 interacts with presenilin holoproteins, but not with their N- or C-terminal fragments, and affects β-amyloid peptide production

    PubMed Central

    2004-01-01

    Mutations in presenilins 1 and 2 (PS1 and PS2) account for the majority of cases of early-onset familial Alzheimer's disease. However, the trafficking and interaction of PSs with other proteins in the early secretory pathways are poorly understood. Using co-immunoprecipitation, we found that PS bound to Syx5 (syntaxin 5), which is a target-soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor involved in endoplasmic reticulum (ER)–Golgi vesicular transport in vivo. Syx5 interacted only with the full-length PS holoproteins and not with the naturally occurring N- or C-terminal fragments. The PS holoproteins co-immunoprecipitated with the mutant Syx5, which localized to the ER and Golgi compartments, despite the substitution of the transmembrane region with that of syntaxin 1A. In contrast, the transmembrane deletion mutant that localized to the cytosol, but not to the ER or Golgi compartments, did not co-immunoprecipitate the PS holoproteins. The PS1 variant linked to familial Alzheimer's disease (PS1ΔE9), lacking the region that contains the endoproteolytic cleavage site in the cytoplasmic loop, showed markedly decreased binding to Syx5. Immunofluorescence and sucrose-density-gradient fractionation analyses showed that the full-length PS holoproteins co-localized with Syx5 to the ER and cis-Golgi compartments. Furthermore, Syx5 overexpression resulted in the accumulation of PS holoproteins and the β-amyloid precursor protein, and reduced the secretion of the Aβ (amyloid β) peptide in COS-7 cells. In summary, these results indicate that Syx5 binds to full-length PSs and affects the processing and trafficking of β-amyloid precursor protein in the early secretory compartments. PMID:15109302

  18. Quantum control of molecular fragmentation in strong laser fields

    NASA Astrophysics Data System (ADS)

    Zohrabi, Mohammad

    Present advances in laser technology allow the production of ultrashort (<˜5 fs, approaching single cycle at 800 nm), intense tabletop laser pulses. At these high intensities laser-matter interactions cannot be described with perturbation theory since multiphoton processes are involved. This is in contrast to photodissociation by the absorption of a single photon, which is well described by perturbation theory. For example, at high intensities (<˜5x1013 W/cm2) the fragmentation of molecular hydrogen ions has been observed via the absorption of three or more photons. In another example, an intriguing dissociation mechanism has been observed where molecular hydrogen ions seem to fragment by apparently absorbing no photons. This is actually a two photon process, photoabsorption followed by stimulated emission, resulting in low energy fragments. We are interested in exploring these kinds of multiphoton processes. Our research group has studied the dynamics and control of fragmentation induced by strong laser fields in a variety of molecular targets. The main goal is to provide a basic understanding of fragmentation mechanisms and possible control schemes of benchmark systems such as H2+. This knowledge is further extended to more complex systems like the benchmark H3+ polyatomic and other molecules. In this dissertation, we report research based on two types of experiments. In the first part, we describe laser-induced fragmentation of molecular ion-beam targets. In the latter part, we discuss the formation of highly-excited neutral fragments from hydrogen molecules using ultrashort laser pulses. In carrying out these experiments, we have also extended experimental techniques beyond their previous capabilities. We have performed a few experiments to advance our understanding of laser-induced fragmentation of molecular-ion beams. For instance, we explored vibrationally resolved spectra of O2+ dissociation using various wavelengths. We observed a vibrational suppression

  19. Characterizing the forest fragmentation of Canada's national parks.

    PubMed

    Soverel, Nicholas O; Coops, Nicholas C; White, Joanne C; Wulder, Michael A

    2010-05-01

    Characterizing the amount and configuration of forests can provide insights into habitat quality, biodiversity, and land use. The establishment of protected areas can be a mechanism for maintaining large, contiguous areas of forests, and the loss and fragmentation of forest habitat is a potential threat to Canada's national park system. Using the Earth Observation for Sustainable Development of Forests (EOSD) land cover product (EOSD LC 2000), we characterize the circa 2000 forest patterns in 26 of Canada's national parks and compare these to forest patterns in the ecological units surrounding these parks, referred to as the greater park ecosystem (GPE). Five landscape pattern metrics were analyzed: number of forest patches, mean forest patch size (hectare), standard deviation of forest patch size (hectare), mean forest patch perimeter-to-area ratio (meters per hectare), and edge density of forest patches (meters per hectare). An assumption is often made that forests within park boundaries are less fragmented than the surrounding GPE, as indicated by fewer forest patches, a larger mean forest patch size, less variability in forest patch size, a lower perimeter-to-area ratio, and lower forest edge density. Of the 26 national parks we analyzed, 58% had significantly fewer patches, 46% had a significantly larger mean forest patch size (23% were not significantly different), and 46% had a significantly smaller standard deviation of forest patch size (31% were not significantly different), relative to their GPEs. For forest patch perimeter-to-area ratio and forest edge density, equal proportions of parks had values that were significantly larger or smaller than their respective GPEs and no clear trend emerged. In summary, all the national parks we analyzed, with the exception of the Georgian Bay Islands, were found to be significantly different from their corresponding GPE for at least one of the five metrics assessed, and 50% of the 26 parks were significantly

  20. Target fragmentation in radiobiology

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Cucinotta, Francis A.; Shinn, Judy L.; Townsend, Lawrence W.

    1993-01-01

    Nuclear reactions in biological systems produce low-energy fragments of the target nuclei seen as local high events of linear energy transfer (LET). A nuclear-reaction formalism is used to evaluate the nuclear-induced fields within biosystems and their effects within several biological models. On the basis of direct ionization interaction, one anticipates high-energy protons to have a quality factor and relative biological effectiveness (RBE) of unity. Target fragmentation contributions raise the effective quality factor of 10 GeV protons to 3.3 in reasonable agreement with RBE values for induced micronuclei in bean sprouts. Application of the Katz model indicates that the relative increase in RBE with decreasing exposure observed in cell survival experiments with 160 MeV protons is related solely to target fragmentation events. Target fragment contributions to lens opacity given an RBE of 1.4 for 2 GeV protons in agreement with the work of Lett and Cox. Predictions are made for the effective RBE for Harderian gland tumors induced by high-energy protons. An exposure model for lifetime cancer risk is derived from NCRP 98 risk tables, and protraction effects are examined for proton and helium ion exposures. The implications of dose rate enhancement effects on space radiation protection are considered.

  1. The Fragmentation of Learning.

    ERIC Educational Resources Information Center

    Downes, Stephen

    2001-01-01

    Information and communication technologies, especially the Internet, have vastly increased access to information and educational opportunities. Steadily increasing consumer demand is driving the development of online educational materials. The end result may be a "fragmentation" of learning involving multiple learning providers and delivery modes,…

  2. String Fragmentation Model in Space Radiation Problems

    NASA Technical Reports Server (NTRS)

    Tang, Alfred; Johnson, Eloise (Editor); Norbury, John W.; Tripathi, R. K.

    2002-01-01

    String fragmentation models such as the Lund Model fit experimental particle production cross sections very well in the high-energy limit. This paper gives an introduction of the massless relativistic string in the Lund Model and shows how it can be modified with a simple assumption to produce formulas for meson production cross sections for space radiation research. The results of the string model are compared with inclusive pion production data from proton-proton collision experiments.

  3. Microstructural characterization of pipe bomb fragments

    SciTech Connect

    Gregory, Otto; Oxley, Jimmie; Smith, James; Platek, Michael; Ghonem, Hamouda; Bernier, Evan; Downey, Markus; Cumminskey, Christopher

    2010-03-15

    Recovered pipe bomb fragments, exploded under controlled conditions, have been characterized using scanning electron microscopy, optical microscopy and microhardness. Specifically, this paper examines the microstructural changes in plain carbon-steel fragments collected after the controlled explosion of galvanized, schedule 40, continuously welded, steel pipes filled with various smokeless powders. A number of microstructural changes were observed in the recovered pipe fragments: deformation of the soft alpha-ferrite grains, deformation of pearlite colonies, twin formation, bands of distorted pearlite colonies, slip bands, and cross-slip bands. These microstructural changes were correlated with the relative energy of the smokeless powder fillers. The energy of the smokeless powder was reflected in a reduction in thickness of the pipe fragments (due to plastic strain prior to fracture) and an increase in microhardness. Moreover, within fragments from a single pipe, there was a radial variation in microhardness, with the microhardness at the outer wall being greater than that at the inner wall. These findings were consistent with the premise that, with the high energy fillers, extensive plastic deformation and wall thinning occurred prior to pipe fracture. Ultimately, the information collected from this investigation will be used to develop a database, where the fragment microstructure and microhardness will be correlated with type of explosive filler and bomb design. Some analyses, specifically wall thinning and microhardness, may aid in field characterization of explosive devices.

  4. Site-specific fab fragment biotinylation at the conserved nucleotide binding site for enhanced Ebola detection.

    PubMed

    Mustafaoglu, Nur; Alves, Nathan J; Bilgicer, Basar

    2015-07-01

    The nucleotide binding site (NBS) is a highly conserved region between the variable light and heavy chains at the Fab domains of all antibodies, and a small molecule that we identified, indole-3-butyric acid (IBA), binds specifically to this site. Fab fragment, with its small size and simple production methods compared to intact antibody, is good candidate for use in miniaturized diagnostic devices and targeted therapeutic applications. However, commonly used modification techniques are not well suited for Fab fragments as they are often more delicate than intact antibodies. Fab fragments are of particular interest for sensor surface functionalization but immobilization results in damage to the antigen binding site and greatly reduced activity due to their truncated size that allows only a small area that can bind to surfaces without impeding antigen binding. In this study, we describe an NBS-UV photocrosslinking functionalization method (UV-NBS(Biotin) in which a Fab fragment is site-specifically biotinylated with an IBA-EG11-Biotin linker via UV energy exposure (1 J/cm(2)) without affecting its antigen binding activity. This study demonstrates successful immobilization of biotinylated Ebola detecting Fab fragment (KZ52 Fab fragment) via the UV-NBS(Biotin) method yielding 1031-fold and 2-fold better antigen detection sensitivity compared to commonly used immobilization methods: direct physical adsorption and NHS-Biotin functionalization, respectively. Utilization of the UV-NBS(Biotin) method for site-specific conjugation to Fab fragment represents a proof of concept use of Fab fragment for various diagnostic and therapeutic applications with numerous fluorescent probes, affinity molecules and peptides.

  5. Radiation hardening and -embrittlement due to He production in F82H steel irradiated at 250 °C in JMTR

    NASA Astrophysics Data System (ADS)

    Wakai, E.; Jitsukawa, S.; Tomita, H.; Furuya, K.; Sato, M.; Oka, K.; Tanaka, T.; Takada, F.; Yamamoto, T.; Kato, Y.; Tayama, Y.; Shiba, K.; Ohnuki, S.

    2005-08-01

    The dependence of helium production on radiation hardening and -embrittlement has been examined in a reduced-activation martensitic F82H steel (8Cr-2W-0.2V-0.04Ta-0.1C) irradiated at 250 °C to 2.3 dpa. In this study, 10B and 11B-doped specimens were irradiated to minimize the errors from the effect of B on mechanical properties by comparing the results. The specimens used were 10B-doped, 10B + 11B-doped and 11B-doped F82H steels. The total amounts of doping boron were about 60 mass ppm. The range of helium concentration produced in the specimens was from about 5 to about 330 appm. Tensile and fracture toughness tests were performed after neutron irradiation. 50 MeV-He 2+ irradiation was also performed to implant about 85 appm He atoms at 120 °C by AVF cyclotron to 0.03 dpa, and small punch testing was performed to obtain ductile-to-brittle transition temperatures (DBTT). Radiation hardening of the neutron-irradiated specimens increased slightly with increasing helium production. The 100 MPa m 1/2 DBTT for the F82H + 11B, F82H + 10B + 11B, and F82H + 10B specimens were 40, 110, and 155 °C, respectively. The shifts of DBTT due to helium production were evaluated as about 70 °C by 190 appm He and 115 °C by 330 appm He. In cyclotron experiment using standard F82H, a similar DBTT shift due to He was measured. These results suggest that helium production can increase the DBTT.

  6. Dissociation of CH4 and CD4 by electron impact - Production of metastable and high-Rydberg hydrogen and carbon fragments

    NASA Technical Reports Server (NTRS)

    Finn, T. G.; Carnahan, B. L.; Wells, W. C.; Zipf, E. C.

    1975-01-01

    Production of hydrogen and carbon atoms in metastable and high-lying Rydberg states by electron-impact dissociation of methane and deuterated methane is investigated for incident electron energies ranging from threshold values to 300 eV. Threshold energies for five different processes resulting in metastable hydrogen and carbon atoms are determined in the energy range from 20 to 70 eV, and it is shown that metastable hydrogen atoms are produced in four of these collisional processes while metastable carbon atoms are produced in the other. The nature of each collisional process is described, differential cross sections are derived for the dissociative excitation of both types of atoms to metastable and high-Rydberg states at 100 eV, and the onset energy for UV photon production is measured. Much of the data is interpreted in terms of the ion core model suggested by Kupriyanov (1968) and developed by Freund (1971).

  7. Organic compounds present in airborne particles stimulate superoxide production and DNA fragmentation: role of NOX and xanthine oxidase in animal tissues.

    PubMed

    Busso, Iván Tavera; Silva, Guillermo Benjamín; Carreras, Hebe Alejandra

    2016-08-01

    Suspended particulate matter trigger the production of reactive oxygen species. However, most of the studies dealing with oxidative damage of airborne particles focus on the effects of individual compounds and not real mixtures. In order to study the enzymatic superoxide production resulting from the exposition to a complex mixture, we derived organic extracts from airborne particles collected daily in an urban area and exposed kidney, liver, and heart mammal tissues. After that, we measured DNA damage employing the comet assay. We observed that in every tissue, NADPH oxidase and xanthine oxidase were involved in O2 (-) production when they were exposed to the organic extracts, as the lucigenin's chemiluminescence decays when enzymes were inhibited. The same trend was observed with the percentage of cells with comets, since DNA damage was higher when they were exposed to same experimental conditions. Our data allow us to hypothesize that these enzymes play an important role in the oxidative stress produced by PAHs and that there is a mechanism involving them in the O2 (-)generation.

  8. Statistical models of brittle fragmentation

    NASA Astrophysics Data System (ADS)

    Åström, J. A.

    2006-06-01

    Recent developments in statistical models for fragmentation of brittle material are reviewed. The generic objective of these models is understanding the origin of the fragment size distributions (FSDs) that result from fracturing brittle material. Brittle fragmentation can be divided into two categories: (1) Instantaneous fragmentation for which breakup generations are not distinguishable and (2) continuous fragmentation for which generations of chronological fragment breakups can be identified. This categorization becomes obvious in mining industry applications where instantaneous fragmentation refers to blasting of rock and continuous fragmentation to the consequent crushing and grinding of the blasted rock fragments. A model of unstable cracks and crack-branch merging contains both of the FSDs usually related to instantaneous fragmentation: the scale invariant FSD with the power exponent (2-1/D) and the double exponential FSD which relates to Poisson process fragmentation. The FSDs commonly related to continuous fragmentation are: the lognormal FSD originating from uncorrelated breakup and the power-law FSD which can be modeled as a cascade of breakups. Various solutions to the generic rate equation of continuous fragmentation are briefly listed. Simulations of crushing experiments reveal that both cascade and uncorrelated fragmentations are possible, but that also a mechanism of maximizing packing density related to Apollonian packing may be relevant for slow compressive crushing.

  9. Assessment of Fragmentation Performance of Blast-enhanced Explosive Fragmentation Munitions

    DTIC Science & Technology

    2010-10-01

    aluminized blast-enhanced PAX-Al composition. The experimental assessment of the fragmentation performance of tested charges was accomplished using...charges, rapid expansion of high pressure detonation products results in high-strain high-strain-rate dilation of the hardened steel shell, which...eventually ruptures generating a “spray” of high-velocity steel fragments. Defining the longitudinal axis of the munition as the polar axis z, the

  10. Methods For Calculating Thyroid Doses to The Residents Of Ozersk Due to 131I Releases From The Stacks of The Mayak Production Association

    SciTech Connect

    Rovny, Sergey I.; Mokrov, Y.; Stukalov, Pavel M.; Beregich, D. A.; Teplyakov, I. I.; Anspaugh, L. R.; Napier, Bruce A.

    2009-10-23

    The Mayak Production Association (MPA) was established in the late 1940s in accordance with a special Decree of the USSR Government for the production of nuclear weapons. In early years of MPA operation, due to the lack of experience and absence of effective methods of RW management, the enterprise had extensive routine (designed) and non-routine (accidental) releases of gaseous radioactive wastes to the atmosphere. These practices resulted in additional technogenic radiation exposure of residents inhabiting populated areas near the MPA. The primary objective of ongoing studies under JCCRER Project 1.4 is to estimate doses to the residents of Ozersk due to releases of radioactive substances from the stacks of MPA. Preliminary scoping studies have demonstrated that releases of radioactive iodine (131I) from the stacks of the Mayak Radiochemical Plant represented the major contribution to the dose to residents of Ozersk and of other nearby populated areas. The behavior of 131I in the environment and of 131I migration through biological food chains (vegetation-cows-milk-humans) indicated a need for use of special mathematical models to perform the estimation of radiation doses to the population. The goal of this work is to select an appropriate model of the iodine migration in biological food chains and to justify numerical values of the model parameters.

  11. Fragmentation of Fractal Random Structures

    NASA Astrophysics Data System (ADS)

    Elçi, Eren Metin; Weigel, Martin; Fytas, Nikolaos G.

    2015-03-01

    We analyze the fragmentation behavior of random clusters on the lattice under a process where bonds between neighboring sites are successively broken. Modeling such structures by configurations of a generalized Potts or random-cluster model allows us to discuss a wide range of systems with fractal properties including trees as well as dense clusters. We present exact results for the densities of fragmenting edges and the distribution of fragment sizes for critical clusters in two dimensions. Dynamical fragmentation with a size cutoff leads to broad distributions of fragment sizes. The resulting power laws are shown to encode characteristic fingerprints of the fragmented objects.

  12. Research on the photoelectric measuring method of warhead fragment velocity

    NASA Astrophysics Data System (ADS)

    Liu, Ji; Yu, Lixia; Zhang, Bin; Liu, Xiaoyan

    2016-09-01

    The velocity of warhead fragment is the key criteria to determine its mutilation efficiency. But owing to the small size, larger quantity, irregular shape, high speed, arbitrary direction, large dispersion of warhead fragment and adverse environment, the test of fragment velocity parameter is very difficult. The paper designed an optoelectronic system to measure the average velocity of warhead fragments accurately. The apparatus included two parallel laser screens spaced apart at a known fixed distance for providing time measurement between start and stop signals. The large effective screen area was composed of laser source, retro-reflector and large area photo-diode. Whenever a moving fragment interrupted two optical screens, the system would generate a target signal. Due to partial obscuration of the incident energy and the poor test condition of the explosion, fragment target signal is easily disturbed. Therefore, fragments signal processing technology has become a key technology of the system. The noise of signal was reduced by employing wavelet decomposition and reconstruction. The time of fragment passing though the target was obtained by adopting peak detection algorithm. Based on the method of search peak in different width scale and waveform trend by using optima wavelet, the problem of rolling waveform was solved. Lots of fragments experiments of the different types of the warheads were conducted. Experimental results show that: warhead fragments capture rate of system is better than 98%, which can give velocity of each fragment in the density of less than 20 pieces per m2.

  13. Active immunization with a synthetic fragment of pig inhibin alpha-subunit increases ovulation rate and embryo production in superovulated ewes but season affects its efficiency.

    PubMed

    D'Alessandro, A; Martemucci, G; Iaffaldano, N

    1999-01-01

    Two experiments were designed to determine the effects of active immunization against one of two synthetic peptides from humans (inhibin-like peptide) or pigs (inhibin alpha-subunit) on antibody titres, ovulation rate and embryo production in ewes superovulated with 16 U ovine FSH. In Expt 1, during the breeding season, 30 ewes were subdivided into three groups: group I served as the non-immunized control; group II was immunized against inhibin-like peptide (100 micrograms inhibin-like peptide equivalent, followed by three booster injections); group III was immunized against pig inhibin alpha-subunit conjugated to human serum albumin (96 micrograms for the primary administration and 46 micrograms for the booster). In Expt 2, the efficiency of immunization against pig inhibin alpha-subunit on ovarian response and embryo production was evaluated during the non-breeding season in two groups of ewes (n = 12): group IV was a non-immunized control; Group V was immunized against pig inhibin alpha-subunit. During the breeding season, the ewes immunized against pig inhibin alpha-subunit showed higher antibody titres compared with the group immunized against inhibin-like peptide (P < 0.01) and a significant increase in ovulation rate (12.1) compared with both the control (5.0; P < 0.05) and the inhibin-like peptide-immunized group (3.1; P < 0.01). Immunization against pig inhibin alpha-subunit increased transferable embryo yield 4.5-fold (6.7 versus 1.5; P < 0.01) and improved embryo quality (94.6 versus 40.6%; P < 0.01). During the non-breeding season, immunization against pig inhibin alpha-subunit enhanced ovulation rate from 2.6 in the controls to 9.4 (P < 0.01) but did not affect transferable embryo production (3.9 versus 2.1; P > 0.05) and significantly lowered their quality (54.1 versus 100%; P < 0.01). In conclusion, active immunization against pig inhibin alpha-subunit can improve superovulatory response during the breeding season, while it appears to be unable to

  14. Production of thyrotropin receptor antibodies in acute phase of infectious mononucleosis due to Epstein-Barr virus primary infection: a case report of a child.

    PubMed

    Nagata, Keiko; Okuno, Keisuke; Ochi, Marika; Kumata, Keisuke; Sano, Hitoshi; Yoneda, Naohiro; Ueyama, Jun-Ichi; Matsushita, Michiko; Kuwamoto, Satoshi; Kato, Masako; Murakami, Ichiro; Kanzaki, Susumu; Hayashi, Kazuhiko

    2015-01-01

    Various autoantibodies have been reported to be detected during the progression of infectious mononucleosis. We observed a case of infectious mononucleosis due to Epstein-Barr virus primary infection for 2 months, and noticed the transiently increased titer of thyrotropin receptor autoantibodies detected at the acute phase on the 3rd day after admission. At that time, real-time quantitative PCR also revealed the mRNA expressions of an immediate early lytic gene, BZLF1, and a latent gene, EBNA2. The expression of BZLF1 mRNA means that Epstein-Barr virus infects lytically, and EBNA2 protein has an important role in antibody production as well as the establishment of Epstein-Barr virus latency. These results suggest that Epstein-Barr virus lytic infection is relevant to thyrotropin receptor autoantibody production. Thyrotropin receptor autoantibodies stimulate thyroid follicular cells to produce excessive thyroid hormones and cause Graves' disease. Recently, we reported the thyrotropin receptor autoantibody production from thyrotropin receptor autoantibody-predisposed Epstein-Barr virus-infected B cells by the induction of Epstein-Barr virus lytic infection in vitro. This case showed in vivo findings consistent with our previous reports, and is important to consider the pathophysiology of Graves' disease and one of the mechanisms of autoimmunity.

  15. Heterologous production, isolation, characterization and crystallization of a soluble fragment of the NADH:ubiquinone oxidoreductase (complex I) from Aquifex aeolicus.

    PubMed

    Kohlstädt, Markus; Dörner, Katerina; Labatzke, Ramona; Koç, Cengiz; Heilscher, Ruth; Schiltz, Emile; Einsle, Oliver; Hellwig, Petra; Friedrich, Thorsten

    2008-12-09

    The proton-pumping NADH:ubiquinone oxidoreductase (complex I) is the first enzyme complex of the respiratory chains in many bacteria and most eukaryotes. It is the least understood of all, due to its enormous size and unique energy conversion mechanism. The bacterial complex is in general made up of 14 different subunits named NuoA-N. Subunits NuoE, -F, and -G comprise the electron input part of the complex. We have cloned these genes from the hyperthermophilic bacterium Aquifex aeolicus and expressed them heterologously in Escherichia coli. A soluble subcomplex made up of NuoE and NuoF and containing the NADH binding site, the primary electron acceptor flavin mononucleotide (FMN), the binuclear iron-sulfur cluster N1a, and the tetranuclear iron-sulfur cluster N3 was isolated by chromatographic methods. The proteins were identified by N-terminal sequencing and mass spectrometry; the cofactors were characterized by UV/vis and EPR spectroscopy. Subunit NuoG was not produced in this strain. The preparation was thermostable and exhibited maximum NADH/ferricyanide oxidoreductase activity at 85 degrees C. Analytical size-exclusion chromatography and dynamic light scattering revealed the homogeneity of the preparation. First attempts to crystallize the preparation led to crystals diffracting more than 2 A.

  16. Caprine and ovine Greek dairy products: The official German method generates false-positive results due to κ-casein gene polymorphism.

    PubMed

    Tsartsianidou, V; Triantafillidou, D; Karaiskou, N; Tarantili, P; Triantafillidis, G; Georgakis, E; Triantafyllidis, A

    2017-03-16

    Caseins are widely used for species identification of dairy products. Isoelectric focusing (IEF) of para-κ-casein peptide is used as the official German method for the differentiation between caprine (isoform A) and ovine (isoform B) dairy products, based on their different isoelectric points. The discrimination between Greek goat and ewe dairy products using IEF has, however, been shown to be problematic because of the existence of the ewe isoform in milk from Greek indigenous dairy goats. This could be due to nucleotide polymorphisms within the goat κ-casein gene of Greek indigenous breeds, which alter the isoelectric point of the para-κ-casein peptide and lead to false positive results. Previous DNA analysis of the goat κ-casein gene has shown high levels of polymorphism; however, no such information is available for Greek indigenous dairy goats. Therefore, 87 indigenous dairy goats were sequenced at exon IV of κ-casein gene. In total, 9 polymorphic sites were detected. Three nonsynonymous point mutations were identified, which change the isoelectric point of the goat para-κ-casein peptide so that it appears identical to that of the ewe peptide. Ten composite genotypes were reconstructed and 6 of them included the problematic point mutations. For the verification of genetic results, IEF was carried out. Both goat and ewe patterns appeared in the problematic genotypes. The frequency of these genotypes could be characterized as moderate (0.23) to high (0.60) within Greek indigenous breeds. However, this is not an issue restricted to Greece, as such genotypes have been detected in various non-Greek goat breeds. In conclusion, IEF based on the official German method is certainly inappropriate for ovine and caprine discrimination concerning Greek dairy goat products, and consequently a new method should be established.

  17. Parton Propagation and Fragmentation in QCD Matter

    SciTech Connect

    Alberto Accardi, Francois Arleo, William Brooks, David D'Enterria, Valeria Muccifora

    2009-12-01

    We review recent progress in the study of parton propagation, interaction and fragmentation in both cold and hot strongly interacting matter. Experimental highlights on high-energy hadron production in deep inelastic lepton-nucleus scattering, proton-nucleus and heavy-ion collisions, as well as Drell-Yan processes in hadron-nucleus collisions are presented. The existing theoretical frameworks for describing the in-medium interaction of energetic partons and the space-time evolution of their fragmentation into hadrons are discussed and confronted to experimental data. We conclude with a list of theoretical and experimental open issues, and a brief description of future relevant experiments and facilities.

  18. Computer Model Of Fragmentation Of Atomic Nuclei

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Townsend, Lawrence W.; Tripathi, Ram K.; Norbury, John W.; KHAN FERDOUS; Badavi, Francis F.

    1995-01-01

    High Charge and Energy Semiempirical Nuclear Fragmentation Model (HZEFRG1) computer program developed to be computationally efficient, user-friendly, physics-based program for generating data bases on fragmentation of atomic nuclei. Data bases generated used in calculations pertaining to such radiation-transport applications as shielding against radiation in outer space, radiation dosimetry in outer space, cancer therapy in laboratories with beams of heavy ions, and simulation studies for designing detectors for experiments in nuclear physics. Provides cross sections for production of individual elements and isotopes in breakups of high-energy heavy ions by combined nuclear and Coulomb fields of interacting nuclei. Written in ANSI FORTRAN 77.

  19. Micromachined fragment capturer for biomedical applications.

    PubMed

    Choi, Young-Soo; Lee, Dong-Weon

    2011-11-01

    Due to changes in modern diet, a form of heart disease called chronic total occlusion has become a serious disease to be treated as an emergency. In this study, we propose a micromachined capturer that is designed and fabricated to collect plaque fragments generated during surgery to remove the thrombus. The fragment capturer consists of a plastic body made by rapid prototyping, SU-8 mesh structures using MEMS techniques, and ionic polymer metal composite (IPMC) actuators. An array of IPMC actuators combined with the SU-8 net structure was optimized to effectively collect plaque fragments. The evaporation of solvent through the actuator's surface was prevented using a coating of SU-8 and polydimethylsiloxane thin film on the actuator. This approach improved the available operating time of the IPMC, which primarily depends on solvent loss. Our preliminary results demonstrate the possibility of using the capturer for biomedical applications.

  20. Micromachined fragment capturer for biomedical applications

    NASA Astrophysics Data System (ADS)

    Choi, Young-Soo; Lee, Dong-Weon

    2011-11-01

    Due to changes in modern diet, a form of heart disease called chronic total occlusion has become a serious disease to be treated as an emergency. In this study, we propose a micromachined capturer that is designed and fabricated to collect plaque fragments generated during surgery to remove the thrombus. The fragment capturer consists of a plastic body made by rapid prototyping, SU-8 mesh structures using MEMS techniques, and ionic polymer metal composite (IPMC) actuators. An array of IPMC actuators combined with the SU-8 net structure was optimized to effectively collect plaque fragments. The evaporation of solvent through the actuator's surface was prevented using a coating of SU-8 and polydimethylsiloxane thin film on the actuator. This approach improved the available operating time of the IPMC, which primarily depends on solvent loss. Our preliminary results demonstrate the possibility of using the capturer for biomedical applications.

  1. Fragmentation of Kozai–Lidov Disks

    NASA Astrophysics Data System (ADS)

    Fu, Wen; Lubow, Stephen H.; Martin, Rebecca G.

    2017-02-01

    We analyze the gravitational instability (GI) of a locally isothermal inclined disk around one component of a binary system. Such a disk can undergo global Kozai–Lidov (KL) cycles if the initial disk tilt is above the critical KL angle (of about 40◦). During these cycles, an initially circular disk exchanges its inclination for eccentricity, and vice versa. Self-gravity may suppress the cycles under some circumstances. However, with hydrodynamic simulations that include self-gravity, we show that for a sufficiently high initial disk tilts and for certain disk masses, disks can undergo KL oscillations and fragment due to GI, even when the Toomre Q value for an equivalent undisturbed disk is well within the stable regime (Q> 2). We suggest that KL triggered disk fragmentation provides a mechanism for the efficient formation of giant planets in binary systems and may enhance the fragmentation of disks in massive black hole binaries.

  2. History of on-orbit satellite fragmentations

    NASA Technical Reports Server (NTRS)

    Nauer, David J.

    1992-01-01

    Since the first serious satellite fragmentation occurred in Jun. 1961, and instantaneously increased the total Earth satellite population by more than 400 percent, the issue of space operations within the finite region of space around the Earth has been the subject of increasing interest and concern. The prolific satellite fragmentations of the 1970's and the marked increase in the number of fragmentations in the 1980's served to widen international research into the characteristics and consequences of such events. Plans for large, manned space stations in the next decade and beyond demand a better understanding of the hazards of the dynamic Earth satellite population. The contribution of satellite fragmentations to the growth of the Earth satellite population is complex and varied. The majority of detectable fragmentation debris have already fallen out of orbit, and the effects of 40 percent of all fragmentations have completely disappeared. In this volume, satellite fragmentations are categorized by their assessed nature and to a lesser degree by their effect on the near-Earth space environment. A satellite breakup is the usually destructive disassociation of an orbital payload, rocket body, or structure, often with a wide range of ejecta velocities. A satellite breakup may be accidental or the result of intentional actions, e.g., due to a propulsion system malfunction or a space weapons test, respectively. An anomalous event is the unplanned separation, usually at low velocity, of one or more detectable objects from a satellite which remains essentially intact. Anomalous events can be caused by material deterioration of items such as thermal blankets, protective shields, or solar panels. As a general rule, a satellite breakup will produce considerably more debris, both trackable and non-trackable, than an anomalous event. From one perspective, satellite breakups may be viewed as a measure of the effects of man's activity on the environment, while anomalous

  3. Small global effect on terrestrial net primary production due to increased fossil fuel aerosol emissions from East Asia since the turn of the century.

    PubMed

    O'Sullivan, M; Rap, A; Reddington, C L; Spracklen, D V; Gloor, M; Buermann, W

    2016-08-16

    The global terrestrial carbon sink has increased since the start of this century at a time of growing carbon emissions from fossil fuel burning. Here we test the hypothesis that increases in atmospheric aerosols from fossil fuel burning enhanced the diffuse light fraction and the efficiency of plant carbon uptake. Using a combination of models, we estimate that at global scale changes in light regimes from fossil fuel aerosol emissions had only a small negative effect on the increase in terrestrial net primary production over the period 1998-2010. Hereby, the substantial increases in fossil fuel aerosol emissions and plant carbon uptake over East Asia were effectively canceled by opposing trends across Europe and North America. This suggests that if the recent increase in the land carbon sink would be causally linked to fossil fuel emissions, it is unlikely via the effect of aerosols but due to other factors such as nitrogen deposition or nitrogen-carbon interactions.

  4. Small global effect on terrestrial net primary production due to increased fossil fuel aerosol emissions from East Asia since the turn of the century

    NASA Astrophysics Data System (ADS)

    O'Sullivan, M.; Rap, A.; Reddington, C. L.; Spracklen, D. V.; Gloor, M.; Buermann, W.

    2016-08-01

    The global terrestrial carbon sink has increased since the start of this century at a time of growing carbon emissions from fossil fuel burning. Here we test the hypothesis that increases in atmospheric aerosols from fossil fuel burning enhanced the diffuse light fraction and the efficiency of plant carbon uptake. Using a combination of models, we estimate that at global scale changes in light regimes from fossil fuel aerosol emissions had only a small negative effect on the increase in terrestrial net primary production over the period 1998-2010. Hereby, the substantial increases in fossil fuel aerosol emissions and plant carbon uptake over East Asia were effectively canceled by opposing trends across Europe and North America. This suggests that if the recent increase in the land carbon sink would be causally linked to fossil fuel emissions, it is unlikely via the effect of aerosols but due to other factors such as nitrogen deposition or nitrogen-carbon interactions.

  5. Small global effect on terrestrial net primary production due to increased fossil fuel aerosol emissions from East Asia since the turn of the century

    PubMed Central

    Rap, A.; Reddington, C. L.; Spracklen, D. V.; Gloor, M.; Buermann, W.

    2016-01-01

    Abstract The global terrestrial carbon sink has increased since the start of this century at a time of growing carbon emissions from fossil fuel burning. Here we test the hypothesis that increases in atmospheric aerosols from fossil fuel burning enhanced the diffuse light fraction and the efficiency of plant carbon uptake. Using a combination of models, we estimate that at global scale changes in light regimes from fossil fuel aerosol emissions had only a small negative effect on the increase in terrestrial net primary production over the period 1998–2010. Hereby, the substantial increases in fossil fuel aerosol emissions and plant carbon uptake over East Asia were effectively canceled by opposing trends across Europe and North America. This suggests that if the recent increase in the land carbon sink would be causally linked to fossil fuel emissions, it is unlikely via the effect of aerosols but due to other factors such as nitrogen deposition or nitrogen‐carbon interactions. PMID:27773953

  6. Modelling of the Pele Fragmentation Dynamics

    NASA Astrophysics Data System (ADS)

    Verreault, Jimmy

    2013-06-01

    The Penetrator with Enhanced Lateral Effect (PELE) is a type of explosive-free projectile that undergoes radial fragmentation upon an impact with a target plate. This type of projectile is composed of a brittle cylindrical shell (the jacket) filled in its core with a material characterized with a large Poisson's ratio. Upon an impact with a target, the axial compression causes the filling to expand in the radial direction. However, due to the brittleness of the jacket material, very little radial deformation can occur which creates a radial stress between the two materials and a hoop stress in the jacket. Fragmentation of the jacket occurs if the hoop stress exceeds the material's ultimate stress. The PELE fragmentation dynamics is explored via Finite-Element Method (FEM) simulations using the AUTODYN explicit dynamics hydrocode. The numerical results are compared with an analytical model based on wave interactions, as well as with the experimental investigation of Paulus and Schirm (1996). The comparison is based on the mechanical stress in the filling, the resulting radial velocity of the fragments, the number of fragments generated and their mass distribution.

  7. Emission angle dependence of fission fragment spin: Effects of single particle spin and tilting mode

    NASA Astrophysics Data System (ADS)

    Datta, T.; Naik, H.; Dange, S. P.

    1995-06-01

    The high-spin yield fraction (HSF) for the fission product 132Im,g has been measured as a function of fragment emission angle (90° >=Θ>=10°) in the 237Np(α29 MeV,f) system. It was seen that the HSF for 132I or corresponding fragment (~=134I) spin initially decreases as emission angle decreases from 90° to ~=45° and then steadily increases at lower angles (Θ<45°). Contrary to the present observation in odd-Z 241Am fission, earlier we had observed that fragment spin continuously decreases to a limit with decrease in emission angle from 90° to 20° in even-even 242Pu fission. These data have been analyzed in the framework of the collective mode model invoking the effect of single particle spin. It is seen that for an odd-Z or A fissioning nucleus, angular variation of fragment spin could be accounted for on the basis of coupling between the odd nucleon spin (j>=k~=4ħ) projections and spin due to the collective rotational (tilting) degrees. Collective rotational degrees govern fragment spin for even-even fissioning nucleus.

  8. Transversity from two pion interference fragmentation

    SciTech Connect

    She Jun; Huang Yang; Barone, Vincenzo; Ma Boqiang

    2008-01-01

    We present calculation on the azimuthal spin asymmetries for pion pair production in semi-inclusive deep inelastic scattering (SIDIS) process at both HERMES and COMPASS kinematics, with transversely polarized proton, deuteron, and neutron targets. We calculate the asymmetry by adopting a set of parametrization of the interference fragmentation functions and two different models for the transversity. We find that the result for the proton target is insensitive to the approaches of the transversity but more helpful to understand the interference fragmentation functions. However, for the neutron target, which can be obtained through using deuteron and {sup 3}He targets, we find different predictions for different approaches to the transversity. Thus probing the two pion interference fragmentation from the neutron can provide us more interesting information on the transversity.

  9. Gas-Phase Fragmentation Analysis of Nitro-Fatty Acids

    PubMed Central

    Bonacci, Gustavo; Asciutto, Eliana K.; Woodcock, Steven R.; Salvatore, Sonia R.; Freeman, Bruce A.; Schopfer, Francisco J.

    2012-01-01

    Nitro-fatty acids are electrophilic signaling mediators formed in increased amounts during inflammation by nitric oxide and nitrite-dependent redox reactions. A more rigorous characterization of endogenously-generated species requires additional understanding of their gas-phase induced fragmentation. Thus, collision induced dissociation (CID) of nitroalkane and nitroalkene groups in fatty acids were studied in the negative ion mode to provide mass spectrometric tools for their structural characterization. Fragmentation of nitroalkanes occurred mainly through loss of the NO2− anion or neutral loss of HNO2. The CID of nitroalkenes proceeds via a more complex cyclization, followed by fragmentation to nitrile and aldehyde products. Gas-phase fragmentation of nitroalkene functional groups with additional γ or δ unsaturation occurred through a multiple step cyclization reaction process, leading to 5 and 6 member ring heterocyclic products and carbon chain fragmentation. Cyclization products were not obtained during nitroalkane fragmentation, highlighting the role of double bond π electrons during NO2− rearrangements, stabilization and heterocycle formation. The proposed structures, mechanisms and products of fragmentation are supported by analysis of 13C and 15N labeled parent molecules, 6 different nitroalkene positional isomers, 6 nitroalkane positional isomers, accurate mass determinations at high resolution and quantum mechanics calculations. Multiple key diagnostic ion fragments were obtained through this analysis, allowing for the precise placement of double bonds and sites of fatty acid nitration, thus supporting an ability to predict nitro positions in biological samples. PMID:21953257

  10. Hospital Acquired Pneumonia Due to Achromobacter spp. in a Geriatric Ward in China: Clinical Characteristic, Genome Variability, Biofilm Production, Antibiotic Resistance and Integron in Isolated Strains

    PubMed Central

    Liu, Chao; Pan, Fei; Guo, Jun; Yan, Weifeng; Jin, Yi; Liu, Changting; Qin, Long; Fang, Xiangqun

    2016-01-01

    Background: Hospital-acquired pneumonia (HAP) due to Achromobacter has become a substantial concern in recent years. However, HAP due to Achromobacter in the elderly is rare. Methods: A retrospective analysis was performed on 15 elderly patients with HAP due to Achromobacter spp., in which the sequence types (STs), integrons, biofilm production and antibiotic resistance of the Achromobacter spp. were examined. Results: The mean age of the 15 elderly patients was 88.8 ± 5.4 years. All patients had at least three underlying diseases and catheters. Clinical outcomes improved in 10 of the 15 patients after antibiotic and/or mechanical ventilation treatment, but three patients had chronic infections lasting more than 1 year. The mortality rate was 33.3% (5/15). All strains were resistant to aminoglycosides, aztreonam, nitrofurantoin, and third- and fourth-generation cephalosporins (except ceftazidime and cefoperazone). Six new STs were detected. The most frequent ST was ST306. ST5 was identified in two separate buildings of the hospital. ST313 showed higher MIC in cephalosporins, quinolones and carbapenems, which should be more closely considered in clinical practice. All strains produced biofilm and had integron I and blaOXA-114-like. The main type was blaOXA-114q. The variable region of integron I was different among strains, and the resistance gene of the aminoglycosides was most commonly inserted in integron I. Additionally, blaPSE-1 was first reported in this isolate. Conclusion: Achromobacter spp. infection often occurs in severely ill elders with underlying diseases. The variable region of integrons differs, suggesting that Achromobacter spp. is a reservoir of various resistance genes. PMID:27242678

  11. Heterogeneous fragmentation of metallic liquid microsheet with high velocity gradient

    NASA Astrophysics Data System (ADS)

    An-Min, He; Pei, Wang; Jian-Li, Shao

    2016-01-01

    Large-scale molecular dynamics simulations are performed to study the fragmentation of metallic liquid sheets with high velocity gradient. Dynamic fragmentation of the system involves the formation of a network of fragments due to the growth and coalescence of holes, decomposition of the network into filaments, and further breakup of the filaments into spherical clusters. The final size distribution of the fragmented clusters in the large volume limit is found to obey a bilinear exponential form, which is resulted from the heterogeneous breakup of quasi-cylindrical filaments. The main factors contributing to fragmentation heterogeneity are introduced, including strain rate inhomogeneity and matter distribution nonuniformity of fragments produced during decomposition of the network structure. Project supported by the Science and Technology Development Foundation of China Academy of Engineering Physics (Grant Nos. 2013A0201010 and 2015B0201039) and the National Natural Science Foundation of China (Grant No. 11402032).

  12. New Scalings in Nuclear Fragmentation

    SciTech Connect

    Bonnet, E.; Bougault, R.; Galichet, E.; Gagnon-Moisan, F.; Guinet, D.; Lautesse, P.; Marini, P.; Parlog, M.

    2010-10-01

    Fragment partitions of fragmenting hot nuclei produced in central and semiperipheral collisions have been compared in the excitation energy region 4-10 MeV per nucleon where radial collective expansion takes place. It is shown that, for a given total excitation energy per nucleon, the amount of radial collective energy fixes the mean fragment multiplicity. It is also shown that, at a given total excitation energy per nucleon, the different properties of fragment partitions are completely determined by the reduced fragment multiplicity (i.e., normalized to the source size). Freeze-out volumes seem to play a role in the scalings observed.

  13. Photoelectrical properties of indandione fragment containing azobenzene compounds

    NASA Astrophysics Data System (ADS)

    Latvels, Janis; Grzibovskis, Raitis; Pudzs, Kaspars; Vembris, Aivars; Blumberga, Dagnija

    2014-05-01

    Organic materials are becoming more popular due to their potential application in electronics. Low molecular weight materials possible produce from solution are in special consideration. It gives the possibility to avoid both thermal evaporation in vacuum, and use of polymers in thin film preparation process. Indandione fragment containing azobenzene compounds are one of such materials. These compounds are good candidates for use in design of novel molecular electronic devices due to their possibility to form amorphous structure from solution thus allowing developing flexible, small size systems with low production costs. In this work three indandione fragment containing azobenzene compounds were investigated. Difference between these compounds is bulky groups which assist formation of amorphous thin film. Absorption spectra of the investigated compounds are similar to P3HT but with higher absorption coefficient. Molecule ionization and electron affinity levels of these compounds are around -5.45eV and -3.80eV, respectively. Combining PCBM with investigated compounds could lead to difference between electron affinity levels maximum of 0.15eV. It is several times less compared to ~1eV for P3HT:PCBM system. Higher difference between the donor ionization level and the acceptor affinity level could also be obtained which should lead to the higher open circuit voltage.

  14. Fragmentation of random trees

    NASA Astrophysics Data System (ADS)

    Kalay, Z.; Ben-Naim, E.

    2015-01-01

    We study fragmentation of a random recursive tree into a forest by repeated removal of nodes. The initial tree consists of N nodes and it is generated by sequential addition of nodes with each new node attaching to a randomly-selected existing node. As nodes are removed from the tree, one at a time, the tree dissolves into an ensemble of separate trees, namely, a forest. We study statistical properties of trees and nodes in this heterogeneous forest, and find that the fraction of remaining nodes m characterizes the system in the limit N\\to ∞ . We obtain analytically the size density {{φ }s} of trees of size s. The size density has power-law tail {{φ }s}˜ {{s}-α } with exponent α =1+\\frac{1}{m}. Therefore, the tail becomes steeper as further nodes are removed, and the fragmentation process is unusual in that exponent α increases continuously with time. We also extend our analysis to the case where nodes are added as well as removed, and obtain the asymptotic size density for growing trees.

  15. Fragmentation of random trees

    NASA Astrophysics Data System (ADS)

    Kalay, Ziya; Ben-Naim, Eli

    2015-03-01

    We investigate the fragmentation of a random recursive tree by repeated removal of nodes, resulting in a forest of disjoint trees. The initial tree is generated by sequentially attaching new nodes to randomly chosen existing nodes until the tree contains N nodes. As nodes are removed, one at a time, the tree dissolves into an ensemble of separate trees, namely a forest. We study the statistical properties of trees and nodes in this heterogeneous forest. In the limit N --> ∞ , we find that the system is characterized by a single parameter: the fraction of remaining nodes m. We obtain analytically the size density ϕs of trees of size s, which has a power-law tail ϕs ~s-α , with exponent α = 1 + 1 / m . Therefore, the tail becomes steeper as further nodes are removed, producing an unusual scaling exponent that increases continuously with time. Furthermore, we investigate the fragment size distribution in a growing tree, where nodes are added as well as removed, and find that the distribution for this case is much narrower.

  16. CATABOLIC ORIGIN OF A BENCE JONES PROTEIN FRAGMENT

    PubMed Central

    Cioli, D.; Baglioni, C.

    1968-01-01

    Gel filtration analysis of the urinary proteins of some patients with myeloma has shown the presence of "fragments" of Bence Jones proteins which correspond to the variable half of these proteins. Experiments have been carried out to establish the origin of a "fragment" observed in a patient who excreted a large amount of this protein. Labeled homologous Bence Jones protein has been injected into this and other control patients. Excretion of labeled "fragment" has been observed in all. Analysis by peptide mapping and radio-autography of this labeled "fragment" isolated from the urine showed that the invariable half of the Bence Jones protein was not excreted; it seemed thus likely that the invariable half was metabolized to small peptides and free amino acids. A labeled Bence Jones protein which was excreted without any accompanying "fragment" was injected into the patient who excreted large amounts of "fragment." No excretion of labeled "fragment" was observed. It was thus concluded that the property of being degraded to "fragment" is characteristic of some "fragile" Bence Jones proteins and is not determined by the patient. Incubation with serum or urine of the "fragile" Bence Jones protein failed to produce any "fragment." "Fragments" of Bence Jones proteins are thus most likely formed during excretion of these proteins through the kidney and are products of the catabolism of Bence Jones proteins. PMID:5666962

  17. Fragment size does not matter when you are well connected: effects of fragmentation on fitness of coexisting gypsophiles.

    PubMed

    Matesanz, S; Gómez-Fernández, A; Alcocer, I; Escudero, A

    2015-09-01

    Most habitat fragmentation studies have focused on the effects of population size on reproductive success of single species, but studies assessing the effects of both fragment size and connectivity, and their interaction, on several coexisting species are rare. In this study, we selected 20 fragments along two continuous gradients of size and degree of isolation in a gypsum landscape in central Spain. In each fragment, we selected 15 individuals of each of three dominant gypsophiles (Centaurea hyssopifolia, Lepidium subulatum and Helianthemum squamatum, 300 plants per species, 900 plants in total) and measured several reproductive traits: inflorescence number, fruit set, seed set and seed mass. We hypothesised that plant fitness would be lower on small and isolated fragments due to an interaction between fragment size and connectivity, and that response patterns would be species-specific. Overall, fragment size had very little effect on reproductive traits compared to that of connectivity. We observed a positive effect of fragment connectivity on C. hyssopifolia fitness, mediated by the increased seed predation in plants from isolated fragments, resulting in fewer viable seeds per capitulum and lower seed set. Furthermore, seed mass was lower in plants from isolated fragments for both C. hyssopifolia and L. subulatum. In contrast, few reproductive traits of H. squamatum were affected by habitat fragmentation. We discuss the implications of species-specific responses to habitat fragmentation for the dynamics and conservation of gypsum plant communities. Our results highlight the complex interplay among plants and their mutualistic and antagonistic visitors, and reinforce the often-neglected role of habitat connectivity as a key component of the fragmentation process.

  18. The Largest Fragment of a Homogeneous Fragmentation Process

    NASA Astrophysics Data System (ADS)

    Kyprianou, Andreas; Lane, Francis; Mörters, Peter

    2017-03-01

    We show that in homogeneous fragmentation processes the largest fragment at time t has size e^{-t Φ '(overline{p})}t^{-3/2 (log Φ )'(overline{p})+o(1)}, where Φ is the Lévy exponent of the fragmentation process, and overline{p} is the unique solution of the equation (log Φ )'(bar{p})=1/1+bar{p}. We argue that this result is in line with predictions arising from the classification of homogeneous fragmentation processes as logarithmically correlated random fields.

  19. Human health risk assessment of pharmaceuticals and personal care products in plant tissue due to biosolids and manure amendments, and wastewater irrigation.

    PubMed

    Prosser, R S; Sibley, P K

    2015-02-01

    Amending soil with biosolids or livestock manure provides essential nutrients in agriculture. Irrigation with wastewater allows for agriculture in regions where water resources are limited. However, biosolids, manure and wastewater have all been shown to contain pharmaceuticals and personal care products (PPCPs). Studies have shown that PPCPs can accumulate in the tissues of plants but the risk that accumulated residues may pose to humans via consumption of edible portions is not well documented. This study reviewed the literature for studies that reported residues of PPCPs in the edible tissue of plants grown in biosolids- or manure-amended soils or irrigated with wastewater. These residues were used to determine the estimated daily intake of PPCPs for an adult and toddler. Estimated daily intake values were compared to acceptable daily intakes to determine whether PPCPs in plant tissue pose a hazard to human health. For all three amendment practices, the majority of reported residues resulted in hazard quotients <0.1. Amendment with biosolids or manure resulted in hazard quotients ≥0.1 for carbamazepine, diphenhydramine, salbutamol, triclosan, and sulfamethazine. Irrigation with wastewater resulted in hazard quotients of ≥0.1 for ambrettolid, carbamazepine, diclofenac, flunixin, lamotrigine, metoprolol, naproxen, sildenafil and tonalide. [corrected]. Many of the residues that resulted in hazard quotients ≥0.1 were due to exposing plants to concentrations of PPCPs that would not be considered relevant based on concentrations reported in biosolids and manure or unrealistic methods of exposure, which lead to artificially elevated plant residues. Our assessment indicates that the majority of individual PPCPs in the edible tissue of plants due to biosolids or manure amendment or wastewater irrigation represent a de minimis risk to human health. Assuming additivity, the mixture of PPCPs could potentially present a hazard. Further work needs to be done to assess

  20. Relativistic correction to gluon fragmentation function into pseudoscalar quarkonium

    NASA Astrophysics Data System (ADS)

    Gao, Xiangrui; Jia, Yu; Li, Liuji; Xiong, Xiaonu

    2017-02-01

    Inspired by the recent measurements of the ηc meson production at LHC experiments, we investigate the relativistic correction effect for the fragmentation functions of gluon/charm quark fragmenting into ηc, which constitute the crucial nonperturbative element for the ηc production at high p T. Employing three distinct methods, we calculate the next-to-leading-order (NLO) relativistic correction to g → ηc fragmentation function in the NRQCD factorization framework, as well as verifying the existing NLO result for the c → ηc fragmentation function. We also study the evolution behavior of these fragmentation functions with the aid of the DGLAP equation. Supported by National Natural Science Foundation of China (11475188, 11261130311, 11575202, 11222549), IHEP Innovation (Y4545170Y2), State Key Lab for Electronics and Particle Detectors

  1. Chitosan nanofiber scaffold improves bone healing via stimulating trabecular bone production due to upregulation of the Runx2/osteocalcin/alkaline phosphatase signaling pathway.

    PubMed

    Ho, Ming-Hua; Yao, Chih-Jung; Liao, Mei-Hsiu; Lin, Pei-I; Liu, Shing-Hwa; Chen, Ruei-Ming

    2015-01-01

    Osteoblasts play critical roles in bone formation. Our previous study showed that chitosan nanofibers can stimulate osteoblast proliferation and maturation. This translational study used an animal model of bone defects to evaluate the effects of chitosan nanofiber scaffolds on bone healing and the possible mechanisms. In this study, we produced uniform chitosan nanofibers with fiber diameters of approximately 200 nm. A bone defect was surgically created in the proximal femurs of male C57LB/6 mice, and then the left femur was implanted with chitosan nanofiber scaffolds for 21 days and compared with the right femur, which served as a control. Histological analyses revealed that implantation of chitosan nanofiber scaffolds did not lead to hepatotoxicity or nephrotoxicity. Instead, imaging analyses by X-ray transmission and microcomputed tomography showed that implantation of chitosan nanofiber scaffolds improved bone healing compared with the control group. In parallel, microcomputed tomography and bone histomorphometric assays further demonstrated augmentation of the production of new trabecular bone in the chitosan nanofiber-treated group. Furthermore, implantation of chitosan nanofiber scaffolds led to a significant increase in the trabecular bone thickness but a reduction in the trabecular parameter factor. As to the mechanisms, analysis by confocal microscopy showed that implantation of chitosan nanofiber scaffolds increased levels of Runt-related transcription factor 2 (Runx2), a key transcription factor that regulates osteogenesis, in the bone defect sites. Successively, amounts of alkaline phosphatase and osteocalcin, two typical biomarkers that can simulate bone maturation, were augmented following implantation of chitosan nanofiber scaffolds. Taken together, this translational study showed a beneficial effect of chitosan nanofiber scaffolds on bone healing through stimulating trabecular bone production due to upregulation of Runx2-mediated alkaline

  2. Chitosan nanofiber scaffold improves bone healing via stimulating trabecular bone production due to upregulation of the Runx2/osteocalcin/alkaline phosphatase signaling pathway

    PubMed Central

    Ho, Ming-Hua; Yao, Chih-Jung; Liao, Mei-Hsiu; Lin, Pei-I; Liu, Shing-Hwa; Chen, Ruei-Ming

    2015-01-01

    Osteoblasts play critical roles in bone formation. Our previous study showed that chitosan nanofibers can stimulate osteoblast proliferation and maturation. This translational study used an animal model of bone defects to evaluate the effects of chitosan nanofiber scaffolds on bone healing and the possible mechanisms. In this study, we produced uniform chitosan nanofibers with fiber diameters of approximately 200 nm. A bone defect was surgically created in the proximal femurs of male C57LB/6 mice, and then the left femur was implanted with chitosan nanofiber scaffolds for 21 days and compared with the right femur, which served as a control. Histological analyses revealed that implantation of chitosan nanofiber scaffolds did not lead to hepatotoxicity or nephrotoxicity. Instead, imaging analyses by X-ray transmission and microcomputed tomography showed that implantation of chitosan nanofiber scaffolds improved bone healing compared with the control group. In parallel, microcomputed tomography and bone histomorphometric assays further demonstrated augmentation of the production of new trabecular bone in the chitosan nanofiber-treated group. Furthermore, implantation of chitosan nanofiber scaffolds led to a significant increase in the trabecular bone thickness but a reduction in the trabecular parameter factor. As to the mechanisms, analysis by confocal microscopy showed that implantation of chitosan nanofiber scaffolds increased levels of Runt-related transcription factor 2 (Runx2), a key transcription factor that regulates osteogenesis, in the bone defect sites. Successively, amounts of alkaline phosphatase and osteocalcin, two typical biomarkers that can simulate bone maturation, were augmented following implantation of chitosan nanofiber scaffolds. Taken together, this translational study showed a beneficial effect of chitosan nanofiber scaffolds on bone healing through stimulating trabecular bone production due to upregulation of Runx2-mediated alkaline

  3. The Argonne fragment mass analyzer

    SciTech Connect

    Davids, C.N.; Larson, J.D.

    1988-01-01

    The Fragment Mass Analyzer (FMA) is currently under construction at the ATLAS facility. The FMA is an eight-meter long recoil mass spectrometer which will be used to separate nuclear reaction products from the primary heavy-ion beam and disperse them by A/q (mass/charge) at the focal plane. The FMA will be used in many different types of experiments. Gamma rays originating from very weak fusion-evaporation channels can be observed in coincidence with the recoil nucleus identified at the FMA focal plane. Production and decay of nuclei far from stability will be studied at the focal plane by implanting exotic recoils directly into detectors or by using a fast tape transport system. The FMA will also be used for reaction mechanism studies. A radioactive beam facility behind the focal plane is planned, which will allow beta-NMR and nuclear moment measurements to be made. The FMA will utilize the wide range of beam and intensities to be provided by the new ECR-positive ion injector also under construction at ATLAS. 8 refs., 4 figs., 1 tab.

  4. Monitoring of Land Deformation Due to Oil Production by InSAR Time Series Analysis Using PALSAR Data in Bolivarian Republic of Venezuela

    NASA Astrophysics Data System (ADS)

    Deguchi, Tomonori; Narita, Tatsuhiko

    2015-05-01

    The target area of this study is the Maracaibo sedimentary basin located in the western part of Bolivarian Republic of Venezuela. The full-scale exploration and development for oil resources in Venezuela which was the greatest oil-producing country in South America had begun at the Maracaibo sedimentary basin in the 1910s, and it was a center of the oil product in Venezuela until the 1980s. But, in most of oil fields in the Maracaibo sedimentary basin, there is concern over the drain on recoverable reserves due to deterioration, and the production amount of petroleum in Venezuela has been diminishing these days. Leveling and GPS surveying were carried out in the past, and they revealed that the large-scale subsidence phenomenon of which cumulative subsidence amount was approximately 5 meter had occurred. The authors applied the vertical displacement measurement by InSAR time series analysis using PALSAR data obtained in the Fine-beam and ScanSAR observation mode. As a result, it could be confirmed clear ground deformation in the surrounding of three oil fields (Tia Juana, Lagunillas and Bachaquero) and easily recognized that the areas of phase anomalies detected by this analysis had expanded and the number of interference fringes had increased over time. The annual velocity of vertical ground surface displacement measured by InSAR time series analysis was -51 mm per year, -103 mm per year and -58 mm per year in Tia Juana, Lagunillas and Bachaquero oil field respectively. The tendency that an earth surface shifted towards the center of phase anomalies was detected from the result of the horizontal ground change measurement. It was interpreted from Google Earth and Landsat images that oil-related facilities (mainly bowling stations) were built intensively over the areas where phase anomalies were detected. Therefore, it was inferred that there was a high association between the operation activity of the oil field and ground deformation. In addition, the deterioration

  5. Binary stars - Formation by fragmentation

    NASA Technical Reports Server (NTRS)

    Boss, Alan P.

    1988-01-01

    Theories of binary star formation by capture, separate nuclei, fission and fragmentation are compared, assessing the success of theoretical attempts to explain the observed properties of main-sequence binary stars. The theory of formation by fragmentation is examined, discussing the prospects for checking the theory against observations of binary premain-sequence stars. It is concluded that formation by fragmentation is successful at explaining many of the key properties of main-sequence binary stars.

  6. Cord blood CD4(+)CD25(+) regulatory T cells fail to inhibit cord blood NK cell functions due to insufficient production and expression of TGF-beta1.

    PubMed

    Xu, Liqing; Tanaka, Shigeki; Bonno, Motoki; Ido, Masaru; Kawai, Masatoshi; Yamamoto, Hatsumi; Komada, Yoshihiro

    2014-07-01

    Although CD4(+)CD25(+) Treg (Treg) cells are known to modulate NK cell functions, the modulation mechanism of these cells in cord blood has not been fully clarified. The purpose of this study was to clarify the mechanism whereby cord blood Treg cells modulate cord NK cells. By performing various cultures of purified NK cells with or without autologous Treg cells, diminished inhibitory effects of cord Treg cells towards cord NK cell functions, including activation, cytokine production, and cytotoxicity, were observed. We also observed lower secretion of sTGF-beta1 and lower expression of mTGF-beta1 by cord Treg cells than by adult Treg cells. These data revealed the capability of adult Treg cells to suppress rhIL-2-stimulated NK cell function by TGF-beta1, both membrane-bound and soluble types. The reduced inhibitory capabilities of cord Treg cells compared with adult Treg cells is thought to be due to insufficient expression of TGF-beta1.

  7. Quantitative experimental modelling of fragmentation during explosive volcanism

    NASA Astrophysics Data System (ADS)

    Thordén Haug, Ø.; Galland, O.; Gisler, G.

    2012-04-01

    Phreatomagmatic eruptions results from the violent interaction between magma and an external source of water, such as ground water or a lake. This interaction causes fragmentation of the magma and/or the host rock, resulting in coarse-grained (lapilli) to very fine-grained (ash) material. The products of phreatomagmatic explosions are classically described by their fragment size distribution, which commonly follows power laws of exponent D. Such descriptive approach, however, considers the final products only and do not provide information on the dynamics of fragmentation. The aim of this contribution is thus to address the following fundamental questions. What are the physics that govern fragmentation processes? How fragmentation occurs through time? What are the mechanisms that produce power law fragment size distributions? And what are the scaling laws that control the exponent D? To address these questions, we performed a quantitative experimental study. The setup consists of a Hele-Shaw cell filled with a layer of cohesive silica flour, at the base of which a pulse of pressurized air is injected, leading to fragmentation of the layer of flour. The fragmentation process is monitored through time using a high-speed camera. By varying systematically the air pressure (P) and the thickness of the flour layer (h) we observed two morphologies of fragmentation: "lift off" where the silica flour above the injection inlet is ejected upwards, and "channeling" where the air pierces through the layer along sub-vertical conduit. By building a phase diagram, we show that the morphology is controlled by P/dgh, where d is the density of the flour and g is the gravitational acceleration. To quantify the fragmentation process, we developed a Matlab image analysis program, which calculates the number and sizes of the fragments, and so the fragment size distribution, during the experiments. The fragment size distributions are in general described by power law distributions of

  8. Species–fragmented area relationship

    PubMed Central

    Hanski, Ilkka; Zurita, Gustavo A.; Bellocq, M. Isabel; Rybicki, Joel

    2013-01-01

    The species–area relationship (SAR) gives a quantitative description of the increasing number of species in a community with increasing area of habitat. In conservation, SARs have been used to predict the number of extinctions when the area of habitat is reduced. Such predictions are most needed for landscapes rather than for individual habitat fragments, but SAR-based predictions of extinctions for landscapes with highly fragmented habitat are likely to be biased because SAR assumes contiguous habitat. In reality, habitat loss is typically accompanied by habitat fragmentation. To quantify the effect of fragmentation in addition to the effect of habitat loss on the number of species, we extend the power-law SAR to the species–fragmented area relationship. This model unites the single-species metapopulation theory with the multispecies SAR for communities. We demonstrate with a realistic simulation model and with empirical data for forest-inhabiting subtropical birds that the species–fragmented area relationship gives a far superior prediction than SAR of the number of species in fragmented landscapes. The results demonstrate that for communities of species that are not well adapted to live in fragmented landscapes, the conventional SAR underestimates the number of extinctions for landscapes in which little habitat remains and it is highly fragmented. PMID:23858440

  9. Global Crop Yield Reductions due to Surface Ozone Exposure: Crop Production Losses and Economic Damage in 2000 and 2030 under Two Future Scenarios of O3 Pollution

    NASA Astrophysics Data System (ADS)

    Avnery, S.; Mauzerall, D. L.; Liu, J.; Horowitz, L. W.

    2011-12-01

    Field studies demonstrate that exposure to elevated concentrations of surface ozone (O3) may cause substantial reductions in the agricultural yields of many crops. As emissions of O3 precursors rise in many parts of the world over the next few decades, yield reductions from O3 exposure may increase the challenges of feeding a global population projected to grow from approximately 6 to 8 billion people between 2000 and 2030. This study estimates global yield reductions of three key staple crops (soybean, maize, and wheat) due to surface ozone exposure in 2000 and 2030 according to two trajectories of O3 pollution: the Intergovernmental Panel on Climate Change Special Report on Emissions Scenarios (IPCC SRES) A2 and B1 storylines, which represent upper- and lower-boundary projections, respectively, of most O3 precursor emissions in 2030. Our results indicate that year 2000 O3-induced global yield reductions ranged, depending on the O3 exposure metric used, from 3.9-15% for wheat, 8.5-14% for soybean, and 2.2-5.5% for maize. Global crop production losses totaled 79-121 million metric tons, worth 11-18 billion annually (USD2000). In the 2030-A2 scenario we find global O3-induced yield loss of wheat to be 5.4-26% (a further reduction in yield of +1.5-10% from year 2000 values), 15-19% for soybean (reduction of +0.9-11%), and 4.4-8.7% for maize (reduction of +2.1-3.2%) depending on the metric used, with total global agricultural losses worth 17-35 billion USD2000 annually (an increase of +6-17 billion in losses from 2000). Under the 2030-B1 scenario, we project less severe but still substantial reductions in yields: 4.0-17% for wheat (a further decrease in yield of +0.1-1.8% from 2000), 9.5-15% for soybean (decrease of +0.7-1.0%), and 2.5-6.0% for maize (decrease of+ 0.3-0.5%), with total losses worth 12-21 billion annually (an increase of +$1-3 billion in losses from 2000). Because our analysis uses crop data from the year 2000, which likely underestimates agricultural

  10. The Evolution of Grain Size Distribution in Explosive Rock Fragmentation - Sequential Fragmentation Theory Revisited

    NASA Astrophysics Data System (ADS)

    Scheu, B.; Fowler, A. C.

    2015-12-01

    Fragmentation is a ubiquitous phenomenon in many natural and engineering systems. It is the process by which an initially competent medium, solid or liquid, is broken up into a population of constituents. Examples occur in collisions and impacts of asteroids/meteorites, explosion driven fragmentation of munitions on a battlefield, as well as of magma in a volcanic conduit causing explosive volcanic eruptions and break-up of liquid drops. Besides the mechanism of fragmentation the resulting frequency-size distribution of the generated constituents is of central interest. Initially their distributions were fitted empirically using lognormal, Rosin-Rammler and Weibull distributions (e.g. Brown & Wohletz 1995). The sequential fragmentation theory (Brown 1989, Wohletz at al. 1989, Wohletz & Brown 1995) and the application of fractal theory to fragmentation products (Turcotte 1986, Perfect 1997, Perugini & Kueppers 2012) attempt to overcome this shortcoming by providing a more physical basis for the applied distribution. Both rely on an at least partially scale-invariant and thus self-similar random fragmentation process. Here we provide a stochastic model for the evolution of grain size distribution during the explosion process. Our model is based on laboratory experiments in which volcanic rock samples explode naturally when rapidly depressurized from initial pressures of several MPa to ambient conditions. The physics governing this fragmentation process has been successfully modelled and the observed fragmentation pattern could be numerically reproduced (Fowler et al. 2010). The fragmentation of these natural rocks leads to grain size distributions which vary depending on the experimental starting conditions. Our model provides a theoretical description of these different grain size distributions. Our model combines a sequential model of the type outlined by Turcotte (1986), but generalized to cater for the explosive process appropriate here, in particular by

  11. Kimberlite Wall Rock Fragmentation: Venetia K08 Pipe Development

    NASA Astrophysics Data System (ADS)

    Barnett, W.; Kurszlaukis, S.; Tait, M.; Dirks, P.

    2009-05-01

    volatile-fluid phases, which have encountered a local hydrologically active fault. The explosions were inadequate in mechanical energy release (72% of a mine production blast) to eject material from the pipe, and the pipe may not have breached surface. The next stage of fragmentation is interpreted to have been an upward-moving collapse of the pre-conditioned hanging wall of a subterranean volcanic excavation. This would explain the mega-scale layering across the width of the breccia pipe. It must be questioned whether the preserved K08 architecture represents early pipe development in general, or is a special case of a late pipe geometry modification process. Previous literature describes sidewall and hanging wall caving processes elsewhere in the Venetia cluster and other kimberlites world wide. A requirement for emplacement models that include upward pipe growth processes is the availability of space (mass deficit at depth) into which the caving and/or dilating breccia can expand. It is possible that K08 might be connected to adjacent K02 at a depth somewhere below 400m, which would explain the presence of volcaniclastic kimberlite at depth within the K08 pipe. K08 is likely an incomplete ancillary sideward development to K02. The latest stage of brecciation is quantified through an observed evolution in the fractal dimension of the PSD. It is interpreted to be due to complex adjustments in volume in the pipe causing shearing and re-fragmentation of the breccia.

  12. Exponential and power-law mass distributions in brittle fragmentation

    NASA Astrophysics Data System (ADS)

    Åström, J. A.; Linna, R. P.; Timonen, J.; Møller, Peder Friis; Oddershede, Lene

    2004-08-01

    Generic arguments, a minimal numerical model, and fragmentation experiments with gypsum disk are used to investigate the fragment-size distribution that results from dynamic brittle fragmentation. Fragmentation is initiated by random nucleation of cracks due to material inhomogeneities, and its dynamics are pictured as a process of propagating cracks that are unstable against side-branch formation. The initial cracks and side branches both merge mutually to form fragments. The side branches have a finite penetration depth as a result of inherent damping. Generic arguments imply that close to the minimum strain (or impact energy) required for fragmentation, the number of fragments of size s scales as s-(2D-1)/Df1(-(2/λ)Ds)+f2(-s0-1(λ+s1/D)D) , where D is the Euclidean dimension of the space, λ is the penetration depth, and f1 and f2 can be approximated by exponential functions. Simulation results and experiments can both be described by this theoretical fragment-size distribution. The typical largest fragment size s0 was found to diverge at the minimum strain required for fragmentation as it is inversely related to the density of initially formed cracks. Our results also indicate that scaling of s0 close to this divergence depends on, e.g., loading conditions, and thus is not universal. At the same time, the density of fragment surface vanishes as L-1 , L being the linear dimension of the brittle solid. The results obtained provide an explanation as to why the fragment-size distributions found in nature can have two components, an exponential as well as a power-law component, with varying relative weights.

  13. Gluon Fragmentation Functions in the Nambu-Jona-Lasinio Model

    NASA Astrophysics Data System (ADS)

    Yang, Dong-Jing; Li, Hsiang-nan

    We derive gluon fragmentation functions in the Nambu-Jona-Lasinio (NJL) model by approximating a gluon as a fictitious color-octet quark-anti-quark (qbar{q}) pair. Gluon elementary fragmentation functions are derived from the quark and anti-quark elementary fragmentation functions for emitting specific mesons in the NJL model under the requirement that the qbar{q} pair maintains in the flavor-singlet state after meson emission. An iteration method and an inverse matrix method based on the gluon elementary fragmentation functions then yield the gluon fragmentation functions at the model scale. It is found that the resultant gluon fragmentation functions are stable with respect to variation of relevant model parameters, especially after QCD evolution to a higher scale is implemented. We show that the inclusion of the gluon fragmentation functions into the theoretical predictions from only the quark fragmentation functions greatly improve the agreement with the SLD data for the pion and kaon productions in e+e- annihilation. Our proposal provides a plausible construct for the gluon fragmentation functions, which are supposed to be null in the NJL model.

  14. Modelling of the PELE fragmentation dynamics

    NASA Astrophysics Data System (ADS)

    Verreault, J.

    2014-05-01

    The Penetrator with Enhanced Lateral Effect (PELE) is a type of explosive-free projectile that undergoes radial fragmentation upon an impact with a target plate. This type of projectile is composed of a brittle cylindrical shell (the jacket) filled in its core with a material characterized with a large Poisson's ratio. Upon an impact with a target, the axial compression causes the filling to expand in the radial direction. However, due to the brittleness of the jacket material, very little radial deformation can occur which creates a radial stress between the two materials and a hoop stress in the jacket. Fragmentation of the jacket occurs if the hoop stress exceeds the material's ultimate stress. The PELE fragmentation dynamics is explored via Finite-Element Method (FEM) simulations using the Autodyn explicit dynamics hydrocode. The numerical results are compared with an analytical model based on wave interactions, as well as with the experimental investigation of Paulus and Schirm (1996). The comparison is based on the mechanical stress in the filling and the qualitative fragmentation of the jacket.

  15. Fragmentation and hydration of tektites and microtektites

    USGS Publications Warehouse

    Glass, B.P.; Muenow, D.W.; Bohor, B.F.; Meeker, G.P.

    1997-01-01

    An examination of data collected over the last 30 years indicates that the percent of glass fragments vs. whole splash forms in the Cenozoic microtektite strewn fields increases towards the source crater (or source region). We propose that this is due to thermal stress produced when tektites and larger microtektites fall into water near the source crater while still relatively hot (>1150 ??C). We also find evidence (low major oxide totals, frothing when melted) for hydration of most of the North American tektite fragments and microtektites found in marine sediments. High-temperature mass spectrometry indicates that these tektite fragments and microtektites contain up to 3.8 wt% H2O. The H2O-release behavior during the high-temperature mass-spectrometric analysis, plus high Cl abundances (???0.05 wt%), indicate that the North. American tektite fragments and microtektites were hydrated in the marine environment (i.e., the H2O was not trapped solely on quenching from a melt). The younger Ivory Coast and Australasian microtektites do not exhibit much evidence of hydration (at least not in excess of 0.5 wt% H2O); this suggests that the degree of hydration increases with age. In addition, we find that some glass spherules (with 65 wt% SiO2 can undergo simple hydration in the marine environment, while impact glasses (with <65 wt% SiO2) can also undergo palagonitization.

  16. Mechanisms of fragmentation of cationic peptide ions

    NASA Astrophysics Data System (ADS)

    Zhao, Hong; Adams, Jeanette

    1993-06-01

    Fragmentation mechanisms for formation of several commonly occurring product ions in high-energy collision-induced induced decomposition spectra of either (M + Cat2+ - H)+ ions of peptides cationized with alkaline earth metal ions, (M + Ca+)+ ions cationized with alkali metal ions, or (M + H)+ ions are evaluated by using deuterium-labelled peptides. The different sources of hydrogen transferred in the reactions are identified. Our study supports some previously proposed mechanisms but also provides evidence for others.

  17. Thermodynamical string fragmentation

    NASA Astrophysics Data System (ADS)

    Fischer, Nadine; Sjöstrand, Torbjörn

    2017-01-01

    The observation of heavy-ion-like behaviour in pp collisions at the LHC suggests that more physics mechanisms are at play than traditionally assumed. The introduction e.g. of quark-gluon plasma or colour rope formation can describe several of the observations, but as of yet there is no established paradigm. In this article we study a few possible modifications to the Pythia event generator, which describes a wealth of data but fails for a number of recent observations. Firstly, we present a new model for generating the transverse momentum of hadrons during the string fragmentation process, inspired by thermodynamics, where heavier hadrons naturally are suppressed in rate but obtain a higher average transverse momentum. Secondly, close-packing of strings is taken into account by making the temperature or string tension environment-dependent. Thirdly, a simple model for hadron rescattering is added. The effect of these modifications is studied, individually and taken together, and compared with data mainly from the LHC. While some improvements can be noted, it turns out to be nontrivial to obtain effects as big as required, and further work is called for.

  18. Alterations in platelet Ca2+ signalling in diabetic patients is due to increased formation of superoxide anions and reduced nitric oxide production.

    PubMed

    Schaeffer, G; Wascher, T C; Kostner, G M; Graier, W F

    1999-02-01

    enhanced by excessive superoxide production and an attenuated negative direct or indirect feedback control by nitric oxide, due to its reduced production.

  19. Habitat fragmentation, climate change, and inbreeding in plants.

    PubMed

    Leimu, Roosa; Vergeer, Philippine; Angeloni, Francesco; Ouborg, N Joop

    2010-05-01

    Habitat fragmentation and climate change are recognized as major threats to biodiversity. The major challenge for present day plant populations is how to adapt and cope with altered abiotic and biotic environments caused by climate change, when at the same time adaptive and evolutionary potential is decreased as habitat fragmentation reduces genetic variation and increases inbreeding. Although the ecological and evolutionary effects of fragmentation and climate change have been investigated separately, their combined effects remained largely unexplored. In this review, we will discuss the individual and joint effects of habitat fragmentation and climate change on plants and how the abilities and ways in which plants can respond and cope with climate change may be compromised due to habitat fragmentation.

  20. Change and fragmentation trends of Zhanjiang mangrove forests in southern China using multi-temporal Landsat imagery (1977-2010)

    NASA Astrophysics Data System (ADS)

    Li, M. S.; Mao, L. J.; Shen, W. J.; Liu, S. Q.; Wei, A. S.

    2013-09-01

    Mangrove forests, which are found in saline coastal environments around the tropical and subtropical latitudes, are among the most productive terrestrial ecosystems in the world and provide valuable ecological and societal goods and services. The objective of this work was to characterize the spatio-temporal changes in mangrove distribution and fragmentation patterns in the Zhanjiang National Mangrove Forest Nature Reserve, Guangdong province of Southern China, from 1977 through 2010. In addition, a major goal was to assess the socio-economic drivers contributing to the chronic changes taking place within and around the mangrove reserve. Land use and land cover data sets were generated for the reserve for multiple years via unsupervised classification using Landsat time series images. Mangrove fragmentation patterns were then assessed with a fragmentation model. Results revealed that the mangrove spatial extent decreased sharply during the period from 1977 to 1991 due to deforestation caused by diverse development programs, particularly shrimp farming. Afterwards, there was a continuous increase in mangrove extent from 1991 to 2010 due to afforestation and conservation efforts. The mangrove fragmentation trends depicted by the fragmentation model had a high degree of correlation with the observed areal changes. Additionally, the recorded dynamics of the local biodiversity (mainly birds) were consistent with the mangrove ecosystem fragmentation trends over time, and different fragmentation components, including interior, perforated and edge, had distinct impacts on the local mangrove-dependent biodiversity. The most effective way to protect and expand the current mangroves include the following: (1) establishment of mangrove natural reserves, (2) forceful implementation of regulations, (3) establishment of educational programs related to mangrove management, (4) deepening international exchanges and cooperation and (5) increasing the transparency of the project

  1. Fragmentation reactions of deprotonated peptides containing aspartic acid

    NASA Astrophysics Data System (ADS)

    Harrison, Alex G.; Young, Alex B.

    2006-09-01

    The fragmentation reactions of deprotonated peptides containing aspartic acid have been elucidated using MS2 and MS3 experiments and accurate mass measurements where necessary. The disposition of labile (N and O bonded) hydrogens in the fragmentation products has been studied by exchanging the labile hydrogens for deuterium whereby the [MD]- ion is formed on electrospray ionization. [alpha]-Aspartyl and [beta]-aspartyl dipeptides give very similar fragment ion spectra on collisional activation, involving for both species primarily formation of the y1 ion and loss of H2O from [MH]- followed by further fragmentation, thus precluding the distinction of the isomeric species by negative ion tandem mass spectrometry. Dipeptides of sequence HXxxAspOH give characteristic spectra different from the [alpha]- and [beta]-isomers. For larger peptides containing aspartic acid a common fragmentation reaction involves nominal cleavage of the NC bond N-terminal to the aspartic acid residue to form a c ion (deprotonated amino acid amide (c1) or peptide amide (cn)) and the complimentary product involving elimination of a neutral amino acid amide or peptide amide. When aspartic acid is in the C-terminal position this fragmentation reaction occurs from the [MH]- ion while when the aspartic acid is not in the C-terminal position the fragmentation reaction occurs mainly from the [MHH2O]- ion. The products of this NC bond cleavage reaction serve to identify the position of the aspartic acid residue in the peptide.

  2. Fragment screening and HIV therapeutics.

    PubMed

    Bauman, Joseph D; Patel, Disha; Arnold, Eddy

    2012-01-01

    Fragment screening has proven to be a powerful alternative to traditional methods for drug discovery. Biophysical methods, such as X-ray crystallography, NMR spectroscopy, and surface plasmon resonance, are used to screen a diverse library of small molecule compounds. Although compounds identified via this approach have relatively weak affinity, they provide a good platform for lead development and are highly efficient binders with respect to their size. Fragment screening has been utilized for a wide range of targets, including HIV-1 proteins. Here, we review the fragment screening studies targeting HIV-1 proteins using X-ray crystallography or surface plasmon resonance. These studies have successfully detected binding of novel fragments to either previously established or new sites on HIV-1 protease and reverse transcriptase. In addition, fragment screening against HIV-1 reverse transcriptase has been used as a tool to better understand the complex nature of ligand binding to a flexible target.

  3. Inhibition of the tyrosine kinase activity of v-src, v-fgr, and v-yes gene products by a monoclonal antibody which binds both amino and carboxy peptide fragments of pp60v-src.

    PubMed Central

    McCarley, D J; Parsons, J T; Benjamin, D C; Parsons, S J

    1987-01-01

    A monoclonal antibody, R2D2, raised to the src gene product of Rous sarcoma virus was found to inhibit the tyrosine protein kinase activity of pp60v-src in autophosphorylation reactions and in reactions involving exogenously added substrates, such as casein and histone. R2D2 also inhibited the enzymatic activity of two related viral transforming proteins, pp70gag-fgr and pp90gag-yes. The inhibitory ability of R2D2 was dependent upon immunoglobulin concentration and could be demonstrated in both immune complexes formed directly with R2D2 and preformed immune complexes to which R2D2 was added. Binding sites in both the amino-terminal 110 amino acid residues and the carboxy-terminal 240 amino acids of pp60v-src were identified for R2D2. These results indicate that at least part of the epitope recognized by R2D2 resides within a region of the src protein which is required for protein kinase activity. The localization of the R2D2 epitope to the amino- as well as to the carboxy-terminal portions of pp60v-src, together with results of studies analyzing the relative binding efficiencies of R2D2 to the intact protein and to V-8 proteolytic fragments of pp60v-src, are consistent with the view that the R2D2 epitope is conformational in nature and that it is assembled from residues contained within both N-terminal and C-terminal regions of the molecule. Images PMID:2437325

  4. Expression of tetanus toxin fragment C in yeast: gene synthesis is required to eliminate fortuitous polyadenylation sites in AT-rich DNA.

    PubMed Central

    Romanos, M A; Makoff, A J; Fairweather, N F; Beesley, K M; Slater, D E; Rayment, F B; Payne, M M; Clare, J J

    1991-01-01

    Fragment C is a non-toxic 50 kDa fragment of tetanus toxin which is a candidate subunit vaccine against tetanus. The AT-rich Clostridium tetani DNA encoding fragment C could not be expressed in Saccharomyces cerevisiae due to the presence of several fortuitous polyadenylation sites which gave rise to truncated mRNAs. The polyadenylation sites were eliminated by chemically synthesising the DNA with increased GC-content (from 29% to 47%). Synthesis of the entire gene (1400 base pairs) was necessary to generate full-length transcripts and for protein production in yeast. Using a GAL1 promoter vector, fragment C was expressed to 2-3% of soluble cell protein. Fragment C could also be secreted using the alpha-factor leader peptide as a secretion signal. The protein was present at 5-10 mg/l in the culture medium in two forms: a high molecular mass hyper-glycosylated protein (75-200 kDa) and a core-glycosylated protein (65 kDa). Intracellular fragment C was as effective in vaccinating mice against tetanus authentic fragment C. The glycosylated material was inactive, though it was rendered fully active by de-glycosylation. Images PMID:2027754

  5. Fragment screening using X-ray crystallography.

    PubMed

    Davies, Thomas G; Tickle, Ian J

    2012-01-01

    The fragment-based approach is now well established as an important component of modern drug discovery. A key part in establishing its position as a viable technique has been the development of a range of biophysical methodologies with sufficient sensitivity to detect the binding of very weakly binding molecules. X-ray crystallography was one of the first techniques demonstrated to be capable of detecting such weak binding, but historically its potential for screening was under-appreciated and impractical due to its relatively low throughput. In this chapter we discuss the various benefits associated with fragment-screening by X-ray crystallography, and describe the technical developments we have implemented to allow its routine use in drug discovery. We emphasize how this approach has allowed a much greater exploitation of crystallography than has traditionally been the case within the pharmaceutical industry, with the rapid and timely provision of structural information having maximum impact on project direction.

  6. Temperate forest fragments maintain aboveground carbon stocks out to the forest edge despite changes in community composition.

    PubMed

    Ziter, Carly; Bennett, Elena M; Gonzalez, Andrew

    2014-11-01

    Edge effects are among the primary mechanisms by which forest fragmentation can influence the link between biodiversity and ecosystem processes, but relatively few studies have quantified these mechanisms in temperate regions. Carbon storage is an important ecosystem function altered by edge effects, with implications for climate change mitigation. Two opposing hypotheses suggest that aboveground carbon (AGC) stocks at the forest edge will (a) decrease due to increased tree mortality and compositional shifts towards smaller, lower wood density species (e.g., as seen in tropical systems) or, less often, (b) increase due to light/temperature-induced increases in diversity and productivity. We used field-based measurements, allometry, and mixed models to investigate the effects of proximity to the forest edge on AGC stocks, species richness, and community composition in 24 forest fragments in southern Quebec. We also asked whether fragment size or connectivity with surrounding forests altered these edge effects. AGC stocks remained constant across a 100 m edge-to-interior gradient in all fragment types, despite changes in tree community composition and stem density consistent with expectations of forest edge effects. We attribute this constancy primarily to compensatory effects of small trees at the forest edge; however, it is due in some cases to the retention of large trees at forest edges, likely a result of forest management. Our results suggest important differences between temperate and tropical fragments with respect to mechanisms linking biodiversity and AGC dynamics. Small temperate forest fragments may be valuable in conservation efforts based on maintaining biodiversity and multiple ecosystem services.

  7. Fragmentation of condensed material by isochoric heating and release

    SciTech Connect

    Glenn, L.A.

    1983-03-01

    A model is suggested to describe the mechanics of fragmentation when a liquid or solid body disassembles under intense isochoric heating. The model is based on the concept that surface area created in the fragmentation process is governed by an equilibrium balance of the surface energy and a local inertial or kinetic energy. An expression is derived for the resulting fragment size as a function of the initial size, the specific energy deposited, and thermomechanical properties of the material. The theory is applied to calculate the blanket break-up due to neutron heating in the HYLIFE and Cascade Chamber inertial confinement fusion reactors.

  8. Comparison of calculated and experimental results of fragmenting cylinder experiments

    SciTech Connect

    WILSON,L.T.; REEDAL,D.R.; KIPP,MARLIN E.; MARTINEZ,REINA R.; GRADY,D.E.

    2000-06-02

    The Grady-Kipp fragmentation model provides a physically based method for determining the fracture and breakup of materials under high loading rates. Recently, this model has been implemented into the CTH Shock Physics Code and has been used to simulate several published experiments. Materials studied in this paper are AerMet 100 steel and a 90% tungsten alloy. The experimental geometry consists of a right circular cylinder filled with an explosive main charge that is initiated at its center. The sudden expansion of the resulting detonation products causes fracture of the cylinder. Strain rates seen in the cylinder are on the order of 10{sup 4} s{sup {minus}1}. The average fragment sizes calculated with the Grady-Kipp fragmentation model successfully replicate the mean fragment size obtained from the experimental fragment distribution. When Poisson statistics are applied to the calculated local average fragment sizes, good correlation is also observed with the shape of the experimental cumulative fragment distribution. The experimental fragmentation results, CTH numerical simulations, and correlation of these numerical results with the experimental data are described.

  9. Gluon fragmentation functions in the Nambu-Jona-Lasinio model

    NASA Astrophysics Data System (ADS)

    Yang, Dong-Jing; Li, Hsiang-nan

    2016-09-01

    We derive gluon fragmentation functions in the Nambu-Jona-Lasinio (NJL) model by treating a gluon as a pair of color lines formed by a fictitious quark and antiquark (q q ¯). Gluon elementary fragmentation functions are obtained from the quark and antiquark elementary fragmentation functions for emitting specific mesons in the NJL model under the requirement that the q q ¯ pair maintains in the flavor-singlet state after meson emissions. An integral equation, which iterates the gluon elementary fragmentation functions to all orders, is then solved to yield the gluon fragmentation functions at a model scale. It is observed that these solutions are stable with respect to variation of relevant model parameters, especially after QCD evolution to a higher scale is implemented. We show that the inclusion of the gluon fragmentation functions into the theoretical predictions from only the quark fragmentation functions greatly improves the agreement with the SLD data for the pion and kaon productions in e+e- annihilation. Our proposal provides a plausible construct for the gluon fragmentation functions, which are supposed to be null in the NJL model.

  10. Computational and Experimental Determination of Fragmentation for Naturally Fragmenting Warheads

    DTIC Science & Technology

    1981-05-01

    Table Page I Chemical analysis of Armco iron and HF-I steel ....................... 3 2 Summary of tensile-pull measurements for transverse-direction...ntered) REPORT DOCUMENTATION PAGE - E-EFORE COMTLETING FORM I REPORT NUMBER 2 GOVT ACCESSION NO. 3 RECIPIENT’S CATALOG NUMBERNSWC TR 80-238 4 TITLE (and...Sulbtitle) S TYPE OF REPORT & PERIOD COVERED COMPUTATIONAL AND EXPERIMENTAL 1 Final DETERMINATION OF FRAGMENTATION FOR NATURALLY FRAGMENTING WARHEADS

  11. Depleted Uranium Test Range Fragment Reclamation

    DTIC Science & Technology

    1982-07-01

    fragment drying was necessary in order to obtain adequate vacuum levels in the VIR furnaces . e. Vacuujm Induction Remelting Fragments and Casting...Acid Pickle and Water Rinse .... ........ 2 d. Drying the Fragments .... ............... 2 e. Vacuum Induction Remelting Fragments and Casting...feasibility of reclaiming test range fragments by vacuum induction remelting (VIR). The technical direction of Phase 11 was highly dependent upon the

  12. The Spectrum of Satellite Breakup and Fragmentation

    NASA Astrophysics Data System (ADS)

    Finkleman, D.

    The objective of this paper is to expose the spectrum of satellite breakup physics and is implications for debris production and observables. Satellite response to the debris environment generally emphasizes small scale hypervelocity impact or the interaction of intense, coherent radiation with satellite surfaces or internals. There are empirical correlations of fragment size distributions based on arena tests and extremely rare observations of breakups in space. Klinkrad describes well research on material response to hypervelocity impact such as the ballistic limit for various materials and shielding walls. Smirnov, et. al., report well the phenomenology of breakups under the influence of nonuniform internal loading of monolithic bodies, such as pressurized tanks. They set forth the transformation of elastic energy into fragment kinetic energy. They establish a sound physical framework for bounding the number of fragments. We took advantage of these works in our previous papers. There is not much research into the response of nonuniform structures to hypervelocity collisions with similarly massive and complex objects. This work generally employs complex hydrodynamic and finite element computation that is not well suited to real time, operational assessment of the consequences of such encounters. We hope to diminish the void between the extremes of microscopic impact and complex hydrocodes. Our previous reports employed the framework established by Chobotov and Spencer, fundamentally equilibrium, Newtonian approach. We now explore the spectrum of interactions and debris evolutions possible with realistic combinations of these theories. The spectrum encompasses Newtonian, semi-elastic energy and momentum transfer through little or no momentum exchange and from virtually all of the mass of the colliders being involved through fractional mass involvement. We observe that the more Newtonian outcomes do not agree well with sparse observations of the few collisions that

  13. Fragmentation of drying paint layers

    NASA Astrophysics Data System (ADS)

    Bakos, Katinka; Dombi, András; Járai-Szabó, Ferenc; Néda, Zoltán

    2013-11-01

    Fragmentation of thin layers of drying granular materials on a frictional surface are studied both by experiments and computer simulations. Besides a qualitative description of the fragmentation phenomenon, the dependence of the average fragment size as a function of the layer thickness is thoroughly investigated. Experiments are done using a special nail polish, which forms characteristic crack structures during drying. In order to control the layer thickness, we diluted the nail polish in acetone and evaporated in a controlled manner different volumes of this solution on glass surfaces. During the evaporation process we managed to get an instable paint layer, which formed cracks as it dried out. In order to understand the obtained structures a previously developed spring-block model was implemented in a three-dimensional version. The experimental and simulation results proved to be in excellent qualitative and quantitative agreement. An earlier suggested scaling relation between the average fragment size and the layer thickness is reconfirmed.

  14. A semiempirical nuclear fragmentation model

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Townsend, Lawrence W.; Badavi, F. F.

    1987-01-01

    An abrasion/ablation model of heavy ion fragmentation is derived which includes a second order correction for the surface energy term and provides a reasonable representation of the present elemental fragmentation cross sections. The full development of the model must await the resolution of disagreement among different experiments and an expansion of the experimental data base to a broader set of projectile-target combinations.

  15. Spatial decoupling of agricultural production and consumption: quantifying dependences of countries on food imports due to domestic land and water constraints

    NASA Astrophysics Data System (ADS)

    Fader, Marianela; Gerten, Dieter; Krause, Michael; Lucht, Wolfgang; Cramer, Wolfgang

    2013-03-01

    In our globalizing world, the geographical locations of food production and consumption are becoming increasingly disconnected, which increases reliance on external resources and their trade. We quantified to what extent water and land constraints limit countries’ capacities, at present and by 2050, to produce on their own territory the crop products that they currently import from other countries. Scenarios of increased crop productivity and water use, cropland expansion (excluding areas prioritized for other uses) and population change are accounted for. We found that currently 16% of the world population use the opportunities of international trade to cover their demand for agricultural products. Population change may strongly increase the number of people depending on ex situ land and water resources up to about 5.2 billion (51% of world population) in the SRES A2r scenario. International trade will thus have to intensify if population growth is not accompanied by dietary change towards less resource-intensive products, by cropland expansion, or by productivity improvements, mainly in Africa and the Middle East. Up to 1.3 billion people may be at risk of food insecurity in 2050 in present low-income economies (mainly in Africa), if their economic development does not allow them to afford productivity increases, cropland expansion and/or imports from other countries.

  16. Assessment of possible human exposure to ochratoxin A in Croatia due to the consumption of dry-cured and fermented meat products.

    PubMed

    Vulić, Ana; Vahčić, Nada; Hengl, Brigita; Gross-Bošković, Andrea; Jurković, Martina; Kudumija, Nina; Pleadin, Jelka

    2016-09-01

    Ochratoxin A (OTA) is a toxic secondary metabolite produced by the fungi of Aspergillus and Penicillium species. Data indicate a frequent OTA contamination of cereals and cereal products, and consequently also the contamination of meat and meat products. The aim of this study was to determine a possible level of meat product consumers' exposure to OTA through the consumption of dry-cured and fermented meat products available on the Croatian market. Data showed the weekly OTA intake of 90% of male dry-cured ham consumers to be a maximum of 51.9 ng kg(-1) b.w., i.e., far below the tolerable weekly intake (TWI) of 120 ng kg(-1) b.w. weekly set out by the European Food Safety Authority (EFSA). OTA intake coming from the consumption of other meat products under study is lower and ranges from 0.1 to 42.1 ng kg(-1) b.w. weekly, dependent on the study. The study demonstrated that meat products in Croatia do not constitute a notable source of OTA in the human diet, so that the human health risk coming from the consumption of dry-cured and fermented meat products is negligible.

  17. Soil production is faster on south-facing slopes in the Susquehanna/Shale Hills Critical Zone Observatory due to periglacial, vegetative, and climate factors (Invited)

    NASA Astrophysics Data System (ADS)

    Jin, L.; Eissenstat, D.; Lin, H.; Chabaux, F. J.; Ma, L.; Brantley, S. L.

    2010-12-01

    The Susquehanna/Shale Hills Critical Zone Observatory is a V-shaped first-order catchment, developed almost entirely on the Silurian Rose Hill shale. We have focused on this site to investigate the controls, mechanisms and rates of shale weathering and soil formation. The parent rock is comprised primarily of illite, quartz, chlorite and ankerite. Three weathering fronts were observed at different depths identified in the northern ridgetop: ankerite dissolution begins tens of meters below land surface; plagioclase feldspar begins to weather at about 5-6 meters; chlorite and illite dissolve in the soil profiles to form more stable vermiculite and kaolinite. Six soil profiles were characterized: ridge top, mid-slope and valley floor sites on south-facing (9o) and north-facing (12o) planar hillslopes. Particle size analyses revealed that the soil textures were different: silt loam on the S-facing slope and sandy loam on the N-facing slope. All 6 sites show depletion profiles of major elements due to dissolution of clay minerals and feldspar. However, compared to the soils from the N-facing slope, those from S-facing slope were less depleted. Also local variations in element chemistry were observed with depth on S-facing slope to be superimposed on a general depletion trend. U disequilibrium isotopes of the bulk soils as well as parent rock were measured and modeled to estimate the soil production rates. In spite of similar slope, soil was produced, eroded and transported out of the S-facing slope at a faster rate. We argue that periglacial activities broke up bedrock and promoted soil erosion especially on the S-facing slopes, as evidenced by finer soil texture and fractures inferred by zig-zag variations in the depletion profiles. As such, the residence time of soil particles is generally shorter on the S-facing slope, preventing minerals in soils from becoming extensively weathered. Duration for the clay dissolution reactions (kinetically slow) plays a primary role

  18. An unusual fragmentation of oxetane-embedded tetracyclic ketal systems.

    PubMed

    Rao, G Hari Mangeswara; Khan, Faiz Ahmed

    2013-11-01

    An unusual route for the synthesis of functionalized cyclobutane derivatives starting from functionalized norbornane derivatives is reported. Base-induced fragmentation of an oxetanol-type moiety embedded in a tetracyclic norbornyl ketal leads to a cyclobutane-fused derivative as the major or exclusive product. The fragmentation reaction for bridgehead-bromine-substituted derivatives was much faster than for the corresponding chlorine-substituted substrates. The functionalized cyclobutane product was formed exclusively in high yield in the former case, while the latter furnished a minor uncyclized side product in varying yields.

  19. Primary and secondary fragmentation of crystal-bearing intermediate magma

    NASA Astrophysics Data System (ADS)

    Jones, Thomas J.; McNamara, Keri; Eychenne, Julia; Rust, Alison C.; Cashman, Katharine V.; Scheu, Bettina; Edwards, Robyn

    2016-11-01

    Crystal-rich intermediate magmas are subjected to both primary and secondary fragmentation processes, each of which may produce texturally distinct tephra. Of particular interest for volcanic hazards is the extent to which each process contributes ash to volcanic plumes. One way to address this question is by fragmenting pyroclasts under controlled conditions. We fragmented pumice samples from Soufriere Hills Volcano (SHV), Montserrat, by three methods: rapid decompression in a shock tube-like apparatus, impact by a falling piston, and milling in a ball mill. Grain size distributions of the products reveal that all three mechanisms produce fractal breakage patterns, and that the fractal dimension increases from a minimum of 2.1 for decompression fragmentation (primary fragmentation) to a maximum of 2.7 by repeated impact (secondary fragmentation). To assess the details of the fragmentation process, we quantified the shape, texture and components of constituent ash particles. Ash shape analysis shows that the axial ratio increases during milling and that particle convexity increases with repeated impacts. We also quantify the extent to which the matrix is separated from the crystals, which shows that secondary processes efficiently remove adhering matrix from crystals, particularly during milling (abrasion). Furthermore, measurements of crystal size distributions before (using x-ray computed tomography) and after (by componentry of individual grain size classes) decompression-driven fragmentation show not only that crystals influence particular size fractions across the total grain size distribution, but also that free crystals are smaller in the fragmented material than in the original pumice clast. Taken together, our results confirm previous work showing both the control of initial texture on the primary fragmentation process and the contributions of secondary processes to ash formation. Critically, however, our extension of previous analyses to characterisation

  20. Antibody Fragments as Probe in Biosensor Development

    PubMed Central

    Saerens, Dirk; Huang, Lieven; Bonroy, Kristien; Muyldermans, Serge

    2008-01-01

    Today's proteomic analyses are generating increasing numbers of biomarkers, making it essential to possess highly specific probes able to recognize those targets. Antibodies are considered to be the first choice as molecular recognition units due to their target specificity and affinity, which make them excellent probes in biosensor development. However several problems such as difficult directional immobilization, unstable behavior, loss of specificity and steric hindrance, may arise from using these large molecules. Luckily, protein engineering techniques offer designed antibody formats suitable for biomarker analysis. Minimization strategies of antibodies into Fab fragments, scFv or even single-domain antibody fragments like VH, VL or VHHs are reviewed. Not only the size of the probe but also other issues like choice of immobilization tag, type of solid support and probe stability are of critical importance in assay development for biosensing. In this respect, multiple approaches to specifically orient and couple antibody fragments in a generic one-step procedure directly on a biosensor substrate are discussed. PMID:27873779

  1. Production and characterization of a single-chain variable fragment linked alkaline phosphatase fusion protein for detection of O,O-diethyl organophosphorus pesticides in a one-step enzyme-linked immunosorbent assay

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A single-chain variable fragment (scFv) and alkaline phosphatase (AP) fusion protein for detection of O, O-diethyl organophosphorus pesticides (OPs) was produced and characterized. The scFv gene was prepared by cloning VL and VH genes from a hybridoma cell secreting monoclonal antibody with broad-s...

  2. The role of the position of the basic residue in the generation and fragmentation of peptide radical cations

    NASA Astrophysics Data System (ADS)

    Wee, Sheena; O'Hair, Richard A. J.; McFadyen, W. David

    2006-03-01

    Using simple di- and tripeptides GX, GGX, GXG, XG and XGG, the influence of the position of the basic residue, X (X = R, K and H), on the formation of peptide radical cations (M+) from [CuII(tpy)M]2+ complexes (where tpy = 2,2':6',2''-terpyridine) was probed. It was found that M+ is formed with greatest abundance when the basic residue is at the C-terminus. For arginine containing peptides, this may be due to further fragmentation of GRG+, RG+ and RGG+ at the MS2 stage. For lysine and histidine containing peptides, when the basic residue is not located at the C-terminus, competing fragmentation pathways that lead to peptide backbone cleavage are more facile than M+ formation. In order to gain some insights into the binding modes of these peptides to [CuII(tpy)]2+, the formation and fragmentation of copper(II) complexes of tripeptides protected as their carboxy methyl/ethyl esters (M-OR', R' = Me/Et) were also probed. The products of the competing fragmentation pathways of [CuII(tpy)M]2+, as well as the formation and fragmentation of [CuII(tpy)(M-OR')]2+, suggest that the unprotected peptides, M, mainly bind as zwitterions to [CuII(tpy)]2+. The fragmentation reactions of the radical cations (M+) were also studied. Radical driven side chain fragmentation reactions of M+ are dependent on both the position of the residue as well as the identity of other residues present in the peptide radical cations. GR and RG, which undergo rearrangement to form a mixed anhydride in their protonated forms, do not undergo the same rearrangement in their radical cation forms.

  3. Species Identification of Food Contaminating Beetles by Recognizing Patterns in Microscopic Images of Elytra Fragments

    PubMed Central

    Park, Su Inn; Bisgin, Halil; Ding, Hongjian; Semey, Howard G.; Langley, Darryl A.; Tong, Weida

    2016-01-01

    A crucial step of food contamination inspection is identifying the species of beetle fragments found in the sample, since the presence of some storage beetles is a good indicator of insanitation or potential food safety hazards. The current pratice, visual examination by human analysts, is time consuming and requires several years of experience. Here we developed a species identification algorithm which utilizes images of microscopic elytra fragments. The elytra, or hardened forewings, occupy a large portion of the body, and contain distinctive patterns. In addition, elytra fragments are more commonly recovered from processed food products than other body parts due to their hardness. As a preliminary effort, we chose 15 storage product beetle species frequently detected in food inspection. The elytra were then separated from the specimens and imaged under a microscope. Both global and local characteristics were quantified and used as feature inputs to artificial neural networks for species classification. With leave-one-out cross validation, we achieved overall accuracy of 80% through the proposed global and local features, which indicates that our proposed features could differentiate these species. Through examining the overall and per species accuracies, we further demonstrated that the local features are better suited than the global features for species identification. Future work will include robust testing with more beetle species and algorithm refinement for a higher accuracy. PMID:27341524

  4. Particle size statistics in dynamic fragmentation

    SciTech Connect

    Grady, D.E. )

    1990-12-15

    Condensed matter, when subjected to intense disrupting forces through impact or radiation deposition, will break up into a randomly distributed array of fragments. An earlier analysis of random fragmentation is extended to account for fragmentation in bodies which are finite in extent and for bodies within which the minimum fragment size is bounded. The statistical fragment size relations are compared with molecular dynamic simulations of dynamic fragmentation, with fragmentation caused by the high-energy collision of nuclear particles, and with the distribution of galaxies in the universe which are assumed to be fragment debris from the primordial Big Bang.

  5. The effect of radiative feedback on disc fragmentation

    NASA Astrophysics Data System (ADS)

    Mercer, Anthony; Stamatellos, Dimitris

    2017-02-01

    Protostellar discs may become massive enough to fragment producing secondary low-mass objects: planets, brown dwarfs and low-mass stars. We study the effect of radiative feedback from such newly formed secondary objects using radiative hydrodynamic simulations. We compare the results of simulations without any radiative feedback from secondary objects with those where two types of radiative feedback are considered: (i) continuous and (ii) episodic. We find that (i) continuous radiative feedback stabilizes the disc and suppresses further fragmentation, reducing the number of secondary objects formed; (ii) episodic feedback from secondary objects heats and stabilizes the disc when the outburst occurs, but shortly after the outburst stops, the disc becomes unstable and fragments again. However, fewer secondary objects are formed compared to the case without radiative feedback. We also find that the mass growth of secondary objects is mildly suppressed due to the effect of their radiative feedback. However, their mass growth also depends on where they form in the disc and on their subsequent interactions, such that their final masses are not drastically different from the case without radiative feedback. We find that the masses of secondary objects formed by disc fragmentation are from a few MJ to a few 0.1 M⊙. Planets formed by fragmentation tend to be ejected from the disc. We conclude that planetary-mass objects on wide orbits (wide-orbit planets) are unlikely to form by disc fragmentation. Nevertheless, disc fragmentation may be a significant source of free-floating planets and brown dwarfs.

  6. On the fragmentation boundary in magnetized self-gravitating discs

    NASA Astrophysics Data System (ADS)

    Forgan, Duncan; Price, Daniel J.; Bonnell, Ian

    2017-04-01

    We investigate the role of magnetic fields in the fragmentation of self-gravitating discs using 3D global ideal magnetohydrodynamic simulations performed with the PHANTOM smoothed particle hydrodynamics code. For initially toroidal fields, we find two regimes. In the first, where the cooling time is greater than five times the dynamical time, magnetic fields reduce spiral density wave amplitudes, which in turn suppresses fragmentation. This is the case even if the magnetic pressure is only a 10th of the thermal pressure. The second regime occurs when the cooling time is sufficiently short that magnetic fields cannot halt fragmentation. We find that magnetized discs produce more massive fragments, due to both the additional pressure exerted by the magnetic field and the additional angular momentum transport induced by Maxwell stresses. The fragments are confined to a narrower range of initial semimajor axes than those in unmagnetized discs. The orbital eccentricity and inclination distributions of unmagnetized and magnetized disc fragments are similar. Our results suggest that the fragmentation boundary could be at cooling times a factor of 2 lower than predicted by purely hydrodynamical models.

  7. Mitochondrial fragmentation in excitotoxicity requires ROCK activation.

    PubMed

    Martorell-Riera, Alejandro; Segarra-Mondejar, Marc; Reina, Manuel; Martínez-Estrada, Ofelia M; Soriano, Francesc X

    2015-01-01

    Mitochondria morphology constantly changes through fission and fusion processes that regulate mitochondrial function, and it therefore plays a prominent role in cellular homeostasis. Cell death progression is associated with mitochondrial fission. Fission is mediated by the mainly cytoplasmic Drp1, which is activated by different post-translational modifications and recruited to mitochondria to perform its function. Our research and other studies have shown that in the early moments of excitotoxic insult Drp1 must be nitrosylated to mediate mitochondrial fragmentation in neurons. Nonetheless, mitochondrial fission is a multistep process in which filamentous actin assembly/disassembly and myosin-mediated mitochondrial constriction play prominent roles. Here we establish that in addition to nitric oxide production, excitotoxicity-induced mitochondrial fragmentation also requires activation of the actomyosin regulator ROCK. Although ROCK1 has been shown to phosphorylate and activate Drp1, experiments using phosphor-mutant forms of Drp1 in primary cortical neurons indicate that in excitotoxic conditions, ROCK does not act directly on Drp1 to mediate fission, but may act on the actomyosin complex. Thus, these data indicate that a wider range of signaling pathways than those that target Drp1 are amenable to be inhibited to prevent mitochondrial fragmentation as therapeutic option.

  8. High Resolution Fabry-Perot Spectroscopy Of Comet Fragments 73P/ Schwassmann-Wachmann 3-B,C

    NASA Astrophysics Data System (ADS)

    Oliversen, Ronald J.; Mierkiewicz, E. J.; Morgenthaler, J. P.; Harris, W. M.; Kokorowski, M.; Kidder, A.; Schnackenberg, T.; Carpena Nunez, J.; Hall, T.; Haffner, L.

    2006-09-01

    In May 2006, comet 73P/Schwassmann-Wachmann 3 (SW3) made a spectacular close approach to the Earth. During its 1995 apparition, the comet fragmented into several pieces. One of the brighter components, SW3-B, fragmented into dozens of pieces during the 2006 apparition while another bright fragment, SW3-C did not. Understanding the difference between these two fragments will contribute significantly to our understanding of cometary interiors. We performed observations of SW3-B and SW3-C from Kitt Peak using the Fabry-Perot spectrometers at the McMath-Pierce (MMP) telescope from April 29 - May 10 and at the Wisconsin Hydrogen Alpha Mapper (WHαM) from May 1 - 6, 2006. This period is significant due to its proximity to perigee, overlap with complementary observations, and coincidence with the onset and decline-phase of a major outburst/fragmentation event from SW3-B. The MMP and WHAM Fabry-Perot spectrometers made high resolution measurements of [O I] and NH2 emissions near 6300 Å at δV = 5 km/s and 12 km/s with 4.5 arcmin and 1 degree fields of view, respectively. Many of the spectra separate the cometary and terrestrial [O I] lines and allow determination of water production rates. We report the preliminary analysis of these data, including discussion of the radial distribution of emissions, a comparison activity levels between the two fragments, and a comparison with complementary production rate measurements made over the same period. In addition, following the SW3-B May 9 outburst, H20+ measurements near 6200 Å were made to map the acceleration of water ions near the head and down the tail.

  9. Quantification of Uncertainties due to 235,238U, 239,240,241Pu and Fission Products Nuclear Data Uncertainties for a PWR Fuel Assembly

    NASA Astrophysics Data System (ADS)

    da Cruz, D. F.; Rochman, D.; Koning, A. J.

    2014-04-01

    Uncertainty analysis on reactivity and discharged inventory for a typical PWR fuel element as a result of uncertainties in 235,238U, 239,240,241Pu, and fission products nuclear data was performed. The Total Monte-Carlo (TMC) method was applied using the deterministic transport code DRAGON. The nuclear data used in this study is from the JEFF-3.1 evaluations, with the exception of the nuclear data files for U, Pu and fission products isotopes, which are taken from the nuclear data library TENDL-2012. Results show that the calculated total uncertainty in keff (as result of uncertainties in nuclear data of the considered isotopes) is virtually independent on fuel burnp and amounts to 700 pcm. The uncertainties in inventory of the discharged fuel is dependent on the element considered and lies in the range 1-15% for most fission products, and is below 5% for the most important actinides.

  10. The combined fragmentation and systematic molecular fragmentation methods.

    PubMed

    Collins, Michael A; Cvitkovic, Milan W; Bettens, Ryan P A

    2014-09-16

    Conspectus Chemistry, particularly organic chemistry, is mostly concerned with functional groups: amines, amides, alcohols, ketones, and so forth. This is because the reactivity of molecules can be categorized in terms of the reactions of these functional groups, and by the influence of other adjacent groups in the molecule. These simple truths ought to be reflected in the electronic structure and electronic energy of molecules, as reactivity is determined by electronic structure. However, sophisticated ab initio quantum calculations of the molecular electronic energy usually do not make these truths apparent. In recent years, several computational chemistry groups have discovered methods for estimating the electronic energy as a sum of the energies of small molecular fragments, or small sets of groups. By decomposing molecules into such fragments of adjacent functional groups, researchers can estimate the electronic energy to chemical accuracy; not just qualitative trends, but accurate enough to understand reactivity. In addition, this has the benefit of cutting down on both computational time and cost, as the necessary calculation time increases rapidly with an increasing number of electrons. Even with steady advances in computer technology, progress in the study of large molecules is slow. In this Account, we describe two related "fragmentation" methods for treating molecules, the combined fragmentation method (CFM) and systematic molecular fragmentation (SMF). In addition, we show how we can use the SMF approach to estimate the energy and properties of nonconducting crystals, by fragmenting the periodic crystal structure into relatively small pieces. A large part of this Account is devoted to simple overviews of how the methods work. We also discuss the application of these approaches to calculating reactivity and other useful properties, such as the NMR and vibrational spectra of molecules and crystals. These applications rely on the ability of these

  11. β-Methylphenylethylamines: common fragmentation pathways with amphetamines in electrospray ionization collision-induced dissociation.

    PubMed

    Brown, David H; Hansson, Robert; Oosthuizen, Francois; Sumner, Nathan

    2016-01-01

    β-Methylphenylethylamines are positional isomers of amphetamines and have been discovered in sporting supplements. Although the fragmentation of the β-methylphenylethylamine and N-methyl-β-methylphenylethylamine in gas chromatography-electron ionization-mass spectrometry (GC-EI-MS) systems is significantly different to their amphetamine and methylamphetamine isomers, under electrospray ionization commonly used in liquid chromatography-mass spectrometry (LC-MS) systems, the fragmentation of each of the isomeric pairs is almost identical. The similarities in fragmentation make it possible for the misidentification of the β-methylphenylethylamines as the illicit amphetamines. It is proposed that the similarities are due to a fragmentation pathway involving a common phenonium ion intermediate. By careful control of fragmentation energies in liquid chromatography-tandem mass spectrometry (LC-MS/MS) systems and/or close examination of the relative abundances of product ions formed by collision-induced dissociation (qualifier ratios), it is possible to distinguish the β-methylphenylethylamines from the amphetamines, even if significant retention time separation is not achieved. In liquid chromatography-electrospray ionization-quadrupole time of flight (LC-ESI-QTOF) systems the mass spectra of the β-methylphenylethylamines are identical to their amphetamine isomers. In such systems, retention time separation of the isomers is critical to avoid misidentification. During this study β-methylphenylethylamine and N-methyl-β-methylphenylethylamine have been identified in commercially available sporting supplements and oral fluid samples taken during the course of road-side drugs-in-drivers and workplace testing programmes. Copyright © 2015 John Wiley & Sons, Ltd.

  12. Estimation of velocity perturbations in satellite fragmentation events

    NASA Technical Reports Server (NTRS)

    Tan, Arjun

    1989-01-01

    The magnitude, variance and directionality of the velocity perturbations of the fragments of a satellite can shed valuable information regarding the nature and intensity of the fragmentation. Up until now, the only method used to calculate the three orthogonal components of the velocity change consisted of inverting the process of evaluating the changes in the orbital elements of the fragments due to velocity perturbing forces. But the traditional method failed in five different cases: (1) when the parent satellite's orbit was circular; (2) and (3) when the true anomaly of the parent was either 0 deg or 180 deg; and (4) and (5) when the argument of latitude of the parent was 90 deg or 270 deg. Described here is a new method of calculating the velocity perturbations which is free from the shortcomings of the traditional method and could be used in all occasions, provided the fragmentation data and the orbital elements data are consistent with one another.

  13. Ordered fragmentation of oxide thin films at submicron scale

    PubMed Central

    Guo, L.; Ren, Y.; Kong, L. Y.; Chim, W. K.; Chiam, S. Y.

    2016-01-01

    Crack formation is typically undesirable as it represents mechanical failure that compromises strength and integrity. Recently, there have also been numerous attempts to control crack formation in materials with the aim to prevent or isolate crack propagation. In this work, we utilize fragmentation, at submicron and nanometre scales, to create ordered metal oxide film coatings. We introduce a simple method to create modified films using electroplating on a prepatterned substrate. The modified films undergo preferential fragmentation at locations defined by the initial structures on the substrate, yielding ordered structures. In thicker films, some randomness in the characteristic sizes of the fragments is introduced due to competition between crack propagation and crack creation. The method presented allows patterning of metal oxide films over relatively large areas by controlling the fragmentation process. We demonstrate use of the method to fabricate high-performance electrochromic structures, yielding good coloration contrast and high coloration efficiency. PMID:27748456

  14. Fragment Molecular Orbital Nonadiabatic Molecular Dynamics for Condensed Phase Systems.

    PubMed

    Nebgen, Ben; Prezhdo, Oleg V

    2016-09-15

    A method for efficiently simulating nonadiabatic molecular dynamics (NAMD) of nanoscale and condensed phase systems is developed and tested. The electronic structure, including force and nonadiabatic coupling, are obtained with the fragment molecular orbital (FMO) approximation, which provides significant computational savings by splitting the system into fragments and computing electronic properties of each fragment subject to the external field due to other all other fragments. The efficiency of the developed technique is demonstrated by studying the effect of explicit solvent molecules on excited state relaxation in the Fe(CO)4 complex. The relaxation in the gas phase occurs on a 50 fs time scale, which is in excellent agreement with previously recorded femtosecond pump-probe spectroscopy. Adding a solvation shell of ethanol molecules to the simulation results in an increase in the excited state lifetime to 100 fs, in agreement with recent femtosecond X-ray spectroscopy measurements.

  15. Research on the fragment impact resistance of a composite mast

    NASA Astrophysics Data System (ADS)

    Zhang, Wei; Wu, Chao; Yang, Wenshan; Xu, Shanshan; Ren, Shaofei

    2011-09-01

    Due to the unique structural mode and material property of a composite sandwich plate, related research such as fragment impact resistance of a composite mast is short of publication and urgent in this field. In this paper, the commonly accepted sandwich core board theory was modified. Damage caused by a fragment attack was simulated onto a sandwich plate model built with solid and shell elements. It was shown that shear failure and vast matrix cracking are the main reasons for outer coat damage, and tension failure and partial matrix cracking are the cause for inner coat damage. Additionally, according to complexities in actual sea battles, different work conditions of missile attacks were set. Ballistic limit values of different fragment sizes were also obtained, which provides references for enhancing the fragment impact resistance of a composite mast.

  16. Fragmentation and ablation during entry

    SciTech Connect

    Canavan, G.H.

    1997-09-01

    This note discusses objects that both fragment and ablate during entry, using the results of previous reports to describe the velocity, pressure, and fragmentation of entering objects. It shows that the mechanisms used there to describe the breakup of non-ablating objects during deceleration remain valid for most ablating objects. It treats coupled fragmentation and ablation during entry, building on earlier models that separately discuss the entry of objects that are hard, whose high heat of ablation permits little erosion, and those who are strong whose strength prevents fragmentation, which are discussed in ``Radiation from Hard Objects,`` ``Deceleration and Radiation of Strong, Hard, Asteroids During Atmospheric Impact,`` and ``Meteor Signature Interpretation.`` This note provides a more detailed treatment of the further breakup and separation of fragments during descent. It replaces the constraint on mass per unit area used earlier to determine the altitude and magnitude of peak power radiation with a detailed analytic solution of deceleration. Model predictions are shown to be in agreement with the key features of numerical calculations of deceleration. The model equations are solved for the altitudes of maximum radiation, which agree with numerical integrations. The model is inverted analytically to infer object size and speed from measurements of peak power and altitude to provide a complete model for the approximate inversion of meteor data.

  17. Analyzing internal fragmentation of electrosprayed ubiquitin ions during beam-type collisional dissociation.

    PubMed

    Durbin, Kenneth R; Skinner, Owen S; Fellers, Ryan T; Kelleher, Neil L

    2015-05-01

    Gaseous fragmentation of intact proteins is multifaceted and can be unpredictable by current theories in the field. Contributing to the complexity is the multitude of precursor ion states and fragmentation channels. Terminal fragment ions can be re-fragmented, yielding product ions containing neither terminus, termed internal fragment ions. In an effort to better understand and capitalize upon this fragmentation process, we collisionally dissociated the high (13+), middle (10+), and low (7+) charge states of electrosprayed ubiquitin ions. Both terminal and internal fragmentation processes were quantified through step-wise increases of voltage potential in the collision cell. An isotope fitting algorithm matched observed product ions to theoretical terminal and internal fragment ions. At optimal energies for internal fragmentation of the 10+, nearly 200 internal fragments were observed; on average each of the 76 residues in ubiquitin was covered by 24.1 internal fragments. A pertinent finding was that formation of internal ions occurs at similar energy thresholds as terminal b- and y-ion types in beam-type activation. This large amount of internal fragmentation is frequently overlooked during top-down mass spectrometry. As such, we present several new approaches to visualize internal fragments through modified graphical fragment maps. With the presented advances of internal fragment ion accounting and visualization, the total percentage of matched fragment ions increased from approximately 40% to over 75% in a typical beam-type MS/MS spectrum. These sequence coverage improvements offer greater characterization potential for whole proteins with no needed experimental changes and could be of large benefit for future high-throughput intact protein analysis.

  18. Analyzing Internal Fragmentation of Electrosprayed Ubiquitin Ions During Beam-Type Collisional Dissociation

    NASA Astrophysics Data System (ADS)

    Durbin, Kenneth R.; Skinner, Owen S.; Fellers, Ryan T.; Kelleher, Neil L.

    2015-05-01

    Gaseous fragmentation of intact proteins is multifaceted and can be unpredictable by current theories in the field. Contributing to the complexity is the multitude of precursor ion states and fragmentation channels. Terminal fragment ions can be re-fragmented, yielding product ions containing neither terminus, termed internal fragment ions. In an effort to better understand and capitalize upon this fragmentation process, we collisionally dissociated the high (13+), middle (10+), and low (7+) charge states of electrosprayed ubiquitin ions. Both terminal and internal fragmentation processes were quantified through step-wise increases of voltage potential in the collision cell. An isotope fitting algorithm matched observed product ions to theoretical terminal and internal fragment ions. At optimal energies for internal fragmentation of the 10+, nearly 200 internal fragments were observed; on average each of the 76 residues in ubiquitin was covered by 24.1 internal fragments. A pertinent finding was that formation of internal ions occurs at similar energy thresholds as terminal b- and y-ion types in beam-type activation. This large amount of internal fragmentation is frequently overlooked during top-down mass spectrometry. As such, we present several new approaches to visualize internal fragments through modified graphical fragment maps. With the presented advances of internal fragment ion accounting and visualization, the total percentage of matched fragment ions increased from approximately 40% to over 75% in a typical beam-type MS/MS spectrum. These sequence coverage improvements offer greater characterization potential for whole proteins with no needed experimental changes and could be of large benefit for future high-throughput intact protein analysis.

  19. Analyzing Internal Fragmentation of Electrosprayed Ubiquitin Ions During Beam-Type Collisional Dissociation

    PubMed Central

    Durbin, Kenneth R.; Skinner, Owen S.; Fellers, Ryan T.; Kelleher, Neil L.

    2015-01-01

    Gaseous fragmentation of intact proteins is multifaceted and can be unpredictable by current theories in the field. Contributing to the complexity is the multitude of precursor ion states and fragmentation channels. Terminal fragment ions can be re-fragmented, yielding product ions containing neither terminus, termed internal fragment ions. In an effort to better understand and capitalize upon this fragmentation process, we collisionally dissociated the high (13+), middle (10+), and low (7+) charge states of electrosprayed ubiquitin ions. Both terminal and internal fragmentation processes were quantified through step-wise increases of voltage potential in the collision cell. An isotope fitting algorithm matched observed product ions to theoretical terminal and internal fragment ions. At optimal energies for internal fragmentation of the 10+, nearly 200 internal fragments were observed; on average each of the 76 residues in ubiquitin was covered by 24.1 internal fragments. A pertinent finding was that formation of internal ions occurs at similar energy thresholds as terminal b- and y-ion types in beam-type activation. This large amount of internal fragmentation is frequently overlooked during top-down mass spectrometry. As such, we present several new approaches to visualize internal fragments through modified graphical fragment maps. With the presented advances of internal fragment ion accounting and visualization, the total percentage of matched fragment ions increased from approximately 40% to over 75% in a typical beam-type MS/MS spectrum. These sequence coverage improvements offer greater characterization potential for whole proteins with no needed experimental changes and could be of large benefit for future high-throughput intact protein analysis. PMID:25716753

  20. Activation of Prn-p gene and stable transfection of Prn-p cDNA in leukemia MEL and neuroblastoma N2a cells increased production of PrP(C) but not prevented DNA fragmentation initiated by serum deprivation.

    PubMed

    Gougoumas, Dimitrios D; Vizirianakis, Ioannis S; Triviai, Ioanna N; Tsiftsoglou, Asterios S

    2007-05-01

    Prion protein (PrP(C)) via its isoform PrP(SC) is involved in the pathogenesis of transmissible spongiform encephalopathies (TSEs). We observed that murine erythroleukemia (MEL) cells arrested in phase G(1) undergo transcriptional activation of Prn-p gene. Here, we explored the potential role of activation of Prn-p gene and cytosolic accumulation of PrP(C) in growth arrest, differentiation, and apoptotic DNA fragmentation by stably transfecting MEL and N2a cells with Prn-p cDNA. Stably transfected MEL cells (clones # 6, 12, 20, 38, and 42) were assessed for growth and differentiation, while clones N2a13 and N2a8 of N2a cells for growth and apoptosis by flow cytometry using Annexin V and propidium iodide (PI). Our results indicate that (a) Induction of terminal differentiation of stably transfected MEL cells led to growth arrest, activation of Prn-p gene, concomitant expression of transfected Prn-p cDNA, suppression of bax gene, cytosolic accumulation of PrP(C), and DNA fragmentation. The latter was also induced in non-differentiated MEL cells growing under serum-free conditions; (b) similarly, serum deprivation promoted growth arrest, apoptosis/necrosis associated with DNA fragmentation in parental N2a and N2a13 cells that produced relative high level of PrP(C) and not PrP(SC). These data indicate that activation of Prn-p gene and expression of transfected Prn-p cDNA in cells of both hematopoietic and neuronal origin occurred concomitantly, and led to cytosolic accumulation of PrP(C) and DNA damage induced by serum deprivation. PrP(C) production failed to protect DNA fragmentation induced by serum deprivation. The question how does PrP(C) contribute to growth arrest and DNA fragmentation is discussed.

  1. Efficacy of a novel prebiotic and a commercial probiotic in reducing mortality and production losses due to cold stress/Escherichia coli challenge in broiler chickens

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Prebiotics consisting of resistant starch may alter intestinal ecology, thus modulating inflammation and increasing intestinal health through increased cecal production of short chain fatty acids. Probiotics may directly alter the intestinal microbiome resulting in the same effects. Trials 1, 2, and...

  2. Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides.

    PubMed

    Banerjee, Raja; Sudarslal, S; Ranganayaki, R S; Raghothama, S

    2011-09-21

    Fragmentation behavior of two classes of cyclodepsipeptides, isariins and isaridins, obtained from the fungus Isaria, was investigated in the presence of different metal ions using multistage tandem mass spectrometry (MS(n)) with collision induced dissociation (CID) and validated by NMR spectroscopy. During MS(n) process, both protonated and metal-cationized isariins generated product ions belonging to the identical 'b-ion' series, exhibiting initial backbone cleavage explicitly at the β-ester bond. Fragmentation behavior for the protonated and metal-cationized acyclic methyl ester derivative of isariins was very similar. On the contrary, isaridins during fragmentation produced ions belonging to the 'b' or/and the 'y' ion series depending on the nature of interacting metal ions, due to initial backbone cleavages at the α-ester linkage or/and at a specific amide linkage. Interestingly, independent of the nature of the interacting metal ions, the product ions formed from the acyclic methyl ester derivative of isaridins belonged only to the 'y-type'. Complementary NMR data showed that, while all metal ions were located around the β-ester group of isariins, the metal ion interacting sites varied across the backbone for isaridins. Combined MS and NMR data suggest that the different behavior in sequence specific charge-driven fragmentation of isariins and isaridins is predetermined because of the constituent β-hydroxy acid residue in isariins and the cis peptide bond in isaridins.

  3. Formation of Prestellar Cores via Non-Isothermal Gas Fragmentation

    NASA Astrophysics Data System (ADS)

    Anathpindika, S.

    2015-02-01

    Sheet-like clouds are common in turbulent gas and perhaps form via collisions between turbulent gas flows. Having examined the evolution of an isothermal shocked slab in an earlier contribution, in this work we follow the evolution of a sheet-like cloud confined by (thermal) pressure and gas in it is allowed to cool. The extant purpose of this endeavour is to study the early phases of core-formation. The observed evolution of this cloud supports the conjecture that molecular clouds themselves are three-phase media (comprising viz. a stable cold and warm medium, and a third thermally unstable medium), though it appears, clouds may evolve in this manner irrespective of whether they are gravitationally bound. We report, this sheet fragments initially due to the growth of the thermal instability (TI) and some fragments are elongated, filament-like. Subsequently, relatively large fragments become gravitationally unstable and sub-fragment into smaller cores. The formation of cores appears to be a three stage process: first, growth of the TI leads to rapid fragmentation of the slab; second, relatively small fragments acquire mass via gas-accretion and/or merger and third, sufficiently massive fragments become susceptible to the gravitational instability and sub-fragment to form smaller cores. We investigate typical properties of clumps (and smaller cores) resulting from this fragmentation process. Findings of this work support the suggestion that the weak velocity field usually observed in dense clumps and smaller cores is likely seeded by the growth of dynamic instabilities. Simulations were performed using the smooth particle hydrodynamics algorithm.

  4. Quark fragmentation functions in NJL-jet model

    NASA Astrophysics Data System (ADS)

    Bentz, Wolfgang; Matevosyan, Hrayr; Thomas, Anthony

    2014-09-01

    We report on our studies of quark fragmentation functions in the Nambu-Jona-Lasinio (NJL) - jet model. The results of Monte-Carlo simulations for the fragmentation functions to mesons and nucleons, as well as to pion and kaon pairs (dihadron fragmentation functions) are presented. The important role of intermediate vector meson resonances for those semi-inclusive deep inelastic production processes is emphasized. Our studies are very relevant for the extraction of transverse momentum dependent quark distribution functions from measured scattering cross sections. We report on our studies of quark fragmentation functions in the Nambu-Jona-Lasinio (NJL) - jet model. The results of Monte-Carlo simulations for the fragmentation functions to mesons and nucleons, as well as to pion and kaon pairs (dihadron fragmentation functions) are presented. The important role of intermediate vector meson resonances for those semi-inclusive deep inelastic production processes is emphasized. Our studies are very relevant for the extraction of transverse momentum dependent quark distribution functions from measured scattering cross sections. Supported by Grant in Aid for Scientific Research, Japanese Ministry of Education, Culture, Sports, Science and Technology, Project No. 20168769.

  5. Fragmentation of DNA by sonication.

    PubMed

    Sambrook, Joseph; Russell, David W

    2006-09-01

    INTRODUCTIONDNA fragmentation is often necessary prior to library construction or subcloning for DNA sequencing. This protocol describes a method for DNA fragmentation by sonication. During sonication, DNA samples are subjected to hydrodynamic shearing by exposure to brief periods of sonication. DNA that has been sonicated for excessive periods of time is extremely difficult to clone. Most sonicators will not shear DNA to a size of less than 300-500 bp, and it is tempting to continue sonication until the entire DNA population has been reduced in size. However, the yield of subclones is usually greater if sonication is stopped when the fragments of the target DNA first reach a size of ~700 bp.

  6. DNA Oligonucleotide Fragment Ion Rearrangements Upon Collision-Induced Dissociation

    NASA Astrophysics Data System (ADS)

    Harper, Brett; Neumann, Elizabeth K.; Solouki, Touradj

    2015-08-01

    Collision-induced dissociation (CID) of m/z-isolated w type fragment ions and an intact 5' phosphorylated DNA oligonucleotide generated rearranged product ions. Of the 21 studied w ions of various nucleotide sequences, fragment ion sizes, and charge states, 18 (~86%) generated rearranged product ions upon CID in a Synapt G2-S HDMS (Waters Corporation, Manchester, England, UK) ion mobility-mass spectrometer. Mass spectrometry (MS), ion mobility spectrometry (IMS), and theoretical modeling data suggest that purine bases can attack the free 5' phosphate group in w type ions and 5' phosphorylated DNA to generate sequence permuted [phosphopurine]- fragment ions. We propose and discuss a potential mechanism for generation of rearranged [phosphopurine]- and complementary y-B type product ions.

  7. Carbon Fragmentation Cross Sections for Hadrontherapy and Space Radiation Protection

    NASA Astrophysics Data System (ADS)

    De Napoli, M.; Agodi, C.; Cirrone, G. A. P.; Cuttone, G.; Nicolosi, D.; Pandola, L.; Raciti, G.; Romano, F.; Sardina, D.; Scuderi, V.; Tropea, S.; Bondì, M.; Cappuzzello, F.; Carbone, D.; Cavallaro, M.

    2014-05-01

    Fragmentation reactions represent a serious complication in hadrontherapy and space radiation protection. In order to predict their effects, both reliable Monte Carlo codes and experimental data are needed. The shortage of precise measurements, especially of double differential cross sections, has triggered many dedicated experiments at relativistic energies. Aiming to explore the Fermi energy regime, as well, where different reaction mechanisms are involved, we measured the 12C fragmentation at 62 AMeV on a 12C and a 197Au target. A high granularity Si-CsI hodoscope allowed to identify the charge and the mass of detected fragments and measure their energy and emission angle. In this work we report the double differential cross sections for the production of different fragments as a function of the emission angle. Experimental results are compared with the GEANT-4 Monte Carlo predictions performed using two reaction models, the Quantum Molecular Dynamic and the Binary Light Ion Cascade.

  8. Measurement of [ital b] quark fragmentation fractions in the production of strange and light [ital B] mesons in p[bar p] collisions at [radical] (s) =1. 8 TeV

    SciTech Connect

    Blair, R.E.; Byrum, K.L.; Kovacs, E.; Kuhlmann, S.E.; LeCompte, T.; Nodulman, L. ); Breccia, L.; Brunetti, R.; Deninno, M.; Fiori, I.; Mazzanti, P. ); Behrends, S.; Bensinger, J.; Blocker, C.; Kirk, M.; Kirsch, L.; Lamoureux, J.I.; Niu, H. ); Bonushkin, Y.; Hauser, J.; Lindgren, M. ); Ashmanskas, W.; Berryhill, J.; Contreras, M.; Culbertson, R.; Grosso-Pilcher, C.; Nakaya, T. ); Benjamin, D.; Cronin-Hennessy, D.; Dittmann, J.R.; Goshaw, A.T.; Khazins, D.; Kowald, W.; Oh, S.H. ); Albrow, M.G.; Atac, M.; Beretvas, A.; Berge, J.P.; Biery, K.; Binkley, M.; Bu

    1999-11-01

    A new technique to measure the ratio of [ital b] quark fragmentation fractions in p[bar p] collisions is described. Using a 70-pb[sup [minus]1] sample of low-mass dimuon trigger data recorded with the Collider Detector at Fermilab, we identify [ital B] mesons by observing the double semileptonic decays b[r arrow]c[mu]X with c[r arrow]s[mu]X. By counting the numbers of K[sup [asterisk

  9. Production of photocurrent due to intermediate-to-conduction-band transitions: a demonstration of a key operating principle of the intermediate-band solar cell.

    PubMed

    Martí, A; Antolín, E; Stanley, C R; Farmer, C D; López, N; Díaz, P; Cánovas, E; Linares, P G; Luque, A

    2006-12-15

    We present intermediate-band solar cells manufactured using quantum dot technology that show for the first time the production of photocurrent when two sub-band-gap energy photons are absorbed simultaneously. One photon produces an optical transition from the intermediate-band to the conduction band while the second pumps an electron from the valence band to the intermediate-band. The detection of this two-photon absorption process is essential to verify the principles of operation of the intermediate-band solar cell. The phenomenon is the cornerstone physical principle that ultimately allows the production of photocurrent in a solar cell by below band gap photon absorption, without degradation of its output voltage.

  10. Critical Climate-Sensitive and Important Grain-Producing Regions: Grain Production/Yield Variations Due to Climate Fluctuations. Volume 1

    NASA Technical Reports Server (NTRS)

    Welker, J. E.

    2004-01-01

    Ideally, the Crop Country Inventory, CCI, is a methodology for the pre-harvest prediction of large variations in a country s crop production. This is accomplished by monitoring the historical climatic fluctuations, especially during the crop calendar period, in a climate sensitive large crop production region or sub-country, rather than the entire country. The argument can be made that the climatic fluctuations in the climatic sensitive region are responsible for the major annual crop country variations and that the remainder of the country, without major climatic fluctuations for a given year, can be assumed to be a steady-state crop producer. The principal data set that has been used is the Global Climate Mode (GCM) data from the National Center for Environmental Prediction (NCEP), taken over the last half century. As a test of its accuracy, GCM data can and has been correlated with the actual meteorological station data at the station site.

  11. HZEFRG1 - SEMIEMPIRICAL NUCLEAR FRAGMENTATION MODEL

    NASA Technical Reports Server (NTRS)

    Townsend, L. W.

    1994-01-01

    The high charge and energy (HZE), Semiempirical Nuclear Fragmentation Model, HZEFRG1, was developed to provide a computationally efficient, user-friendly, physics-based program package for generating nuclear fragmentation databases. These databases can then be used in radiation transport applications such as space radiation shielding and dosimetry, cancer therapy with laboratory heavy ion beams, and simulation studies of detector design in nuclear physics experiments. The program provides individual element and isotope production cross sections for the breakup of high energy heavy ions by the combined nuclear and Coulomb fields of the interacting nuclei. The nuclear breakup contributions are estimated using an energy-dependent abrasion-ablation model of heavy ion fragmentation. The abrasion step involves removal of nucleons by direct knockout in the overlap region of the colliding nuclei. The abrasions are treated on a geometric basis and uniform spherical nuclear density distributions are assumed. Actual experimental nuclear radii obtained from tabulations of electron scattering data are incorporated. Nuclear transparency effects are included by using an energy-dependent, impact-parameter-dependent average transmission factor for the projectile and target nuclei, which accounts for the finite mean free path of nucleons in nuclear matter. The ablation step, as implemented by Bowman, Swiatecki, and Tsang (LBL report no. LBL-2908, July 1973), was treated as a single-nucleon emission for every 10 MeV of excitation energy. Fragmentation contributions from electromagnetic dissociation (EMD) processes, arising from the interacting Coulomb fields, are estimated by using the Weiszacker-Williams theory, extended to include electric dipole and electric quadrupole contributions to one-nucleon removal cross sections. HZEFRG1 consists of a main program, seven function subprograms, and thirteen subroutines. Each is fully commented and begins with a brief description of its

  12. Analytical substantiation of the safety of modern water-development works and characteristics of consideration of effects due to production equipment during an earthquake

    SciTech Connect

    Mgalobelov, Yu. B.; Deineko, A. V.

    2011-01-15

    A modern approach is proposed for analytical investigation of the stress-strain state, strength, and stability of water-development works. Actual trends in the refinement of analytical investigations are noted: incorporation of parallel-calculation technology, integration of analytical programs and automated design systems, development of structural analyses, etc. A procedure for consideration of the influence exerted by massive production equipment on the stress-strain state of a structure DURING a seismic event is examined.

  13. Numerical study of summertime dynamical and physical changes in the southern South China Sea due to the monsoons and its impacts on primary productivity

    NASA Astrophysics Data System (ADS)

    Daryabor, Farshid; Abu Samah, Azizan; Hai Ooi, See

    2016-04-01

    The ecosystem off the east coast of Peninsular Malaysia is controlled by multiple physical processes during the monsoons (winter and summer) , including the air-sea interaction (such as net heat and surface freshwater fluxes), the small-scale eddies off the southern South China Sea (SSCS), and the monsoon wind induced coastal upwelling. Using high-resolution Regional Ocean Modeling System (ROMS), in-situ observations and remote sensing data, this paper attempts to study the hydrodynamics of the shelf and coastal processes as well as thermohaline circulation in response to changes in the hydrological seasonal cycle especially in the summer monsoon. In addition, we investigate its impacts on the spatial patterns of chlorophyll biomass which acts as a proxy for primary productivity in the SSCS. This study looks into not only the detailed small-scale-circulation such as localized eddies but also the link between the southern South China Sea and the Indian Ocean through the Straits of Malacca and the Java Sea. The flow through the Strait of Malacca and the Java Sea is not only important for navigational purpose but also has an influence on the seasonal spatial and temporal variations of primary productivity in the region. Keywords: southern South China Sea; summer monsoon; coastal upwelling; primary productivity

  14. Correlation between Asian Dust and Specific Radioactivities of Fission Products Included in Airborne Samples in Tokushima, Shikoku Island, Japan, Due to the Fukushima Nuclear Accident

    SciTech Connect

    Sakama, M.; Nagano, Y.; Kitade, T.; Shikino, O.; Nakayama, S.

    2014-06-15

    Radioactive fission product {sup 131}I released from the Fukushima Daiichi Nuclear Power Plants (FD-NPP) was first detected on March 23, 2011 in an airborne aerosol sample collected at Tokushima, Shikoku Island, located in western Japan. Two other radioactive fission products, {sup 134}Cs and {sup 137}Cs were also observed in a sample collected from April 2 to 4, 2011. The maximum specific radioactivities observed in this work were about 2.5 to 3.5 mBq×m{sup -3} in a airborne aerosol sample collected on April 6. During the course of the continuous monitoring, we also made our first observation of seasonal Asian Dust and those fission products associated with the FDNPP accident concurrently from May 2 to 5, 2011. We found that the specific radioactivities of {sup 134}Cs and {sup 137}Cs decreased drastically only during the period of Asian Dust. And also, it was found that this trend was very similar to the atmospheric elemental concentration (ng×m{sup -3}) variation of stable cesium ({sup 133}Cs) quantified by elemental analyses using our developed ICP-DRC-MS instrument.

  15. Clusters of DNA induced by ionizing radiation: formation of short DNA fragments. I. Theoretical modeling

    NASA Technical Reports Server (NTRS)

    Holley, W. R.; Chatterjee, A.

    1996-01-01

    We have developed a general theoretical model for the interaction of ionizing radiation with chromatin. Chromatin is modeled as a 30-nm-diameter solenoidal fiber comprised of 20 turns of nucleosomes, 6 nucleosomes per turn. Charged-particle tracks are modeled by partitioning the energy deposition between primary track core, resulting from glancing collisions with 100 eV or less per event, and delta rays due to knock-on collisions involving energy transfers >100 eV. A Monte Carlo simulation incorporates damages due to the following molecular mechanisms: (1) ionization of water molecules leading to the formation of OH, H, eaq, etc.; (2) OH attack on sugar molecules leading to strand breaks: (3) OH attack on bases; (4) direct ionization of the sugar molecules leading to strand breaks; (5) direct ionization of the bases. Our calculations predict significant clustering of damage both locally, over regions up to 40 bp and over regions extending to several kilobase pairs. A characteristic feature of the regional damage predicted by our model is the production of short fragments of DNA associated with multiple nearby strand breaks. The shapes of the spectra of DNA fragment lengths depend on the symmetries or approximate symmetries of the chromatin structure. Such fragments have subsequently been detected experimentally and are reported in an accompanying paper (B. Rydberg, Radiat, Res. 145, 200-209, 1996) after exposure to both high- and low-LET radiation. The overall measured yields agree well quantitatively with the theoretical predictions. Our theoretical results predict the existence of a strong peak at about 85 bp, which represents the revolution period about the nucleosome. Other peaks at multiples of about 1,000 bp correspond to the periodicity of the particular solenoid model of chromatin used in these calculations. Theoretical results in combination with experimental data on fragmentation spectra may help determine the consensus or average structure of the

  16. The Fragmentation of Literary Theory

    ERIC Educational Resources Information Center

    Howard, Jennifer

    2005-01-01

    Syllabi from some 20 colleges and universities were reviewed with prominent English and literature departments and a discussion was held with a number of professors who teach literary theory. It is suggested that devolution and fragmentation of theory might be a survival strategy, an adaptation to the new realties of academic institutions.

  17. Percolative fragmentation and spontaneous agglomeration

    SciTech Connect

    Hurt, R.; Davis, K.

    1999-03-01

    Captive particle imaging experiments were performed on over 200 coal and char particles in the pulverized size range from four coals of various rank at oxygen concentration from 3--19 mol% and at gas temperatures of about 1250 K. Despite wide variations in single-particle behavior, the data set reveals two clear trends that provide new information on the nature of char combustion. First, the low-rank coal chars are observed to maintain their high reactivity through the late stages of combustion, thus avoiding the near-extinction events and long burnout tails observed for bituminous coal chars. Secondly, percolative fragmentation in the late stages of combustion is a rare event under these conditions. Some particles reach a percolation threshold rate in combustion, but typically undergo spontaneous agglomeration rather than liberation of the incipient fragments. It is concluded that percolative fragmentation behavior in the pulverized size range is determined not only by solid-phase connectivity, but also by a real competition between disruptive and cohesive forces present at the time of formation of the colloidal-sized incipient fragments.

  18. Controlled Dynamic Fragmentation of Ceramics

    DTIC Science & Technology

    2009-12-14

    mechanism determining ballistic impact performance of ceramic armors as well as reliability of gun barrels. This program, which was sponsored by the...Research Office Fragmentation is a key damage mechanism determining ballistic impact performance of ceramic armors as well as reliability of gun ...the defect distributions that were considered (Weibull, Gauss and Uniform) fall on a single universal curve. Sdf

  19. Nuclear energy release from fragmentation

    NASA Astrophysics Data System (ADS)

    Li, Cheng; Souza, S. R.; Tsang, M. B.; Zhang, Feng-Shou

    2016-08-01

    It is well known that binary fission occurs with positive energy gain. In this article we examine the energetics of splitting uranium and thorium isotopes into various numbers of fragments (from two to eight) with nearly equal size. We find that the energy released by splitting 230,232Th and 235,238U into three equal size fragments is largest. The statistical multifragmentation model (SMM) is applied to calculate the probability of different breakup channels for excited nuclei. By weighing the probability distributions of fragment multiplicity at different excitation energies, we find the peaks of energy release for 230,232Th and 235,238U are around 0.7-0.75 MeV/u at excitation energy between 1.2 and 2 MeV/u in the primary breakup process. Taking into account the secondary de-excitation processes of primary fragments with the GEMINI code, these energy peaks fall to about 0.45 MeV/u.

  20. Fission fragment driven neutron source

    DOEpatents

    Miller, Lowell G.; Young, Robert C.; Brugger, Robert M.

    1976-01-01

    Fissionable uranium formed into a foil is bombarded with thermal neutrons in the presence of deuterium-tritium gas. The resulting fission fragments impart energy to accelerate deuterium and tritium particles which in turn provide approximately 14 MeV neutrons by the reactions t(d,n).sup.4 He and d(t,n).sup.4 He.

  1. Fertilization Ability of Porcine Oocytes Reconstructed from Ooplasmic Fragments Produced and Characterized after Serial Centrifugations

    PubMed Central

    Viet LINH, Nguyen; KIKUCHI, Kazuhiro; NAKAI, Michiko; TANIHARA, Fuminori; NOGUCHI, Junko; KANEKO, Hiroyuki; DANG-NGUYEN, Thanh Quang; MEN, Nguyen Thi; VAN HANH, Nguyen; SOMFAI, Tamas; NGUYEN, Bui Xuan; NAGAI, Takashi; MANABE, Noboru

    2013-01-01

    Abstract Mitochondria are reported to be critical in in vitro maturation of oocytes and subsequent embryo development after fertilization, but their contribution for fertilization has not been investigated in detail. In the present study, we investigate the contribution of mitochondria to fertilization using reconstructed porcine oocytes by fusion of ooplasmic fragments produced by serial centrifugations (centri-fusion). Firstly, we evaluated the characteristics of ooplasmic fragments. Three types of fragments were obtained by centrifugation of porcine oocytes matured in vitro for 46 h: brownish (B), transparent (T) and large (L) fragments containing both B and T parts in a fragment. The production efficiencies of these types of fragments were 71.7, 91.0 and 17.8 fragments/100 oocytes, respectively. In experiments, L fragments were excluded because they contained both brownish and transparent components that were apparently intermediate between B and T fragments. Observations by confocal microscopy after staining with MitoTracker Red CMXRos® and transmission electron microscopy revealed highly condensed active mitochondria in B fragments in contrast to T fragments that contained only sparse organelles. We reconstructed oocytes by fusion of a karyoplast and two cytoplasts from B and T fragments (B and T oocytes, respectively). The B oocytes showed higher sperm penetration (95.8%) and male pronuclear formation rates (94.2%) by in vitro fertilization than T oocytes (66.7% and 50.0%, respectively). These results suggest that the active mitochondria in oocytes may be related to their ability for fertilization. PMID:23965685

  2. Double-dose β-glucan treatment in WSSV-challenged shrimp reduces viral replication but causes mortality possibly due to excessive ROS production.

    PubMed

    Thitamadee, Siripong; Srisala, Jiraporn; Taengchaiyaphum, Suparat; Sritunyalucksana, Kallaya

    2014-10-01

    In our research efforts to reduce the impact of white spot syndrome virus (WSSV) disease outbreaks in shrimp aquaculture, we studied the effect of β-glucan administration to activate the prophenoloxidase (proPO) enzymatic cascade prior to WSSV challenge. Injection of a single dose of β-glucan (5 μg/g) prior to WSSV challenge resulted in activation of the proPO system and reduced shrimp mortality (25-50%) when compared to controls (100%). By contrast, no significant reduction was observed using yellow head virus (YHV) in a similar protocol. We subsequently hypothesized that administration of a second dose of β-glucan after WSSV challenge might reduce shrimp mortality further. Surprisingly, the opposite occurred, and mortality of the WSSV-infected shrimp increased to 100% after the second β-glucan dose. Both immunofluorescence and RT-PCR assays revealed low WSSV levels in hemocytes of shrimp collected after the second dose of β-glucan administration, suggesting that the cause of increased mortality was unlikely to be increased WSSV replication. We found from measured phenoloxidase acitivity (PO) and H2O2 production that the higher mortality may have resulted from a combination of WSSV infection plus over-production of reactive oxygen species (ROS) stimulated by two doses of β-glucan. Thus, caution may be prudent in continuous or prolonged activation of the shrimp immune system by β-glucan administration lest it exacerbate shrimp mortality in the event of WSSV infection.

  3. Experimental Volcanology: Fragmentation and Permeability

    NASA Astrophysics Data System (ADS)

    Spieler, O.

    2005-12-01

    An increasing number of scientists design new experiments to analyse processes that control the dynamics of explosive eruptions. There research is mostly coupled to numerical models and aims toward its controlling parameters. The fragmentation process, its threshold and the speed of the fragmentation wave as well as the energy consumed by the fragmentation are some hot spots of the experimental volcanology. Analysing the fragmentation behaviour of volcaniclastics as close to the natural system as possible, we found a number of physical constrains. Identifying the porosity as determining factor of the threshold, we realised that neither threshold nor the speed of the fragmentation process are solely controlled by the rock density. The later results of the shock tube type apparatus lead to the analysis of the specific surface area and permeability as direct links to textural features. Permeability analysis performed in a modified shock tube type apparatus, show two clear, distinct trends for dome rock and pyroclastic samples. The specific surface determined by Argon sorbtion (BET) as well as textural features of pumices from Campi Flegrei, Montserrat and Krakatoa (1883) give in contrary evidence of a more complex story. Large spherical, or ellipsoidal bubbles around fractured crystals prove that the high permeability of the pumice has partially developed after the fixing of the bubble size distribution. This puts up the question, if permeability measurements on pyroclastic samples reveal relevant numbers! The surface tension controlled 'self sealing' behaviour of surfaces from foaming obsidian hinders in situ measurements. Close textural investigations will have to clarify how the 'post process' samples deviate from the syneruptive conduit filling.

  4. ["Eosinophilia-myalgia" syndrome due to L-tryptophan containing products. Cooperative evaluation of French Regional Centers of Pharmacovigilance. Analysis of 24 cases].

    PubMed

    Castot, A; Bidault, I; Bournerias, I; Carlier, P; Efthymiou, M L

    1991-01-01

    By November 17, 1989, the MMWR published the 154 first reports of a syndrome consisting of myalgia and eosinophilia (EMS), occurring with the consumption of L-tryptophan containing products (L-TrpCp) and which might represent a new clinical entity. To standardize reporting over the country, the CDC of Atlanta developed the following case definition: 1) a peripheral blood total eosinophil count of more than 1 x 10(9) cells per liter 2) generalized myalgia sufficiently severe to affect a patient's ability to pursue daily activities 3) the exclusion of infections or neoplastic conditions. The FDA then, announced its intention to seek a nationwide recall of all tryptophan containing products, followed by other european countries (UK, Germany, France). In France, a first decree (January 4th 1990) completed by a decree on May 11th confirms this decision for one year. This measure did not concern the medicinal products or some dietary supplements for newborn or young children. Since December 11th, 1989, 24 cases have been reported to the Regional Adverse Drug Reaction Monitoring Centres in France. These cases share the same features as the cases notified previously in the USA: overrepresentation of females, no relationship with the time and the daily intake, clinical similarities to the Shulman syndrome, and unknown prognosis. Now, more than one year after the onset of this illness, it seems that discontinuation of the ingestion of L-TrpCp can resolve or improve the symptoms in most cases, but sometimes the syndrome can persist. The causal relationship between the ingestion of L-TrpCp and this syndrome has been established. Whatever the mechanism for the development of EMS among tryptophan users remains unclear, as well as the role of eosinophilia and the factors for fibroblast proliferation. The epidemic emergence of this syndrome in July 89 raises the possibility of the contamination of tryptophan during the manufacturing process. To confirm this hypothesis, the same

  5. Modeling of rhythmic behavior in neutral lipid production due to continuous supply of limited nitrogen: mutual growth and lipid accumulation in microalgae.

    PubMed

    Tevatia, Rahul; Allen, James; Blum, Paul; Demirel, Yaşar; Black, Paul

    2014-10-01

    The relative effects of three precise nitrogen limitation regimes on green micro-algae were assessed using the Trebouxiophycean alga Coccomyxa subellipsoidea grown in a chemostatic bioreactor system. The data provides further evidence that growth and triglyceride (TAG) accumulation are concurrent and independently proportional to the degree of nitrogen limitation in algae. Additionally, TAG accumulation was observed to proceed via oscillations with respect to time and percent dry weight quantity. The predator-prey model was applied to fit the experimental data and to obtain the physiological significance of these oscillations. The results determine the conditions of maximum neutral lipid productivity with respect to nitrate stress and highlight an area of potential future research.

  6. Fragments

    ERIC Educational Resources Information Center

    Moreira, Claudio

    2008-01-01

    This performance autoethnography shows the author's struggle in finding his place, scholarship, voice, and body, into the academic setting. Mixing together memories of his lived experience with sugar cane workers, notes, and leftovers of different fieldworks, plus 6 years of life as grad student at the University of Illinois, the author looks for…

  7. Interactions between Fragmented Seagrass Canopies and the Local Hydrodynamics

    PubMed Central

    El Allaoui, Nazha; Colomer, Jordi; Soler, Marianna; Casamitjana, Xavier; Oldham, Carolyn

    2016-01-01

    The systematic creation of gaps within canopies results in fragmentation and the architecture of fragmented canopies differs substantially from non-fragmented canopies. Canopy fragmentation leads to spatial heterogeneity in hydrodynamics and therefore heterogeneity in the sheltering of canopy communities. Identifying the level of instability due to canopy fragmentation is important for canopies in coastal areas impacted by human activities and indeed, climate change. The gap orientation relative to the wave direction is expected to play an important role in determining wave attenuation and sheltering. Initially we investigated the effect of a single transversal gap within a canopy (i.e. a gap oriented perpendicular to the wave direction) on hydrodynamics, which was compared to fully vegetated canopies (i.e. no gaps) and also to bare sediment. The wave velocity increased with gap width for the two canopy densities studied (2.5% and 10% solid plant fraction) reaching wave velocities found over bare sediments. The turbulent kinetic energy (TKE) within the gap also increased, but was more attenuated by the adjacent vegetation than the wave velocity. As expected, denser canopies produced a greater attenuation of both the wave velocity and the turbulent kinetic energy within an adjacent gap, compared to sparse canopies. Using non-dimensional analysis and our experimental data, a parameterization for predicting TKE in a canopy gap was formulated, as a function of easily measured variables. Based on the experimental results, a fragmented canopy model was then developed to determine the overall mixing level in such canopies. The model revealed that canopies with large gaps present more mixing than canopies with small gaps despite having the same total gap area in the canopy. Furthermore, for the same total gap area, dense fragmented canopies provide more shelter than sparse fragmented canopies. PMID:27227321

  8. Detecting Fragmentation Extinction Thresholds for Forest Understory Plant Species in Peninsular Spain

    PubMed Central

    Rueda, Marta; Moreno Saiz, Juan Carlos; Morales-Castilla, Ignacio; Albuquerque, Fabio S.; Ferrero, Mila; Rodríguez, Miguel Á.

    2015-01-01

    Ecological theory predicts that fragmentation aggravates the effects of habitat loss, yet empirical results show mixed evidences, which fail to support the theory instead reinforcing the primary importance of habitat loss. Fragmentation hypotheses have received much attention due to their potential implications for biodiversity conservation, however, animal studies have traditionally been their main focus. Here we assess variation in species sensitivity to forest amount and fragmentation and evaluate if fragmentation is related to extinction thresholds in forest understory herbs and ferns. Our expectation was that forest herbs would be more sensitive to fragmentation than ferns due to their lower dispersal capabilities. Using forest cover percentage and the proportion of this percentage occurring in the largest patch within UTM cells of 10-km resolution covering Peninsular Spain, we partitioned the effects of forest amount versus fragmentation and applied logistic regression to model occurrences of 16 species. For nine models showing robustness according to a set of quality criteria we subsequently defined two empirical fragmentation scenarios, minimum and maximum, and quantified species’ sensitivity to forest contraction with no fragmentation, and to fragmentation under constant forest cover. We finally assessed how the extinction threshold of each species (the habitat amount below which it cannot persist) varies under no and maximum fragmentation. Consistent with their preference for forest habitats probability occurrences of all species decreased as forest cover contracted. On average, herbs did not show significant sensitivity to fragmentation whereas ferns were favored. In line with theory, fragmentation yielded higher extinction thresholds for two species. For the remaining species, fragmentation had either positive or non-significant effects. We interpret these differences as reflecting species-specific traits and conclude that although forest amount is of

  9. Detecting fragmentation extinction thresholds for forest understory plant species in peninsular Spain.

    PubMed

    Rueda, Marta; Moreno Saiz, Juan Carlos; Morales-Castilla, Ignacio; Albuquerque, Fabio S; Ferrero, Mila; Rodríguez, Miguel Á

    2015-01-01

    Ecological theory predicts that fragmentation aggravates the effects of habitat loss, yet empirical results show mixed evidences, which fail to support the theory instead reinforcing the primary importance of habitat loss. Fragmentation hypotheses have received much attention due to their potential implications for biodiversity conservation, however, animal studies have traditionally been their main focus. Here we assess variation in species sensitivity to forest amount and fragmentation and evaluate if fragmentation is related to extinction thresholds in forest understory herbs and ferns. Our expectation was that forest herbs would be more sensitive to fragmentation than ferns due to their lower dispersal capabilities. Using forest cover percentage and the proportion of this percentage occurring in the largest patch within UTM cells of 10-km resolution covering Peninsular Spain, we partitioned the effects of forest amount versus fragmentation and applied logistic regression to model occurrences of 16 species. For nine models showing robustness according to a set of quality criteria we subsequently defined two empirical fragmentation scenarios, minimum and maximum, and quantified species' sensitivity to forest contraction with no fragmentation, and to fragmentation under constant forest cover. We finally assessed how the extinction threshold of each species (the habitat amount below which it cannot persist) varies under no and maximum fragmentation. Consistent with their preference for forest habitats probability occurrences of all species decreased as forest cover contracted. On average, herbs did not show significant sensitivity to fragmentation whereas ferns were favored. In line with theory, fragmentation yielded higher extinction thresholds for two species. For the remaining species, fragmentation had either positive or non-significant effects. We interpret these differences as reflecting species-specific traits and conclude that although forest amount is of

  10. Long-term carbon loss in fragmented Neotropical forests.

    PubMed

    Pütz, Sandro; Groeneveld, Jürgen; Henle, Klaus; Knogge, Christoph; Martensen, Alexandre Camargo; Metz, Markus; Metzger, Jean Paul; Ribeiro, Milton Cezar; de Paula, Mateus Dantas; Huth, Andreas

    2014-10-07

    Tropical forests play an important role in the global carbon cycle, as they store a large amount of carbon (C). Tropical forest deforestation has been identified as a major source of CO2 emissions, though biomass loss due to fragmentation--the creation of additional forest edges--has been largely overlooked as an additional CO2 source. Here, through the combination of remote sensing and knowledge on ecological processes, we present long-term carbon loss estimates due to fragmentation of Neotropical forests: within 10 years the Brazilian Atlantic Forest has lost 69 (±14) Tg C, and the Amazon 599 (±120) Tg C due to fragmentation alone. For all tropical forests, we estimate emissions up to 0.2 Pg C y(-1) or 9 to 24% of the annual global C loss due to deforestation. In conclusion, tropical forest fragmentation increases carbon loss and should be accounted for when attempting to understand the role of vegetation in the global carbon balance.

  11. Energetics of glass fragmentation: Experiments on synthetic and natural glasses

    NASA Astrophysics Data System (ADS)

    Kolzenburg, S.; Russell, J. K.; Kennedy, L. A.

    2013-11-01

    Natural silicate glasses are an essential component of many volcanic rock types including coherent and pyroclastic rocks; they span a wide range of compositions, occur in diverse environments, and form under a variety of pressure-temperature conditions. In subsurface volcanic environments (e.g., conduits and feeders), melts intersect the thermodynamically defined glass transition temperature to form glasses at elevated confining pressures and under differential stresses. We present a series of room temperature experiments designed to explore the fundamental mechanical and fragmentation behavior of natural (obsidian) and synthetic glasses (Pyrex™) under confining pressures of 0.1-100 MPa. In each experiment, glass cores are driven to brittle failure under compressive triaxial stress. Analysis of the load-displacement response curves is used to quantify the storage of energy in samples prior to failure, the (brittle) release of elastic energy at failure, and the residual energy stored in the post-failure material. We then establish a relationship between the energy density within the sample at failure and the grain-size distributions (D-values) of the experimental products. The relationship between D-values and energy density for compressive fragmentation is significantly different from relationships established by previous workers for decompressive fragmentation. Compressive fragmentation is found to have lower fragmentation efficiency than fragmentation through decompression (i.e., a smaller change in D-value with increasing energy density). We further show that the stress storage capacity of natural glasses can be enhanced (approaching synthetic glasses) through heat treatment.

  12. Improving fragmentation of poorly fragmenting peptides and phosphopeptides during collision-induced dissociation by malondialdehyde modification of arginine residues.

    PubMed

    Leitner, Alexander; Foettinger, Alexandra; Lindner, Wolfgang

    2007-07-01

    Despite significant technological and methodological advancements in peptide sequencing by mass spectrometry, analyzing peptides that exhibit only poor fragmentation upon collision-induced dissociation (CID) remains a challenge. A major cause for unfavorable fragmentation is insufficient proton 'mobility' due to charge localization at strongly basic sites, in particular, the guanidine group of arginine. We have recently demonstrated that the conversion of the guanidine group of the arginine side chain by malondialdehyde (MDA) is a convenient tool to reduce the basicity of arginine residues and can have beneficial effects for peptide fragmentation. In the present work, we have focused on peptides that typically yield incomplete sequence information in CID-MS/MS experiments. Energy-resolved tandem MS experiments were carried out on angiotensins and arginine-containing phosphopeptides to study in detail the influence of the modification step on the fragmentation process. MDA modification dramatically improved the fragmentation behavior of peptides that exhibited only one or two dominant cleavages in their unmodified form. Neutral loss of phosphoric acid from phosphopeptides carrying phosphoserine and threonine residues was significantly reduced in favor of a higher abundance of fragment ions. Complementary experiments were carried out on three different instrumental platforms (triple-quadrupole, 3D ion trap, quadrupole-linear ion trap hybrid) to ascertain that the observation is a general effect.

  13. Small global effect on terrestrial net primary production due to increased fossil fuel aerosol emissions from East Asia during the last decade.

    NASA Astrophysics Data System (ADS)

    O'Sullivan, Michael; Rap, Alex; Reddington, Carly; Spracklen, Dominick; Buermann, Wolfgang

    2016-04-01

    The global terrestrial carbon sink has increased since the start of this century at a time of rapidly growing carbon dioxide emissions from fossil fuel burning. Here we test the hypothesis that increases in atmospheric aerosols from fossil fuel burning have increased the diffuse fraction of incoming solar radiation and the efficiency of photosynthesis leading to increased plant carbon uptake. Using a combination of atmospheric and biospheric models, we find that changes in diffuse light associated with fossil fuel aerosol emission accounts for only 2.8% of the increase in global net primary production (1.221 PgC/yr) over the study period 1998 to 2007. This relatively small global signal is however a result of large regional compensations. Over East Asia, the strong increase in fossil fuel emissions contributed nearly 70% of the increased plant carbon uptake (21 TgC/yr), whereas the declining fossil fuel aerosol emissions in Europe and North America contributed negatively (-16% and -54%, respectively) to increased plant carbon uptake. At global scale, we also find the CO2 fertilization effect on photosynthesis to be the dominant driver of increased plant carbon uptake, in line with previous studies. These results suggest that further research into alternative mechanisms by which fossil fuel emissions could increase carbon uptake, such as nitrogen deposition and carbon-nitrogen interactions, is required to better understand a potential link between the recent changes in fossil fuel emissions and terrestrial carbon uptake.

  14. A practical approach to estimate emission rates of indoor air pollutants due to the use of personal combustible products based on small-chamber studies.

    PubMed

    Szulejko, Jan E; Kim, Ki-Hyun

    2016-02-01

    As emission rates of airborne pollutants are commonly measured from combusting substances placed inside small chambers, those values need to be re-evaluated for the possible significance under practical conditions. Here, a simple numerical procedure is investigated to extrapolate the chamber-based emission rates of formaldehyde that can be released from various combustible sources including e-cigarettes, conventional cigarettes, or scented candles to their concentration levels in a small room with relatively poor ventilation. This simple procedure relies on a mass balance approach by considering the masses of pollutants emitted from source and lost through ventilation under the assumption that mixing occurs instantaneously in the room without chemical reactions or surface sorption. The results of our study provide valuable insights into re-evaluation procedure of chamber data to allow comparison between extrapolated and recommended values to judge the safe use of various combustible products in confined spaces. If two scented candles with a formaldehyde emission rate of 310 µg h(-1) each were lit for 4 h in a small 20 m(3) room with an air change rate of 0.5 h(-1), then the 4-h (candle lit) and 8-h (up to 8 h after candle lighting) TWA [FA] were determined to be 28.5 and 23.5 ppb, respectively. This is clearly above the 8-h NIOSH recommended exposure limit (REL) time weighted average of 16 ppb.

  15. Impact experiments. III - Catastrophic fragmentation of aggregate targets and relation to asteroids

    NASA Technical Reports Server (NTRS)

    Ryan, Eileen V.; Hartmann, William K.; Davis, Donald R.

    1991-01-01

    An experimental study is conducted of collisions employing artificial aggregates as targets, in order to ascertain the fragmentation characteristics of weakly bonded bodies that consist of stronger constituent particles, such as loosely aggregated planetesimals. It is established that weakly bonded aggregate bodies may exhibit unexpectedly high impact strengths due to constituent particles' energy dissipation. The cumulative size distributions of fragments that are larger than the constituent grains form power-law segments resembling those formed by the fragmentation of homogeneous targets.

  16. Low-energy SiC2H6+ and SiC3H9+ ion beam productions by the mass-selection of fragments produced from hexamethyldisilane for SiC film formations

    NASA Astrophysics Data System (ADS)

    Yoshimura, Satoru; Sugimoto, Satoshi; Murai, Kensuke; Kiuchi, Masato

    2016-12-01

    We have been attempting to produce low-energy ion beams from fragments produced through the decomposition of hexamethyldisilane (HMD) for silicon carbide (SiC) film formations. We mass-selected SiC2H6+ and SiC3H9+ ions from fragments produced from HMD, and finally produced low-energy SiC2H6+ and SiC3H9+ ion beams. The ion energy was approximately 100 eV. Then, the ion beams were irradiated to Si(100) substrates. The temperature of the Si substrate was 800°C during the ion irradiation. The X-ray diffraction and Raman spectroscopy of the substrates obtained following SiC2H6+ ion irradiation demonstrated the occurrence of 3C-SiC deposition. On the other hand, the film deposited by the irradiation of SiC3H9+ ions included diamond-like carbon in addition to 3C-SiC.

  17. Investigating the chemical mechanisms of the functionalization and fragmentation of hydrocarbons in the heterogeneous oxidation by OH using a stochastic kinetics model

    NASA Astrophysics Data System (ADS)

    Wiegel, A. A.; Wilson, K. R.; Hinsberg, B.; Houle, F. A.

    2014-12-01

    While the heterogeneous oxidation of atmospheric organic aerosols influences their effects on climate, air quality, and visibility, a more detailed understanding of the chemical mechanisms in heterogeneous oxidation is crucial for improving models of their chemical evolution in the atmosphere. Previous experimental work in our lab has shown two general reaction pathways for organic aerosol upon oxidation: functionalization, which adds additional oxygen functional groups to the carbon skeleton, and fragmentation, which leads to C-C bond scission and lower molecular weight oxidized products. Furthermore, these pathways were also found to be dependent on molecular structure, with more branched or oxidized hydrocarbons undergoing more fragmentation than less branched or oxidized hydrocarbons. However, while the mechanisms of hydrocarbon oxidation have been studied extensively in the gas phase, to what extent the gas phase mechanisms of hydrocarbon oxidation can be reliably applied to heterogeneous or bulk oxidation in aerosol remains unclear. To investigate the role of the condensed phase and molecular structure in the mechanism of heterogeneous organic aerosol oxidation, stochastic kinetics models are developed and compared to measurements of the products in the oxidation of hydrocarbons. Within the aerosol bulk, condensed phase rate coefficients and product branching ratios for peroxy reactions lead to different product distributions than those expected from gas phase peroxy reactions due to the presence of the liquid radical cage at the reaction site. As a result, tertiary alcohols and ketones were found to be the predominate products in the oxidation of squalane as observed in experiments. As the aerosol becomes further oxidized, β-scission of alkoxy radicals with neighboring functional groups is the primary fragmentation pathway leading to lower volatility products. In conjunction with this fragmentation mechanism, elimination of CO2 from acyloxy radicals was

  18. High-level carbapenem resistance in a Citrobacter freundii clinical isolate is due to a combination of KPC-2 production and decreased porin expression.

    PubMed

    Zhang, Rong; Yang, Lijiang; Cai, Jia Chang; Zhou, Hong Wei; Chen, Gong-Xiang

    2008-03-01

    An imipenem-resistant isolate of Citrobacter freundii ZJ163 (MIC 256 microg ml(-1)) isolated from a Chinese hospital was investigated. The C. freundii ZJ163 isolate exhibited high-level resistance to carbapenems, penicillins, cephalosporins, cefoxitin, aztreonam, quinolones and aminoglycosides. Isoelectric focusing (IEF) demonstrated three beta-lactamases with pIs of 5.4 (TEM-1), 6.7 (KPC-2) and 7.9 (CTX-M-14). Two different transconjugants (types A and B) were obtained by conjugation studies. The type A transconjugant exhibited reduced susceptibility or resistance to penicillins, cephalosporins and aztreonam, but was susceptible to carbapenems, quinolones and aminoglycosides. The antimicrobial susceptibility patterns of the type B transconjugant were similar to that of type A, except for its significantly reduced carbapenem susceptibility (imipenem MIC 2 microg ml(-1)). IEF, specific PCRs and DNA sequence analysis indicated that the type A transconjugant produced CTX-M-14 beta-lactamase with a pI of 7.9, that the type B transconjugant produced KPC-2 beta-lactamase with a pI of 6.7 and that the beta-lactamase with a pI of 5.4 was TEM-1. PCR analysis and sequencing confirmed the presence of the ampC gene in the chromosomal DNA from C. freundii ZJ163, although no activity of AmpC beta-lactamase was detected by IEF. Urea/SDS-PAGE analysis of outer-membrane proteins revealed that the levels of the 41 and 38 kDa porins were decreased in C. freundii ZJ163. It was concluded that production of KPC-2 combined with decreased expression of porins contributes to high-level resistance to carbapenems in C. freundii ZJ163.

  19. Importance of penicillinase production for activity of penicillin alone or in combination with sulbactam in experimental endocarditis due to methicillin-resistant Staphylococcus aureus.

    PubMed Central

    Fantin, B; Pierre, J; Castéla-Papin, N; Saint-Julien, L; Drugeon, H; Farinotti, R; Carbon, C

    1996-01-01

    The activity of penicillin, alone and in combination with sulbactam, against a heterogeneously methicillin-resistant, penicillinase-producing clinical isolate of Staphylococcus aureus and its penicillinase-negative derivative was investigated in vitro and in a rabbit experimental endocarditis model. Penicillin was significantly more effective than vancomycin against the penicillinase-negative derivative in vivo (P < 0.001), and it sterilized 25% of the vegetations. The combination of penicillin and sulbactam exhibited an in vivo synergistic effect on the penicillinase-producing strain (P < 0.01) but did not produce any advantage over treatment with vancomycin, even when a high dose of sulbactam was used (100 mg/kg of body weight every 6 h). This combination was significantly less effective against the penicillinase-producing strain than was penicillin alone against the penicillinase-negative derivative (P < 0.03). In addition, the most resistant subpopulation of the surviving bacteria, which grew on agar containing 16 micrograms of methicillin per ml, was detected in 5 of 6 animals treated with penicillin and a high dose of sulbactam against the penicillinase-producing strain compared with only 1 of 12 animals treated with penicillin alone against the penicillinase-negative derivative (P < 0.01). We conclude that penicillin is highly effective against penicillinase-negative methicillin-resistant S. aureus and that penicillinase production, rather than methicillin resistance, appears to be the limiting factor for the activity of the penicillin-sulbactam combination against penicillinase-producing, methicillin-resistant S. aureus. PMID:8723470

  20. Fragmentation of suddenly heated liquids

    SciTech Connect

    Blink, J.A.

    1985-03-01

    Fragmentation of free liquids in Inertial Confinement Fusion reactors could determine the upper bound on reactor pulse rate. The x-ray ablated materials must cool and recondense to allow driver beam propagation. The increased surface area caused by fragmentation will enhance the cooling and condensation rates. Relaxation from the suddenly heated state will move a liquid into the negative pressure region under the liquid-vapor P-V dome. The lithium equation of state was used to demonstrate that neutron-induced vaporization uses only a minor fraction of the added heat, much less than would be required to drive the expansion. A 77% expansion of the lithium is required before the rapid vaporization process of spinodal decomposition could begin, and nucleation and growth are too slow to contribute to the expansion.

  1. Fragmentation of the Chelyabinsk Fireball

    NASA Astrophysics Data System (ADS)

    Melosh, J.

    2013-12-01

    The most intense bolide since the 1908 Tunguska event occurred in the early morning hours of 15 February 2013 near the Russian town of Chelyabinsk. The impacting asteroid ranged between 17 and 20 m diameter with a mass of about 10,000 tons. Its estimated pre-atmospheric velocity was about 18.6 km/sec at a low angle of 20° from the horizontal. The resulting airburst occurred at an altitude of about 23 km and released an estimated total energy of about 440 kT (1.7 x 1015 J). The blast wave shattered windows on the ground over a wide area and collapsed the roof of a zinc factory. In spite of the size of the initital asteroid, only small fragments (a few kg, so far) have been recovered. The entry of an asteroid into Earth's atmosphere and its aerodynamic fragmentation and deceleration has been modeled by a number of authors over the past few decades. Full-featured numerical simulations are presently limited in their ability to simultaneously incorporate fragmentation, energy coupling between solid fragments and the atmosphere, and thermal radiation, but an approximate treatment of the fragmentation and dispersion of a large entering meteoroid called the 'pancake model' has achieved good fits to other observed events, including the Tunguska explosion, the 1947 Shikote-Alin fall and strewn fields from larger iron meteorite falls, such as the Henbury craters. Simulations using the pancake model can fit the overall observations of the Chelyabinsk event using an 18 m diameter asteroid of density 3000 kg/m3 following the observed trajectory and possessing an initial strength of about 7 MPa, which is relatively high for a stony meteoroid. This suggests that the asteroid was not a strengthless rubble pile, but in fact possessed considerable strength, compared to other stony meteorites of similar type. Aerodynamic breakup begins at an altitude of 31 km and the final airburst occurs at 22 km, releasing about 250 kT at this time. Subsequent to this airburst, large fragments

  2. The Importance of Maize Management on Dung Beetle Communities in Atlantic Forest Fragments

    PubMed Central

    Campos, Renata Calixto; Hernández, Malva Isabel Medina

    2015-01-01

    Dung beetle community structures changes due to the effects of destruction, fragmentation, isolation and decrease in tropical forest area, and therefore are considered ecological indicators. In order to assess the influence of type of maize cultivated and associated maize management on dung beetle communities in Atlantic Forest fragments surrounded by conventional and transgenic maize were evaluated 40 Atlantic Forest fragments of different sizes, 20 surrounded by GM maize and 20 surrounded by conventional maize, in February 2013 and 2014 in Southern Brazil. After applying a sampling protocol in each fragment (10 pitfall traps baited with human feces or carrion exposed for 48 h), a total of 3454 individuals from 44 species were captured: 1142 individuals from 38 species in GM maize surrounded fragments, and 2312 from 42 species in conventional maize surrounded fragments. Differences in dung beetle communities were found between GM and conventional maize communities. As expected for fragmented areas, the covariance analysis showed a greater species richness in larger fragments under both conditions; however species richness was greater in fragments surrounded by conventional maize. Dung beetle structure in the forest fragments was explained by environmental variables, fragment area, spatial distance and also type of maize (transgenic or conventional) associated with maize management techniques. In Southern Brazil’s scenario, the use of GM maize combined with associated agricultural management may be accelerating the loss of diversity in Atlantic Forest areas, and consequently, important ecosystem services provided by dung beetles may be lost. PMID:26694874

  3. The Importance of Maize Management on Dung Beetle Communities in Atlantic Forest Fragments.

    PubMed

    Campos, Renata Calixto; Hernández, Malva Isabel Medina

    2015-01-01

    Dung beetle community structures changes due to the effects of destruction, fragmentation, isolation and decrease in tropical forest area, and therefore are considered ecological indicators. In order to assess the influence of type of maize cultivated and associated maize management on dung beetle communities in Atlantic Forest fragments surrounded by conventional and transgenic maize were evaluated 40 Atlantic Forest fragments of different sizes, 20 surrounded by GM maize and 20 surrounded by conventional maize, in February 2013 and 2014 in Southern Brazil. After applying a sampling protocol in each fragment (10 pitfall traps baited with human feces or carrion exposed for 48 h), a total of 3454 individuals from 44 species were captured: 1142 individuals from 38 species in GM maize surrounded fragments, and 2312 from 42 species in conventional maize surrounded fragments. Differences in dung beetle communities were found between GM and conventional maize communities. As expected for fragmented areas, the covariance analysis showed a greater species richness in larger fragments under both conditions; however species richness was greater in fragments surrounded by conventional maize. Dung beetle structure in the forest fragments was explained by environmental variables, fragment area, spatial distance and also type of maize (transgenic or conventional) associated with maize management techniques. In Southern Brazil's scenario, the use of GM maize combined with associated agricultural management may be accelerating the loss of diversity in Atlantic Forest areas, and consequently, important ecosystem services provided by dung beetles may be lost.

  4. Modeling of Fragmentation of Asteroids

    NASA Technical Reports Server (NTRS)

    Agrawal, Parul; Prabhu, Dinesh K.; Carlozzi, Alexander; Hart, Kenneth; Bryson, Katie; Sears, Derek

    2015-01-01

    The objective of this study is to understand fragmentation and fracture of a given asteroid and mechanisms of break-up. The focus of the present work is to develop modeling techniques for stony asteroids in 10m-100m range to answer two questions: 1) What is the role of material makeup of an asteroid in the stress distribution? 2)How is stress distribution altered in the presence of pre-existing defects?

  5. Fragment Penetration Tests of Armor

    DTIC Science & Technology

    1983-03-15

    Identify by block numbhr) Provides techniques for evaluating armor resistance to attack by HE projectile fragments. Includes static detonations of shell...DISTRIBUTION D. REFERENCES * . . . ........ . ........... D-1 1. SCOPE. This TOP describes the available techniques for testing armor for resistance to attack by...Projectiles Against Armor Plates ("Yankee Stadium" Test-). 4.1.1 hCjective. The objective is to determine the resistance to penetration of various armor

  6. Fragmentation: Is the message clear?

    USGS Publications Warehouse

    Bissonette, J.A.; Storch, Ilse

    2002-01-01

    In this paper, we briefly discuss some of the fundamental problems arising from the inherent complexity of larger-scale ecological systems. We examine the tenuous assumption of a direct correspondence between ecological data and theory, we comment on a recent report that evaluated the efficacy of fragmentation experiments, and we briefly assess its implications for ecological research and conservation practice on the landscape scale. Copyright ?? 2002 by the author(s). Published here under licence by The Resilience Alliance.

  7. The fragmentation of Kosmos 2163

    NASA Technical Reports Server (NTRS)

    1992-01-01

    On 6 Dec. 1991 Kosmos 2163, a maneuverable Soviet spacecraft which had been in orbit for 58 days, experienced a major breakup at an altitude of approximately 210 km. Although numerous pieces of debris were created, the fragments decayed rapidly leaving no long-term impact on the near-Earth environment. The assessed cause of the event is the deliberate detonation of an explosive device. Details of this event are presented.

  8. Acromegaly and Cushing's syndrome due to ectopic production of GHRH and ACTH by a thymic carcinoid tumour: in vitro responses to GHRH and GHRP-6.

    PubMed

    Jansson, J O; Svensson, J; Bengtsson, B A; Frohman, L A; Ahlman, H; Wängberg, B; Nilsson, O; Nilsson, M

    1998-02-01

    A 50-year-old male presented with diabetes mellitus and Cushing's syndrome associated with a large mediastinal mass. The levels of serum cortisol were high (1500-1800 nmol/l) without diurnal variation. Plasma ACTH levels (200-250 ng/l) and urinary excretion of cortisol were also increased. The levels of these hormones did not change in response to stimulation with corticotrophin releasing hormone (CRH) or suppression with high doses of dexamethasone. The patient had an elevated baseline GH level (7.3 mU/l), and the levels of immunoreactive GH-releasing hormone (GHRH) in eight plasma samples were markedly increased (600-1500 ng/l). Circulating levels of IGF-1, chromogranin A and neuropeptide Y (NPY) were also increased. Computer-assisted tomography and octreotide scintigraphy revealed a large mediastinal tumour and metastases in the left supraclavicular fossa. During treatment with octreotide, the baseline GH level was decreased (to 4.4 mU/l), while the GH pulse height was unchanged. Surgical removal of most of the tumour tissue resulted in a further decrease in the baseline serum GH level to a value (1.6 mU/l) about 20% of that before treatment, while the pulse height and mean GH were affected to a lesser extent. Postoperatively, circulating levels of cortisol and IGF-1 decreased, and the patient exhibited clinical improvement. Histological examination showed a neuroendocrine tumour with characteristics consistent with a foregut carcinoid of thymic origin. Immunoreactive GHRH, ACTH and NPY, but not immunoreactive GH, were detected in 80-90% of the tumour cells and the three peptides appeared to be co-localized. In primary culture, cells from this tumour displayed calcium influx in response to GHRH or GH releasing peptide-6 (GHRP-6), while there were not such responses by cells from another carcinoid not producing GHRH, ACTH or NPY. These results demonstrate a rare case of ectopic production of GHRH, ACTH and NPY, and indicate that the tumour cells were responsive

  9. Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.

    PubMed

    Immonen, Taina T; Conway, Jessica M; Romero-Severson, Ethan O; Perelson, Alan S; Leitner, Thomas

    2015-12-01

    HIV-1 is subject to immune pressure exerted by the host, giving variants that escape the immune response an advantage. Virus released from activated latent cells competes against variants that have continually evolved and adapted to host immune pressure. Nevertheless, there is increasing evidence that virus displaying a signal of latency survives in patient plasma despite having reduced fitness due to long-term immune memory. We investigated the survival of virus with latent envelope genomic fragments by simulating within-host HIV-1 sequence evolution and the cycling of viral lineages in and out of the latent reservoir. Our model incorporates a detailed mutation process including nucleotide substitution, recombination, latent reservoir dynamics, diversifying selection pressure driven by the immune response, and purifying selection pressure asserted by deleterious mutations. We evaluated the ability of our model to capture sequence evolution in vivo by comparing our simulated sequences to HIV-1 envelope sequence data from 16 HIV-infected untreated patients. Empirical sequence divergence and diversity measures were qualitatively and quantitatively similar to those of our simulated HIV-1 populations, suggesting that our model invokes realistic trends of HIV-1 genetic evolution. Moreover, reconstructed phylogenies of simulated and patient HIV-1 populations showed similar topological structures. Our simulation results suggest that recombination is a key mechanism facilitating the persistence of virus with latent envelope genomic fragments in the productively infected cell population. Recombination increased the survival probability of latent virus forms approximately 13-fold. Prevalence of virus with latent fragments in productively infected cells was observed in only 2% of simulations when we ignored recombination, while the proportion increased to 27% of simulations when we allowed recombination. We also found that the selection pressures exerted by different fitness

  10. Recombination enhances HIV-1 envelope diversity by facilitating the survival of latent genomic fragments in the plasma virus population

    SciTech Connect

    Immonen, Taina T.; Conway, Jessica M.; Romero-Severson, Ethan O.; Perelson, Alan S.; Leitner, Thomas; Kouyos, Roger Dimitri

    2015-12-22

    HIV-1 is subject to immune pressure exerted by the host, giving variants that escape the immune response an advantage. Virus released from activated latent cells competes against variants that have continually evolved and adapted to host immune pressure. Nevertheless, there is increasing evidence that virus displaying a signal of latency survives in patient plasma despite having reduced fitness due to long-term immune memory. We investigated the survival of virus with latent envelope genomic fragments by simulating within-host HIV-1 sequence evolution and the cycling of viral lineages in and out of the latent reservoir. Our model incorporates a detailed mutation process including nucleotide substitution, recombination, latent reservoir dynamics, diversifying selection pressure driven by the immune response, and purifying selection pressure asserted by deleterious mutations. We evaluated the ability of our model to capture sequence evolution in vivo by comparing our simulated sequences to HIV-1 envelope sequence data from 16 HIV-infected untreated patients. Empirical sequence divergence and diversity measures were qualitatively and quantitatively similar to those of our simulated HIV-1 populations, suggesting that our model invokes realistic trends of HIV-1 genetic evolution. Moreover, reconstructed phylogenies of simulated and patient HIV-1 populations showed similar topological structures. Our simulation results suggest that recombination is a key mechanism facilitating the persistence of virus with latent envelope genomic fragments in the productively infected cell population. Recombination increased the survival probability of latent virus forms approximately 13-fold. Prevalence of virus with latent fragments in productively infected cells was observed in only 2% of simulations when we ignored recombination, while the proportion increased to 27% of simulations when we allowed recombination. We also found that the selection pressures exerted by different fitness

  11. Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population

    PubMed Central

    Immonen, Taina T.; Conway, Jessica M.; Romero-Severson, Ethan O.; Perelson, Alan S.; Leitner, Thomas

    2015-01-01

    HIV-1 is subject to immune pressure exerted by the host, giving variants that escape the immune response an advantage. Virus released from activated latent cells competes against variants that have continually evolved and adapted to host immune pressure. Nevertheless, there is increasing evidence that virus displaying a signal of latency survives in patient plasma despite having reduced fitness due to long-term immune memory. We investigated the survival of virus with latent envelope genomic fragments by simulating within-host HIV-1 sequence evolution and the cycling of viral lineages in and out of the latent reservoir. Our model incorporates a detailed mutation process including nucleotide substitution, recombination, latent reservoir dynamics, diversifying selection pressure driven by the immune response, and purifying selection pressure asserted by deleterious mutations. We evaluated the ability of our model to capture sequence evolution in vivo by comparing our simulated sequences to HIV-1 envelope sequence data from 16 HIV-infected untreated patients. Empirical sequence divergence and diversity measures were qualitatively and quantitatively similar to those of our simulated HIV-1 populations, suggesting that our model invokes realistic trends of HIV-1 genetic evolution. Moreover, reconstructed phylogenies of simulated and patient HIV-1 populations showed similar topological structures. Our simulation results suggest that recombination is a key mechanism facilitating the persistence of virus with latent envelope genomic fragments in the productively infected cell population. Recombination increased the survival probability of latent virus forms approximately 13-fold. Prevalence of virus with latent fragments in productively infected cells was observed in only 2% of simulations when we ignored recombination, while the proportion increased to 27% of simulations when we allowed recombination. We also found that the selection pressures exerted by different fitness

  12. Effects of clonal fragmentation on intraspecific competition of a stoloniferous floating plant.

    PubMed

    Wang, P; Xu, Y-S; Dong, B-C; Xue, W; Yu, F-H

    2014-11-01

    Disturbance is common and can fragment clones of plants. Clonal fragmentation may affect the density and growth of ramets so that it could alter intraspecific competition. To test this hypothesis, we grew one (low density), five (medium density) or nine (high density) parent ramets of the floating invasive plant Pistia stratiotes in buckets, and newly produced offspring ramets were either severed (with fragmentation) or remained connected to parent ramets (no fragmentation). Increasing density reduced biomass of the whole clone (i.e. parent ramet plus its offspring ramets), showing intense intraspecific competition. Fragmentation decreased biomass of offspring ramets, but increased biomass of parent ramets and the whole clone, suggesting significant resource translocation from parent to offspring ramets when clones were not fragmented. There was no interaction effect of density x fragmentation on biomass of the whole clone, and fragmentation did not affect competition intensity index. We conclude that clonal fragmentation does not alter intraspecific competition between clones of P. stratiotes, but increases biomass production of the whole clone. Thus, fragmentation may contribute to its interspecific competitive ability and invasiveness, and intentional fragmentation should not be recommended as a measure to stop the rapid growth of this invasive species.

  13. Enantioselective total synthesis of callipeltoside A: two approaches to the macrolactone fragment

    PubMed Central

    Evans, David A.; Burch, Jason D.; Hu, Essa; Jaeschke, Georg

    2012-01-01

    The enantioselective total synthesis of callipeltoside A is described. Two syntheses of the macrolactone subunit are included: the first relies upon an Ireland–Claisen rearrangement to generate the trisubstituted olefin geometry and the second utilizes an enantioselective vinylogous aldol reaction for this purpose. Enantioselective syntheses of the sugar and chlorocyclopropane side chain fragments are also disclosed. The relative and absolute stereochemistry of this natural product was determined by fragment coupling with the two enantiomers of the side chain fragment. PMID:22859865

  14. Improvements to a model of projectile fragmentation

    NASA Astrophysics Data System (ADS)

    Mallik, S.; Chaudhuri, G.; Das Gupta, S.

    2011-11-01

    In a recent paper [Phys. Rev. CPRVCAN0556-281310.1103/PhysRevC.83.044612 83, 044612 (2011)] we proposed a model for calculating cross sections of various reaction products which arise from disintegration of projectile-like fragments resulting from heavy-ion collisions at intermediate or higher energy. The model has three parts: (1) abrasion, (2) disintegration of the hot abraded projectile-like fragment (PLF) into nucleons and primary composites using a model of equilibrium statistical mechanics, and (3) possible evaporation of hot primary composites. It was assumed that the PLF resulting from abrasion has one temperature T. Data suggested that, while just one value of T seemed adequate for most cross-section calculations, a single value failed when dealing with very peripheral collisions. We have now introduced a variable T=T(b) where b is the impact parameter of the collision. We argue that there are data which not only show that T must be a function of b but, in addition, also point to an approximate value of T for a given b. We propose a very simple formula: T(b)=D0+D1[As(b)/A0] where As(b) is the mass of the abraded PLF and A0 is the mass of the projectile; D0 and D1 are constants. Using this model we compute cross sections for several collisions and compare with data.

  15. Isolator fragmentation and explosive initiation tests

    SciTech Connect

    Dickson, Peter; Rae, Philip John; Foley, Timothy J.; Novak, Alan M.; Armstrong, Christopher Lee; Baca, Eva V.; Gunderson, Jake Alfred

    2015-09-30

    Three tests were conducted to evaluate the effects of firing an isolator in proximity to a barrier or explosive charge. The tests with explosive were conducted without barrier, on the basis that since any barrier will reduce the shock transmitted to the explosive, bare explosive represents the worst-case from an inadvertent initiation perspective. No reaction was observed. The shock caused by the impact of a representative plastic material on both bare and cased PBX9501 is calculated in the worst-case, 1-D limit, and the known shock response of the HE is used to estimate minimum run-to-detonation lengths. The estimates demonstrate that even 1-D impacts would not be of concern and that, accordingly, the divergent shocks due to isolator fragment impact are of no concern as initiating stimuli.

  16. Isolator fragmentation and explosive initiation tests

    SciTech Connect

    Dickson, Peter; Rae, Philip John; Foley, Timothy J.; Novak, Alan M.; Armstrong, Christopher Lee; Baca, Eva V.; Gunderson, Jake Alfred

    2016-09-19

    Three tests were conducted to evaluate the effects of firing an isolator in proximity to a barrier or explosive charge. The tests with explosive were conducted without a barrier, on the basis that since any barrier will reduce the shock transmitted to the explosive, bare explosive represents the worst-case from an inadvertent initiation perspective. No reaction was observed. The shock caused by the impact of a representative plastic material on both bare and cased PBX 9501 is calculated in the worst-case, 1-D limit, and the known shock response of the HE is used to estimate minimum run-to-detonation lengths. The estimates demonstrate that even 1-D impacts would not be of concern and that, accordingly, the divergent shocks due to isolator fragment impact are of no concern as initiating stimuli.

  17. Fragmentation in Science and in Society

    ERIC Educational Resources Information Center

    Bohm, David

    1971-01-01

    Fragmentation" is a general social condition. The author presents a case for wholeness and its dynamic, cyclic character. Science and society need not be fragmented. They should be considered part of a holocyclation." (LS)

  18. The multifaceted nature of amyloid precursor protein and its proteolytic fragments: friends and foes

    PubMed Central

    Nhan, Hoang S.; Chiang, Karen

    2014-01-01

    The amyloid precursor protein (APP) has occupied a central position in Alzheimer’s disease (AD) pathophysiology, in large part due to the seminal role of amyloid-β peptide (Aβ), a proteolytic fragment derived from APP. Although the contribution of Aβ to AD pathogenesis is accepted by many in the research community, recent studies have unveiled a more complicated picture of APP’s involvement in neurodegeneration in that other APP-derived fragments have been shown to exert pathological influences on neuronal function. However, not all APP-derived peptides are neurotoxic, and some even harbor neuroprotective effects. In this review, we will explore this complex picture by first discussing the pleiotropic effects of the major APP-derived peptides cleaved by multiple proteases, including soluble APP peptides (sAPPα, sAPPβ), various C- and N-terminal fragments, p3, and APP intracellular domain fragments. In addition, we will highlight two interesting sequences within APP that likely contribute to this duality in APP function. First, it has been found that caspase-mediated cleavage of APP in the cytosolic region may release a cytotoxic peptide, C31, which plays a role in synapse loss and neuronal death. Second, recent studies have implicated the –YENPTY– motif in the cytoplasmic region as a domain that modulates several APP activities through phosphorylation and dephosphorylation of the first tyrosine residue. Thus, this review summarizes the current understanding of various APP proteolytic products and the interplay among them to gain deeper insights into the possible mechanisms underlying neurodegeneration and AD pathophysiology. PMID:25287911

  19. Evaluating Fragment Construction Policies for SDT Systems

    DTIC Science & Technology

    2006-01-01

    allocates a fragment and begins translation. Once a termination condition is met, Strata emits any trampolines that are necessary. Trampolines are pieces... trampolines (unless its target previously exists in the fragment cache). Once a CTI’s target instruction becomes available in the fragment cache, the CTI is...linked directly to the destination, avoiding future uses of the trampoline . This mechanism is called Fragment Linking and avoids significant overhead

  20. Flares in gamma-ray bursts: disc fragmentation and evolution

    NASA Astrophysics Data System (ADS)

    Dall'Osso, Simone; Perna, Rosalba; Tanaka, Takamitsu L.; Margutti, Raffaella

    2017-02-01

    Flaring activity following gamma-ray bursts (GRBs), observed in both long and short GRBs, signals a long-term activity of the central engine. However, its production mechanism has remained elusive. Here, we develop a quantitative model of the idea proposed by Perna et al. of a disc whose outer regions fragment due to the onset of gravitational instability. The self-gravitating clumps migrate through the disc and begin to evolve viscously when tidal and shearing torques break them apart. Our model consists of two ingredients: theoretical bolometric flare light curves whose shape (width, skewness) is largely insensitive to the model parameters, and a spectral correction to match the bandpass of the available observations, that is calibrated using the observed spectra of the flares. This simple model reproduces, with excellent agreement, the empirical statistical properties of the flares as measured by their width-to-arrival time ratio and skewness (ratio between decay and rise time). We present model fits to the observed light curves of two well-monitored flares, GRB 060418 and GRB 060904B. To the best of our knowledge, this is the first quantitative model able to reproduce the flare light curves and explain their global statistical properties.

  1. Biodiversity conservation across taxa and landscapes requires many small as well as single large habitat fragments.

    PubMed

    Rösch, Verena; Tscharntke, Teja; Scherber, Christoph; Batáry, Péter

    2015-09-01

    Agricultural intensification has been shown to reduce biodiversity through processes such as habitat degradation and fragmentation. We tested whether several small or single large habitat fragments (re-visiting the 'single large or several small' debate) support more species across a wide range of taxonomic groups (plants, leafhoppers, true bugs, snails). Our study comprised 14 small (<1 ha) and 14 large (1.5-8 ha) fragments of calcareous grassland in Central Germany along orthogonal gradients of landscape complexity and habitat connectivity. Each taxon was sampled on six plots per fragment. Across taxa, species richness did not differ between large and small fragments, whereas species-area accumulation curves showed that both overall and specialist species richness was much higher on several small fragments of calcareous grassland than on few large fragments. On average, 85% of the overall species richness was recorded on all small fragments taken together (4.6 ha), whereas the two largest ones (15.1 ha) only accounted for 37% of the species. This could be due to the greater geographic extent covered by many small fragments. However, community composition differed strongly between large and small fragments, and some of the rarest specialist species appeared to be confined to large fragments. The surrounding landscape did not show any consistent effects on species richness and community composition. Our results show that both single large and many small fragments are needed to promote landscape-wide biodiversity across taxa. We therefore question the focus on large fragments only and call for a new diversified habitat fragmentation strategy for biodiversity conservation.

  2. Theoretical model of HZE particle fragmentation by hydrogen targets

    NASA Technical Reports Server (NTRS)

    Townsend, L.W.; Cucinotta, F. A; Bagga, R.; Tripathi, R. K.

    1996-01-01

    The fragmenting of high energy, heavy ions (HZE particles) by hydrogen targets is an important, physical process in several areas of space radiation research. In this work quantum mechanical optical model methods for estimating cross sections for HZE particle fragmentation by hydrogen targets are presented. The cross sections are calculated using a modified abrasion-ablation collision formalism adapted from a nucleus-nucleus collision model. Elemental and isotopic production cross sections are estimated and compared with reported measurements for the breakup of neon, sulphur, and iron, nuclei at incident energies between 400 and 910 Mev/nucleon. Good agreement between theory and experiment is obtained.

  3. Gravitational waves from Affleck-Dine condensate fragmentation

    SciTech Connect

    Zhou, Shuang-Yong

    2015-06-01

    We compute the stochastic gravitational wave production from Affleck-Dine condensate fragmentation in the early universe, focusing on an effective potential with a logarithmic mass correction that typically arises in gravity mediated supersymmetry breaking scenarios. We find that a significant gravitational wave background can be generated when Q-balls are being formed out of the condensate fragmentation. This gravitational wave background has a distinct multi-peak power spectrum where the trough is closely linked to the supersymmetry breaking scale and whose frequencies are peaked around kHz for TeV supersymmetry breaking.

  4. Beetle diversity in fragmented thornscrub and isolated trees.

    PubMed

    Cuéllar-Rodríguez, G; Jurado, E; Flores, J

    2017-03-01

    Due to land use change mainly for induced agriculture, Tamaulipan thornscrubin northeast Mexico has been cleared and transformed into small patches of vegetation as small as isolated trees surrounded by agricultural fields. In this study, we explored how tree isolation or growing inside a fragment of remnant vegetation influence diversity of coleopterans in two plant species (Prosopis laevigata (Humb. &Bonpl.exWilld.) M.C. Johnst. (mesquite) and Ebenopsis ebano (Berl.) Barneby (Texas ebony). We found 72 coleopteran morphospecies; fifteen occurred mainly in remnant fragments and ten mainly in isolated trees. There were more insects under isolated mesquites than under those immersed in remnant fragments, while in Texas ebony the highest beetle density for isolated trees coincided with periods of bean and maize in surrounding agriculture.

  5. DNA fragment editing of genomes by CRISPR/Cas9.

    PubMed

    Jinhuan, Li; Jia, Shou; Qiang, Wu

    2015-10-01

    The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated nuclease 9 (Cas9) system from bacteria and archaea emerged recently as a new powerful technology of genome editing in virtually any organism. Due to its simplicity and cost effectiveness, a revolutionary change of genetics has occurred. Here, we summarize the recent development of DNA fragment editing methods by CRISPR/Cas9 and describe targeted DNA fragment deletions, inversions, duplications, insertions, and translocations. The efficient method of DNA fragment editing provides a powerful tool for studying gene function, regulatory elements, tissue development, and disease progression. Finally, we discuss the prospects of CRISPR/Cas9 system and the potential applications of other types of CRISPR system.

  6. Fragmentation of biomolecules using slow highly charged ions

    NASA Astrophysics Data System (ADS)

    Ruehlicke, Christiane; Schneider, Dieter; DuBois, Robert; Balhorn, Rodney

    1997-02-01

    We present first results of biomolecular fragmentation studies with slow highly charged ions (HCI). A thin layer of the tripeptide RVA was deposited on gold targets and irradiated with slow (few 100 keV) ions, e.g. Xe50+ and Xe15+, extracted from the LLNL EBIT (electron beam ion trap). The secondary ions released upon ion impact were mass analyzed via Time-Of-Flight Secondary-Ion-Mass-Spectrometry (TOF-SIMS). The results show a strong dependence of the positive and negative ion yields on the charge state of the incident ion. We also found that incident ions with high charge states cause the ejection of fragments with a wide mass range as well as the intact molecule (345 amu). The underlying mechanisms are not yet understood but electron depletion of the target due to the high incident charge is likely to cause a variety of fragmentation processes.

  7. Robust Object Tracking Using Valid Fragments Selection

    PubMed Central

    Li, Bo; Tian, Peng; Luo, Gang

    2016-01-01

    Local features are widely used in visual tracking to improve robustness in cases of partial occlusion, deformation and rotation. This paper proposes a local fragment-based object tracking algorithm. Unlike many existing fragment-based algorithms that allocate the weights to each fragment, this method firstly defines discrimination and uniqueness for local fragment, and builds an automatic pre-selection of useful fragments for tracking. Then, a Harris-SIFT filter is used to choose the current valid fragments, excluding occluded or highly deformed fragments. Based on those valid fragments, fragment-based color histogram provides a structured and effective description for the object. Finally, the object is tracked using a valid fragment template combining the displacement constraint and similarity of each valid fragment. The object template is updated by fusing feature similarity and valid fragments, which is scale-adaptive and robust to partial occlusion. The experimental results show that the proposed algorithm is accurate and robust in challenging scenarios. PMID:27430036

  8. Evolution of Particle Size Distributions in Fragmentation Over Time

    NASA Astrophysics Data System (ADS)

    Charalambous, C. A.; Pike, W. T.

    2013-12-01

    We present a new model of fragmentation based on a probabilistic calculation of the repeated fracture of a particle population. The resulting continuous solution, which is in closed form, gives the evolution of fragmentation products from an initial block, through a scale-invariant power-law relationship to a final comminuted powder. Models for the fragmentation of particles have been developed separately in mainly two different disciplines: the continuous integro-differential equations of batch mineral grinding (Reid, 1965) and the fractal analysis of geophysics (Turcotte, 1986) based on a discrete model with a single probability of fracture. The first gives a time-dependent development of the particle-size distribution, but has resisted a closed-form solution, while the latter leads to the scale-invariant power laws, but with no time dependence. Bird (2009) recently introduced a bridge between these two approaches with a step-wise iterative calculation of the fragmentation products. The development of the particle-size distribution occurs with discrete steps: during each fragmentation event, the particles will repeatedly fracture probabilistically, cascading down the length scales to a final size distribution reached after all particles have failed to further fragment. We have identified this process as the equivalent to a sequence of trials for each particle with a fixed probability of fragmentation. Although the resulting distribution is discrete, it can be reformulated as a continuous distribution in maturity over time and particle size. In our model, Turcotte's power-law distribution emerges at a unique maturation index that defines a regime boundary. Up to this index, the fragmentation is in an erosional regime with the initial particle size setting the scaling. Fragmentation beyond this index is in a regime of comminution with rebreakage of the particles down to the size limit of fracture. The maturation index can increment continuously, for example under

  9. In situ magnetic separation of antibody fragments from Escherichia coli in complex media

    PubMed Central

    2013-01-01

    Background In situ magnetic separation (ISMS) has emerged as a powerful tool to overcome process constraints such as product degradation or inhibition of target production. In the present work, an integrated ISMS process was established for the production of his-tagged single chain fragment variable (scFv) D1.3 antibodies (“D1.3”) produced by E. coli in complex media. This study investigates the impact of ISMS on the overall product yield as well as its biocompatibility with the bioprocess when metal-chelate and triazine-functionalized magnetic beads were used. Results Both particle systems are well suited for separation of D1.3 during cultivation. While the triazine beads did not negatively impact the bioprocess, the application of metal-chelate particles caused leakage of divalent copper ions in the medium. After the ISMS step, elevated copper concentrations above 120 mg/L in the medium negatively influenced D1.3 production. Due to the stable nature of the model protein scFv D1.3 in the biosuspension, the application of ISMS could not increase the overall D1.3 yield as was shown by simulation and experiments. Conclusions We could demonstrate that triazine-functionalized beads are a suitable low-cost alternative to selectively adsorb D1.3 fragments, and measured maximum loads of 0.08 g D1.3 per g of beads. Although copper-loaded metal-chelate beads did adsorb his-tagged D1.3 well during cultivation, this particle system must be optimized by minimizing metal leakage from the beads in order to avoid negative inhibitory effects on growth of the microorganisms and target production. Hereby, other types of metal chelate complexes should be tested to demonstrate biocompatibility. Such optimized particle systems can be regarded as ISMS platform technology, especially for the production of antibodies and their fragments with low stability in the medium. The proposed model can be applied to design future ISMS experiments in order to maximize the overall product yield

  10. Electromagnetic Dissociation Cross Sections for High LET Fragments

    NASA Technical Reports Server (NTRS)

    Norbury, John

    2016-01-01

    Nuclear interaction cross sections are used in space radiation transport codes to calculate the probability of fragment emission in high energy nucleus-nucleus collisions. Strong interactions usually dominate in these collisions, but electromagnetic (EM) interactions can also sometimes be important. Strong interactions typically occur when the projectile nucleus hits a target nucleus, with a small impact parameter. For impact parameters larger than the sum of the nuclear radii, EM reactions dominate and the process is called electromagnetic dissociation (EMD) if one of the nuclei undergo fragmentation. Previous models of EMD have been used to calculate single proton (p) production, single neutron (n) production or light ion production, where a light ion is defined as an isotope of hydrogen (H) or helium (He), such as a deuteron (2H), a triton (3H), a helion (3He) or an alpha particle (4He). A new model is described which can also account for multiple nucleon production, such as 2p, 2n, 1p1n, 2p1n, 2p2n, etc. in addition to light ion production. Such processes are important to include for the following reasons. Consider, for example, the EMD reaction 56Fe + Al --> 52Cr + X + Al, for a 56Fe projectile impacting Al, which produces the high linear energy transfer (LET) fragment 52Cr. In this reaction, the most probable particles representing X are either 2p2n or 4He. Therefore, production of the high LET fragment 52Cr, must include the multiple nucleon production of 2p2n in addition to the light ion production of 4He. Previous models, such as the NUCFRG3 model, could only account for the 4He production process in this reaction and could not account for 2p2n. The new EMD model presented in this work accounts for both the light ion and multiple nucleon processes, and is therefore able to correctly account for the production of high LET products such as 52Cr. The model will be described and calculations will be presented that show the importance of light ion and multiple

  11. Signature of the Fragmentation of a Color Flux Tube

    SciTech Connect

    Wong, Cheuk-Yin

    2015-10-07

    The production of quark-antiquark pairs along a color flux tube precedes the fragmentation of the tube. Because of the local conservation of momentum and charge, the production of a $q$-$\\bar q$ pair will lead to correlations of adjacently produced mesons (mostly pions). Adjacently produced pions however can be signalled by the their rapidity difference $\\Delta y$ falling within the window of $|\\Delta y | < 1/(dN_\\pi/dy)$, on account of the space-time-rapidity ordering of produced pions in a flux tube fragmentation. Therefore, the local conservation of momentum will lead to a suppression of azimuthal two-pion correlation $dN/(d\\Delta \\phi\\, d\\Delta y)$ on the near side at $(\\Delta \\phi, \\Delta y) \\sim 0$, but an enhanced azimuthal correlation on the back-to-back, away side at $(\\Delta \\phi$$\\sim$$ \\pi,\\Delta y$$\\sim$0). Similarly, in a flux tube fragmentation, the local conservation of charge will forbid the production of like charge pions within $|\\Delta y | < 1/(dN_\\pi/dy)$, but there is no such prohibition for $|\\Delta y| >1/(dN_\\pi/dy)$. These properties may be used as the signature for the fragmentation of a color flux tube.

  12. Signature of the Fragmentation of a Color Flux Tube

    DOE PAGES

    Wong, Cheuk-Yin

    2015-10-07

    The production of quark-antiquark pairs along a color flux tube precedes the fragmentation of the tube. Because of the local conservation of momentum and charge, the production of amore » $q$-$$\\bar q$$ pair will lead to correlations of adjacently produced mesons (mostly pions). Adjacently produced pions however can be signalled by the their rapidity difference $$\\Delta y$$ falling within the window of $$|\\Delta y | < 1/(dN_\\pi/dy)$$, on account of the space-time-rapidity ordering of produced pions in a flux tube fragmentation. Therefore, the local conservation of momentum will lead to a suppression of azimuthal two-pion correlation $$dN/(d\\Delta \\phi\\, d\\Delta y)$$ on the near side at $$(\\Delta \\phi, \\Delta y) \\sim 0$$, but an enhanced azimuthal correlation on the back-to-back, away side at $$(\\Delta \\phi$$$\\sim$$$ \\pi,\\Delta y$$$\\sim$$0). Similarly, in a flux tube fragmentation, the local conservation of charge will forbid the production of like charge pions within $$|\\Delta y | < 1/(dN_\\pi/dy)$$, but there is no such prohibition for $$|\\Delta y| >1/(dN_\\pi/dy)$$. These properties may be used as the signature for the fragmentation of a color flux tube.« less

  13. Understanding the Fragmentation Pattern of Marine Plastic Debris.

    PubMed

    Ter Halle, Alexandra; Ladirat, Lucie; Gendre, Xavier; Goudouneche, Dominique; Pusineri, Claire; Routaboul, Corinne; Tenailleau, Christophe; Duployer, Benjamin; Perez, Emile

    2016-06-07

    The global estimation of microplastic afloat in the ocean is only approximately 1% of annual global plastic inputs. This reflects fundamental knowledge gaps in the transformation, fragmentation, and fates of microplastics in the ocean. In order to better understand microplastic fragmentation we proceeded to a thorough physicochemical characterization of samples collected from the North Artlantic subtropical gyre during the sea campaign Expedition seventh Continent in May 2014. The results were confronted with a mathematical approach. The introduction of mass distribution in opposition to the size distribution commonly proposed in this area clarify the fragmentation pattern. The mathematical analysis of the mass distribution points out a lack of debris with mass lighter than 1 mg. Characterization by means of microscopy, microtomography, and infrared microscopy gives a better understanding of the behavior of microplastic at sea. Flat pieces of debris (2 to 5 mm in length) typically have one face that is more photodegraded (due to exposure to the sun) and the other with more biofilm, suggesting that they float in a preferred orientation. Smaller debris, with a cubic shape (below 2 mm), seems to roll at sea. All faces are evenly photodegraded and they are less colonized. The breakpoint in the mathematical model and the experimental observation around 2 mm leads to the conclusion that there is a discontinuity in the rate of fragmentation: we hypothesized that the smaller microplastics, the cubic ones mostly, are fragmented much faster than the parallelepipeds.

  14. Fission fragment excited laser system

    DOEpatents

    McArthur, David A.; Tollefsrud, Philip B.

    1976-01-01

    A laser system and method for exciting lasing action in a molecular gas lasing medium which includes cooling the lasing medium to a temperature below about 150 K and injecting fission fragments through the lasing medium so as to preferentially excite low lying vibrational levels of the medium and to cause population inversions therein. The cooled gas lasing medium should have a mass areal density of about 5 .times. 10.sup.-.sup.3 grams/square centimeter, relaxation times of greater than 50 microseconds, and a broad range of excitable vibrational levels which are excitable by molecular collisions.

  15. Burried broken extraction instrument fragment

    PubMed Central

    Balaji, S. M.

    2013-01-01

    Despite adequate effort to perform tooth removal carefully, some accidents may happen when defective instruments are unknowingly used. This article reports of a non-symptomatic case of a retained fractured dental elevator tip during an uneventful extraction a decade earlier. Patient was not aware till routine radiographic examination revealed its presence. Use of three dimensional imaging techniques in this case is highlighted. Rarely, instruments breakage may occur during surgical procedures. It is duty of the dentists to check the surgical instrument for signs of breakage and be prepared to solve a possible emergency. Retained fragments should be carefully studied prior to attempt of removal. PMID:23662269

  16. Fragmentation in massive star formation.

    PubMed

    Beuther, Henrik; Schilke, Peter

    2004-02-20

    Studies of evolved massive stars indicate that they form in a clustered mode. During the earliest evolutionary stages, these regions are embedded within their natal cores. Here we present high-spatial-resolution interferometric dust continuum observations disentangling the cluster-like structure of a young massive star-forming region. The derived protocluster mass distribution is consistent with the stellar initial mass function. Thus, fragmentation of the initial massive cores may determine the initial mass function and the masses of the final stars. This implies that stars of all masses can form via accretion processes, and coalescence of intermediate-mass protostars appears not to be necessary.

  17. Site-specific immobilization of recombinant antibody fragments through material-binding peptides for the sensitive detection of antigens in enzyme immunoassays.

    PubMed

    Kumada, Yoichi

    2014-11-01

    The immobilization of an antibody is one of the key technologies that are used to enhance the sensitivity and efficiency of the detection of target molecules in immunodiagnosis and immunoseparation. Recombinant antibody fragments such as VHH, scFv and Fabs produced by microorganisms are the next generation of ligand antibodies as an alternative to conventional whole Abs due to a smaller size and the possibility of site-directed immobilization with uniform orientation and higher antigen-binding activity in the adsorptive state. For the achievement of site-directed immobilization, affinity peptides for a certain ligand molecule or solid support must be introduced to the recombinant antibody fragments. In this mini-review, immobilization technologies for the whole antibodies (whole Abs) and recombinant antibody fragments onto the surfaces of plastics are introduced. In particular, the focus here is on immobilization technologies of recombinant antibody fragments utilizing affinity peptide tags, which possesses strong binding affinity towards the ligand molecules. Furthermore, I introduced the material-binding peptides that are capable of direct recognition of the target materials. Preparation and immobilization strategies for recombinant antibody fragments linked to material-binding peptides (polystyrene-binding peptides (PS-tags) and poly (methyl methacrylate)-binding peptide (PMMA-tag)) are the focus here, and are based on the enhancement of sensitivity and a reduction in the production costs of ligand antibodies. This article is part of a Special Issue entitled: Recent advances in molecular engineering of antibody.

  18. Direct cascade of droplet fragmentation in sparkling fireworks

    NASA Astrophysics Data System (ADS)

    Inoue, Chihiro; Villermaux, Emmanuel

    2016-11-01

    Sparkling fireworks are popular in Japan for 400 years. They are made by a twisted paper simply wrapping 0.1g of black powder at the lower end. Ignited there, the powder melts in a fireball of molten salts, ejecting droplets seen as light streaks. The droplets successively fragment up to eight times leading to ever-smaller size and their branched light streaks traces are similar to pine needles. The phenomenon involves chemical reactions, thermal decomposition of metastable compounds, gas bubble nucleation and bursting, the formation of liquid ligaments, and droplets. We depict the features of this unique direct fragmentation cascade in nature, where thermal diffusion inside each droplet determines its lifetime. Droplet radius getting exponentially smaller until thermal production and heat losses equilibrate. We compute and document experimentally the number of fragmentation steps, and the overall size of the light streaks as well.

  19. Fragmentation process during Ho:YAG laser lithotripsy revealed by time-resolved imaging

    NASA Astrophysics Data System (ADS)

    Beghuin, Didier; Delacretaz, Guy P.; Schmidlin, Franz R.; Rink, Klaus

    1998-01-01

    The stone fragmentation process induced during Ho:YAG laser lithotripsy was observed by time-resolved flash video imaging. Possible acoustic transient occurrence was simultaneously monitored with a PVDF needle hydrophone. We used artificial and cystine kidney stones. We observed that, although the fragmentation process is accompanied with the formation of a cavitation bubble, cavitation has a minimal incidence on stone fragmentation. Fragment ejection is mainly due to a direct laser stone heating and vaporization of stone organic constituents and interstitial water. The minimal effect of the cavitation bubble for fragmentation is confirmed by acoustic transients measurements, which reveal weak pressure transients. This is in contrast with the fragmentation mechanisms induced by laser of shorter pulse duration.

  20. Effects of forest fragmentation on brood parasitism and nest predation in eastern and western landscapes

    USGS Publications Warehouse

    Cavitt, J.F.; Martin, T.E.

    2002-01-01

    The fragmentation of North American forests by agriculture and other human activities may negatively impact the demographic processes of birds through increases in nest predation and brood parasitism. In fact, the effects of fragmentation on demographic processes are thought to be a major underlying cause of long-term population declines of many bird species. However, much of our understanding of the demographic consequences of fragmentation has come from research conducted in North America east of the Rocky Mountains. Thus, results obtained from these studies may not be applicable to western landscapes, where habitats are often naturally heterogeneous due to topographic variation and periodic fire. We utilized data from a large database of nest records (>10,000) collected at sites both east and west of the Rocky Mountains to determine if the effects of fragmentation are consistent across broad geographic regions. We found that forest fragmentation tended to increase the frequency of brood parasitism by Brown-headed Cowbirds (Molothrus ater) east of the Rockies but we were unable to detect a significant difference in the West. Within the eastern United States, nest predation rates were consistently higher within fragmented sites relative to unfragmented sites. Yet, in the West, fragmentation resulted in a decrease in nest predation relative to unfragmented sites. This is perhaps accounted for by differential responses of the local predator community to fragmentation. Our results suggest that the effects of fragmentation may not be consistent across broad geographic regions and that the effects of fragmentation may depend on dynamics within local landscapes.

  1. Effects of prairie fragmentation on the nest success of breeding birds in the midcontinental United States

    USGS Publications Warehouse

    Herkert, J.R.; Reinking, D.L.; Wiedenfeld, D.A.; Winter, M.; Zimmerman, J.L.; Jensen, W.E.; Finck, E.J.; Koford, Rolf R.; Wolfe, D.H.; Sherrod, S.K.; Jenkins, M.A.; Faaborg, J.; Robinson, S.K.

    2003-01-01

    Grassland fragmentation and habitat loss are hypothesized to be contributing to widespread grassland bird declines in North America due to the adverse effects of fragmentation on breeding bird abundance and reproductive success. To assess the effects of fragmentation on the reproductive success of grassland birds, we measured rates of nest predation and brood parasitism for four species of birds (Grasshopper Sparrow [Ammodramus savannaru], Henslow's Sparrow[Ammodramus henslowii], Eastern Meadowlark [Sturnella magna], and Dickcissel [Spiza Americana]) in 39 prairie fragments ranging from 24 to >40,000 ha in size in five states in the mid-continental United States. Throughout the region, nest-predation rates were significantly influenced by habitat fragmentation. Nest predation was highest in small (1000 ha) prairie fragments. Rates of brood parasitism by Brown-headed Cowbirds (Molothrus ater), however, were not consistently related to fragment size and instead were more strongly related to regional cowbird abundance, being significantly higher in regions with high cowbird abundance. Differences in nest-predation rates between large fragments (54-68% of all nests lost to predators) and small fragments (78-84% lost to predators) suggest that fragmentation of prairie habitats may be contributing to regional declines of grassland birds. Maintaining grassland bird populations, therefore, may require protection and restoration of large prairie areas.

  2. Ternary fission of nuclei into comparable fragments

    SciTech Connect

    Karpeshin, F. F.

    2015-07-15

    The problem of nuclear fission into three comparable fragments is considered. A mechanism of true ternary fission is proposed. In contrast to sequential fission, where the three fragments arise upon two sequential events of binary fission, the mechanism in question relies on a scenario that originally involves fission into three fragments. This mechanism is driven by a hexadecapole deformation of the fissioning nucleus, in contrast to binary fission associated with quadrupole vibrations of the nuclear surface. The fragment-mass ratios are estimated. The dynamics of formation of collinear fragments and their subsequent motion in opposite directions is traced. The calculated probability of true ternary fission complies with observed values.

  3. Ternary fission of nuclei into comparable fragments

    NASA Astrophysics Data System (ADS)

    Karpeshin, F. F.

    2015-07-01

    The problem of nuclear fission into three comparable fragments is considered. A mechanism of true ternary fission is proposed. In contrast to sequential fission, where the three fragments arise upon two sequential events of binary fission, the mechanism in question relies on a scenario that originally involves fission into three fragments. This mechanism is driven by a hexadecapole deformation of the fissioning nucleus, in contrast to binary fission associated with quadrupole vibrations of the nuclear surface. The fragment-mass ratios are estimated. The dynamics of formation of collinear fragments and their subsequent motion in opposite directions is traced. The calculated probability of true ternary fission complies with observed values.

  4. Multiple ionization and fragmentation of isolated pyrene and coronene molecules in collision with ions

    SciTech Connect

    Lawicki, A.; Rousseau, P.; Capron, M.; Maisonny, R.; Maclot, S.; Adoui, L.; Huber, B. A.; Holm, A. I. S.; Seitz, F.; Johansson, H. A. B.; Rosen, S.; Schmidt, H. T.; Zettergren, H.; Cederquist, H.; Manil, B.

    2011-02-15

    The interaction of multiply charged ions (He{sup 2+}, O{sup 3+}, and Xe{sup 20+}) with gas-phase pericondensed polycyclic aromatic hydrocarbon (PAH) molecules of coronene (C{sub 24}H{sub 12}) and pyrene (C{sub 16}H{sub 10}) is studied for low-velocity collisions (v{<=}0.6 a.u.). The mass spectrometric analysis shows that singly and up to quadruply charged intact molecules are important reaction products. The relative experimental yields are compared with the results of a simple classical over-the-barrier model. For higher molecular charge states, the experimental yields decrease much more strongly than the model predictions due to the instabilities of the multiply charged PAH molecules. Even-odd oscillations with the number of carbon atoms, n, in the intensity distributions of the C{sub n}H{sub x}{sup +} fragments indicate a linear chain structure of the fragments similar to those observed for ion-C{sub 60} collisions. The latter oscillations are known to be due to dissociation energy differences between even- and odd-n C{sub n}-chain molecules. For PAH molecules, the average numbers of H atoms attached to the C{sub n}H{sub x} chains are larger for even-n reflecting acetylenic bond systems.

  5. Sub-fragmentation of structural reactive material casings under explosion

    NASA Astrophysics Data System (ADS)

    Zhang, Fan; Gauthier, Maxime; Cojocaru, Cristian

    2017-01-01

    A concept of reactive hot spots intruded in a thick, structural reactive material casing was investigated to generate fine fragments for efficient energy release from casing material under explosive loading. This was achieved through distributing micro MoO3 particles into a granular Al casing, made by hot isostatic pressing, in a fuel-rich ratio of 10Al+MoO3. Reaction of Al and MoO3 during casing primary or secondary fragmentation creates heat and gas products to form micro-scale hot spots, whose expansion initiates local fractures leading to fine fragments of the rest of Al. Explosion experiments, using a 4.4 cm diameter cased charge with a casing-to-explosive mass ratio of 1.78 in a 2.1 m3 cylindrical chamber, demonstrated the presence of fine fragments and more efficient fragment combustion to augment air blast, as compared to a baseline pure Al-cased charge, thus indicating the feasibility of the concept.

  6. Does habitat fragmentation influence nest predation in the shortgrass prairie?

    USGS Publications Warehouse

    Howard, M.N.; Skagen, S.K.; Kennedy, P.L.

    2001-01-01

    We examined the effects of habitat fragmentation and vegetation structure of shortgrass prairie and Conservation Reserve Program (CRP) lands on predation rates of artificial and natural nests in northeastern Colorado. The CRP provides federal payments to landowners to take highly erodible cropland out of agricultural production. In our study area, CRP lands have been reseeded primarily with non-native grasses, and this vegetation is taller than native shortgrass prairie. We measured three indices of habitat fragmentation (patch size, degree of matrix fragmentation, and distance from edge), none of which influenced mortality rates of artificial or natural nests. Vegetation structure did influence predation rates of artificial nests; daily mortality decreased significantly with increasing vegetation height. Vegetation structure did not influence predation rates of natural nests. CRP lands and shortgrass sites did not differ with respect to mortality rates of artificial nests. Our study area is only moderately fragmented; 62% of the study area is occupied by native grassland. We conclude that the extent of habitat fragmentation in our study area does not result in increased predation in remaining patches of shortgrass prairie habitat.

  7. Impact of numerical models on fragmentation processes

    NASA Astrophysics Data System (ADS)

    Renouf, Mathieu; Gezahengn, Belien; Abbas, Micheline; Bourgeois, Florent

    2013-06-01

    Simulated fragmentation process in granular assemblies is a challenging problem which date back the beginning of the 90'. If first approaches have focus on the fragmentation on a single particle, with the development of robust, fast numerical method is is possible today to simulated such process in a large collection of particles. But the question of the fragmentation problem is still open: should the fragmentation be done dynamically (one particle becoming two fragments) and according which criterion or should the fragment paths be defined initially and which is the impact of the discretization and the model of fragments? The present contribution proposes to investigate the second aspect i.e. the impact of fragment modeling on the fragmentation processes. First to perform such an analysis, the geometry of fragments (disks/sphere or polygon/polyhedra), their behavior (rigid/deformable) and the law governing their interactions are investigated. Then such model will be used in a grinding application where the evolution of fragments and impact on the behavior of the whole packing are investigate.

  8. Fragmentation in filamentary molecular clouds

    NASA Astrophysics Data System (ADS)

    Contreras, Yanett; Garay, Guido; Rathborne, Jill M.; Sanhueza, Patricio

    2016-02-01

    Recent surveys of dust continuum emission at sub-mm wavelengths have shown that filamentary molecular clouds are ubiquitous along the Galactic plane. These structures are inhomogeneous, with overdensities that are sometimes associated with infrared emission and active of star formation. To investigate the connection between filaments and star formation, requires an understanding of the processes that lead to the fragmentation of filaments and a determination of the physical properties of the overdensities (clumps). In this paper, we present a multiwavelength study of five filamentary molecular clouds, containing several clumps in different evolutionary stages of star formation. We analyse the fragmentation of the filaments and derive the physical properties of their clumps. We find that the clumps in all filaments have a characteristic spacing consistent with the prediction of the `sausage' instability theory, regardless of the complex morphology of the filaments or their evolutionary stage. We also find that most clumps have sufficient mass and density to form high-mass stars, supporting the idea that high-mass stars and clusters form within filaments.

  9. Reframing landscape fragmentation's effects on ecosystem services.

    PubMed

    Mitchell, Matthew G E; Suarez-Castro, Andrés F; Martinez-Harms, Maria; Maron, Martine; McAlpine, Clive; Gaston, Kevin J; Johansen, Kasper; Rhodes, Jonathan R

    2015-04-01

    Landscape structure and fragmentation have important effects on ecosystem services, with a common assumption being that fragmentation reduces service provision. This is based on fragmentation's expected effects on ecosystem service supply, but ignores how fragmentation influences the flow of services to people. Here we develop a new conceptual framework that explicitly considers the links between landscape fragmentation, the supply of services, and the flow of services to people. We argue that fragmentation's effects on ecosystem service flow can be positive or negative, and use our framework to construct testable hypotheses about the effects of fragmentation on final ecosystem service provision. Empirical efforts to apply and test this framework are critical to improving landscape management for multiple ecosystem services.

  10. Mass and charge distributions in iron-induced reactions and excitation energy division between the fragments of the 672-MeV 56Fe + 165Ho reaction

    SciTech Connect

    Madani, Houria

    1993-01-01

    The projectile-like and target-like fragments produced by the 12-MeV/nucleon 56Fe + 165Ho reaction were detected in coincidence. The measured parameters were the mass, charge, kinetic energy scattering angle of the projectile-like fragments, and the scattering angle of the target-like fragments. The mass and charge distributions of the projectile-like fragments were generated as a function of energy loss, and characterized by their centroids, variances, and correlation coefficients. The neutron drift of the measured projectile-like products is mostly due to evaporative processes, while the charge drift is a result of a net transfer of protons from the projectile-like fragment to the target-like fragment. The result is a weak drift of the system towards mass asymmetry. The predictions of two nucleon exchange models are compared to the experimental results of the 672-MeV 56Fe + 165Ho reaction and other Fe-induced reactions. The fairly good agreement between the experimental and theoretical variances verifies the prevalence of a nucleon exchange mechanism in these reactions. The information from the coincidence measurement and two-body kinematics are used to reconstruct the pre-evaporation masses of the projectile-like and target-like fragments of the reaction. Statistical evaporation calculations are used to translate these masses into excitation energies of the primary fragments. The ratio of excitation energy stored in the projectile-Mm fragment decreases with increasing energy loss, in qualitative agreement with previous measurements; however, higher ratios are observed for the 672-MeV 56Fe on 165Ho system.

  11. Mass and charge distributions in iron-induced reactions and excitation energy division between the fragments of the 672-MeV [sup 56]Fe + [sup 165]Ho reaction

    SciTech Connect

    Madani, H.

    1993-01-01

    The projectile-like and target-like fragments produced by the 12-MeV/nucleon [sup 56]Fe + [sup 165]Ho reaction were detected in coincidence. The measured parameters were the mass, charge, kinetic energy scattering angle of the projectile-like fragments, and the scattering angle of the target-like fragments. The mass and charge distributions of the projectile-like fragments were generated as a function of energy loss, and characterized by their centroids, variances, and correlation coefficients. The neutron drift of the measured projectile-like products is mostly due to evaporative processes, while the charge drift is a result of a net transfer of protons from the projectile-like fragment to the target-like fragment. The result is a weak drift of the system towards mass asymmetry. The predictions of two nucleon exchange models are compared to the experimental results of the 672-MeV [sup 56]Fe + [sup 165]Ho reaction and other Fe-induced reactions. The fairly good agreement between the experimental and theoretical variances verifies the prevalence of a nucleon exchange mechanism in these reactions. The information from the coincidence measurement and two-body kinematics are used to reconstruct the pre-evaporation masses of the projectile-like and target-like fragments of the reaction. Statistical evaporation calculations are used to translate these masses into excitation energies of the primary fragments. The ratio of excitation energy stored in the projectile-Mm fragment decreases with increasing energy loss, in qualitative agreement with previous measurements; however, higher ratios are observed for the 672-MeV [sup 56]Fe on [sup 165]Ho system.

  12. Clusters of DNA damage induced by ionizing radiation: Formation of short DNA fragments. I. Theoretical modeling

    SciTech Connect

    Holley, W.R.; Chatterjee, A.

    1996-02-01

    We have developed a general theoretical model for the interaction of ionizing radiation with chromatin. Chromatin is modeled as a 30-nm-diameter solenoidal fiber composed of 20 turns of nucleosomes, 6 nucleosomes per turn. Charged-particle tracks are modeled by partitioning the energy deposition between primary track core, resulting from glancing collisions with 100 eV or less per event, and {delta} rays due to knock-on collisions involving energy transfers > 100 eV. A Monte Carlo simulation incorporates damages due to the following molecular mechanisms: (1) ionization of water molecules leading to the formation of {circ}OH, {circ}H, e{sub aq}, etc.; {circ}OH attack on sugar molecules leading to strand breaks; {circ}OH attack on bases; direct ionization of the sugar molecules leading to strand breaks; direct ionization of the bases. Our calculations predict significant clustering of damage both locally, over regions up to 40 hp and over regions extending to several kilobase pairs. A characteristic feature of the regional damage predicted by our model is the production of short fragments of DNA associated with multiple nearby strand breaks. Such fragments have subsequently been detected experimentally and are reported in an accompanying paper after exposure to both high- and low-LET radiation. The overall measured yields agree well quantitatively with the theoretical predictions. Our theoretical results predict the existence of a strong peak at about 85 bp, which represents the revolution period about the nucleosome. Other peaks at multiples of about 1,000 bp correspond to the periodicity of the particular solenoid model of chromatin used in these calculations. Theoretical results in combination with experimental data on fragmentation spectra may help determine the consensus or average structure of the chromatin fibers in mammalian DNA. 27 refs., 7 figs.

  13. DNA fragmentation in mouse organs during endotoxic shock.

    PubMed Central

    Bohlinger, I.; Leist, M.; Gantner, F.; Angermüller, S.; Tiegs, G.; Wendel, A.

    1996-01-01

    The systemic inflammatory response syndrome has still an unpredictable outcome, and patients often die of multiple organ failure despite circulatory stabilization therapy. The still incompletely understood pathophysiological mechanisms include organ damage due to direct toxic actions of cytokines elicited by overactivation of the host response. To study this process of organ failure in experimental septic shock, we injected mice with a lethal dose of endotoxin and examined apoptotic and necrotic tissue damage biochemically, histologically, and ultrastructurally. Endotoxin administration caused oligonucleosomal as well as random DNA fragmentation in liver, lung, kidney, and intestine. In the liver, DNA fragmentation was not restricted to hepatocytes but also occurred in nonparenchymal cells. The DNA fragmentation was mediated by tumor necrosis factor and attenuated by endogenous nitric oxide release. Unlike the situation in D-galactosamine-sensitized mice, in which injection or release of tumor necrosis factor causes massive hepatocyte apoptosis, liver failure due to high doses of endotoxin was characterized by single-cell necrosis, a low incidence of apoptosis, and simultaneous damage to nonparenchymal cells. We conclude that, even though endotoxin causes cytokine-mediated DNA fragmentation in several organs including the liver, hepatocyte apoptosis itself seems to be a minor phenomenon in high-dose endotoxic shock in mice. Images Figure 2 Figure 3 Figure 4 Figure 5 PMID:8863685

  14. Asteroid fragmentation approaches for modeling atmospheric energy deposition

    NASA Astrophysics Data System (ADS)

    Register, Paul J.; Mathias, Donovan L.; Wheeler, Lorien F.

    2017-03-01

    During asteroid entry, energy is deposited in the atmosphere through thermal ablation and momentum-loss due to aerodynamic drag. Analytic models of asteroid entry and breakup physics are used to compute the energy deposition, which can then be compared against measured light curves and used to estimate ground damage due to airburst events. This work assesses and compares energy deposition results from four existing approaches to asteroid breakup modeling, and presents a new model that combines key elements of those approaches. The existing approaches considered include a liquid drop or "pancake" model where the object is treated as a single deforming body, and a set of discrete fragment models where the object breaks progressively into individual fragments. The new model incorporates both independent fragments and aggregate debris clouds to represent a broader range of fragmentation behaviors and reproduce more detailed light curve features. All five models are used to estimate the energy deposition rate versus altitude for the Chelyabinsk meteor impact, and results are compared with an observationally derived energy deposition curve. Comparisons show that four of the five approaches are able to match the overall observed energy deposition profile, but the features of the combined model are needed to better replicate both the primary and secondary peaks of the Chelyabinsk curve.

  15. Measurement of charm fragmentation fractions in photoproduction at HERA

    NASA Astrophysics Data System (ADS)

    Abramowicz, H.; Abt, I.; Adamczyk, L.; Adamus, M.; Aggarwal, R.; Antonelli, S.; Antonioli, P.; Antonov, A.; Arneodo, M.; Arslan, O.; Aushev, V.; Aushev, Y.; Bachynska, O.; Bamberger, A.; Barakbaev, A. N.; Barbagli, G.; Bari, G.; Barreiro, F.; Bartosik, N.; Bartsch, D.; Basile, M.; Behnke, O.; Behr, J.; Behrens, U.; Bellagamba, L.; Bertolin, A.; Bhadra, S.; Bindi, M.; Blohm, C.; Bokhonov, V.; Bold, T.; Boos, E. G.; Borras, K.; Boscherini, D.; Bot, D.; Brock, I.; Brownson, E.; Brugnera, R.; Brümmer, N.; Bruni, A.; Bruni, G.; Brzozowska, B.; Bussey, P. J.; Bylsma, B.; Caldwell, A.; Capua, M.; Carlin, R.; Catterall, C. D.; Chekanov, S.; Chwastowski, J.; Ciborowski, J.; Ciesielski, R.; Cifarelli, L.; Cindolo, F.; Contin, A.; Cooper-Sarkar, A. M.; Coppola, N.; Corradi, M.; Corriveau, F.; Costa, M.; D'Agostini, G.; Corso, F. Dal; del Peso, J.; Dementiev, R. K.; De Pasquale, S.; Derrick, M.; Devenish, R. C. E.; Dobur, D.; Dolgoshein, B. A.; Dolinska, G.; Doyle, A. T.; Drugakov, V.; Durkin, L. S.; Dusini, S.; Eisenberg, Y.; Ermolov, P. F.; Eskreys, A.; Fang, S.; Fazio, S.; Ferrando, J.; Ferrero, M. I.; Figiel, J.; Foster, B.; Gach, G.; Galas, A.; Gallo, E.; Garfagnini, A.; Geiser, A.; Gialas, I.; Gizhko, A.; Gladilin, L. K.; Gladkov, D.; Glasman, C.; Gogota, O.; Golubkov, Yu. A.; Göttlicher, P.; Grabowska-Bold, I.; Grebenyuk, J.; Gregor, I.; Grigorescu, G.; Grzelak, G.; Gueta, O.; Guzik, M.; Gwenlan, C.; Haas, T.; Hain, W.; Hamatsu, R.; Hart, J. C.; Hartmann, H.; Hartner, G.; Hilger, E.; Hochman, D.; Hori, R.; Hüttmann, A.; Ibrahim, Z. A.; Iga, Y.; Ingbir, R.; Ishitsuka, M.; Iudin, A.; Jakob, H.-P.; Januschek, F.; Jones, T. W.; Jüngst, M.; Kadenko, I.; Kahle, B.; Kananov, S.; Kanno, T.; Karshon, U.; Karstens, F.; Katkov, I. I.; Kaur, M.; Kaur, P.; Keramidas, A.; Khein, L. A.; Kim, J. Y.; Kisielewska, D.; Kitamura, S.; Klanner, R.; Klein, U.; Koffeman, E.; Kondrashova, N.; Kononenko, O.; Kooijman, P.; Korol, Ie.; Korzhavina, I. A.; Kotanski, A.; Kötz, U.; Kovalchuk, N.; Kowalski, H.; Kuprash, O.; Kuze, M.; Lee, A.; Levchenko, B. B.; Levy, A.; Libov, V.; Limentani, S.; Ling, T. Y.; Lisovyi, M.; Lobodzinska, E.; Lohmann, W.; Löhr, B.; Lohrmann, E.; Long, K. R.; Longhin, A.; Lontkovskyi, D.; Lukina, O. Yu.; Maeda, J.; Magill, S.; Makarenko, I.; Malka, J.; Mankel, R.; Margotti, A.; Marini, G.; Martin, J. F.; Mastroberardino, A.; Mattingly, M. C. K.; Melzer-Pellmann, I.-A.; Mergelmeyer, S.; Miglioranzi, S.; Mohamad Idris, F.; Monaco, V.; Montanari, A.; Morris, J. D.; Mujkic, K.; Musgrave, B.; Myronenko, V.; Nagano, K.; Namsoo, T.; Nania, R.; Nigro, A.; Ning, Y.; Nobe, T.; Notz, D.; Nowak, R. J.; Nuncio-Quiroz, A. E.; Oh, B. Y.; Okazaki, N.; Olkiewicz, K.; Onishchuk, Yu.; Papageorgiu, K.; Parenti, A.; Paul, E.; Pawlak, J. M.; Pawlik, B.; Pelfer, P. G.; Pellegrino, A.; Perlanski, W.; Perrey, H.; Piotrzkowski, K.; Plucinski, P.; Pokrovskiy, N. S.; Polini, A.; Proskuryakov, A. S.; Przybycien, M.; Raval, A.; Reeder, D. D.; Reisert, B.; Ren, Z.; Repond, J.; Ri, Y. D.; Robertson, A.; Roloff, P.; Rubinsky, I.; Ruspa, M.; Sacchi, R.; Samson, U.; Sartorelli, G.; Savin, A. A.; Saxon, D. H.; Schioppa, M.; Schlenstedt, S.; Schleper, P.; Schmidke, W. B.; Schneekloth, U.; Schönberg, V.; Schörner-Sadenius, T.; Schwartz, J.; Sciulli, F.; Shcheglova, L. M.; Shehzadi, R.; Shevchenko, R.; Shimizu, S.; Shkola, O.; Singh, I.; Skillicorn, I. O.; Slominski, W.; Smith, W. H.; Sola, V.; Solano, A.; Son, D.; Sosnovtsev, V.; Spiridonov, A.; Stadie, H.; Stanco, L.; Stefaniuk, N.; Stern, A.; Stewart, T. P.; Stifutkin, A.; Stopa, P.; Suchkov, S.; Susinno, G.; Suszycki, L.; Sztuk-Dambietz, J.; Szuba, D.; Szuba, J.; Tapper, A. D.; Tassi, E.; Terrón, J.; Theedt, T.; Tiecke, H.; Tokushuku, K.; Tomaszewska, J.; Trofymov, A.; Trusov, V.; Tsurugai, T.; Turcato, M.; Turkot, O.; Tymieniecka, T.; Vázquez, M.; Verbytskyi, A.; Viazlo, O.; Vlasov, N. N.; Walczak, R.; Wan Abdullah, W. A. T.; Whitmore, J. J.; Wichmann, K.; Wiggers, L.; Wing, M.; Wlasenko, M.; Wolf, G.; Wolfe, H.; Wrona, K.; Yagües-Molina, A. G.; Yamada, S.; Yamazaki, Y.; Yoshida, R.; Youngman, C.; Zakharchuk, N.; Żarnecki, A. F.; Zawiejski, L.; Zenaiev, O.; Zeuner, W.; Zhautykov, B. O.; Zhmak, N.; Zichichi, A.; Zolkapli, Z.; Zotkin, D. S.

    2013-09-01

    The production of D 0, D *+, D +, and charm hadrons and their antiparticles in ep scattering at HERA has been studied with the ZEUS detector, using a total integrated luminosity of 372 pb-1. The fractions of charm quarks hadronising into a particular charm hadron were derived. In addition, the ratio of neutral to charged D-meson production rates, the fraction of charged D mesons produced in a vector state, and the stangeness-suppression factor have been determined. The measurements have been performed in the photoproduction regime. The charm hadrons were reconstructed in the range of transverse momentum p T > 3 .8 GeV and pseudorapidity | η| < 1 .6. The charm fragmentation fractions are compared to previous results from HERA and from e + e - experiments. The data support the hypothesis that fragmentation is independent of the production process.

  16. Electron Capture by a Hydrated Gaseous Peptide: Effects of Water on Fragmentation and Molecular Survival

    PubMed Central

    Prell, James S.; O'Brien, Jeremy T.; Holm, Anne I. S.; Leib, Ryan D.; Donald, William A.; Williams, Evan R.

    2008-01-01

    The effects of water on electron capture dissociation products, molecular survival, and recombination energy are investigated for diprotonated Lys-Tyr-Lys solvated by between zero and 25 water molecules. For peptide ions with between 12 and 25 water molecules attached, electron capture results in a narrow distribution of product ions corresponding to primarily the loss of 10-12 water molecules from the reduced precursor. From these data, the recombination energy (RE) is determined to be equal to the energy that is lost by evaporating on average 10.7 water molecules, or 4.3 eV. Because water stabilizes ions, this value is a lower limit to the RE of the unsolvated ion, but it indicates that the majority of the available RE is deposited into internal modes of the peptide ion. Plotting the fragment ion abundances for ions formed from precursors with fewer than 11 water molecules as a function of hydration extent results in an energy resolved breakdown curve from which the appearance energies of the b2+, y2+, z2+•, c2+, and (KYK + H)+ fragment ions formed from this peptide ion can be obtained; these values are 78, 88, 42, 11, and 9 kcal/mol, respectively. The propensity for H atom loss and ammonia loss from the precursor changes dramatically with the extent of hydration, and this change in reactivity can be directly attributed to a “caging” effect by the water molecules. These are the first experimental measurements of the RE and appearance energies of fragment ions due to electron capture dissociation of a multiply charged peptide. This novel ion nanocalorimetry technique can be applied more generally to other exothermic reactions that are not readily accessible to investigation by more conventional thermochemical methods. PMID:18761457

  17. Fragment profiling of low molecular weight heparins using reversed phase ion pair liquid chromatography-electrospray mass spectrometry.

    PubMed

    Xu, Xiaohui; Li, Daoyuan; Chi, Lequan; Du, Xuzhao; Bai, Xue; Chi, Lianli

    2015-04-30

    Low molecular weight heparins (LMWHs) are linear and highly charged carbohydrate polymers prepared by chemical or enzymatic depolymerization of heparin. Compared to unfractionated heparin (UFH), LMWHs are prevalently used as clinical anticoagulant drugs due to their lower side effects and better bioavailability. The work presented herein provides a rapid and powerful fragment mapping method for structural characterization of LMWHs. The chain fragments of two types of LMWHs, enoxaparin and nadroparin, were generated by controlled enzymatic digestion with each of heparinase I (Hep I, Enzyme Commission (EC) # 4.2.2.7), heparinase II (Hep II, no EC # assigned) and heparinase III (Hep III, EC # 4.2.2.8). Reversed phase ion pair high performance liquid chromatography (RPIP-HPLC) coupled with electrospray ion trap time-of-flight mass spectrometry (ESI-IT-TOF-MS) was used to profile the oligosaccharide chains ranging from disaccharides to decasaccharides. A database containing all theoretical structural compositions was established to assist the mass spectra interpretation. The six digests derived by three enzymes from two types of LMWHs exhibited distinguishable fingerprinting patterns. And a total of 94 enoxaparin fragments and 109 nadroparin fragments were detected and identified. Besides the common LMWH oligosaccharides, many components containing characteristic LMWH structures such as saturated L-idopyranosuronic acid, 2,5-anhydro-D-mannitol, 1,6-anhydro-D-aminopyranose, as well as odd number oligosaccharides were also revealed. Quantitative comparison of major components derived from innovator and generic nadroparin products was presented. This approach to profile LMWHs' fragments offers a highly reproducible, high resolution and information-rich tool for evaluating the quality of this category of anticoagulant drugs or comparing structural similarities among samples from various sources.

  18. Ryanodine receptor fragmentation and sarcoplasmic reticulum Ca2+ leak after one session of high-intensity interval exercise.

    PubMed

    Place, Nicolas; Ivarsson, Niklas; Venckunas, Tomas; Neyroud, Daria; Brazaitis, Marius; Cheng, Arthur J; Ochala, Julien; Kamandulis, Sigitas; Girard, Sebastien; Volungevičius, Gintautas; Paužas, Henrikas; Mekideche, Abdelhafid; Kayser, Bengt; Martinez-Redondo, Vicente; Ruas, Jorge L; Bruton, Joseph; Truffert, Andre; Lanner, Johanna T; Skurvydas, Albertas; Westerblad, Håkan

    2015-12-15

    High-intensity interval training (HIIT) is a time-efficient way of improving physical performance in healthy subjects and in patients with common chronic diseases, but less so in elite endurance athletes. The mechanisms underlying the effectiveness of HIIT are uncertain. Here, recreationally active human subjects performed highly demanding HIIT consisting of 30-s bouts of all-out cycling with 4-min rest in between bouts (≤3 min total exercise time). Skeletal muscle biopsies taken 24 h after the HIIT exercise showed an extensive fragmentation of the sarcoplasmic reticulum (SR) Ca(2+) release channel, the ryanodine receptor type 1 (RyR1). The HIIT exercise also caused a prolonged force depression and triggered major changes in the expression of genes related to endurance exercise. Subsequent experiments on elite endurance athletes performing the same HIIT exercise showed no RyR1 fragmentation or prolonged changes in the expression of endurance-related genes. Finally, mechanistic experiments performed on isolated mouse muscles exposed to HIIT-mimicking stimulation showed reactive oxygen/nitrogen species (ROS)-dependent RyR1 fragmentation, calpain activation, increased SR Ca(2+) leak at rest, and depressed force production due to impaired SR Ca(2+) release upon stimulation. In conclusion, HIIT exercise induces a ROS-dependent RyR1 fragmentation in muscles of recreationally active subjects, and the resulting changes in muscle fiber Ca(2+)-handling trigger muscular adaptations. However, the same HIIT exercise does not cause RyR1 fragmentation in muscles of elite endurance athletes, which may explain why HIIT is less effective in this group.

  19. Ryanodine receptor fragmentation and sarcoplasmic reticulum Ca2+ leak after one session of high-intensity interval exercise

    PubMed Central

    Place, Nicolas; Ivarsson, Niklas; Venckunas, Tomas; Neyroud, Daria; Brazaitis, Marius; Cheng, Arthur J.; Ochala, Julien; Kamandulis, Sigitas; Girard, Sebastien; Volungevičius, Gintautas; Paužas, Henrikas; Mekideche, Abdelhafid; Kayser, Bengt; Martinez-Redondo, Vicente; Bruton, Joseph; Truffert, Andre; Lanner, Johanna T.; Skurvydas, Albertas; Westerblad, Håkan

    2015-01-01

    High-intensity interval training (HIIT) is a time-efficient way of improving physical performance in healthy subjects and in patients with common chronic diseases, but less so in elite endurance athletes. The mechanisms underlying the effectiveness of HIIT are uncertain. Here, recreationally active human subjects performed highly demanding HIIT consisting of 30-s bouts of all-out cycling with 4-min rest in between bouts (≤3 min total exercise time). Skeletal muscle biopsies taken 24 h after the HIIT exercise showed an extensive fragmentation of the sarcoplasmic reticulum (SR) Ca2+ release channel, the ryanodine receptor type 1 (RyR1). The HIIT exercise also caused a prolonged force depression and triggered major changes in the expression of genes related to endurance exercise. Subsequent experiments on elite endurance athletes performing the same HIIT exercise showed no RyR1 fragmentation or prolonged changes in the expression of endurance-related genes. Finally, mechanistic experiments performed on isolated mouse muscles exposed to HIIT-mimicking stimulation showed reactive oxygen/nitrogen species (ROS)-dependent RyR1 fragmentation, calpain activation, increased SR Ca2+ leak at rest, and depressed force production due to impaired SR Ca2+ release upon stimulation. In conclusion, HIIT exercise induces a ROS-dependent RyR1 fragmentation in muscles of recreationally active subjects, and the resulting changes in muscle fiber Ca2+-handling trigger muscular adaptations. However, the same HIIT exercise does not cause RyR1 fragmentation in muscles of elite endurance athletes, which may explain why HIIT is less effective in this group. PMID:26575622

  20. The effects of landscape variables on the species-area relationship during late-stage habitat fragmentation.

    PubMed

    Hu, Guang; Wu, Jianguo; Feeley, Kenneth J; Xu, Gaofu; Yu, Mingjian

    2012-01-01

    Few studies have focused explicitly on the later stages of the fragmentation process, or "late-stage fragmentation", during which habitat area and patch number decrease simultaneously. This lack of attention is despite the fact that many of the anthropogenically fragmented habitats around the world are, or soon will be, in late-stage fragmentation. Understanding the ecological processes and patterns that occur in late-stage fragmentation is critical to protect the species richness in these fragments. We investigated plant species composition on 152 islands in the Thousand Island Lake, China. A random sampling method was used to create simulated fragmented landscapes with different total habitat areas and numbers of patches mimicking the process of late-stage fragmentation. The response of the landscape-scale species-area relationship (LSAR) to fragmentation per se was investigated, and the contribution of inter-specific differences in the responses to late-stage fragmentation was tested. We found that the loss of species at small areas was compensated for by the effects of fragmentation per se, i.e., there were weak area effects on species richness in landscapes due to many patches with irregular shapes and high variation in size. The study also illustrated the importance of inter-specific differences for responses to fragmentation in that the LSARs of rare and common species were differently influenced by the effects of fragmentation per se. In conclusion, our analyses at the landscape scale demonstrate the significant influences of fragmentation per se on area effects and the importance of inter-specific differences for responses to fragmentation in late-stage fragmentation. These findings add to our understanding of the effects of habitat fragmentation on species diversity.

  1. Soft-x-ray fragmentation studies of molecular ions

    NASA Astrophysics Data System (ADS)

    Wolf, Andreas; Pedersen, Henrik B.; Lammich, Lutz; Jordon-Thaden, Brandon; Altevogt, Simon; Domesle, Christian; Hergenhahn, Uwe; Förstel, Marko; Heber, Oded

    2010-10-01

    Imaging of photofragments from molecular ions after irradiation by soft x-ray photons has been realized at the ion beam infrastructure TIFF set up at the FLASH facility. Photodissociation of the two-electron system HeH+ at 38.7 eV revealed the electronic excitations and the charge-state ratios for the products of this process, reflecting the non-adiabatic dissociation dynamics through multiple avoided crossings among the HeH+ Rydberg potential curves. Dissociative ionization of the protonated water molecules H3O+ and H5O+2 at 90 eV revealed the main fragmentation pathways after the production of valence vacancies in these ionic species, which include a strong three-body channel with a neutral fragment (OH + H+ + H+) in H3O+ photolysis and a significant two-body fragmentation channel (H3O++ H2O+) in H5O+2 photolysis. The measurements yield absolute cross sections and fragment angular distributions. Increased precision and sensitivity of the technique were realized in recent developments, creating a tool for exploring x-ray excited molecular states under highly controlled target conditions challenging detailed theoretical understanding.

  2. Fragmentation of 3-hydroxyflavone; a computational and mass spectrometric study.

    PubMed

    Lewars, Errol G; March, Raymond E

    2007-01-01

    In a recent study of the collision-induced dissociation of protonated and deprotonated molecules of 3-, 5-, 6-, 7-, 2'-, 3'- and 4'-hydroxyflavone, it was observed that the ratio, gamma, of the propensities for cross-ring cleavage (CRC) to ring opening (RO) varied by a factor of 660, i.e., from 0.014:1 (for deprotonated 3-hydroxyflavone) to 9.27:1 (for deprotonated 5-hydroxyflavone). An explanation for the variation of gamma was presented in terms of experimental NMR (13)C and (1)H spectra modified by computation. Deprotonated 3-hydroxyflavone exhibited the highest ion signal intensity for fragmentation following RO relative to that for CRC in that gamma = 0.014:1. Because no chemical computations of the fragmentation of protonated and deprotonated monohydroxyflavone molecules have been carried out thus far, the basis on which fragmentation mechanisms for deprotonated 3-hydroxyflavone have been proposed is principally chemical intuition. The energy states of product ions formed in the fragmentation of deprotonated 3-hydroxyflavone molecules were computed by the CBS-4M method implemented in Gaussian 03. The overly demanding calculations needed to handle diradicals reliably and directly were circumvented by a process in which each of the bond-breaking reactions was approximated by a process that gave two monoradicals. Bond energies were calculated, with one exception, from the approximation reactions as the energy of products minus the energy of reactants.

  3. Isotopic Effects in Nuclear Fragmentation and GCR Transport Problems

    NASA Technical Reports Server (NTRS)

    Cucinotta, Francis A.

    2002-01-01

    Improving the accuracy of the galactic cosmic ray (GCR) environment and transport models is an important goal in preparing for studies of the projected risks and the efficiency of potential mitigations methods for space exploration. In this paper we consider the effects of the isotopic composition of the primary cosmic rays and the isotopic dependence of nuclear fragmentation cross sections on GCR transport models. Measurements are used to describe the isotopic composition of the GCR including their modulation throughout the solar cycle. The quantum multiple-scattering approach to nuclear fragmentation (QMSFRG) is used as the data base generator in order to accurately describe the odd-even effect in fragment production. Using the Badhwar and O'Neill GCR model, the QMSFRG model and the HZETRN transport code, the effects of the isotopic dependence of the primary GCR composition and on fragment production for transport problems is described for a complete GCR isotopic-grid. The principle finding of this study is that large errors ( 100%) will occur in the mass-flux spectra when comparing the complete isotopic-grid (141 ions) to a reduced isotopic-grid (59 ions), however less significant errors 30%) occur in the elemental-flux spectra. Because the full isotopic-grid is readily handled on small computer work-stations, it is recommended that they be used for future GCR studies.

  4. Exploring fragment spaces under multiple physicochemical constraints

    NASA Astrophysics Data System (ADS)

    Pärn, Juri; Degen, Jörg; Rarey, Matthias

    2007-06-01

    We present a new algorithm for the enumeration of chemical fragment spaces under constraints. Fragment spaces consist of a set of molecular fragments and a set of rules that specifies how fragments can be combined. Although fragment spaces typically cover an infinite number of molecules, they can be enumerated in case that a physicochemical profile of the requested compounds is given. By using min-max ran