Quantity, composition, and source of sediment collected in sediment traps along the fringing coral reef off Molokai, Hawaii

USGS Publications Warehouse

Bothner, Michael H.; Reynolds, R.L.; Casso, M.A.; Storlazzi, C.D.; Field, M.E.

2006-01-01

Sediment traps were used to evaluate the frequency, cause, and relative intensity of sediment mobility/resuspension along the fringing coral reef off southern Molokai (February 2000–May 2002). Two storms with high rainfall, floods, and exceptionally high waves resulted in sediment collection rates > 1000 times higher than during non-storm periods, primarily because of sediment resuspension by waves. Based on quantity and composition of trapped sediment, floods recharged the reef flat with land-derived sediment, but had a low potential for burying coral on the fore reef when accompanied by high waves.The trapped sediments have low concentrations of anthropogenic metals. The magnetic properties of trapped sediment may provide information about the sources of land-derived sediment reaching the fore reef. The high trapping rate and low sediment cover indicate that coral surfaces on the fore reef are exposed to transient resuspended sediment, and that the traps do not measure net sediment accumulation on the reef surface.

Quantity, composition, and source of sediment collected in sediment traps along the fringing coral reef off Molokai, Hawaii.

PubMed

Bothner, Michael H; Reynolds, Richard L; Casso, Michael A; Storlazzi, Curt D; Field, Michael E

2006-09-01

Sediment traps were used to evaluate the frequency, cause, and relative intensity of sediment mobility/resuspension along the fringing coral reef off southern Molokai (February 2000-May 2002). Two storms with high rainfall, floods, and exceptionally high waves resulted in sediment collection rates>1000 times higher than during non-storm periods, primarily because of sediment resuspension by waves. Based on quantity and composition of trapped sediment, floods recharged the reef flat with land-derived sediment, but had a low potential for burying coral on the fore reef when accompanied by high waves. The trapped sediments have low concentrations of anthropogenic metals. The magnetic properties of trapped sediment may provide information about the sources of land-derived sediment reaching the fore reef. The high trapping rate and low sediment cover indicate that coral surfaces on the fore reef are exposed to transient resuspended sediment, and that the traps do not measure net sediment accumulation on the reef surface.

Snorkelling and trampling in shallow-water fringing reefs: Risk assessment and proposed management strategy

PubMed Central

Hannak, Judith S.; Kompatscher, Sarah; Stachowitsch, Michael; Herler, Jürgen

2011-01-01

Shallow reefs (reef flats <1.5 m) in the northern Red Sea are impacted by growing tourism that includes swimmers, snorkellers and reef walkers but have largely been neglected in past studies. We selected a fringing reef along the lagoon of Dahab (Sinai, Egypt) as a model for a management strategy. Point-intercept line transects were used to determine substrate composition, coral community and condition, and the coral damage index (CDI) was applied. Approximately 84% of the coral colonies showed signs of damage such as breakage, partial mortality or algal overgrowth, especially affecting the most frequent coral genus Acropora. Questionnaires were used to determine the visitors’ socio-economic background and personal attitudes regarding snorkelling, SCUBA-diving and interest in visiting a prospective snorkelling trail. Experiencing nature (97%) was by far the strongest motivation, and interest in further education about reef ecology and skill training was high. Less experienced snorkellers and divers – the target group for further education and skill training – were those most prepared to financially support such a trail. We therefore recommend a guided underwater snorkelling trail and restricting recreational use to a less sensitive ‘ecotourism zone’ while protecting the shallow reef flat. Artificial structures can complete the trail and offer the opportunity to snorkel over deeper areas at unfavourable tide or wind conditions. This approach provides a strategy for the management and conservation of shallow-water reefs, which are facing increasing human impact here and elsewhere. PMID:21708420

Snorkelling and trampling in shallow-water fringing reefs: risk assessment and proposed management strategy.

PubMed

Hannak, Judith S; Kompatscher, Sarah; Stachowitsch, Michael; Herler, Jürgen

2011-10-01

Shallow reefs (reef flats <1.5 m) in the northern Red Sea are impacted by growing tourism that includes swimmers, snorkellers and reef walkers but have largely been neglected in past studies. We selected a fringing reef along the lagoon of Dahab (Sinai, Egypt) as a model for a management strategy. Point-intercept line transects were used to determine substrate composition, coral community and condition, and the coral damage index (CDI) was applied. Approximately 84% of the coral colonies showed signs of damage such as breakage, partial mortality or algal overgrowth, especially affecting the most frequent coral genus Acropora. Questionnaires were used to determine the visitors' socio-economic background and personal attitudes regarding snorkelling, SCUBA-diving and interest in visiting a prospective snorkelling trail. Experiencing nature (97%) was by far the strongest motivation, and interest in further education about reef ecology and skill training was high. Less experienced snorkellers and divers--the target group for further education and skill training--were those most prepared to financially support such a trail. We therefore recommend a guided underwater snorkelling trail and restricting recreational use to a less sensitive 'ecotourism zone' while protecting the shallow reef flat. Artificial structures can complete the trail and offer the opportunity to snorkel over deeper areas at unfavourable tide or wind conditions. This approach provides a strategy for the management and conservation of shallow-water reefs, which are facing increasing human impact here and elsewhere. Copyright © 2011 Elsevier Ltd. All rights reserved.

Spatial variability of sediment transport processes over intra‐ and subtidal timescales within a fringing coral reef system

USGS Publications Warehouse

Pomeroy, Andrew; Lowe, Ryan J.; Ghisalberti, Marco; Winter, Gundula; Storlazzi, Curt D.; Cuttler, Michael V. W.

2018-01-01

Sediment produced on fringing coral reefs that is transported along the bed or in suspension affects ecological reef communities as well as the morphological development of the reef, lagoon, and adjacent shoreline. This study quantified the physical process contribution and relative importance of incident waves, infragravity waves, and mean currents to the spatial and temporal variability of sediment in suspension. Estimates of bed shear stresses demonstrate that incident waves are the key driver of the SSC variability spatially (reef flat, lagoon, and channels) but cannot not fully describe the SSC variability alone. The comparatively small but statistically significant contribution to the bed shear stress by infragravity waves and currents, along with the spatial availability of sediment of a suitable size and volume, is also important. Although intra‐tidal variability in SSC occurs in the different reef zones, the majority of the variability occurs over longer slowly varying (subtidal) time scales, which is related to the arrival of large incident waves at a reef location. The predominant flow pathway, which can transport suspended sediment, consists of cross‐reef flow across the reef flat that diverges in the lagoon and returns offshore through channels. This pathway is primarily due to subtidal variations in wave‐driven flows, but can also be driven alongshore by wind stresses when the incident waves are small. Higher frequency (intra‐tidal) current variability also occur due to both tidal flows, as well as variations in the water depth that influence wave transmission across the reef and wave‐driven currents.

The relative contribution of processes driving variability in flow, shear, and turbidity over a fringing coral reef: West Maui, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Jaffe, B.E.

2008-01-01

High-frequency measurements of waves, currents and water column properties were made on a fringing coral reef off northwest Maui, Hawaii, for 15 months between 2001 and 2003 to aid in understanding the processes governing flow and turbidity over a range of time scales and their contributions to annual budgets. The summer months were characterized by consistent trade winds and small waves, and under these conditions high-frequency internal bores were commonly observed, there was little net flow or turbidity over the fore reef, and over the reef flat net flow was downwind and turbidity was high. When the trade winds waned or the wind direction deviated from the dominant trade wind orientation, strong alongshore flows occurred into the typically dominant wind direction and lower turbidity was observed across the reef. During the winter, when large storm waves impacted the study area, strong offshore flows and high turbidity occurred on the reef flat and over the fore reef. Over the course of a year, trade wind conditions resulted in the greatest net transport of turbid water due to relatively strong currents, moderate overall turbidity, and their frequent occurrence. Throughout the period of study, near-surface current directions over the fore reef varied on average by more than 41?? from those near the seafloor, and the orientation of the currents over the reef flat differed on average by more than 65?? from those observed over the fore reef. This shear occurred over relatively short vertical (order of meters) and horizontal (order of hundreds of meters) scales, causing material distributed throughout the water column, including the particles in suspension causing the turbidity (e.g. sediment or larvae) and/or dissolved nutrients and contaminants, to be transported in different directions under constant oceanographic and meteorologic forcing.

Combined infragravity wave and sea-swell runup over fringing reefs by super typhoon Haiyan

NASA Astrophysics Data System (ADS)

Shimozono, Takenori; Tajima, Yoshimitsu; Kennedy, Andrew B.; Nobuoka, Hisamichi; Sasaki, Jun; Sato, Shinji

2015-06-01

Super typhoon Haiyan struck the Philippines on 8 November 2013, marking one of the strongest typhoons at landfall in recorded history. Extreme storm waves attacked the Pacific coast of Eastern Samar where the violent typhoon first made landfall. Our field survey confirmed that storm overwash heights of 6-14 m above mean sea level were distributed along the southeastern coast and extensive inundation occurred in some coastal villages in spite of natural protection by wide fringing reefs. A wave model based on Boussinesq-type equations is constructed to simulate wave transformation over shallow fringing reefs and validated against existing laboratory data. Wave propagation and runup on the Eastern Samar coast are then reproduced using offshore boundary conditions based on a wave hindcast. The model results suggest that extreme waves on the shore are characterized as a superposition of the infragravity wave and sea-swell components. The balance of the two components is strongly affected by the reef width and beach slope through wave breaking, frictional dissipation, reef-flat resonances, and resonant runup amplification. Therefore, flood characteristics significantly differ from site to site due to a large variation of the two topographic parameters on the hilly coast. Strong coupling of infragravity waves and sea swells produces extreme runup on steep beaches fronted by narrow reefs, whereas the infragravity waves become dominant over wide reefs and they evolve into bores on steep beaches.

Wave-driven Hydrodynamics for Different Reef Geometries and Roughness Scenarios

NASA Astrophysics Data System (ADS)

Franklin, G. L.; Marino-Tapia, I.; Torres-Freyermuth, A.

2013-05-01

In fringing reef systems where a shallow lagoon is present behind the reef crest, wave breaking appears to dominate circulation, controlling numerous key processes such as the transport and dispersion of larvae, nutrients and sediments. Despite their importance, there is a need for more detailed knowledge on the hydrodynamic processes that take place within the surf zone of these systems and the effects different combinations of geometries and roughness have on them. The present study focuses on the use of two-dimensional (2DV) numerical model simulations and data obtained during a field campaign in Puerto Morelos, Quintana Roo, Mexico to better understand the detailed surf zone processes that occur over a fringing reef. The model used is Cornell Breaking Wave and Structures (COBRAS), which solves Reynolds-Averaged Navier-Stokes (RANS) equations. Reef geometries implemented in the model include a reef flat and two different reef crests. The effect of roughness on wave setup, radiation stress, mean flows, and cross-shore spectral evolution for the model results was studied using different roughness coefficients (Nikuradse) and a bathymetric profile obtained in the field using the bottom track option of an Acoustic Doppler Current Profiler. Field data were also analysed for the configuration and roughness of Puerto Morelos. Model results reveal that for all profiles wave setup increased significantly (~22%) with increasing bed roughness, in agreement with previous findings for sandy beaches.For all wave heights and periods studied, increasing roughness also affected spectral wave evolution across the reef, with a significant reduction in energy, particularly at infragravity frequencies. The presence of a reef crest in the profile resulted in differences in behaviour at infragravity frequencies. For example, preliminary results suggest that there is a shift towards higher frequencies as waves progress into the lagoon when a crest is present, something that does not appear to occur over the reef flat. Time-averaged velocities exhibited a dominant onshore flow due to waves at the surface, as is generally reported for coral reefs. Model results also suggest the presence of offshore velocities, which were slightly greater over the reef flat compared to the reef crest. Maximum offshore velocities appear to be more localised in the case of the reef flat whereas they extended over a larger area in the case of the reef crest. In all cases, increased roughness resulted in reduced velocities. These results are important since they concern processes that affect the circulation within the lagoon, which has implications in terms of the lagoon's residence time and hence heat dispersion and exposure to pollutants.

Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai, Hawaii

USGS Publications Warehouse

Piniak, G.A.; Storlazzi, C.D.

2008-01-01

Terrigenous sediment in the nearshore environment can pose both acute and chronic stresses to coral reefs. The reef flat off southern Molokai, Hawaii, typically experiences daily turbidity events, in which trade winds and tides combine to resuspend terrigenous sediment and transport it alongshore. These chronic turbidity events could play a role in restricting coral distribution on the reef flat by reducing the light available for photosynthesis. This study describes the effects of these turbidity events on the Hawaiian reef coral Montipora capitata using in situ diurnal measurements of turbidity, light levels, and chlorophyll fluorescence yield via pulse-amplitude-modulated (PAM) fluorometry. Average surface irradiance was similar in the morning and the afternoon, while increased afternoon turbidity resulted in lower subsurface irradiance, higher fluorescence yield (??F/Fm???), and lower relative electron transport rates (rETR). Model calculations based on observed light extinction coeffecients suggest that in the absence of turbidity events, afternoon subsurface irradiances would be 1.43 times higher than observed, resulting in rETR for M. capitata that are 1.40 times higher.

Hydrodynamic influences on acoustical and optical backscatter in a fringing reef environment

NASA Astrophysics Data System (ADS)

Pawlak, Geno; Moline, Mark A.; Terrill, Eric J.; Colin, Patrick L.

2017-01-01

Observations of hydrodynamics along with optical and acoustical water characteristics in a tropical fringing reef environment reveal a distinct signature associated with flow characteristics and tidal conditions. Flow conditions are dominated by tidal forcing with an offshore component from the reef flat during ebb. Measurements span variable wave conditions enabling identification of wave effects on optical and acoustical water properties. High-frequency acoustic backscatter (6 MHz) is strongly correlated with tidal forcing increasing with offshore directed flow and modulated by wave height, indicating dominant hydrodynamic influence. Backscatter at 300 and 1200 kHz is predominantly diurnal suggesting a biological component. Optical backscatter is closely correlated with high-frequency acoustic backscatter across the range of study conditions. Acoustic backscatter frequency dependence is used along with changes in optical properties to interpret particle-size variations. Changes across wave heights suggest shifts in particle-size distributions with increases in relative concentrations of smaller particles for larger wave conditions. Establishing a connection between the physical processes of a fringing tropical reef and the resulting acoustical and optical signals allows for interpretation and forecasting of the remote sensing response of these phenomena over larger scales.

Response of reef corals on a fringing reef flat to elevated suspended-sediment concentrations: Molokaʻi, Hawaiʻi

PubMed Central

Jokiel, Paul L.; Storlazzi, Curt D.; Field, Michael E.; Lager, Claire V.; Lager, Dan

2014-01-01

A long-term (10 month exposure) experiment on effects of suspended sediment on the mortality, growth, and recruitment of the reef corals Montipora capitata and Porites compressa was conducted on the shallow reef flat off south Molokaʻi, Hawaiʻi. Corals were grown on wire platforms with attached coral recruitment tiles along a suspended solid concentration (SSC) gradient that ranged from 37 mg l−1 (inshore) to 3 mg l−1 (offshore). Natural coral reef development on the reef flat is limited to areas with SSCs less than 10 mg l−1 as previously suggested in the scientific literature. However, the experimental corals held at much higher levels of turbidity showed surprisingly good survivorship and growth. High SSCs encountered on the reef flat reduced coral recruitment by one to three orders of magnitude compared to other sites throughout Hawaiʻi. There was a significant correlation between the biomass of macroalgae attached to the wire growth platforms at the end of the experiment and percentage of the corals showing mortality. We conclude that lack of suitable hard substrate, macroalgal competition, and blockage of recruitment on available substratum are major factors accounting for the low natural coral coverage in areas of high turbidity. The direct impact of high turbidity on growth and mortality is of lesser importance. PMID:25653896

Response of reef corals on a fringing reef flat to elevated suspended-sediment concentrations: Moloka‘i, Hawai‘i

USGS Publications Warehouse

Jokiel, Paul L.; Rodgers, Ku'ulei S.; Storlazzi, Curt D.; Field, Michael E.; Lager, Claire V.; Lager, Dan

2014-01-01

A long-term (10 month exposure) experiment on effects of suspended sediment on the mortality, growth, and recruitment of the reef corals Montipora capitata and Porites compressa was conducted on the shallow reef flat off south Molokaʻi, Hawaiʻi. Corals were grown on wire platforms with attached coral recruitment tiles along a suspended solid concentration (SSC) gradient that ranged from 37 mg l−1 (inshore) to 3 mg l−1(offshore). Natural coral reef development on the reef flat is limited to areas with SSCs less than 10 mg l−1 as previously suggested in the scientific literature. However, the experimental corals held at much higher levels of turbidity showed surprisingly good survivorship and growth. High SSCs encountered on the reef flat reduced coral recruitment by one to three orders of magnitude compared to other sites throughout Hawaiʻi. There was a significant correlation between the biomass of macroalgae attached to the wire growth platforms at the end of the experiment and percentage of the corals showing mortality. We conclude that lack of suitable hard substrate, macroalgal competition, and blockage of recruitment on available substratum are major factors accounting for the low natural coral coverage in areas of high turbidity. The direct impact of high turbidity on growth and mortality is of lesser importance.

Quantitative morphology of a fringing reef tract from high-resolution laser bathymetry: Southern Molokai, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Logan, J.B.; Field, M.E.

2003-01-01

High-resolution Scanning Hydrographic Operational Airborne Lidar Survey (SHOALS) laser-determined bathymetric data were used to define the morphology of spur-and-groove structures on the fringing reef off the south coast of Molokai, Hawaii. These data provide a basis for mapping and analyzing morphology of the reef with a level of precision and spatial coverage never before attained. An extensive fringing coral reef stretches along the central two-thirds of Molokai's south shore (???40 km); along the east and west ends there is only a thin veneer of living coral with no developed reef complex. In total, ???4800 measurements of spur-and-groove height and the distance between adjacent spur crests (wavelength) were obtained along four isobaths. Between the 5m and 15m isobaths, the mean spur height increased from 0.7 m to 1.6 m, whereas the mean wavelength increased from 71 m to 104 m. Reef flat width was found to exponentially decrease with increasing wave energy. Overall, mean spur-and-groove height and wavelength were shown to be inversely proportional to wave energy. In high-energy environments, spur-and-groove morphology remains relatively constant across all water depths. In low-energy environments, however, spur-and-groove structures display much greater variation; they are relatively small and narrow in shallow depths and develop into much larger and broader features in deeper water. Therefore, it appears that waves exert a primary control on both the small and large-scale morphology of the reef off south Molokai.

Last interglacial sea levels and regional tectonics from fossil coral reefs at the Gulf of Aqaba

NASA Astrophysics Data System (ADS)

Bar, N.; Agnon, A.; Yehudai, M.; Lazar, B.; Shaked, Y.; Stein, M.

2017-12-01

Elevated fossil reef terraces along the northeast coast of the Gulf of Aqaba (GOA) illuminate the history of tectonic uplift and sea-level changes during the last interglacial period. The terraces comprise fringing reefs, some with clear reef structure that includes a reef flat and a shallow back lagoon accurately marking sea-levels. U-Th ages of precipitation of aragonitic corals and recrystallization of aragonite to calcite corals from three terraces are used to constrain the local sea-level pattern. Terrace R3 was probably formed during an earlier stage of MIS5e at 130-132 ka and recrystallized to calcite at 124±8 ka. Terrace R2, comprising a wide and developed reef flat, formed during a stable sea level of MIS5e at 129-121 ka and recrystallized to calcite at 104±6 ka. Terrace R1 formed during a short still-stand at 117 ka. All terraces formed when sea level was a few meters above the modern GOA level. The recrystallization age of Terrace R2 implies that at around 104±6 ka (MIS5c) sea level was close to its MIS5e elevation. The tectonic setting is superimposed by local faulting that caused small vertical displacements within the terraces. The elevation and ages of the reef flats indicate a slow average uplift, 0.12±0.05 m/kyr, similar to rates inferred for other reef terraces along GOA and the Red Sea. This implies an overall long-term slow tectonic uplift of the Arabian lithosphere during the late Quaternary.

Last interglacial (MIS5e) sea-levels and uplift along the north-east Gulf of Aqaba

NASA Astrophysics Data System (ADS)

BAR (KOHN), N.; Stein, M.; Agnon, A.; Yehudai, M.; Lazar, B.; Shaked, Y.

2014-12-01

An uplifted flight of coral reef terraces, extending along the north-east margin of the Gulf of Aqaba (GOA), provides evidence for uplift rates and sea level high stands. GOA fills a narrow and deep tectonic depression lying along the southern sector of the Dead Sea Transform where it meets the Red Sea. This special configuration of the GOA and its latitude turn it into a dependable paleo-sea level monitor, sensitive only to global eustatic changes and local tectonic movements. A sequence of five uplifted coral reef terraces were mapped and characterized on basis of morphology and reef-facies, and their elevation above the present sea level was determined. The fossil reefs studied comprise fringing reefs, some with clear reef-structure that includes a reef flat and a shallow back lagoon. Most outcrops in the study area represent a transgressive sequence in which, during its highest stand, formed fringing reef terraces. We use U-Th ages of fossil corals samples found in growth position at various terraces. Corals from three uplifted reef terraces, R1, R2, and R3 were dated to the last interglacial period particularly to marine isotope stage (MIS) 5e. These ages were achieved from mainly calcitic corals (recrystallized in a freshwater phreatic environment). A few ages were derived from aragonite corals. The three terraces represent three sub-stages within MIS5e: R3 formed during a short standstill at ~130 ka BP; R2 formed during a long and steady standstill between ~128 to ~121 ka BP; and R1 represents a short standstill at ~117 ka BP. Assuming that terrace reef flats represent past sea level high stands, we calculated the coast average uplift rate and constrained the original terraces elevations. The reconstructed eustatic sea level variation during MIS 5e at GOA resembles observations from reef terraces in other locations. Combined, all indicate a significant sea-level rise from the MIS 6 low stand at ~134-130 ka and followed by a long and stable sea level high stand between ~128 to ~121 ka, representing a major reef building period. The long and stable sea level was followed by additional sea-level rise at ~118-116 ka that transgressed over the "stable reefs".

Chaotic deposition by a giant wave, Molokai, Hawaii

USGS Publications Warehouse

Moore, J.G.; Bryan, W.B.; Ludwig, K. R.

1994-01-01

A coral-basalt breccia-conglomerate is exposed >60m above present sea level and nearly 2km inland from the present shoreline on the southwest side of East Molokai Volcano. This deposits was apparently laid down by a giant wave that broke over an outer reef, similar to the present fringing reef, and advanced as a turbulent bore over the back-reef flat, picking up a slurry of carbonate-rich debris and depositing it on the slopes inland as the wave advanced. U-series dating of coral fragments indicates that the age of this deposit is 240-200 ka. This giant wave was most likley caused by one of the many large submarine landslides that have been identified on the lower slopes of the major Hawaiian Islands. -from Authors

Simulating reef response to sea-level rise at Lizard Island: A geospatial approach

NASA Astrophysics Data System (ADS)

Hamylton, S. M.; Leon, J. X.; Saunders, M. I.; Woodroffe, C. D.

2014-10-01

Sea-level rise will result in changes in water depth over coral reefs, which will influence reef platform growth as a result of carbonate production and accretion. This study simulates the pattern of reef response on the reefs around Lizard Island in the northern Great Barrier Reef. Two sea-level rise scenarios are considered to capture the range of likely projections: 0.5 m and 1.2 m above 1990 levels by 2100. Reef topography has been established through extensive bathymetric profiling, together with available data, including LiDAR, single beam bathymetry, multibeam swath bathymetry, LADS and digitised chart data. The reef benthic cover around Lizard Island has been classified using a high resolution WorldView-2 satellite image, which is calibrated and validated against a ground referencing dataset of 364 underwater video records of the reef benthic character. Accretion rates are parameterised using published hydrochemical measurements taken in-situ and rules are applied using Boolean logic to incorporate geomorphological transitions associated with different depth ranges, such as recolonisation of the reef flat when it becomes inundated as sea level rises. Simulations indicate a variable platform response to the different sea-level rise scenarios. For the 0.5 m rise, the shallower reef flats are gradually colonised by corals, enabling this active geomorphological zone to keep up with the lower rate of rise while the other sand dominated areas get progressively deeper. In the 1.2 m scenario, a similar pattern is evident for the first 30 years of rise, beyond which the whole reef platform begins to slowly drown. To provide insight on reef response to sea-level rise in other areas, simulation results of four different reef settings are discussed and compared at the southeast reef flat (barrier reef), Coconut Beach (fringing reef), Watson's Bay (leeward bay with coral patches) and Mangrove Beach (sheltered lagoonal embayment). The reef sites appear to accrete upwards at a rate commensurate with the rate of rise, thereby maintaining their original profile and position relative to the sea surface and the leeward and lagoonal sites with a low accretion rate maintain a similar profile but slowly gain depth relative to sea-level. The result of this variable response is that elevated features of the reef platform, such as reef patches and crests tend to become more pronounced.

Evidence of chronic anthropogenic nutrient within coastal lagoon reefs adjacent to urban and tourism centers, Kenya: A stable isotope approach.

PubMed

Mwaura, Jelvas; Umezawa, Yu; Nakamura, Takashi; Kamau, Joseph

2017-06-30

The source of anthropogenic nutrient and its spatial extent in three fringing reefs with differing human population gradients in Kenya were investigated using stable isotope approaches. Nutrient concentrations and nitrate-δ 15 N in seepage water indicated that population density and tourism contributed greatly to the extent of nutrient loading to adjacent reefs. Although water-column nutrient analyses did not show any significant difference among the reefs, higher δ 15 N and N contents in macrophytes showed terrestrial nutrients affected primary producers in onshore areas in Nyali and Bamburi reefs, but were mitigated by offshore water intrusion especially at Nyali. On the offshore reef flat, where the same species of macroalgae were not available, complementary use of δ 15 N in sedimentary organic matter suggested inputs of nutrients originated from the urban city of Mombasa. If population increases in the future, nutrient conditions in the shallower reef, Vipingo, may be dramatically degraded due to lower water exchange ratio. Copyright © 2017 Elsevier Ltd. All rights reserved.

Sources and dispersal of land-based runoff from small Hawaiian drainages to a coral reef: Insights from geochemical signatures

NASA Astrophysics Data System (ADS)

Takesue, Renee K.; Storlazzi, Curt D.

2017-03-01

Land-based sediment and contaminant runoff is a major threat to coral reefs, and runoff reduction efforts would benefit from knowledge of specific runoff sources. Geochemical signatures of small drainage basins were determined in the fine fraction of soil and sediment, then used in the nearshore region of a coral reef-fringed urban embayment on southeast Oahu, Hawaii, to describe sources and dispersal of land-based runoff. The sedimentary rare earth element ratio (La/Yb)N showed a clear distinction between the two main rock types in the overall contributing area, tholeiitic and alkalic olivine basalt. Based on this geochemical signature it was apparent that the majority of terrigenous sediment on the reef flat originated from geologically old tholeiitic drainages. Sediment from one of five tholeiitic drainages had a distinct geochemical signature, and sediment with this signature was dispersed on the reef flat 2 km west and 150 m offshore of the contributing basin. Sediment and the anthropogenic metals Cd, Pb, and Zn were entrained in runoff from the most heavily urbanized region of the watershed. Although anthropogenic Cd and Zn had localized distributions close to shore, anthropogenic Pb was found associated with fine sediment on the westernmost part of the reef flat and 400 m offshore, illustrating how trade-wind-driven sediment transport can increase the scale of runoff impacts to nearshore communities. Our findings show that sediment geochemical signatures can provide insights about the source and dispersal of land-based runoff in shallow coastal environments. The application of such knowledge to watershed management and habitat remediation efforts can aid in the protection and restoration of runoff-impacted coastal ecosystems worldwide.

Sources and dispersal of land-based runoff from small Hawaiian drainages to a coral reef: Insights from geochemical signatures

USGS Publications Warehouse

Takesue, Renee K.; Storlazzi, Curt

2017-01-01

Land-based sediment and contaminant runoff is a major threat to coral reefs, and runoff reduction efforts would benefit from knowledge of specific runoff sources. Geochemical signatures of small drainage basins were determined in the fine fraction of soil and sediment, then used in the nearshore region of a coral reef-fringed urban embayment on southeast Oahu, Hawaii, to describe sources and dispersal of land-based runoff. The sedimentary rare earth element ratio (La/Yb)N showed a clear distinction between the two main rock types in the overall contributing area, tholeiitic and alkalic olivine basalt. Based on this geochemical signature it was apparent that the majority of terrigenous sediment on the reef flat originated from geologically old tholeiitic drainages. Sediment from one of five tholeiitic drainages had a distinct geochemical signature, and sediment with this signature was dispersed on the reef flat 2 km west and 150 m offshore of the contributing basin. Sediment and the anthropogenic metals Cd, Pb, and Zn were entrained in runoff from the most heavily urbanized region of the watershed. Although anthropogenic Cd and Zn had localized distributions close to shore, anthropogenic Pb was found associated with fine sediment on the westernmost part of the reef flat and 400 m offshore, illustrating how trade-wind-driven sediment transport can increase the scale of runoff impacts to nearshore communities. Our findings show that sediment geochemical signatures can provide insights about the source and dispersal of land-based runoff in shallow coastal environments. The application of such knowledge to watershed management and habitat remediation efforts can aid in the protection and restoration of runoff-impacted coastal ecosystems worldwide.

Budget of coral-derived organic carbon in a fringing coral reef of the Gulf of Aqaba, Red Sea

NASA Astrophysics Data System (ADS)

Naumann, Malik S.; Richter, Claudio; Mott, Claudius; el-Zibdah, Mohammad; Manasrah, Riyad; Wild, Christian

2012-12-01

The continuous release of organic C-rich material by reef-building corals can contribute substantially to biogeochemical processes and concomitant rapid nutrient recycling in coral reef ecosystems. However, our current understanding of these processes is limited to platform reefs exhibiting a high degree of ecosystem closure compared to the globally most common fringing reef type. This study carried out in the northern Gulf of Aqaba (Red Sea) presents the first quantitative budget for coral-derived organic carbon (COC) in a fringing reef and highlights the importance of local hydrodynamics. Diel reef-wide COC release amounted to 1.1 ± 0.2 kmol total organic carbon (TOC) representing 1-3% of gross benthic primary production. Most COC (73%) was released as particulate organic C (POC), the bulk of which (34-63%) rapidly settled as mucus string aggregates accounting for approximately 28% of total POC sedimentation. Sedimentation of mucus strings, but also dilution of suspended and dissolved COC in reef waters retained 82% of diel COC release in the fringing reef, providing a potentially important organic source for a COC-based food web. Pelagic COC degradation represented 0.1-1.6% of pelagic microbial respiration recycling 32% of diel retained COC. Benthic COC degradation contributed substantially (29-47%) to reef-wide microbial respiration in reef sands, including 20-38% by mucus string POC, and consumed approximately 52% of all retained COC. These findings point out the importance of COC as a C carrier for different reef types. COC may further represent a source of organic carbon for faunal communities colonising reef framework cavities complementing the efficient retention and recycling of COC within fringing reef environments.

New data from fringing-reef cores for the mid-Holocene higher sea level in Hainan Island, northern South China Sea

NASA Astrophysics Data System (ADS)

Yao, Yantao; Zhan, Wenhuan; Sun, Jie

2017-04-01

Most previous research on sea level indicators (including beachrock, abrasion platforms, notches and coral reefs) from coast of northern South China Sea suggested a higher sea level in the mid-Holocene. Microatolls, considered to be one of the most reliable indicators, led to an estimation of 2 to 3 m or even more higher sea levels in the mid-Holocene at southwest Leizhou Peninsula. Volcanic activities, however, occurred at several stages during the Quaternary at southern Leizhou Peninsula and northern Hainan Island, indicating a tectonically unstable local crust. Comprehensive comparison of microatolls between the volcanic and the non-volcanic coasts implied obvious uplift of the volcanic coast, where elevation of microatolls was higher than those on the non-volcanic coast. In addition, microatolls from the non-volcanic coast universally demonstrated a mid-Holocene higher sea level of less than 1 m. Similar studies to date at some tectonically stable locations, distant from the major glaciation centers (the far-field), provided evidence that the mid-Holocene sea level was not as high as that estimated before. On the longest and also the widest fringing reef of Hainan Island, 10 cores were drilled in a transect approximately perpendicular to coastline. Upper and lower unconformities for the layer of Holocene marine sediments witnessed the Holocene transgression and regression, respectively. U-series and AMS14C ages of in-situ surface corals and deposits from the unconformities, compiled with sedimentary characteristics, announced a highest sea level of 1.18 m in 5.30 cal ka BP. The rapid sea level rise mainly occurred in 6.25 5.75 cal ka BP at a rate up to 11.4 mm/a. From 5.30 cal ka BP to 4.50 cal ka BP, it can be regarded as a relative sea level stand, for most surface fossil microatolls on reef flat lived in this period. Since then there might be a sudden and fast sea level fall in 4.50 4.14 cal ka BP, resulting in fast exposure of the initial reef flat and then fast covering of sand dunes or beachrocks. As a result, fossil microtalls on the initial reef flat were well preserved, which were very important to indicating the mid-Holocene higher sea level. Acknowledgement: This research was supported by the National Program on Key Basic Research Project of China (2013CB956104)、National Natural Science Foundation of China (41376063) and the Chinese-Polish collaborated project ERES.

Marshall Islands Fringing Reef and Atoll Lagoon Observations of the Tohoku Tsunami

NASA Astrophysics Data System (ADS)

Ford, Murray; Becker, Janet M.; Merrifield, Mark A.; Song, Y. Tony

2014-12-01

The magnitude 9.0 Tohoku earthquake on 11 March 2011 generated a tsunami which caused significant impacts throughout the Pacific Ocean. A description of the tsunami within the lagoons and on the surrounding fringing reefs of two mid-ocean atoll islands is presented using bottom pressure observations from the Majuro and Kwajalein atolls in the Marshall Islands, supplemented by tide gauge data in the lagoons and by numerical model simulations in the deep ocean. Although the initial wave arrival was not captured by the pressure sensors, subsequent oscillations on the reef face resemble the deep ocean tsunami signal simulated by two numerical models, suggesting that the tsunami amplitudes over the atoll outer reefs are similar to that in deep water. In contrast, tsunami oscillations in the lagoon are more energetic and long lasting than observed on the reefs or modelled in the deep ocean. The tsunami energy in the Majuro lagoon exhibits persistent peaks in the 30 and 60 min period bands that suggest the excitation of closed and open basin normal modes, while energy in the Kwajalein lagoon spans a broader range of frequencies with weaker, multiple peaks than observed at Majuro, which may be associated with the tsunami behavior within the more irregular geometry of the Kwajalein lagoon. The propagation of the tsunami across the reef flats is shown to be tidally dependent, with amplitudes increasing/decreasing shoreward at high/low tide. The impact of the tsunami on the Marshall Islands was reduced due to the coincidence of peak wave amplitudes with low tide; however, the observed wave amplitudes, particularly in the atoll lagoon, would have led to inundation at different tidal phases.

Standing crop and sediment production of reef-dwelling foraminifera on O'ahu, Hawai'i

USGS Publications Warehouse

Harney, J.N.; Hallock, P.; Fletcher, C. H.; Richmond, B.M.

1999-01-01

Most of O'ahu's nearshore and beach sands are highly calcareous and of biogenic origin. The pale-colored constituent grains are the eroded remains of carbonate shells and skeletons produced by marine organisms living atop the island's fringing reefs and in the shallow waters near shore. Previous studies have shown that the tests of symbiont-bearing benthic foraminifera compose a substantial portion (up to one-fourth) of these organically produced sands. We sampled a variety of reef flat and slope habitats to obtain standing-crop data and production estimates for several sand-producing genera of reef-dwelling foraminifera. We found that modern communities of these shelled protists occur in dense numbers islandwide, reaching densities up to 105 individuals per square meter of suitable substrate in the more productive habitats. Further research on the contribution of foraminifera to beach, nearshore, and offshore sands is planned for O'ahu and neighboring islands to describe their roles in the sediment budget more completely.

Observations and estimates of wave-driven water level extremes at the Marshall Islands

NASA Astrophysics Data System (ADS)

Merrifield, M. A.; Becker, J. M.; Ford, M.; Yao, Y.

2014-10-01

Wave-driven extreme water levels are examined for coastlines protected by fringing reefs using field observations obtained in the Republic of the Marshall Islands. The 2% exceedence water level near the shoreline due to waves is estimated empirically for the study sites from breaking wave height at the outer reef and by combining separate contributions from setup, sea and swell, and infragravity waves, which are estimated based on breaking wave height and water level over the reef flat. Although each component exhibits a tidal dependence, they sum to yield a 2% exceedence level that does not. A hindcast based on the breaking wave height parameterization is used to assess factors leading to flooding at Roi-Namur caused by an energetic swell event during December 2008. Extreme water levels similar to December 2008 are projected to increase significantly with rising sea level as more wave and tide events combine to exceed inundation threshold levels.

Subtropical Biotic Fringing Reefs as Ecological Laboratories.

ERIC Educational Resources Information Center

Hunt, Jeffrey W.

1980-01-01

Describes a 16-week course in marine biology involving a class-coordinated investigation of a subtropical biotic fringing reef of Hawaii. Describes in detail the development of preliminary hypotheses regarding general cause-effect relationships on the reef, and the exploration of specific areas, such as chemical or physical factors. (CS)

The role of coral reef rugosity in dissipating wave energy and coastal protection

NASA Astrophysics Data System (ADS)

Harris, Daniel; Rovere, Alessio; Parravicini, Valeriano; Casella, Elisa

2016-04-01

Coral reefs are the most effective natural barrier in dissipating wave energy through breaking and bed friction. The attenuation of wave energy by coral reef flats is essential in the protection and stability of coral reef aligned coasts and reef islands. However, the effectiveness of wave energy dissipation by coral reefs may be diminished under future climate change scenarios with a potential reduction of coral reef rugosity due to increased stress environmental stress on corals. The physical roughness or rugosity of coral reefs is directly related to ecological diversity, reef health, and hydrodynamic roughness. However, the relationship between physical roughness and hydrodynamic roughness is not well understood despite the crucial role of bed friction in dissipating wave energy in coral reef aligned coasts. We examine the relationship between wave energy dissipation across a fringing reef in relation to the cross-reef ecological zonation and the benthic hydrodynamic roughness. Waves were measured by pressure transducers in a cross-reef transect on the reefs flats and post processed on a wave by wave basis to determine wave statistics such as significant wave height and wave period. Results from direct wave measurement were then used to calibrate a 1D wave dissipation model that incorporates dissipation functions due to bed friction and wave breaking. This model was used to assess the bed roughness required to produce the observed wave height dissipation during propagation from deep water and across the coral reef flats. Changes in wave dissipation was also examined under future scenarios of sea level rise and reduced bed roughness. Three dimensional models of the benthic reef structure were produced through structure-from-motion photogrammetry surveys. Reef rugosity was then determined from these surveys and related to the roughness results from the calibrated model. The results indicate that applying varying roughness coefficients as the benthic ecological assemblage changes produces the most accurate assessment of wave energy dissipation across the reef flat. However, the modelled results of bed roughness (e.g. 0.01 for the fore-reef slope) were different to the directly measured rugosity values (0.05 for the fore-reef slope) from three dimension structure-from-motion surveys. In spite of this, the modelled and directly measured values of roughness are similar considering the difficulties outlined in previous research when relating the coral reef structural complexity to a single value of hydrodynamic roughness. Bed roughness was shown to be a secondary factor behind wave breaking in dissipating wave energy. However, without bed friction waves could be an order of magnitude higher in the back-reef environment. Bed friction is also increasingly important in wave dissipation at higher sea levels as wave energy dissipation due to wave breaking is reduced at greater depths. This shows that maintaining a structurally diverse and healthy reef is crucial under future sea level rise scenarios in order to maintain the protection of coastal environments. These results also indicate that significant geomorphic change in coastal environments will occur due to reduced wave dissipation at higher sea levels unless reefs are capable of keeping up with forecasted sea level rise.

Assessing shoreline exposure and oyster habitat suitability maximizes potential success for sustainable shoreline protection using restored oyster reefs

USGS Publications Warehouse

LaPeyre, Megan K.; Serra, Kayla; Joyner, T. Andrew; Humphries, Austin T.

2015-01-01

Oyster reefs provide valuable ecosystem services that contribute to coastal resilience. Unfortunately, many reefs have been degraded or removed completely, and there are increased efforts to restore oysters in many coastal areas. In particular, much attention has recently been given to the restoration of shellfish reefs along eroding shorelines to reduce erosion. Such fringing reef approaches, however, often lack empirical data to identify locations where reefs are most effective in reducing marsh erosion, or fully take into account habitat suitability. Using monitoring data from 5 separate fringing reef projects across coastal Louisiana, we quantify shoreline exposure (fetch + wind direction + wind speed) and reef impacts on shoreline retreat. Our results indicate that fringing oyster reefs have a higher impact on shoreline retreat at higher exposure shorelines. At higher exposures, fringing reefs reduced marsh edge erosion an average of 1.0 m y−1. Using these data, we identify ranges of shoreline exposure values where oyster reefs are most effective at reducing marsh edge erosion and apply this knowledge to a case study within one Louisiana estuary. In Breton Sound estuary, we calculate shoreline exposure at 500 random points and then overlay a habitat suitability index for oysters. This method and the resulting visualization show areas most likely to support sustainable oyster populations as well as significantly reduce shoreline erosion. Our results demonstrate how site selection criteria, which include shoreline exposure and habitat suitability, are critical to ensuring greater positive impacts and longevity of oyster reef restoration projects.

Spatiotemporal Variability of Dimethylsulphoniopropionate on a Fringing Coral Reef: The Role of Reefal Carbonate Chemistry and Environmental Variability

PubMed Central

Burdett, Heidi L.; Donohue, Penelope J. C.; Hatton, Angela D.; Alwany, Magdy A.; Kamenos, Nicholas A.

2013-01-01

Oceanic pH is projected to decrease by up to 0.5 units by 2100 (a process known as ocean acidification, OA), reducing the calcium carbonate saturation state of the oceans. The coastal ocean is expected to experience periods of even lower carbonate saturation state because of the inherent natural variability of coastal habitats. Thus, in order to accurately project the impact of OA on the coastal ocean, we must first understand its natural variability. The production of dimethylsulphoniopropionate (DMSP) by marine algae and the release of DMSP’s breakdown product dimethylsulphide (DMS) are often related to environmental stress. This study investigated the spatiotemporal response of tropical macroalgae (Padina sp., Amphiroa sp. and Turbinaria sp.) and the overlying water column to natural changes in reefal carbonate chemistry. We compared macroalgal intracellular DMSP and water column DMSP+DMS concentrations between the environmentally stable reef crest and environmentally variable reef flat of the fringing Suleman Reef, Egypt, over 45-hour sampling periods. Similar diel patterns were observed throughout: maximum intracellular DMSP and water column DMS/P concentrations were observed at night, coinciding with the time of lowest carbonate saturation state. Spatially, water column DMS/P concentrations were highest over areas dominated by seagrass and macroalgae (dissolved DMS/P) and phytoplankton (particulate DMS/P) rather than corals. This research suggests that macroalgae may use DMSP to maintain metabolic function during periods of low carbonate saturation state. In the reef system, seagrass and macroalgae may be more important benthic producers of dissolved DMS/P than corals. An increase in DMS/P concentrations during periods of low carbonate saturation state may become ecologically important in the future under an OA regime, impacting larval settlement and increasing atmospheric emissions of DMS. PMID:23724073

iss009e23808

NASA Image and Video Library

2004-09-20

ISS009-E-23808 (20 September 2004) --- A fringing coral reef in the Red Sea is featured in this image photographed by an Expedition 9 crewmember on the International Space Station (ISS). The Sudanese coast of the Red Sea is a well known destination for divers due to clear water and abundance of coral reefs (or “shia’ab” in Arabic). According to NASA scientists studying the ISS imagery, reefs are formed primarily from precipitation of calcium carbonate by corals; massive reef structures are built over thousands of years of succeeding generations of coral. In the Red Sea, fringing reefs form on shallow shelves of less than 50 meters depth along the coastline. This photograph illustrates the intricate morphology of the reef system located along the coast between Port Sudan to the northwest and the Tokar River delta to the southeast. Close to shore, fringing reefs border the coastline. Farther offshore grows a larger, more complicated barrier reef structure. Different parts of the reef structure show up as variable shades of light blue. Deeper water channels (darker blue) define the boundaries for individual reefs within the greater barrier reef system. Such a complex pattern of reefs may translate into greater ecosystem diversity through a wide variety of local reef environments.

Effects of fringing reefs on tsunami inundation: American Samoa

USGS Publications Warehouse

Gelfenbaum, G.; Apotsos, A.; Stevens, A.W.; Jaffe, B.

2011-01-01

A numerical model of tsunami inundation, Delft3D, which has been validated for the 29 September 2009 tsunami in Tutuila, American Samoa, is used to better understand the impact of fringing coral reefs and embayments on tsunami wave heights, inundation distances, and velocities. The inundation model is used to explore the general conditions under which fringing reefs act as coastal buffers against incoming tsunamis. Of particular interest is the response of tsunamis to reefs of varying widths, depths, and roughness, as well as the effects of channels incised in the reef and the focusing effect of embayments. Model simulations for conditions similar to Tutuila, yet simplified to be uniform in the alongshore, suggest that for narrow reefs, less than about 200 m wide, the shoaling owing to shallow water depths over the fringing reef dominates, inducing greater wave heights onshore under some conditions and farther inundation inland. As the reef width increases, wave dissipation through bottom friction begins to dominate and the reef causes the tsunami wave heights to decrease and the tsunami to inundate less far inland. A sensitivity analysis suggests that coral reef roughness is important in determining the manner in which a fringing reef affects tsunami inundation. Smooth reefs are more likely to increase the onshore velocity within the tsunami compared to rough reefs. A larger velocity will likely result in an increased impact of the tsunami on structures and buildings. Simulations developed to explore 2D coastal morphology show that incised channels similar to those found around Tutuila, as well as coastal embayments, also affect tsunami inundation, allowing larger waves to penetrate farther inland. The largest effect is found for channels located within embayments, and for embayments that narrow landward. These simulations suggest that embayments that narrow landward, such as Fagafue Bay on the north side of Tutuila, and that have an incised deep channel, can cause a significant increase in tsunami wave heights, inundation distances, and velocities. Wide embayments, similar in size to Massacre Bay, induce some tsunami amplification, but not as much as for the narrowing embayment.

Warm water and cool nests are best. How global warming might influence hatchling green turtle swimming performance.

PubMed

Booth, David T; Evans, Andrew

2011-01-01

For sea turtles nesting on beaches surrounded by coral reefs, the most important element of hatchling recruitment is escaping predation by fish as they swim across the fringing reef, and as a consequence hatchlings that minimize their exposure to fish predation by minimizing the time spent crossing the fringing reef have a greater chance of surviving the reef crossing. One way to decrease the time required to cross the fringing reef is to maximize swimming speed. We found that both water temperature and nest temperature influence swimming performance of hatchling green turtles, but in opposite directions. Warm water increases swimming ability, with hatchling turtles swimming in warm water having a faster stroke rate, while an increase in nest temperature decreases swimming ability with hatchlings from warm nests producing less thrust per stroke.

Destructive tsunami-like wave generated by surf beat over a coral reef during Typhoon Haiyan.

PubMed

Roeber, Volker; Bricker, Jeremy D

2015-08-06

Storm surges cause coastal inundation due to setup of the water surface resulting from atmospheric pressure, surface winds and breaking waves. Here we show that during Typhoon Haiyan, the setup generated by breaking waves near the fringing-reef-protected town of Hernani, the Philippines, oscillated with the incidence of large and small wave groups, and steepened into a tsunami-like wave that caused extensive damage and casualties. Though fringing reefs usually protect coastal communities from moderate storms, they can exacerbate flooding during strong events with energetic waves. Typical for reef-type bathymetries, a very short wave-breaking zone over the steep reef face facilitates the freeing of infragravity-period fluctuations (surf beat) with little energy loss. Since coastal flood planning relies on phase-averaged wave modelling, infragravity surges are not being accounted for. This highlights the necessity for a policy change and the adoption of phase-resolving wave models for hazard assessment in regions with fringing reefs.

Destructive tsunami-like wave generated by surf beat over a coral reef during Typhoon Haiyan

PubMed Central

Roeber, Volker; Bricker, Jeremy D.

2015-01-01

Storm surges cause coastal inundation due to setup of the water surface resulting from atmospheric pressure, surface winds and breaking waves. Here we show that during Typhoon Haiyan, the setup generated by breaking waves near the fringing-reef-protected town of Hernani, the Philippines, oscillated with the incidence of large and small wave groups, and steepened into a tsunami-like wave that caused extensive damage and casualties. Though fringing reefs usually protect coastal communities from moderate storms, they can exacerbate flooding during strong events with energetic waves. Typical for reef-type bathymetries, a very short wave-breaking zone over the steep reef face facilitates the freeing of infragravity-period fluctuations (surf beat) with little energy loss. Since coastal flood planning relies on phase-averaged wave modelling, infragravity surges are not being accounted for. This highlights the necessity for a policy change and the adoption of phase-resolving wave models for hazard assessment in regions with fringing reefs. PMID:26245839

Experimental and Numerical Studies on Wave Breaking Characteristics over a Fringing Reef under Monochromatic Wave Conditions

PubMed Central

2014-01-01

Fringing reefs play an important role in protecting the coastal area by inducing wave breaking and wave energy dissipation. However, modeling of wave transformation and energy dissipation on this topography is still difficult due to the unique structure. In the present study, two-dimensional laboratory experiments were conducted to investigate the cross-shore variations of wave transformation, setup, and breaking phenomena over an idealized fringing reef with the 1/40 reef slope and to verify the Boussinesq model under monochromatic wave conditions. One-layer and two-layer model configurations of the Boussinesq model were used to figure out the model capability. Both models predicted well (r 2 > 0.8) the cross-shore variation of the wave heights, crests, troughs, and setups when the nonlinearity is not too high (A 0/h 0 < 0.07 in this study). However, as the wave nonlinearity and steepness increase, the one-layer model showed problems in prediction and stability due to the error on the vertical profile of fluid velocity. The results in this study revealed that one-layer model is not suitable in the highly nonlinear wave condition over a fringing reef bathymetry. This data set can contribute to the numerical model verification. PMID:25276853

Experimental and numerical studies on wave breaking characteristics over a fringing reef under monochromatic wave conditions.

PubMed

Lee, Jong-In; Shin, Sungwon; Kim, Young-Taek

2014-01-01

Fringing reefs play an important role in protecting the coastal area by inducing wave breaking and wave energy dissipation. However, modeling of wave transformation and energy dissipation on this topography is still difficult due to the unique structure. In the present study, two-dimensional laboratory experiments were conducted to investigate the cross-shore variations of wave transformation, setup, and breaking phenomena over an idealized fringing reef with the 1/40 reef slope and to verify the Boussinesq model under monochromatic wave conditions. One-layer and two-layer model configurations of the Boussinesq model were used to figure out the model capability. Both models predicted well (r (2) > 0.8) the cross-shore variation of the wave heights, crests, troughs, and setups when the nonlinearity is not too high (A 0/h 0 < 0.07 in this study). However, as the wave nonlinearity and steepness increase, the one-layer model showed problems in prediction and stability due to the error on the vertical profile of fluid velocity. The results in this study revealed that one-layer model is not suitable in the highly nonlinear wave condition over a fringing reef bathymetry. This data set can contribute to the numerical model verification.

Retrograde accretion of a Caribbean fringing reef controlled by hurricanes and sea-level rise

NASA Astrophysics Data System (ADS)

Blanchon, Paul; Richards, Simon; Bernal, Juan Pablo; Cerdeira-Estrada, Sergio; Ibarra, M. Socrates; Corona-Martínez, Liliana; Martell-Dubois, Raúl

2017-10-01

Predicting the impact of sea-level (SL) rise on coral reefs requires reliable models of reef accretion. Most assume that accretion results from vertical growth of coralgal framework, but recent studies show that reefs exposed to hurricanes consist of layers of coral gravel rather than in-place corals. New models are therefore needed to account for hurricane impact on reef accretion over geological timescales. To investigate this geological impact, we report the configuration and development of a 4-km-long fringing reef at Punta Maroma along the northeast Yucatan Peninsula. Satellite-derived bathymetry shows the crest is set-back a uniform distance of 315 ±15 m from a mid-shelf slope break, and the reef-front decreases 50% in width and depth along its length. A 12-core drill transect constrained by multiple 230Th ages shows the reef is composed of an 2-m thick layer of coral clasts that has retrograded 100 m over its back-reef during the last 5.5 ka. These findings are consistent with a hurricane-control model of reef development where large waves trip and break over the mid-shelf slope break, triggering rapid energy dissipation and thus limiting how far upslope individual waves can fragment corals and redistribute clasts. As SL rises and water depth increases, energy dissipation during wave-breaking is reduced, extending the clast-transport limit, thus leading to reef retrogradation. This hurricane model may be applicable to a large sub-set of fringing reefs in the tropical Western-Atlantic necessitating a reappraisal of their accretion rates and response to future SL rise.

Architecture and morphology of coral reef sequences. Modeling and observations from uplifting islands of SE Sulawesi, Indonesia

NASA Astrophysics Data System (ADS)

Pastier, Anne-Morwenn; Husson, Laurent; Bezos, Antoine; Pedoja, Kevin; Elliot, Mary; Hafidz, Abdul; Imran, Muhammad; Lacroix, Pascal; Robert, Xavier

2016-04-01

During the Late Neogene, sea level oscillations have profoundly shaped the morphology of the coastlines of intertropical zones, wherein relative sea level simultaneously controlled reef expansion and erosion of earlier reef bodies. In uplifted domains like SE Sulawesi, the sequences of fossil reefs display a variety of fossil morphologies. Similarly, the morphologies of the modern reefs are highly variable, including cliff notches, narrow fringing reefs, wide flat terraces, and barriers reefs. In this region, where uplift rates vary rapidly laterally, the entire set of morphologies is displayed within short distances. We developed a numerical model that predicts the architecture of fossil reefs sequences and apply it to observations from SE Sulawesi, accounting -amongst other parameters- for reef growth, coastal erosion, and uplift rates. The observations that we use to calibrate our models are mostly the morphology of both the onshore (dGPS and high-resolution Pleiades DEM) and offshore (sonar) coast, as well as U-Th radiometrically dated coral samples. Our method allows unravelling the spatial and temporal evolution of large domains on map view. Our analysis indicates that the architecture and morphology of uplifting coastlines is almost systematically polyphased (as attested by samples of different ages within a unique terrace), which assigns a primordial role to erosion, comparable to reef growth. Our models also reproduce the variety of modern morphologies, which are chiefly dictated by the uplift rates of the pre-existing morphology of the substratum, itself responding to the joint effects of reef building and subsequent erosion. In turn, we find that fossil and modern morphologies can be returned to uplift rates rather precisely, as the parametric window of each specific morphology is often narrow.

A trophic model of fringing coral reefs in Nanwan Bay, southern Taiwan suggests overfishing.

PubMed

Liu, Pi-Jen; Shao, Kwang-Tsao; Jan, Rong-Quen; Fan, Tung-Yung; Wong, Saou-Lien; Hwang, Jiang-Shiou; Chen, Jen-Ping; Chen, Chung-Chi; Lin, Hsing-Juh

2009-09-01

Several coral reefs of Nanwan Bay, Taiwan have recently undergone shifts to macroalgal or sea anemone dominance. Thus, a mass-balance trophic model was constructed to analyze the structure and functioning of the food web. The fringing reef model was comprised of 18 compartments, with the highest trophic level of 3.45 for piscivorous fish. Comparative analyses with other reef models demonstrated that Nanwan Bay was similar to reefs with high fishery catches. While coral biomass was not lower, fish biomass was lower than those of reefs with high catches. Consequently, the sums of consumption and respiratory flows and total system throughput were also decreased. The Nanwan Bay model potentially suggests an overfished status in which the mean trophic level of the catch, matter cycling, and trophic transfer efficiency are extremely reduced.

Meteorologic, oceanographic, and geomorphic controls on circulation and residence time in a coral reef-lined embayment: Faga'alu Bay, American Samoa

NASA Astrophysics Data System (ADS)

Storlazzi, C. D.; Cheriton, O. M.; Messina, A. M.; Biggs, T. W.

2018-06-01

Water circulation over coral reefs can determine the degree to which reef organisms are exposed to the overlying waters, so understanding circulation is necessary to interpret spatial patterns in coral health. Because coral reefs often have high geomorphic complexity, circulation patterns and the duration of exposure, or "local residence time" of a water parcel, can vary substantially over small distances. Different meteorologic and oceanographic forcings can further alter residence time patterns over reefs. Here, spatially dense Lagrangian surface current drifters and Eulerian current meters were used to characterize circulation patterns and resulting residence times over different regions of the reefs in Faga'alu Bay, American Samoa, during three distinct forcing periods: calm, strong winds, and large waves. Residence times varied among different geomorphic zones of the reef and were reflected in the spatially varying health of the corals across the embayment. The relatively healthy, seaward fringing reef consistently had the shortest residence times, as it was continually flushed by wave breaking at the reef crest, whereas the degraded, sheltered, leeward fringing reef consistently had the longest residence times, suggesting this area is more exposed to land-based sources of pollution. Strong wind forcing resulted in the longest residence times by pinning the water in the bay, whereas large wave forcing flushed the bay and resulted in the shortest residence times. The effect of these different forcings on residence times was fairly consistent across all reef geomorphic zones, with the shift from wind to wave forcing shortening mean residence times by approximately 50%. Although ecologically significant to the coral organisms in the nearshore reef zones, these shortened residence times were still 2-3 times longer than those associated with the seaward fringing reef across all forcing conditions, demonstrating how the geomorphology of a reef environment sets a first-order control on reef health.

Feedbacks Between Wave Energy And Declining Coral Reef Structure: Implications For Coastal Morphodynamics

NASA Astrophysics Data System (ADS)

Grady, A. E.; Jenkins, C. J.; Moore, L. J.; Potts, D. C.; Burgess, P. M.; Storlazzi, C. D.; Elias, E.; Reidenbach, M. A.

2013-12-01

The incident wave energy dissipated by the structural complexity and bottom roughness of coral reef ecosystems, and the carbonate sediment produced by framework-building corals, provide natural shoreline protection and nourishment, respectively. Globally, coral reef ecosystems are in decline as a result of ocean warming and acidification, which is exacerbated by chronic regional stressors such as pollution and disease. As a consequence of declining reef health, many reef ecosystems are experiencing reduced coral cover and shifts to dominance by macroalgae, resulting in a loss of rugosity and thus hydrodynamic roughness. As coral reef architecture is compromised and carbonate skeletons are eroded, wave energy dissipation and sediment transport patterns--along with the carbonate sediment budget of the coastal environment--may be altered. Using a Delft3D numerical model of the south-central Molokai, Hawaii, fringing reef, we simulate the effects of changing reef states on wave energy and sediment transport. To determine the temporally-varying effects of biotic and abiotic stressors such as storms and bleaching on the reef structure and carbonate production, we couple Delft3D with CarboLOT, a model that simulates growth and competition of carbonate-producing organisms. CarboLOT is driven by the Lotka-Volterra population ecology equations and niche suitability principles, and accesses the CarboKB database for region-specific, carbonate-producing species information on growth rates, reproduction patterns, habitat suitability, as well as organism geometries. Simulations assess how changing reef states--which alter carbonate sediment production and reef morphology and thus hydrodynamic roughness--impact wave attenuation and sediment transport gradients along reef-fronted beaches. Initial results suggest that along fringing reefs having characteristics similar to the Molokai fringing reef, projected sea level rise will likely outpace coral reef accretion, and the increased residual wave energy transported to the coast may result in the alteration of alongshore sediment transport gradients and substantial changes to coastal morphology.

The ecology, behaviour and physiology of fishes on coral reef flats, and the potential impacts of climate change.

PubMed

Harborne, A R

2013-09-01

Reef flats, typically a low-relief carbonate and sand habitat in shallow water leeward of the reef crest, are one of the most extensive zones on Pacific coral reefs. This shallow zone often supports an abundant and diverse fish assemblage that is exposed to more significant variations in physical factors, such as water depth and movement, temperature and ultraviolet (UV) radiation levels, than most other reef fishes. This review examines the characteristics of reef flat fish assemblages, and then investigates what is known about how they respond to their biophysical environment. Because of the challenges of living in shallow, wave-exposed water, reef flats typically support a distinct fish assemblage compared to other reef habitats. This assemblage clearly changes across tidal cycles as some larger species migrate to deeper water at low tide and other species modify their behaviour, but quantitative data are generally lacking. At least some reef flat fish species are well-adapted to high temperatures, low oxygen concentrations and high levels of UV radiation. These behavioural and physiological adaptations suggest that there may be differences in the demographic processes between reef flat assemblages and those in deeper water. Indeed, there is some evidence that reef flats may act as nurseries for some species, but more research is required. Further studies are also required to predict the effects of climate change, which is likely to have multifaceted impacts on reef flats by increasing temperature, water motion and sediment load. Sea-level rise may also affect reef flat fish assemblages and food webs by increasing the amount of time that larger species are able to forage in this zone. The lack of data on reef flats is surprising given their size and relative ease of access, and a better understanding of their functional role within tropical marine seascapes is urgently required. © 2013 The Fisheries Society of the British Isles.

Distribution and biological implications of plastic pollution on the fringing reef of Mo’orea, French Polynesia

PubMed Central

2017-01-01

Coral reef ecosystems of the South Pacific are extremely vulnerable to plastic pollution from oceanic gyres and land-based sources. To describe the extent and impact of plastic pollution, the distribution of both macro- (>5 mm) and microplastic (plastic < 5 mm) of the fringing reef of an isolated South Pacific island, Mo’orea, French Polynesia was quantified. Macroplastic was found on every beach on the island that was surveyed. The distribution of this plastic was categorized by site type and by the presence of Turbinaria ornata, a common macroalgae on Mo’orea. Microplastics were discovered in the water column of the fringing reef of the island, at a concentration of 0.74 pieces m−2. Additionally, this study reports for the first time the ingestion of microplastic by the corallimorpha Discosoma nummiforme. Microplastics were made available to corallimorph polyps in a laboratory setting over the course of 108 h. Positively and negatively buoyant microplastics were ingested, and a microplastic particle that was not experimentally introduced was also discovered in the stomach cavity of one organism. This study indicates that plastic pollution has the potential to negatively impact coral reef ecosystems of the South Pacific, and warrants further study to explore the broader potential impacts of plastic pollution on coral reef ecosystems. PMID:28875079

Distribution and biological implications of plastic pollution on the fringing reef of Mo'orea, French Polynesia.

PubMed

Connors, Elizabeth J

2017-01-01

Coral reef ecosystems of the South Pacific are extremely vulnerable to plastic pollution from oceanic gyres and land-based sources. To describe the extent and impact of plastic pollution, the distribution of both macro- (>5 mm) and microplastic (plastic < 5 mm) of the fringing reef of an isolated South Pacific island, Mo'orea, French Polynesia was quantified. Macroplastic was found on every beach on the island that was surveyed. The distribution of this plastic was categorized by site type and by the presence of Turbinaria ornata, a common macroalgae on Mo'orea. Microplastics were discovered in the water column of the fringing reef of the island, at a concentration of 0.74 pieces m -2 . Additionally, this study reports for the first time the ingestion of microplastic by the corallimorpha Discosoma nummiforme. Microplastics were made available to corallimorph polyps in a laboratory setting over the course of 108 h. Positively and negatively buoyant microplastics were ingested, and a microplastic particle that was not experimentally introduced was also discovered in the stomach cavity of one organism. This study indicates that plastic pollution has the potential to negatively impact coral reef ecosystems of the South Pacific, and warrants further study to explore the broader potential impacts of plastic pollution on coral reef ecosystems.

Wave Dissipation on Low- to Super-Energy Coral Reefs

NASA Astrophysics Data System (ADS)

Harris, D. L.

2016-02-01

Coral reefs are valuable, complex and bio-diverse ecosystems and are also known to be one of the most effective barriers to swell events in coastal environments. Previous research has found coral reefs to be remarkably efficient in removing most of the wave energy during the initial breaking and transformation on the reef flats. The rate of dissipation is so rapid that coral reefs have been referred to as rougher than any known coastal barrier. The dissipation of wave energy across reef flats is crucial in maintaining the relatively low-energy conditions in the back reef and lagoonal environments providing vital protection to adjacent beach or coastal regions from cyclone and storm events. A shift in the regulation of wave energy by reef flats could have catastrophic consequences ecologically, socially, and economically. This study examined the dissipation of wave energy during two swell events in Tahiti and Moorea, French Polyesia. Field sites were chosen in varying degrees of exposure and geomorphology from low-energy protected sites (Tiahura, Moorea) to super-energy sites (Teahupo'o, Tahiti). Waves were measured during two moderate to large swell events in cross reef transects using short-term high-resolution pressure transducers. Wave conditions were found to be similar in all back reef locations despite the very different wave exposure at each reef site. However, wave conditions on the reef flats were different and mirrored the variation in wave exposure with depth over the reef flat the primary regulator of reef flat wave height. These results indicate that coral reef flats evolve morphodynamically with the wave climate, which creates coral reef geomorphologies capable of dissipating wave energy that results in similar back reef wave conditions regardless of the offshore wave climate.

Quaternary onset and evolution of Kimberley coral reefs (Northwest Australia) revealed by high-resolution seismic imaging

NASA Astrophysics Data System (ADS)

Bufarale, Giada; Collins, Lindsay B.; O'Leary, Michael J.; Stevens, Alexandra; Kordi, Moataz; Solihuddin, Tubagus

2016-07-01

The inner shelf Kimberley Bioregion of Northwest Australia is characterised by a macrotidal setting where prolific coral reefs growth as developed around a complex drowned landscape and is considered a biodiversity "hotspot". High-resolution shallow seismic studies were conducted across various reef settings in the Kimberley (Buccaneer Archipelago, north of Dampier Peninsula, latitude: between 16°40‧S and 16°00‧S) to evaluate stratigraphic evolution, interaction with different substrates, morphological patterns and distribution. Reef sites were chosen to assess most of the reef types present, particularly high intertidal planar reefs and fringing reefs. Reef internal acoustic reflectors were identified according to their shape, stratigraphic position and characteristics. Two main seismic horizons were identified marking the boundaries between Holocene reef (Marine Isotope Stage 1, MIS 1, last 12 ky), commonly 10-20 m thick, and MIS 5 (Last Interglacial, LIG, ~120 ky, up to 12 m thick) and Proterozoic rock foundation over which Quaternary reef growth occurred. Within the Holocene Reef unit, at least three minor internal reflectors, generally discontinuous, subparallel to the reef flat were recognised and interpreted as either growth hiatuses or a change of the coral framework or sediment matrix. The LIG reefs represent a new northernmost occurrence along the Western Australian coast. The research presented here achieved the first regional geophysical study of the Kimberley reefs. Subbottom profiles demonstrated that the surveyed reefs are characterised by a multi-stage reef buildup, indicating that coral growth occurred in the Kimberley during previous sea level highstands. The data show also that antecedent substrate and regional subsidence have contributed, too, in determining the amount of accommodation available for reef growth and controlling the morphology of the successive reef building stages. Moreover, the study showed that in spite of macrotidal conditions, high-turbidity and frequent high-energy cyclonic events, corals have exhibited prolific reef growth during the Holocene developing significant reef accretionary structures. As a result coral reefs have generating habitat complexity and species diversity in what is a biodiversity hotspot.

Nonhydrostatic and surfbeat model predictions of extreme wave run-up in fringing reef environments

USGS Publications Warehouse

Lashley, Christopher H.; Roelvink, Dano; van Dongeren, Ap R.; Buckley, Mark L.; Lowe, Ryan J.

2018-01-01

The accurate prediction of extreme wave run-up is important for effective coastal engineering design and coastal hazard management. While run-up processes on open sandy coasts have been reasonably well-studied, very few studies have focused on understanding and predicting wave run-up at coral reef-fronted coastlines. This paper applies the short-wave resolving, Nonhydrostatic (XB-NH) and short-wave averaged, Surfbeat (XB-SB) modes of the XBeach numerical model to validate run-up using data from two 1D (alongshore uniform) fringing-reef profiles without roughness elements, with two objectives: i) to provide insight into the physical processes governing run-up in such environments; and ii) to evaluate the performance of both modes in accurately predicting run-up over a wide range of conditions. XBeach was calibrated by optimizing the maximum wave steepness parameter (maxbrsteep) in XB-NH and the dissipation coefficient (alpha) in XB-SB) using the first dataset; and then applied to the second dataset for validation. XB-NH and XB-SB predictions of extreme wave run-up (Rmax and R2%) and its components, infragravity- and sea-swell band swash (SIG and SSS) and shoreline setup (<η>), were compared to observations. XB-NH more accurately simulated wave transformation but under-predicted shoreline setup due to its exclusion of parameterized wave-roller dynamics. XB-SB under-predicted sea-swell band swash but overestimated shoreline setup due to an over-prediction of wave heights on the reef flat. Run-up (swash) spectra were dominated by infragravity motions, allowing the short-wave (but not wave group) averaged model (XB-SB) to perform comparably well to its more complete, short-wave resolving (XB-NH) counterpart. Despite their respective limitations, both modes were able to accurately predict Rmax and R2%.

Hydrodynamic response of a fringing coral reef to a rise in mean sea level

NASA Astrophysics Data System (ADS)

Taebi, Soheila; Pattiaratchi, Charitha

2014-07-01

Ningaloo Reef, located along the northwest coast of Australia, is one of the longest fringing coral reefs in the world extending ~300 km. Similar to other fringing reefs, it consists of a barrier reef ~1-6 km offshore with occasional gaps, backed by a shallow lagoon. Wave breaking on the reef generates radiation stress gradients that produces wave setup across the reef and lagoon and mean currents across the reef. A section of Ningaloo Reef at Sandy Bay was chosen as the focus of an intense 6-week field experiment and numerical simulation using the wave model SWAN coupled to the three-dimensional circulation model ROMS. The physics of nearshore processes such as wave breaking, wave setup and mean flow across the reef was investigated in detail by examining the various momentum balances established in the system. The magnitude of the terms and the distance of their peaks from reef edge in the momentum balance were sensitive to the changes in mean sea level, e.g. the wave forces decreased as the mean water depth increased (and hence, wave breaking dissipation was reduced). This led to an increase in the wave power at the shoreline, a slight shift of the surf zone to the lee side of the reef and changes in the intensity of the circulation. The predicted hydrodynamic fields were input into a Lagrangian particle tracking model to estimate the transport time scale of the reef-lagoon system. Flushing time of the lagoon with the open ocean was computed using two definitions in renewal of semi-enclosed water basins and revealed the sensitivity of such a transport time scale to methods. An increase in the lagoon exchange rate at smaller mean sea-level rise and the decrease at higher mean sea-level rise was predicted through flushing time computed using both methods.

A preliminary evaluation of nearhore extreme sea level and wave models for fringing reef environments

NASA Astrophysics Data System (ADS)

Hoeke, R. K.; Reyns, J.; O'Grady, J.; Becker, J. M.; Merrifield, M. A.; Roelvink, J. A.

2016-02-01

Oceanic islands are widely perceived as vulnerable to sea level rise and are characterized by steep nearshore topography and fringing reefs. In such settings, near shore dynamics and (non-tidal) water level variability tends to be dominated by wind-wave processes. These processes are highly sensitive to reef morphology and roughness and to regional wave climate. Thus sea level extremes tend to be highly localized and their likelihood can be expected to change in the future (beyond simple extrapolation of sea level rise scenarios): e.g. sea level rise may increase the effective mean depth of reef crests and flats and ocean acidification and/or increased temperatures may lead to changes in reef structure. The problem is sufficiently complex that analytic or numerical approaches are necessary to estimate current hazards and explore potential future changes. In this study, we evaluate the capacity of several analytic/empirical approaches and phase-averaged and phase-resolved numerical models at sites in the insular tropical Pacific. We consider their ability to predict time-averaged wave setup and instantaneous water level exceedance probability (or dynamic wave run-up) as well as computational cost; where possible, we compare the model results with in situ observations from a number of previous studies. Preliminary results indicate analytic approaches are by far the most computationally efficient, but tend to perform poorly when alongshore straight and parallel morphology cannot be assumed. Phase-averaged models tend to perform well with respect to wave setup in such situations, but are unable to predict processes related to individual waves or wave groups, such as infragravity motions or wave run-up. Phase-resolved models tend to perform best, but come at high computational cost, an important consideration when exploring possible future scenarios. A new approach of combining an unstructured computational grid with a quasi-phase averaged approach (i.e. only phase resolving motions below a frequency cutoff) shows promise as a good compromise between computational efficiency and resolving processes such as wave runup and overtopping in more complex bathymetric situations.

Response of herbivore functional groups to sequential perturbations in Moorea, French Polynesia

NASA Astrophysics Data System (ADS)

Han, Xueying; Adam, Thomas C.; Schmitt, Russell J.; Brooks, Andrew J.; Holbrook, Sally J.

2016-09-01

The reefs surrounding the island of Moorea, French Polynesia, experienced two large pulse perturbations between 2008 and 2010, an outbreak of the crown-of-thorns seastar ( Acanthaster planci) followed by a cyclone, that resulted in the reduction in live coral cover on the fore reef from ~40 to <5 %. Live coral cover in back reef and fringing reef habitats initially remained relatively stable, but began a gradual decline around 2010. We assessed the changes in the functional composition of the herbivorous fish community following the pulse perturbations and during the time of gradual coral decline on the back reef and fringing reef. Forty-nine species of herbivorous fishes quantified in yearly surveys between 2006 and 2014 were assigned to six functional groups: browser, detritivore, excavator, farmer, grazer/detritivore, and scraper. Non-metric multidimensional scaling analyses revealed that despite unique functional assemblages initially existing among the fringing reef, back reef, and fore reef habitats, the herbivorous fish communities in all three habitats responded in a qualitatively similar fashion to coral decline by moving toward functional communities characterized by an increased representation of excavators and scrapers. Island-wide scraper biomass increased by ~sevenfold in the post-disturbance time period, while excavator biomass increased by nearly threefold. The biomass of detritivores and grazers/detritivores also increased over the same time period, but to a much lesser degree, while the biomass of browsers and farmers remained essentially unchanged. Macroalgae remained a relatively minor space holder (<10 % cover) in lagoon habitats and on the fore reef through 2014, enabling recruitment of juvenile coral and initiating coral recovery on the fore reef. Results suggest that a functional community with a substantial biomass of herbivores and the capacity for the biomass of scrapers and excavators to increase rapidly in response to landscape-scale declines in coral cover may enhance resilience by preventing the widespread establishment of macroalgae.

Linking Wave Forcing to Coral Cover and Structural Complexity Across Coral Reef Flats

NASA Astrophysics Data System (ADS)

Harris, D. L.; Rovere, A.; Parravicini, V.; Casella, E.

2015-12-01

The hydrodynamic regime is a significant component in the geomorphic and ecological development of coral reefs. The energy gradients and flow conditions generated by the breaking and transformation of waves across coral reef crests and flats drive changes in geomorphic structure, and coral growth form and distribution. One of the key aspects in regulating the wave energy propagating across reef flats is the rugosity or roughness of the benthic substrate. Rugosity and structural complexity of coral reefs is also a key indicator of species diversity, ecological functioning, and reef health. However, the links between reef rugosity, coral species distribution and abundance, and hydrodynamic forcing are poorly understood. In this study we examine this relationship by using high resolution measurement of waves in the surf zone and coral reef benthic structure.Pressure transducers (logging at 4 Hz) were deployed in cross reef transects at two sites (Tiahura and Ha'apiti reef systems) in Moorea, French Polynesia with wave characteristics determined on a wave by wave basis. A one dimensional hydrodynamic model (XBeach) was calibrated from this data to determine wave processes on the reef flats under average conditions. Transects of the reef benthic structure were conducted using photographic analysis and the three dimensional reef surface was constructed using structure from motion procedures. From this analysis reef rugosity, changes in coral genus and growth form, and across reef shifts in benthic community were determined. The results show clear changes in benthic assemblages along wave energy gradients with some indication of threshold values of wave induced bed shear stress above which live coral cover was reduced. Reef rugosity was shown to be significantly along the cross-reef transect which has important implications for accurate assessment of wave dissipation across coral reef flats. Links between reef rugosity and coral genus were also observed and may indicate that some coral species are crucial in maintaining the structural diversity of coral reefs.

Occurrence of brackish water phytoplankton species at a closed coral reef in Nansha Islands, South China Sea.

PubMed

Shen, Ping-Ping; Tan, Ye-Hui; Huang, Liang-Min; Zhang, Jian-Lin; Yin, Jian-Qiang

2010-10-01

The phytoplankton assemblage of Zhubi Reef, a closed coral reef in Nansha Islands (South China Sea, SCS) was studied in June 2007. A total of 92 species belonging to 53 genera and four phyla have been identified. The dominant taxa in the lagoon were the diatom Chaetoceros and cyanobacteria Nostoc and Microcystis, while in reef flats were cyanobacteria Trichodesmium erythraeum, dinoflagellates Gymnodinium and Prorocentrum. The species richness and diversity were consistently lower in the lagoon than in reef flats. Classification and nMDS ordination also revealed significant dissimilarity in phytoplankton community structure between the reef flat and lagoon, with statistical difference in species composition and abundance between them (ANOSIM, p=0.025). Nutrient concentrations also spatially varied, with ammonium-enrichment in the lagoon, while high Si-concentration existed in reef flat areas. Both nutrient levels and currents in SCS may play important roles in determining the composition and distribution of microalgae in Zhubi Reef and SCS. Copyright © 2010 Elsevier Ltd. All rights reserved.

Productivity and abundance of large sponge populations on Flinders Reef flats, Coral Sea

NASA Astrophysics Data System (ADS)

Wilkinson, Clive R.

1987-04-01

Large populations of flattened sponges with cyanobacterial symbionts were observed on the shallow reef-flats of the Flinders Reefs, Coral Sea. Estimates of these populations indicated as many as 60 individuals with a total wet biomass of 1.2 kg per m2 in some areas. Along a metre wide transect across 1.3 km of reef flat the population was estimated at 530 kg wet weight sponge (mean 411 g m-2). The four prominent species had instantaneous P/R ratios between 1.3 and 1.8 at optimum light such that photosynthetic productivity was calculated to provide between 61 and 80% of sponge energy requirements in summer and 48 to 64% in winter. While such sponge beds are a prominent feature of these reefs, they appear to contribute less than 10% of gross reef-flat productivity.

Watershed processes from ridge to reef: consequences of feral ungulates for coral reef and effects of watershed management

Treesearch

Gordon Tribble; Jonathan Stock; Jim Jacobi

2016-01-01

Molokai’s south shore has some of Hawaii’s most extensive and best-developed coral reefs. Historic terrigenous sedimentation appears to have impacted coral growth along several miles of fringing reef. The land upslope of the reef consists of small watersheds with streams that flow intermittently to the ocean. A USGS gage at the outlet of one of the most impacted...

Distribution and sediment production of large benthic foraminifers on reef flats of the Majuro Atoll, Marshall Islands

NASA Astrophysics Data System (ADS)

Fujita, K.; Osawa, Y.; Kayanne, H.; Ide, Y.; Yamano, H.

2009-03-01

The distributions and population densities of large benthic foraminifers (LBFs) were investigated on reef flats of the Majuro Atoll, Marshall Islands. Annual sediment production by foraminifers was estimated based on population density data. Predominant LBFs were Calcarina and Amphistegina, and the population densities of these foraminifers varied with location and substratum type on reef flats. Both foraminifers primarily attached to macrophytes, particularly turf-forming algae, and were most abundant on an ocean reef flat (ORF) and in an inter-island channel near windward, sparsely populated islands. Calcarina density was higher on windward compared to leeward sides of ORFs, whereas Amphistegina density was similar on both sides of ORFs. These foraminifers were more common on the ocean side relative to the lagoon side of reef flats around a windward reef island, and both were rare or absent in nearshore zones around reef islands and on an ORF near windward, densely populated islands. Foraminiferal production rates varied with the degree to which habitats were subject to water motion and human influences. Highly productive sites (>103 g CaCO3 m-2 year-1) included an ORF and an inter-island channel near windward, sparsely populated islands, and a seaward area of a reef flat with no reef islands. Low-productivity sites (<10 g CaCO3 m-2 year-1) included generally nearshore zones of lagoonal reef flats, leeward ORFs, and a windward ORF near densely populated islands. These results suggest that the distribution and production of LBFs were largely influenced by a combination of natural environmental factors, including water motion, water depth, elevation relative to the lowest tidal level at spring tide, and the distribution of suitable substratum. The presence of reef islands may limit the distribution and production of foraminifers by altering water circulation in nearshore environments. Furthermore, increased anthropogenic factors (population and activities) may adversely affect foraminiferal distribution and production.

Hydrodynamics of a bathymetrically complex fringing coral reef embayment: Wave climate, in situ observations, and wave prediction

USGS Publications Warehouse

Hoeke, R.; Storlazzi, C.; Ridd, P.

2011-01-01

This paper examines the relationship between offshore wave climate and nearshore waves and currents at Hanalei Bay, Hawaii, an exposed bay fringed with coral reefs. Analysis of both offshore in situ data and numerical hindcasts identify the predominance of two wave conditions: a mode associated with local trade winds and an episodic pattern associated with distant source long-period swells. Analysis of 10 months of in situ data within the bay show that current velocities are up to an order of magnitude greater during long-period swell episodes than during trade wind conditions; overall circulation patterns are also fundamentally different. The current velocities are highly correlated with incident wave heights during the swell episodes, while they are not during the modal trade wind conditions. A phase-averaged wave model was implemented with the dual purpose of evaluating application to bathymetrically complex fringing reefs and to examine the propagation of waves into the nearshore in an effort to better explain the large difference in observed circulation during the two offshore wave conditions. The prediction quality of this model was poorer for the episodic condition than for the lower-energy mode, however, it illustrated how longer-period swells are preferentially refracted into the bay and make available far more nearshore wave energy to drive currents compared to waves during modal conditions. The highly episodic circulation, the nature of which is dependent on complex refraction patterns of episodic, long-period swell has implications for flushing and sediment dynamics for incised fringing reef-lined bays that characterize many high islands at low latitudes around the world.

Impact Of Coral Structures On Wave Directional Spreading Across A Shallow Reef Flat - Lizard Island, Northern Great Barrier Reef

NASA Astrophysics Data System (ADS)

Leon, J. X.; Baldock, T.; Callaghan, D. P.; Hoegh-guldberg, O.; Mumby, P.; Phinn, S. R.; Roelfsema, C. M.; Saunders, M. I.

2013-12-01

Coral reef hydrodynamics operate at several and overlapping spatial-temporal scales. Waves have the most important forcing function on shallow (< 5 m) reefs as they drive most ecological and biogeochemical processes by exerting direct physical stress, directly mixing water (temperature and nutrients) and transporting sediments, nutrients and plankton. Reef flats are very effective at dissipating wave energy and providing an important ecosystem service by protecting highly valued shorelines. The effectiveness of reef flats to dissipate wave energy is related to the extreme hydraulic roughness of the benthos and substrate composition. Hydraulic roughness is usually obtained empirically from frictional-dissipation calculations, as detailed field measurements of bottom roughness (e.g. chain-method or profile gauges) is a very labour and time-consuming task. In this study we measured the impact of coral structures on wave directional spreading. Field data was collected during October 2012 across a reef flat on Lizard Island, northern Great Barrier Reef. Wave surface levels were measured using an array of self-logging pressure sensors. A rapid in situ close-range photogrammetric method was used to create a high-resolution (0.5 cm) image mosaic and digital elevation model. Individual coral heads were extracted from these datasets using geo-morphometric and object-based image analysis techniques. Wave propagation was modelled using a modified version of the SWAN model which includes the measured coral structures in 2m by 1m cells across the reef. The approach followed a cylinder drag approach, neglecting skin friction and inertial components. Testing against field data included bed skin friction. Our results show, for the first time, how the variability of the reef benthos structures affects wave dissipation across a shallow reef flat. This has important implications globally for coral reefs, due to the large extent of their area occupied by reef flats, particularly, as global-scale degradation in coral reef health is causing a lowering of reef carbonate production that might lead to a decrease in reef structure and roughness.

Regional hard coral distribution within geomorphic and reef flat ecological zones determined by satellite imagery of the Xisha Islands, South China Sea

NASA Astrophysics Data System (ADS)

Zuo, Xiuling; Su, Fenzhen; Zhao, Huanting; Zhang, Junjue; Wang, Qi; Wu, Di

2017-05-01

Coral reefs in the Xisha Islands (also known as the Paracel Islands in English), South China Sea, have experienced dramatic declines in coral cover. However, the current regional scale hard coral distribution of geomorphic and ecological zones, essential for reefs management in the context of global warming and ocean acidification, is not well documented. We analyzed data from field surveys, Landsat-8 and GF-1 images to map the distribution of hard coral within geomorphic zones and reef flat ecological zones. In situ surveys conducted in June 2014 on nine reefs provided a complete picture of reef status with regard to live coral diversity, evenness of coral cover and reef health (live versus dead cover) for the Xisha Islands. Mean coral cover was 12.5% in 2014 and damaged reefs seemed to show signs of recovery. Coral cover in sheltered habitats such as lagoon patch reefs and biotic dense zones of reef flats was higher, but there were large regional differences and low diversity. In contrast, the more exposed reef slopes had high coral diversity, along with high and more equal distributions of coral cover. Mean hard coral cover of other zones was <10%. The total Xisha reef system was estimated to cover 1 060 km2, and the emergent reefs covered 787 m2. Hard corals of emergent reefs were considered to cover 97 km2. The biotic dense zone of the reef flat was a very common zone on all simple atolls, especially the broader northern reef flats. The total cover of live and dead coral can reach above 70% in this zone, showing an equilibrium between live and dead coral as opposed to coral and algae. This information regarding the spatial distribution of hard coral can support and inform the management of Xisha reef ecosystems.

Reef-scale modeling of coral calcification responses to ocean acidification and sea-level rise

NASA Astrophysics Data System (ADS)

Nakamura, Takashi; Nadaoka, Kazuo; Watanabe, Atsushi; Yamamoto, Takahiro; Miyajima, Toshihiro; Blanco, Ariel C.

2018-03-01

To predict coral responses to future environmental changes at the reef scale, the coral polyp model (Nakamura et al. in Coral Reefs 32:779-794, 2013), which reconstructs coral responses to ocean acidification, flow conditions and other factors, was incorporated into a reef-scale three-dimensional hydrodynamic-biogeochemical model. This coupled reef-scale model was compared to observations from the Shiraho fringing reef, Ishigaki Island, Japan, where the model accurately reconstructed spatiotemporal variation in reef hydrodynamic and geochemical parameters. The simulated coral calcification rate exhibited high spatial variation, with lower calcification rates in the nearshore and stagnant water areas due to isolation of the inner reef at low tide, and higher rates on the offshore side of the inner reef flat. When water is stagnant, bottom shear stress is low at night and thus oxygen diffusion rate from ambient water to the inside of the coral polyp limits respiration rate. Thus, calcification decreases because of the link between respiration and calcification. A scenario analysis was conducted using the reef-scale model with several pCO2 and sea-level conditions based on IPCC (Climate change 2013: the physical science basis. Contribution of working group I to the fifth assessment report of the intergovernmental panel on climate change, Cambridge University Press, Cambridge, 2013) scenarios. The simulation indicated that the coral calcification rate decreases with increasing pCO2. On the other hand, sea-level rise increases the calcification rate, particularly in the nearshore and the areas where water is stagnant at low tide under present conditions, as mass exchange, especially oxygen exchange at night, is enhanced between the corals and their ambient seawater due to the reduced stagnant period. When both pCO2 increase and sea-level rise occur concurrently, the calcification rate generally decreases due to the effects of ocean acidification. However, the calcification rate in some inner-reef areas will increase because the positive effects of sea-level rise offset the negative effects of ocean acidification, and total calcification rate will be positive only under the best-case scenario (RCP 2.6).

Modeling Reef Island Morphodynamics in Profile and Plan View

NASA Astrophysics Data System (ADS)

Ashton, A. D.; Ortiz, A. C.; Lorenzo-Trueba, J.

2016-12-01

Reef islands are carbonate detrital landforms perched atop shallow reef flats of atolls and barrier reef systems. Often comprising the only subaerial, inhabitable land of many island chains and island nations, these low-lying, geomorphically active landforms face considerable hazards from climate change. While there hazards include wave overtopping and groundwater salinization, sea-level rise and wave climate change will affect sediment transport and shoreline dynamics, including the possibility for wholesale reorganization of the islands themselves. Here we present a simplified morphodynamic model that can spatially quantify the potential impacts of climate change on reef islands. Using parameterizations of sediment transport pathways and feedbacks from previously presented XBeach modeling results, we investigate how sea-level rise, change in storminess, and different carbonate production rates can affect the profile evolution of reef islands, including feedbacks with the shallow reef flat that bounds the islands offshore (and lagoonward). Model results demonstrate that during rising sea levels, the reef flat can serve as a sediment trap, starving reef islands of detrital sediment that could otherwise fortify the shore against sea-level-rise-driven erosion. On the other hand, if reef flats are currently shallow (likely due to geologic inheritance or biologic cementation processes) such that sea-level rise does not result in sediment accumulation on the flat, reef island shorelines may be more resilient to rising seas. We extend the model in plan view to examine how long-term (decadal) changes in wave approach direction could affect reef island shoreline orientation. We compare model results to historical and geologic change for different case studies on the Marshall Islands. This simplified modeling approach, focusing on boundary dynamics and mass fluxes, provides a quantitative tool to predict the response of reef island environments to climate change.

Linking Demographic Processes of Juvenile Corals to Benthic Recovery Trajectories in Two Common Reef Habitats

PubMed Central

Doropoulos, Christopher; Ward, Selina; Roff, George; González-Rivero, Manuel; Mumby, Peter J.

2015-01-01

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21–50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments. PMID:26009892

Linking demographic processes of juvenile corals to benthic recovery trajectories in two common reef habitats.

PubMed

Doropoulos, Christopher; Ward, Selina; Roff, George; González-Rivero, Manuel; Mumby, Peter J

2015-01-01

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21-50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments.

Initial colonization, erosion and accretion of coral substrate

NASA Astrophysics Data System (ADS)

Davies, Peter J.; Hutchings, Patricia A.

1983-08-01

Blocks cut from Porites lutea were laid on the fore reef slope, reef flat and a lagoonal patch reef at Lizard Island, in the Northern Great Barrier Reef, and replicates removed from each environment at intervals of three months over a period of one and a half years. Variations in bioeroders and bioaccretors were noted. Microfaunas are far more numerous than macrofaunas as block colonizers; the principal borers are polychaete worms, whereas encrusters are molluscs, bryozoans, serpulids and solitary corals. The reef slope is more readily colonised by microfauna pioneer communities than are the other areas. All the environments exhibit a change from cirratulids to either sabellids or spionids (polydorids) over the length of the experiment. Accretion occurred on all blocks during the experiment, with significant differences detectable between environments; both reef slope and reef flat blocks showed weight increases of 9 10% whereas blocks from the patch reef showed increases of 15%. Annual erosion rates produced by polychaete worms are 0.694 kg m-2 year-1 (reef front), 0.843 kg m-2 year-1 (reef flat) and 1.788 kg m-2 year-1 (patch reef).

Net ecosystem production, calcification and CO2 fluxes on a reef flat in Northeastern Brazil

NASA Astrophysics Data System (ADS)

Longhini, Cybelle M.; Souza, Marcelo F. L.; Silva, Ananda M.

2015-12-01

The carbon cycle in coral reefs is usually dominated by the organic carbon metabolism and precipitation-dissolution of CaCO3, processes that control the CO2 partial pressure (pCO2) in seawater and the CO2 fluxes through the air-sea interface. In order to characterize these processes and the carbonate system, four sampling surveys were conducted at the reef flat of Coroa Vermelha during low tide (exposed flat). Net ecosystem production (NEP), net precipitation-dissolution of CaCO3 (G) and CO2 fluxes across the air-water interface were calculated. The reef presented net autotrophy and calcification at daytime low tide. The NEP ranged from -8.7 to 31.6 mmol C m-2 h-1 and calcification from -13.1 to 26.0 mmol C m-2 h-1. The highest calcification rates occurred in August 2007, coinciding with the greater NEP rates. The daytime CO2 fluxes varied from -9.7 to 22.6 μmol CO2 m-2 h-1, but reached up to 13,900 μmol CO2 m-2 h-1 during nighttime. Carbon dioxide influx to seawater was predominant in the reef flat during low tide. The regions adjacent to the reef showed a supersaturation of CO2, acting as a source of CO2 to the atmosphere (from -22.8 to -2.6 mol CO2 m-2 h-1) in the reef flat during ebbing tide. Nighttime gas release to the atmosphere indicates a net CO2 release from the Coroa Vermelha reef flat within 24 h, and that these fluxes can be important to carbon budget in coral reefs.

Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia)

PubMed Central

2015-01-01

Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs is consistent with the disturbance-mosaic (microhabitat heterogeneity) hypothesis. Calculations of the FORAM Index (FI), a single metric index to assess reef vitality, indicate that all fore- and most back-reef environments support active carbonate accretion and provide habitat suitability for carbonate producers dependent on algal symbiosis. Lowest suitability values were recorded within the innermost bays, an area where natural and increasing anthropogenic influences continue to impact the reefs. The presence of habitat specific assemblages and numerical abundance values of individual taxa show that benthic foraminifera are excellent recorders of environmental perturbations and good indicators useful in modern and ancient ecological and environmental studies. PMID:26710320

Mechanisms of sediment transport to shoreline salients onshore of fringing coral reefs

NASA Astrophysics Data System (ADS)

Hansen, J.; Cuttler, M.; Traykovski, P.; Lowe, R.; Buckley, M. L.; Storlazzi, C. D.; Rosenberger, K. J.

2016-12-01

Shoreline salients, often extending several hundred metres seaward relative to the adjacent shoreline, are a common morphological feature found in the lee of many fringing coral reefs globally. However, the physical mechanisms that govern the formation and equilibrium dynamics of these salients remains poorly understood. A recent field experiment in NW Australia at Ningaloo Reef examined the mechanism of sediment delivery to a salient that extends 700 m seaward onshore of a 4 km long fringing reef that sits 2 km offshore. The experimental array consisted of wave, water level, and velocity measurements at >20 sites from 20 m depth offshore of the reef, the reef crest, and numerous sites throughout the 3 m depth lagoon shoreward of the reef. Two sites within the lagoon, one each side of the salient, also measured the migration of 0.5 m wavelength, 0.1 m high sand ripples using horizontal and vertically mounted echo sounders. Consistent with existing theory, mean (wave-averaged) flows in the lagoon shoreward of the reef and along the shoreline were divergent up to 0.2 m/s, corresponding to the circulation pattern resulting from wave breaking induced setup on the reef and associated mass flux into the lagoon, and seaward return flow through two lateral channels. These divergent alongshore mean flows are inconsistent the accreted shoreline morphology. However, the two sites that measured ripple properties and migration showed consistent migration in the local (salient following) onshore direction up to 2 m/day (mean 0.14 m/day across the two sites) resulting in onshore sediment fluxes as large as 200 kg/m/day (mean 10.1 kg/m/day) assuming ripple migration equates to net bedload transport. Despite the considerable infragravity energy within the lagoon ( 50% of the energy spectrum) the 0.5 m wavelength ripples were suborbital based on the orbital diameter of the 0.2-0.5 m high short waves which enter the lagoon via refraction through the lateral channels and incomplete dissipation over the reef. These preliminary results indicate that onshore ripple migration of biogenic sediment generated by the coral reef from short waves within the lagoon is the primary source of sediment to the salient. Additional analyses will focus on the hydrodynamic mechanisms responsible for the variable rate of migration.

Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia).

PubMed

Fajemila, Olugbenga T; Langer, Martin R; Lipps, Jere H

2015-01-01

Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs is consistent with the disturbance-mosaic (microhabitat heterogeneity) hypothesis. Calculations of the FORAM Index (FI), a single metric index to assess reef vitality, indicate that all fore- and most back-reef environments support active carbonate accretion and provide habitat suitability for carbonate producers dependent on algal symbiosis. Lowest suitability values were recorded within the innermost bays, an area where natural and increasing anthropogenic influences continue to impact the reefs. The presence of habitat specific assemblages and numerical abundance values of individual taxa show that benthic foraminifera are excellent recorders of environmental perturbations and good indicators useful in modern and ancient ecological and environmental studies.

Detection for flatness of large surface based on structured light

NASA Astrophysics Data System (ADS)

He, Wenyan; Cao, Xuedong; Long, Kuang; Peng, Zhang

2016-09-01

In order to get flatness of a large plane, this paper set up a measurement system, composed by Line Structured Light, imaging system, CCD, etc. Line Structured Light transmits parallel fringes at a proper angle onto the plane which is measured; the imaging system and CCD locate above the plane to catch the fringes. When the plane is perfect, CCD will catch straight fringes; however, the real plane is not perfect; according to the theory of projection, the fringes caught by CCD will be distorted by convex and concave. Extract the center of line fringes to obtain the distortion of the fringe, according to the functional relationship between the distortion of fringes and the height which is measured, then we will get flatness of the entire surface. Data from experiment approached the analysis of theory. In the simulation, the vertical resolution is 0.0075 mm per pixel when measuring a plane of 400mm×400mm, choosing the size of CCD 4096×4096, at the angle 85°. Helped by sub-pixel, the precision will get the level of submicron. There are two obvious advantages: method of surface sampling can increase the efficiency for auto-repairing of machines; considering the center of fringe is required mainly in this system, as a consequence, there is no serious demand for back light.

Fringing coral reef condition decline: assembling the puzzle of human impact associated to coastal development.

NASA Astrophysics Data System (ADS)

Garza-Perez, J. R.; Lopez-Patoni, A.; Naranjo-Garcia, M. J.

2014-12-01

Coral cover at Akumal fringing coral reef decreased 50% in a 13 yr. period, while the adjacent coastal zone increased its human-modified surface (associated to urban-tourist development) in 192%. In the same period, the number of local residents only increased 20% (1088 to1362) but the visitors did in 50% from ca. 200,000 to ca. 300,000. In this coastal zone, the phreatic acts as a storage of nutrients and pollutants from sources related to human activity, thus having a chronic run-off towards the reef, with acute episodes during the rainy season, specially during the anomalous rainy season of 2013. Using videotransects for monitoring the benthic reef components, changes were detected: from 2000 to 2013 the algae cover increased 166%, the reef condition and the reef structure indexes decreased in 50%, and coral diseases incidence increased 25% after a spike increment of 150% in 2010. The role of anthropogenic-stress indicators (population, modified land area, nutrients) was explored along reef condition indicators (reef structure and diversity indexes, topographic complexity, benthic cover and coral diseases incidence) via spatial analysis and multivariate statistics. Spatial patterns of the change in reef condition derived from high-resolution satellite imagery also provided insight for the stressors analysis and their relationships along the study period. Stress indicators (land-modified area and population) are correlated to decreases in coral cover and in reef structure. Direct stressors as sedimentation, nutrients and pollutants seem to be related to the decrease in overall reef condition, although time-series data is lacking; the contextual interpretation of their effects, paired with benthic condition characteristics suggest a strong relationship between these stressors and the decrease in the condition of the reef.

Demise of reef-flat carbonate accumulation with late Holocene sea-level fall: Evidence from Molokai, Hawaii

USGS Publications Warehouse

Engels, M.S.; Fletcher, C.H.; Field, M.; Conger, C.L.; Bochicchio, C.

2008-01-01

Twelve cores from the protected reef-flat of Molokai revealed that carbonate sediment accumulation, ranging from 3 mm year-1 to less than 1 mm year-1, ended on average 2,500 years ago. Modern sediment is present as a mobile surface veneer but is not trapped within the reef framework. This finding is consistent with the arrest of deposition at the end of the mid-Holocene highstand, known locally as the "Kapapa Stand of the Sea," ???2 m above the present datum ca. 3,500 years ago in the main Hawaiian Islands. Subsequent erosion, non-deposition, and/or a lack of rigid binding were probable factors leading to the lack of reef-flat accumulation during the late Holocene sea-level fall. Given anticipated climate changes, increased sedimentation of reef-flat environments is to be expected as a consequence of higher sea level. ?? 2008 Springer-Verlag.

Earth Observations taken by Expedition 26 crewmember

NASA Image and Video Library

2010-11-27

ISS026-E-005121 (27 Nov. 2010) --- Tidal flats and channels on Long Island, Bahamas are featured in this image photographed by an Expedition 26 crew member on the International Space Station. The islands of the Bahamas in the Caribbean Sea are situated on large depositional platforms (the Great and Little Bahama Banks) composed mainly of carbonate sediments ringed by fringing reefs – the islands themselves are only the parts of the platform currently exposed above sea level. The sediments are formed mostly from the skeletal remains of organisms settling to the sea floor; over geologic time, these sediments will consolidate to form carbonate sedimentary rocks such as limestone. This detailed photograph provides a view of tidal flats and tidal channels near Sandy Cay on the western side of Long Island, located along the eastern margin of the Great Bahama Bank. The continually exposed parts of the island have a brown coloration in the image, a result of soil formation and vegetation growth (left). To the north of Sandy Cay an off-white tidal flat composed of carbonate sediments is visible; light blue-green regions indicate shallow water on the tidal flat. Tidal flow of seawater is concentrated through gaps in the anchored land surface, leading to formation of relatively deep tidal channels that cut into the sediments of the tidal flat. The channels, and areas to the south of the island, have a vivid blue coloration that provides a clear indication of deeper water (center).

Coastal Erosion in a Coral Reef Island, Taiping Island, South China Sea

NASA Astrophysics Data System (ADS)

Su, S.; Ma, G.; Liang, M.; Chu, J.

2011-12-01

Reef flats surrounding islands are known to dissipate much offshore wave energy, and thereby protect beaches from erosion. Taiping Island, the largest coral reef islands of the Spratly Islands in the South China Sea, has been observed the shorelines erosion on the southwest coast over past decades. It is recognized that wave and current processes across coral reefs affect reef-island development and morphology. A number of studies suggest effects of climate changes, sea-level rise and storm-intensity increase, determine the magnitude of wave energy on the reef platform and will likely intensify the erosion. The topographical change in the local region, the southwest reef flat was dredged a channel for navigation, may be a significant factor in influencing current characteristics. Numerical modeling is used to describe both hydrodynamics and sediment dynamics because there are no field measurements available around the reef flat. Field observations off the island conducted in August 2004 and November 2005 provides offshore wave characteristics of the predominant wind seasons. Numerical simulations perform the spatial and temporal variation of waves and current patterns and coastal erosion potential on the reef platform.

Control of paleoshorelines by trench forebulge uplift, Loyalty Islands

NASA Astrophysics Data System (ADS)

Dickinson, William R.

2013-07-01

Unlike most tropical Pacific islands, which lie along island arcs or hotspot chains, the Loyalty Islands between New Caledonia and Vanuatu owe their existence and morphology to the uplift of pre-existing atolls on the flexural forebulge of the New Hebrides Trench. The configuration and topography of each island is a function of distance from the crest of the uplifted forebulge. Both Maré and Lifou are fully emergent paleoatolls upon which ancient barrier reefs form highstanding annular ridges that enclose interior plateaus representing paleolagoon floors, whereas the partially emergent Ouvea paleoatoll rim flanks a drowned remnant lagoon. Emergent paleoshoreline features exposed by island uplift include paleoreef flats constructed as ancient fringing reefs built to past low tide levels and emergent tidal notches incised at past high tide levels. Present paleoshoreline elevations record uplift rates of the islands since last-interglacial and mid-Holocene highstands in global and regional sea levels, respectively, and paleoreef stratigraphy reflects net Quaternary island emergence. The empirical uplift rates vary in harmony with theoretical uplift rates inferred from the different positions of the islands in transit across the trench forebulge at the trench subduction rate. The Loyalty Islands provide a case study of island environments controlled primarily by neotectonics.

Characterization of sediment trapped by macroalgae on a Hawaiian reef flat

USGS Publications Warehouse

Stamski, R.E.; Field, M.E.

2006-01-01

Reef researchers studying community shifts in the balance between corals and fleshy macroalgae have noted that algae are often covered with sediment. This study characterizes sediment trapping by macroalgae within a Hawaiian reef habitat and constrains the controls on this process. Sediment-laden macroalgae were sampled and macroalgal cover was assessed on a wide (???1 km) reef flat off south-central Molokai. Macroalgae trapped a mean of 1.26 (??0.91 SD) grams of sediment per gram of dry weight biomass and that sediment was dominantly terrigenous mud (59% by weight). It was determined that biomass, as a proxy for algal size, and morphology were not strict controls on the sediment trapping process. Over 300 metric tons of sediment were estimated to be retained by macroalgae across 5.75 km2 of reef flat (54 g m-2), suggesting that this process is an important component of sediment budgets. In addition, understanding the character of sediment trapped by macroalgae may help constrain suspended sediment flux and has implications for nutrient dynamics in reef flat environments. ?? 2005 Elsevier Ltd. All rights reserved.

Characterization of sediment trapped by macroalgae on a Hawaiian reef flat

NASA Astrophysics Data System (ADS)

Stamski, Rebecca E.; Field, Michael E.

2006-01-01

Reef researchers studying community shifts in the balance between corals and fleshy macroalgae have noted that algae are often covered with sediment. This study characterizes sediment trapping by macroalgae within a Hawaiian reef habitat and constrains the controls on this process. Sediment-laden macroalgae were sampled and macroalgal cover was assessed on a wide (˜1 km) reef flat off south-central Molokai. Macroalgae trapped a mean of 1.26 (±0.91 SD) grams of sediment per gram of dry weight biomass and that sediment was dominantly terrigenous mud (59% by weight). It was determined that biomass, as a proxy for algal size, and morphology were not strict controls on the sediment trapping process. Over 300 metric tons of sediment were estimated to be retained by macroalgae across 5.75 km 2 of reef flat (54 g m -2), suggesting that this process is an important component of sediment budgets. In addition, understanding the character of sediment trapped by macroalgae may help constrain suspended sediment flux and has implications for nutrient dynamics in reef flat environments.

Shelters and Their Use by Fishes on Fringing Coral Reefs

PubMed Central

Ménard, Alexandre; Turgeon, Katrine; Roche, Dominique G.; Binning, Sandra A.; Kramer, Donald L.

2012-01-01

Coral reef fish density and species richness are often higher at sites with more structural complexity. This association may be due to greater availability of shelters, but surprisingly little is known about the size and density of shelters and their use by coral reef fishes. We quantified shelter availability and use by fishes for the first time on a Caribbean coral reef by counting all holes and overhangs with a minimum entrance diameter ≥3 cm in 30 quadrats (25 m2) on two fringing reefs in Barbados. Shelter size was highly variable, ranging from 42 cm3 to over 4,000,000 cm3, with many more small than large shelters. On average, there were 3.8 shelters m−2, with a median volume of 1,200 cm3 and a total volume of 52,000 cm3m−2. The number of fish per occupied shelter ranged from 1 to 35 individual fishes belonging to 66 species, with a median of 1. The proportion of shelters occupied and the number of occupants increased strongly with shelter size. Shelter density and total volume increased with substrate complexity, and this relationship varied among reef zones. The density of shelter-using fish was much more strongly predicted by shelter density and median size than by substrate complexity and increased linearly with shelter density, indicating that shelter availability is a limiting resource for some coral reef fishes. The results demonstrate the importance of large shelters for fish density and support the hypothesis that structural complexity is associated with fish abundance, at least in part, due to its association with shelter availability. This information can help identify critical habitat for coral reef fishes, predict the effects of reductions in structural complexity of natural reefs and improve the design of artificial reefs. PMID:22745664

Coral mortality induced by the 2015-2016 El-Niño in Indonesia: the effect of rapid sea level fall

NASA Astrophysics Data System (ADS)

Elvan Ampou, Eghbert; Johan, Ofri; Menkes, Christophe E.; Niño, Fernando; Birol, Florence; Ouillon, Sylvain; Andréfouët, Serge

2017-02-01

The 2015-2016 El-Niño and related ocean warming has generated significant coral bleaching and mortality worldwide. In Indonesia, the first signs of bleaching were reported in April 2016. However, this El Niño has impacted Indonesian coral reefs since 2015 through a different process than temperature-induced bleaching. In September 2015, altimetry data show that sea level was at its lowest in the past 12 years, affecting corals living in the bathymetric range exposed to unusual emersion. In March 2016, Bunaken Island (North Sulawesi) displayed up to 85 % mortality on reef flats dominated by Porites, Heliopora and Goniastrea corals with differential mortality rates by coral genus. Almost all reef flats showed evidence of mortality, representing 30 % of Bunaken reefs. For reef flat communities which were living at a depth close to the pre-El Niño mean low sea level, the fall induced substantial mortality likely by higher daily aerial exposure, at least during low tide periods. Altimetry data were used to map sea level fall throughout Indonesia, suggesting that similar mortality could be widespread for shallow reef flat communities, which accounts for a vast percent of the total extent of coral reefs in Indonesia. The altimetry historical records also suggest that such an event was not unique in the past two decades, therefore rapid sea level fall could be more important in the dynamics and resilience of Indonesian reef flat communities than previously thought. The clear link between mortality and sea level fall also calls for a refinement of the hierarchy of El Niño impacts and their consequences on coral reefs.

Wave and setup dynamics on steeply-sloping reefs with large bottom roughness

NASA Astrophysics Data System (ADS)

Buckley, M. L.; Hansen, J.; Lowe, R.

2016-12-01

High-resolution observations from a wave flume were used to investigate the dynamics of wave setup over a steeply-sloping fringing reef profile with the effect of bottom roughness modeled using roughness elements scaled to mimic a coral reef. Results with roughness were compared with smooth bottom runs across sixteen offshore wave and still water level conditions. The time-averaged and depth-integrated force balance was evaluated from observations collected at seventeen locations across the flume, which was found to consist of cross-shore pressure and radiation stress gradients whose sum was balanced by mean quadratic bottom stresses. We found that when radiation stress gradients were calculated from observations of the radiation stress derived from linear wave theory, both wave setdown and setup were under predicted for the majority of wave and water level conditions tested. Inaccuracies in the predicted setdown and setup were improved by including a wave roller model, which provides a correction to the kinetic energy predicted by linear wave theory for breaking waves and produces a spatial delay in the wave forcing that was consistent with the observations. The introduction of roughness had two primary effects. First, the amount of wave energy dissipated during wave breaking was reduced due to frictional wave dissipation that occurred on the reef slope offshore of the breakpoint. Second, offshore directed mean bottom stresses were generated by the interaction of the combined wave-current velocity field with the roughness elements. These two mechanisms acted counter to one another. As a result, setup on the reef flat was comparable (7% mean difference) between corresponding rough and smooth runs. These findings are used to assess prior results from numerical modelling studies of reefs, and also to discuss the broader implications for how steep slopes and large roughness influences setup dynamics for general nearshore systems.

Groundwater and porewater as major sources of alkalinity to a fringing coral reef lagoon (Muri Lagoon, Cook Islands)

NASA Astrophysics Data System (ADS)

Cyronak, T.; Santos, I. R.; Erler, D. V.; Eyre, B. D.

2013-04-01

To better predict how ocean acidification will affect coral reefs, it is important to understand how biogeochemical cycles on reefs alter carbonate chemistry over various temporal and spatial scales. This study quantifies the contribution of shallow porewater exchange (as quantified from advective chamber incubations) and fresh groundwater discharge (as traced by 222Rn) to total alkalinity (TA) dynamics on a fringing coral reef lagoon along the southern Pacific island of Rarotonga over a tidal and diel cycle. Benthic alkalinity fluxes were affected by the advective circulation of water through permeable sediments, with net daily flux rates of carbonate alkalinity ranging from -1.55 to 7.76 mmol m-2 d-1, depending on the advection rate. Submarine groundwater discharge (SGD) was a source of TA to the lagoon, with the highest flux rates measured at low tide, and an average daily TA flux of 1080 mmol m-2 d-1 at the sampling site. Both sources of TA were important on a reef-wide basis, although SGD acted solely as a delivery mechanism of TA to the lagoon, while porewater advection was either a sink or source of TA dependent on the time of day. This study describes overlooked sources of TA to coral reef ecosystems that can potentially alter water column carbonate chemistry. We suggest that porewater and groundwater fluxes of TA should be taken into account in ocean acidification models in order to properly address changing carbonate chemistry within coral reef ecosystems.

Evaluation of anthropogenic influences on the Luhuitou fringing reef via spatial and temporal analyses (from isotopic values)

NASA Astrophysics Data System (ADS)

Cao, D.; Cao, W.; Yu, K.; Wu, G.; Yang, J.; Su, X.; Wang, F.

2017-05-01

Coral reefs have suffered remarkable declines worldwide. Nutrient overenrichment is considered to be one of the primary local causes. The Luhuitou fringing reef in southern China is a well-known tourist destination that is subject to enormous coastal renovation. The mean δ13C, δ15N value, and carbon over nitrogen ratio (C/N) of particulate organic matter were -21.56 ± 1.94‰, 7.04 ± 3.81‰, and 5.81 ± 1.86, respectively, suggesting mixed sources of carbon and nitrogen. The IsoError calculations suggested that marine phytoplankton and marine benthic algae dominated the majority of carbon sources, while anthropogenic and terrestrial organic nitrogen dominated the nitrogen sources. A tendency toward greater terrestrial detritus and anthropogenic-derived discharges was found during dry seasons and greater marine-derived organic matter during wet seasons. These results demonstrated the existence of anthropogenic influences and high dissolved inorganic nitrogen concentrations and C/N ratios. Anthropogenic nutrient discharge moderated nitrogen limitation, whereas phosphorus became more important to the reef ecosystem. Despite the marine carbon sources dominated, freshwater and terrestrial-derived organic carbon sources were also very important. Meanwhile, anthropogenic and terrestrial organic nitrogen sources were dominant. Therefore, pollution from more extensive region and anthropogenic activities from riverine sewage discharges adjacent to reefs should be focused to effectively reduce human-derived nutrients on reefs.

Adaptation to reef habitats through selection on the coral animal and its associated microbiome.

PubMed

van Oppen, Madeleine J H; Bongaerts, Pim; Frade, Pedro; Peplow, Lesa M; Boyd, Sarah E; Nim, Hieu T; Bay, Line K

2018-06-13

Spatially adjacent habitats on coral reefs can represent highly distinct environments, often harbouring different coral communities. Yet, certain coral species thrive across divergent environments. It is unknown whether the forces of selection are sufficiently strong to overcome the counteracting effects of the typically high gene flow over short distances, and for local adaptation to occur. We screened the coral genome (using restriction-site-associated sequencing [RAD-seq]), and characterized both the dinoflagellate photosymbiont and tissue-associated prokaryote microbiomes (using metabarcoding) of a reef flat and slope population of the reef-building coral, Pocillopora damicornis, at two locations on Heron Island in the southern Great Barrier Reef. Reef flat and slope populations were separated by <100 m horizontally and ~5 m vertically and the two study locations were separated by ~1 km. For the coral host, genetic divergence between habitats was much greater than between locations, suggesting limited gene flow between the flat and slope populations. Consistent with environmental selection, outlier loci primarily belonged to the conserved, minimal cellular stress response, likely reflecting adaptation to the different temperature and irradiance regimes on the reef flat and slope. Similarly, the prokaryote community differed across both habitat and, to a lesser extent, location, whereas the dinoflagellate photosymbionts differed by habitat but not location. The observed intra-specific diversity associated with divergent habitats supports that environmental adaptation involves multiple members of the coral holobiont. Adaptive alleles or microbial associations present in coral populations from the environmentally-variable reef flat may provide a source of adaptive variation for assisted evolution approaches, through assisted gene flow, artificial cross-breeding or probiotic inoculations, with the aim to increase climate resilience in the slope populations. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Impact of diurnal temperature fluctuations on larval settlement and growth of the reef coral Pocillopora damicornis

NASA Astrophysics Data System (ADS)

Jiang, Lei; Sun, You-Fang; Zhang, Yu-Yang; Zhou, Guo-Wei; Li, Xiu-Bao; McCook, Laurence J.; Lian, Jian-Sheng; Lei, Xin-Ming; Liu, Sheng; Cai, Lin; Qian, Pei-Yuan; Huang, Hui

2017-12-01

Diurnal fluctuations in seawater temperature are ubiquitous on tropical reef flats. However, the effects of such dynamic temperature variations on the early stages of corals are poorly understood. In this study, we investigated the responses of larvae and new recruits of Pocillopora damicornis to two constant temperature treatments (29 and 31 °C) and two diurnally fluctuating treatments (28-31 and 30-33 °C with daily means of 29 and 31 °C, respectively) simulating the 3 °C diel oscillations at 3 m depth on the Luhuitou fringing reef (Sanya, China). Results showed that the thermal stress on settlement at 31 °C was almost negated by the fluctuating treatment. Further, neither elevated temperature nor temperature fluctuations caused bleaching responses in recruits, while the maximum excitation pressure over photosystem II (PSII) was reduced under fluctuating temperatures. Although early growth and development were highly stimulated at 31 °C, oscillations of 3 °C had little effects on budding and lateral growth at either mean temperature. Nevertheless, daytime encounters with the maximum temperature of 33 °C in fluctuating 31 °C elicited a notable reduction in calcification compared to constant 31 °C. These results underscore the complexity of the effects caused by diel temperature fluctuations on early stages of corals and suggest that ecologically relevant temperature variability could buffer warming stress on larval settlement and dampen the positive effects of increased temperatures on coral growth.

Coral communities of the remote atoll reefs in the Nansha Islands, southern South China Sea.

PubMed

Zhao, M X; Yu, K F; Shi, Q; Chen, T R; Zhang, H L; Chen, T G

2013-09-01

During the months of May and June in the year 2007, a survey was conducted regarding coral reef communities in the remote atolls (Zhubi Reef and Meiji Reef) of Nansha Islands, southern South China Sea. The goals of the survey were to: (1) for the first time, compile a scleractinian coral check-list; (2) estimate the total richness, coral cover, and growth forms of the community; and (3) describe preliminary patterns of community structure according to geomorphological units. Findings of this survey revealed a total of 120 species of scleractinia belonging to 40 genera, while the average coral cover was 21 %, ranging from less than 10 % to higher than 50 %. Branching and massive corals were also found to be the most important growth forms of the whole coral community, while Acropora, Montipora, and Porites were the three dominant genera in the overall region, with their contributions to total coral cover measuring 21, 22, and 23 %, respectively. Overall, coral communities of the Nansha Islands were in a relative healthy condition with high species diversity and coral cover. Spatial pattern of coral communities existed among various geomorphological units. Mean coral cover was highest in the patch reef within the lagoon, followed by the fore reef slope, reef flat, and lagoon slope. The greatest contributors to total coral cover were branching Acropora (45 %) in the lagoon slope, branching Montipora (44 %) in the reef flat, and massive Porites (51 %) in the patch reef. Coral cover in the fore reef revealed a greater range of genera than in other habitats. The leeward fore reef slope had higher coral cover (> 50 %) when compared with the windward slope (< 10 %). The coral communities of the inner reef flat were characterized by higher coral cover (27 %) and dominant branching Montipora corals, while lower coral cover (4 %) was dominated by Psammocora with massive growth forms on the outer reef flat. Destructive fishing and coral bleaching were two major threats to coral communities in the study area.

Seven new species of the genus Xestoleberis (Ostracoda: Podocopida: Cytheroidea) from the Fiji Archipelago.

PubMed

Chand, Prerna; Kamiya, Takahiro

2016-12-18

The genus Xestoleberis has a global distribution, and although they are predominant in shallow marine environments adapted to both sediment and algal habitats, only two species of this genus, Xestoleberis curta (Brady, 1866) and Xestoleberis variegata Brady, 1880, have previously been reported from the Fiji archipelago. Herein we report seven new species of the genus Xestoleberis from intertidal environments of fringing reef flats of the Fiji Islands: Xestoleberis becca n. sp., Xestoleberis concava n. sp., Xestoleberis gracilariaii n. sp., Xestoleberis marcula n. sp., Xestoleberis natuvuensis n. sp., Xestoleberis penna n. sp. and Xestoleberis petrosa n. sp. With the exception of X. becca n. sp., Xestoleberis species show restricted distribution within Fijian waters. The possible causes for their distribution patterns are suggested to be physical barriers imposed by the fast flowing Bligh Water currents, and islands separated by deep ocean waters.

Acidification mediated by a river plume and coastal upwelling on a fringing reef at the east coast of Hainan Island, Northern South China Sea

NASA Astrophysics Data System (ADS)

Dong, Xu; Huang, Haining; Zheng, Nan; Pan, Aijun; Wang, Sumin; Huo, Cheng; Zhou, Kaiwen; Lin, Hui; Ji, Weidong

2017-09-01

We investigated the dynamics of carbonate system which was greatly modulated by a river plume and coastal upwelling in July 2014 and July 2015 at the east coast of Hainan Island where a fringing reef distributes inshore. By using a three end-member mixing model, we semiquantitatively estimated the removal of dissolved inorganic carbon (DIC) mediated by biological production in the river plume and upwelled water to be 13 ± 17 and 15 ± 16 μmol kg-1, respectively. The enhanced organic production was mainly responsible for these DIC consumptions in both two regimes, however, nearly a half of DIC removal was attributed to biocalcification in the plume system while it was negligible in the upwelling system. Furthermore, the modeled results over reefs revealed that river plume and coastal upwelling were two major threats of acidification to coral communities at the east coast of Hainan Island during cruises. In comparison, the biological contribution to acidification was limited for balancing between organic production and biocalcification during July 2014 cruise, whereas the acidification was greatly intensified by organic degradation during July 2015 cruise. It was verified that naturally local acidification (physical and biological processes) played a major role in great pH decreases on a short-term scale, leading to coastal waters more vulnerable to anthropogenic "ocean acidification" (uptake of atmospheric CO2) by reducing buffering capacity of waters. Finally, effects of acidification associated with other local threats on a fringing reef were further depicted with a conceptual model.

Do Penaeid Shrimps have a Preference for Mangrove Habitats? Distribution Pattern Analysis on Inhaca Island, Mozambique

NASA Astrophysics Data System (ADS)

Rönnbäck, P.; Macia, A.; Almqvist, G.; Schultz, L.; Troell, M.

2002-09-01

Scientific information on how penaeid shrimps are distributed within mangrove ecosystems is scarce, which presents an obstacle for fisheries as well as mangrove management. This study investigated the prime nursery microhabitats for the two major commercial species in Mozambique-Penaeus indicus and Metapenaeus monoceros. Stake net enclosures were used to sample shrimps living among unvegetated shallows and mangroves at Inhaca Island, Mozambique, during three consecutive spring tide periods. Four microhabitats were sampled: (1) sand flat; (2) fringe Avicennia marina on sandy substrate; (3) fringe A. marina on muddy substrate; and (4) interior A. marina adjacent to the supratidal terrestrial margin. P. indicus had a significant preference for fringe mangroves over the adjacent sand flat (P<0·001 and P=0·05). Postlarval shrimps only occupied the sand flat, whereas the mangrove was utilized by postlarval, juvenile and sub-adult life stages. Within the fringe mangrove, there was no correlation between shrimp abundance and organic content of sediment (5·7-11·6 shrimps m-2). Shrimps utilized the most interior margin of the mangroves (0·35 shrimps m-2), although catch rates were significantly lower than in the mangrove fringe (P<0·001). M. monoceros was significantly (P<0·01), more abundant in the sand flat (0·44-2·1 shrimps m-2) than in the mangrove fringe (0·04-0·61 shrimps m-2), although this habitat preference was not evident for juvenile and sub-adult life stages. The results demonstrate the extensive use of mangrove habitats by penaeid shrimps. The confinement to mangroves for P. indicus, but not for M. monoceros, is discussed in the context of habitat characteristics and predation avoidance behaviour. Methodological considerations of the stake net technique are also outlined.

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia

PubMed Central

Mercière, Alexandre; Vermeij, Mark J. A.; Planes, Serge

2017-01-01

While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, where it thrives in a wide range of environments, the ecological and biological processes driving its distribution and population structure are not well understood. Here, we quantified this species’ population structure in five habitats with contrasting hydrodynamic regimes in Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped and measured over 45,000 m2 of surveyed reef. Due to the species’ sensitivity to fragmentation in response to strong water movement, hydrodynamic conditions (e.g. waves, pass and lagoonal circulation) corresponded to marked differences in colony size distributions, morphology and recruitment dynamics among habitats. The size structure varied among reef habitats with higher proportions of larger colonies in calm nearshore reefs (fringing and patch reefs), while populations were dominated by smaller colonies in the exposed fore reefs. The highest densities of fire corals were recorded in fore reef habitats (0.12–0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations (49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, most colonies grew as vertical sheets on encrusting bases making them more vulnerable to colony fragmentation, whereas fire corals were encrusting or massive in all other habitats. The lowest densities of M. platyphylla occurred in lagoonal habitats (0.02–0.04 n.m-2) characterized by a combination of low water movement and other physical and biological stressors. This study reports the first evidence of population structure of fire corals in two common reef environments and illustrates the importance of water flow in driving population dynamic processes of these reef-building species. PMID:28273119

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia.

PubMed

Dubé, Caroline E; Mercière, Alexandre; Vermeij, Mark J A; Planes, Serge

2017-01-01

While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, where it thrives in a wide range of environments, the ecological and biological processes driving its distribution and population structure are not well understood. Here, we quantified this species' population structure in five habitats with contrasting hydrodynamic regimes in Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped and measured over 45,000 m2 of surveyed reef. Due to the species' sensitivity to fragmentation in response to strong water movement, hydrodynamic conditions (e.g. waves, pass and lagoonal circulation) corresponded to marked differences in colony size distributions, morphology and recruitment dynamics among habitats. The size structure varied among reef habitats with higher proportions of larger colonies in calm nearshore reefs (fringing and patch reefs), while populations were dominated by smaller colonies in the exposed fore reefs. The highest densities of fire corals were recorded in fore reef habitats (0.12-0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations (49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, most colonies grew as vertical sheets on encrusting bases making them more vulnerable to colony fragmentation, whereas fire corals were encrusting or massive in all other habitats. The lowest densities of M. platyphylla occurred in lagoonal habitats (0.02-0.04 n.m-2) characterized by a combination of low water movement and other physical and biological stressors. This study reports the first evidence of population structure of fire corals in two common reef environments and illustrates the importance of water flow in driving population dynamic processes of these reef-building species.

Does high diurnal variability in a reef flat from Ofu, American Samoa confer resistance to ocean acidification?

NASA Astrophysics Data System (ADS)

Koweek, D.; Samuel, L.; Mucciarone, D. A.; Woodson, C. B.; Monismith, S. G.; Dunbar, R. B.

2012-12-01

Forecasts for coral reefs under various ocean acidification scenarios are becoming increasingly complex due to significant inter-site variability in biogeochemistry, ecology, and physical oceanography. The reef flats of Ofu, American Samoa are a potential end-member of this vulnerability spectrum due to extremely high diurnal variability in their biogeochemistry. Here we present coupled biogeochemical and physical oceanographic measurements from a shallow reef flat on Ofu in November 2011. We observed diurnal temperature ranges of up to 7°C, along with diurnal pH and dissolved oxygen ranges of 0.6 units, and 160 percent of saturation, respectively. Carbon system measurements were less extreme. Alkalinity varied between 2240-2360 μmol/kg and total dissolved inorganic carbon (TDIC) ranged between 1850-2100 μmol/kg during the diurnal cycle. These observations suggest diurnal ranges of ~240ppm CO2 and 1.5 units of ΩAr. The larger diurnal range in TDIC relative to alkalinity suggests a reef environment dominated by photosynthesis. From these observations, we explore the balance between the dominant biogeochemical processes of production and calcification on the reef flat in more detail, along with its implication for conferring resistance to ocean acidification. We use calcification rate estimates to provide insight to patterns of day and night growth and/or dissolution on the reef. Finally, we present evidence of tidal modulation of the biogeochemical signals and discuss the role of localized physical circulation in helping to determine a reef's vulnerability to ocean acidification.

French Frigate Shoals reef health survey

USGS Publications Warehouse

Work, Thierry M.; Coles, Steve L.; Rameyer, Robert

2002-01-01

French Frigate Shoals consists of a large (31 nm) fringing reef partially enclosing a lagoon. A basalt pinnacle (La Perouse Pinnacle) arises approximately halfway between the two ends of the arcs of the fringing reefs. Tern Island is situated at the northern end of the lagoon and is surrounded by a dredged ship channel. The lagoon becomes progressively shallower from west to east and harbors a variety of marine life including corals, fish, marine mammals, and sea turtles (Amerson 1971). In 2000, an interagency survey of the northwestern Hawaiian Islands was done to document the fauna and flora in FFS (Maragos and Gulko, 2002). During that survey, 38 stations were examined, and 41 species of stony corals were documented, the most of any of the NW Hawaiian islands (Maragos and Gulko 2002). In some of these stations, corals with abnormalities were observed. The present study aimed to expand on the 2000 survey to evaluate the lesions in areas where they were documented.

Coral Ba/Ca records of sediment input to the fringing reef of the southshore of Moloka'i, Hawai'i over the last several decades

USGS Publications Warehouse

Prouty, N.G.; Field, M.E.; Stock, J.D.; Jupiter, S.D.; McCulloch, M.

2010-01-01

The fringing reef of southern Moloka’i is perceived to be in decline because of land-based pollution. In the absence of historical records of sediment pollution, ratios of coral Ba/Ca were used to test the hypothesis that sedimentation has increased over time. Baseline Ba/Ca ratios co-vary with the abundance of red, terrigenous sediment visible in recent imagery. The highest values at One Ali’i are near one of the muddiest parts of the reef. This co-varies with the lowest growth rate of all the sites, perhaps because the upstream Kawela watershed was historically leveed all the way to the nearshore, providing a fast-path for sediment delivery. Sites adjacent to small, steep watersheds have ∼decadal periodicities whereas sites adjacent to mangrove forests have shorter-period fluctuations that correspond to the periodicity of sediment transport in the nearshore, rather than the watershed. All four sites show a statistically significant upward trend in Ba/Ca.

Response of coral reefs to climate change: Expansion and demise of the southernmost Pacific coral reef

NASA Astrophysics Data System (ADS)

Woodroffe, Colin D.; Brooke, Brendan P.; Linklater, Michelle; Kennedy, David M.; Jones, Brian G.; Buchanan, Cameron; Mleczko, Richard; Hua, Quan; Zhao, Jian-xin

2010-08-01

Coral reefs track sea level and are particularly sensitive to changes in climate. Reefs are threatened by global warming, with many experiencing increased coral bleaching. Warmer sea surface temperatures might enable reef expansion into mid latitudes. Here we report multibeam sonar and coring that reveal an extensive relict coral reef around Lord Howe Island, which is fringed by the southernmost reef in the Pacific Ocean. The relict reef, in water depths of 25-50 m, flourished in early Holocene and covered an area more than 20 times larger than the modern reef. Radiocarbon and uranium-series dating indicates that corals grew between 9000 and 7000 years ago. The reef was subsequently drowned, and backstepped to its modern limited extent. This relict reef, with localised re-establishment of corals in the past three millennia, could become a substrate for reef expansion in response to warmer temperatures, anticipated later this century and beyond, if corals are able to recolonise its surface.

Upper Miocene reef complex of Mallorca, Balearic Islands, Spain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pomar, L.

1988-02-01

The late Tortonian-Messinian coral reef platform of south Mallorca onlaps a folded middle late Miocene carbonate platform on which progradation of up to 20 km occurs. Vertical sea cliffs (up to 100 m high) superbly show the last 5 km of this progradation and complement the numerous water-well cores from the island interior. The Mallorca reef presents the most complete facies zonation of the Miocene reefs of the western Mediterranean. The reef wall framework is up to 20 m thick and shows (1) erosional reef flat with reef breccia and small corals; (2) spur-and-grove zone with large, massive corals; (3)more » deep buttresses and pinnacles with terraces of branching corals; and (4) deep reef wall with flat, laminar coral colonies, branching red algae, and Halimeda sands.« less

Groundwater and porewater as a major source of alkalinity to a fringing coral reef lagoon (Muri Lagoon, Cook Islands)

NASA Astrophysics Data System (ADS)

Cyronak, T.; Santos, I. R.; Erler, D. V.; Eyre, B. D.

2012-11-01

To better predict how ocean acidification will affect coral reefs, it is important to understand how biogeochemical cycles on reefs alter carbonate chemistry over various temporal and spatial scales. This study quantifies the contribution of fresh groundwater discharge (as traced by radon) and shallow porewater exchange (as quantified from advective chamber incubations) to total alkalinity (TA) dynamics on a fringing coral reef lagoon along the southern Pacific island of Rarotonga over a tidal and diel cycle. Benthic alkalinity fluxes were affected by the advective circulation of water through permeable sediments, with net daily flux rates of carbonate alkalinity ranging from -1.55 to 7.76 mmol m-2 d-1, depending on the advection rate. Submarine groundwater discharge (SGD) was a source of TA to the lagoon, with the highest flux rates measured at low tide, and an average daily TA flux of 1080 mmol m-2 d-1. Both sources of TA were important on a reef wide basis, although SGD acted solely as a delivery mechanism of TA to the lagoon, while porewater advection was either a sink or source of TA dependant on the time of day. On a daily basis, groundwater can contribute approximately 70% to 80% of the TA taken up by corals within the lagoon. This study describes overlooked sources of TA to coral reef ecosystems that can potentially alter water-column carbonate chemistry. We suggest that porewater and groundwater fluxes of TA should be taken into account in ocean acidification models in order to properly address changing carbonate chemistry within coral reef ecosystems.

Temporal and Spatial Comparisons of Underwater Sound Signatures of Different Reef Habitats in Moorea Island, French Polynesia.

PubMed

Bertucci, Frédéric; Parmentier, Eric; Berten, Laëtitia; Brooker, Rohan M; Lecchini, David

2015-01-01

As environmental sounds are used by larval fish and crustaceans to locate and orientate towards habitat during settlement, variations in the acoustic signature produced by habitats could provide valuable information about habitat quality, helping larvae to differentiate between potential settlement sites. However, very little is known about how acoustic signatures differ between proximate habitats. This study described within- and between-site differences in the sound spectra of five contiguous habitats at Moorea Island, French Polynesia: the inner reef crest, the barrier reef, the fringing reef, a pass and a coastal mangrove forest. Habitats with coral (inner, barrier and fringing reefs) were characterized by a similar sound spectrum with average intensities ranging from 70 to 78 dB re 1 μPa.Hz(-1). The mangrove forest had a lower sound intensity of 70 dB re 1 μPa.Hz(-1) while the pass was characterized by a higher sound level with an average intensity of 91 dB re 1 μPa.Hz(-1). Habitats showed significantly different intensities for most frequencies, and a decreasing intensity gradient was observed from the reef to the shore. While habitats close to the shore showed no significant diel variation in sound intensities, sound levels increased at the pass during the night and barrier reef during the day. These two habitats also appeared to be louder in the North than in the West. These findings suggest that daily variations in sound intensity and across-reef sound gradients could be a valuable source of information for settling larvae. They also provide further evidence that closely related habitats, separated by less than 1 km, can differ significantly in their spectral composition and that these signatures might be typical and conserved along the coast of Moorea.

Geologic evidence for catastrophic marine inundation in 1200–1480 C.E. near the Puerto Rico Trench at Anegada, British Virgin Islands

USGS Publications Warehouse

Atwater, Brian F.; ten Brink, Uri S.; Cescon, Anna Lisa; Feuillet, Nathalie; Fuentes, Zamara; Halley, Robert B.; Nuñez, Carlos; Reinhardt, Eduard G.; Roger, Jean; Sawai, Yuki; Spiske, Michaela; Tuttle, Martitia P.; Wei, Yong; Weil-Accardo, Jennifer

2017-01-01

Extraordinary marine inundation scattered clasts southward on the island of Anegada, 120 km south of the Puerto Rico Trench, sometime between 1200 and 1480 calibrated years (cal yr) CE. Many of these clasts were likely derived from a fringing reef and from the sandy flat that separates the reef from the island’s north shore. The scattered clasts include no fewer than 200 coral boulders, mapped herein for the first time and mainly found hundreds of meters inland. Many of these are complete colonies of the brain coral Diploria strigosa. Other coral species represented include Orbicella (formerly Montastraea) annularis, Porites astreoides, and Acropora palmata. Associated bioclastic carbonate sand locally contains articulated cobble-size valves of the lucine Codakia orbicularis and entire conch shells of Strombus gigas, mollusks that still inhabit the sandy shallows between the island’s north shore and a fringing reef beyond. Imbricated limestone slabs are clustered near some of the coral boulders. In addition, fields of scattered limestone boulders and cobbles near sea level extend mainly southward from limestone sources as much as 1 km inland. Radiocarbon ages have been obtained from 27 coral clasts, 8 lucine valves, and 3 conch shells. All these additional ages predate 1500 cal yr CE, all but 2 are in the range 1000–1500 cal yr CE, and 16 of 22 brain coral ages cluster in the range 1200–1480 cal yr CE. The event marked by these coral and mollusk clasts likely occurred in the last centuries before Columbus (before 1492 CE).The pre-Columbian deposits surpass Anegada’s previously reported evidence for extreme waves in post-Columbian time. The coarsest of the modern storm deposits consist of coral rubble that lines the north shore and sandy fans on the south shore; neither of these storm deposits extends more than 50 m inland. More extensive overwash, perhaps by the 1755 Lisbon tsunami, is marked primarily by a sheet of sand and shells found mainly below sea level beneath the floors of modern salt ponds. This sheet extends more than 1 km southward from the north shore and dates to the interval 1650–1800 cal yr CE. Unlike the pre-Columbian deposits, it lacks coarse clasts from the reef or reef flat; its shell assemblage is instead dominated by cerithid gastropods that were merely stirred up from a marine pond in the island’s interior.In their inland extent and clustered pre-Columbian ages, the coral clasts and associated deposits suggest extreme waves unrivaled in recent millennia at Anegada. Bioclastic sand coats limestone 4 m above sea level in areas 0.7 and 1.3 km from the north shore. A coral boulder of nearly 1 m3 is 3 km from the north shore by way of an unvegetated path near sea level. As currently understood, the extreme flooding evidenced by these and other clasts represents either an extraordinary storm or a tsunami of nearby origin. The storm would need to have produced tsunami-like bores similar to those of 2013 Typhoon Haiyan in the Philippines. Normal faults and a thrust fault provide nearby tsunami sources along the eastern Puerto Rico Trench.

Major Sources of Organic Matter in a Complex Coral Reef Lagoon: Identification from Isotopic Signatures (δ13C and δ15N)

PubMed Central

Briand, Marine J.; Bonnet, Xavier; Goiran, Claire; Guillou, Gaël; Letourneur, Yves

2015-01-01

A wide investigation was conducted into the main organic matter (OM) sources supporting coral reef trophic networks in the lagoon of New Caledonia. Sampling included different reef locations (fringing, intermediate and barrier reef), different associated ecosystems (mangroves and seagrass beds) and rivers. In total, 30 taxa of macrophytes, plus pools of particulate and sedimentary OM (POM and SOM) were sampled. Isotopic signatures (C and N) of each OM sources was characterized and the composition of OM pools assessed. In addition, spatial and seasonal variations of reef OM sources were examined. Mangroves isotopic signatures were the most C-depleted (-30.17 ± 0.41 ‰) and seagrass signatures were the most C-enriched (-4.36 ± 0.72 ‰). Trichodesmium spp. had the most N-depleted signatures (-0.14 ± 0.03 ‰) whereas mangroves had the most N-enriched signatures (6.47 ± 0.41 ‰). The composition of POM and SOM varied along a coast-to-barrier reef gradient. River POM and marine POM contributed equally to coastal POM, whereas marine POM represented 90% of the POM on barrier reefs, compared to 10% river POM. The relative importance of river POM, marine POM and mangroves to the SOM pool decreased from fringing to barrier reefs. Conversely, the relative importance of seagrass, Trichodesmium spp. and macroalgae increased along this gradient. Overall, spatial fluctuations in POM and SOM were much greater than in primary producers. Seasonal fluctuations were low for all OM sources. Our results demonstrated that a large variety of OM sources sustain coral reefs, varying in their origin, composition and role and suggest that δ13C was a more useful fingerprint than δ15N in this endeavour. This study also suggested substantial OM exchanges and trophic connections between coral reefs and surrounding ecosystems. Finally, the importance of accounting for environmental characteristics at small temporal and spatial scales before drawing general patterns is highlighted. PMID:26134985

Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, Central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Albright, R.; Langdon, C.; Anthony, K. R. N.

2013-05-01

Ocean acidification is projected to shift coral reefs from a state of net accretion to one of net dissolution this century. Presently, our ability to predict global-scale changes to coral reef calcification is limited by insufficient data relating seawater carbonate chemistry parameters to in situ rates of reef calcification. Here, we investigate natural trends in carbonate chemistry of the Davies Reef flat in the central Great Barrier Reef on diel and seasonal timescales and relate these trends to benthic carbon fluxes by quantifying net ecosystem calcification (nec) and net community production (ncp). Results show that seawater carbonate chemistry of the Davies Reef flat is highly variable over both diel and seasonal timescales. pH (total scale) ranged from 7.92 to 8.17, pCO2 ranged from 272 to 542 μatm, and aragonite saturation state (Ωarag) ranged from 2.9 to 4.1. Diel cycles in carbonate chemistry were primarily driven by ncp, and warming explained 35% and 47% of the seasonal shifts in pCO2 and pH, respectively. Daytime ncp averaged 36 ± 19 mmol C m-2 h-1 in summer and 33 ± 13 mmol C m-2 h-1 in winter; nighttime ncp averaged -22 ± 20 and -7 ± 6 mmol C m-2 h-1 in summer and winter, respectively. Daytime nec averaged 11 ± 4 mmol CaCO3 m-2 h-1 in summer and 8 ± 3 mmol CaCO3 m-2 h-1 in winter, whereas nighttime nec averaged 2 ± 4 mmol and -1 ± 3 mmol CaCO3 m-2 h-1 in summer and winter, respectively. Net ecosystem calcification was positively correlated with Ωarag for both seasons. Linear correlations of nec and Ωarag indicate that the Davies Reef flat may transition from a state of net calcification to net dissolution at Ωarag values of 3.4 in summer and 3.2 in winter. Diel trends in Ωarag indicate that the reef flat is currently below this calcification threshold 29.6% of the time in summer and 14.1% of the time in winter.

Ecological impacts and management implications of reef walking on a tropical reef flat community.

PubMed

Williamson, Jane E; Byrnes, Evan E; Clark, Jennalee A; Connolly, David M; Schiller, Sabine E; Thompson, Jessica A; Tosetto, Louise; Martinelli, Julieta C; Raoult, Vincent

2017-01-30

Continued growth of tourism has led to concerns about direct and indirect impacts on the ecology of coral reefs and ultimate sustainability of these environments under such pressure. This research assessed impacts of reef walking by tourists on a relatively pristine reef flat community associated with an 'ecoresort' on the Great Barrier Reef, Australia. Heavily walked areas had lower abundances of live hard coral but greater amounts of dead coral and sediment. Abundances of macroalgae were not affected between sites. Coral-associated butterflyfish were less abundant and less diverse in more trampled sites. A manipulative experiment showed handling holothurians on reef walks had lasting negative impacts. This is the first study to show potential impacts of such handling on holothurians. Ecological impacts of reef walking are weighed against sociocultural benefits of a first hand experience in nature. Copyright © 2016 Elsevier Ltd. All rights reserved.

Human impacts on large benthic foraminifers near a densely populated area of Majuro Atoll, Marshall Islands.

PubMed

Osawa, Yoko; Fujita, Kazuhiko; Umezawa, Yu; Kayanne, Hajime; Ide, Yoichi; Nagaoka, Tatsutoshi; Miyajima, Toshihiro; Yamano, Hiroya

2010-08-01

Human impacts on sand-producing, large benthic foraminifers were investigated on ocean reef flats at the northeast Majuro Atoll, Marshall Islands, along a human population gradient. The densities of dominant foraminifers Calcarina and Amphistegina declined with distance from densely populated islands. Macrophyte composition on ocean reef flats differed between locations near sparsely or densely populated islands. Nutrient concentrations in reef-flat seawater and groundwater were high near or on densely populated islands. delta(15)N values in macroalgal tissues indicated that macroalgae in nearshore lagoons assimilate wastewater-derived nitrogen, whereas those on nearshore ocean reef flats assimilate nitrogen from other sources. These results suggest that increases in the human population result in high nutrient loading in groundwater and possibly into nearshore waters. High nutrient inputs into ambient seawater may have both direct and indirect negative effects on sand-producing foraminifers through habitat changes and/or the collapse of algal symbiosis. Copyright 2010 Elsevier Ltd. All rights reserved.

Stratigraphy and evolution of emerged Pleistocene reefs at the Red Sea coast of Sudan

NASA Astrophysics Data System (ADS)

Hamed, Basher; Bussert, Robert; Dominik, Wilhelm

2016-02-01

Emerged Pleistocene coral reefs constitute a prominent landform along the Red Sea coast of Sudan. They are well exposed with a thickness of up to 12 m and extend over a width of about 3 km parallel to the coastline. Four major reef units that represent different reef zones are distinguished. Unit 1 is located directly at the coastline and is assigned to the rock-reef rim, while unit 2 represents the reef-front zone. Unit 3 is attributed to the reef-flat zone and unit 4 to the back-reef zone. The stratigraphic position and age of the four units respectively the facies zones are based on field relationships and δ18O analysis. Results of δ18O analysis of coral, gastropod and bivalve samples were correlated to previous age dating of correlative reefs in Sudan and other parts of the Red Sea region. Estimation of reef ages was mainly based on δ18O values of the reef-front zone (unit 2) and the observed sedimentary succession of the reefs. δ18O values of two Porites coral samples from the reef-front zone strongly suggest equivalent ages of 120 and 122 ka that correspond to marine isotope stage MIS 5.5. Based on δ18O values and the field relationship to the reef-front zone, ages of reef-flat zone (unit 3) and back-reef zone (unit 4) could be assigned to MIS 9 and MIS 7 respectively. MIS 5.1 is suggested for the reef-rock rim (unit 1). The relationship of the reef zones to individual MIS might be explained by the predominance of a specific zone during a certain stage, while other facies were less well developed and/or later eroded by wave action. The reef unit most distal from the recent coastline formed during interglacial stage MIS 7, while former studies assign this unit to interglacial stage MIS 9. Unique flourishing, high diversity and excellent preservation of corals in the back-reef unit of MIS 7 reflect growth in troughs landward of the oldest reef-flat formed during previous interglacial stage MIS 9.

The Power of Three: Coral Reefs, Seagrasses and Mangroves Protect Coastal Regions and Increase Their Resilience.

PubMed

Guannel, Greg; Arkema, Katie; Ruggiero, Peter; Verutes, Gregory

2016-01-01

Natural habitats have the ability to protect coastal communities against the impacts of waves and storms, yet it is unclear how different habitats complement each other to reduce those impacts. Here, we investigate the individual and combined coastal protection services supplied by live corals on reefs, seagrass meadows, and mangrove forests during both non-storm and storm conditions, and under present and future sea-level conditions. Using idealized profiles of fringing and barrier reefs, we quantify the services supplied by these habitats using various metrics of inundation and erosion. We find that, together, live corals, seagrasses, and mangroves supply more protection services than any individual habitat or any combination of two habitats. Specifically, we find that, while mangroves are the most effective at protecting the coast under non-storm and storm conditions, live corals and seagrasses also moderate the impact of waves and storms, thereby further reducing the vulnerability of coastal regions. Also, in addition to structural differences, the amount of service supplied by habitats in our analysis is highly dependent on the geomorphic setting, habitat location and forcing conditions: live corals in the fringing reef profile supply more protection services than seagrasses; seagrasses in the barrier reef profile supply more protection services than live corals; and seagrasses, in our simulations, can even compensate for the long-term degradation of the barrier reef. Results of this study demonstrate the importance of taking integrated and place-based approaches when quantifying and managing for the coastal protection services supplied by ecosystems.

The Power of Three: Coral Reefs, Seagrasses and Mangroves Protect Coastal Regions and Increase Their Resilience

PubMed Central

Guannel, Greg; Arkema, Katie; Ruggiero, Peter; Verutes, Gregory

2016-01-01

Natural habitats have the ability to protect coastal communities against the impacts of waves and storms, yet it is unclear how different habitats complement each other to reduce those impacts. Here, we investigate the individual and combined coastal protection services supplied by live corals on reefs, seagrass meadows, and mangrove forests during both non-storm and storm conditions, and under present and future sea-level conditions. Using idealized profiles of fringing and barrier reefs, we quantify the services supplied by these habitats using various metrics of inundation and erosion. We find that, together, live corals, seagrasses, and mangroves supply more protection services than any individual habitat or any combination of two habitats. Specifically, we find that, while mangroves are the most effective at protecting the coast under non-storm and storm conditions, live corals and seagrasses also moderate the impact of waves and storms, thereby further reducing the vulnerability of coastal regions. Also, in addition to structural differences, the amount of service supplied by habitats in our analysis is highly dependent on the geomorphic setting, habitat location and forcing conditions: live corals in the fringing reef profile supply more protection services than seagrasses; seagrasses in the barrier reef profile supply more protection services than live corals; and seagrasses, in our simulations, can even compensate for the long-term degradation of the barrier reef. Results of this study demonstrate the importance of taking integrated and place-based approaches when quantifying and managing for the coastal protection services supplied by ecosystems. PMID:27409584

Earth observations taken during STS-8

NASA Image and Video Library

2009-06-25

STS008-32-748 (30 Aug-5 Sept 1983) --- Bora-Bora, with its wide-fringing reef, stands out in the center of this photographed, taken over the Society Island chain from the Earth-orbiting Space Shuttle Challenger on its third spaceflight. In the upper left corner are the islands of Raiatea and Tahaa. The ancient volcano islands are very slowly sinking into the oceanic crust, while coral growth maintains a reef platform.

Evidence from aerial photography of structural loss of coral reefs at Barbados, West Indies

NASA Astrophysics Data System (ADS)

Lewis, J.

2002-04-01

In response to concerns about widespread degradation of coral reefs at Barbados, West Indies, over the past two decades, maps and planimetric areas of 20 fringing coral reefs were estimated from enlargements of aerial photographs of the island, using geographic information system analysis. There were statistically significant reductions in reef areas over a 40-year period from 1950 to 1991. Areal losses exceeding measurement and boundary interpretation errors of 10% were detected on eight of the 20 reefs. Ground validation carried out by divers on six of the reefs confirmed physical losses of reef structures and accumulation of rubble and sand substrata at sites where substantial planimetric area loss was detected on aerial photographs. Structural losses occurred along the "spur and groove" system of the reef-seaward edge, within deep channels or breaches in the reef front, and along the flanks or ends of reefs. The location and nature of the observed losses suggest that storm damage and seasonal alterations in beach morphology are the two most important factors contributing to geomorphological structural loss of the reefs.

Impact of sea-level rise on cross-shore sediment transport on fetch-limited barrier reef island beaches under modal and cyclonic conditions.

PubMed

Baldock, T E; Golshani, A; Atkinson, A; Shimamoto, T; Wu, S; Callaghan, D P; Mumby, P J

2015-08-15

A one-dimensional wave model is combined with an analytical sediment transport model to investigate the likely influence of sea-level rise on net cross-shore sediment transport on fetch-limited barrier reef and lagoon island beaches. The modelling considers if changes in the nearshore wave height and wave period in the lagoon induced by different water levels over the reef flat are likely to lead to net offshore or onshore movement of sediment. The results indicate that the effects of SLR on net sediment movement are highly variable and controlled by the bathymetry of the reef and lagoon. A significant range of reef-lagoon bathymetry, and notably shallow and narrow reefs, appears to lead hydrodynamic conditions and beaches that are likely to be stable or even accrete under SLR. Loss of reef structural complexity, particularly on the reef flat, increases the chance of sediment transport away from beaches and offshore. Copyright © 2015 Elsevier Ltd. All rights reserved.

Anthropogenic biogeochemical impacts on coral reefs in the Pacific Islands—An overview

NASA Astrophysics Data System (ADS)

Morrison, R. J.; Denton, G. R. W.; Bale Tamata, U.; Grignon, J.

2013-11-01

Coral reefs dominate the coastal environment in many Pacific Islands, being present as atolls, coral platforms, barrier and fringing reefs. With ever increasing populations and migration of people to the coast, the anthropogenic impacts on these reefs have increased dramatically in the last 30 years. While research on these impacts has been limited, some important progress has been made. This paper reviews some of the completed studies, with outcomes from American Samoa, Fiji, French Polynesia, Guam, Saipan, New Caledonia and Tonga presented. These studies indicate that the most significant impacts have been found in locations close to major urban centres or industrial and mining activities. The extent of impact varies from place to place with minimal impacts in the more isolated and less industrialised communities. Common anthropogenic impacts are contamination caused by inadequate sewage treatment, erosion from adjacent agricultural and urban expansion activities, poor waste management, eutrophication, inefficient and/or inappropriate pesticide use and hydrocarbons use, storage and management. The outcomes include contaminated sediments (trace metals, pesticides, PCBs, hydrocarbons) with some impacts on resident biota. In some instances, the edible quality of local fisheries resources has been significantly compromised.Even in locations with small populations, increasing populations and poor economic conditions have resulted in noticeable effects on the adjacent fringing reefs, including dramatic algal proliferation and declines in fish numbers resulting from increasing nutrient discharges and increased herbivore fish catches. Recovery measures including fishing bans and alternative fishing practices have been implemented to address these issues in some areas.

Status and conservation of coral reefs in Costa Rica.

PubMed

Cortés, Jorge; Jiménez, Carlos E; Fonseca, Ana C; Alvarado, Juan José

2010-05-01

Costa Rica has coral communities and reefs on the Caribbean coast and on the Pacific along the coast and off-shore islands. The Southern section of the Caribbean coast has fringing and patch reefs, carbonate banks, and an incipient algal ridge. The Pacific coast has coral communities, reefs and isolated coral colonies. Coral reefs have been seriously impacted in the last 30 years, mainly by sediments (Caribbean coast and some Pacific reefs) and by El Niño warming events (both coasts). Monitoring is being carried out at three sites on each coast. Both coasts suffered significant reductions in live coral cover in the 1980's, but coral cover is now increasing in most sites. The government of Costa Rica is aware of the importance of coral reefs and marine environments in general, and in recent years decrees have been implemented (or are in the process of approval) to protect them, but limited resources endanger their proper management and conservation, including proper outreach to reef users and the general public.

Projecting of wave height and water level on reef-lined coasts due to intensified tropical cyclones and sea level rise in Palau to 2100

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kurihara, Haruko; Golbuu, Yimnang

2018-03-01

Tropical cyclones (TCs) and sea level rise (SLR) cause major problems including beach erosion, saltwater intrusion into groundwater, and damage to infrastructure in coastal areas. The magnitude and extent of damage is predicted to increase as a consequence of future climate change and local factors. Upward reef growth has attracted attention for its role as a natural breakwater, reducing the risks of natural disasters to coastal communities. However, projections of change in the risk to coastal reefs under conditions of intensified TCs and SLR are poorly quantified. In this study we projected the wave height and water level on Melekeok reef in the Palau Islands by 2100, based on wave simulations under intensified TCs (significant wave height at the outer ocean: SWHo = 8.7-11.0 m; significant wave period at the outer ocean: SWPo = 13-15 s) and SLR (0.24-0.98 m). To understand effects of upward reef growth on the reduction of the wave height and water level, the simulation was conducted for two reef condition scenarios: a degraded reef and a healthy reef. Moreover, analyses of reef growth based on a drilled core provided an assessment of the coral community and rate of reef production necessary to reduce the risk from TCs and SLR on the coastal areas. According to our calculations under intensified TCs and SLR by 2100, significant wave heights at the reef flat (SWHr) will increase from 1.05-1.24 m at present to 2.14 m if reefs are degraded. Similarly, by 2100 the water level at the shoreline (WLs) will increase from 0.86-2.10 m at present to 1.19-3.45 m if reefs are degraded. These predicted changes will probably cause beach erosion, saltwater intrusion into groundwater, and damage to infrastructure, because the coastal village is located at ˜ 3 m above the present mean sea level. These findings imply that even if the SWHr is decreased by only 0.1 m by upward reef growth, it will probably reduce the risks of costal damages. Our results showed that a healthy reef will reduce a maximum of 0.44 m of the SWHr. According to analysis of drilled core, corymbose Acropora corals will be key to reducing the risks, and 2.6-5.8 kg CaCO3 m-2 yr-1, equivalent to > 8 % of coral cover, will be required to keep a healthy reef by 2100. This study highlights that the maintaining reef growth (as a function of coral cover) in the future is effective in reducing the risk of coastal damage arising from wave action. Although the present study focuses on Melekeok fringing reef, many coral reefs are in the same situation under conditions of intensified TCs and SLR, and therefore the results of this study are applicable to other reefs. These researches are critical in guiding policy development directed at disaster prevention for small island nations and for developing and developed countries.

Identification and classification of very low frequency waves on a coral reef flat

USGS Publications Warehouse

Gawehn, Matthijs; van Dongeran, Ap; van Rooijen, Arnold; Storlazzi, Curt; Cheriton, Olivia; Reniers, Ad

2016-01-01

Very low frequency (VLF, 0.001–0.005 Hz) waves are important drivers of flooding of low-lying coral reef-islands. In particular, VLF wave resonance is known to drive large wave runup and subsequent overwash. Using a 5 month data set of water levels and waves collected along a cross-reef transect on Roi-Namur Island in the Republic of the Marshall Islands, the observed VLF motions were categorized into four different classes: (1) resonant, (2) (nonresonant) standing, (3) progressive-growing, and (4) progressive-dissipative waves. Each VLF class is set by the reef flat water depth and, in the case of resonance, the incident-band offshore wave period. Using an improved method to identify VLF wave resonance, we find that VLF wave resonance caused prolonged (∼0.5–6.0 h), large-amplitude water surface oscillations at the inner reef flat ranging in wave height from 0.14 to 0.83 m. It was induced by relatively long-period, grouped, incident-band waves, and occurred under both storm and nonstorm conditions. Moreover, observed resonant VLF waves had nonlinear, bore-like wave shapes, which likely have a larger impact on the shoreline than regular, sinusoidal waveforms. As an alternative technique to the commonly used Fast Fourier Transformation, we propose the Hilbert-Huang Transformation that is more computationally expensive but can capture the wave shape more accurately. This research demonstrates that understanding VLF waves on reef flats is important for evaluating coastal flooding hazards.

Identification and classification of very low frequency waves on a coral reef flat

NASA Astrophysics Data System (ADS)

Gawehn, Matthijs; van Dongeren, Ap; van Rooijen, Arnold; Storlazzi, Curt D.; Cheriton, Olivia M.; Reniers, Ad

2016-10-01

Very low frequency (VLF, 0.001-0.005 Hz) waves are important drivers of flooding of low-lying coral reef-islands. In particular, VLF wave resonance is known to drive large wave runup and subsequent overwash. Using a 5 month data set of water levels and waves collected along a cross-reef transect on Roi-Namur Island in the Republic of the Marshall Islands, the observed VLF motions were categorized into four different classes: (1) resonant, (2) (nonresonant) standing, (3) progressive-growing, and (4) progressive-dissipative waves. Each VLF class is set by the reef flat water depth and, in the case of resonance, the incident-band offshore wave period. Using an improved method to identify VLF wave resonance, we find that VLF wave resonance caused prolonged (˜0.5-6.0 h), large-amplitude water surface oscillations at the inner reef flat ranging in wave height from 0.14 to 0.83 m. It was induced by relatively long-period, grouped, incident-band waves, and occurred under both storm and nonstorm conditions. Moreover, observed resonant VLF waves had nonlinear, bore-like wave shapes, which likely have a larger impact on the shoreline than regular, sinusoidal waveforms. As an alternative technique to the commonly used Fast Fourier Transformation, we propose the Hilbert-Huang Transformation that is more computationally expensive but can capture the wave shape more accurately. This research demonstrates that understanding VLF waves on reef flats is important for evaluating coastal flooding hazards.

Exploring Mesophotic Depths Off North Philippine Sea: Coral Reefs on the Benham Bank Seamount

NASA Astrophysics Data System (ADS)

Nacorda, H. M. E.; Dizon, R. M.; Meñez, L. A. B.; Nañola, C. L., Jr.; Hernandez, H. B.; Quimpo, F. A. T. R.; De Jesus, D. O.; Nacorda, J. O. O.; Tingson, K. N.; Roa-Chio, P. B. L.; Pardo, K. C. E.; Licuanan, W. R. Y.; Aliño, P. M.

2016-02-01

We conducted observational surveys of coral reef biodiversity at <60 m on the summit of the Benham Bank Seamount off North Philippine Sea. The reefs were found with excellent cover (75 to 100%) of mostly tiered, thick, rigid and foliose plate-forming Porites rus. Over 60 species of bony and cartilaginous fish were recorded; their estimated biomass ranged from 17 to 102 mt km-2. Four species of the green algae Halimeda dominated the reef-associated macroalgae, some of which were epiphytic. The prominent coral-attached sponges had arborescent growth form but irregular forms also occurred. The coarse biogenic surface sediments harbored mostly aerobic macroinfauna. These results comprise the first account of the biodiversity of an offshore mesophotic coral reef seamount. Although its diversity appears less than the shallower fringing reefs of the Philippines' Pacific Seaboard, the dynamic environment remains important to fisheries.

Microbial communities in the reef water at Kham Island, lower Gulf of Thailand.

PubMed

Somboonna, Naraporn; Wilantho, Alisa; Monanunsap, Somchai; Chavanich, Suchana; Tangphatsornruang, Sithichoke; Tongsima, Sissades

2017-01-01

Coral reefs are among the most biodiverse habitats on Earth, but knowledge of their associated marinemicrobiome remains limited. To increase the understanding of the coral reef ecosystem in the lower Gulf of Thailand, this study utilized 16S and 18S rRNA gene-based pyrosequencing to identify the prokaryotic and eukaryotic microbiota present in the reef water at Kham Island, Trat province, Thailand (N6.97 E100.86). The obtained result was then compared with the published microbiota from different coral reef water and marine sites. The coral reefs at Kham Island are of the fringe type. The reefs remain preserved and abundant. The community similarity indices (i.e., Lennon similarity index, Yue & Clayton similarity index) indicated that the prokaryotic composition of Kham was closely related to that of Kra, another fringing reef site in the lower Gulf of Thailand, followed by coral reef water microbiota at GS048b (Cooks Bay, Fr. Polynesia), Palmyra (Northern Line Islands, United States) and GS108b (Coccos Keeling, Australia), respectively. Additionally, the microbial eukaryotic populations at Kham was analyzed and compared with the available database at Kra. Both eukaryotic microbiota, in summer and winter seasons, were correlated. An abundance of Dinophysis acuminata was noted in the summer season, in accordance with its reported cause of diarrhoeatic shellfish outbreak in the summer season elsewhere. The slightly lower biodiversity in Kham than at Kra might reflect the partly habitat difference due to coastal anthropogenic activities and minor water circulation, as Kham locates close to the mainland and is surrounded by islands (e.g., Chang and Kut islands). The global marine microbiota comparison suggested relatively similar microbial structures among coral sites irrespective of geographical location, supporting the importance of coral-associated marine microbiomes, and Spearman's correlation analysis between community membership and factors of shore distance and seawater temperature indicated potential correlation of these factors ( p -values < 0.05) with Kham, Kra, and some other coral and coastal sites. Together, this study provided the second marine microbial database for the coral reef of the lower Gulf of Thailand, and a comparison of the coral-associated marine microbial diversity among global ocean sites.

Three-beam interferogram analysis method for surface flatness testing of glass plates and wedges

NASA Astrophysics Data System (ADS)

Sunderland, Zofia; Patorski, Krzysztof

2015-09-01

When testing transparent plates with high quality flat surfaces and a small angle between them the three-beam interference phenomenon is observed. Since the reference beam and the object beams reflected from both the front and back surface of a sample are detected, the recorded intensity distribution may be regarded as a sum of three fringe patterns. Images of that type cannot be succesfully analyzed with standard interferogram analysis methods. They contain, however, useful information on the tested plate surface flatness and its optical thickness variations. Several methods were elaborated to decode the plate parameters. Our technique represents a competitive solution which allows for retrieval of phase components of the three-beam interferogram. It requires recording two images: a three-beam interferogram and the two-beam one with the reference beam blocked. Mutually subtracting these images leads to the intensity distribution which, under some assumptions, provides access to the two component fringe sets which encode surfaces flatness. At various stages of processing we take advantage of nonlinear operations as well as single-frame interferogram analysis methods. Two-dimensional continuous wavelet transform (2D CWT) is used to separate a particular fringe family from the overall interferogram intensity distribution as well as to estimate the phase distribution from a pattern. We distinguish two processing paths depending on the relative density of fringe sets which is connected with geometry of a sample and optical setup. The proposed method is tested on simulated data.

Coral reef metabolism and carbon chemistry dynamics of a coral reef flat

NASA Astrophysics Data System (ADS)

Albright, Rebecca; Benthuysen, Jessica; Cantin, Neal; Caldeira, Ken; Anthony, Ken

2015-05-01

Global carbon emissions continue to acidify the oceans, motivating growing concern for the ability of coral reefs to maintain net positive calcification rates. Efforts to develop robust relationships between coral reef calcification and carbonate parameters such as aragonite saturation state (Ωarag) aim to facilitate meaningful predictions of how reef calcification will change in the face of ocean acidification. Here we investigate natural trends in carbonate chemistry of a coral reef flat over diel cycles and relate these trends to benthic carbon fluxes by quantifying net community calcification and net community production. We find that, despite an apparent dependence of calcification on Ωarag seen in a simple pairwise relationship, if the dependence of net calcification on net photosynthesis is accounted for, knowing Ωarag does not add substantial explanatory value. This suggests that, over short time scales, the control of Ωarag on net calcification is weak relative to factors governing net photosynthesis.

Pleistocene reefs of the Egyptian Red Sea: environmental change and community persistence

PubMed Central

2017-01-01

The fossil record of Red Sea fringing reefs provides an opportunity to study the history of coral-reef survival and recovery in the context of extreme environmental change. The Middle Pleistocene, the Late Pleistocene, and modern reefs represent three periods of reef growth separated by glacial low stands during which conditions became difficult for symbiotic reef fauna. Coral diversity and paleoenvironments of eight Middle and Late Pleistocene fossil terraces are described and characterized here. Pleistocene reef zones closely resemble reef zones of the modern Red Sea. All but one species identified from Middle and Late Pleistocene outcrops are also found on modern Red Sea reefs despite the possible extinction of most coral over two-thirds of the Red Sea basin during glacial low stands. Refugia in the Gulf of Aqaba and southern Red Sea may have allowed for the persistence of coral communities across glaciation events. Stability of coral communities across these extreme climate events indicates that even small populations of survivors can repopulate large areas given appropriate water conditions and time. PMID:28674659

Pleistocene reefs of the Egyptian Red Sea: environmental change and community persistence.

PubMed

Casazza, Lorraine R

2017-01-01

The fossil record of Red Sea fringing reefs provides an opportunity to study the history of coral-reef survival and recovery in the context of extreme environmental change. The Middle Pleistocene, the Late Pleistocene, and modern reefs represent three periods of reef growth separated by glacial low stands during which conditions became difficult for symbiotic reef fauna. Coral diversity and paleoenvironments of eight Middle and Late Pleistocene fossil terraces are described and characterized here. Pleistocene reef zones closely resemble reef zones of the modern Red Sea. All but one species identified from Middle and Late Pleistocene outcrops are also found on modern Red Sea reefs despite the possible extinction of most coral over two-thirds of the Red Sea basin during glacial low stands. Refugia in the Gulf of Aqaba and southern Red Sea may have allowed for the persistence of coral communities across glaciation events. Stability of coral communities across these extreme climate events indicates that even small populations of survivors can repopulate large areas given appropriate water conditions and time.

Health of the coral reefs at the US Navy Base, Guantánamo Bay, Cuba: a preliminary report based on isotopic records from gorgonians.

PubMed

Risk, Michael J; Burchell, Meghan; Brunton, Dalston A; McCord, Michael R

2014-06-15

Specimens of the gorgonian Plexaura homomalla were sampled from several areas along the fringing reefs fronting the United States Naval Base at Guantánamo Bay, Cuba. Sample coverage extended from apparently healthy reefs in oceanic waters to declining reefs located in the plume of the drainage from upper parts of Guantánamo Bay. Tentacle tips were excised, and trunk sections were cut and polished. Stable isotope ratios of nitrogen (δ(15)N) and carbon indicate a strong correlation of reef health with proximity to the plume of the river. Of all the worldwide cases in which land-based sources of pollution have impacted reefs, this one may well be the most intractable. The US Navy has jurisdiction over the reefs, with the obligation to protect them, yet the threat comes down the river from Cuba. Copyright © 2014 Elsevier Ltd. All rights reserved.

Spatial and temporal variation in reef-scale carbonate storage of large benthic foraminifera: a case study on One Tree Reef

NASA Astrophysics Data System (ADS)

Doo, Steve S.; Hamylton, Sarah; Finfer, Joshua; Byrne, Maria

2017-03-01

Large benthic foraminifera (LBFs) are a vital component of coral reef carbonate production, often overlooked due to their small size. These super-abundant calcifiers are crucial to reef calcification by generation of lagoon and beach sands. Reef-scale carbonate production by LBFs is not well understood, and seasonal fluctuations in this important process are largely unquantified. The biomass of five LBF species in their algal flat habitat was quantified in the austral winter (July 2013), spring (October 2013), and summer (February 2014) at One Tree Reef. WorldView-2 satellite images were used to characterize and create LBF habitat maps based on ground-referenced photographs of algal cover. Habitat maps and LBF biomass measurements were combined to estimate carbonate storage across the entire reef flat. Total carbonate storage of LBFs on the reef flat ranged from 270 tonnes (winter) to 380 tonnes (summer). Satellite images indicate that the habitat area used by LBFs ranged from 0.6 (winter) to 0.71 km2 (spring) of a total possible area of 0.96 km2. LBF biomass was highest in the winter when algal habitat area was lowest, but total carbonate storage was the highest in the summer, when algal habitat area was intermediate. Our data suggest that biomass measurements alone do not capture total abundance of LBF populations (carbonate storage), as the area of available habitat is variable. These results suggest LBF carbonate production studies that measure biomass in discrete locations and single time points fail to capture accurate reef-scale production by not incorporating estimates of the associated algal habitat. Reef-scale measurements in this study can be incorporated into carbonate production models to determine the role of LBFs in sedimentary landforms (lagoons, beaches, etc.). Based on previous models of entire reef metabolism, our estimates indicate that LBFs contribute approximately 3.9-5.4% of reef carbonate budgets, a previously underappreciated carbon sink.

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies.

PubMed

Kline, David I; Teneva, Lida; Hauri, Claudine; Schneider, Kenneth; Miard, Thomas; Chai, Aaron; Marker, Malcolm; Dunbar, Rob; Caldeira, Ken; Lazar, Boaz; Rivlin, Tanya; Mitchell, Brian Gregory; Dove, Sophie; Hoegh-Guldberg, Ove

2015-01-01

Understanding the temporal dynamics of present thermal and pH exposure on coral reefs is crucial for elucidating reef response to future global change. Diel ranges in temperature and carbonate chemistry parameters coupled with seasonal changes in the mean conditions define periods during the year when a reef habitat is exposed to anomalous thermal and/or pH exposure. Anomalous conditions are defined as values that exceed an empirically estimated threshold for each variable. We present a 200-day time series from June through December 2010 of carbonate chemistry and environmental parameters measured on the Heron Island reef flat. These data reveal that aragonite saturation state, pH, and pCO2 were primarily modulated by biologically-driven changes in dissolved organic carbon (DIC) and total alkalinity (TA), rather than salinity and temperature. The largest diel temperature ranges occurred in austral spring, in October (1.5 - 6.6°C) and lowest diel ranges (0.9 - 3.2°C) were observed in July, at the peak of winter. We observed large diel total pH variability, with a maximum range of 7.7 - 8.5 total pH units, with minimum diel average pH values occurring during spring and maximum during fall. As with many other reefs, the nighttime pH minima on the reef flat were far lower than pH values predicted for the open ocean by 2100. DIC and TA both increased from June (end of Fall) to December (end of Spring). Using this high-resolution dataset, we developed exposure metrics of pH and temperature individually for intensity, duration, and severity of low pH and high temperature events, as well as a combined metric. Periods of anomalous temperature and pH exposure were asynchronous on the Heron Island reef flat, which underlines the importance of understanding the dynamics of co-occurrence of multiple stressors on coastal ecosystems.

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies

PubMed Central

Kline, David I.; Teneva, Lida; Hauri, Claudine; Schneider, Kenneth; Miard, Thomas; Chai, Aaron; Marker, Malcolm; Dunbar, Rob; Caldeira, Ken; Lazar, Boaz; Rivlin, Tanya; Mitchell, Brian Gregory; Dove, Sophie; Hoegh-Guldberg, Ove

2015-01-01

Understanding the temporal dynamics of present thermal and pH exposure on coral reefs is crucial for elucidating reef response to future global change. Diel ranges in temperature and carbonate chemistry parameters coupled with seasonal changes in the mean conditions define periods during the year when a reef habitat is exposed to anomalous thermal and/or pH exposure. Anomalous conditions are defined as values that exceed an empirically estimated threshold for each variable. We present a 200-day time series from June through December 2010 of carbonate chemistry and environmental parameters measured on the Heron Island reef flat. These data reveal that aragonite saturation state, pH, and pCO2 were primarily modulated by biologically-driven changes in dissolved organic carbon (DIC) and total alkalinity (TA), rather than salinity and temperature. The largest diel temperature ranges occurred in austral spring, in October (1.5 – 6.6°C) and lowest diel ranges (0.9 – 3.2°C) were observed in July, at the peak of winter. We observed large diel total pH variability, with a maximum range of 7.7 – 8.5 total pH units, with minimum diel average pH values occurring during spring and maximum during fall. As with many other reefs, the nighttime pH minima on the reef flat were far lower than pH values predicted for the open ocean by 2100. DIC and TA both increased from June (end of Fall) to December (end of Spring). Using this high-resolution dataset, we developed exposure metrics of pH and temperature individually for intensity, duration, and severity of low pH and high temperature events, as well as a combined metric. Periods of anomalous temperature and pH exposure were asynchronous on the Heron Island reef flat, which underlines the importance of understanding the dynamics of co-occurrence of multiple stressors on coastal ecosystems. PMID:26039687

Real-time vibration measurement by a spatial phase-shifting technique with a tilted holographic interferogram.

PubMed

Nakadate, S; Isshiki, M

1997-01-01

Real-time vibration measurement by a tilted holographic interferogram is presented that utilizes the real-time digital fringe processor of a video signal. Three intensity data sampled at every one-third of the fringe spacing of the tilted fringes are used to calculate the modulation term of the fringe that is a function of a vibration amplitude. A three-dimensional lookup table performs the calculation in a TV repetition rate to give a new fringe profile that contours the vibration amplitude. Vibration modes at the resonant frequencies of a flat speaker were displayed on a monitor as changing the exciting frequency of vibration.

Resilience of a High Latitude Red Sea Frining Corals Exposed to Extreme Temperatures

NASA Astrophysics Data System (ADS)

Moustafa, M.; Moustafa, M. S.; Moustafa, S.; Moustafa, Z. D.

2013-05-01

Since 2004, multi-year study set out to establish linkages between fringing coral reefs in the northern Gulf of Suez, Red Sea, and local weather. Insight into local meteorological processes may provide a better understanding of the direct influence weather has on a fringing coral reef. To establish trends, seawater temperature and meteorological record were collected at a small fringing coral reef (Zaki's Reef), located near Ein Sokhna, Egypt (29.5oN & 32.4oE). Monitoring air and water temperature provides evidence of seasonality and interannual variability and may reveal correlations between reef health and climate conditions in this region. Prior to this study, there were no known long-term studies investigating coral reefs in this region. Approximately 35 coral taxa are known to survive the extreme temperature and salinity regime found here, yet only six corals compose 94% of coral cover on Zaki's Reef. Dominant corals include: Acropora humilis, A. microclados, A. hemprichii, Litophyton arboretum, Stylophora pistillata, Porites columna, and P. plantulata. Seawater temperatures were collected at 30 minutes intervals at 5 locations. Seawater temperature data indicate that corals experience 4-6.5oC daily temperature variations and seasonal variations that exceed 29oC. Air temperatures were collected just landward of the reef were compared to Hurghada and Ismailia 400 and 200 km south and north of the study site, respectively. Time series analysis results indicate that air temperature dominant frequencies are half-daily, daily, and yearly cycles, while water temperatures show yearly cycles. A comparison of air temperature with neighboring locations indicates that air temperatures at Ein Sokhna ranged between near 0o C to an excess of 55o C, yet, daily means for Ein Sokhna and Hurghada were very similar (24.2o C and. 25.2o C, respectively). Maximum daily air temperatures at the study site exceeded maximum air temperature at Hurghada (400 km south) by almost 7o C, while minimum daily means at Ein Sokhna were almost equal to those at Ismailia (200 km north). These trends were opposite to what was expected considering each stations geographical locations. The unexpected temperature trends, the daily/half daily dominant frequencies, and the short distance between the mountain range and Zaki's Reef vs. Hurghada (0.5 vs. 35 km), prompted us to hypothesize that a Foehn wind may be responsible for the high air temperatures observed at Ein Sokhna. We applied NOAA's HYSPLIT model to explore local circulation patterns, which suggest that the high mountain range blocks the year-round trade wind and forces it to climb up the western slope, where it loses moisture and reduces its temperature. As this cool, denser air reaches the mountain top, the air parcel starts rolling down the eastern slopes, which causes air temperature to rise and result in an increase in local air temperatures. These warmer than normal air temperatures measured here may aid in securing these northernmost reefs survival. Further scrutiny of the mechanisms by which area reefs are able to thrive extreme environmental conditions continues to be investigated.

Bathymetric distribution of foraminifera in Jamaican reef environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, R.E.; Liddell, W.D.

1985-02-01

Recent foraminifera inhabiting Jamaican north-coast fringing reefs display variations in distributional patterns that are related to bathymetry and reef morphology. Sediment samples containing foraminifera were collected along a profile that traversed the back reef (depth 1-2 m), fore-reef terrace (3-15 m), fore-reef escarpment (15-27 m), fore-reef slope (30-55 m), and upper deep fore reef (70 m). Approximately 150 species distributed among 80 genera were identified from the samples. Preliminary analyses indicate that diversity values (S, H') are lowest on the fore-reef terrace (79, 3.0, respectively), increase similarly in back-reef and fore-reef escarpment and slope settings (93, 3.4), and are highestmore » on the deep fore reef (109, 3.7). Larger groupings (suborders) exhibit distinct bathymetric trends with miliolids occurring more commonly in back-reef (comprising 51% of the fauna) than in fore-reef (28%) zones, whereas agglutinated and planktonic species occur more commonly in deeper reef (> 15 m, 9% and 4%, respectively) than in shallower reef zones (< 15 m, 3%, and 0.5%, respectively). Among the more common species Amphistegina gibbosa (Rotolina) is much more abundant in fore-reef (3%) environments, and Sorites marginalis (Miliolina) occurs almost exclusively in the back reef, where it comprises 5.5% of the fauna. Q-mode cluster analysis, involving all species collected, enabled the delineation of back-reef, shallow fore-reef, and deeper fore-reef biofacies, also indicating the potential utility of foraminiferal distributions in detailed paleoenvironment interpretations of ancient reef settings.« less

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship.

PubMed

Paxton, Avery B; Pickering, Emily A; Adler, Alyssa M; Taylor, J Christopher; Peterson, Charles H

2017-01-01

Structural complexity, a form of habitat heterogeneity, influences the structure and function of ecological communities, generally supporting increased species density, richness, and diversity. Recent research, however, suggests the most complex habitats may not harbor the highest density of individuals and number of species, especially in areas with elevated human influence. Understanding nuances in relationships between habitat heterogeneity and ecological communities is warranted to guide habitat-focused conservation and management efforts. We conducted fish and structural habitat surveys of thirty warm-temperate reefs on the southeastern US continental shelf to quantify how structural complexity influences fish communities. We found that intermediate complexity maximizes fish abundance on natural and artificial reefs, as well as species richness on natural reefs, challenging the current paradigm that abundance and other fish community metrics increase with increasing complexity. Naturally occurring rocky reefs of flat and complex morphologies supported equivalent abundance, biomass, species richness, and community composition of fishes. For flat and complex morphologies of rocky reefs to receive equal consideration as essential fish habitat (EFH), special attention should be given to detecting pavement type rocky reefs because their ephemeral nature makes them difficult to detect with typical seafloor mapping methods. Artificial reefs of intermediate complexity also maximized fish abundance, but human-made structures composed of low-lying concrete and metal ships differed in community types, with less complex, concrete structures supporting lower numbers of fishes classified largely as demersal species and metal ships protruding into the water column harboring higher numbers of fishes, including more pelagic species. Results of this study are essential to the process of evaluating habitat function provided by different types and shapes of reefs on the seafloor so that all EFH across a wide range of habitat complexity may be accurately identified and properly managed.

Lightweight Exoatmospheric Projectile (LEAP) Test Program. Environment Assessment

DTIC Science & Technology

1991-07-01

and Man-Made Environment Kwajalein Atoll is a coral reef containing approximately 100 islands surrounding the largest lagoon in the Nlorld. The Atoll is...entirely from the remains of marine organisms such as reef corals , coralline algae, foramnifera, and others. Soils are coarse, grain size, alkaline...Kwajalein Atoll include ocean reefs , lagoon reefs , lagoon floor and sand flats, harbors, piers, quarries, and sea grass beds. Several reef species are

Wave-optical evaluation of interference fringes and wavefront phase in a hard-x-ray beam totally reflected by mirror optics.

PubMed

Yamauchi, Kazuto; Yamamura, Kazuya; Mimura, Hidekazu; Sano, Yasuhisa; Saito, Akira; Endo, Katsuyoshi; Souvorov, Alexei; Yabashi, Makina; Tamasaku, Kenji; Ishikawa, Tetsuya; Mori, Yuzo

2005-11-10

The intensity flatness and wavefront shape in a coherent hard-x-ray beam totally reflected by flat mirrors that have surface bumps modeled by Gaussian functions were investigated by use of a wave-optical simulation code. Simulated results revealed the necessity for peak-to-valley height accuracy of better than 1 nm at a lateral resolution near 0.1 mm to remove high-contrast interference fringes and appreciable wavefront phase errors. Three mirrors that had different surface qualities were tested at the 1 km-long beam line at the SPring-8/Japan Synchrotron Radiation Research Institute. Interference fringes faded when the surface figure was corrected below the subnanometer level to a spatial resolution close to 0.1 mm, as indicated by the simulated results.

Seasonal monitoring of coral-algae interactions in fringing reefs of the Gulf of Aqaba, Northern Red Sea

NASA Astrophysics Data System (ADS)

Haas, A.; El-Zibdah, M.; Wild, C.

2010-03-01

This paper presents seasonal in situ monitoring data on benthic coverage and coral -algae interactions in high-latitude fringing reefs of the Northern Red Sea over a period of 19 months. More than 30% of all hermatypic corals were involved in interaction with benthic reef algae during winter compared to 17% during summer, but significant correlation between the occurrence of coral -algae interactions and monitored environmental factors such as temperature and inorganic nutrient availability was not detected. Between 5 and 10-m water depth, the macroalgae Caulerpa serrulata, Peyssonnelia capensis and filamentous turf algae represented almost 100% of the benthic algae involved in interaction with corals. Turf algae were most frequently (between 77 and 90% of all interactions) involved in interactions with hermatypic corals and caused most tissue damage to them. Maximum coral tissue loss of 0.75% day-1 was observed for Acropora-turf algae interaction during fall, while an equilibrium between both groups of organisms appeared during summer. Slow-growing massive corals were more resistant against negative algal influence than fast-growing branching corals. Branching corals of the genus Acropora partly exhibited a newly observed phenotypic plasticity mechanism, by development of a bulge towards the competing organism, when in interaction with algae. These findings may contribute to understand the dynamics of phase shifts in coral reefs by providing seasonally resolved in situ monitoring data on the abundance and the competitive dynamic of coral -algae interactions.

Late Quaternary Deformation and Relative Sea Level Changes in Southwest Luzon, Philippines Constrained from Emergent Coral Reef Terraces

NASA Astrophysics Data System (ADS)

Maxwell, K. V.; Ramos, N. T.; Tsutsumi, H.; Shen, C. C.

2017-12-01

Emergent coral reef terraces fringing the islands of Lubang and Cabra located offshore southwest Luzon Island, Philippines are studied to understand Late Quaternary deformation and relative sea level changes along the southern terminus of the Manila subduction zone. In both islands, the emergent coral reef platforms have two to three terrace steps with meter-scale terrace risers and often well preserved. We also observed varied elevations of emergent coral reef platforms in both localities. In the northwest portion of Lubang Island, we identified three terrace steps, which rise to about 5 m above mean sea level (amsl). Cabra Island is a coral island that is fringed by two to possibly three steps of emergent coral reef terraces rising up to 11.9 m amsl with TI measured at 3-6 m, TII: 7-8 m, and TIII: 11.9 m amsl. Age constraints are provided by Thorium-230 of fossil corals taken on terrace surfaces. Thorium-230 ages obtained from attached fossil coral samples yielded mid-Holocene ages of 5,121 ± 16 and 3,221 ± 10 years BP. Late Holocene ages of 76 ± 2, 153 ± 2, and 330 ± 3 years BP are meanwhile provided by coral boulders found on the surface of TI in Cabra Island. The two sets of Holocene ages provide interesting insights on relative sea level changes and uplift along the southern end of the Manila Trench. The mid-Holocene ages possibly account for accumulated uplift in southwest Luzon while the late Holocene ages could provide evidence for extreme wave events that occurred in the region since the 1600s.

Sediment and Nutrient Sources as well as Interspecific Competition Control Growth of 2 Common Species of Coral Reef Macroalgae

NASA Astrophysics Data System (ADS)

Moore, T.; Fong, P.; Cuker, B.

2016-02-01

Aquatic communities worldwide are increasingly subjected to multiple anthropogenic stressors that often result in shifts in structure and function. On coral reefs, human impacts have been associated with phase-shifts from coral to algal domination. We hypothesized that the proliferation of these algal communities, especially on fringing reefs, may be facilitated by human alterations in nutrient enrichment and input of sediments from developed watersheds, which may also influence competitive outcomes among dominant algal species. To evaluate how changes in these abiotic stressors as well as competition may affect the growth of 2 common species of calcifying coral reef algae, Galaxaura fasciculata and Padina boryana, we conducted 3 separate 2 factor mesocosm experiments modeling fringing reefs in Moorea, French Polynesia. In the first experiment, we varied sediment source (marine vs. terrestrial) and water column nutrients (ambient vs. enriched) for each species separately and measured growth after 7 days. While both algae grew faster in enriched compared to ambient nutrients, P. boryana performed best with marine sediment (+27% change in biomass) and G. fasciculata with terrestrial sediment (+14% change in biomass). Next, we varied sediment source (as above) as well as sediment nutrients (ambient/enriched) for each species. While P. boryana lost 44% biomass in the eutrophic terrestrial sediment treatment, G. fasciculata performed the best and gained 19% biomass. Finally, we varied competition (alone/together) and terrestrial sediment nutrients (ambient/enriched). Over the 7 day period, P. boryana lost 64% biomass when in competition with G. fasciculata in the enriched treatment while G. fasciculata gained 38% biomass when in competition with P. boryana in the ambient treatment. These results indicate that, while growth of both species of macroalgae was regulated by nutrients, sediments, and competition, each responded uniquely to these controlling factors.

Scenario-based numerical modelling and the palaeo-historic record of tsunamis in Wallis and Futuna, Southwest Pacific

NASA Astrophysics Data System (ADS)

Lamarche, G.; Popinet, S.; Pelletier, B.; Mountjoy, J.; Goff, J.; Delaux, S.; Bind, J.

2015-08-01

We investigated the tsunami hazard in the remote French territory of Wallis and Futuna, Southwest Pacific, using the Gerris flow solver to produce numerical models of tsunami generation, propagation and inundation. Wallis consists of the inhabited volcanic island of Uvéa that is surrounded by a lagoon delimited by a barrier reef. Futuna and the island of Alofi form the Horn Archipelago located ca. 240 km east of Wallis. They are surrounded by a narrow fringing reef. Futuna and Alofi emerge from the North Fiji Transform Fault that marks the seismically active Pacific-Australia plate boundary. We generated 15 tsunami scenarios. For each, we calculated maximum wave elevation (MWE), inundation distance and expected time of arrival (ETA). The tsunami sources were local, regional and distant earthquake faults located along the Pacific Rim. In Wallis, the outer reef may experience 6.8 m-high MWE. Uvéa is protected by the barrier reef and the lagoon, but inundation depths of 2-3 m occur in several coastal areas. In Futuna, flow depths exceeding 2 m are modelled in several populated areas, and have been confirmed by a post-September 2009 South Pacific tsunami survey. The channel between the islands of Futuna and Alofi amplified the 2009 tsunami, which resulted in inundation distance of almost 100 m and MWE of 4.4 m. This first ever tsunami hazard modelling study of Wallis and Futuna compares well with palaeotsunamis recognised on both islands and observation of the impact of the 2009 South Pacific tsunami. The study provides evidence for the mitigating effect of barrier and fringing reefs from tsunamis.

Scenario-based numerical modelling and the palaeo-historic record of tsunamis in Wallis and Futuna, Southwest Pacific

NASA Astrophysics Data System (ADS)

Lamarche, G.; Popinet, S.; Pelletier, B.; Mountjoy, J.; Goff, J.; Delaux, S.; Bind, J.

2015-04-01

We investigated the tsunami hazard in the remote French territory of Wallis and Futuna, Southwest Pacific, using the Gerris flow solver to produce numerical models of tsunami generation, propagation and inundation. Wallis consists of the inhabited volcanic island of Uvéa that is surrounded by a lagoon delimited by a barrier reef. Futuna and the island of Alofi forms the Horn Archipelago located ca. 240 km east of Wallis. They are surrounded by a narrow fringing reef. Futuna and Alofi emerge from the North Fiji Transform Fault that marks the seismically active Pacific-Australia plate boundary. We generated fifteen tsunami scenarios. For each, we calculated maximum wave elevation (MWE), inundation distance, and Expected Time of Arrival (ETA). The tsunami sources were local, regional and distant earthquake faults located along the Pacific Rim. In Wallis, the outer reef may experience 6.8 m-high MWE. Uvéa is protected by the barrier reef and the lagoon, but inundation depths of 2-3 m occur in several coastal areas. In Futuna, flow depths exceeding 2 m are modelled in several populated areas, and have been confirmed by a post-September 2009 South Pacific tsunami survey. The channel between the islands of Futuna and Alofi amplified the 2009 tsunami, which resulted in inundation distance of almost 100 m and MWE of 4.4 m. This first-ever tsunami hazard modelling study of Wallis and Futuna compares well with palaeotsunamis recognised on both islands and observation of the impact of the 2009 South Pacific tsunami. The study provides evidence for the mitigating effect of barrier and fringing reefs from tsunamis.

Dynamics of a fringe mangrove forest detected by Landsat images in the Mekong delta, Vietnam

NASA Astrophysics Data System (ADS)

Fagherazzi, S.; Nardin, W.; Woodcock, C. E.; Locatelli, S.; Rulli, M. C.; Pasquarella, V. J.

2016-02-01

Mangrove forests dominate many tropical coastlines and are one of the most bio-diverse and productive environments on Earth. However, little is known of the large scale dynamics of mangrove canopies and how they colonize intertidal areas. Here we focus on a fringe mangrove forest located in the Mekong delta, Vietnam, a fast prograding shoreline where mangroves are encroaching tidal flats. The spatial and temporal evolution of the mangrove canopy is studied using a time series of Landsat images spanning two decades as well as Shuttle Radar Topography Mission (SRTM) elevation data. Our results show that fast mangrove expansion is followed by an increase in Normalized Difference Vegetation Index (NDVI) in the newly established canopy. We observe two different dynamics of the mangrove fringe: near the mouth of the rivers where the fringe boundary is linear the canopy expands uniformly on the tidal flats with a high colonization rate and high NDVI values. Far from the river mouths the fringe boundary is highly irregular and mangroves expansion in characterized by sparse vegetated patches displaying low NDVI values. We conclude that high NDVI values and a regular vegetation-water interface are indicative of stable mangrove canopies undergoing expansion, and therefore of resilient coastlines. In the Mekong delta these area are more likely located near a river mouth.

The influence of heterogeneity on coastal groundwater flow - physical and numerical modeling of fringing reefs, dykes and structured conductivity fields

NASA Astrophysics Data System (ADS)

Houben, Georg J.; Stoeckl, Leonard; Mariner, Katrina E.; Choudhury, Anis S.

2018-03-01

Geological heterogeneity of the subsurface, caused by both discrete features and spatially distributed hydraulic conductivity fields, affects the flow of coastal groundwater. It influences the shape and the position of the interface between saltwater and freshwater, as well as the location and flux rate of freshwater discharge to the ocean. Fringing reefs lead to a bimodal regime of freshwater discharge, with discharge at the beach face and through deeper, submarine springs. Impermeable vertical flow barriers (dykes) lead to an impoundment of fresh groundwater and a compartmentalization of the aquifer but also to a delayed expulsion of saline water. Spatially distributed conductivity fields affect the shape of the interface and the geometry of the saltwater wedge. Higher effective conductivities lead to a further landward intrusion of the wedge toe. These flow characteristics can be important for groundwater extraction, the delineation of protection zones and the assessment of contaminant transport to coastal ecosystems.

A Bayesian-based system to assess wave-driven flooding hazards on coral reef-lined coasts

USGS Publications Warehouse

Pearson, S. G.; Storlazzi, Curt; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-01-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, “XBNH”) was used to create a large synthetic database for use in a “Bayesian Estimator for Wave Attack in Reef Environments” (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.

Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Albright, R.; Langdon, C.; Anthony, K. R. N.

2013-10-01

Ocean acidification is projected to shift coral reefs from a state of net accretion to one of net dissolution this century. Presently, our ability to predict global-scale changes to coral reef calcification is limited by insufficient data relating seawater carbonate chemistry parameters to in situ rates of reef calcification. Here, we investigate diel and seasonal trends in carbonate chemistry of the Davies Reef flat in the central Great Barrier Reef and relate these trends to benthic carbon fluxes by quantifying net ecosystem calcification (nec) and net community production (ncp). Results show that seawater carbonate chemistry of the Davies Reef flat is highly variable over both diel and seasonal cycles. pH (total scale) ranged from 7.92 to 8.17, pCO2 ranged from 272 to 542 μatm, and aragonite saturation state (Ωarag) ranged from 2.9 to 4.1. Diel cycles in carbonate chemistry were primarily driven by ncp, and warming explained 35% and 47% of the seasonal shifts in pCO2 and pH, respectively. Daytime ncp averaged 37 ± 19 mmol C m-2 h-1 in summer and 33 ± 13 mmol C m-2 h-1 in winter; nighttime ncp averaged -30 ± 25 and -7 ± 6 mmol C m-2 h-1 in summer and winter, respectively. Daytime nec averaged 11 ± 4 mmol CaCO3 m-2 h-1 in summer and 8 ± 3 mmol CaCO3 m-2 h-1 in winter, whereas nighttime nec averaged 2 ± 4 mmol and -1 ± 3 mmol CaCO3 m-2 h-1 in summer and winter, respectively. Net ecosystem calcification was highly sensitive to changes in Ωarag for both seasons, indicating that relatively small shifts in Ωarag may drive measurable shifts in calcification rates, and hence carbon budgets, of coral reefs throughout the year.

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship

PubMed Central

Pickering, Emily A.; Adler, Alyssa M.; Taylor, J. Christopher; Peterson, Charles H.

2017-01-01

Structural complexity, a form of habitat heterogeneity, influences the structure and function of ecological communities, generally supporting increased species density, richness, and diversity. Recent research, however, suggests the most complex habitats may not harbor the highest density of individuals and number of species, especially in areas with elevated human influence. Understanding nuances in relationships between habitat heterogeneity and ecological communities is warranted to guide habitat-focused conservation and management efforts. We conducted fish and structural habitat surveys of thirty warm-temperate reefs on the southeastern US continental shelf to quantify how structural complexity influences fish communities. We found that intermediate complexity maximizes fish abundance on natural and artificial reefs, as well as species richness on natural reefs, challenging the current paradigm that abundance and other fish community metrics increase with increasing complexity. Naturally occurring rocky reefs of flat and complex morphologies supported equivalent abundance, biomass, species richness, and community composition of fishes. For flat and complex morphologies of rocky reefs to receive equal consideration as essential fish habitat (EFH), special attention should be given to detecting pavement type rocky reefs because their ephemeral nature makes them difficult to detect with typical seafloor mapping methods. Artificial reefs of intermediate complexity also maximized fish abundance, but human-made structures composed of low-lying concrete and metal ships differed in community types, with less complex, concrete structures supporting lower numbers of fishes classified largely as demersal species and metal ships protruding into the water column harboring higher numbers of fishes, including more pelagic species. Results of this study are essential to the process of evaluating habitat function provided by different types and shapes of reefs on the seafloor so that all EFH across a wide range of habitat complexity may be accurately identified and properly managed. PMID:28873447

Predicting invertebrate assemblage composition from harvesting pressure and environmental characteristics on tropical reef flats

NASA Astrophysics Data System (ADS)

Jimenez, H.; Dumas, P.; Ponton, D.; Ferraris, J.

2012-03-01

Invertebrates represent an essential component of coral reef ecosystems; they are ecologically important and a major resource, but their assemblages remain largely unknown, particularly on Pacific islands. Understanding their distribution and building predictive models of community composition as a function of environmental variables therefore constitutes a key issue for resource management. The goal of this study was to define and classify the main environmental factors influencing tropical invertebrate distributions in New Caledonian reef flats and to test the resulting predictive model. Invertebrate assemblages were sampled by visual counting during 2 years and 2 seasons, then coupled to different environmental conditions (habitat composition, hydrodynamics and sediment characteristics) and harvesting status (MPA vs. non-MPA and islets vs. coastal flats). Environmental conditions were described by a principal component analysis (PCA), and contributing variables were selected. Permutational analysis of variance (PERMANOVA) was used to test the effects of different factors (status, flat, year and season) on the invertebrate assemblage composition. Multivariate regression trees (MRT) were then used to hierarchically classify the effects of environmental and harvesting variables. MRT model explained at least 60% of the variation in structure of invertebrate communities. Results highlighted the influence of status (MPA vs. non-MPA) and location (islet vs. coastal flat), followed by habitat composition, organic matter content, hydrodynamics and sampling year. Predicted assemblages defined by indicator families were very different for each environment-exploitation scenario and correctly matched a calibration data matrix. Predictions from MRT including both environmental variables and harvesting pressure can be useful for management of invertebrates in coral reef environments.

Earth Observations taken by the Expedition 10 crew

NASA Image and Video Library

2004-12-03

ISS010-E-09287 (3 December 2004) --- Howland Island, Oceania is featured in this digital image photographed by an Expedition 10 crewmember on the International Space Station (ISS). Howland Island is a United States possession located in the north Pacific between Australia and the Hawaiian Islands. Prior to 1890, organic nitrate (guano) was mined from the island by both the United States and the British. This tiny island is currently part of the US National Wildlife Refuge system, and provides nesting areas and forage for a variety of birds and marine wildlife. The island is composed of coral fragments and is surrounded by an active fringing reef. White breakers encircling the island indicate the position of the reef. Astronauts aboard the Space Station photograph numerous reefs around the world as part of a global mapping and monitoring program. High-resolution images such as this one are used to update geographic maps of reefs and islands, assess the health of reef ecosystems, and calculate bathymetry of the surrounding ocean bottom.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lighty, R.G.; Russell, K.L.

Transect mapping and petrologic studies reveal a new depositional model and limited diagenesis of a well-exposed Pleistocene reef outcrop at Ambergris Cay, northern Belize. This emergent shelf-edge reef forms a rocky wave-washed headland at the northern terminus of the present-day 250 km long flourishing Belize Barrier Reef. Previously, the Belize reef outcrop was thought to extend southward in the subsurface beneath the modern barrier reef as a Pleistocene equivalent. The authors study indicate that this outcrop is a large, coral patch reef and not part of a barrier reef trend. Sixteen transects 12.5 m apart described in continuous cm incrementsmore » from fore reef to back reef identified: extensive deposits of broken Acropora cervicornis; small thickets of A. palmata with small, oriented branches; and muddy skeletal sediments with few corals or reef rubble. Thin section and SEM studies show three phases of early submarine cementation: syntaxial and rosette aragonite; Mg-calcite rim cement and peloids; and colloidal Mg-calcite geopetal fill. Subaerial exposure in semi-arid northern Belize caused only minor skeletal dissolution, some precipitation of vadose whisker calcite, and no meteoric phreatic diagenesis. Facies geometry, coral assemblages, lack of rubble deposits, coralline algal encrustations and Millepora framework, and recognition of common but discrete submarine cements, all indicate that this Pleistocene reef was an isolated, coral-fringed sediment buildup similar to may large patch reefs existing today in moderate-energy shelf environments behind the modern barrier reef in central and southern Belize.« less

76 FR 39858 - Western Pacific Fisheries; Approval of a Marine Conservation Plan for Guam

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-07

... assessment and monitoring of Guam coral reef flat communities. Objective 6. Domestic fisheries development... life-history data of nearshore reef fish. g. Support Guam volunteer fishery data collection project. h...

Citizen-volunteer and professional monitoring to identify fecal sources of contamination in southwestern Puerto Rico

EPA Science Inventory

High concentrations of nutrients, fecal microorganisms, and sediments in surface waters can be a public health threat and can impact fringing coral reefs in Guánica Bay in southwestern Puerto Rico. Yet, the main factors and sources contributing to water quality degradation...

pH homeostasis during coral calcification in a free ocean CO2 enrichment (FOCE) experiment, Heron Island reef flat, Great Barrier Reef

PubMed Central

Georgiou, Lucy; Falter, James; Trotter, Julie; Kline, David I.; Holcomb, Michael; Dove, Sophie G.; Hoegh-Guldberg, Ove; McCulloch, Malcolm

2015-01-01

Geochemical analyses (δ11B and Sr/Ca) are reported for the coral Porites cylindrica grown within a free ocean carbon enrichment (FOCE) experiment, conducted on the Heron Island reef flat (Great Barrier Reef) for a 6-mo period from June to early December 2010. The FOCE experiment was designed to simulate the effects of CO2-driven acidification predicted to occur by the end of this century (scenario RCP4.5) while simultaneously maintaining the exposure of corals to natural variations in their environment under in situ conditions. Analyses of skeletal growth (measured from extension rates and skeletal density) showed no systematic differences between low-pH FOCE treatments (ΔpH = ∼−0.05 to −0.25 units below ambient) and present day controls (ΔpH = 0) for calcification rates or the pH of the calcifying fluid (pHcf); the latter was derived from boron isotopic compositions (δ11B) of the coral skeleton. Furthermore, individual nubbins exhibited near constant δ11B compositions along their primary apical growth axes (±0.02 pHcf units) regardless of the season or treatment. Thus, under the highly dynamic conditions of the Heron Island reef flat, P. cylindrica up-regulated the pH of its calcifying fluid (pHcf ∼8.4–8.6), with each nubbin having near-constant pHcf values independent of the large natural seasonal fluctuations of the reef flat waters (pH ∼7.7 to ∼8.3) or the superimposed FOCE treatments. This newly discovered phenomenon of pH homeostasis during calcification indicates that coral living in highly dynamic environments exert strong physiological controls on the carbonate chemistry of their calcifying fluid, implying a high degree of resilience to ocean acidification within the investigated ranges. PMID:26438833

pH homeostasis during coral calcification in a free ocean CO2 enrichment (FOCE) experiment, Heron Island reef flat, Great Barrier Reef.

PubMed

Georgiou, Lucy; Falter, James; Trotter, Julie; Kline, David I; Holcomb, Michael; Dove, Sophie G; Hoegh-Guldberg, Ove; McCulloch, Malcolm

2015-10-27

Geochemical analyses (δ(11)B and Sr/Ca) are reported for the coral Porites cylindrica grown within a free ocean carbon enrichment (FOCE) experiment, conducted on the Heron Island reef flat (Great Barrier Reef) for a 6-mo period from June to early December 2010. The FOCE experiment was designed to simulate the effects of CO2-driven acidification predicted to occur by the end of this century (scenario RCP4.5) while simultaneously maintaining the exposure of corals to natural variations in their environment under in situ conditions. Analyses of skeletal growth (measured from extension rates and skeletal density) showed no systematic differences between low-pH FOCE treatments (ΔpH = ∼-0.05 to -0.25 units below ambient) and present day controls (ΔpH = 0) for calcification rates or the pH of the calcifying fluid (pHcf); the latter was derived from boron isotopic compositions (δ(11)B) of the coral skeleton. Furthermore, individual nubbins exhibited near constant δ(11)B compositions along their primary apical growth axes (±0.02 pHcf units) regardless of the season or treatment. Thus, under the highly dynamic conditions of the Heron Island reef flat, P. cylindrica up-regulated the pH of its calcifying fluid (pHcf ∼8.4-8.6), with each nubbin having near-constant pHcf values independent of the large natural seasonal fluctuations of the reef flat waters (pH ∼7.7 to ∼8.3) or the superimposed FOCE treatments. This newly discovered phenomenon of pH homeostasis during calcification indicates that coral living in highly dynamic environments exert strong physiological controls on the carbonate chemistry of their calcifying fluid, implying a high degree of resilience to ocean acidification within the investigated ranges.

Modern coral reefs of western Atlantic: new geological perspective

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacIntyre, I.G.

1988-11-01

Contrary to popular belief of the late 1960s, western Atlantic Holocene reefs have a long history and are not feeble novice nearshore veneers that barely survived postglacial temperatures. Rather, the growth of these reefs kept pace with the rising seas of the Holocene transgression and their development was, for the most part, controlled by offshore wave-energy conditions and the relationship between changing sea levels and local shelf topography. Thus, the outer shelves of the eastern Caribbean in areas of high energy have relict reefs consisting predominantly of Acropora palmata, a robust shallow-water coral. The flooding of adjacent shelves during themore » postglacial transgression introduced stress conditions that terminated the growth of these reefs. When, about 7000 yr ago, shelf-water conditions improved, scattered deeper water coral communities reestablished themselves on these stranded shelf-edge reefs, and fringing and bank-barrier reefs began to flourish in shallow coastal areas. At the same time, the fragile and rapidly growing Acropora cervicornis and other corals flourished at greater depths on the more protected shelves of the western Caribbean and the Gulf of Mexico. As a result, late Holocene buildups more than 30 m thick developed in those areas. 7 figures.« less

Surface flatness measurement of quasi-parallel plates employing three-beam interference with strong reference beam

NASA Astrophysics Data System (ADS)

Sunderland, Zofia; Patorski, Krzysztof

2016-12-01

A big challenge for standard interferogram analysis methods such as Temporal Phase Shifting or Fourier Transform is a parasitic set of fringes which might occur in the analyzed fringe pattern intensity distribution. It is encountered, for example, when transparent glass plates with quasi-parallel surfaces are tested in Fizeau or Twyman-Green interferometers. Besides the beams reflected from the plate front surface and the interferometer reference the beam reflected from the plate rear surface also plays important role; its amplitude is comparable with the amplitude of other beams. In result we face three families of fringes of high contrast which cannot be easily separated. Earlier we proposed a competitive solution for flatness measurements which relies on eliminating one of those fringe sets from the three-beam interferogram and separating two remaining ones with the use of 2D Continuous Wavelet Transform. In this work we cover the case when the intensity of the reference beam is significantly higher than the intensities of two object beams. The main advantage of differentiating beam intensities is the change in contrast of individual fringe families. Processing of such three-beam interferograms is modified but also takes advantage of 2D CWT. We show how to implement this method in Twyman-Green and Fizeau setups and compare this processing path and measurement procedures with previously proposed solutions.

An overview of Miocene reefs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jordan, C.F. Jr.; Colgan, M.W.; Frost, S.H.

1990-05-01

Miocene reefs lived approximately within the latitudes of 27{degree}S to 48{degree}N compared with 25{degree}S and 32{degree}N for Holocene reefs. This expansion of reef-growing environments was the result of warm Miocene climates, aided by a eustatic sea level rise and tectonic styles that provided numerous foundations for reef development. The majority of Miocene reefs are found in three main areas: (1) Southeast Asia and the western Pacific, (2) the Mediterranean-Middle East, and (3) Middle America and the Caribbean. These regions, with their distinctive suites of coral and foramineral species, formed three biological provinces; respectively, they are the Indo-Pacific, Tethyan, and Westernmore » Atlantic provinces. Miocene reefs in Southeast Asia occur in several foreland basins as patch reef complexes on paleohighs and as barrier reefs in back-arc basins. Those reefs in the Mediterranean occur as fringing reefs, middle-shelf patch reefs, or as barrier reefs on the edges of tectonic blocks associated with Alpine thrust belts. Most reefs in the Caribbean grew on isolated open-ocean highs of volcanic origin. Miocene reefs display a diversity of framework types: (1) coral-encrusting, red algal boundstones with diverse coral faunas, (2) branching coral-encrusting, red algal boundstones with a limited Poritid fauna, (3) encrusting red algal boundstones. Barrier reef systems are especially rich in encrusting red algae and robust corals; grainstones are common as interbedded sediment. Patch reef complexes, however, display muddy carbonate textures, may have less diverse coral faunas, and commonly have larger foraminifera. The global distribution of Miocene reefs is important because (1) it provides insight into a paleoclimatic view of the earth during a major greenhouse stage and (2) Miocene buildups, such as the Arun (EUR of 14 tcf) and Bima fields (EUR of about 100 MMBO), are exploration targets.« less

Modern stromatolite reefs fringing a brackish coastline, Chetumal Bay, Belize

NASA Astrophysics Data System (ADS)

Rasmussen, Kenneth A.; MacIntyre, Ian G.; Prufert, Leslie

1993-03-01

Reef-forming stromatolites have been discovered along the windward shoreline of Chetumal Bay, Belize, just south of the mouth of the Rio Hondo. The reefs and surrounding sediment are formed by the precipitation of submicrocrystalline calcite upon the sheaths of filamentous cyanobacteria, principally Scytonema, under a seasonally fluctuating, generally brackish salinity regime (0‰10‰). Well-cemented, wave-resistant buttresses of coalesced stromatolite heads form arcuate or club-shaped reefs up to 42 m long and 1.5 m in relief that are partially emergent during low tide. Oncolitic rubble fields are present between well-developed reefs along the 1.5 km trend, which parallels the mangrove coastline 40-100 m offshore. The mode of reef growth, as illustrated by surface relief and internal structure, changes with increasing water depth and energy, proximity to bottom sediments, and dominant cyanobacterial taxa. Sediment trapping and binding by cyanobacteria are of limited importance to reef growth, and occur only where stromatolite heads or oncolites are in direct contact with the sandy sea floor. Radiocarbon-dated mangrove peat at the base of the reef suggests that it began to form about 2300 yr B.P., as shoreline encrustations that were stranded offshore following storm-induced retreat of the mangrove coast.

Mg/Ca and Sr/Ca as novel geochemical proxies for understanding sediment transport processes within coral reefs

NASA Astrophysics Data System (ADS)

Gacutan, J.; Vila-Concejo, A.; Nothdurft, L. D.; Fellowes, T. E.; Cathey, H. E.; Opdyke, B. N.; Harris, D. L.; Hamylton, S.; Carvalho, R. C.; Byrne, M.; Webster, J. M.

2017-10-01

Sediment transport is a key driver of reef zonation and biodiversity, where an understanding of sediment dynamics gives insights into past reef processes and allows the prediction of geomorphic responses to changing environmental conditions. However, modal conditions within the back-reef seldom promote sediment transport, hence direct observation is inherently difficult. Large benthic foraminifera (LBF) have previously been employed as 'tracers' to infer sediment transport pathways on coral reefs, as their habitat is largely restricted to the algal flat and post-mortem, their calcium carbonate test is susceptible to sediment transport forces into the back-reef. Foraminiferal test abundance and post-depositional test alteration have been used as proxies for sediment transport, although the resolution of these measures becomes limited by low test abundance and the lack of variation within test alteration. Here we propose the novel use of elemental ratios as a proxy for sediment transport. Two species, Baculogypsina sphaerulata and Calcarina capricornia, were analysed using a taphonomic index within One Tree and Lady Musgrave reefs, Great Barrier Reef (Australia). Inductively coupled plasma-atomic emission spectrometry (ICP-AES) was used to determine Mg/Ca and Sr/Ca and these ratios were compared with taphonomic data. Decreases in test Mg/Ca accompany increases in Sr/Ca in specimens from algal-flat to lagoonal samples in both species, mirroring trends indicated by taphonomic values, therefore indicating a relationship with test alteration. To delineate mechanisms driving changes in elemental ratios, back-scattered electron (BSE) images, elemental mapping and in situ quantitative spot analyses by electron microprobe microanalysis (EPMA) using wavelength dispersive X-ray spectrometers (WDS) were performed on un-altered algal flat and heavily abraded tests for both species. EPMA analyses reveal heterogeneity in Mg/Ca between spines and the test wall, implying the loss of appendages results in a decrease in Mg/Ca. BSE imaging and WDS elemental mapping provided evidence for cementation, facilitated by microbial-boring as the primary cause of increasing Sr/Ca. These novel proxies hold advantages over taphonomic measures and further provide a rapid method to infer sediment transport pathways within back-reef environments.

Holocene reef growth over irregular Pleistocene karst confirms major influence of hydrodynamic factors on Holocene reef development

NASA Astrophysics Data System (ADS)

Salas-Saavedra, Marcos; Dechnik, Belinda; Webb, Gregory E.; Webster, Jody M.; Zhao, Jian-xin; Nothdurft, Luke D.; Clark, Tara R.; Graham, Trevor; Duce, Stephanie

2018-01-01

Many factors govern reef growth through time, but their relative contributions are commonly poorly known. A prime example is the degree to which modern reef morphology is controlled by contemporary hydrodynamic settings or antecedent topography. Fortunately, reefs record essential information for interpreting palaeoclimate and palaeoenvironment within their structure as they accrete in response to environmental change. Five new cores recovered from the margin of Heron Reef, southern Great Barrier Reef (GBR), provide new insights into Holocene reef development and relationships between Holocene reefs and Pleistocene antecedent topography, suggesting much more irregular underlying topography than expected based on the configuration of the overlying modern reef margin. Cores were recovered to depths of 30 m and 94 new 230Th ages document growth between 8408 ± 24 and 2222 ± 16 yrs. BP. One core penetrated Pleistocene basement at ∼15.3 m with Holocene reef growth initiated by ∼8.4 ka BP. However, 1.83 km west along the same smooth margin, four cores failed to penetrate Pleistocene basement at depths between 20 and 30 m, suggesting that the margin at this location overlies a karst valley, or alternatively, the antecedent platform does not extend there. A 48 m-long margin-perpendicular transect of three cores documents the filling of this topographic low, at least 30 m beneath the current reef top, with seaward lateral accretion at a rate of 34.3 m/ka. Cores indicate steady vertical and lateral accretion between 3.2 and 1.8 ka BP with no evidence of the hiatus in reef flat progradation seen in most other offshore reefs of the GBR at that time. These cores suggest that the relative protection afforded by the valley allowed for unconsolidated sediment to accumulate, enabling continuous progradation even when other areas of the reef flat appear to have 'turned off'. Additionally, the cores suggest that although reefs in the southern GBR clearly owe their location to Pleistocene antecedent topography, modern reef morphology at sea level primarily reflects the interaction of Holocene reef communities with contemporary hydrodynamics.

Earth Observations taken by the Expedition 18 Crew

NASA Image and Video Library

2009-01-06

ISS018-E-018129 (6 Jan. 2009) --- Atafu Atoll in the Southern Pacific Ocean is featured in this image photographed by an Expedition 18 crewmember on the International Space Station. At roughly eight kilometers wide, Atafu Atoll is the smallest of three atolls (with Nukunonu and Fakaofo atolls to the southeast, not shown) comprising the Tokelau Islands group located in the southern Pacific Ocean. Swains Island to the south (not shown) is also considered part of the Tokelau group. The political entity of Tokelau is currently a territory of New Zealand. In recent years, public referendums on independence within the islands have been held, but have not received sufficient support to move forward. The primary settlement on Atafu is a village located at the northwestern corner of the atoll ? indicated by an area of light gray dots in this photograph. The typical ring shape of the atoll is the result of coral reefs building up around a former volcanic island. Over geologic time, the central volcano has subsided beneath the water surface, leaving the fringing reefs and a central lagoon that contains submerged coral reefs. Erosion and soil development on the surfaces of the exposed fringing reefs has lead to formation of tan to light brown beach deposits (southern and western sides of the atoll) and green vegetation cover (northern and eastern sides of the atoll). The Tokelau Islands, including Atafu Atoll, suffered significant inundation and erosion during Tropical Cyclone Percy in 2005. The approximate elevation of Atafu Atoll is only two meters above the tidal high water level. Vulnerability to tropical cyclones and potential sea level rise makes the long-term habitability of the atoll uncertain.

Subaerially exposed Holocene coral reef, Enriquillo Valley, Dominican Republic

NASA Technical Reports Server (NTRS)

Mann, P.; Taylor, F. W.; Burke, K.; Kulstad, R.

1984-01-01

An extremely well-preserved Holocene fringing coral reef occurs at an average elevation of 5 m below sea level around the margins of the central Enriquillo Valley, Dominican Republic. The reef records the latest marine incursion from the east into an 85-km-long, 12-km-wide tectonic depression and appears to represent a unique preservation. Excellent cross sections of the reef exposed in erosional gullies reveal a composition and zonation typical of modern Caribbean reefs that are found in offshore low-energy environments. Radiocarbon age determinations (2) indicate that reef growth coincided with sea-level rise following the last ice age (5,930 + or - 100 to 4,760 + or - 90 yr B.P.). Deltaic deposition and possible vertical movements on active fault scarps dammed the eastern mouth of the valley and created Lago Enriquillo, the level of which was then rapidly lowered by evaporation in an arid climate to produce a saline lake approximately 40 m below sea level. Stratigraphic studies of rocks along the valley edge and data from drill holes in the basin center indicate that there were earlier post-Miocene marine incursions similar to that described here.

Coral bleaching, hurricane damage, and benthic cover on coral reefs in St. John, U.S. Virgin Islands: A comparison of surveys with the chain transect method and videography

USGS Publications Warehouse

Rogers, C.S.; Miller, J.

2001-01-01

The linear chain transect method and videography were used to quantify the percent cover by corals, macroalgae, gorgonians, other living organisms, and substrate along permanent transects on two fringing reefs off St. John. Both methods were used simultaneously on Lameshur reef in November 1998, and on Newfound reef in March and October 1998. Hurricane Georges passed over St. John in September 1998, and a severe coral bleaching episode began the same month. Both methods gave remarkably similar values for coral cover, while the video method gave consistently higher values for gorgonians and macroalgae. The most dramatic difference was in the quantification of bleaching. At Newfound, the chain method indicated 13.4% (SD = 14.1) of the coral tissues were bleached and the video method, 43.4% (SD = 13.0). Corresponding values at Lameshur were 18.1% (SD = 22.3) and 46.5% (SD = 13.3). Although hurricane damage was conspicuous at Newfound reef, neither method showed significant changes in coral cover or other categories as a result of the storm.

The influence of coral reef benthic condition on associated fish assemblages.

PubMed

Chong-Seng, Karen M; Mannering, Thomas D; Pratchett, Morgan S; Bellwood, David R; Graham, Nicholas A J

2012-01-01

Accumulative disturbances can erode a coral reef's resilience, often leading to replacement of scleractinian corals by macroalgae or other non-coral organisms. These degraded reef systems have been mostly described based on changes in the composition of the reef benthos, and there is little understanding of how such changes are influenced by, and in turn influence, other components of the reef ecosystem. This study investigated the spatial variation in benthic communities on fringing reefs around the inner Seychelles islands. Specifically, relationships between benthic composition and the underlying substrata, as well as the associated fish assemblages were assessed. High variability in benthic composition was found among reefs, with a gradient from high coral cover (up to 58%) and high structural complexity to high macroalgae cover (up to 95%) and low structural complexity at the extremes. This gradient was associated with declining species richness of fishes, reduced diversity of fish functional groups, and lower abundance of corallivorous fishes. There were no reciprocal increases in herbivorous fish abundances, and relationships with other fish functional groups and total fish abundance were weak. Reefs grouping at the extremes of complex coral habitats or low-complexity macroalgal habitats displayed markedly different fish communities, with only two species of benthic invertebrate feeding fishes in greater abundance in the macroalgal habitat. These results have negative implications for the continuation of many coral reef ecosystem processes and services if more reefs shift to extreme degraded conditions dominated by macroalgae.

Carbonate system parameters of an algal-dominated reef along west Maui

USGS Publications Warehouse

Prouty, Nancy G.; Yates, Kimberly K.; Smiley, Nathan A.; Gallagher, Christopher; Cheriton, Olivia; Storlazzi, Curt

2018-01-01

Constraining coral reef metabolism and carbon chemistry dynamics are fundamental for understanding and predicting reef vulnerability to rising coastal CO2 concentrations and decreasing seawater pH. However, few studies exist along reefs occupying densely inhabited shorelines with known input from land-based sources of pollution. The shallow coral reefs off Kahekili, West Maui, are exposed to nutrient-enriched, low-pH submarine groundwater discharge (SGD) and are particularly vulnerable to the compounding stressors from land-based sources of pollution and lower seawater pH. To constrain the carbonate chemistry system, nutrients and carbonate chemistry were measured along the Kahekili reef flat every 4 h over a 6-d sampling period in March 2016. Abiotic process – primarily SGD fluxes – controlled the carbonate chemistry adjacent to the primary SGD vent site, with nutrient-laden freshwater decreasing pH levels and favoring undersaturated aragonite saturation (Ωarag) conditions. In contrast, diurnal variability in the carbonate chemistry at other sites along the reef flat was driven by reef community metabolism. Superimposed on the diurnal signal was a transition during the second sampling period to a surplus of total alkalinity (TA) and dissolved inorganic carbon (DIC) compared to ocean end-member TA and DIC measurements. A shift from net community production and calcification to net respiration and carbonate dissolution was identified. This transition occurred during a period of increased SGD-driven nutrient loading, lower wave height, and reduced current speeds. This detailed study of carbon chemistry dynamics highlights the need to incorporate local effects of nearshore oceanographic processes into predictions of coral reef vulnerability and resilience.

The wicked problem of China's disappearing coral reefs.

PubMed

Hughes, Terry P; Huang, Hui; Young, Matthew A L

2013-04-01

We examined the development of coral reef science and the policies, institutions, and governance frameworks for management of coral reefs in China in order to highlight the wicked problem of preserving reefs while simultaneously promoting human development and nation building. China and other sovereign states in the region are experiencing unprecedented economic expansion, rapid population growth, mass migration, widespread coastal development, and loss of habitat. We analyzed a large, fragmented literature on the condition of coral reefs in China and the disputed territories of the South China Sea. We found that coral abundance has declined by at least 80% over the past 30 years on coastal fringing reefs along the Chinese mainland and adjoining Hainan Island. On offshore atolls and archipelagos claimed by 6 countries in the South China Sea, coral cover has declined from an average of >60% to around 20% within the past 10-15 years. Climate change has affected these reefs far less than coastal development, pollution, overfishing, and destructive fishing practices. Ironically, these widespread declines in the condition of reefs are unfolding as China's research and reef-management capacity are rapidly expanding. Before the loss of corals becomes irreversible, governance of China's coastal reefs could be improved by increasing public awareness of declining ecosystem services, by providing financial support for training of reef scientists and managers, by improving monitoring of coral reef dynamics and condition to better inform policy development, and by enforcing existing regulations that could protect coral reefs. In the South China Sea, changes in policy and legal frameworks, refinement of governance structures, and cooperation among neighboring countries are urgently needed to develop cooperative management of contested offshore reefs. © 2012 Society for Conservation Biology.

Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification

NASA Astrophysics Data System (ADS)

DeCarlo, Thomas M.; Cohen, Anne L.; Wong, George T. F.; Shiah, Fuh-Kwo; Lentz, Steven J.; Davis, Kristen A.; Shamberger, Kathryn E. F.; Lohmann, Pat

2017-01-01

Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ˜8.5, significantly elevated above that of the surrounding open ocean (˜8.0-8.1) as a consequence of daytime NEP (up to 112 mmol C m-2 h-1). Diurnal-averaged NEC was 390 ± 90 mmol CaCO3 m-2 d-1, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C m-2 h-1. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.

Preliminary assessment of bioengineered fringing shoreline reefs in Grand Isle and Breton Sound, Louisiana

USGS Publications Warehouse

La Peyre, Megan K.; Schwarting, Lindsay; Miller, Shea

2013-01-01

Restoration of three-dimensional shell habitats in coastal Louisiana presents a valuable and potentially self-sustaining approach to providing shoreline protection and critical nekton habitat and may contribute to water quality maintenance. The use of what has been called “living shorelines” is particularly promising because in addition to the hypothesized shoreline protection services, it is predicted that, if built and located in viable sites, these living shorelines may ultimately contribute to water quality maintenance through filtration of bivalves and may enhance nekton habitat. This approach, however, has not been tested extensively in different shallow water estuarine settings; understanding under what conditions a living shoreline must have to support a sustainable oyster population, and where these reefs may provide valuable shoreline protection, is key to ensuring that this approach provides an effective tool for coastal restoration. This project gathered preliminary data on the sustainability and shoreline stabilization of three large bioengineered fringing reefs located in Grand Isle, Lake Eloi, and Lake Fortuna, Louisiana. We collected preconstruction and postconstruction physiochemical and biological data by using a before-after-control-impact approach to evaluate the effectiveness of these living shoreline structures on reducing marsh erosion, enabling reef sustainability, and providing other ecosystem benefits. Although this project was originally designed to compare reef performance and impacts across three different locations over 2 years, delays in construction because of the Deepwater Horizon oil spill resulted in reefs being built from 12 to 18 months later than anticipated. As a result, monitoring postconstruction was severely limited. One reef, Grand Isle, was completed in March 2011 and monitored up to 18 months postcreation, whereas Lake Eloi and Lake Fortuna reefs were not completed until January 2012, and only 8 months of postconstruction data are available. Data for the latter two sites thus reflect only the 2012 spring/summer seasons, which were further impacted by a direct hit by Hurricane Isaac in August 2012, which resulted in shoreward movement of approximately 14 percent of the bioengineered structures at Lake Fortuna. Given the shortened monitoring timeframe and significant differences in construction schedules, we were not able to provide a full postconstruction assessment of the sites or a full comparison of site success based on local site characteristics. Because many of the impacts that were identified for monitoring reflect long-term processes, results and data presented should be interpreted cautiously. Sustainable oyster reefs require recruitment, growth, and survival at a rate that keeps pace with mortality and shell disarticulation. Although one site failed to recruit (establishment plus survival > 50 millimeters [mm]) over two spawning seasons, two sites only had 6 months postconstruction data available for assessment. Although there are good data on the requirements for oyster growth, there is limited explicit information on the site-specific water quality, hydrodynamic, and biological interaction effects that may determine successful reef establishment. Furthermore, interannual variability can significantly affect reef establishment, and our shortened timeframe of sampling (less than one spawning season for two of the reefs; two spawning seasons for one reef), combined with a lack of prerestoration monitoring data, limit our ability to draw any conclusions about long-term reef sustainability. Bioengineered reefs are thought to provide some benefits to shoreline stabilization through their structure by immediately attenuating wave energies and directly reducing erosion rates at shorelines sheltered by the reefs but also by increasing sediment deposition behind the reefs. Preliminary data indicate differences in reef impact by site; given the short timeframe of postconstruction data at two of the sites, and differences in reef placement between sites, however, it is difficult to draw any conclusions. Longer-term data collection and further analyses comparing reef placement; local wind, wave energy, sediment transport processes; and local bathymetry may help in parameterizing sites where fringing reefs may be most beneficial for shoreline protection. In addition to basic reef sustainability and shoreline stabilization, we measured both water quality parameters and nekton abundances around the newly created reefs and adjacent reference sites. Within the timeframe of monitoring, no effect of reefs on water quality was detected at any site. Given that water quality effects are hypothesized to result from the filtration activities of bivalves, and reefs either failed to recruit (settlement plus survival to > 50 mm) or successfully recruited but only had a couple months of growth prior to this report, it was not expected that an effect would be detectable in this timeframe. Nekton such as blue crab, gulf menhaden, and anchovies were found to be more abundant on the reefs; larger, more transient species were not found to be affected by reef presence. Future work examining smaller organisms and juveniles, including more explicit studies examining why and how these organisms preferentially use oyster reefs, would be useful in the design of other bioengineered reefs and help in understanding the role of the reefs in supporting the nekton community. It is clear from the initial work that ensuring correct site selection by better understanding what local site factors influence oyster populations is key to establishing successful living shoreline reefs. Ultimately, the success of the reefs in providing any ecosystem service relies on their ability to build a viable oyster population that is self-sustaining over the long term. As many of the ecosystem processes hypothesized to result from reefs develop over the long term (4–6 years), some level of monitoring over the next few years is highly recommended in order to accurately assess the long term viability of the reefs, their provision of ecosystem services, and to provide better guidance for future projects.

A multi-indicator approach for identifying shoreline sewage pollution hotspots adjacent to coral reefs.

PubMed

Abaya, Leilani M; Wiegner, Tracy N; Colbert, Steven L; Beets, James P; Carlson, Kaile'a M; Kramer, K Lindsey; Most, Rebecca; Couch, Courtney S

2018-04-01

Sewage pollution is contributing to the global decline of coral reefs. Identifying locations where it is entering waters near reefs is therefore a management priority. Our study documented shoreline sewage pollution hotspots in a coastal community with a fringing coral reef (Puakō, Hawai'i) using dye tracer studies, sewage indicator measurements, and a pollution scoring tool. Sewage reached shoreline waters within 9 h to 3 d. Fecal indicator bacteria concentrations were high and variable, and δ 15 N macroalgal values were indicative of sewage at many stations. Shoreline nutrient concentrations were two times higher than those in upland groundwater. Pollution hotspots were identified with a scoring tool using three sewage indicators. It confirmed known locations of sewage pollution from dye tracer studies. Our study highlights the need for a multi-indicator approach and scoring tool to identify sewage pollution hotspots. This approach will be useful for other coastal communities grappling with sewage pollution. Copyright © 2018 Elsevier Ltd. All rights reserved.

Settlement performance of the Mediterranean reef-builders Dendropoma cristatum (Biondi 1859) in response to natural bacterial films.

PubMed

La Marca, Emanuela Claudia; Catania, Valentina; Quatrini, Paola; Milazzo, Marco; Chemello, Renato

2018-06-01

The gastropod Dendropoma cristatum is a biogenic engineer of the central Mediterranean, forming reefs along the lower rocky intertidal fringe with a remarkable ecological role. To understand whether reef-associated biofilm cultivable bacterial and biofilm ageing may trigger the settlement of the juvenile snails, a combination of laboratory techniques and field experiments was used. Reef-associated biofilm cultivable bacteria were isolated, and a settlement-choice experiment was performed in situ on artificial biofilms composed of i) a mixture of six biofilm-forming selected isolates, ii) all the cultivable bacteria, and iii) 13-, 23-, 32-day old biofilms formed under natural conditions. Overall, settlement rate significantly differed among biofilm treatments (p < 0.0001). A significant positive correlation between biofilm ageing and juvenile D. cristatum settlement was assessed (r = 0.69 (p < 0.001), whereas the biofilm bacterial composition (relatively to the cultivable fraction) did not show any effect on the vermetid's settlement rate. Copyright © 2018. Published by Elsevier Ltd.

Observation of coral reefs on Ishigaki Island, Japan, using Landsat TM images and aerial photographs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsunaga, Tsuneo; Kayanne, Hajime

1997-06-01

Ishigaki Island is located at the southwestern end of Japanese Islands and famous for its fringing coral reefs. More than twenty LANDSAT TM images in twelve years and aerial photographs taken on 1977 and 1994 were used to survey two shallow reefs on this island, Shiraho and Kabira. Intensive field surveys were also conducted in 1995. All satellite images of Shiraho were geometrically corrected and overlaid to construct a multi-date satellite data set. The effects of solar elevation and tide on satellite imagery were studied with this data set. The comparison of aerial and satellite images indicated that significant changesmore » occurred between 1977 and 1984 in Kabira: rapid formation in the western part and decrease in the eastern part of dark patches. The field surveys revealed that newly formed dark patches in the west contain young corals. These results suggest that remote sensing is useful for not only mapping but also monitoring of shallow coral reefs.« less

Heavy metal contamination from gold mining recorded in Porites lobata skeletons, Buyat-Ratototok district, North Sulawesi, Indonesia.

PubMed

Edinger, Evan N; Azmy, Karem; Diegor, Wilfredo; Siregar, P Raja

2008-09-01

Shallow marine sediments and fringing coral reefs of the Buyat-Ratototok district of North Sulawesi, Indonesia, are affected by submarine disposal of tailings from industrial gold mining and by small-scale gold mining using mercury amalgamation. Between-site variation in heavy metal concentrations in shallow marine sediments was partially reflected by trace element concentrations in reef coral skeletons from adjacent reefs. Corals skeletons recorded silicon, manganese, iron, copper, chromium, cobalt, antimony, thallium, and lead in different concentrations according to proximity to sources, but arsenic concentrations in corals were not significantly different among sites. Temporal analysis found that peak concentrations of arsenic and chromium generally coincided with peak concentrations of silica and/or copper, suggesting that most trace elements in the coral skeleton were incorporated into detrital siliciclastic sediments, rather than impurities within skeletal aragonite.

[Distribution patterns and bioerosion of the sea urchin Centrostephanus coronatus (Diadematoida: Diadematidae), at the reef of Playa Blanca, Colombian Pacific].

PubMed

Toro-Farmer, Gerardo; Cantera, Jaime R; Londoño-Cruz, Edgardo; Orozco, Carlos; Neira, Raul

2004-03-01

Regular sea-urchins are one of the main bioeroding organisms affecting coral reefs around the world. The abundance, distribution and bioerosion rate of the sea-urchin Centrostephanus coronatus, were determined in different reef zones of Playa Blanca fringing reef (Gorgona Island, Colombian pacific coast) during 1997 and 1998. The erosion rates were determined calcinating the gut content of the sea-urchins to eliminate all organic components and preserve the inorganic portion of calcium carbonate. C. coronatus showed the highest densities towards the central zones of the reef (plain-crest and front) (12.4 ind/m2; range 0-48 ind/m2). The highest mean bioerosion rate was 0.103 kgCaCO3/m2/yr in the reef plain-crest (0-0.69 kgCaCO3/m2/yr). In the other zones, (back reef and reef front) the mean bioerosion rates were 0.071 (range 0-0.39) and 0.052 (range 0-0.31) kgCaCO3/m2/yr respectively. According to the present data, it can be seen that the destruction of coralline skeletons, produced in this reef by sea-urchins is rather low, compared with the abrasion caused by these organisms in other places of the world. However, the combined action of C. coronatus and other bioeroding organisms (borers and grazers). along with some adverse environmental factors to corals, can be causing a negative balance between normal processes of reef accretion-destruction in Gorgona Island reefs.

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages

PubMed Central

Waheed, Zarinah; van Mil, Harald G. J.; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W.

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park. PMID:26719987

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages.

PubMed

Waheed, Zarinah; van Mil, Harald G J; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park.

Physical and Biological Controls on the Carbonate Chemistry of Coral Reef Waters: Effects of Metabolism, Wave Forcing, Sea Level, and Geomorphology

PubMed Central

Falter, James L.; Lowe, Ryan J.; Zhang, Zhenlin; McCulloch, Malcolm

2013-01-01

We present a three-dimensional hydrodynamic-biogeochemical model of a wave-driven coral-reef lagoon system using the circulation model ROMS (Regional Ocean Modeling System) coupled with the wave transformation model SWAN (Simulating WAves Nearshore). Simulations were used to explore the sensitivity of water column carbonate chemistry across the reef system to variations in benthic reef metabolism, wave forcing, sea level, and system geomorphology. Our results show that changes in reef-water carbonate chemistry depend primarily on the ratio of benthic metabolism to the square root of the onshore wave energy flux as well as on the length and depth of the reef flat; however, they are only weakly dependent on channel geometry and the total frictional resistance of the reef system. Diurnal variations in pCO2, pH, and aragonite saturation state (Ωar) are primarily dependent on changes in net production and are relatively insensitive to changes in net calcification; however, net changes in pCO2, pH, and Ωar are more strongly influenced by net calcification when averaged over 24 hours. We also demonstrate that a relatively simple one-dimensional analytical model can provide a good description of the functional dependence of reef-water carbonate chemistry on benthic metabolism, wave forcing, sea level, reef flat morphology, and total system frictional resistance. Importantly, our results indicate that any long-term (weeks to months) net offsets in reef-water pCO2 relative to offshore values should be modest for reef systems with narrow and/or deep lagoons. Thus, the long-term evolution of water column pCO2 in many reef environments remains intimately connected to the regional-scale oceanography of offshore waters and hence directly influenced by rapid anthropogenically driven increases in pCO2. PMID:23326411

Physical and biological controls on the carbonate chemistry of coral reef waters: effects of metabolism, wave forcing, sea level, and geomorphology.

PubMed

Falter, James L; Lowe, Ryan J; Zhang, Zhenlin; McCulloch, Malcolm

2013-01-01

We present a three-dimensional hydrodynamic-biogeochemical model of a wave-driven coral-reef lagoon system using the circulation model ROMS (Regional Ocean Modeling System) coupled with the wave transformation model SWAN (Simulating WAves Nearshore). Simulations were used to explore the sensitivity of water column carbonate chemistry across the reef system to variations in benthic reef metabolism, wave forcing, sea level, and system geomorphology. Our results show that changes in reef-water carbonate chemistry depend primarily on the ratio of benthic metabolism to the square root of the onshore wave energy flux as well as on the length and depth of the reef flat; however, they are only weakly dependent on channel geometry and the total frictional resistance of the reef system. Diurnal variations in pCO(2), pH, and aragonite saturation state (Ω(ar)) are primarily dependent on changes in net production and are relatively insensitive to changes in net calcification; however, net changes in pCO(2), pH, and Ω(ar) are more strongly influenced by net calcification when averaged over 24 hours. We also demonstrate that a relatively simple one-dimensional analytical model can provide a good description of the functional dependence of reef-water carbonate chemistry on benthic metabolism, wave forcing, sea level, reef flat morphology, and total system frictional resistance. Importantly, our results indicate that any long-term (weeks to months) net offsets in reef-water pCO(2) relative to offshore values should be modest for reef systems with narrow and/or deep lagoons. Thus, the long-term evolution of water column pCO(2) in many reef environments remains intimately connected to the regional-scale oceanography of offshore waters and hence directly influenced by rapid anthropogenically driven increases in pCO(2).

Unraveling the structure and composition of Varadero Reef, an improbable and imperiled coral reef in the Colombian Caribbean

PubMed Central

Rodríguez, Sara C.; López-Victoria, Mateo; Zapata, Fernando A.; Zea, Sven; Galindo-Martínez, Claudia T.; Iglesias-Prieto, Roberto; Pollock, Joseph; Medina, Mónica

2017-01-01

Coral reefs are commonly associated with oligotrophic, well-illuminated waters. In 2013, a healthy coral reef was discovered in one of the least expected places within the Colombian Caribbean: at the entrance of Cartagena Bay, a highly-polluted system that receives industrial and sewage waste, as well as high sediment and freshwater loads from an outlet of the Magdalena River (the longest and most populated river basin in Colombia). Here we provide the first characterization of Varadero Reef’s geomorphology and biological diversity. We also compare these characteristics with those of a nearby reference reef, Barú Reef, located in an area much less influenced by the described polluted system. Below the murky waters, we found high coral cover of 45.1% (±3.9; up to 80% in some sectors), high species diversity, including 42 species of scleractinian coral, 38 of sponge, three of lobster, and eight of sea urchin; a fish community composed of 61 species belonging to 24 families, and the typical zonation of a Caribbean fringing reef. All attributes found correspond to a reef that, according to current standards should be considered in “good condition”. Current plans to dredge part of Varadero threaten the survival of this reef. There is, therefore, an urgent need to describe the location and characteristics of Varadero as a first step towards gaining acknowledgement of its existence and garnering inherent legal and environmental protections. PMID:29259841

The Influence of Coral Reef Benthic Condition on Associated Fish Assemblages

PubMed Central

Chong-Seng, Karen M.; Mannering, Thomas D.; Pratchett, Morgan S.; Bellwood, David R.; Graham, Nicholas A. J.

2012-01-01

Accumulative disturbances can erode a coral reef’s resilience, often leading to replacement of scleractinian corals by macroalgae or other non-coral organisms. These degraded reef systems have been mostly described based on changes in the composition of the reef benthos, and there is little understanding of how such changes are influenced by, and in turn influence, other components of the reef ecosystem. This study investigated the spatial variation in benthic communities on fringing reefs around the inner Seychelles islands. Specifically, relationships between benthic composition and the underlying substrata, as well as the associated fish assemblages were assessed. High variability in benthic composition was found among reefs, with a gradient from high coral cover (up to 58%) and high structural complexity to high macroalgae cover (up to 95%) and low structural complexity at the extremes. This gradient was associated with declining species richness of fishes, reduced diversity of fish functional groups, and lower abundance of corallivorous fishes. There were no reciprocal increases in herbivorous fish abundances, and relationships with other fish functional groups and total fish abundance were weak. Reefs grouping at the extremes of complex coral habitats or low-complexity macroalgal habitats displayed markedly different fish communities, with only two species of benthic invertebrate feeding fishes in greater abundance in the macroalgal habitat. These results have negative implications for the continuation of many coral reef ecosystem processes and services if more reefs shift to extreme degraded conditions dominated by macroalgae. PMID:22870294

The Habitat of Yellow Mouth Turban Turbo Chrysostomus, Linnaeus, 1758

NASA Astrophysics Data System (ADS)

Soekendarsi, E.

2018-03-01

In general, yellow mouth turban snail Turbo chrysostomus L. 1758 was found in intertidal and coral reef area. This animal is active at night (nocturnal) and settles the coral reef-flats area to do its activity as substrate. In doing its activity, yellow mouth turban snail can be found in the depth of 50 cm until 4 m of tidal area. The adult yellow mouth turban snails are found in great number at intertidal area’s border and at coastal area of coral reef-flats. Methodology that was used in this study is visual analysis (descriptive method), and divided into two parameters which were observed, i.e. abiotic and biotic. Abiotic components that were measured are; Oxygen (ppm), pH, Water Temperature (°C), Salinity (ppm), Ammonia (mg/L), Nitrate (mg/L), Nitrite (mg/L), and Calsium Carbonat (mg/L).Whereas, biotic components that were measured are; substrates, seaweeds, other organisms, and epilithon. The observation’s result of yellow mouth turban snail’s environmental condition showed: abiotic condition of the waters consists of oxygen 3-5 ppm, seawater pH 7-8, seawater temperature 23-26°C, and the salinity of 32-33 ppm. The Habitat of yellow mouth turban snail settled the reef-flats area that is overgrown covered by seaweed Sargassum sp. as the place to do its activity.

Carbonate system parameters of an algal-dominated reef along West Maui

NASA Astrophysics Data System (ADS)

Prouty, Nancy G.; Yates, Kimberly K.; Smiley, Nathan; Gallagher, Chris; Cheriton, Olivia; Storlazzi, Curt D.

2018-04-01

Constraining coral reef metabolism and carbon chemistry dynamics are fundamental for understanding and predicting reef vulnerability to rising coastal CO2 concentrations and decreasing seawater pH. However, few studies exist along reefs occupying densely inhabited shorelines with known input from land-based sources of pollution. The shallow coral reefs off Kahekili, West Maui, are exposed to nutrient-enriched, low-pH submarine groundwater discharge (SGD) and are particularly vulnerable to the compounding stressors from land-based sources of pollution and lower seawater pH. To constrain the carbonate chemistry system, nutrients and carbonate chemistry were measured along the Kahekili reef flat every 4 h over a 6-day sampling period in March 2016. Abiotic process - primarily SGD fluxes - controlled the carbonate chemistry adjacent to the primary SGD vent site, with nutrient-laden freshwater decreasing pH levels and favoring undersaturated aragonite saturation (Ωarag) conditions. In contrast, diurnal variability in the carbonate chemistry at other sites along the reef flat was driven by reef community metabolism. Superimposed on the diurnal signal was a transition during the second sampling period to a surplus of total alkalinity (TA) and dissolved inorganic carbon (DIC) compared to ocean endmember TA and DIC measurements. A shift from positive net community production and positive net community calcification to negative net community production and negative net community calcification was identified. This transition occurred during a period of increased SGD-driven nutrient loading, lower wave height, and reduced current speeds. This detailed study of carbon chemistry dynamics highlights the need to incorporate local effects of nearshore oceanographic processes into predictions of coral reef vulnerability and resilience.

Evaluating Environmental Effects of Dredged Material Management Alternatives: A Technical Framework

DTIC Science & Technology

1992-11-01

fluctuating flows and tamperatures would be difficult. Biological processes such as nitrification, nutrient catabolism, and photosynthesis are important...communities as tidal flats, seagrass meadows, oyster beds, clam flats, fishing reefs, and freshwater aquatic plant establishment. The bottom of many

Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse

PubMed Central

den Haan, Joost; Huisman, Jef; Brocke, Hannah J.; Goehlich, Henry; Latijnhouwers, Kelly R. W.; van Heeringen, Seth; Honcoop, Saskia A. S.; Bleyenberg, Tanja E.; Schouten, Stefan; Cerli, Chiara; Hoitinga, Leo; Vermeij, Mark J. A.; Visser, Petra M.

2016-01-01

Terrestrial runoff after heavy rainfall can increase nutrient concentrations in waters overlying coral reefs that otherwise experience low nutrient levels. Field measurements during a runoff event showed a sharp increase in nitrate (75-fold), phosphate (31-fold) and ammonium concentrations (3-fold) in waters overlying a fringing reef at the island of Curaçao (Southern Caribbean). To understand how benthic reef organisms make use of such nutrient pulses, we determined ammonium, nitrate and phosphate uptake rates for one abundant coral species, turf algae, six macroalgal and two benthic cyanobacterial species in a series of laboratory experiments. Nutrient uptake rates differed among benthic functional groups. The filamentous macroalga Cladophora spp., turf algae and the benthic cyanobacterium Lyngbya majuscula had the highest uptake rates per unit biomass, whereas the coral Madracis mirabilis had the lowest. Combining nutrient uptake rates with the standing biomass of each functional group on the reef, we estimated that the ammonium and phosphate delivered during runoff events is mostly taken up by turf algae and the two macroalgae Lobophora variegata and Dictyota pulchella. Our results support the often proposed, but rarely tested, assumption that turf algae and opportunistic macroalgae primarily benefit from episodic inputs of nutrients to coral reefs. PMID:27353576

Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse

NASA Astrophysics Data System (ADS)

den Haan, Joost; Huisman, Jef; Brocke, Hannah J.; Goehlich, Henry; Latijnhouwers, Kelly R. W.; van Heeringen, Seth; Honcoop, Saskia A. S.; Bleyenberg, Tanja E.; Schouten, Stefan; Cerli, Chiara; Hoitinga, Leo; Vermeij, Mark J. A.; Visser, Petra M.

2016-06-01

Terrestrial runoff after heavy rainfall can increase nutrient concentrations in waters overlying coral reefs that otherwise experience low nutrient levels. Field measurements during a runoff event showed a sharp increase in nitrate (75-fold), phosphate (31-fold) and ammonium concentrations (3-fold) in waters overlying a fringing reef at the island of Curaçao (Southern Caribbean). To understand how benthic reef organisms make use of such nutrient pulses, we determined ammonium, nitrate and phosphate uptake rates for one abundant coral species, turf algae, six macroalgal and two benthic cyanobacterial species in a series of laboratory experiments. Nutrient uptake rates differed among benthic functional groups. The filamentous macroalga Cladophora spp., turf algae and the benthic cyanobacterium Lyngbya majuscula had the highest uptake rates per unit biomass, whereas the coral Madracis mirabilis had the lowest. Combining nutrient uptake rates with the standing biomass of each functional group on the reef, we estimated that the ammonium and phosphate delivered during runoff events is mostly taken up by turf algae and the two macroalgae Lobophora variegata and Dictyota pulchella. Our results support the often proposed, but rarely tested, assumption that turf algae and opportunistic macroalgae primarily benefit from episodic inputs of nutrients to coral reefs.

Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse.

PubMed

den Haan, Joost; Huisman, Jef; Brocke, Hannah J; Goehlich, Henry; Latijnhouwers, Kelly R W; van Heeringen, Seth; Honcoop, Saskia A S; Bleyenberg, Tanja E; Schouten, Stefan; Cerli, Chiara; Hoitinga, Leo; Vermeij, Mark J A; Visser, Petra M

2016-06-29

Terrestrial runoff after heavy rainfall can increase nutrient concentrations in waters overlying coral reefs that otherwise experience low nutrient levels. Field measurements during a runoff event showed a sharp increase in nitrate (75-fold), phosphate (31-fold) and ammonium concentrations (3-fold) in waters overlying a fringing reef at the island of Curaçao (Southern Caribbean). To understand how benthic reef organisms make use of such nutrient pulses, we determined ammonium, nitrate and phosphate uptake rates for one abundant coral species, turf algae, six macroalgal and two benthic cyanobacterial species in a series of laboratory experiments. Nutrient uptake rates differed among benthic functional groups. The filamentous macroalga Cladophora spp., turf algae and the benthic cyanobacterium Lyngbya majuscula had the highest uptake rates per unit biomass, whereas the coral Madracis mirabilis had the lowest. Combining nutrient uptake rates with the standing biomass of each functional group on the reef, we estimated that the ammonium and phosphate delivered during runoff events is mostly taken up by turf algae and the two macroalgae Lobophora variegata and Dictyota pulchella. Our results support the often proposed, but rarely tested, assumption that turf algae and opportunistic macroalgae primarily benefit from episodic inputs of nutrients to coral reefs.

New records of Bodotriidae (Crustacea: Cumacea) from Puerto Rico with descriptions of three new species.

PubMed

Petrescu, Iorgu; Chatterjee, Tapas; Schizas, Nikolaos V

2014-10-20

In a continuing effort to describe the cumacean fauna of Puerto Rico we describe three new species of Bodotriidae, a family that has never been reported from Puerto Rico before.  While finding and describing new microcrustacean species may not be an impossible task, if there is available taxonomic expertise, the currently described species were found in large numbers within a short distance from the Marine Laboratories of the University of Puerto Rico where the local reefs have been studied for over half a century, highlighting the large gaps that exist in our estimates of Caribbean marine diversity.  The three new species, Cyclaspis gurui sp. nov., Cyclaspis mariae sp. nov. and Vaunthompsonia budaii sp. nov. are reported from a fringing reef off La Parguera, southwest coast of Puerto Rico and Vaunthompsonia cristata Bate, 1858 represents a new record for Puerto Rico from the mesophotic reefs.

Coral Reefs on the Edge? Carbon Chemistry on Inshore Reefs of the Great Barrier Reef

PubMed Central

Uthicke, Sven; Furnas, Miles; Lønborg, Christian

2014-01-01

While increasing atmospheric carbon dioxide (CO2) concentration alters global water chemistry (Ocean Acidification; OA), the degree of changes vary on local and regional spatial scales. Inshore fringing coral reefs of the Great Barrier Reef (GBR) are subjected to a variety of local pressures, and some sites may already be marginal habitats for corals. The spatial and temporal variation in directly measured parameters: Total Alkalinity (TA) and dissolved inorganic carbon (DIC) concentration, and derived parameters: partial pressure of CO2 (pCO2); pH and aragonite saturation state (Ωar) were measured at 14 inshore reefs over a two year period in the GBR region. Total Alkalinity varied between 2069 and 2364 µmol kg−1 and DIC concentrations ranged from 1846 to 2099 µmol kg−1. This resulted in pCO2 concentrations from 340 to 554 µatm, with higher values during the wet seasons and pCO2 on inshore reefs distinctly above atmospheric values. However, due to temperature effects, Ωar was not further reduced in the wet season. Aragonite saturation on inshore reefs was consistently lower and pCO2 higher than on GBR reefs further offshore. Thermodynamic effects contribute to this, and anthropogenic runoff may also contribute by altering productivity (P), respiration (R) and P/R ratios. Compared to surveys 18 and 30 years ago, pCO2 on GBR mid- and outer-shelf reefs has risen at the same rate as atmospheric values (∼1.7 µatm yr−1) over 30 years. By contrast, values on inshore reefs have increased at 2.5 to 3 times higher rates. Thus, pCO2 levels on inshore reefs have disproportionately increased compared to atmospheric levels. Our study suggests that inshore GBR reefs are more vulnerable to OA and have less buffering capacity compared to offshore reefs. This may be caused by anthropogenically induced trophic changes in the water column and benthos of inshore reefs subjected to land runoff. PMID:25295864

Potential release of PCBs from plastic scientific gear to fringing coral reef sediments in the Gulf of Thailand

NASA Astrophysics Data System (ADS)

Hong, Gi Hoon; Kim, Chang Joon; Yeemin, Thamasak; Siringan, Fernando P.; Zhang, Jing; Lee, Hyun Mi; Choi, Ki Young; Yang, Dong Beom; Ahn, Yu Whan; Ryu, Joo Hyung

2013-11-01

A status on environmental contamination of the coral reefs on the islands of Samui and Katen of the western part of the Gulf of Thailand was investigated with a preliminarily analysis of bottom sediment samples. Coral reef bed sediments were characterized as relatively uncontaminated by human activities in terms of selected metals and PCBs. Potential release of PCBs to the ambient seawater from scientific equipment made of plastic materials placed into the coral reef waters for an extended period was investigated because the sedimentary PCBs concentrations were very low in the region. Eight plastics - acrylic, mono cast nylon, polycarbonate, polyethylene, polypropylene, ivory and grey-colored polyvinyl chloride, and Teflon® - were subjected to leaching in seawater after being thoroughly washed with laboratory detergent and distilled water. All plastics were found to release PCBs at highly variable rates to seawater in the initial 60 days. Grey-colored PVC, Teflon, and polycarbonate after rinsing with n-hexane were found to release less than 50ng PCBs/kg of plastics and they could therefore be used to make scientific equipment to be deployed on the relatively PCBs-free coral reef beds.

Eddy covariance measurement of the spatial heterogeneity of surface energy exchanges over Heron Reef, Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

MacKellar, M.; McGowan, H. A.; Phinn, S. R.

2011-12-01

Coral reefs cover 2.8 to 6.0 x 105 km2 of the Earth's surface and are warm, shallow regions that are believed to contribute enhanced sensible and latent heat to the atmosphere, relative to the surrounding ocean. To predict the impact of climate variability on coral reefs and their weather and climate including cloud, winds, rainfall patterns and cyclone genesis, accurate parameterisation of air-sea energy exchanges over coral reefs is essential. This is also important for the parameterisation and validation of regional to global scale forecast models to improve prediction of tropical and sub-tropical marine and coastal weather. Eddy covariance measurements of air-sea fluxes over coral reefs are rare due to the complexities of installing instrumentation over shallow, tidal water. Consequently, measurements of radiation and turbulent flux data for coral reefs have been captured remotely (satellite data) or via single measurement sites downwind of coral reefs (e.g. terrestrial or shipboard instrumentation). The resolution of such measurements and those that have been made at single locations on reefs may not capture the spatial heterogeneity of surface-atmosphere energy exchanges due to the different geomorphic and biological zones on coral reefs. Accordingly, the heterogeneity of coral reefs with regard to substrate, benthic communities and hydrodynamic processes are not considered in the characterization of the surface radiation energy flux transfers across the water-atmosphere interface. In this paper we present a unique dataset of concurrent in situ eddy covariance measurements made on instrumented pontoons of the surface energy balance over different geomorphic zones of a coral reef (shallow reef flat, shallow and deep lagoons). Significant differences in radiation transfers and air-sea turbulent flux exchanges over the reef were highlighted, with higher Bowen ratios over the shallow reef flat. Increasing wind speed was shown to increase flux divergence between sites to the extent that under unstable, south-easterly Trade Winds the net flux of heat was positive and negative over different geomorphic zones. The surface drag coefficient ranged from 1 to 2.5 x 10-3, with no significant difference between sites. Results highlight the spatial variation of air-sea energetics across a lagoonal platform reef in response to local meteorology, hydrodynamics and benthic/substrate cover.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kayanne, Hajime; Suzuki, Atsushi; Saito, Hiroshi

Coral reefs are considered to be a source of atmospheric carbon dioxide because of their high calcium carbonate production and low net primary production. This was tested by direct measurement of diurnal changes in the partial pressure of carbon dioxide (P{sub CO2}) in reef waters during two 3-day periods, one in March 1993 and one in March 1994, on Shiraho reef of the Ryukyu Islands, Japan. Although the P{sub CO2} values in reef waters exhibited large diurnal changes ranging from 160 to 520 microatmospheres, they indicate that the reef flat area is a net sink for atmospheric carbon dioxide. Thismore » suggests that the net organic production rate of the reef community exceeded its calcium carbonate production rate during the observation periods. 16 refs., 2 figs., 1 tab.« less

Origin of Silurian reefs in the Alexander Terrane of southeastern Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soja, C.M.

1991-04-01

Lower to Upper Silurian (upper Llandovery-Ludlow) limestones belonging to the Heceta Formation record several episodes of reef growth in the Alexander terrane of southeastern Alaska. As the oldest carbonates of wide-spread distribution in the region, the Heceta limestones represent the earliest development of a shallow-marine platform within the Alexander arc and the oldest foundation for reef evolution. These deposits provide important insights into the dynamic processes, styles, and bathymetry associated with reef growth in tectonically active oceanic islands. Massive stromatoporoids, corals, and red algae are preserved in fragmental rudstones and represent a fringing reef that formed at the seaward edgemore » of the incipient marine shelf. Accessory constituents in this reef include crinoids and the cyanobacterium Girvanella. Small biostromes were constructed by ramose corals and stromatoporoids on oncolitic substrates in backreef or lagoonal environments. These buildups were associated with low-diversity assemblages of brachiopods and with gastropods, amphiporids, calcareous algae and cyanobacteria. Microbial boundstones reflect the widespread encrustation of cyanobacteria and calcified microproblematica on shelly debris as stromatolitic mats that resulted in the development of a stromatactoid-bearing mud mound and a barrier reef complex. Epiphytaceans, other microbes, and aphrosalpingid sponges were the primary frame-builders of the barrier reefs. These buildups attained significant relief at the shelf margin and shed detritus as slumped blocks and debris flows into deep-water sites along the slope. The similarity of these stromatolitic-aphrosalpingid reefs to those from Siluro-Devonian strata of autochthonous southwestern Alaska suggests paleobiogeographic ties of the Alexander terrane to cratonal North America during the Silurian.« less

Book review of Littler DM. Littler MM (2000) Caribbean Reef Plants An Identification Guide to the Reef Plants of the Caribbean, Bahamas, Florida and Gulf of Mexico

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

Seabirds supply nitrogen to reef-building corals on remote Pacific islets.

PubMed

Lorrain, Anne; Houlbrèque, Fanny; Benzoni, Francesca; Barjon, Lucie; Tremblay-Boyer, Laura; Menkes, Christophe; Gillikin, David P; Payri, Claude; Jourdan, Hervé; Boussarie, Germain; Verheyden, Anouk; Vidal, Eric

2017-06-16

Seabirds concentrate nutrients from large marine areas on their nesting islands playing an important ecological role in nutrient transfer between marine and terrestrial ecosystems. Here we investigate the role of guano on corals reefs across scales by analyzing the stable nitrogen isotopic (δ 15 N) values of the scleractinian coral Pocillopora damicornis on fringing reefs around two Pacific remote islets with large seabird colonies. Marine stations closest to the seabird colonies had higher nitrate + nitrite concentrations compared to more distant stations. Coral and zooxanthellae δ 15 N values were also higher at these sites, suggesting that guano-derived nitrogen is assimilated into corals and contributes to their nitrogen requirements. The spatial extent of guano influence was however restricted to a local scale. Our results demonstrate that seabird-derived nutrients not only spread across the terrestrial ecosystem, but also affect components of the adjacent marine ecosystem. Further studies are now needed to assess if this nutrient input has a positive or negative effect for corals. Such studies on remote islets also open fresh perspectives to understand how nutrients affect coral reefs isolated from other anthropogenic stressors.

Baseline data for evaluating development trajectory and provision of ecosystem services of created fringing oyster reefs in Vermilion Bay, Louisiana

USGS Publications Warehouse

La Peyre, Megan K.; Schwarting, Lindsay; Miller, Shea

2013-01-01

Understanding the time frame in which ecosystem services (that is, water quality maintenance, shoreline protection, habitat provision) are expected to be provided is important when restoration projects are being designed and implemented. Restoration of three-dimensional shell habitats in coastal Louisiana and elsewhere presents a valuable and potentially self-sustaining approach to providing shoreline protection, enhancing nekton habitat, and providing water quality maintenance. As with most restoration projects, the development of expected different ecosystem services often occurs over varying time frames, with some services provided immediately and others taking longer to develop. This project was designed initially to compare the provision and development of ecosystem services by created fringing shoreline reefs in subtidal and intertidal environments in Vermilion Bay, Louisiana. Specifically, the goal was to test the null hypothesis that over time, the oyster recruitment and development of a sustainable oyster reef community would be similar at both intertidal and subtidal reef bases, and these sustainable reefs would in time provide similar shoreline stabilization, nekton habitat, and water quality services over similar time frames. Because the ecosystem services hypothesized to be provided by oyster reefs reflect long-term processes, fully testing the above-stated null hypothesis requires a longer-time frame than this project allowed. As such, this project was designed to provide the initial data on reef development and provision of ecosystem services, to identify services that may develop immediately, and to provide baseline data to allow for longer-term follow up studies tracking reef development over time. Unfortunately, these initially created reef bases (subtidal, intertidal) were not constructed as planned because of the Deepwater Horizon oil spill in April 2010, which resulted in reef duplicates being created 6 months apart. Further confounding the project were additional construction and restoration projects along the same shorelines which occurred between 2011 and June 2012. Because of constant activity near and around the reefs and continuing construction, development trajectories could not be compared among reef types at this time. This report presents the data collected at the sites over 3 years (2010–2012), describing only conditions and trends. In addition, these data provide an extensive and detailed dataset documenting initial conditions and initial ecosystem changes which will prove valuable in future data collection and analyses of reef development at this site. Data collection characterized the local water quality conditions (salinity, temperature, total suspended sediments, dissolved oxygen, chlorophyll a), adjacent marsh vegetation, soils, and shoreline position along the project shoreline at Vermilion Bay. During the study, marsh vegetation and soil characteristics were similar across the study area and did not change over time. Shoreline movement indicated shoreline loss at all sites, which varied by reefs. Water quality conditions followed expected seasonal patterns for this region, and no significant nonseasonal changes were measured throughout the study period. Despite oyster recruitment in fall 2010 and 2011, few if any oysters survived from the 2010 year class to 2012. At the last sampling of this project, some oysters recruited in fall 2011 survived through 2012, resulting in an on-reef density of 18.3 ± 2.1 individuals per square meter (mean size: 85.6 ± 2.2 millimeters). Because project goals were to compare reef development and provision of ecosystem services over time, as well as many of the processes identified for monitoring reflect long-term processes, results and data are presented only qualitatively, and trends or observations should be interpreted cautiously at this point. Measurable system responses to reef establishment require more time than was available for this study. These data provide a valuable baseline that can be ultimately used to help inform site selections for future restoration projects as well to further investigate the development trajectories of ecosystem provision of created reefs in this region.

Breathing of a coral cay: Tracing tidally driven seawater recirculation in permeable coral reef sediments

NASA Astrophysics Data System (ADS)

Santos, Isaac R.; Erler, Dirk; Tait, Douglas; Eyre, Bradley D.

2010-12-01

Coral reefs are characterized by high gross productivity in spite of low nutrient concentrations. This apparent paradox may be partially reconciled if seawater recirculation in permeable sediments over large (meters) and long (hours to days) scales is an important source of recycled nitrogen and phosphorus to coral reefs. In this paper we use radon (222Rn, a natural tracer) to quantify tidally driven pore water (or groundwater) exchange between (1) an offshore coral cay island and its fringing reef lagoon and (2) a reef lagoon and the surrounding ocean. As seawater infiltrates Heron Island at high tide, it acquires a radon signal that can be detected when pore waters emerge from carbonate sands at low tide. A nonsteady state model indicated that vertical pore water upwelling rates (or saline submarine groundwater discharge) were >40 cm/d within the reef lagoon and >100 cm/d outside the lagoon at low tide. Within the lagoon, tidal pumping and temperature-driven convection were the main driving forces of pore water advection. At low tide, the reef lagoon level is about 1 m higher than the surrounding ocean. As a result, a steep hydraulic gradient develops at the reef edge, driving unidirectional filtration through the reef framework. Groundwaters were highly enriched in nitrate (average of 530 μmol, likely influenced by bird guano) relative to lagoon waters (1.9 μmol). Rough but conservative estimates indicated that groundwater-derived nitrate fluxes (7.9 mmol/m2/d) can replace the entire lagoon nitrate inventory every <19 days. We speculate that as offshore coral islands "breath" (inhale seawater at high tide and exhale groundwater at low tide), they release nutrients that lead to sustained productivity within coral reefs.

Spatiotemporal variations in CO2 flux in a fringing reef simulated using a novel carbonate system dynamics model

NASA Astrophysics Data System (ADS)

Watanabe, A.; Yamamoto, T.; Nadaoka, K.; Maeda, Y.; Miyajima, T.; Tanaka, Y.; Blanco, A. C.

2013-03-01

A carbonate system dynamics (CSD) model was developed in a fringing reef on the east coast of Ishigaki Island, southwest Japan, by incorporating organic and inorganic carbon fluxes (photosynthesis and calcification), air-sea gas exchanges, and benthic cover of coral and seagrass into a three-dimensional hydrodynamic model. The CSD model could reproduce temporal variations in dissolved inorganic carbon (DIC) and total alkalinity in coral zones, but not in seagrass meadows. The poor reproduction in seagrass meadows can be attributed to significant contributions of submarine groundwater discharge as well as misclassification of remotely sensed megabenthos in this area. In comparison with offshore areas, the reef acted as a CO2 sink during the observation period when it was averaged over 24 h. The CSD model also indicated large spatiotemporal differences in the carbon dioxide (CO2) sink/source, possibly related to hydrodynamic features such as effective offshore seawater exchange and neap/spring tidal variation. This suggests that the data obtained from a single point observation may lead to misinterpretation of the overall trend and thus should be carefully considered. The model analysis also showed that the advective flux of DIC from neighboring grids is several times greater than local biological flux of DIC and is three orders of magnitude greater than the air-sea gas flux at the coral zone. Sensitivity tests in which coral or seagrass covers were altered revealed that the CO2 sink potential was much more sensitive to changes in coral cover than seagrass cover.

Community-Based Environmental Education in the Fishing Villages of Tuticorin and Its Role in Conservation of the Environment

ERIC Educational Resources Information Center

Patterson, Jamila; Linden, Eva; Edward, J. K. Patterson; Wilhelmsson, Dan; Lofgren, Inger

2009-01-01

The coastal town of Tuticorin is situated in the southern part of the Gulf of Mannar Marine National Park on the Southeastern Indian coast. The four islands off the Tuticorin coast are fringed by corals reefs and seagrass beds. Destructive fishing methods including blast fishing, near-shore trawling, coral mining, sedimentation and pollution have,…

Predictable spatial escapes from herbivory: how do these affect the evolution of herbivore resistance in tropical marine communities?

PubMed

Hay, Mark E

1984-11-01

Between-habitat differences in macrophyte consumption by herbivorous fishes were examined on three Caribbean and two Indian Ocean coral reefs. Transplanted sections of seagrasses were used as a bioassay to compare removal rates in reef-slope, reef-flat, sand-plain, and lagoon habitats. Herbivore susceptibility of fifty-two species of seaweeds from these habitats was also measured in the field. Seagrass consumption on shallow reef slopes was always significantly greater than on shallow reef flats, deep sand plains, or sandy lagoons. Reef-slope seaweeds were consistently resistant to herbivory while reef-flat seaweeds were consistently very susceptible to herbivory. This pattern supports the hypothesis that defenses against herbivores are costly in terms of fitness and are selected against in habitats with predictably low rates of herbivory.Sand-plain and lagoon seaweeds showed a mixed response when placed in habitats with high herbivore pressure; most fleshy red seaweeds were eaten rapidly, most fleshy green seaweeds were eaten at intermediate rates, and most calcified green seaweeds were avoided or eaten at very low rates. Differences in susceptibility between red and green seaweeds from sand-plain or lagoon habitats may result from differential competitive pressures experienced by these seaweed groups or from the differential probability of being encountered by herbivores. The susceptibility of a species to removal by herbivorous fishes was relatively consistent between reefs. Preferences of the sea urchin Diadema antillarum were also similar to those of the fish guilds.Unique secondary metabolites were characteristic of almost all of the most herbivore resistant seaweeds. However, some of the herbivore susceptible species also contain chemicals that have been proposed as defensive compounds. Genera such as Sargassum, Turbinaria, Thalassia, Halodule, and Thalassodendron, which produce polyphenolics or phenolic acids, were consumed at high to intermediate rates, suggesting that these compounds are not effective deterrents for some herbivorous fishes. Additionally, potential for the production of the compounds caulerpin, caulerpicin and caulerpenyne in various species of Caulerpa did not assure low susceptibility to herbivory.Heavily calcified seaweeds were very resistant to herbivory, but all of these species also produce toxic secondary metabolites which makes it difficult to distinguish between the effects of morphological and chemical defenses. Predictions of susceptibility to herbivory based on algal toughness and external morphology were of limited value in explaining differing resistances to herbivory.

Near-surface enrichment of zooplankton over a shallow back reef: implications for coral reef food webs

NASA Astrophysics Data System (ADS)

Alldredge, A. L.; King, J. M.

2009-12-01

Zooplankton were 3-8 times more abundant during the day near the surface than elsewhere in the water column over a 1-2.4 m deep back reef in Moorea, French Polynesia. Zooplankton were also significantly more abundant near the surface at night although gradients were most pronounced under moonlight. Zooplankton in a unidirectional current became concentrated near the surface within 2 m of departing a well-mixed trough immediately behind the reef crest, indicating that upward swimming behavior, rather than near-bottom depletion by reef planktivores, was the proximal cause of these gradients. Zooplankton were highly enriched near the surface before and after a full lunar eclipse but distributed evenly throughout the water column during the eclipse itself supporting light as a proximal cue for the upward swimming behavior of many taxa. This is the first investigation of the vertical distribution of zooplankton over a shallow back reef typical of island barrier reef systems common around the world. Previous studies on deeper fringing reefs found zooplankton depletion near the bottom but no enrichment aloft. In Moorea, where seawater is continuously recirculated out the lagoon and back across the reef crest onto the back reef, selection for upward swimming behavior may be especially strong, because the surface serves both as a refuge from predation and an optimum location for retention within the reef system. Planktivorous fish and corals that can forage or grow even marginally higher in the water column might have a substantial competitive advantage over those nearer the bottom on shallow reefs. Zooplankton abundance varied more over a few tens of centimeters vertical distance than it did between seasons or even between day and night indicating that great care must be taken to accurately assess the availability of zooplankton as food on shallow reefs.

Keep up or drown: adjustment of western Pacific coral reefs to sea-level rise in the 21st century

PubMed Central

van Woesik, R.; Golbuu, Y.; Roff, G.

2015-01-01

Since the Mid-Holocene, some 5000 years ago, coral reefs in the Pacific Ocean have been vertically constrained by sea level. Contemporary sea-level rise is releasing these constraints, providing accommodation space for vertical reef expansion. Here, we show that Porites microatolls, from reef-flat environments in Palau (western Pacific Ocean), are ‘keeping up’ with contemporary sea-level rise. Measurements of 570 reef-flat Porites microatolls at 10 locations around Palau revealed recent vertical skeletal extension (78±13 mm) over the last 6–8 years, which is consistent with the timing of the recent increase in sea level. We modelled whether microatoll growth rates will potentially ‘keep up’ with predicted sea-level rise in the near future, based upon average growth, and assuming a decline in growth for every 1°C increase in temperature. We then compared these estimated extension rates with rates of sea-level rise under four Representative Concentration Pathways (RCPs). Our model suggests that under low–mid RCP scenarios, reef-coral growth will keep up with sea-level rise, but if greenhouse gas concentrations exceed 670 ppm atmospheric CO2 levels and with +2.2°C sea-surface temperature by 2100 (RCP 6.0 W m−2), our predictions indicate that Porites microatolls will be unable to keep up with projected rates of sea-level rise in the twenty-first century. PMID:26587277

Identifying carbon sources and trophic position of coral reef fishes using diet and stable isotope (δ15N and δ13C) analyses in two contrasted bays in Moorea, French Polynesia

NASA Astrophysics Data System (ADS)

Letourneur, Y.; Lison de Loma, T.; Richard, P.; Harmelin-Vivien, M. L.; Cresson, P.; Banaru, D.; Fontaine, M.-F.; Gref, T.; Planes, S.

2013-12-01

Stable isotope ratios (δ15N and δ13C) and diet of three fish species, Stegastes nigricans, Chaetodon citrinellus and Epinephelus merra, were analyzed on the fringing coral reefs of two bays that are differentially exposed to river runoff on Moorea Island, French Polynesia. S. nigricans and C. citrinellus relied mostly on turf algae and presented similar trophic levels and δ15N values, whereas E. merra fed on large invertebrates (crabs and shrimps) and had higher trophic levels and δ15N values. Discrepancies existed between stomach content and stable isotope analyses for the relative importance of food items. Bayesian mixing models indicated that sedimented organic matter was also an important additional food for S. nigricans and C. citrinellus, and fishes for E. merra. The main sources of organic matter involved in the food webs ending with these species were algal turfs and surface sediments, while water particulate organic matter was barely used. Significant spatial differences in C and N isotopic ratios for sources and fishes were found within and between bays. Lower 13C and higher 15N values were observed for various compartments of the studied trophic network at the end of each bay than at the entrance. Differences were observed between bays, with organic sources and consumers being, on average, slightly more 13C-depleted and 15N-enriched in Cook's Bay than in Opunohu Bay, linked with a higher mean annual flow of the river at Cook's Bay. Our results suggest that rivers bring continental material into these two bays, which is partly incorporated into the food webs of fringing coral reefs at least close to river mouths. Thus, continental inputs can influence the transfer of organic matter within coral reef food webs depending on the diet of organisms.

Characterization of dissolved organic matter in a coral reef ecosystem subjected to anthropogenic pressures (La Réunion Island, Indian Ocean) using multi-dimensional fluorescence spectroscopy.

PubMed

Tedetti, Marc; Cuet, Pascale; Guigue, Catherine; Goutx, Madeleine

2011-05-01

La Saline fringing reef is the most important coral reef complex of La Réunion Island (southwestern Indian Ocean; 21°07'S, 55°32'E). This ecosystem is subjected to anthropogenic pressures through river inputs and submarine groundwater discharge (SGD). The goal of this study was to characterize the pool of fluorescent dissolved organic matter (FDOM) in different water bodies of La Saline fringing reef ecosystem using excitation-emission matrix (EEM) spectrofluorometry. From EEMs, we identified the different fluorophores by the peak picking technique and determined two fluorescence indices issued from the literature: the humification index (HIX) and the biological index (BIX). The main known fluorophores were present within the sample set: humic-like A, humic-like C, marine humic-like M, tryptophan-like T1 and T2, and tyrosine-like B1 and B2. In some samples, unknown fluorophores ("U") were also detected. The surface oceanic waters located beyond the reef front displayed a typical oligotrophic marine signature, with a dominance of autochthonous/biological material (presence of peaks: T1>B1>A>T2>M>C; HIX: 0.9±0.4; BIX: 2.3±1.1). In the reef waters, the autochthonous/biological fingerprint also dominated even though the content in humic substances was higher (same relative distribution of peaks; HIX: 1.6±0.6; BIX: 1.0±0.1). Sedimentary and volcanic SGD showed very different patterns with a strong terrestrial source for the former (A>T1>C>B1 and A>C>B1; HIX: 9.8±2.0; BIX: 0.8±0.0) and a weak terrestrial source for the latter (A>B1>U3>B2>C and A>U4>C; HIX: 2.4±0.3; BIX: 0.9±0.0). In the Hermitage River, both humic substances and protein-like material were abundant (T1>A>U5>B1>C>B2; HIX: 2.3; BIX: 1.4). We provide evidences for the presence of anthropogenic DOM in some of these water bodies. Some oceanic samples (presence of peaks U1 and U2) were likely contaminated by oil-derived PAHs from ships navigating around the reef front, whereas the Hermitage River was highly impacted by sewage effluents, numerous in this coastal area of La Réunion Island. We conclude that multi-dimensional fluorescence spectroscopy (EEM) coupled to the determination of HIX and BIX is a good tool for assessing the origin and distribution of DOM in the coral reef ecosystems submitted to anthropogenic impacts. Copyright © 2011 Elsevier B.V. All rights reserved.

A Bayesian-Based System to Assess Wave-Driven Flooding Hazards on Coral Reef-Lined Coasts

NASA Astrophysics Data System (ADS)

Pearson, S. G.; Storlazzi, C. D.; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-12-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, "XBNH") was used to create a large synthetic database for use in a "Bayesian Estimator for Wave Attack in Reef Environments" (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.