Flight movement inventory : SAGE-AERO2K

DOT National Transportation Integrated Search

2004-04-28

A global air traffic emissions database is an essential tool for both policy makers and climate change : scientists. Since the last comprehensive aircraft emissions inventories were developed in 1992, an : update is necessary. This need is being addr...

A precipitation database of station-based daily and monthly measurements for West Africa: Overview, quality control and harmonization

NASA Astrophysics Data System (ADS)

Bliefernicht, Jan; Waongo, Moussa; Annor, Thompson; Laux, Patrick; Lorenz, Manuel; Salack, Seyni; Kunstmann, Harald

2017-04-01

West Africa is a data sparse region. High quality and long-term precipitation data are often not readily available for applications in hydrology, agriculture, meteorology and other needs. To close this gap, we use multiple data sources to develop a precipitation database with long-term daily and monthly time series. This database was compiled from 16 archives including global databases e.g. from the Global Historical Climatology Network (GHCN), databases from research projects (e.g. the AMMA database) and databases of the national meteorological services of some West African countries. The collection consists of more than 2000 precipitation gauges with measurements dating from 1850 to 2015. Due to erroneous measurements (e.g. temporal offsets, unit conversion errors), missing values and inconsistent meta-data, the merging of this precipitation dataset is not straightforward and requires a thorough quality control and harmonization. To this end, we developed geostatistical-based algorithms for quality control of individual databases and harmonization to a joint database. The algorithms are based on a pairwise comparison of the correspondence of precipitation time series in dependence to the distance between stations. They were tested for precipitation time series from gages located in a rectangular domain covering Burkina Faso, Ghana, Benin and Togo. This harmonized and quality controlled precipitation database was recently used for several applications such as the validation of a high resolution regional climate model and the bias correction of precipitation projections provided the Coordinated Regional Climate Downscaling Experiment (CORDEX). In this presentation, we will give an overview of the novel daily and monthly precipitation database and the algorithms used for quality control and harmonization. We will also highlight the quality of global and regional archives (e.g. GHCN, GSOD, AMMA database) in comparison to the precipitation databases provided by the national meteorological services.

An introduction to global mental health.

PubMed

Patterson, Jo Ellen; Edwards, Todd M

2018-06-01

In general, readers of Families, Systems, and Health (FSH) practice in high income countries and in settings that have adequate resources. Providers can usually count on being able to offer the material resources and skills that patients need to heal. This bounty of resources is in contrast to many clinics in low- and middle-income countries (LMICs). The need for mental health services in LMICs is significant and growing because of upheaval caused by war and other disasters. The topics in this issue talk about the obstacles to obtaining mental health services, trends in global mental health, and FSH in the global mental health movement. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

GMDD: a database of GMO detection methods.

PubMed

Dong, Wei; Yang, Litao; Shen, Kailin; Kim, Banghyun; Kleter, Gijs A; Marvin, Hans J P; Guo, Rong; Liang, Wanqi; Zhang, Dabing

2008-06-04

Since more than one hundred events of genetically modified organisms (GMOs) have been developed and approved for commercialization in global area, the GMO analysis methods are essential for the enforcement of GMO labelling regulations. Protein and nucleic acid-based detection techniques have been developed and utilized for GMOs identification and quantification. However, the information for harmonization and standardization of GMO analysis methods at global level is needed. GMO Detection method Database (GMDD) has collected almost all the previous developed and reported GMOs detection methods, which have been grouped by different strategies (screen-, gene-, construct-, and event-specific), and also provide a user-friendly search service of the detection methods by GMO event name, exogenous gene, or protein information, etc. In this database, users can obtain the sequences of exogenous integration, which will facilitate PCR primers and probes design. Also the information on endogenous genes, certified reference materials, reference molecules, and the validation status of developed methods is included in this database. Furthermore, registered users can also submit new detection methods and sequences to this database, and the newly submitted information will be released soon after being checked. GMDD contains comprehensive information of GMO detection methods. The database will make the GMOs analysis much easier.

Needed: Global Collaboration for Comparative Research on Cities and Health

PubMed Central

Gusmano, Michael K.; Rodwin, Victor G.

2016-01-01

Over half of the world’s population lives in cities and United Nations (UN) demographers project an increase of 2.5 billion more urban dwellers by 2050. Yet there is too little systematic comparative research on the practice of urban health policy and management (HPAM), particularly in the megacities of middle-income and developing nations. We make a case for creating a global database on cities, population health and healthcare systems. The expenses involved in data collection would be difficult to justify without some review of previous work, some agreement on indicators worth measuring, conceptual and methodological considerations to guide the construction of the global database, and a set of research questions and hypotheses to test. We, therefore, address these issues in a manner that we hope will stimulate further discussion and collaboration. PMID:27694667

Needed: Global Collaboration for Comparative Research on Cities and Health.

PubMed

Gusmano, Michael K; Rodwin, Victor G

2016-04-16

Over half of the world's population lives in cities and United Nations (UN) demographers project an increase of 2.5 billion more urban dwellers by 2050. Yet there is too little systematic comparative research on the practice of urban health policy and management (HPAM), particularly in the megacities of middle-income and developing nations. We make a case for creating a global database on cities, population health and healthcare systems. The expenses involved in data collection would be difficult to justify without some review of previous work, some agreement on indicators worth measuring, conceptual and methodological considerations to guide the construction of the global database, and a set of research questions and hypotheses to test. We, therefore, address these issues in a manner that we hope will stimulate further discussion and collaboration. © 2016 by Kerman University of Medical Sciences.

A Database and Tool for Boundary Conditions for Regional Air Quality Modeling: Description and Evaluation

EPA Science Inventory

Transported air pollutants receive increasing attention as regulations tighten and global concentrations increase. The need to represent international transport in regional air quality assessments requires improved representation of boundary concentrations. Currently available ob...

The Global Genome Biodiversity Network (GGBN) Data Standard specification

PubMed Central

Droege, G.; Barker, K.; Seberg, O.; Coddington, J.; Benson, E.; Berendsohn, W. G.; Bunk, B.; Butler, C.; Cawsey, E. M.; Deck, J.; Döring, M.; Flemons, P.; Gemeinholzer, B.; Güntsch, A.; Hollowell, T.; Kelbert, P.; Kostadinov, I.; Kottmann, R.; Lawlor, R. T.; Lyal, C.; Mackenzie-Dodds, J.; Meyer, C.; Mulcahy, D.; Nussbeck, S. Y.; O'Tuama, É.; Orrell, T.; Petersen, G.; Robertson, T.; Söhngen, C.; Whitacre, J.; Wieczorek, J.; Yilmaz, P.; Zetzsche, H.; Zhang, Y.; Zhou, X.

2016-01-01

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today’s ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard. Database URL: http://terms.tdwg.org/wiki/GGBN_Data_Standard PMID:27694206

Recent Developments of the GLIMS Glacier Database

NASA Astrophysics Data System (ADS)

Raup, B. H.; Berthier, E.; Bolch, T.; Kargel, J. S.; Paul, F.; Racoviteanu, A.

2017-12-01

Earth's glaciers are shrinking almost without exception, leading to changes in water resources, timing of runoff, sea level, and hazard potential. Repeat mapping of glacier outlines, lakes, and glacier topography, along with glacial processes, is critically needed to understand how glaciers will react to a changing climate, and how those changes will impact humans. To understand the impacts and processes behind the observed changes, it is crucial to monitor glaciers through time by mapping their areal extent, snow lines, ice flow velocities, associated water bodies, and thickness changes. The glacier database of the Global Land Ice Measurements from Space (GLIMS) initiative is the only multi-temporal glacier database capable of tracking all these glacier measurements and providing them to the scientific community and broader public.Recent developments in GLIMS include improvements in the database and web applications and new activities in the international GLIMS community. The coverage of the GLIMS database has recently grown geographically and temporally by drawing on the Randolph Glacier Inventory (RGI) and other new data sets. The GLIMS database is globally complete, and approximately one third of glaciers have outlines from more than one time. New tools for visualizing and downloading GLIMS data in a choice of formats and data models have been developed, and a new data model for handling multiple glacier records through time while avoiding double-counting of glacier number or area is nearing completion. A GLIMS workshop was held in Boulder, Colorado this year to facilitate two-way communication with the greater community on future needs.The result of this work is a more complete and accurate glacier data repository that shows both the current state of glaciers on Earth and how they have changed in recent decades. Needs for future scientific and technical developments were identified and prioritized at the GLIMS Workshop, and are reported here.

A global Fine-Root Ecology Database to address below-ground challenges in plant ecology

DOE PAGES

Iversen, Colleen M.; McCormack, M. Luke; Powell, A. Shafer; ...

2017-02-28

Variation and tradeoffs within and among plant traits are increasingly being harnessed by empiricists and modelers to understand and predict ecosystem processes under changing environmental conditions. And while fine roots play an important role in ecosystem functioning, fine-root traits are underrepresented in global trait databases. This has hindered efforts to analyze fine-root trait variation and link it with plant function and environmental conditions at a global scale. This Viewpoint addresses the need for a centralized fine-root trait database, and introduces the Fine-Root Ecology Database (FRED, http://roots.ornl.gov) which so far includes > 70 000 observations encompassing a broad range of rootmore » traits and also includes associated environmental data. FRED represents a critical step toward improving our understanding of below-ground plant ecology. For example, FRED facilitates the quantification of variation in fine-root traits across root orders, species, biomes, and environmental gradients while also providing a platform for assessments of covariation among root, leaf, and wood traits, the role of fine roots in ecosystem functioning, and the representation of fine roots in terrestrial biosphere models. There has been a continued input of observations into FRED to fill gaps in trait coverage will improve our understanding of changes in fine-root traits across space and time.« less

A global Fine-Root Ecology Database to address below-ground challenges in plant ecology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Iversen, Colleen M.; McCormack, M. Luke; Powell, A. Shafer

Variation and tradeoffs within and among plant traits are increasingly being harnessed by empiricists and modelers to understand and predict ecosystem processes under changing environmental conditions. And while fine roots play an important role in ecosystem functioning, fine-root traits are underrepresented in global trait databases. This has hindered efforts to analyze fine-root trait variation and link it with plant function and environmental conditions at a global scale. This Viewpoint addresses the need for a centralized fine-root trait database, and introduces the Fine-Root Ecology Database (FRED, http://roots.ornl.gov) which so far includes > 70 000 observations encompassing a broad range of rootmore » traits and also includes associated environmental data. FRED represents a critical step toward improving our understanding of below-ground plant ecology. For example, FRED facilitates the quantification of variation in fine-root traits across root orders, species, biomes, and environmental gradients while also providing a platform for assessments of covariation among root, leaf, and wood traits, the role of fine roots in ecosystem functioning, and the representation of fine roots in terrestrial biosphere models. There has been a continued input of observations into FRED to fill gaps in trait coverage will improve our understanding of changes in fine-root traits across space and time.« less

A global baseline for spawning aggregations of reef fishes.

PubMed

Sadovy De Mitcheson, Yvonne; Cornish, Andrew; Domeier, Michael; Colin, Patrick L; Russell, Martin; Lindeman, Kenyon C

2008-10-01

Species that periodically and predictably congregate on land or in the sea can be extremely vulnerable to overexploitation. Many coral reef fishes form spawning aggregations that are increasingly the target of fishing. Although serious declines are well known for a few species, the extent of this behavior among fishes and the impacts of aggregation fishing are not appreciated widely. To profile aggregating species globally, establish a baseline for future work, and strengthen the case for protection, we (as members of the Society for the Conservation of Reef Fish Aggregations) developed a global database on the occurrence, history, and management of spawning aggregations. We complemented the database with information from interviews with over 300 fishers in Asia and the western Pacific. Sixty-seven species, mainly commercial, in 9 families aggregate to spawn in the 29 countries or territories considered in the database. Ninety percent of aggregation records were from reef pass channels, promontories, and outer reef-slope drop-offs. Multispecies aggregation sites were common, and spawning seasons of most species typically lasted <3 months. The best-documented species in the database, the Nassau grouper (Epinephelus striatus), has undergone substantial declines in aggregations throughout its range and is now considered threatened. Our findings have important conservation and management implications for aggregating species given that exploitation pressures on them are increasing, there is little effective management, and 79% of those aggregations sufficiently well documented were reported to be in decline. Nonetheless, a few success stories demonstrate the benefits of aggregation management. A major shift in perspective on spawning aggregations of reef fish, from being seen as opportunities for exploitation to acknowledging them as important life-history phenomena in need of management, is urgently needed.

The identification of complete domains within protein sequences using accurate E-values for semi-global alignment

PubMed Central

Kann, Maricel G.; Sheetlin, Sergey L.; Park, Yonil; Bryant, Stephen H.; Spouge, John L.

2007-01-01

The sequencing of complete genomes has created a pressing need for automated annotation of gene function. Because domains are the basic units of protein function and evolution, a gene can be annotated from a domain database by aligning domains to the corresponding protein sequence. Ideally, complete domains are aligned to protein subsequences, in a ‘semi-global alignment’. Local alignment, which aligns pieces of domains to subsequences, is common in high-throughput annotation applications, however. It is a mature technique, with the heuristics and accurate E-values required for screening large databases and evaluating the screening results. Hidden Markov models (HMMs) provide an alternative theoretical framework for semi-global alignment, but their use is limited because they lack heuristic acceleration and accurate E-values. Our new tool, GLOBAL, overcomes some limitations of previous semi-global HMMs: it has accurate E-values and the possibility of the heuristic acceleration required for high-throughput applications. Moreover, according to a standard of truth based on protein structure, two semi-global HMM alignment tools (GLOBAL and HMMer) had comparable performance in identifying complete domains, but distinctly outperformed two tools based on local alignment. When searching for complete protein domains, therefore, GLOBAL avoids disadvantages commonly associated with HMMs, yet maintains their superior retrieval performance. PMID:17596268

Developing a Global Database of Historic Flood Events to Support Machine Learning Flood Prediction in Google Earth Engine

NASA Astrophysics Data System (ADS)

Tellman, B.; Sullivan, J.; Kettner, A.; Brakenridge, G. R.; Slayback, D. A.; Kuhn, C.; Doyle, C.

2016-12-01

There is an increasing need to understand flood vulnerability as the societal and economic effects of flooding increases. Risk models from insurance companies and flood models from hydrologists must be calibrated based on flood observations in order to make future predictions that can improve planning and help societies reduce future disasters. Specifically, to improve these models both traditional methods of flood prediction from physically based models as well as data-driven techniques, such as machine learning, require spatial flood observation to validate model outputs and quantify uncertainty. A key dataset that is missing for flood model validation is a global historical geo-database of flood event extents. Currently, the most advanced database of historical flood extent is hosted and maintained at the Dartmouth Flood Observatory (DFO) that has catalogued 4320 floods (1985-2015) but has only mapped 5% of these floods. We are addressing this data gap by mapping the inventory of floods in the DFO database to create a first-of- its-kind, comprehensive, global and historical geospatial database of flood events. To do so, we combine water detection algorithms on MODIS and Landsat 5,7 and 8 imagery in Google Earth Engine to map discrete flood events. The created database will be available in the Earth Engine Catalogue for download by country, region, or time period. This dataset can be leveraged for new data-driven hydrologic modeling using machine learning algorithms in Earth Engine's highly parallelized computing environment, and we will show examples for New York and Senegal.

GMDD: a database of GMO detection methods

PubMed Central

Dong, Wei; Yang, Litao; Shen, Kailin; Kim, Banghyun; Kleter, Gijs A; Marvin, Hans JP; Guo, Rong; Liang, Wanqi; Zhang, Dabing

2008-01-01

Background Since more than one hundred events of genetically modified organisms (GMOs) have been developed and approved for commercialization in global area, the GMO analysis methods are essential for the enforcement of GMO labelling regulations. Protein and nucleic acid-based detection techniques have been developed and utilized for GMOs identification and quantification. However, the information for harmonization and standardization of GMO analysis methods at global level is needed. Results GMO Detection method Database (GMDD) has collected almost all the previous developed and reported GMOs detection methods, which have been grouped by different strategies (screen-, gene-, construct-, and event-specific), and also provide a user-friendly search service of the detection methods by GMO event name, exogenous gene, or protein information, etc. In this database, users can obtain the sequences of exogenous integration, which will facilitate PCR primers and probes design. Also the information on endogenous genes, certified reference materials, reference molecules, and the validation status of developed methods is included in this database. Furthermore, registered users can also submit new detection methods and sequences to this database, and the newly submitted information will be released soon after being checked. Conclusion GMDD contains comprehensive information of GMO detection methods. The database will make the GMOs analysis much easier. PMID:18522755

GlobTherm, a global database on thermal tolerances for aquatic and terrestrial organisms.

PubMed

Bennett, Joanne M; Calosi, Piero; Clusella-Trullas, Susana; Martínez, Brezo; Sunday, Jennifer; Algar, Adam C; Araújo, Miguel B; Hawkins, Bradford A; Keith, Sally; Kühn, Ingolf; Rahbek, Carsten; Rodríguez, Laura; Singer, Alexander; Villalobos, Fabricio; Ángel Olalla-Tárraga, Miguel; Morales-Castilla, Ignacio

2018-03-13

How climate affects species distributions is a longstanding question receiving renewed interest owing to the need to predict the impacts of global warming on biodiversity. Is climate change forcing species to live near their critical thermal limits? Are these limits likely to change through natural selection? These and other important questions can be addressed with models relating geographical distributions of species with climate data, but inferences made with these models are highly contingent on non-climatic factors such as biotic interactions. Improved understanding of climate change effects on species will require extensive analysis of thermal physiological traits, but such data are both scarce and scattered. To overcome current limitations, we created the GlobTherm database. The database contains experimentally derived species' thermal tolerance data currently comprising over 2,000 species of terrestrial, freshwater, intertidal and marine multicellular algae, plants, fungi, and animals. The GlobTherm database will be maintained and curated by iDiv with the aim to keep expanding it, and enable further investigations on the effects of climate on the distribution of life on Earth.

Towards G2G: Systems of Technology Database Systems

NASA Technical Reports Server (NTRS)

Maluf, David A.; Bell, David

2005-01-01

We present an approach and methodology for developing Government-to-Government (G2G) Systems of Technology Database Systems. G2G will deliver technologies for distributed and remote integration of technology data for internal use in analysis and planning as well as for external communications. G2G enables NASA managers, engineers, operational teams and information systems to "compose" technology roadmaps and plans by selecting, combining, extending, specializing and modifying components of technology database systems. G2G will interoperate information and knowledge that is distributed across organizational entities involved that is ideal for NASA future Exploration Enterprise. Key contributions of the G2G system will include the creation of an integrated approach to sustain effective management of technology investments that supports the ability of various technology database systems to be independently managed. The integration technology will comply with emerging open standards. Applications can thus be customized for local needs while enabling an integrated management of technology approach that serves the global needs of NASA. The G2G capabilities will use NASA s breakthrough in database "composition" and integration technology, will use and advance emerging open standards, and will use commercial information technologies to enable effective System of Technology Database systems.

78 FR 58545 - Global Unique Device Identification Database; Draft Guidance for Industry; Availability

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-24

...] Global Unique Device Identification Database; Draft Guidance for Industry; Availability AGENCY: Food and... the availability of the draft guidance entitled ``Global Unique Device Identification Database (GUDID... manufacturer) will interface with the GUDID, as well as information on the database elements that must be...

Databases for the Global Dynamics of Multiparameter Nonlinear Systems

DTIC Science & Technology

2014-03-05

AFRL-OSR-VA-TR-2014-0078 DATABASES FOR THE GLOBAL DYNAMICS OF MULTIPARAMETER NONLINEAR SYSTEMS Konstantin Mischaikow RUTGERS THE STATE UNIVERSITY OF...University of New Jersey ASB III, Rutgers Plaza New Brunswick, NJ 08807 DATABASES FOR THE GLOBAL DYNAMICS OF MULTIPARAMETER NONLINEAR SYSTEMS ...dynamical systems . We refer to the output as a Database for Global Dynamics since it allows the user to query for information about the existence and

Pharmacodynamics and Systems Pharmacology Approaches to Repurposing Drugs in the Wake of Global Health Burden.

PubMed

Bai, Jane P F

2016-10-01

There are emergent needs for cost-effective treatment worldwide, for which repurposing to develop a drug with existing marketing approval of disease(s) for new disease(s) is a valid option. Although strategic mining of electronic health records has produced real-world evidences to inform drug repurposing, using omics data (drug and disease), knowledge base of protein interactions, and database of transcription factors have been explored. Structured integration of all the existing data under the framework of drug repurposing will facilitate decision making. The ability to foresee the need to integrate new data types produced by emergent technologies and to enable data connectivity in the context of human biology and targeted diseases, as well as to use the existing crucial quality data of all approved drugs will catapult the number of drugs being successfully repurposed. However, translational pharmacodynamics databases for modeling information across human biology in the context of host factors are lacking and are critically needed for drug repurposing to improve global public health, especially for the efforts to combat neglected tropic diseases as well as emergent infectious diseases such as Zika or Ebola virus. Published by Elsevier Inc.

The Global Genome Biodiversity Network (GGBN) Data Standard specification.

PubMed

Droege, G; Barker, K; Seberg, O; Coddington, J; Benson, E; Berendsohn, W G; Bunk, B; Butler, C; Cawsey, E M; Deck, J; Döring, M; Flemons, P; Gemeinholzer, B; Güntsch, A; Hollowell, T; Kelbert, P; Kostadinov, I; Kottmann, R; Lawlor, R T; Lyal, C; Mackenzie-Dodds, J; Meyer, C; Mulcahy, D; Nussbeck, S Y; O'Tuama, É; Orrell, T; Petersen, G; Robertson, T; Söhngen, C; Whitacre, J; Wieczorek, J; Yilmaz, P; Zetzsche, H; Zhang, Y; Zhou, X

2016-01-01

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.Database URL: http://terms.tdwg.org/wiki/GGBN_Data_Standard. © The Author(s) 2016. Published by Oxford University Press.

A global Fine-Root Ecology Database to address below-ground challenges in plant ecology.

PubMed

Iversen, Colleen M; McCormack, M Luke; Powell, A Shafer; Blackwood, Christopher B; Freschet, Grégoire T; Kattge, Jens; Roumet, Catherine; Stover, Daniel B; Soudzilovskaia, Nadejda A; Valverde-Barrantes, Oscar J; van Bodegom, Peter M; Violle, Cyrille

2017-07-01

Variation and tradeoffs within and among plant traits are increasingly being harnessed by empiricists and modelers to understand and predict ecosystem processes under changing environmental conditions. While fine roots play an important role in ecosystem functioning, fine-root traits are underrepresented in global trait databases. This has hindered efforts to analyze fine-root trait variation and link it with plant function and environmental conditions at a global scale. This Viewpoint addresses the need for a centralized fine-root trait database, and introduces the Fine-Root Ecology Database (FRED, http://roots.ornl.gov) which so far includes > 70 000 observations encompassing a broad range of root traits and also includes associated environmental data. FRED represents a critical step toward improving our understanding of below-ground plant ecology. For example, FRED facilitates the quantification of variation in fine-root traits across root orders, species, biomes, and environmental gradients while also providing a platform for assessments of covariation among root, leaf, and wood traits, the role of fine roots in ecosystem functioning, and the representation of fine roots in terrestrial biosphere models. Continued input of observations into FRED to fill gaps in trait coverage will improve our understanding of changes in fine-root traits across space and time. © 2017 UT-Battelle LLC. New Phytologist © 2017 New Phytologist Trust.

21 CFR 830.350 - Correction of information submitted to the Global Unique Device Identification Database.

Code of Federal Regulations, 2014 CFR

2014-04-01

... Unique Device Identification Database. 830.350 Section 830.350 Food and Drugs FOOD AND DRUG... Global Unique Device Identification Database § 830.350 Correction of information submitted to the Global Unique Device Identification Database. (a) If FDA becomes aware that any information submitted to the...

The International Database of Efficient Appliances (IDEA): A New Resource for Global Efficiency Policy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gerke, Brian F; McNeil, Michael A; Tu, Thomas

A major barrier to effective appliance efficiency program design and evaluation is a lack of data for determination of market baselines and cost-effective energy savings potential. The data gap is particularly acute in developing countries, which may have the greatest savings potential per unit GDP. To address this need, we are developing the International Database of Efficient Appliances (IDEA), which automatically compiles data from a wide variety of online sources to create a unified repository of information on efficiency, price, and features for a wide range of energy-consuming products across global markets. This paper summarizes the database framework and demonstratesmore » the power of IDEA as a resource for appliance efficiency research and policy development. Using IDEA data for refrigerators in China and India, we develop robust cost-effectiveness indicators that allow rapid determination of savings potential within each market, as well as comparison of that potential across markets and appliance types. We discuss implications for future energy efficiency policy development.« less

A global gas flaring black carbon emission rate dataset from 1994 to 2012

PubMed Central

Huang, Kan; Fu, Joshua S.

2016-01-01

Global flaring of associated petroleum gas is a potential emission source of particulate matters (PM) and could be notable in some specific regions that are in urgent need of mitigation. PM emitted from gas flaring is mainly in the form of black carbon (BC), which is a strong short-lived climate forcer. However, BC from gas flaring has been neglected in most global/regional emission inventories and is rarely considered in climate modeling. Here we present a global gas flaring BC emission rate dataset for the period 1994–2012 in a machine-readable format. We develop a region-dependent gas flaring BC emission factor database based on the chemical compositions of associated petroleum gas at various oil fields. Gas flaring BC emission rates are estimated using this emission factor database and flaring volumes retrieved from satellite imagery. Evaluation using a chemical transport model suggests that consideration of gas flaring emissions can improve model performance. This dataset will benefit and inform a broad range of research topics, e.g., carbon budget, air quality/climate modeling, and environmental/human exposure. PMID:27874852

A global gas flaring black carbon emission rate dataset from 1994 to 2012

NASA Astrophysics Data System (ADS)

Huang, Kan; Fu, Joshua S.

2016-11-01

Global flaring of associated petroleum gas is a potential emission source of particulate matters (PM) and could be notable in some specific regions that are in urgent need of mitigation. PM emitted from gas flaring is mainly in the form of black carbon (BC), which is a strong short-lived climate forcer. However, BC from gas flaring has been neglected in most global/regional emission inventories and is rarely considered in climate modeling. Here we present a global gas flaring BC emission rate dataset for the period 1994-2012 in a machine-readable format. We develop a region-dependent gas flaring BC emission factor database based on the chemical compositions of associated petroleum gas at various oil fields. Gas flaring BC emission rates are estimated using this emission factor database and flaring volumes retrieved from satellite imagery. Evaluation using a chemical transport model suggests that consideration of gas flaring emissions can improve model performance. This dataset will benefit and inform a broad range of research topics, e.g., carbon budget, air quality/climate modeling, and environmental/human exposure.

Spatial aspects of building and population exposure data and their implications for global earthquake exposure modeling

USGS Publications Warehouse

Dell’Acqua, F.; Gamba, P.; Jaiswal, K.

2012-01-01

This paper discusses spatial aspects of the global exposure dataset and mapping needs for earthquake risk assessment. We discuss this in the context of development of a Global Exposure Database for the Global Earthquake Model (GED4GEM), which requires compilation of a multi-scale inventory of assets at risk, for example, buildings, populations, and economic exposure. After defining the relevant spatial and geographic scales of interest, different procedures are proposed to disaggregate coarse-resolution data, to map them, and if necessary to infer missing data by using proxies. We discuss the advantages and limitations of these methodologies and detail the potentials of utilizing remote-sensing data. The latter is used especially to homogenize an existing coarser dataset and, where possible, replace it with detailed information extracted from remote sensing using the built-up indicators for different environments. Present research shows that the spatial aspects of earthquake risk computation are tightly connected with the availability of datasets of the resolution necessary for producing sufficiently detailed exposure. The global exposure database designed by the GED4GEM project is able to manage datasets and queries of multiple spatial scales.

Integration of environmental simulation models with satellite remote sensing and geographic information systems technologies: case studies

USGS Publications Warehouse

Steyaert, Louis T.; Loveland, Thomas R.; Brown, Jesslyn F.; Reed, Bradley C.

1993-01-01

Environmental modelers are testing and evaluating a prototype land cover characteristics database for the conterminous United States developed by the EROS Data Center of the U.S. Geological Survey and the University of Nebraska Center for Advanced Land Management Information Technologies. This database was developed from multi temporal, 1-kilometer advanced very high resolution radiometer (AVHRR) data for 1990 and various ancillary data sets such as elevation, ecological regions, and selected climatic normals. Several case studies using this database were analyzed to illustrate the integration of satellite remote sensing and geographic information systems technologies with land-atmosphere interactions models at a variety of spatial and temporal scales. The case studies are representative of contemporary environmental simulation modeling at local to regional levels in global change research, land and water resource management, and environmental simulation modeling at local to regional levels in global change research, land and water resource management and environmental risk assessment. The case studies feature land surface parameterizations for atmospheric mesoscale and global climate models; biogenic-hydrocarbons emissions models; distributed parameter watershed and other hydrological models; and various ecological models such as ecosystem, dynamics, biogeochemical cycles, ecotone variability, and equilibrium vegetation models. The case studies demonstrate the important of multi temporal AVHRR data to develop to develop and maintain a flexible, near-realtime land cover characteristics database. Moreover, such a flexible database is needed to derive various vegetation classification schemes, to aggregate data for nested models, to develop remote sensing algorithms, and to provide data on dynamic landscape characteristics. The case studies illustrate how such a database supports research on spatial heterogeneity, land use, sensitivity analysis, and scaling issues involving regional extrapolations and parameterizations of dynamic land processes within simulation models.

Introducing GFWED: The Global Fire Weather Database

NASA Technical Reports Server (NTRS)

Field, R. D.; Spessa, A. C.; Aziz, N. A.; Camia, A.; Cantin, A.; Carr, R.; de Groot, W. J.; Dowdy, A. J.; Flannigan, M. D.; Manomaiphiboon, K.;

Setting the scene for SWOT: global maps of river reach hydrodynamic variables

NASA Astrophysics Data System (ADS)

Schumann, Guy J.-P.; Durand, Michael; Pavelsky, Tamlin; Lion, Christine; Allen, George

2017-04-01

Credible and reliable characterization of discharge from the Surface Water and Ocean Topography (SWOT) mission using the Manning-based algorithms needs a prior estimate constraining reach-scale channel roughness, base flow and river bathymetry. For some places, any one of those variables may exist locally or even regionally as a measurement, which is often only at a station, or sometimes as a basin-wide model estimate. However, to date none of those exist at the scale required for SWOT and thus need to be mapped at a continental scale. The prior estimates will be employed for producing initial discharge estimates, which will be used as starting-guesses for the various Manning-based algorithms, to be refined using the SWOT measurements themselves. A multitude of reach-scale variables were derived, including Landsat-based width, SRTM slope and accumulation area. As a possible starting point for building the prior database of low flow, river bathymetry and channel roughness estimates, we employed a variety of sources, including data from all GRDC records, simulations from the long-time runs of the global water balance model (WBM), and reach-based calculations from hydraulic geometry relationships as well as Manning's equation. Here, we present the first global maps of this prior database with some initial validation, caveats and prospective uses.

Bathymetry of Lake William C. Bowen and Municipal Reservoir #1, Spartanburg County, South Carolina, 2008

USGS Publications Warehouse

Nagle, D.D.; Campbell, B.G.; Lowery, M.A.

2009-01-01

The increasing use and importance of lakes for water supply to communities enhance the need for an accurate methodology to determine lake bathymetry and storage capacity. A global positioning receiver and a fathometer were used to collect position data and water depth in February 2008 at Lake William C. Bowen and Municipal Reservoir #1, Spartanburg County, South Carolina. All collected data were imported into a geographic information system database. A bathymetric surface model, contour map, and stage-area and -volume relations were created from the geographic information database.

Accessible and inexpensive tools for global HPAI surveillance: A mobile-phone based system.

PubMed

Lin, Yibo; Heffernan, Claire

2011-02-01

Highly pathogenic avian influenza (HPAI) disproportionately impacts poor livestock keepers in southern countries. Although the estimated cost of the disease in the billions, response to the epidemic remains fragmented and information channels slow. Given the continuing threat of outbreaks, and what appears to be the politicisation of outbreak reporting, new tools are needed to enforce transparency in stakeholder communication. In response to this need, we created a mobile-phone based surveillance system to aid critical information transfer among policy makers, practitioners and the poor themselves. The tool operates at the local, national and global levels and further links decision-makers to international databases. Copyright © 2010 Elsevier B.V. All rights reserved.

Spatial database for a global assessment of undiscovered copper resources: Chapter Z in Global mineral resource assessment

USGS Publications Warehouse

Dicken, Connie L.; Dunlap, Pamela; Parks, Heather L.; Hammarstrom, Jane M.; Zientek, Michael L.; Zientek, Michael L.; Hammarstrom, Jane M.; Johnson, Kathleen M.

2016-07-13

As part of the first-ever U.S. Geological Survey global assessment of undiscovered copper resources, data common to several regional spatial databases published by the U.S. Geological Survey, including one report from Finland and one from Greenland, were standardized, updated, and compiled into a global copper resource database. This integrated collection of spatial databases provides location, geologic and mineral resource data, and source references for deposits, significant prospects, and areas permissive for undiscovered deposits of both porphyry copper and sediment-hosted copper. The copper resource database allows for efficient modeling on a global scale in a geographic information system (GIS) and is provided in an Esri ArcGIS file geodatabase format.

Bringing a needle to a laser fight: comparing greenhouse gas sampling methods with gas chromatography and fourier transform infrared spectroscopy

USDA-ARS?s Scientific Manuscript database

As scientists, producers, policymakers, and the general public become more concerned about impacts of climate change, there is an increasing need to understand and quantify greenhouse gas emissions from agricultural practices, which often feed into global, multi-institution databases. Current best p...

GISD

Science.gov Websites

GISD Global invasive species database Home About the GISD How to use Contacts 100 of the worst GISD for Any additional comments The Global Invasive Species Database (GISD) contains authoritative The Global Invasive Species Database was developed and is managed by the Invasive Species Specialist

Development of an Open Global Oil and Gas Infrastructure Inventory and Geodatabase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rose, Kelly

This submission contains a technical report describing the development process and visual graphics for the Global Oil and Gas Infrastructure database. Access the GOGI database using the following link: https://edx.netl.doe.gov/dataset/global-oil-gas-features-database

Global Oil & Gas Features Database

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kelly Rose; Jennifer Bauer; Vic Baker

This submission contains a zip file with the developed Global Oil & Gas Features Database (as an ArcGIS geodatabase). Access the technical report describing how this database was produced using the following link: https://edx.netl.doe.gov/dataset/development-of-an-open-global-oil-and-gas-infrastructure-inventory-and-geodatabase

WikiPEATia - a web based platform for assembling peatland data through ‘crowd sourcing’

NASA Astrophysics Data System (ADS)

Wisser, D.; Glidden, S.; Fieseher, C.; Treat, C. C.; Routhier, M.; Frolking, S. E.

2009-12-01

The Earth System Science community is realizing that peatlands are an important and unique terrestrial ecosystem that has not yet been well-integrated into large-scale earth system analyses. A major hurdle is the lack of accessible, geospatial data of peatland distribution, coupled with data on peatland properties (e.g., vegetation composition, peat depth, basal dates, soil chemistry, peatland class) at the global scale. This data, however, is available at the local scale. Although a comprehensive global database on peatlands probably lags similar data on more economically important ecosystems such as forests, grasslands, croplands, a large amount of field data have been collected over the past several decades. A few efforts have been made to map peatlands at large scales but existing data have not been assembled into a single geospatial database that is publicly accessible or do not depict data with a level of detail that is needed in the Earth System Science Community. A global peatland database would contribute to advances in a number of research fields such as hydrology, vegetation and ecosystem modeling, permafrost modeling, and earth system modeling. We present a Web 2.0 approach that uses state-of-the-art webserver and innovative online mapping technologies and is designed to create such a global database through ‘crowd-sourcing’. Primary functions of the online system include form-driven textual user input of peatland research metadata, spatial data input of peatland areas via a mapping interface, database editing and querying editing capabilities, as well as advanced visualization and data analysis tools. WikiPEATia provides an integrated information technology platform for assembling, integrating, and posting peatland-related geospatial datasets facilitates and encourages research community involvement. A successful effort will make existing peatland data much more useful to the research community, and will help to identify significant data gaps.

Counterfeit Drug Penetration into Global Legitimate Medicine Supply Chains: A Global Assessment

PubMed Central

Mackey, Tim K.; Liang, Bryan A.; York, Peter; Kubic, Thomas

2015-01-01

Counterfeit medicines are a global public health risk. We assess counterfeit reports involving the legitimate supply chain using 2009–2011 data from the Pharmaceutical Security Institute Counterfeit Incident System (PSI CIS) database that uses both open and nonpublic data sources. Of the 1,510 identified CIS reports involving counterfeits, 27.6% reported China as the source country of the incident/detection. Further, 51.3% were reported as counterfeit but the specific counterfeit subcategory was not known or verifiable. The most prevalent therapeutic category was anti-infectives (21.1%) with most reports originating from health-related government agencies. Geographically, Asian and Latin American regions and, economically, middle-income markets were most represented. A total of 127 (64.8%) of a total of 196 countries had no legitimate supply chain CIS counterfeit reports. Improvements in surveillance, including detection of security breaches, data collection, analysis, and dissemination are urgently needed to address public health needs to combat the global counterfeit medicines trade. PMID:25897059

Counterfeit drug penetration into global legitimate medicine supply chains: a global assessment.

PubMed

Mackey, Tim K; Liang, Bryan A; York, Peter; Kubic, Thomas

2015-06-01

Counterfeit medicines are a global public health risk. We assess counterfeit reports involving the legitimate supply chain using 2009-2011 data from the Pharmaceutical Security Institute Counterfeit Incident System (PSI CIS) database that uses both open and nonpublic data sources. Of the 1,510 identified CIS reports involving counterfeits, 27.6% reported China as the source country of the incident/detection. Further, 51.3% were reported as counterfeit but the specific counterfeit subcategory was not known or verifiable. The most prevalent therapeutic category was anti-infectives (21.1%) with most reports originating from health-related government agencies. Geographically, Asian and Latin American regions and, economically, middle-income markets were most represented. A total of 127 (64.8%) of a total of 196 countries had no legitimate supply chain CIS counterfeit reports. Improvements in surveillance, including detection of security breaches, data collection, analysis, and dissemination are urgently needed to address public health needs to combat the global counterfeit medicines trade. © The American Society of Tropical Medicine and Hygiene.

Methods to achieve accurate projection of regional and global raster databases

USGS Publications Warehouse

Usery, E. Lynn; Seong, Jeong Chang; Steinwand, Dan

2002-01-01

Modeling regional and global activities of climatic and human-induced change requires accurate geographic data from which we can develop mathematical and statistical tabulations of attributes and properties of the environment. Many of these models depend on data formatted as raster cells or matrices of pixel values. Recently, it has been demonstrated that regional and global raster datasets are subject to significant error from mathematical projection and that these errors are of such magnitude that model results may be jeopardized (Steinwand, et al., 1995; Yang, et al., 1996; Usery and Seong, 2001; Seong and Usery, 2001). There is a need to develop methods of projection that maintain the accuracy of these datasets to support regional and global analyses and modeling

A central database for the Global Terrestrial Network for Permafrost (GTN-P)

NASA Astrophysics Data System (ADS)

Elger, Kirsten; Lanckman, Jean-Pierre; Lantuit, Hugues; Karlsson, Ævar Karl; Johannsson, Halldór

2013-04-01

The Global Terrestrial Network for Permafrost (GTN-P) is the primary international observing network for permafrost sponsored by the Global Climate Observing System (GCOS) and the Global Terrestrial Observing System (GTOS), and managed by the International Permafrost Association (IPA). It monitors the Essential Climate Variable (ECV) permafrost that consists of permafrost temperature and active-layer thickness, with the long-term goal of obtaining a comprehensive view of the spatial structure, trends, and variability of changes in the active layer and permafrost. The network's two international monitoring components are (1) CALM (Circumpolar Active Layer Monitoring) and the (2) Thermal State of Permafrost (TSP), which is made of an extensive borehole-network covering all permafrost regions. Both programs have been thoroughly overhauled during the International Polar Year 2007-2008 and extended their coverage to provide a true circumpolar network stretching over both Hemispheres. GTN-P has gained considerable visibility in the science community in providing the baseline against which models are globally validated and incorporated in climate assessments. Yet it was until now operated on a voluntary basis, and is now being redesigned to meet the increasing expectations from the science community. To update the network's objectives and deliver the best possible products to the community, the IPA organized a workshop to define the user's needs and requirements for the production, archival, storage and dissemination of the permafrost data products it manages. From the beginning on, GNT-P data was "outfitted" with an open data policy with free data access via the World Wide Web. The existing data, however, is far from being homogeneous: is not yet optimized for databases, there is no framework for data reporting or archival and data documentation is incomplete. As a result, and despite the utmost relevance of permafrost in the Earth's climate system, the data has not been used by as many researchers as intended by the initiators of these global programs. The European Union project PAGE21 created opportunities to develop this central database for GTN-P data during the duration of the project and beyond. The database aims to be the one location where the researcher can find data, metadata and information of all relevant parameters for a specific site. Each component of the Data Management System (DMS), including parameters, data levels and metadata formats were developed in cooperation with GTN-P and the IPA. The general framework of the GTN-P DMS is based on an object-oriented model (OOM) and implemented into a spatial database. To ensure interoperability and enable potential inter-database search, field names are following international metadata standards. The outputs of the DMS will be tailored to the needs of the modeling community but also to the ones of other stakeholders. In particular, new products will be developed in partnership with the IPA and other relevant international organizations to raise awareness on permafrost in the policy-making arena. The DMS will be released to a broader public in May 2013 and we expect to have the first active data upload - via an online interface - after 2013's summer field season.

Creation of Norms for the Purpose of Global Talent Management

ERIC Educational Resources Information Center

Hedricks, Cynthia A.; Robie, Chet; Harnisher, John V.

2008-01-01

Personality scores were used to construct three databases of global norms. The composition of the three databases varied according to percentage of cases by global region, occupational group, applicant status, and gender of the job candidate. Comparison of personality scores across the three norms databases revealed that the magnitude of the…

Forest-Observation-System.net - towards a global in-situ data repository for biomass datasets validation

NASA Astrophysics Data System (ADS)

Shchepashchenko, D.; Chave, J.; Phillips, O. L.; Davies, S. J.; Lewis, S. L.; Perger, C.; Dresel, C.; Fritz, S.; Scipal, K.

2017-12-01

Forest monitoring is high on the scientific and political agenda. Global measurements of forest height, biomass and how they change with time are urgently needed as essential climate and ecosystem variables. The Forest Observation System - FOS (http://forest-observation-system.net/) is an international cooperation to establish a global in-situ forest biomass database to support earth observation and to encourage investment in relevant field-based observations and science. FOS aims to link the Remote Sensing (RS) community with ecologists who measure forest biomass and estimating biodiversity in the field for a common benefit. The benefit of FOS for the RS community is the partnering of the most established teams and networks that manage permanent forest plots globally; to overcome data sharing issues and introduce a standard biomass data flow from tree level measurement to the plot level aggregation served in the most suitable form for the RS community. Ecologists benefit from the FOS with improved access to global biomass information, data standards, gap identification and potential improved funding opportunities to address the known gaps and deficiencies in the data. FOS closely collaborate with the Center for Tropical Forest Science -CTFS-ForestGEO, the ForestPlots.net (incl. RAINFOR, AfriTRON and T-FORCES), AusCover, Tropical managed Forests Observatory and the IIASA network. FOS is an open initiative with other networks and teams most welcome to join. The online database provides open access for both metadata (e.g. who conducted the measurements, where and which parameters) and actual data for a subset of plots where the authors have granted access. A minimum set of database values include: principal investigator and institution, plot coordinates, number of trees, forest type and tree species composition, wood density, canopy height and above ground biomass of trees. Plot size is 0.25 ha or large. The database will be essential for validating and calibrating satellite observations and various models.

Development of a Global Fire Weather Database

NASA Technical Reports Server (NTRS)

Field, R. D.; Spessa, A. C.; Aziz, N. A.; Camia, A.; Cantin, A.; Carr, R.; de Groot, W. J.; Dowdy, A. J.; Flannigan, M. D.; Manomaiphiboon, K.;

An Idea for the Future of Dental Research: A Cloud-Based Clinical Network and Database

ERIC Educational Resources Information Center

Owtad, Payam; Taichman, Russell; Park, Jae Hyun; Yaibuathes, Sorn; Knapp, John

2013-01-01

Evidence-based dentistry (EBD) is an approach to oral healthcare requiring systematic assessment of relevant scientific evidence to clinical practice and patients' needs. EBD attempts to globally establish personalized dental care based upon the most recent and highest order scientific evidence. However, some times the EBD does not consider local…

Carbon in down woody materials of eastern U.S. forests

Treesearch

David C. Chojnacky; Robert A. Mickler; Linda S. Heath

2003-01-01

To better manage global carbon storage and other ecosystem processes, there is a need for accessible carbon data on components of down woody materials (DWM) in forests. We examined the feasibility of linking available data on DWM to the U.S. Department of Agriculture (USDA) Forest Inventory Analysis (FIA) database, which covers the nation's forest lands. We...

Large Differences in Global and Regional Total Soil Carbon Stock Estimates Based on SoilGrids, HWSD, and NCSCD: Intercomparison and Evaluation Based on Field Data From USA, England, Wales, and France

NASA Astrophysics Data System (ADS)

Tifafi, Marwa; Guenet, Bertrand; Hatté, Christine

2018-01-01

Soils are the major component of the terrestrial ecosystem and the largest organic carbon reservoir on Earth. However, they are a nonrenewable natural resource and especially reactive to human disturbance and climate change. Despite its importance, soil carbon dynamics is an important source of uncertainty for future climate predictions and there is a growing need for more precise information to better understand the mechanisms controlling soil carbon dynamics and better constrain Earth system models. The aim of our work is to compare soil organic carbon stocks given by different global and regional databases that already exist. We calculated global and regional soil carbon stocks at 1 m depth given by three existing databases (SoilGrids, the Harmonized World Soil Database, and the Northern Circumpolar Soil Carbon Database). We observed that total stocks predicted by each product differ greatly: it is estimated to be around 3,400 Pg by SoilGrids and is about 2,500 Pg according to Harmonized World Soil Database. This difference is marked in particular for boreal regions where differences can be related to high disparities in soil organic carbon concentration. Differences in other regions are more limited and may be related to differences in bulk density estimates. Finally, evaluation of the three data sets versus ground truth data shows that (i) there is a significant difference in spatial patterns between ground truth data and compared data sets and that (ii) data sets underestimate by more than 40% the soil organic carbon stock compared to field data.

MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data

PubMed Central

Guignon, V.; Sempere, G.; Sardos, J.; Hueber, Y.; Duvergey, H.; Andrieu, A.; Chase, R.; Jenny, C.; Hazekamp, T.; Irish, B.; Jelali, K.; Adeka, J.; Ayala-Silva, T.; Chao, C.P.; Daniells, J.; Dowiya, B.; Effa effa, B.; Gueco, L.; Herradura, L.; Ibobondji, L.; Kempenaers, E.; Kilangi, J.; Muhangi, S.; Ngo Xuan, P.; Paofa, J.; Pavis, C.; Thiemele, D.; Tossou, C.; Sandoval, J.; Sutanto, A.; Vangu Paka, G.; Yi, G.; Van den houwe, I.; Roux, N.

2017-01-01

Abstract Unraveling the genetic diversity held in genebanks on a large scale is underway, due to advances in Next-generation sequence (NGS) based technologies that produce high-density genetic markers for a large number of samples at low cost. Genebank users should be in a position to identify and select germplasm from the global genepool based on a combination of passport, genotypic and phenotypic data. To facilitate this, a new generation of information systems is being designed to efficiently handle data and link it with other external resources such as genome or breeding databases. The Musa Germplasm Information System (MGIS), the database for global ex situ-held banana genetic resources, has been developed to address those needs in a user-friendly way. In developing MGIS, we selected a generic database schema (Chado), the robust content management system Drupal for the user interface, and Tripal, a set of Drupal modules which links the Chado schema to Drupal. MGIS allows germplasm collection examination, accession browsing, advanced search functions, and germplasm orders. Additionally, we developed unique graphical interfaces to compare accessions and to explore them based on their taxonomic information. Accession-based data has been enriched with publications, genotyping studies and associated genotyping datasets reporting on germplasm use. Finally, an interoperability layer has been implemented to facilitate the link with complementary databases like the Banana Genome Hub and the MusaBase breeding database. Database URL: https://www.crop-diversity.org/mgis/ PMID:29220435

WetDATA Hub: Democratizing Access to Water Data to Accelerate Innovation through Data Visualization, Predictive Analytics and Artificial Intelligence Applications

NASA Astrophysics Data System (ADS)

Sarni, W.

2017-12-01

Water scarcity and poor quality impacts economic development, business growth, and social well-being. Water has become, in our generation, the foremost critical local, regional, and global issue of our time. Despite these needs, there is no water hub or water technology accelerator solely dedicated to water data and tools. There is a need by the public and private sectors for vastly improved data management and visualization tools. This is the WetDATA opportunity - to develop a water data tech hub dedicated to water data acquisition, analytics, and visualization tools for informed policy and business decisions. WetDATA's tools will help incubate disruptive water data technologies and accelerate adoption of current water data solutions. WetDATA is a Colorado-based (501c3), global hub for water data analytics and technology innovation. WetDATA's vision is to be a global leader in water information, data technology innovation and collaborate with other US and global water technology hubs. ROADMAP * Portal (www.wetdata.org) to provide stakeholders with tools/resources to understand related water risks. * The initial activities will provide education, awareness and tools to stakeholders to support the implementation of the Colorado State Water Plan. * Leverage the Western States Water Council Water Data Exchange database. * Development of visualization, predictive analytics and AI tools to engage with stakeholders and provide actionable data and information. TOOLS Education: Provide information on water issues and risks at the local, state, national and global scale. Visualizations: Development of data analytics and visualization tools based upon the 2030 Water Resources Group methodology to support the implementation of the Colorado State Water Plan. Predictive Analytics: Accessing publically available water databases and using machine learning to develop water availability forecasting tools, and time lapse images to support city / urban planning.

Improving Global Building Exposure Data for Disaster Forecasting, Mitigation, and Response

NASA Astrophysics Data System (ADS)

Chen, R. S.; Huyck, C.; Lewis, G.; Becker, M.; Vinay, S.; Tralli, D.; Eguchi, R.

2013-12-01

This paper describes an exploratory study being performed under the NASA Applied Sciences Program where the goal is to integrate Earth science data and information for disaster forecasting, mitigation and response. Specifically, we are delivering EO-derived built environment data and information for use in catastrophe (CAT) models and loss estimation tools. CAT models and loss estimation tools typically use GIS exposure databases to characterize the real-world environment. These datasets are often a source of great uncertainty in the loss estimates, particularly in international events, because the data are incomplete, and sometimes inaccurate and disparate in quality from one region to another. Preliminary research by project team members as part of the Global Earthquake Model (GEM) consortium suggests that a strong relationship exists between the height and volume of built-up areas and NASA data products from the Suomi National Polar-Orbiting Partnership (NPP) Visible Infrared Imaging Radiometer Suite (VIIRS), the Moderate Resolution Imaging Spectroradiometer (MODIS), and the NASA Socioeconomic Data and Applications Center (SEDAC). Applying this knowledge within the framework of the GEM Global Exposure Database (GED) is significantly enhancing our ability to quantify building exposure, particularly in developing countries and emerging insurance markets. Global insurance products that have a more comprehensive basis for assessing risk and exposure - as from EO-derived data and information assimilated into CAT models and loss estimation tools - will help a) help to transform the way in which we measure, monitor and assess the vulnerability of our communities globally, and in turn, b) help encourage the investments needed - especially in the developing world - stimulating economic growth and actions that would lead to a more disaster-resilient world. Improved building exposure data will also be valuable for near-real time applications such as emergency response planning and post-disaster damage and needs assessment.

Emission Database for Global Atmospheric Research (EDGAR).

ERIC Educational Resources Information Center

Olivier, J. G. J.; And Others

1994-01-01

Presents the objective and methodology chosen for the construction of a global emissions source database called EDGAR and the structural design of the database system. The database estimates on a regional and grid basis, 1990 annual emissions of greenhouse gases, and of ozone depleting compounds from all known sources. (LZ)

Comprehensive data set of global land cover change for land surface model applications

NASA Astrophysics Data System (ADS)

Sterling, Shannon; Ducharne, AgnèS.

2008-09-01

To increase our understanding of how humans have altered the Earth's surface and to facilitate land surface modeling experiments aimed to elucidate the direct impact of land cover change on the Earth system, we create and analyze a database of global land use/cover change (LUCC). From a combination of sources including satellite imagery and other remote sensing, ecological modeling, and country surveys, we adapt and synthesize existing maps of potential land cover and layers of the major anthropogenic land covers, including a layer of wetland loss, that are then tailored for land surface modeling studies. Our map database shows that anthropogenic land cover totals to approximately 40% of the Earth's surface, consistent with literature estimates. Almost all (92%) of the natural grassland on the Earth has been converted to human use, mostly grazing land, and the natural temperate savanna with mixed C3/C4 is almost completely lost (˜90%), due mostly to conversion to cropland. Yet the resultant change in functioning, in terms of plant functional types, of the Earth system from land cover change is dominated by a loss of tree cover. Finally, we identify need for standardization of percent bare soil for global land covers and for a global map of tree plantations. Estimates of land cover change are inherently uncertain, and these uncertainties propagate into modeling studies of the impact of land cover change on the Earth system; to begin to address this problem, modelers need to document fully areas of land cover change used in their studies.

The global need for lived experience leadership.

PubMed

Byrne, Louise; Stratford, Anthony; Davidson, Larry

2018-03-01

Common challenges and experiences of the lived experience/peer workforce globally are considered, with an emphasis on ensuring that future developments both protect and promote the unique lived experience perspective. In the Western world, rapid growth in lived experience roles has led to an urgent need for training and workforce development. However, research indicates the roles risk being coopted without clear lived experience leadership, which is often not occurring. In developing countries and in many Western contexts, the lived experience role has not yet been accepted within the mental health workforce. The need for lived experience leadership to guide these issues is highlighted. Peer-reviewed research, relevant gray literature, and professional experience in countries where little published material currently exists. A window of opportunity currently exists to maximize lived experience leadership, and that window may be closing fast if broad-based actions are not initiated now. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

Root Systems of Individual Plants, and the Biotic and Abiotic Factors Controlling Their Depth and Distribution: a Synthesis Using a Global Database.

NASA Astrophysics Data System (ADS)

Tumber-Davila, S. J.; Schenk, H. J.; Jackson, R. B.

2017-12-01

This synthesis examines plant rooting distributions globally, by doubling the number of entries in the Root Systems of Individual Plants database (RSIP) created by Schenk and Jackson. Root systems influence many processes, including water and nutrient uptake and soil carbon storage. Root systems also mediate vegetation responses to changing climatic and environmental conditions. Therefore, a collective understanding of the importance of rooting systems to carbon sequestration, soil characteristics, hydrology, and climate, is needed. Current global models are limited by a poor understanding of the mechanisms affecting rooting, carbon stocks, and belowground biomass. This improved database contains an extensive bank of records describing the rooting system of individual plants, as well as detailed information on the climate and environment from which the observations are made. The expanded RSIP database will: 1) increase our understanding of rooting depths, lateral root spreads and above and belowground allometry; 2) improve the representation of plant rooting systems in Earth System Models; 3) enable studies of how climate change will alter and interact with plant species and functional groups in the future. We further focus on how plant rooting behavior responds to variations in climate and the environment, and create a model that can predict rooting behavior given a set of environmental conditions. Preliminary results suggest that high potential evapotranspiration and seasonality of precipitation are indicative of deeper rooting after accounting for plant growth form. When mapping predicted deep rooting by climate, we predict deepest rooting to occur in equatorial South America, Africa, and central India.

Final report for DOE Award # DE- SC0010039*: Carbon dynamics of forest recovery under a changing climate: Forcings, feedbacks, and implications for earth system modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson-Teixeira, Kristina J.; DeLucia, Evan H.; Duval, Benjamin D.

2015-10-29

To advance understanding of C dynamics of forests globally, we compiled a new database, the Forest C database (ForC-db), which contains data on ground-based measurements of ecosystem-level C stocks and annual fluxes along with disturbance history. This database currently contains 18,791 records from 2009 sites, making it the largest and most comprehensive database of C stocks and flows in forest ecosystems globally. The tropical component of the database will be published in conjunction with a manuscript that is currently under review (Anderson-Teixeira et al., in review). Database development continues, and we hope to maintain a dynamic instance of the entiremore » (global) database.« less

Designing and Developing a NASA Research Projects Knowledge Base and Implementing Knowledge Management and Discovery Techniques

NASA Astrophysics Data System (ADS)

Dabiru, L.; O'Hara, C. G.; Shaw, D.; Katragadda, S.; Anderson, D.; Kim, S.; Shrestha, B.; Aanstoos, J.; Frisbie, T.; Policelli, F.; Keblawi, N.

2006-12-01

The Research Project Knowledge Base (RPKB) is currently being designed and will be implemented in a manner that is fully compatible and interoperable with enterprise architecture tools developed to support NASA's Applied Sciences Program. Through user needs assessment, collaboration with Stennis Space Center, Goddard Space Flight Center, and NASA's DEVELOP Staff personnel insight to information needs for the RPKB were gathered from across NASA scientific communities of practice. To enable efficient, consistent, standard, structured, and managed data entry and research results compilation a prototype RPKB has been designed and fully integrated with the existing NASA Earth Science Systems Components database. The RPKB will compile research project and keyword information of relevance to the six major science focus areas, 12 national applications, and the Global Change Master Directory (GCMD). The RPKB will include information about projects awarded from NASA research solicitations, project investigator information, research publications, NASA data products employed, and model or decision support tools used or developed as well as new data product information. The RPKB will be developed in a multi-tier architecture that will include a SQL Server relational database backend, middleware, and front end client interfaces for data entry. The purpose of this project is to intelligently harvest the results of research sponsored by the NASA Applied Sciences Program and related research program results. We present various approaches for a wide spectrum of knowledge discovery of research results, publications, projects, etc. from the NASA Systems Components database and global information systems and show how this is implemented in SQL Server database. The application of knowledge discovery is useful for intelligent query answering and multiple-layered database construction. Using advanced EA tools such as the Earth Science Architecture Tool (ESAT), RPKB will enable NASA and partner agencies to efficiently identify the significant results for new experiment directions and principle investigators to formulate experiment directions for new proposals.

Biodiversity's big wet secret: the global distribution of marine biological records reveals chronic under-exploration of the deep pelagic ocean.

PubMed

Webb, Thomas J; Vanden Berghe, Edward; O'Dor, Ron

2010-08-02

Understanding the distribution of marine biodiversity is a crucial first step towards the effective and sustainable management of marine ecosystems. Recent efforts to collate location records from marine surveys enable us to assemble a global picture of recorded marine biodiversity. They also effectively highlight gaps in our knowledge of particular marine regions. In particular, the deep pelagic ocean--the largest biome on Earth--is chronically under-represented in global databases of marine biodiversity. We use data from the Ocean Biogeographic Information System to plot the position in the water column of ca 7 million records of marine species occurrences. Records from relatively shallow waters dominate this global picture of recorded marine biodiversity. In addition, standardising the number of records from regions of the ocean differing in depth reveals that regardless of ocean depth, most records come either from surface waters or the sea bed. Midwater biodiversity is drastically under-represented. The deep pelagic ocean is the largest habitat by volume on Earth, yet it remains biodiversity's big wet secret, as it is hugely under-represented in global databases of marine biological records. Given both its value in the provision of a range of ecosystem services, and its vulnerability to threats including overfishing and climate change, there is a pressing need to increase our knowledge of Earth's largest ecosystem.

An analysis of IGBP global land-cover characterization process

USGS Publications Warehouse

Loveland, Thomas R.; Zhu, Zhiliang; Ohlen, Donald O.; Brown, Jesslyn F.; Reed, Bradley C.; Yang, Limin

1999-01-01

The international Geosphere Biosphere Programme (IGBP) has called for the development of improved global land-cover data for use in increasingly sophisticated global environmental models. To meet this need, the staff of the U.S. Geological Survey and the University of Nebraska-Lincoln developed and applied a global land-cover characterization methodology using 1992-1993 1-km resolution Advanced Very High Resolution Radiometer (AVHRR) and other spatial data. The methodology, based on unsupervised classification with extensive postclassification refinement, yielded a multi-layer database consisting of eight land-cover data sets, descriptive attributes, and source data. An independent IGBP accuracy assessment reports a global accuracy of 73.5 percent, and continental results vary from 63 percent to 83 percent. Although data quality, methodology, interpreter performance, and logistics affected the results, significant problems were associated with the relationship between AVHRR data and fine-scale, spectrally similar land-cover patterns in complex natural or disturbed landscapes.

A remote sensing based vegetation classification logic for global land cover analysis

USGS Publications Warehouse

Running, Steven W.; Loveland, Thomas R.; Pierce, Lars L.; Nemani, R.R.; Hunt, E. Raymond

1995-01-01

This article proposes a simple new logic for classifying global vegetation. The critical features of this classification are that 1) it is based on simple, observable, unambiguous characteristics of vegetation structure that are important to ecosystem biogeochemistry and can be measured in the field for validation, 2) the structural characteristics are remotely sensible so that repeatable and efficient global reclassifications of existing vegetation will be possible, and 3) the defined vegetation classes directly translate into the biophysical parameters of interest by global climate and biogeochemical models. A first test of this logic for the continental United States is presented based on an existing 1 km AVHRR normalized difference vegetation index database. Procedures for solving critical remote sensing problems needed to implement the classification are discussed. Also, some inferences from this classification to advanced vegetation biophysical variables such as specific leaf area and photosynthetic capacity useful to global biogeochemical modeling are suggested.

Development of the Global Earthquake Model’s neotectonic fault database

USGS Publications Warehouse

Christophersen, Annemarie; Litchfield, Nicola; Berryman, Kelvin; Thomas, Richard; Basili, Roberto; Wallace, Laura; Ries, William; Hayes, Gavin P.; Haller, Kathleen M.; Yoshioka, Toshikazu; Koehler, Richard D.; Clark, Dan; Wolfson-Schwehr, Monica; Boettcher, Margaret S.; Villamor, Pilar; Horspool, Nick; Ornthammarath, Teraphan; Zuñiga, Ramon; Langridge, Robert M.; Stirling, Mark W.; Goded, Tatiana; Costa, Carlos; Yeats, Robert

2015-01-01

The Global Earthquake Model (GEM) aims to develop uniform, openly available, standards, datasets and tools for worldwide seismic risk assessment through global collaboration, transparent communication and adapting state-of-the-art science. GEM Faulted Earth (GFE) is one of GEM’s global hazard module projects. This paper describes GFE’s development of a modern neotectonic fault database and a unique graphical interface for the compilation of new fault data. A key design principle is that of an electronic field notebook for capturing observations a geologist would make about a fault. The database is designed to accommodate abundant as well as sparse fault observations. It features two layers, one for capturing neotectonic faults and fold observations, and the other to calculate potential earthquake fault sources from the observations. In order to test the flexibility of the database structure and to start a global compilation, five preexisting databases have been uploaded to the first layer and two to the second. In addition, the GFE project has characterised the world’s approximately 55,000 km of subduction interfaces in a globally consistent manner as a basis for generating earthquake event sets for inclusion in earthquake hazard and risk modelling. Following the subduction interface fault schema and including the trace attributes of the GFE database schema, the 2500-km-long frontal thrust fault system of the Himalaya has also been characterised. We propose the database structure to be used widely, so that neotectonic fault data can make a more complete and beneficial contribution to seismic hazard and risk characterisation globally.

A framework for global river flood risk assessments

NASA Astrophysics Data System (ADS)

Winsemius, H. C.; Van Beek, L. P. H.; Jongman, B.; Ward, P. J.; Bouwman, A.

2012-08-01

There is an increasing need for strategic global assessments of flood risks in current and future conditions. In this paper, we propose a framework for global flood risk assessment for river floods, which can be applied in current conditions, as well as in future conditions due to climate and socio-economic changes. The framework's goal is to establish flood hazard and impact estimates at a high enough resolution to allow for their combination into a risk estimate. The framework estimates hazard at high resolution (~1 km2) using global forcing datasets of the current (or in scenario mode, future) climate, a global hydrological model, a global flood routing model, and importantly, a flood extent downscaling routine. The second component of the framework combines hazard with flood impact models at the same resolution (e.g. damage, affected GDP, and affected population) to establish indicators for flood risk (e.g. annual expected damage, affected GDP, and affected population). The framework has been applied using the global hydrological model PCR-GLOBWB, which includes an optional global flood routing model DynRout, combined with scenarios from the Integrated Model to Assess the Global Environment (IMAGE). We performed downscaling of the hazard probability distributions to 1 km2 resolution with a new downscaling algorithm, applied on Bangladesh as a first case-study application area. We demonstrate the risk assessment approach in Bangladesh based on GDP per capita data, population, and land use maps for 2010 and 2050. Validation of the hazard and damage estimates has been performed using the Dartmouth Flood Observatory database and damage estimates from the EM-DAT database and World Bank sources. We discuss and show sensitivities of the estimated risks with regard to the use of different climate input sets, decisions made in the downscaling algorithm, and different approaches to establish impact models.

Global Database on Donation and Transplantation: goals, methods and critical issues (www.transplant-observatory.org).

PubMed

Mahillo, Beatriz; Carmona, Mar; Álvarez, Marina; Noel, Luc; Matesanz, Rafael

2013-04-01

The Global Database on Donation and Transplantation represents the most comprehensive source to date of worldwide data concerning activities in organ donation and transplantation derived from official sources, as well as information on legal and organizational aspects. The objectives are to collect, analyse and disseminate this kind of information of the WHO Member States and to facilitate a network of focal persons in the field of transplantation. They are responsible for providing the legislative and organizational aspects and the annual activity practices through a specific questionnaire. 104 out of the 194 WHO Member States that cover the 90% of the global population contribute to this project.Although we know the numerous limitations and biases as a result of the different interpretations of the questions, based on cultural factors and language, there is no other similar approach to collect information on donation and transplantation practices all over the world. The knowledge of demand for transplantation, availability of deceased and living donor organs and the access to transplantation is essential to monitor global trends in transplantation needs and donor organ availability. Information regarding the existence of regulatory oversight is fundamental to ensure the ethical practice of organ donation and transplantation. Copyright © 2013 Elsevier Inc. All rights reserved.

Intercontinental dispersal of HIV-1 subtype B associated with transmission among men who have sex with men in Japan.

PubMed

Takebe, Yutaka; Naito, Yuki; Raghwani, Jayna; Fearnhill, Esther; Sano, Takako; Kusagawa, Shigeru; Mbisa, Jean L; Zhang, Hongyi; Matano, Tetsuro; Brown, Andrew J Leigh; Pybus, Oliver G; Dunn, David; Kondo, Makiko

2014-09-01

Transmission clusters of HIV-1 subtype B uniquely associated with the epidemic among men who have sex with men (MSM) in East Asia have recently been identified. Using the Los Alamos HIV sequence database and the UK HIV drug resistance database, we explored possible links between HIV MSM epidemics in East Asia and the rest of the world by using phylogenetic and molecular clock analyses. We found that JP.MSM.B-1, a subtype B MSM variant that accounts for approximately one-third of the infections among Japanese MSM, was detected worldwide, in the United Kingdom (n=13), mainland China (n=3), the United States, Germany, Canada, and Taiwan (n=1 each). Interestingly, 10 United Kingdom samples plus two from Germany and the United States formed a distinct monophyletic subgroup within JP.MSM.B-1. The estimated divergence times of JP.MSM.B-1 and the latter subgroup were ∼1989 and ∼1999, respectively. These dates suggest that JP.MSM.B-1 was circulating for many years in Japan among MSM before disseminating to other countries, most likely through global MSM networks. A significant number of other Asian MSM HIV lineages were also detected in the UK HIV drug resistance database. Our study provides insight into the regional and global dispersal of Asian MSM HIV lineages. Further study of these strains is warranted to elucidate viral migration and the interrelationship of HIV epidemics on a global scale. We previously identified several transmission clusters of HIV-1 subtype B uniquely associated with the epidemic among men who have sex with men (MSM) in East Asia. Using the Los Alamos HIV sequence database and the UK HIV drug resistance database, we explored the possible interplay of HIV MSM epidemics in the different geographic regions and found previously unrecognized interrelationships among the HIV-1 epidemics in East Asia, the United Kingdom, and the rest of the world. Our study provides insight into the regional and global dispersal of Asian MSM HIV lineages and highlights the importance of strengthening HIV monitoring efforts and the need for implementing effective control measures to reduce HIV transmission on a global scale. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Synchronising data sources and filling gaps by global hydrological modelling

NASA Astrophysics Data System (ADS)

Pimentel, Rafael; Crochemore, Louise; Hasan, Abdulghani; Pineda, Luis; Isberg, Kristina; Arheimer, Berit

2017-04-01

The advances in remote sensing in the last decades combined with the creation of different open hydrological databases have generated a very large amount of useful information for global hydrological modelling. Working with this huge number of datasets to set up a global hydrological model can constitute challenges such as multiple data formats and big heterogeneity on spatial and temporal resolutions. Different initiatives have made effort to homogenize some of these data sources, i.e. GRDC (Global Runoff Data Center), HYDROSHEDS (SHuttle Elevation Derivatives at multiple Scales), GLWD (Global Lake and Wetland Database) for runoff, watershed delineation and water bodies respectively. However, not all the related issues are covered or homogenously solved at the global scale and new information is continuously available to complete the current ones. This work presents synchronising efforts to make use of different global data sources needed to set up the semi-distributed hydrological model HYPE (Hydrological Predictions for the Environment) at the global scale. These data sources included: topography for watershed delineation, gauging stations of river flow, and extention of lakes, flood plains and land cover classes. A new database with approximately 100 000 subbasins, with an average area of 1000 km2, was created. Subbasin delineation was done combining Global Width Database for Large River (GWD-LR), SRTM high-resolution elevation data and a number of forced points of interest (gauging station of river flow, lakes, reservoirs, urban areas, nuclear plants and areas with high risk of flooding). Regarding flow data, the locations of GRDC stations were checked or placed along the river network when necessary, and completed with available information from national water services in data-sparse regions. A screening of doublet stations and associated time series was necessary to efficiently combine the two types of data sources. A total number about 21 000 stations were considered as forced point. In the case of lakes, some updating relating with location and area, of GLWD was done using esa (European Space Agency) gridded water bodies dataset. Many of the original lakes were shifted in relation with topography and some of them change their extension since the creation of the database. Moreover, the location of the outlet of all these lakes was also calculated. A new definition of global floodplain areas was also included. The land covers provided by ESA and some elevation criteria were used to define elevation land classes (ELC) using for the definition of the properties of each one of the proposed subbasin. All these new features: a) the inclusion of river width in the delineation of the subbasin, going further in the consideration of river shape; b) the merging of several data bases of gauging stations of river flow into an extended global dataset; c) coherent location of the lakes, river networks and floodplains; and d) a new definition of hydrological response units also considering elevation of the subbasins, will contribute to a better implementation of global hydrological models. The first results of world-wide HYPE will be shown but the model will yet not be fully calibrated using multi-sources of observed data and information. The ambition is to receive a global scale model which can also be useful at local scales. Starting with the global picture and then going into the details.

The global record of local iron geochemical data from Proterozoic through Paleozoic basins

NASA Astrophysics Data System (ADS)

Sperling, E. A.; Wolock, C.; Johnston, D. T.; Knoll, A. H.

2013-12-01

Iron-based redox proxies represent one of the most mature tools available to sedimentary geochemists. These techniques, which benefit from decades of refinement, are based on the fact that rocks deposited under anoxic conditions tend to be enriched in highly-reactive iron. However, there are myriad local controls on the development of anoxia, and no local section is an exemplar for the global ocean. The global signal must thus be determined using techniques like those developed to solve an analogous problem in paleobiology: the inference of global diversity patterns through time from faunas seen in local stratigraphic sections. Here we analyze a dataset of over 4000 iron speciation measurements (including over 600 de novo analyses) to better understand redox changes from the Proterozoic through the Paleozoic Era. Preliminary database analyses yield interesting observations. We find that although anoxic water columns in the middle Proterozoic were dominantly ferruginous, there was a statistical tendency towards euxinia not seen in early Neoproterozoic or Ediacaran data. Also, we find that in the Neoproterozoic oceans, oxic depositional environments-the likely home for early animals-have exceptionally low pyrite contents, and by inference low levels of porewater sulfide. This runs contrary to notions of sulfide stress on early metazoans. Finally, the current database of iron speciation data does not support an Ediacaran or Cambrian oxygenation event. This conclusion is of course only as sharp as the ability of the Fe-proxy database to track dissolved oxygen and does not rule out the possibility of a small-magnitude change in oxygen. It does suggest, however, that if changing pO2 facilitated animal diversification it did so by a limited rise past critical ecological thresholds, such as seen in the modern Oxygen Minimum Zones benthos. Oxygen increase to modern levels thus becomes a Paleozoic problem, and one in need of better sampling if a database approach is to be employed.

Global building inventory for earthquake loss estimation and risk management

USGS Publications Warehouse

Jaiswal, Kishor; Wald, David; Porter, Keith

2010-01-01

We develop a global database of building inventories using taxonomy of global building types for use in near-real-time post-earthquake loss estimation and pre-earthquake risk analysis, for the U.S. Geological Survey’s Prompt Assessment of Global Earthquakes for Response (PAGER) program. The database is available for public use, subject to peer review, scrutiny, and open enhancement. On a country-by-country level, it contains estimates of the distribution of building types categorized by material, lateral force resisting system, and occupancy type (residential or nonresidential, urban or rural). The database draws on and harmonizes numerous sources: (1) UN statistics, (2) UN Habitat’s demographic and health survey (DHS) database, (3) national housing censuses, (4) the World Housing Encyclopedia and (5) other literature.

Benefits of rebuilding global marine fisheries outweigh costs.

PubMed

Sumaila, Ussif Rashid; Cheung, William; Dyck, Andrew; Gueye, Kamal; Huang, Ling; Lam, Vicky; Pauly, Daniel; Srinivasan, Thara; Swartz, Wilf; Watson, Reginald; Zeller, Dirk

2012-01-01

Global marine fisheries are currently underperforming, largely due to overfishing. An analysis of global databases finds that resource rent net of subsidies from rebuilt world fisheries could increase from the current negative US$13 billion to positive US$54 billion per year, resulting in a net gain of US$600 to US$1,400 billion in present value over fifty years after rebuilding. To realize this gain, governments need to implement a rebuilding program at a cost of about US$203 (US$130-US$292) billion in present value. We estimate that it would take just 12 years after rebuilding begins for the benefits to surpass the cost. Even without accounting for the potential boost to recreational fisheries, and ignoring ancillary and non-market values that would likely increase, the potential benefits of rebuilding global fisheries far outweigh the costs.

Benefits of Rebuilding Global Marine Fisheries Outweigh Costs

PubMed Central

Sumaila, Ussif Rashid; Cheung, William; Dyck, Andrew; Gueye, Kamal; Huang, Ling; Lam, Vicky; Pauly, Daniel; Srinivasan, Thara; Swartz, Wilf; Watson, Reginald; Zeller, Dirk

2012-01-01

Global marine fisheries are currently underperforming, largely due to overfishing. An analysis of global databases finds that resource rent net of subsidies from rebuilt world fisheries could increase from the current negative US$13 billion to positive US$54 billion per year, resulting in a net gain of US$600 to US$1,400 billion in present value over fifty years after rebuilding. To realize this gain, governments need to implement a rebuilding program at a cost of about US$203 (US$130–US$292) billion in present value. We estimate that it would take just 12 years after rebuilding begins for the benefits to surpass the cost. Even without accounting for the potential boost to recreational fisheries, and ignoring ancillary and non-market values that would likely increase, the potential benefits of rebuilding global fisheries far outweigh the costs. PMID:22808187

Orthographic and Phonological Neighborhood Databases across Multiple Languages.

PubMed

Marian, Viorica

2017-01-01

The increased globalization of science and technology and the growing number of bilinguals and multilinguals in the world have made research with multiple languages a mainstay for scholars who study human function and especially those who focus on language, cognition, and the brain. Such research can benefit from large-scale databases and online resources that describe and measure lexical, phonological, orthographic, and semantic information. The present paper discusses currently-available resources and underscores the need for tools that enable measurements both within and across multiple languages. A general review of language databases is followed by a targeted introduction to databases of orthographic and phonological neighborhoods. A specific focus on CLEARPOND illustrates how databases can be used to assess and compare neighborhood information across languages, to develop research materials, and to provide insight into broad questions about language. As an example of how using large-scale databases can answer questions about language, a closer look at neighborhood effects on lexical access reveals that not only orthographic, but also phonological neighborhoods can influence visual lexical access both within and across languages. We conclude that capitalizing upon large-scale linguistic databases can advance, refine, and accelerate scientific discoveries about the human linguistic capacity.

Mapping the impacts of thermoelectric power generation: a global, spatially explicit database

NASA Astrophysics Data System (ADS)

Raptis, Catherine; Pfister, Stephan

2017-04-01

Thermoelectric power generation is associated with environmental pressures resulting from emissions to air and water, as well as water consumption. The need to achieve global coverage in related studies has become pressing in view of climate change. At the same time, the ability to quantify impacts from power production on a high resolution remains pertinent, given their highly regionalized nature, particularly when it comes to water-related impacts. Efforts towards global coverage have increased in recent years, but most work on the impacts of global electricity production presents a coarse geographical differentiation. Over the past few years we have begun a concerted effort to create and make available a global georeferenced inventory of thermoelectric power plant operational characteristics and emissions, by modelling the relevant processes on the highest possible level: that of a generating unit. Our work extends and enhances a commercially available global power plant database, and so far includes: - Georeferencing the generating units and populating the gaps in their steam properties. - Identifying the cooling system for 92% of the global installed thermoelectric power capacity. - Using the completed steam property data, along with local environmental temperature data, to systematically solve the Rankine cycle for each generating unit, involving: i) distinguishing between simple, reheat, and cogenerative cycles, and accounting for particularities in nuclear power cycles; ii) accounting for the effect of different cooling systems (once-through, recirculating (wet tower), dry cooling) on the thermodynamic cycle. One of the direct outcomes of solving the Rankine cycle is the cycle efficiency, an indispensable parameter in any study related to power production, including the quantification of air emissions and water consumption. Another direct output, for those units employing once-through cooling, is the rate of heat rejection to water, which can lead to thermal pollution. The opportunities afforded by the creation of this comprehensive database are numerous, including its use in integrated studies of electricity production and environmental burden, on local or global scales. The quantification, on the highest possible geographical and technological resolution, of all the different current impacts caused by thermoelectric power generation is crucial in order to conduct a proper assessment of the trade-offs in impacts in future scenario studies including technological changes, and to avoid burden-shifting. Here, we present the progress made in the building of the database so far, as well as the results of its application in a worldwide study of the thermal stress of rivers from the heat rejected by power plants using once-through cooling systems.

GISD

Science.gov Websites

GISD Global invasive species database Home About the GISD How to use Contacts 100 of the worst ) Bromus rubens Line drawing of Bromus rubens (USDA-NRCS PLANTS Database / Hitchcock, A.S. (rev. A. Chase GISD ISPRA SNPA The Global Invasive Species Database was developed and is managed by the Invasive

The global compendium of Aedes aegypti and Ae. albopictus occurrence

NASA Astrophysics Data System (ADS)

Kraemer, Moritz U. G.; Sinka, Marianne E.; Duda, Kirsten A.; Mylne, Adrian; Shearer, Freya M.; Brady, Oliver J.; Messina, Jane P.; Barker, Christopher M.; Moore, Chester G.; Carvalho, Roberta G.; Coelho, Giovanini E.; van Bortel, Wim; Hendrickx, Guy; Schaffner, Francis; Wint, G. R. William; Elyazar, Iqbal R. F.; Teng, Hwa-Jen; Hay, Simon I.

2015-07-01

Aedes aegypti and Ae. albopictus are the main vectors transmitting dengue and chikungunya viruses. Despite being pathogens of global public health importance, knowledge of their vectors’ global distribution remains patchy and sparse. A global geographic database of known occurrences of Ae. aegypti and Ae. albopictus between 1960 and 2014 was compiled. Herein we present the database, which comprises occurrence data linked to point or polygon locations, derived from peer-reviewed literature and unpublished studies including national entomological surveys and expert networks. We describe all data collection processes, as well as geo-positioning methods, database management and quality-control procedures. This is the first comprehensive global database of Ae. aegypti and Ae. albopictus occurrence, consisting of 19,930 and 22,137 geo-positioned occurrence records respectively. Both datasets can be used for a variety of mapping and spatial analyses of the vectors and, by inference, the diseases they transmit.

The global compendium of Aedes aegypti and Ae. albopictus occurrence

PubMed Central

Kraemer, Moritz U. G.; Sinka, Marianne E.; Duda, Kirsten A.; Mylne, Adrian; Shearer, Freya M.; Brady, Oliver J.; Messina, Jane P.; Barker, Christopher M.; Moore, Chester G.; Carvalho, Roberta G.; Coelho, Giovanini E.; Van Bortel, Wim; Hendrickx, Guy; Schaffner, Francis; Wint, G. R. William; Elyazar, Iqbal R. F.; Teng, Hwa-Jen; Hay, Simon I.

2015-01-01

Aedes aegypti and Ae. albopictus are the main vectors transmitting dengue and chikungunya viruses. Despite being pathogens of global public health importance, knowledge of their vectors’ global distribution remains patchy and sparse. A global geographic database of known occurrences of Ae. aegypti and Ae. albopictus between 1960 and 2014 was compiled. Herein we present the database, which comprises occurrence data linked to point or polygon locations, derived from peer-reviewed literature and unpublished studies including national entomological surveys and expert networks. We describe all data collection processes, as well as geo-positioning methods, database management and quality-control procedures. This is the first comprehensive global database of Ae. aegypti and Ae. albopictus occurrence, consisting of 19,930 and 22,137 geo-positioned occurrence records respectively. Both datasets can be used for a variety of mapping and spatial analyses of the vectors and, by inference, the diseases they transmit. PMID:26175912

Modernization of the International Volcanic Ash Website - a global resource for ashfall preparedness and impact guidance.

NASA Astrophysics Data System (ADS)

Wallace, K.; Leonard, G.; Stewart, C.; Wilson, T. M.; Randall, M.; Stovall, W. K.

2015-12-01

The internationally collaborative volcanic ash website (http://volcanoes.usgs.gov/ash/) has been an important global information resource for ashfall preparedness and impact guidance since 2004. Recent volcanic ashfalls with significant local, regional, and global impacts highlighted the need to improve the website to make it more accessible and pertinent to users worldwide. Recently, the Volcanic Ash Impacts Working Group (Cities and Volcanoes Commission of IAVCEI) redesigned and modernized the website. Improvements include 1) a database-driven back end, 2) reorganized menu navigation, 3) language translation, 4) increased downloadable content, 5) addition of ash-impact case studies, 7) expanded and updated references , 8) an image database, and 9) inclusion of cooperating organization's logos. The database-driven platform makes the website more dynamic and efficient to operate and update. New menus provide information about specific impact topics (buildings, transportation, power, health, agriculture, water and waste water, equipment and communications, clean up) and updated content has been added throughout all topics. A new "for scientists" menu includes information on ash collection and analysis. Website translation using Google translate will significantly increase user base. Printable resources (e.g. checklists, pamphlets, posters) provide information to people without Internet access. Ash impact studies are used to improve mitigation measures during future eruptions, and links to case studies will assist communities' preparation and response plans. The Case Studies menu is intended to be a living topic area, growing as new case studies are published. A database of all images from the website allows users to access larger resolution images and additional descriptive details. Logos clarify linkages among key contributors and assure users that the site is authoritative and science-based.

Infectious diseases and global warming: Tracking disease incidence rates globally

DOE Office of Scientific and Technical Information (OSTI.GOV)

Low, N.C.

1995-09-01

Given the increasing importance of impact of global warming on public health, there is no global database system to monitor infectious disease and disease in general, and to which global data of climate change and environmental factors, such as temperature, greenhouse gases, and human activities, e.g., coastal development, deforestation, can be calibrated, investigated and correlated. The author proposes the diseases incidence rates be adopted as the basic global measure of morbidity of infectious diseases. The importance of a correctly chosen measure of morbidity of disease is presented. The importance of choosing disease incidence rates as the measure of morbidity andmore » the mathematical foundation of which are discussed. The author further proposes the establishment of a global database system to track the incidence rates of infectious diseases. Only such a global system can be used to calibrate and correlate other globally tracked climatic, greenhouse gases and environmental data. The infrastructure and data sources for building such a global database is discussed.« less

A new natural hazards data-base for volcanic ash and SO2 from global satellite remote sensing measurements

NASA Astrophysics Data System (ADS)

Prata, F.; Stebel, K.

2013-12-01

Over the last few years there has been a recognition of the utility of satellite measurements to identify and track volcanic emissions that present a natural hazard to human populations. Mitigation of the volcanic hazard to life and the environment requires understanding of the properties of volcanic emissions, identifying the hazard in near real-time and being able to provide timely and accurate forecasts to affected areas. Amongst the many ways to measure volcanic emissions, satellite remote sensing is capable of providing global quantitative retrievals of important microphysical parameters such as ash mass loading, ash particle effective radius, infrared optical depth, SO2 partial and total column abundance, plume altitude, aerosol optical depth and aerosol absorbing index. The eruption of Eyjafjallajokull in April-May, 2010 led to increased research and measurement programs to better characterize properties of volcanic ash and the need to establish a data-base in which to store and access these data was confirmed. The European Space Agency (ESA) has recognized the importance of having a quality controlled data-base of satellite retrievals and has funded an activity (VAST) to develop novel remote sensing retrieval schemes and a data-base, initially focused on several recent hazardous volcanic eruptions. As a first step, satellite retrievals for the eruptions of Eyjafjallajokull, Grimsvotn, Puyhue-Cordon Caulle, Nabro, Merapi, Okmok, Kasatochi and Sarychev Peak are being considered. Here we describe the data, retrievals and methods being developed for the data-base. Three important applications of the data-base are illustrated related to the ash/aviation problem, to the impact of the Merapi volcanic eruption on the local population, and to estimate SO2 fluxes from active volcanoes-as a means to diagnose future unrest. Dispersion model simulations are also being included in the data-base. In time, data from conventional in situ sampling instruments, airborne and ground-based remote sensing platforms and other meta-data (bulk ash and gas properties, volcanic setting, volcanic eruption chronologies, hazards and impacts etc.) will be added. The data-base has the potential to provide the natural hazards community with the first dynamic atmospheric volcanic hazards map and will be a valuable tool particularly for global transport.

High Tech High School Interns Develop a Mid-Ocean Ridge Database for Research and Education

NASA Astrophysics Data System (ADS)

Staudigel, D.; Delaney, R.; Staudigel, H.; Koppers, A. A.; Miller, S. P.

2004-12-01

Mid-ocean ridges (MOR) represent one of the most important geographical and geological features on planet Earth. MORs are the locations where plates spread apart, they are the locations of the majority of the Earths' volcanoes that harbor some of the most extreme life forms. These concepts attract much research, but mid-ocean ridges are still effectively underrepresented in the Earth science class rooms. As two High Tech High School students, we began an internship at Scripps to develop a database for mid-ocean ridges as a resource for science and education. This Ridge Catalog will be accessible via http://earthref.org/databases/RC/ and applies a similar structure, design and data archival principle as the Seamount Catalog under EarthRef.org. Major research goals of this project include the development of (1) an archival structure for multibeam and sidescan data, standard bathymetric maps (including ODP-DSDP drill site and dredge locations) or any other arbitrary digital objects relating to MORs, and (2) to compile a global data set for some of the most defining characteristics of every ridge segment including ridge segment length, depth and azimuth and half spreading rates. One of the challenges included the need of making MOR data useful to the scientist as well as the teacher in the class room. Since the basic structure follows the design of the Seamount Catalog closely, we could move our attention to the basic data population of the database. We have pulled together multibeam data for the MOR segments from various public archives (SIOExplorer, SIO-GDC, NGDC, Lamont), and pre-processed it for public use. In particular, we have created individual bathymetric maps for each ridge segment, while merging the multibeam data with global satellite bathymetry data from Smith & Sandwell (1997). The global scale of this database will give it the ability to be used for any number of applications, from cruise planning to data

Global Ground Motion Prediction Equations Program | Just another WordPress

Science.gov Websites

Motion Task 2: Compile and Critically Review GMPEs Task 3: Select or Derive a Global Set of GMPEs Task 6 : Design the Specifications to Compile a Global Database of Soil Classification Task 5: Build a Database of Update on PEER's Global GMPEs Project from recent workshop in Turkey Posted on June 11, 2012 During May

A global building inventory for earthquake loss estimation and risk management

USGS Publications Warehouse

Jaiswal, K.; Wald, D.; Porter, K.

2010-01-01

We develop a global database of building inventories using taxonomy of global building types for use in near-real-time post-earthquake loss estimation and pre-earthquake risk analysis, for the U.S. Geological Survey's Prompt Assessment of Global Earthquakes for Response (PAGER) program. The database is available for public use, subject to peer review, scrutiny, and open enhancement. On a country-by-country level, it contains estimates of the distribution of building types categorized by material, lateral force resisting system, and occupancy type (residential or nonresidential, urban or rural). The database draws on and harmonizes numerous sources: (1) UN statistics, (2) UN Habitat's demographic and health survey (DHS) database, (3) national housing censuses, (4) the World Housing Encyclopedia and (5) other literature. ?? 2010, Earthquake Engineering Research Institute.

Computer-aided system for detecting runway incursions

NASA Astrophysics Data System (ADS)

Sridhar, Banavar; Chatterji, Gano B.

1994-07-01

A synthetic vision system for enhancing the pilot's ability to navigate and control the aircraft on the ground is described. The system uses the onboard airport database and images acquired by external sensors. Additional navigation information needed by the system is provided by the Inertial Navigation System and the Global Positioning System. The various functions of the system, such as image enhancement, map generation, obstacle detection, collision avoidance, guidance, etc., are identified. The available technologies, some of which were developed at NASA, that are applicable to the aircraft ground navigation problem are noted. Example images of a truck crossing the runway while the aircraft flies close to the runway centerline are described. These images are from a sequence of images acquired during one of the several flight experiments conducted by NASA to acquire data to be used for the development and verification of the synthetic vision concepts. These experiments provide a realistic database including video and infrared images, motion states from the Inertial Navigation System and the Global Positioning System, and camera parameters.

Towards an integrated set of surface meterological observations for climate science and applications

NASA Astrophysics Data System (ADS)

Dunn, Robert; Thorne, Peter

2017-04-01

We cannot predict what is not observed, and we cannot analyse what is not archived. To meet current scientific and societal demands, as well as future requirements for climate services, it is vital that the management and curation of land-based meteorological data holdings is improved. A comprehensive global set of data holdings, of known provenance, integrated across both climate variable and timescale are required to meet the wide range of user needs. Presently, the land-based holdings are highly fractured into global, region and national holdings for different variables and timescales, from a variety of sources, and in a mixture of formats. We present a high level overview, based on broad community input, of the steps that are required to bring about this integration and progress towards such a database. Any long-term, international, program creating such an integrated database will transform the our collective ability to provide societally relevant research, analysis and predictions across the globe.

Transparent Global Seismic Hazard and Risk Assessment

NASA Astrophysics Data System (ADS)

Smolka, Anselm; Schneider, John; Pinho, Rui; Crowley, Helen

2013-04-01

Vulnerability to earthquakes is increasing, yet advanced reliable risk assessment tools and data are inaccessible to most, despite being a critical basis for managing risk. Also, there are few, if any, global standards that allow us to compare risk between various locations. The Global Earthquake Model (GEM) is a unique collaborative effort that aims to provide organizations and individuals with tools and resources for transparent assessment of earthquake risk anywhere in the world. By pooling data, knowledge and people, GEM acts as an international forum for collaboration and exchange, and leverages the knowledge of leading experts for the benefit of society. Sharing of data and risk information, best practices, and approaches across the globe is key to assessing risk more effectively. Through global projects, open-source IT development and collaborations with more than 10 regions, leading experts are collaboratively developing unique global datasets, best practice, open tools and models for seismic hazard and risk assessment. Guided by the needs and experiences of governments, companies and citizens at large, they work in continuous interaction with the wider community. A continuously expanding public-private partnership constitutes the GEM Foundation, which drives the collaborative GEM effort. An integrated and holistic approach to risk is key to GEM's risk assessment platform, OpenQuake, that integrates all above-mentioned contributions and will become available towards the end of 2014. Stakeholders worldwide will be able to calculate, visualise and investigate earthquake risk, capture new data and to share their findings for joint learning. Homogenized information on hazard can be combined with data on exposure (buildings, population) and data on their vulnerability, for loss assessment around the globe. Furthermore, for a true integrated view of seismic risk, users can add social vulnerability and resilience indices to maps and estimate the costs and benefits of different risk management measures. The following global data, models and methodologies will be available in the platform. Some of these will be released to the public already before, such as the ISC-GEM global instrumental catalogue (released January 2013). Datasets: • Global Earthquake History Catalogue [1000-1903] • Global Instrumental Catalogue [1900-2009] • Global Geodetic Strain Rate Model • Global Active Fault Database • Tectonic Regionalisation • Buildings and Population Database • Earthquake Consequences Database • Physical Vulnerability Database • Socio-Economic Vulnerability and Resilience Indicators Models: • Seismic Source Models • Ground Motion (Attenuation) Models • Physical Exposure Models • Physical Vulnerability Models • Composite Index Models (social vulnerability, resilience, indirect loss) The aforementioned models developed under the GEM framework will be combined to produce estimates of hazard and risk at a global scale. Furthermore, building on many ongoing efforts and knowledge of scientists worldwide, GEM will integrate state-of-the-art data, models, results and open-source tools into a single platform that is to serve as a "clearinghouse" on seismic risk. The platform will continue to increase in value, in particular for use in local contexts, through contributions and collaborations with scientists and organisations worldwide.

A Web-based tool for UV irradiance data: predictions for European and Southeast Asian sites.

PubMed

Kift, Richard; Webb, Ann R; Page, John; Rimmer, John; Janjai, Serm

2006-01-01

There are a range of UV models available, but one needs significant pre-existing knowledge and experience in order to be able to use them. In this article a comparatively simple Web-based model developed for the SoDa (Integration and Exploitation of Networked Solar Radiation Databases for Environment Monitoring) project is presented. This is a clear-sky model with modifications for cloud effects. To determine if the model produces realistic UV data the output is compared with 1 year sets of hourly measurements at sites in the United Kingdom and Thailand. The accuracy of the output depends on the input, but reasonable results were obtained with the use of the default database inputs and improved when pyranometer instead of modeled data provided the global radiation input needed to estimate the UV. The average modeled values of UV for the UK site were found to be within 10% of measurements. For the tropical sites in Thailand the average modeled values were within 1120% of measurements for the four sites with the use of the default SoDa database values. These results improved when pyranometer data and TOMS ozone data from 2002 replaced the standard SoDa database values, reducing the error range for all four sites to less than 15%.

Surfacing the deep data of taxonomy

PubMed Central

Page, Roderic D. M.

2016-01-01

Abstract Taxonomic databases are perpetuating approaches to citing literature that may have been appropriate before the Internet, often being little more than digitised 5 × 3 index cards. Typically the original taxonomic literature is either not cited, or is represented in the form of a (typically abbreviated) text string. Hence much of the “deep data” of taxonomy, such as the original descriptions, revisions, and nomenclatural actions are largely hidden from all but the most resourceful users. At the same time there are burgeoning efforts to digitise the scientific literature, and much of this newly available content has been assigned globally unique identifiers such as Digital Object Identifiers (DOIs), which are also the identifier of choice for most modern publications. This represents an opportunity for taxonomic databases to engage with digitisation efforts. Mapping the taxonomic literature on to globally unique identifiers can be time consuming, but need be done only once. Furthermore, if we reuse existing identifiers, rather than mint our own, we can start to build the links between the diverse data that are needed to support the kinds of inference which biodiversity informatics aspires to support. Until this practice becomes widespread, the taxonomic literature will remain balkanized, and much of the knowledge that it contains will linger in obscurity. PMID:26877663

Development of 2010 national land cover database for the Nepal.

PubMed

Uddin, Kabir; Shrestha, Him Lal; Murthy, M S R; Bajracharya, Birendra; Shrestha, Basanta; Gilani, Hammad; Pradhan, Sudip; Dangol, Bikash

2015-01-15

Land cover and its change analysis across the Hindu Kush Himalayan (HKH) region is realized as an urgent need to support diverse issues of environmental conservation. This study presents the first and most complete national land cover database of Nepal prepared using public domain Landsat TM data of 2010 and replicable methodology. The study estimated that 39.1% of Nepal is covered by forests and 29.83% by agriculture. Patch and edge forests constituting 23.4% of national forest cover revealed proximate biotic interferences over the forests. Core forests constituted 79.3% of forests of Protected areas where as 63% of area was under core forests in the outside protected area. Physiographic regions wise forest fragmentation analysis revealed specific conservation requirements for productive hill and mid mountain regions. Comparative analysis with Landsat TM based global land cover product showed difference of the order of 30-60% among different land cover classes stressing the need for significant improvements for national level adoption. The online web based land cover validation tool is developed for continual improvement of land cover product. The potential use of the data set for national and regional level sustainable land use planning strategies and meeting several global commitments also highlighted. Copyright © 2014 Elsevier Ltd. All rights reserved.

Structure and software tools of AIDA.

PubMed

Duisterhout, J S; Franken, B; Witte, F

1987-01-01

AIDA consists of a set of software tools to allow for fast development and easy-to-maintain Medical Information Systems. AIDA supports all aspects of such a system both during development and operation. It contains tools to build and maintain forms for interactive data entry and on-line input validation, a database management system including a data dictionary and a set of run-time routines for database access, and routines for querying the database and output formatting. Unlike an application generator, the user of AIDA may select parts of the tools to fulfill his needs and program other subsystems not developed with AIDA. The AIDA software uses as host language the ANSI-standard programming language MUMPS, an interpreted language embedded in an integrated database and programming environment. This greatly facilitates the portability of AIDA applications. The database facilities supported by AIDA are based on a relational data model. This data model is built on top of the MUMPS database, the so-called global structure. This relational model overcomes the restrictions of the global structure regarding string length. The global structure is especially powerful for sorting purposes. Using MUMPS as a host language allows the user an easy interface between user-defined data validation checks or other user-defined code and the AIDA tools. AIDA has been designed primarily for prototyping and for the construction of Medical Information Systems in a research environment which requires a flexible approach. The prototyping facility of AIDA operates terminal independent and is even to a great extent multi-lingual. Most of these features are table-driven; this allows on-line changes in the use of terminal type and language, but also causes overhead. AIDA has a set of optimizing tools by which it is possible to build a faster, but (of course) less flexible code from these table definitions. By separating the AIDA software in a source and a run-time version, one is able to write implementation-specific code which can be selected and loaded by a special source loader, being part of the AIDA software. This feature is also accessible for maintaining software on different sites and on different installations.

Biodiversity's Big Wet Secret: The Global Distribution of Marine Biological Records Reveals Chronic Under-Exploration of the Deep Pelagic Ocean

PubMed Central

Webb, Thomas J.; Vanden Berghe, Edward; O'Dor, Ron

2010-01-01

Background Understanding the distribution of marine biodiversity is a crucial first step towards the effective and sustainable management of marine ecosystems. Recent efforts to collate location records from marine surveys enable us to assemble a global picture of recorded marine biodiversity. They also effectively highlight gaps in our knowledge of particular marine regions. In particular, the deep pelagic ocean – the largest biome on Earth – is chronically under-represented in global databases of marine biodiversity. Methodology/Principal Findings We use data from the Ocean Biogeographic Information System to plot the position in the water column of ca 7 million records of marine species occurrences. Records from relatively shallow waters dominate this global picture of recorded marine biodiversity. In addition, standardising the number of records from regions of the ocean differing in depth reveals that regardless of ocean depth, most records come either from surface waters or the sea bed. Midwater biodiversity is drastically under-represented. Conclusions/Significance The deep pelagic ocean is the largest habitat by volume on Earth, yet it remains biodiversity's big wet secret, as it is hugely under-represented in global databases of marine biological records. Given both its value in the provision of a range of ecosystem services, and its vulnerability to threats including overfishing and climate change, there is a pressing need to increase our knowledge of Earth's largest ecosystem. PMID:20689845

Global Data Toolset (GDT)

USGS Publications Warehouse

Cress, Jill J.; Riegle, Jodi L.

2007-01-01

According to the United Nations Environment Programme World Conservation Monitoring Centre (UNEP-WCMC) approximately 60 percent of the data contained in the World Database on Protected Areas (WDPA) has missing or incomplete boundary information. As a result, global analyses based on the WDPA can be inaccurate, and professionals responsible for natural resource planning and priority setting must rely on incomplete geospatial data sets. To begin to address this problem the World Data Center for Biodiversity and Ecology, in cooperation with the U. S. Geological Survey (USGS) Rocky Mountain Geographic Science Center (RMGSC), the National Biological Information Infrastructure (NBII), the Global Earth Observation System, and the Inter-American Biodiversity Information Network (IABIN) sponsored a Protected Area (PA) workshop in Asuncion, Paraguay, in November 2007. The primary goal of this workshop was to train representatives from eight South American countries on the use of the Global Data Toolset (GDT) for reviewing and editing PA data. Use of the GDT will allow PA experts to compare their national data to other data sets, including non-governmental organization (NGO) and WCMC data, in order to highlight inaccuracies or gaps in the data, and then to apply any needed edits, especially in the delineation of the PA boundaries. In addition, familiarizing the participants with the web-enabled GDT will allow them to maintain and improve their data after the workshop. Once data edits have been completed the GDT will also allow the country authorities to perform any required review and validation processing. Once validated, the data can be used to update the global WDPA and IABIN databases, which will enhance analysis on global and regional levels.

The GED4GEM project: development of a Global Exposure Database for the Global Earthquake Model initiative

USGS Publications Warehouse

Gamba, P.; Cavalca, D.; Jaiswal, K.S.; Huyck, C.; Crowley, H.

2012-01-01

In order to quantify earthquake risk of any selected region or a country of the world within the Global Earthquake Model (GEM) framework (www.globalquakemodel.org/), a systematic compilation of building inventory and population exposure is indispensable. Through the consortium of leading institutions and by engaging the domain-experts from multiple countries, the GED4GEM project has been working towards the development of a first comprehensive publicly available Global Exposure Database (GED). This geospatial exposure database will eventually facilitate global earthquake risk and loss estimation through GEM’s OpenQuake platform. This paper provides an overview of the GED concepts, aims, datasets, and inference methodology, as well as the current implementation scheme, status and way forward.

The global transmission network of HIV-1.

PubMed

Wertheim, Joel O; Leigh Brown, Andrew J; Hepler, N Lance; Mehta, Sanjay R; Richman, Douglas D; Smith, Davey M; Kosakovsky Pond, Sergei L

2014-01-15

Human immunodeficiency virus type 1 (HIV-1) is pandemic, but its contemporary global transmission network has not been characterized. A better understanding of the properties and dynamics of this network is essential for surveillance, prevention, and eventual eradication of HIV. Here, we apply a simple and computationally efficient network-based approach to all publicly available HIV polymerase sequences in the global database, revealing a contemporary picture of the spread of HIV-1 within and between countries. This approach automatically recovered well-characterized transmission clusters and extended other clusters thought to be contained within a single country across international borders. In addition, previously undescribed transmission clusters were discovered. Together, these clusters represent all known modes of HIV transmission. The extent of international linkage revealed by our comprehensive approach demonstrates the need to consider the global diversity of HIV, even when describing local epidemics. Finally, the speed of this method allows for near-real-time surveillance of the pandemic's progression.

Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillance.

PubMed

Tang, Julian W; Lam, Tommy T; Zaraket, Hassan; Lipkin, W Ian; Drews, Steven J; Hatchette, Todd F; Heraud, Jean-Michel; Koopmans, Marion P

2017-10-01

Together with influenza, the non-influenza RNA respiratory viruses (NIRVs), which include respiratory syncytial virus, parainfluenza viruses, coronavirus, rhinovirus, and human metapneumovirus, represent a considerable global health burden, as recognised by WHO's Battle against Respiratory Viruses initiative. By contrast with influenza viruses, little is known about the contemporaneous global diversity of these viruses, and the relevance of such for development of pharmaceutical interventions. Although far less advanced than for influenza, antiviral drugs and vaccines are in different stages of development for several of these viruses, but no interventions have been licensed. This scarcity of global genetic data represents a substantial knowledge gap and impediment to the eventual licensing of new antiviral drugs and vaccines for NIRVs. Enhanced genetic surveillance will assist and boost research and development into new antiviral drugs and vaccines for these viruses. Additionally, understanding the global diversity of respiratory viruses is also part of emerging disease preparedness, because non-human coronaviruses and paramyxoviruses have been listed as priority concerns in a recent WHO research and development blueprint initiative for emerging infectious diseases. In this Personal View, we explain further the rationale for expanding the genetic database of NIRVs and emphasise the need for greater investment in this area of research. Copyright © 2017 Elsevier Ltd. All rights reserved.

Mentoring, Training and Support to Global Health Innovators: A Scoping Review

PubMed Central

Cho, Dan-Bi; Cole, Donald; Simiyu, Ken; Luong, Winnie; Neufeld, Vic

2013-01-01

Global health innovators must navigate substantial complexities to successfully develop, implement and sustain global health innovations with impact through application of an Integrated Innovation™ approach. We sought to examine the nature of the literature and evidence around mentoring, training and support of global health innovators. We conducted a scoping review searching eight databases with terms capturing different kinds of innovation and support. Assessment of relevance and mapping was completed by two reviewers, with interpretation by the review team. Twenty-eight relevant papers provided perspectives on fostering global health innovators and innovation. Fifteen included empirical data on supports to global health innovators involving a wide range of innovators. Eight included documentation of outcomes but without designs to determine effectiveness. The diverse mentoring, training and support activities included: business incubators, support organizations and centres for entrepreneurship, technology transfer and intellectual property management, internship programs for business skill development, initiatives to bridge industry and researchers, and platforms for South-led innovation for global health. We propose the cultivation of a pipeline of global health innovators to increase the number of appropriate, sustainable innovations with impact in global health. Further empirical work on how to effectively support global health innovators is needed. PMID:23985118

Mapping the Rainforest of the Sea: Global Coral Reef Maps for Global Conservation

NASA Technical Reports Server (NTRS)

Robinson, Julie A.

2006-01-01

Coral reefs are the center of marine biodiversity, yet are under threat with an estimated 60% of coral reef habitats considered at risk by the World Resources Institute. The location and extent of coral reefs in the world are the basic information required for resource management and as a baseline for monitoring change. A NASA sponsored partnership between remote sensing scientists, international agencies and NGOs, has developed a new generation of global reef maps based on data collected by satellites. The effort, dubbed the Millennium Coral Reef Map aims to develop new methods for wide distribution of voluminous satellite data of use to the conservation and management communities. We discuss the tradeoffs between remote sensing data sources, mapping objectives, and the needs for conservation and resource management. SeaWiFS data were used to produce a composite global shallow bathymetry map at 1 km resolution. Landsat 7/ETM+ data acquisition plans were modified to collect global reefs and new operational methods were designed to generate the firstever global coral reef geomorphology map. We discuss the challenges encountered to build these databases and in implementing the geospatial data distribution strategies. Conservation applications include a new assessment of the distribution of the world s marine protected areas (UNEPWCMC), improved spatial resolution in the Reefs at Risk analysis for the Caribbean (WRI), and a global basemap for the Census of Marine Life's OBIS database. The Millennium Coral Reef map and digital image archive will pay significant dividends for local and regional conservation projects around the globe. Complete details of the project are available at http://eol.jsc.nasa.gov/reefs.

Status and distribution of mangrove forests of the world using earth observation satellite data

USGS Publications Warehouse

Giri, C.; Ochieng, E.; Tieszen, L.L.; Zhu, Z.; Singh, A.; Loveland, T.; Masek, J.; Duke, N.

2011-01-01

Aim Our scientific understanding of the extent and distribution of mangrove forests of the world is inadequate. The available global mangrove databases, compiled using disparate geospatial data sources and national statistics, need to be improved. Here, we mapped the status and distributions of global mangroves using recently available Global Land Survey (GLS) data and the Landsat archive.Methods We interpreted approximately 1000 Landsat scenes using hybrid supervised and unsupervised digital image classification techniques. Each image was normalized for variation in solar angle and earth-sun distance by converting the digital number values to the top-of-the-atmosphere reflectance. Ground truth data and existing maps and databases were used to select training samples and also for iterative labelling. Results were validated using existing GIS data and the published literature to map 'true mangroves'.Results The total area of mangroves in the year 2000 was 137,760 km2 in 118 countries and territories in the tropical and subtropical regions of the world. Approximately 75% of world's mangroves are found in just 15 countries, and only 6.9% are protected under the existing protected areas network (IUCN I-IV). Our study confirms earlier findings that the biogeographic distribution of mangroves is generally confined to the tropical and subtropical regions and the largest percentage of mangroves is found between 5?? N and 5?? S latitude.Main conclusions We report that the remaining area of mangrove forest in the world is less than previously thought. Our estimate is 12.3% smaller than the most recent estimate by the Food and Agriculture Organization (FAO) of the United Nations. We present the most comprehensive, globally consistent and highest resolution (30 m) global mangrove database ever created. We developed and used better mapping techniques and data sources and mapped mangroves with better spatial and thematic details than previous studies. ?? 2010 Blackwell Publishing Ltd.

Status and distribution of mangrove forests of the world using earth observation satellite data

USGS Publications Warehouse

Giri, Chandra; Ochieng, E.; Tieszen, Larry L.; Zhu, Zhi-Liang; Singh, Ashbindu; Loveland, Thomas R.; Masek, Jeffery G.; Duke, Norm

2011-01-01

Aim  Our scientific understanding of the extent and distribution of mangrove forests of the world is inadequate. The available global mangrove databases, compiled using disparate geospatial data sources and national statistics, need to be improved. Here, we mapped the status and distributions of global mangroves using recently available Global Land Survey (GLS) data and the Landsat archive. Methods  We interpreted approximately 1000 Landsat scenes using hybrid supervised and unsupervised digital image classification techniques. Each image was normalized for variation in solar angle and earth–sun distance by converting the digital number values to the top-of-the-atmosphere reflectance. Ground truth data and existing maps and databases were used to select training samples and also for iterative labelling. Results were validated using existing GIS data and the published literature to map ‘true mangroves’. Results  The total area of mangroves in the year 2000 was 137,760 km2 in 118 countries and territories in the tropical and subtropical regions of the world. Approximately 75% of world's mangroves are found in just 15 countries, and only 6.9% are protected under the existing protected areas network (IUCN I-IV). Our study confirms earlier findings that the biogeographic distribution of mangroves is generally confined to the tropical and subtropical regions and the largest percentage of mangroves is found between 5° N and 5° S latitude. Main conclusions  We report that the remaining area of mangrove forest in the world is less than previously thought. Our estimate is 12.3% smaller than the most recent estimate by the Food and Agriculture Organization (FAO) of the United Nations. We present the most comprehensive, globally consistent and highest resolution (30 m) global mangrove database ever created. We developed and used better mapping techniques and data sources and mapped mangroves with better spatial and thematic details than previous studies.

Terrestrial Sediments of the Earth: Development of a Global Unconsolidated Sediments Map Database (GUM)

NASA Astrophysics Data System (ADS)

Börker, J.; Hartmann, J.; Amann, T.; Romero-Mujalli, G.

2018-04-01

Mapped unconsolidated sediments cover half of the global land surface. They are of considerable importance for many Earth surface processes like weathering, hydrological fluxes or biogeochemical cycles. Ignoring their characteristics or spatial extent may lead to misinterpretations in Earth System studies. Therefore, a new Global Unconsolidated Sediments Map database (GUM) was compiled, using regional maps specifically representing unconsolidated and quaternary sediments. The new GUM database provides insights into the regional distribution of unconsolidated sediments and their properties. The GUM comprises 911,551 polygons and describes not only sediment types and subtypes, but also parameters like grain size, mineralogy, age and thickness where available. Previous global lithological maps or databases lacked detail for reported unconsolidated sediment areas or missed large areas, and reported a global coverage of 25 to 30%, considering the ice-free land area. Here, alluvial sediments cover about 23% of the mapped total ice-free area, followed by aeolian sediments (˜21%), glacial sediments (˜20%), and colluvial sediments (˜16%). A specific focus during the creation of the database was on the distribution of loess deposits, since loess is highly reactive and relevant to understand geochemical cycles related to dust deposition and weathering processes. An additional layer compiling pyroclastic sediment is added, which merges consolidated and unconsolidated pyroclastic sediments. The compilation shows latitudinal abundances of sediment types related to climate of the past. The GUM database is available at the PANGAEA database (https://doi.org/10.1594/PANGAEA.884822).

Health-related rehabilitation services: assessing the global supply of and need for human resources

PubMed Central

2011-01-01

Background Human resources for rehabilitation are often a neglected component of health services strengthening and health workforce development. This may be partly related to weaknesses in the available research and evidence to inform advocacy and programmatic strategies. The objective of this study was to quantitatively describe the global situation in terms of supply of and need for human resources for health-related rehabilitation services, as a basis for strategy development of the workforce in physical and rehabilitation medicine. Methods Data for assessing supply of and need for rehabilitative personnel were extracted and analyzed from statistical databases maintained by the World Health Organization and other national and international health information sources. Standardized classifications were used to enhance cross-national comparability of findings. Results Large differences were found across countries and regions between assessed need for services requiring health workers associated to physical and rehabilitation medicine against estimated supply of health personnel skilled in rehabilitation services. Despite greater need, low- and middle-income countries tended to report less availability of skilled health personnel, although the strength of the supply-need relationship varied across geographical and economic country groupings. Conclusion The evidence base on human resources for health-related rehabilitation services remains fragmented, the result of limited availability and use of quality, comparable data and information within and across countries. This assessment offered the first global baseline, intended to catalyze further research that can be translated into evidence to support human resources for rehabilitation policy and practice. PMID:22004560

Potash: a global overview of evaporate-related potash resources, including spatial databases of deposits, occurrences, and permissive tracts: Chapter S in Global mineral resource assessment

USGS Publications Warehouse

Orris, Greta J.; Cocker, Mark D.; Dunlap, Pamela; Wynn, Jeff C.; Spanski, Gregory T.; Briggs, Deborah A.; Gass, Leila; Bliss, James D.; Bolm, Karen S.; Yang, Chao; Lipin, Bruce R.; Ludington, Stephen; Miller, Robert J.; Słowakiewicz, Mirosław

2014-01-01

This report describes a global, evaporite-related potash deposits and occurrences database and a potash tracts database. Chapter 1 summarizes potash resource history and use. Chapter 2 describes a global potash deposits and occurrences database, which contains more than 900 site records. Chapter 3 describes a potash tracts database, which contains 84 tracts with geology permissive for the presence of evaporite-hosted potash resources, including areas with active evaporite-related potash production, areas with known mineralization that has not been quantified or exploited, and areas with potential for undiscovered potash resources. Chapter 4 describes geographic information system (GIS) data files that include (1) potash deposits and occurrences data, (2) potash tract data, (3) reference databases for potash deposit and tract data, and (4) representative graphics of geologic features related to potash tracts and deposits. Summary descriptive models for stratabound potash-bearing salt and halokinetic potash-bearing salt are included in appendixes A and B, respectively. A glossary of salt- and potash-related terms is contained in appendix C and a list of database abbreviations is given in appendix D. Appendix E describes GIS data files, and appendix F is a guide to using the geodatabase.

Fine-Root Ecology Database (FRED): A Global Collection of Root Trait Data with Coincident Site, Vegetation, Edaphic, and Climatic Data, Version 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Iversen, C. M.; Powell, A. S.; McCormack, M. L.

To address the need for a centralized root trait database, we are compiling the Fine-Root Ecology Database (FRED) from published literature and unpublished data. FRED Version 1 (FRED 1.0) currently houses more than 70,000 observations of root traits and their associated site, vegetation, edaphic, and climatic conditions from across the globe (see image below, which shows the more than 1000 distinct locations associated with observations in FRED 1.0). Data collection is ongoing and will continue for the foreseeable future. The more than 300 root traits currently housed in FRED 1.0 are described in detail here. FRED is focused on finemore » roots (less than 2 mm), as coarse roots are studied using different methodology, often at very different scales, and have different traits and trait interpretations.« less

The Eruption Forecasting Information System (EFIS) database project

NASA Astrophysics Data System (ADS)

Ogburn, Sarah; Harpel, Chris; Pesicek, Jeremy; Wellik, Jay; Pallister, John; Wright, Heather

2016-04-01

The Eruption Forecasting Information System (EFIS) project is a new initiative of the U.S. Geological Survey-USAID Volcano Disaster Assistance Program (VDAP) with the goal of enhancing VDAP's ability to forecast the outcome of volcanic unrest. The EFIS project seeks to: (1) Move away from relying on the collective memory to probability estimation using databases (2) Create databases useful for pattern recognition and for answering common VDAP questions; e.g. how commonly does unrest lead to eruption? how commonly do phreatic eruptions portend magmatic eruptions and what is the range of antecedence times? (3) Create generic probabilistic event trees using global data for different volcano 'types' (4) Create background, volcano-specific, probabilistic event trees for frequently active or particularly hazardous volcanoes in advance of a crisis (5) Quantify and communicate uncertainty in probabilities A major component of the project is the global EFIS relational database, which contains multiple modules designed to aid in the construction of probabilistic event trees and to answer common questions that arise during volcanic crises. The primary module contains chronologies of volcanic unrest, including the timing of phreatic eruptions, column heights, eruptive products, etc. and will be initially populated using chronicles of eruptive activity from Alaskan volcanic eruptions in the GeoDIVA database (Cameron et al. 2013). This database module allows us to query across other global databases such as the WOVOdat database of monitoring data and the Smithsonian Institution's Global Volcanism Program (GVP) database of eruptive histories and volcano information. The EFIS database is in the early stages of development and population; thus, this contribution also serves as a request for feedback from the community.

Internationally coordinated glacier monitoring: strategy and datasets

NASA Astrophysics Data System (ADS)

Hoelzle, Martin; Armstrong, Richard; Fetterer, Florence; Gärtner-Roer, Isabelle; Haeberli, Wilfried; Kääb, Andreas; Kargel, Jeff; Nussbaumer, Samuel; Paul, Frank; Raup, Bruce; Zemp, Michael

2014-05-01

Internationally coordinated monitoring of long-term glacier changes provide key indicator data about global climate change and began in the year 1894 as an internationally coordinated effort to establish standardized observations. Today, world-wide monitoring of glaciers and ice caps is embedded within the Global Climate Observing System (GCOS) in support of the United Nations Framework Convention on Climate Change (UNFCCC) as an important Essential Climate Variable (ECV). The Global Terrestrial Network for Glaciers (GTN-G) was established in 1999 with the task of coordinating measurements and to ensure the continuous development and adaptation of the international strategies to the long-term needs of users in science and policy. The basic monitoring principles must be relevant, feasible, comprehensive and understandable to a wider scientific community as well as to policy makers and the general public. Data access has to be free and unrestricted, the quality of the standardized and calibrated data must be high and a combination of detailed process studies at selected field sites with global coverage by satellite remote sensing is envisaged. Recently a GTN-G Steering Committee was established to guide and advise the operational bodies responsible for the international glacier monitoring, which are the World Glacier Monitoring Service (WGMS), the US National Snow and Ice Data Center (NSIDC), and the Global Land Ice Measurements from Space (GLIMS) initiative. Several online databases containing a wealth of diverse data types having different levels of detail and global coverage provide fast access to continuously updated information on glacier fluctuation and inventory data. For world-wide inventories, data are now available through (a) the World Glacier Inventory containing tabular information of about 130,000 glaciers covering an area of around 240,000 km2, (b) the GLIMS-database containing digital outlines of around 118,000 glaciers with different time stamps and (c) the Randolph Glacier Inventory (RGI), a new and globally complete digital dataset of outlines from about 180,000 glaciers with some meta-information, which has been used for many applications relating to the IPCC AR5 report. Concerning glacier changes, a database (Fluctuations of Glaciers) exists containing information about mass balance, front variations including past reconstructed time series, geodetic changes and special events. Annual mass balance reporting contains information for about 125 glaciers with a subset of 37 glaciers with continuous observational series since 1980 or earlier. Front variation observations of around 1800 glaciers are available from most of the mountain ranges world-wide. This database was recently updated with 26 glaciers having an unprecedented dataset of length changes from from reconstructions of well-dated historical evidence going back as far as the 16th century. Geodetic observations of about 430 glaciers are available. The database is completed by a dataset containing information on special events including glacier surges, glacier lake outbursts, ice avalanches, eruptions of ice-clad volcanoes, etc. related to about 200 glaciers. A special database of glacier photographs contains 13,000 pictures from around 500 glaciers, some of them dating back to the 19th century. A key challenge is to combine and extend the traditional observations with fast evolving datasets from new technologies.

Using LUCAS topsoil database to estimate soil organic carbon content in local spectral libraries

NASA Astrophysics Data System (ADS)

Castaldi, Fabio; van Wesemael, Bas; Chabrillat, Sabine; Chartin, Caroline

2017-04-01

The quantification of the soil organic carbon (SOC) content over large areas is mandatory to obtain accurate soil characterization and classification, which can improve site specific management at local or regional scale exploiting the strong relationship between SOC and crop growth. The estimation of the SOC is not only important for agricultural purposes: in recent years, the increasing attention towards global warming highlighted the crucial role of the soil in the global carbon cycle. In this context, soil spectroscopy is a well consolidated and widespread method to estimate soil variables exploiting the interaction between chromophores and electromagnetic radiation. The importance of spectroscopy in soil science is reflected by the increasing number of large soil spectral libraries collected in the world. These large libraries contain soil samples derived from a consistent number of pedological regions and thus from different parent material and soil types; this heterogeneity entails, in turn, a large variability in terms of mineralogical and organic composition. In the light of the huge variability of the spectral responses to SOC content and composition, a rigorous classification process is necessary to subset large spectral libraries and to avoid the calibration of global models failing to predict local variation in SOC content. In this regard, this study proposes a method to subset the European LUCAS topsoil database into soil classes using a clustering analysis based on a large number of soil properties. The LUCAS database was chosen to apply a standardized multivariate calibration approach valid for large areas without the need for extensive field and laboratory work for calibration of local models. Seven soil classes were detected by the clustering analyses and the samples belonging to each class were used to calibrate specific partial least square regression (PLSR) models to estimate SOC content of three local libraries collected in Belgium (Loam belt and Wallonia) and Luxembourg. The three local libraries only consist of spectral data (199 samples) acquired using the same protocol as the one used for the LUCAS database. SOC was estimated with a good accuracy both within each local library (RMSE: 1.2 ÷ 5.4 g kg-1; RPD: 1.41 ÷ 2.06) and for the samples of the three libraries together (RMSE: 3.9 g kg-1; RPD: 2.47). The proposed approach could allow to estimate SOC everywhere in Europe only collecting spectra, without the need for chemical laboratory analyses, exploiting the potentiality of the LUCAS database and specific PLSR models.

Literacy Programmes with a Focus on Women to Reduce Gender Disparities: Case Studies from UNESCO Effective Literacy and Numeracy Practices Database (LitBase). http://www.unesco.org/uil/litbase/

ERIC Educational Resources Information Center

Kairies, Jan, Ed.

2013-01-01

Literacy is the foundation of lifelong learning and a crucial element in the universally recognised right to education. However, illiteracy continues to exist as a global challenge, and many individuals still lack the basic literacy skills that are needed to engage in further learning opportunities and for the economic and social development of…

The Global War on Terrorism: Analytical Support, Tools and Metrics of Assessment. MORS Workshop

DTIC Science & Technology

2005-08-11

is the matter of intelligence, as COL(P) Keller pointed out, we need to spend less time in the intelligence cycle on managing information and...models, decision aids: "named things " * Methodologies: potentially useful things "* Resources: databases, people, books? * Meta-data on tools * Develop a...experience. Only one member (Mr. Garry Greco) had served on the Joint Intelligence Task Force for Counter Terrorism. Although Gary heavily participated

Intimate partner violence, technology, and stalking.

PubMed

Southworth, Cynthia; Finn, Jerry; Dawson, Shawndell; Fraser, Cynthia; Tucker, Sarah

2007-08-01

This research note describes the use of a broad range of technologies in intimate partner stalking, including cordless and cellular telephones, fax machines, e-mail, Internet-based harassment, global positioning systems, spy ware, video cameras, and online databases. The concept of "stalking with technology" is reviewed, and the need for an expanded definition of cyberstalking is presented. Legal issues and advocacy-centered responses, including training, legal remedies, public policy issues, and technology industry practices, are discussed.

Evaluation of Online Information Sources on Alien Species in Europe: The Need of Harmonization and Integration

NASA Astrophysics Data System (ADS)

Gatto, Francesca; Katsanevakis, Stelios; Vandekerkhove, Jochen; Zenetos, Argyro; Cardoso, Ana Cristina

2013-06-01

Europe is severely affected by alien invasions, which impact biodiversity, ecosystem services, economy, and human health. A large number of national, regional, and global online databases provide information on the distribution, pathways of introduction, and impacts of alien species. The sufficiency and efficiency of the current online information systems to assist the European policy on alien species was investigated by a comparative analysis of occurrence data across 43 online databases. Large differences among databases were found which are partially explained by variations in their taxonomical, environmental, and geographical scopes but also by the variable efforts for continuous updates and by inconsistencies on the definition of "alien" or "invasive" species. No single database covered all European environments, countries, and taxonomic groups. In many European countries national databases do not exist, which greatly affects the quality of reported information. To be operational and useful to scientists, managers, and policy makers, online information systems need to be regularly updated through continuous monitoring on a country or regional level. We propose the creation of a network of online interoperable web services through which information in distributed resources can be accessed, aggregated and then used for reporting and further analysis at different geographical and political scales, as an efficient approach to increase the accessibility of information. Harmonization, standardization, conformity on international standards for nomenclature, and agreement on common definitions of alien and invasive species are among the necessary prerequisites.

The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts

Treesearch

L.N. Hudson; T. Newbold; S. Contu

2014-01-01

Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that...

NHEXAS PHASE I ARIZONA STUDY--STANDARD OPERATING PROCEDURE FOR GLOBAL CODING USED BY NHEXAS ARIZONA (HAND ENTRY) (UA-D-5.0)

EPA Science Inventory

The purpose of this SOP is to define the global coding scheme to used in the working and master databases. This procedure applies to all of the databases used during the Arizona NHEXAS project and the "Border" study. Keywords: data; coding; databases.

The National Human Exposu...

Kingfisher: a system for remote sensing image database management

NASA Astrophysics Data System (ADS)

Bruzzo, Michele; Giordano, Ferdinando; Dellepiane, Silvana G.

2003-04-01

At present retrieval methods in remote sensing image database are mainly based on spatial-temporal information. The increasing amount of images to be collected by the ground station of earth observing systems emphasizes the need for database management with intelligent data retrieval capabilities. The purpose of the proposed method is to realize a new content based retrieval system for remote sensing images database with an innovative search tool based on image similarity. This methodology is quite innovative for this application, at present many systems exist for photographic images, as for example QBIC and IKONA, but they are not able to extract and describe properly remote image content. The target database is set by an archive of images originated from an X-SAR sensor (spaceborne mission, 1994). The best content descriptors, mainly texture parameters, guarantees high retrieval performances and can be extracted without losses independently of image resolution. The latter property allows DBMS (Database Management System) to process low amount of information, as in the case of quick-look images, improving time performance and memory access without reducing retrieval accuracy. The matching technique has been designed to enable image management (database population and retrieval) independently of dimensions (width and height). Local and global content descriptors are compared, during retrieval phase, with the query image and results seem to be very encouraging.

Online drug databases: a new method to assess and compare inclusion of clinically relevant information.

PubMed

Silva, Cristina; Fresco, Paula; Monteiro, Joaquim; Rama, Ana Cristina Ribeiro

2013-08-01

Evidence-Based Practice requires health care decisions to be based on the best available evidence. The model "Information Mastery" proposes that clinicians should use sources of information that have previously evaluated relevance and validity, provided at the point of care. Drug databases (DB) allow easy and fast access to information and have the benefit of more frequent content updates. Relevant information, in the context of drug therapy, is that which supports safe and effective use of medicines. Accordingly, the European Guideline on the Summary of Product Characteristics (EG-SmPC) was used as a standard to evaluate the inclusion of relevant information contents in DB. To develop and test a method to evaluate relevancy of DB contents, by assessing the inclusion of information items deemed relevant for effective and safe drug use. Hierarchical organisation and selection of the principles defined in the EGSmPC; definition of criteria to assess inclusion of selected information items; creation of a categorisation and quantification system that allows score calculation; calculation of relative differences (RD) of scores for comparison with an "ideal" database, defined as the one that achieves the best quantification possible for each of the information items; pilot test on a sample of 9 drug databases, using 10 drugs frequently associated in literature with morbidity-mortality and also being widely consumed in Portugal. Main outcome measure Calculate individual and global scores for clinically relevant information items of drug monographs in databases, using the categorisation and quantification system created. A--Method development: selection of sections, subsections, relevant information items and corresponding requisites; system to categorise and quantify their inclusion; score and RD calculation procedure. B--Pilot test: calculated scores for the 9 databases; globally, all databases evaluated significantly differed from the "ideal" database; some DB performed better but performance was inconsistent at subsections level, within the same DB. The method developed allows quantification of the inclusion of relevant information items in DB and comparison with an "ideal database". It is necessary to consult diverse DB in order to find all the relevant information needed to support clinical drug use.

Domestic trends in malaria research and development in China and its global influence.

PubMed

Huang, Yang-Mu; Shi, Lu-Wen; She, Rui; Bai, Jing; Jiao, Shi-Yong; Guo, Yan

2017-01-10

Though many countries, including China, are moving towards malaria elimination, malaria remains a major global health threat. Due to the spread of antimalarial drug resistance and the need for innovative medical products during the elimination phase, further research and development (R&D) of innovative tools in both epidemic and elimination areas is needed. This study aims to identify the trends and gaps in malaria R&D in China, and aims to offer suggestions on how China can be more effectively involved in global malaria R&D. Quantitative analysis was carried out by collecting data on Chinese malaria-related research programmes between 1985 and 2014, invention patents in China from 1985 to 2014, and articles published by Chinese researchers in PubMed and Chinese databases from 2005 to 2014. All data were screened and extracted for numerical analysis and were categorized into basic sciences, drug/drug resistance, immunology/vaccines, or diagnostics/detection for chronological and subgroup comparisons. The number of malaria R&D activities have shown a trend of increase during the past 30 years, however these activities have fluctuated within the past few years. During the past 10 years, R&D on drug/drug resistance accounted for the highest percentages of research programmes (32.4%), articles (55.0% in PubMed and 50.6% in Chinese databases) and patents (45.5%). However, these R&D activities were mainly related to artemisinin. R&D on immunology/vaccines has been a continuous interest for China's public entities, but the focus remains on basic science. R&D in the area of high-efficiency diagnostics has been rarely seen or reported in China. China has long been devoted to malaria R&D in multiple areas, including drugs, drug resistance, immunology and vaccines. R&D on diagnostics has received significantly less attention, however, it should also be an area where China can make a contribution. More focus on malaria R&D is needed, especially in the area of diagnostics, if China would like to contribute in a more significant way to global malaria control and elimination.

Introducing the Global Fire WEather Database (GFWED)

NASA Astrophysics Data System (ADS)

Field, R. D.

2015-12-01

The Canadian Fire Weather Index (FWI) System is the mostly widely used fire danger rating system in the world. We have developed a global database of daily FWI System calculations beginning in 1980 called the Global Fire WEather Database (GFWED) gridded to a spatial resolution of 0.5° latitude by 2/3° longitude. Input weather data were obtained from the NASA Modern Era Retrospective-Analysis for Research (MERRA), and two different estimates of daily precipitation from rain gauges over land. FWI System Drought Code calculations from the gridded datasets were compared to calculations from individual weather station data for a representative set of 48 stations in North, Central and South America, Europe, Russia, Southeast Asia and Australia. Agreement between gridded calculations and the station-based calculations tended to be most different at low latitudes for strictly MERRA-based calculations. Strong biases could be seen in either direction: MERRA DC over the Mato Grosso in Brazil reached unrealistically high values exceeding DC=1500 during the dry season but was too low over Southeast Asia during the dry season. These biases are consistent with those previously-identified in MERRA's precipitation and reinforce the need to consider alternative sources of precipitation data. GFWED is being used by researchers around the world for analyzing historical relationships between fire weather and fire activity at large scales, in identifying large-scale atmosphere-ocean controls on fire weather, and calibration of FWI-based fire prediction models. These applications will be discussed. More information on GFWED can be found at http://data.giss.nasa.gov/impacts/gfwed/

Global seabird responses to forage fish depletion - One-third for the birds

USGS Publications Warehouse

Cury, Philippe M.; Boyd, Ian L.; Bonhommeau, Sylvain; Anker-Nilssen, Tycho; Crawford, Robert J.M.; Furness, Robert W.; Mills, James A.; Murphy, Eugene J.; Österblom, Henrik; Paleczny, Michelle; Piatt, John F.; Roux, Jean-Paul; Shannon, Lynne; Sydeman, William J.

2011-01-01

Determining the form of key predator-prey relationships is critical for understanding marine ecosystem dynamics. Using a comprehensive global database, we quantified the effect of fluctuations in food abundance on seabird breeding success. We identified a threshold in prey (fish and krill, termed “forage fish”) abundance below which seabirds experience consistently reduced and more variable productivity. This response was common to all seven ecosystems and 14 bird species examined within the Atlantic, Pacific, and Southern Oceans. The threshold approximated one-third of the maximum prey biomass observed in long-term studies. This provides an indicator of the minimal forage fish biomass needed to sustain seabird productivity over the long term.

Global seabird response to forage fish depletion--one-third for the birds.

PubMed

Cury, Philippe M; Boyd, Ian L; Bonhommeau, Sylvain; Anker-Nilssen, Tycho; Crawford, Robert J M; Furness, Robert W; Mills, James A; Murphy, Eugene J; Osterblom, Henrik; Paleczny, Michelle; Piatt, John F; Roux, Jean-Paul; Shannon, Lynne; Sydeman, William J

2011-12-23

Determining the form of key predator-prey relationships is critical for understanding marine ecosystem dynamics. Using a comprehensive global database, we quantified the effect of fluctuations in food abundance on seabird breeding success. We identified a threshold in prey (fish and krill, termed "forage fish") abundance below which seabirds experience consistently reduced and more variable productivity. This response was common to all seven ecosystems and 14 bird species examined within the Atlantic, Pacific, and Southern Oceans. The threshold approximated one-third of the maximum prey biomass observed in long-term studies. This provides an indicator of the minimal forage fish biomass needed to sustain seabird productivity over the long term.

The National Extreme Events Data and Research Center (NEED)

NASA Astrophysics Data System (ADS)

Gulledge, J.; Kaiser, D. P.; Wilbanks, T. J.; Boden, T.; Devarakonda, R.

2014-12-01

The Climate Change Science Institute at Oak Ridge National Laboratory (ORNL) is establishing the National Extreme Events Data and Research Center (NEED), with the goal of transforming how the United States studies and prepares for extreme weather events in the context of a changing climate. NEED will encourage the myriad, distributed extreme events research communities to move toward the adoption of common practices and will develop a new database compiling global historical data on weather- and climate-related extreme events (e.g., heat waves, droughts, hurricanes, etc.) and related information about impacts, costs, recovery, and available research. Currently, extreme event information is not easy to access and is largely incompatible and inconsistent across web sites. NEED's database development will take into account differences in time frames, spatial scales, treatments of uncertainty, and other parameters and variables, and leverage informatics tools developed at ORNL (i.e., the Metadata Editor [1] and Mercury [2]) to generate standardized, robust documentation for each database along with a web-searchable catalog. In addition, NEED will facilitate convergence on commonly accepted definitions and standards for extreme events data and will enable integrated analyses of coupled threats, such as hurricanes/sea-level rise/flooding and droughts/wildfires. Our goal and vision is that NEED will become the premiere integrated resource for the general study of extreme events. References: [1] Devarakonda, Ranjeet, et al. "OME: Tool for generating and managing metadata to handle BigData." Big Data (Big Data), 2014 IEEE International Conference on. IEEE, 2014. [2] Devarakonda, Ranjeet, et al. "Mercury: reusable metadata management, data discovery and access system." Earth Science Informatics 3.1-2 (2010): 87-94.

The GEM Global Active Faults Database: The growth and synthesis of a worldwide database of active structures for PSHA, research, and education

NASA Astrophysics Data System (ADS)

Styron, R. H.; Garcia, J.; Pagani, M.

2017-12-01

A global catalog of active faults is a resource of value to a wide swath of the geoscience, earthquake engineering, and hazards risk communities. Though construction of such a dataset has been attempted now and again through the past few decades, success has been elusive. The Global Earthquake Model (GEM) Foundation has been working on this problem, as a fundamental step in its goal of making a global seismic hazard model. Progress on the assembly of the database is rapid, with the concatenation of many national—, orogen—, and continental—scale datasets produced by different research groups throughout the years. However, substantial data gaps exist throughout much of the deforming world, requiring new mapping based on existing publications as well as consideration of seismicity, geodesy and remote sensing data. Thus far, new fault datasets have been created for the Caribbean and Central America, North Africa, and northeastern Asia, with Madagascar, Canada and a few other regions in the queue. The second major task, as formidable as the initial data concatenation, is the 'harmonization' of data. This entails the removal or recombination of duplicated structures, reconciliation of contrastinginterpretations in areas of overlap, and the synthesis of many different types of attributes or metadata into a consistent whole. In a project of this scale, the methods used in the database construction are as critical to project success as the data themselves. After some experimentation, we have settled on an iterative methodology that involves rapid accumulation of data followed by successive episodes of data revision, and a computer-scripted data assembly using GIS file formats that is flexible, reproducible, and as able as possible to cope with updates to the constituent datasets. We find that this approach of initially maximizing coverage and then increasing resolution is the most robust to regional data problems and the most amenable to continued updates and refinement. Combined with the public, open-source nature of this project, GEM is producing a resource that can continue to evolve with the changing knowledge and needs of the community.

European Geophysical Society (23rd) General Assembly, Annales Geophysicae, Part 4, Nonlinear Geophysics & Natural Hazards, Supplement 4 to Volume 16, Held in Nice, France on 20-24 April 1998

DTIC Science & Technology

1998-01-01

the power spectra of instrumental temperature data from the Global Summary of day database from time scales of 1 day to 100 years. Maritime sta- tions...continental-type spectrum to a maritime-type spectrum is investigated by averaging spectra from all stations in the database in 2°x2° grid squares...We present global and regional maps of the seismic intensity factor based on data from the NEIC Global Hypocenter Database from 1963-1994. The

SUSTAINABILITY. Response to Comment on "Planetary boundaries: Guiding human development on a changing planet".

PubMed

Gerten, Dieter; Rockström, Johan; Heinke, Jens; Steffen, Will; Richardson, Katherine; Cornell, Sarah

2015-06-12

Jaramillo and Destouni claim that freshwater consumption is beyond the planetary boundary, based on high estimates of water cycle components, different definitions of water consumption, and extrapolation from a single case study. The difference from our analysis, based on mainstream assessments of global water consumption, highlights the need for clearer definitions of water cycle components and improved models and databases. Copyright © 2015, American Association for the Advancement of Science.

Challenges in developing medicinal plant databases for sharing ethnopharmacological knowledge.

PubMed

Ningthoujam, Sanjoy Singh; Talukdar, Anupam Das; Potsangbam, Kumar Singh; Choudhury, Manabendra Dutta

2012-05-07

Major research contributions in ethnopharmacology have generated vast amount of data associated with medicinal plants. Computerized databases facilitate data management and analysis making coherent information available to researchers, planners and other users. Web-based databases also facilitate knowledge transmission and feed the circle of information exchange between the ethnopharmacological studies and public audience. However, despite the development of many medicinal plant databases, a lack of uniformity is still discernible. Therefore, it calls for defining a common standard to achieve the common objectives of ethnopharmacology. The aim of the study is to review the diversity of approaches in storing ethnopharmacological information in databases and to provide some minimal standards for these databases. Survey for articles on medicinal plant databases was done on the Internet by using selective keywords. Grey literatures and printed materials were also searched for information. Listed resources were critically analyzed for their approaches in content type, focus area and software technology. Necessity for rapid incorporation of traditional knowledge by compiling primary data has been felt. While citation collection is common approach for information compilation, it could not fully assimilate local literatures which reflect traditional knowledge. Need for defining standards for systematic evaluation, checking quality and authenticity of the data is felt. Databases focussing on thematic areas, viz., traditional medicine system, regional aspect, disease and phytochemical information are analyzed. Issues pertaining to data standard, data linking and unique identification need to be addressed in addition to general issues like lack of update and sustainability. In the background of the present study, suggestions have been made on some minimum standards for development of medicinal plant database. In spite of variations in approaches, existence of many overlapping features indicates redundancy of resources and efforts. As the development of global data in a single database may not be possible in view of the culture-specific differences, efforts can be given to specific regional areas. Existing scenario calls for collaborative approach for defining a common standard in medicinal plant database for knowledge sharing and scientific advancement. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

Searching bioremediation patents through Cooperative Patent Classification (CPC).

PubMed

Prasad, Rajendra

2016-03-01

Patent classification systems have traditionally evolved independently at each patent jurisdiction to classify patents handled by their examiners to be able to search previous patents while dealing with new patent applications. As patent databases maintained by them went online for free access to public as also for global search of prior art by examiners, the need arose for a common platform and uniform structure of patent databases. The diversity of different classification, however, posed problems of integrating and searching relevant patents across patent jurisdictions. To address this problem of comparability of data from different sources and searching patents, WIPO in the recent past developed what is known as International Patent Classification (IPC) system which most countries readily adopted to code their patents with IPC codes along with their own codes. The Cooperative Patent Classification (CPC) is the latest patent classification system based on IPC/European Classification (ECLA) system, developed by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO) which is likely to become a global standard. This paper discusses this new classification system with reference to patents on bioremediation.

Applications of Precipitation Feature Databases from GPM core and constellation Satellites

NASA Astrophysics Data System (ADS)

Liu, C.

2017-12-01

Using the observations from Global Precipitation Mission (GPM) core and constellation satellites, global precipitation was quantitatively described from the perspective of precipitation systems and their properties. This presentation will introduce the development of precipitation feature databases, and several scientific questions that have been tackled using this database, including the topics of global snow precipitation, extreme intensive convection, hail storms, extreme precipitation, and microphysical properties derived with dual frequency radars at the top of convective cores. As more and more observations of constellation satellites become available, it is anticipated that the precipitation feature approach will help to address a large variety of scientific questions in the future. For anyone who is interested, all the current precipitation feature databases are freely open to public at: http://atmos.tamucc.edu/trmm/.

The global one health paradigm: challenges and opportunities for tackling infectious diseases at the human, animal, and environment interface in low-resource settings.

PubMed

Gebreyes, Wondwossen A; Dupouy-Camet, Jean; Newport, Melanie J; Oliveira, Celso J B; Schlesinger, Larry S; Saif, Yehia M; Kariuki, Samuel; Saif, Linda J; Saville, William; Wittum, Thomas; Hoet, Armando; Quessy, Sylvain; Kazwala, Rudovick; Tekola, Berhe; Shryock, Thomas; Bisesi, Michael; Patchanee, Prapas; Boonmar, Sumalee; King, Lonnie J

2014-01-01

Zoonotic infectious diseases have been an important concern to humankind for more than 10,000 years. Today, approximately 75% of newly emerging infectious diseases (EIDs) are zoonoses that result from various anthropogenic, genetic, ecologic, socioeconomic, and climatic factors. These interrelated driving forces make it difficult to predict and to prevent zoonotic EIDs. Although significant improvements in environmental and medical surveillance, clinical diagnostic methods, and medical practices have been achieved in the recent years, zoonotic EIDs remain a major global concern, and such threats are expanding, especially in less developed regions. The current Ebola epidemic in West Africa is an extreme stark reminder of the role animal reservoirs play in public health and reinforces the urgent need for globally operationalizing a One Health approach. The complex nature of zoonotic diseases and the limited resources in developing countries are a reminder that the need for implementation of Global One Health in low-resource settings is crucial. The Veterinary Public Health and Biotechnology (VPH-Biotec) Global Consortium launched the International Congress on Pathogens at the Human-Animal Interface (ICOPHAI) in order to address important challenges and needs for capacity building. The inaugural ICOPHAI (Addis Ababa, Ethiopia, 2011) and the second congress (Porto de Galinhas, Brazil, 2013) were unique opportunities to share and discuss issues related to zoonotic infectious diseases worldwide. In addition to strong scientific reports in eight thematic areas that necessitate One Health implementation, the congress identified four key capacity-building needs: (1) development of adequate science-based risk management policies, (2) skilled-personnel capacity building, (3) accredited veterinary and public health diagnostic laboratories with a shared database, and (4) improved use of existing natural resources and implementation. The aim of this review is to highlight advances in key zoonotic disease areas and the One Health capacity needs.

The Global One Health Paradigm: Challenges and Opportunities for Tackling Infectious Diseases at the Human, Animal, and Environment Interface in Low-Resource Settings

PubMed Central

Gebreyes, Wondwossen A.; Dupouy-Camet, Jean; Newport, Melanie J.; Oliveira, Celso J. B.; Schlesinger, Larry S.; Saif, Yehia M.; Kariuki, Samuel; Saif, Linda J.; Saville, William; Wittum, Thomas; Hoet, Armando; Quessy, Sylvain; Kazwala, Rudovick; Tekola, Berhe; Shryock, Thomas; Bisesi, Michael; Patchanee, Prapas; Boonmar, Sumalee; King, Lonnie J.

2014-01-01

Zoonotic infectious diseases have been an important concern to humankind for more than 10,000 years. Today, approximately 75% of newly emerging infectious diseases (EIDs) are zoonoses that result from various anthropogenic, genetic, ecologic, socioeconomic, and climatic factors. These interrelated driving forces make it difficult to predict and to prevent zoonotic EIDs. Although significant improvements in environmental and medical surveillance, clinical diagnostic methods, and medical practices have been achieved in the recent years, zoonotic EIDs remain a major global concern, and such threats are expanding, especially in less developed regions. The current Ebola epidemic in West Africa is an extreme stark reminder of the role animal reservoirs play in public health and reinforces the urgent need for globally operationalizing a One Health approach. The complex nature of zoonotic diseases and the limited resources in developing countries are a reminder that the need for implementation of Global One Health in low-resource settings is crucial. The Veterinary Public Health and Biotechnology (VPH-Biotec) Global Consortium launched the International Congress on Pathogens at the Human-Animal Interface (ICOPHAI) in order to address important challenges and needs for capacity building. The inaugural ICOPHAI (Addis Ababa, Ethiopia, 2011) and the second congress (Porto de Galinhas, Brazil, 2013) were unique opportunities to share and discuss issues related to zoonotic infectious diseases worldwide. In addition to strong scientific reports in eight thematic areas that necessitate One Health implementation, the congress identified four key capacity-building needs: (1) development of adequate science-based risk management policies, (2) skilled-personnel capacity building, (3) accredited veterinary and public health diagnostic laboratories with a shared database, and (4) improved use of existing natural resources and implementation. The aim of this review is to highlight advances in key zoonotic disease areas and the One Health capacity needs. PMID:25393303

Understanding Global Change: Tools for exploring Earth processes and biotic change through time

NASA Astrophysics Data System (ADS)

Bean, J. R.; White, L. D.; Berbeco, M.

2014-12-01

Teaching global change is one of the great pedagogical challenges of our day because real understanding entails integrating a variety of concepts from different scientific subject areas, including chemistry, physics, and biology, with a variety of causes and impacts in the past, present, and future. With the adoption of the Next Generation Science Standards, which emphasize climate change and other human impacts on natural systems, there has never been a better time to provide instructional support to educators on these topics. In response to this clear need, the University of California Museum of Paleontology, in collaboration with the National Center for Science Education, developed a new web resource for teachers and students titled "Understanding Global Change" (UGC) that introduces the drivers and impacts of global change. This website clarifies the connections among deep time, modern Earth system processes, and anthropogenic influences, and provides K-16 instructors with a wide range of easy-to-use tools, strategies, and lesson plans for communicating these important concepts regarding global change and the basic Earth systems processes. In summer 2014, the UGC website was field-tested during a workshop with 25 K-12 teachers and science educators. Feedback from participants helped the UGC team develop and identify pedagogically sound lesson plans and instructional tools on global change. These resources are accessible through UGC's searchable database, are aligned with NGSS and Common Core, and are categorized by grade level, subject, and level of inquiry-based instruction (confirmation, structured, guided, open). Providing a range of content and tools at levels appropriate for teachers is essential because our initial needs assessment found that educators often feel that they lack the content knowledge and expertise to address complex, but relevant global change issues, such as ocean acidification and deforestation. Ongoing needs assessments and surveys of teacher confidence when teaching global change content will continue to drive UGC resource development as the site expands in the future.

Towards a Global Operational Altimeter Service: RADS

NASA Astrophysics Data System (ADS)

Naeije, M.; Schrama, E.; Mathers, L.; Scharroo, R.

2001-12-01

DEOS' anticipation of the need for global altimeter services started the Radar Altimeter Database System (RADS) project. Embedded in the Netherlands Earth Observation NETwork (NEONET), this project is supported by the Dutch government. After defining the database content, collecting altimeter and ancillary data from all available altimeter missions and combining them with the latest (correction) models, we have arrived at an (inter)nationally appreciated validated, calibrated and consistent altimeter data set, comprising over 15 years of valuable sea level, wave height and wind data. Whenever new data or knowledge arrives the database is updated. Major assets of RADS are the upgraded ERS orbits and the flexible data organization. This paper presents an overview of the work involved in establishing RADS: the I/O, enhancements, screening, formatting, harmonization, and CAL/VAL. The aim is to improve the algorithms for converting satellite data to the final geophysical products. Global altimeter data from various satellites are inter-compared or compared to external data, like tide gauges, wind speed measurements, etc. This has been used to establish the data's quality and to enhance algorithms for deriving the geophysical parameters. Also: ironing out inconsistencies in significant wave height, sea state, inverse barometer, wet troposphere corrections, orbits, biases, drifts, and time tagging. Access to the database at level~1 level is provided for by a web portal (\\tt http://www.deos.tudelft.nl/altim/rads). Here also status, higher level products, software, and literature can be obtained. Finally, examples are given of putting in RADS in research and education. We fully automated the Gulf Stream and El Niño web pages: Hovmuller diagrams and eddy kinetic energy plots are refreshed regularly. Furthermore, RADS has been successfully used at Delft Hydraulics in a data assimilation scheme for improving tides and storm surge predictions, showing the importance of near real-time observations, and at the Dutch Meteorological Office KNMI for ENSO studies.

The epidemiology of acne vulgaris in late adolescence.

PubMed

Lynn, Darren D; Umari, Tamara; Dunnick, Cory A; Dellavalle, Robert P

2016-01-01

Acne vulgaris is the most common skin condition affecting late adolescents across the globe. Although prior studies have evaluated epidemiologic patterns of acne vulgaris in various ethnicities and regions, adequate understanding of the worldwide burden of the disease associated with patients in their late adolescence (15-19-year olds) remains lacking. To assess the global burden of the disease associated with acne vulgaris for late adolescents (15-19-year olds) and provide an overview of the epidemiology, pathophysiology, and treatment options for acne in this population. Database summary study. Global Burden of Disease Study 2010 database. Global Burden of Disease regions comprised countries with prevalence of acne vulgaris between the ages of 15 and 19 years. Geographic region-level disability-adjusted life year rates (per 100,000 persons) associated with acne vulgaris in years 1990 through 2010. Median percentage change in disability-adjusted life year rates was estimated for each region across the specified study period. Acne vulgaris-associated disease burden exhibits global distribution and has continued to grow in prevalence over time within this population. This continued growth suggests an unmet dermatologic need worldwide for this disorder and potential opportunities for improved access and delivery of dermatologic care. Our analysis of the literature reveals numerous opportunities for enhanced patient care. To that end, we highlight some of the effective and promising treatments currently available and address important factors, such as sex, nationality, genetics, pathophysiology, and diet, as they relate to acne vulgaris in late adolescence.

RiceAtlas, a spatial database of global rice calendars and production.

PubMed

Laborte, Alice G; Gutierrez, Mary Anne; Balanza, Jane Girly; Saito, Kazuki; Zwart, Sander J; Boschetti, Mirco; Murty, M V R; Villano, Lorena; Aunario, Jorrel Khalil; Reinke, Russell; Koo, Jawoo; Hijmans, Robert J; Nelson, Andrew

2017-05-30

Knowing where, when, and how much rice is planted and harvested is crucial information for understanding the effects of policy, trade, and global and technological change on food security. We developed RiceAtlas, a spatial database on the seasonal distribution of the world's rice production. It consists of data on rice planting and harvesting dates by growing season and estimates of monthly production for all rice-producing countries. Sources used for planting and harvesting dates include global and regional databases, national publications, online reports, and expert knowledge. Monthly production data were estimated based on annual or seasonal production statistics, and planting and harvesting dates. RiceAtlas has 2,725 spatial units. Compared with available global crop calendars, RiceAtlas is nearly ten times more spatially detailed and has nearly seven times more spatial units, with at least two seasons of calendar data, making RiceAtlas the most comprehensive and detailed spatial database on rice calendar and production.

Advances in Satellite Microwave Precipitation Retrieval Algorithms Over Land

NASA Astrophysics Data System (ADS)

Wang, N. Y.; You, Y.; Ferraro, R. R.

2015-12-01

Precipitation plays a key role in the earth's climate system, particularly in the aspect of its water and energy balance. Satellite microwave (MW) observations of precipitation provide a viable mean to achieve global measurement of precipitation with sufficient sampling density and accuracy. However, accurate precipitation information over land from satellite MW is a challenging problem. The Goddard Profiling Algorithm (GPROF) algorithm for the Global Precipitation Measurement (GPM) is built around the Bayesian formulation (Evans et al., 1995; Kummerow et al., 1996). GPROF uses the likelihood function and the prior probability distribution function to calculate the expected value of precipitation rate, given the observed brightness temperatures. It is particularly convenient to draw samples from a prior PDF from a predefined database of observations or models. GPROF algorithm does not search all database entries but only the subset thought to correspond to the actual observation. The GPM GPROF V1 database focuses on stratification by surface emissivity class, land surface temperature and total precipitable water. However, there is much uncertainty as to what is the optimal information needed to subset the database for different conditions. To this end, we conduct a database stratification study of using National Mosaic and Multi-Sensor Quantitative Precipitation Estimation, Special Sensor Microwave Imager/Sounder (SSMIS) and Advanced Technology Microwave Sounder (ATMS) and reanalysis data from Modern-Era Retrospective Analysis for Research and Applications (MERRA). Our database study (You et al., 2015) shows that environmental factors such as surface elevation, relative humidity, and storm vertical structure and height, and ice thickness can help in stratifying a single large database to smaller and more homogeneous subsets, in which the surface condition and precipitation vertical profiles are similar. It is found that the probability of detection (POD) increases about 8% and 12% by using stratified databases for rainfall and snowfall detection, respectively. In addition, by considering the relative humidity at lower troposphere and the vertical velocity at 700 hPa in the precipitation detection process, the POD for snowfall detection is further increased by 20.4% from 56.0% to 76.4%.

In Situ Global Sea Surface Salinity and Variability from the NCEI Global Thermosalinograph Database

NASA Astrophysics Data System (ADS)

Wang, Z.; Boyer, T.; Zhang, H. M.

2017-12-01

Sea surface salinity (SSS) plays an important role in the global ocean circulations. The variations of sea surface salinity are key indicators of changes in air-sea water fluxes. Using nearly 30 years of in situ measurements of sea surface salinity from thermosalinographs, we will evaluate the variations of the sea surface salinity in the global ocean. The sea surface salinity data used are from our newly-developed NCEI Global Thermosalinograph Database - NCEI-TSG. This database provides a comprehensive set of quality-controlled in-situ sea-surface salinity and temperature measurements collected from over 340 vessels during the period 1989 to the present. The NCEI-TSG is the world's most complete TSG dataset, containing all data from the different TSG data assembly centers, e.g. COAPS (SAMOS), IODE (GOSUD) and AOML, with more historical data from NCEI's archive to be added. Using this unique dataset, we will investigate the spatial variations of the global SSS and its variability. Annual and interannual variability will also be studied at selected regions.

Investigating International Time Trends in the Incidence and Prevalence of Atopic Eczema 1990–2010: A Systematic Review of Epidemiological Studies

PubMed Central

Deckers, Ivette A. G.; McLean, Susannah; Linssen, Sanne; Mommers, Monique; van Schayck, C. P.; Sheikh, Aziz

2012-01-01

The prevalence of atopic eczema has been found to have increased greatly in some parts of the world. Building on a systematic review of global disease trends in asthma, our objective was to study trends in incidence and prevalence of atopic eczema. Disease trends are important for health service planning and for generating hypotheses regarding the aetiology of chronic disorders. We conducted a systematic search for high quality reports of cohort, repeated cross-sectional and routine healthcare database-based studies in seven electronic databases. Studies were required to report on at least two measures of the incidence and/or prevalence of atopic eczema between 1990 and 2010 and needed to use comparable methods at all assessment points. We retrieved 2,464 citations, from which we included 69 reports. Assessing global trends was complicated by the use of a range of outcome measures across studies and possible changes in diagnostic criteria over time. Notwithstanding these difficulties, there was evidence suggesting that the prevalence of atopic eczema was increasing in Africa, eastern Asia, western Europe and parts of northern Europe (i.e. the UK). No clear trends were identified in other regions. There was inadequate study coverage worldwide, particularly for repeated measures of atopic eczema incidence. Further epidemiological work is needed to investigate trends in what is now one of the most common long-term disorders globally. A range of relevant measures of incidence and prevalence, careful use of definitions and description of diagnostic criteria, improved study design, more comprehensive reporting and appropriate interpretation of these data are all essential to ensure that this important field of epidemiological enquiry progresses in a scientifically robust manner. PMID:22808063

Characterisation of the Permafrost Carbon Pool

USGS Publications Warehouse

Kuhry, P.; Grosse, G.; Harden, J.W.; Hugelius, G.; Koven, C.D.; Ping, C.-L.; Schirrmeister, L.; Tarnocai, C.

2013-01-01

The current estimate of the soil organic carbon (SOC) pool in the northern permafrost region of 1672 Petagrams (Pg) C is much larger than previously reported and needs to be incorporated in global soil carbon (C) inventories. The Northern Circumpolar Soil Carbon Database (NCSCD), extended to include the range 0–300 cm, is now available online for wider use by the scientific community. An important future aim is to provide quantitative uncertainty ranges for C pool estimates. Recent studies have greatly improved understanding of the regional patterns, landscape distribution and vertical (soil horizon) partitioning of the permafrost C pool in the upper 3 m of soils. However, the deeper C pools in unconsolidated Quaternary deposits need to be better constrained. A general lability classification of the permafrost C pool should be developed to address potential C release upon thaw. The permafrost C pool and its dynamics are beginning to be incorporated into Earth System models, although key periglacial processes such as thermokarst still need to be properly represented to obtain a better quantification of the full permafrost C feedback on global climate change.

Toward an open-access global database for mapping, control, and surveillance of neglected tropical diseases.

PubMed

Hürlimann, Eveline; Schur, Nadine; Boutsika, Konstantina; Stensgaard, Anna-Sofie; Laserna de Himpsl, Maiti; Ziegelbauer, Kathrin; Laizer, Nassor; Camenzind, Lukas; Di Pasquale, Aurelio; Ekpo, Uwem F; Simoonga, Christopher; Mushinge, Gabriel; Saarnak, Christopher F L; Utzinger, Jürg; Kristensen, Thomas K; Vounatsou, Penelope

2011-12-01

After many years of general neglect, interest has grown and efforts came under way for the mapping, control, surveillance, and eventual elimination of neglected tropical diseases (NTDs). Disease risk estimates are a key feature to target control interventions, and serve as a benchmark for monitoring and evaluation. What is currently missing is a georeferenced global database for NTDs providing open-access to the available survey data that is constantly updated and can be utilized by researchers and disease control managers to support other relevant stakeholders. We describe the steps taken toward the development of such a database that can be employed for spatial disease risk modeling and control of NTDs. With an emphasis on schistosomiasis in Africa, we systematically searched the literature (peer-reviewed journals and 'grey literature'), contacted Ministries of Health and research institutions in schistosomiasis-endemic countries for location-specific prevalence data and survey details (e.g., study population, year of survey and diagnostic techniques). The data were extracted, georeferenced, and stored in a MySQL database with a web interface allowing free database access and data management. At the beginning of 2011, our database contained more than 12,000 georeferenced schistosomiasis survey locations from 35 African countries available under http://www.gntd.org. Currently, the database is expanded to a global repository, including a host of other NTDs, e.g. soil-transmitted helminthiasis and leishmaniasis. An open-access, spatially explicit NTD database offers unique opportunities for disease risk modeling, targeting control interventions, disease monitoring, and surveillance. Moreover, it allows for detailed geostatistical analyses of disease distribution in space and time. With an initial focus on schistosomiasis in Africa, we demonstrate the proof-of-concept that the establishment and running of a global NTD database is feasible and should be expanded without delay.

User’s guide and metada for the PICES Nonindigenous Species Information System

USGS Publications Warehouse

Lee,; Reusser, Deborah A.; Marko,; Ranelletti,

2012-01-01

The overall goal of both the database and Atlas was to simplify and standardize the dissemination of distributional, habitat, and life history characteristics of near-coastal and estuarine nonindigenous species. This database provides a means of querying these data and displaying the information in a consistent format. The specific classes of information the database captures include: Regional and global ranges of native and nonindigenous near-coastal and estuarine species at different hierarchical spatial scales. Habitat and physiological requirements of near-coastal and estuarine species. Life history characteristics of near-coastal and estuarine species. Invasion history and vectors for nonindigenous species. This standardized and synthesized data in the database and the Atlas provide the basic information needed to address a number of managerial and scientific needs. Thus, users will be able to: Create a baseline on the extent of invasion by region in order to assess new invasions. Use existing geographical patterns of invasion to gain some insights into potential new invaders. Use existing geographical patters of invasion to gain some insights into mechanisms affecting relative invasibility of different areas. Use life history attributes and environmental requirements of the reported nonindigenous species to evaluate traits of invaders. Understand the potential spread of invaders based on their habitat and environmental requirements. Understand importance of different vectors of introduction of nonindigenous species by region. The data in the Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific (Lee and Reusser, 2012) are up-to-date as of June 2012. Updates to the PICES database were made in September 2012. 

Global search tool for the Advanced Photon Source Integrated Relational Model of Installed Systems (IRMIS) database.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quock, D. E. R.; Cianciarulo, M. B.; APS Engineering Support Division

2007-01-01

The Integrated Relational Model of Installed Systems (IRMIS) is a relational database tool that has been implemented at the Advanced Photon Source to maintain an updated account of approximately 600 control system software applications, 400,000 process variables, and 30,000 control system hardware components. To effectively display this large amount of control system information to operators and engineers, IRMIS was initially built with nine Web-based viewers: Applications Organizing Index, IOC, PLC, Component Type, Installed Components, Network, Controls Spares, Process Variables, and Cables. However, since each viewer is designed to provide details from only one major category of the control system, themore » necessity for a one-stop global search tool for the entire database became apparent. The user requirements for extremely fast database search time and ease of navigation through search results led to the choice of Asynchronous JavaScript and XML (AJAX) technology in the implementation of the IRMIS global search tool. Unique features of the global search tool include a two-tier level of displayed search results, and a database data integrity validation and reporting mechanism.« less

Mobile object retrieval in server-based image databases

NASA Astrophysics Data System (ADS)

Manger, D.; Pagel, F.; Widak, H.

2013-05-01

The increasing number of mobile phones equipped with powerful cameras leads to huge collections of user-generated images. To utilize the information of the images on site, image retrieval systems are becoming more and more popular to search for similar objects in an own image database. As the computational performance and the memory capacity of mobile devices are constantly increasing, this search can often be performed on the device itself. This is feasible, for example, if the images are represented with global image features or if the search is done using EXIF or textual metadata. However, for larger image databases, if multiple users are meant to contribute to a growing image database or if powerful content-based image retrieval methods with local features are required, a server-based image retrieval backend is needed. In this work, we present a content-based image retrieval system with a client server architecture working with local features. On the server side, the scalability to large image databases is addressed with the popular bag-of-word model with state-of-the-art extensions. The client end of the system focuses on a lightweight user interface presenting the most similar images of the database highlighting the visual information which is common with the query image. Additionally, new images can be added to the database making it a powerful and interactive tool for mobile contentbased image retrieval.

Global health and transfusion medicine: education and training in developing countries.

PubMed

Eichbaum, Quentin; Shan, Hua; Goncalez, Thelma T; Duits, A J; Knox, Patricia; Reilly, Jim; Andrews, David

2014-07-01

Education and training in transfusion medicine have improved over the past decade in developing countries but are still generally deficient for the purpose of maintaining the safety of the global blood supply. In 2009, the World Health Organization global database on blood safety indicated that only 72% of countries in the world were able to meet their training needs necessary for maintaining the safety of their local blood supply. Educational approaches in transfusion medicine vary widely between continents and world regions. In this article, we summarize a session on global health education and training in developing countries that took place at the 2012 AABB conference. The panel consisted of transfusion representatives from South America (Brazil), Asia (China), Africa (South Africa), and the Caribbean (Curaçao), as well as a description of capacitation issues in postearthquake Haiti and the pivotal role of the US President's Emergency Plan for AIDS Relief (PEPFAR) in transfusion training and education in Africa. We present here summaries of each of these panel presentations. © 2014 AABB.

Global carbon dioxide emissions from inland waters

USGS Publications Warehouse

Raymond, Peter A.; Hartmann, Jens; Lauerwald, Ronny; Sobek, Sebastian; McDonald, Cory P.; Hoover, Mark; Butman, David; Striegl, Robert G.; Mayorga, Emilio; Humborg, Christoph; Kortelainen, Pirkko; Durr, Hans H.; Meybeck, Michel; Ciais, Philippe; Guth, Peter

2013-01-01

Carbon dioxide (CO2) transfer from inland waters to the atmosphere, known as CO2 evasion, is a component of the global carbon cycle. Global estimates of CO2 evasion have been hampered, however, by the lack of a framework for estimating the inland water surface area and gas transfer velocity and by the absence of a global CO2 database. Here we report regional variations in global inland water surface area, dissolved CO2 and gas transfer velocity. We obtain global CO2 evasion rates of 1.8   petagrams of carbon (Pg C) per year from streams and rivers and 0.32  Pg C yr−1 from lakes and reservoirs, where the upper and lower limits are respectively the 5th and 95th confidence interval percentiles. The resulting global evasion rate of 2.1 Pg C yr−1 is higher than previous estimates owing to a larger stream and river evasion rate. Our analysis predicts global hotspots in stream and river evasion, with about 70 per cent of the flux occurring over just 20 per cent of the land surface. The source of inland water CO2 is still not known with certainty and new studies are needed to research the mechanisms controlling CO2 evasion globally.

Hydrologic Derivatives for Modeling and Analysis—A new global high-resolution database

USGS Publications Warehouse

Verdin, Kristine L.

2017-07-17

The U.S. Geological Survey has developed a new global high-resolution hydrologic derivative database. Loosely modeled on the HYDRO1k database, this new database, entitled Hydrologic Derivatives for Modeling and Analysis, provides comprehensive and consistent global coverage of topographically derived raster layers (digital elevation model data, flow direction, flow accumulation, slope, and compound topographic index) and vector layers (streams and catchment boundaries). The coverage of the data is global, and the underlying digital elevation model is a hybrid of three datasets: HydroSHEDS (Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales), GMTED2010 (Global Multi-resolution Terrain Elevation Data 2010), and the SRTM (Shuttle Radar Topography Mission). For most of the globe south of 60°N., the raster resolution of the data is 3 arc-seconds, corresponding to the resolution of the SRTM. For the areas north of 60°N., the resolution is 7.5 arc-seconds (the highest resolution of the GMTED2010 dataset) except for Greenland, where the resolution is 30 arc-seconds. The streams and catchments are attributed with Pfafstetter codes, based on a hierarchical numbering system, that carry important topological information. This database is appropriate for use in continental-scale modeling efforts. The work described in this report was conducted by the U.S. Geological Survey in cooperation with the National Aeronautics and Space Administration Goddard Space Flight Center.

Global Distribution of Outbreaks of Water-Associated Infectious Diseases

PubMed Central

Yang, Kun; LeJeune, Jeffrey; Alsdorf, Doug; Lu, Bo; Shum, C. K.; Liang, Song

2012-01-01

Background Water plays an important role in the transmission of many infectious diseases, which pose a great burden on global public health. However, the global distribution of these water-associated infectious diseases and underlying factors remain largely unexplored. Methods and Findings Based on the Global Infectious Disease and Epidemiology Network (GIDEON), a global database including water-associated pathogens and diseases was developed. In this study, reported outbreak events associated with corresponding water-associated infectious diseases from 1991 to 2008 were extracted from the database. The location of each reported outbreak event was identified and geocoded into a GIS database. Also collected in the GIS database included geo-referenced socio-environmental information including population density (2000), annual accumulated temperature, surface water area, and average annual precipitation. Poisson models with Bayesian inference were developed to explore the association between these socio-environmental factors and distribution of the reported outbreak events. Based on model predictions a global relative risk map was generated. A total of 1,428 reported outbreak events were retrieved from the database. The analysis suggested that outbreaks of water-associated diseases are significantly correlated with socio-environmental factors. Population density is a significant risk factor for all categories of reported outbreaks of water-associated diseases; water-related diseases (e.g., vector-borne diseases) are associated with accumulated temperature; water-washed diseases (e.g., conjunctivitis) are inversely related to surface water area; both water-borne and water-related diseases are inversely related to average annual rainfall. Based on the model predictions, “hotspots” of risks for all categories of water-associated diseases were explored. Conclusions At the global scale, water-associated infectious diseases are significantly correlated with socio-environmental factors, impacting all regions which are affected disproportionately by different categories of water-associated infectious diseases. PMID:22348158

Assessment of Graph Databases as a Viable Materiel Solution for the Army’s Dynamic Force Structure (DFS) Portal Implementation

DTIC Science & Technology

2018-03-30

information : Francisco L. Loaiza-Lemos, Project Leader floaiza@ida.org, 703-845-687 Margaret E. Myers, Director, Information Technology and Systems...analysis is aligned with the goals and objectives of the Department of Defense (DoD) as expressed in its Global Force Management Data Initiative...the previous phases of the analysis and how can they help inform the decision process for determining the optimal mix needed to implement the planned

Airborne Network Data Availability Using Peer to Peer Database Replication on a Distributed Hash Table

DTIC Science & Technology

2013-03-01

DSR Dynamic Source Routing DSSS Direct -sequence spread spectrum GUID Globally Unique ID MANET Mobile Ad-hoc Network NS3 Network Simulator 3 OLSR...networking schemes for safe maneuvering and data communication. Imagine needing to maintain an operational picture of an overall environment using a...as simple as O(n) where every node is sequentially queried to O log(n), or O(1). These schemes will be discussed with each individual DHT. Four of the

Advancing Genomics through the Global Invertebrate Genomics Alliance (GIGA)

PubMed Central

Voolstra, Christian R.; Wörheide, Gert; Lopez, Jose V.

2017-01-01

The Global Invertebrate Genomics Alliance (GIGA), a collaborative network of diverse scientists, marked its second anniversary with a workshop in Munich, Germany, where international attendees focused on discussing current progress, milestones and bioinformatics resources. The community determined the recruitment and training talented researchers as one of the most pressing future needs and identified opportunities for network funding. GIGA also promotes future research efforts to prioritize taxonomic diversity and create new synergies. Here, we announce the generation of a central and simple data repository portal with a wide coverage of available sequence data, via the compagen platform, in parallel with more focused and specialized organism databases to globally advance invertebrate genomics. Therefore this article serves the objectives of GIGA by disseminating current progress and future prospects in the science of invertebrate genomics with the aim of promotion and facilitation of interdisciplinary and international research. PMID:28603454

Advancing Genomics through the Global Invertebrate Genomics Alliance (GIGA).

PubMed

Voolstra, Christian R; Wörheide, Gert; Lopez, Jose V

2017-03-01

The Global Invertebrate Genomics Alliance (GIGA), a collaborative network of diverse scientists, marked its second anniversary with a workshop in Munich, Germany, where international attendees focused on discussing current progress, milestones and bioinformatics resources. The community determined the recruitment and training talented researchers as one of the most pressing future needs and identified opportunities for network funding. GIGA also promotes future research efforts to prioritize taxonomic diversity and create new synergies. Here, we announce the generation of a central and simple data repository portal with a wide coverage of available sequence data, via the compagen platform, in parallel with more focused and specialized organism databases to globally advance invertebrate genomics. Therefore this article serves the objectives of GIGA by disseminating current progress and future prospects in the science of invertebrate genomics with the aim of promotion and facilitation of interdisciplinary and international research.

Health Policy Brief: Global Mental Health and the United Nations' Sustainable Development Goals.

PubMed

Cratsley, Kelso; Mackey, Tim K

2018-01-25

Increased awareness of the importance of mental health for global health has led to a number of new initiatives, including influential policy instruments issued by the World Health Organization (WHO) and the United Nations (UN). This policy brief describes two WHO instruments, the Mental Health Action Plan for 2013-2020 (World Health Organization, 2013) and the Mental Health Atlas (World Health Organization, 2015), and presents a comparative analysis with the Sustainable Development Goals (SDGs) of the UN's 2030 Agenda for Sustainable Development (United Nations, 2015). The WHO's Action Plan calls for several specific objectives and targets, with a focus on improving global mental health governance and service coverage. In contrast, the UN's Sustainable Development Goals include only one goal specific to mental health, with a single indicator tracking suicide mortality rates. The discrepancy between the WHO and UN frameworks suggests a need for increased policy coherence. Improved global health governance can provide the basis for ensuring and accelerating progress in global mental health. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

USER'S GUIDE FOR GLOED VERSION 1.0 - THE GLOBAL EMISSIONS DATABASE

EPA Science Inventory

The document is a user's guide for the EPA-developed, powerful software package, Global Emissions Database (GloED). GloED is a user-friendly, menu-driven tool for storing and retrieving emissions factors and activity data on a country-specific basis. Data can be selected from dat...

Commercial Aircraft Emission Scenario for 2020: Database Development and Analysis

NASA Technical Reports Server (NTRS)

Sutkus, Donald J., Jr.; Baughcum, Steven L.; DuBois, Douglas P.; Wey, Chowen C. (Technical Monitor)

2003-01-01

This report describes the development of a three-dimensional database of aircraft fuel use and emissions (NO(x), CO, and hydrocarbons) for the commercial aircraft fleet projected to 2020. Global totals of emissions and fuel burn for 2020 are compared to global totals from previous aircraft emission scenario calculations.

CLAST: CUDA implemented large-scale alignment search tool.

PubMed

Yano, Masahiro; Mori, Hiroshi; Akiyama, Yutaka; Yamada, Takuji; Kurokawa, Ken

2014-12-11

Metagenomics is a powerful methodology to study microbial communities, but it is highly dependent on nucleotide sequence similarity searching against sequence databases. Metagenomic analyses with next-generation sequencing technologies produce enormous numbers of reads from microbial communities, and many reads are derived from microbes whose genomes have not yet been sequenced, limiting the usefulness of existing sequence similarity search tools. Therefore, there is a clear need for a sequence similarity search tool that can rapidly detect weak similarity in large datasets. We developed a tool, which we named CLAST (CUDA implemented large-scale alignment search tool), that enables analyses of millions of reads and thousands of reference genome sequences, and runs on NVIDIA Fermi architecture graphics processing units. CLAST has four main advantages over existing alignment tools. First, CLAST was capable of identifying sequence similarities ~80.8 times faster than BLAST and 9.6 times faster than BLAT. Second, CLAST executes global alignment as the default (local alignment is also an option), enabling CLAST to assign reads to taxonomic and functional groups based on evolutionarily distant nucleotide sequences with high accuracy. Third, CLAST does not need a preprocessed sequence database like Burrows-Wheeler Transform-based tools, and this enables CLAST to incorporate large, frequently updated sequence databases. Fourth, CLAST requires <2 GB of main memory, making it possible to run CLAST on a standard desktop computer or server node. CLAST achieved very high speed (similar to the Burrows-Wheeler Transform-based Bowtie 2 for long reads) and sensitivity (equal to BLAST, BLAT, and FR-HIT) without the need for extensive database preprocessing or a specialized computing platform. Our results demonstrate that CLAST has the potential to be one of the most powerful and realistic approaches to analyze the massive amount of sequence data from next-generation sequencing technologies.

A framework for global river flood risk assessments

NASA Astrophysics Data System (ADS)

Winsemius, H. C.; Van Beek, L. P. H.; Jongman, B.; Ward, P. J.; Bouwman, A.

2013-05-01

There is an increasing need for strategic global assessments of flood risks in current and future conditions. In this paper, we propose a framework for global flood risk assessment for river floods, which can be applied in current conditions, as well as in future conditions due to climate and socio-economic changes. The framework's goal is to establish flood hazard and impact estimates at a high enough resolution to allow for their combination into a risk estimate, which can be used for strategic global flood risk assessments. The framework estimates hazard at a resolution of ~ 1 km2 using global forcing datasets of the current (or in scenario mode, future) climate, a global hydrological model, a global flood-routing model, and more importantly, an inundation downscaling routine. The second component of the framework combines hazard with flood impact models at the same resolution (e.g. damage, affected GDP, and affected population) to establish indicators for flood risk (e.g. annual expected damage, affected GDP, and affected population). The framework has been applied using the global hydrological model PCR-GLOBWB, which includes an optional global flood routing model DynRout, combined with scenarios from the Integrated Model to Assess the Global Environment (IMAGE). We performed downscaling of the hazard probability distributions to 1 km2 resolution with a new downscaling algorithm, applied on Bangladesh as a first case study application area. We demonstrate the risk assessment approach in Bangladesh based on GDP per capita data, population, and land use maps for 2010 and 2050. Validation of the hazard estimates has been performed using the Dartmouth Flood Observatory database. This was done by comparing a high return period flood with the maximum observed extent, as well as by comparing a time series of a single event with Dartmouth imagery of the event. Validation of modelled damage estimates was performed using observed damage estimates from the EM-DAT database and World Bank sources. We discuss and show sensitivities of the estimated risks with regard to the use of different climate input sets, decisions made in the downscaling algorithm, and different approaches to establish impact models.

The IAEA stopping power database, following the trends in stopping power of ions in matter

NASA Astrophysics Data System (ADS)

Montanari, C. C.; Dimitriou, P.

2017-10-01

The aim of this work is to present an overview of the state of art of the energy loss of ions in matter, based on the new developments in the stopping power database of the International Atomic Energy Agency (IAEA). This exhaustive collection of experimental data, graphs, programs and comparisons, is the legacy of Helmut Paul, who made it accessible to the global scientific community, and has been extensively employed in theoretical and experimental research during the last 25 years. The field of stopping power in matter is evolving, with new trends in materials of interest, including oxides, nitrides, polymers, and biological targets. Our goal is to identify areas of interest and emerging data needs to meet the requirements of a continuously developing user community.

ERAIZDA: a model for holistic annotation of animal infectious and zoonotic diseases

PubMed Central

Buza, Teresia M.; Jack, Sherman W.; Kirunda, Halid; Khaitsa, Margaret L.; Lawrence, Mark L.; Pruett, Stephen; Peterson, Daniel G.

2015-01-01

There is an urgent need for a unified resource that integrates trans-disciplinary annotations of emerging and reemerging animal infectious and zoonotic diseases. Such data integration will provide wonderful opportunity for epidemiologists, researchers and health policy makers to make data-driven decisions designed to improve animal health. Integrating emerging and reemerging animal infectious and zoonotic disease data from a large variety of sources into a unified open-access resource provides more plausible arguments to achieve better understanding of infectious and zoonotic diseases. We have developed a model for interlinking annotations of these diseases. These diseases are of particular interest because of the threats they pose to animal health, human health and global health security. We demonstrated the application of this model using brucellosis, an infectious and zoonotic disease. Preliminary annotations were deposited into VetBioBase database (http://vetbiobase.igbb.msstate.edu). This database is associated with user-friendly tools to facilitate searching, retrieving and downloading of disease-related information. Database URL: http://vetbiobase.igbb.msstate.edu PMID:26581408

Smartphone home monitoring of ECG

NASA Astrophysics Data System (ADS)

Szu, Harold; Hsu, Charles; Moon, Gyu; Landa, Joseph; Nakajima, Hiroshi; Hata, Yutaka

2012-06-01

A system of ambulatory, halter, electrocardiography (ECG) monitoring system has already been commercially available for recording and transmitting heartbeats data by the Internet. However, it enjoys the confidence with a reservation and thus a limited market penetration, our system was targeting at aging global villagers having an increasingly biomedical wellness (BMW) homecare needs, not hospital related BMI (biomedical illness). It was designed within SWaP-C (Size, Weight, and Power, Cost) using 3 innovative modules: (i) Smart Electrode (lowpower mixed signal embedded with modern compressive sensing and nanotechnology to improve the electrodes' contact impedance); (ii) Learnable Database (in terms of adaptive wavelets transform QRST feature extraction, Sequential Query Relational database allowing home care monitoring retrievable Aided Target Recognition); (iii) Smartphone (touch screen interface, powerful computation capability, caretaker reporting with GPI, ID, and patient panic button for programmable emergence procedure). It can provide a supplementary home screening system for the post or the pre-diagnosis care at home with a build-in database searchable with the time, the place, and the degree of urgency happened, using in-situ screening.

A Global Digital Database and Atlas of Quaternary Dune Fields and Sand Seas

NASA Astrophysics Data System (ADS)

Lancaster, N.; Halfen, A. F.

2012-12-01

Sand seas and dune fields are globally significant sedimentary deposits, which archive the effects of climate and sea level change on a variety of temporal and spatial scales. Dune systems provide a valuable source of information on past climate conditions, including evidence for periods of aridity and unique data on past wind regimes. Researchers have compiled vast quantities of geomorphic and chronological data from these dune systems for nearly half a century, however, these data remain disconnected, making comparisons of dune systems challenging at global and regional scales. The primary goal of this project is to develop a global digital database of chronologic information for periods of desert sand dune accumulation and stabilization, as well as, pertinent stratigraphic and geomorphic information. This database can then be used by scientists to 1) document the history of aeolian processes in arid regions with emphasis on dune systems in low and mid latitude deserts, 2) correlate periods of sand accumulation and stability with other terrestrial and marine paleoclimatic proxies and records, and 3) develop an improved understanding of the response of dune systems to climate change. The database currently resides in Microsoft Access format, which allows searching and filtering of data. The database includes 4 linked tables containing information on the site, chronological control (radiocarbon or luminescence), and the pertinent literature citations. Thus far the database contains information for 838 sites world wide, comprising 2598 luminescence and radiocarbon ages, though these numbers increase regularly as new data is added. The database is only available on request at this time, however, an online, GIS database is being developed and will be available in the near future. Data outputs from the online database will include PDF reports and Google Earth formatted data sets for quick viewing of data. Additionally, data will be available in a gridded format for wider use in data-model comparisons. Sites in database August 2012

Ethical management in the constitution of a European database for leukodystrophies rare diseases.

PubMed

Duchange, Nathalie; Darquy, Sylviane; d'Audiffret, Diane; Callies, Ingrid; Lapointe, Anne-Sophie; Loeve, Boris; Boespflug-Tanguy, Odile; Moutel, Grégoire

2014-09-01

The EU LeukoTreat program aims to connect, enlarge and improve existing national databases for leukodystrophies (LDs) and other genetic diseases affecting the white matter of the brain. Ethical issues have been placed high on the agenda by pairing the participating LD expert research teams with experts in medical ethics and LD patient families and associations. The overarching goal is to apply core ethics principles to specific project needs and ensure patient rights and protection in research addressing the context of these rare diseases. This paper looks at how ethical issues were identified and handled at project management level when setting up an ethics committee. Through a work performed as a co-construction between health professionals, ethics experts, and patient representatives, we expose the major ethical issues identified. The committee acts as the forum for tackling specific issues tied to data sharing and patient participation: the thin line between care and research, the need for a charter establishing the commitments binding health professionals and the information items to be delivered. Ongoing feedback on the database, including delivering global results in a broad-audience format, emerged as a key recommendation. Information should be available to all patients in the partner countries developing the database and should be scaled to different patient profiles. This work led to a number of recommendations for ensuring transparency and optimizing the partnership between scientists and patients. Copyright © 2014 European Paediatric Neurology Society. Published by Elsevier Ltd. All rights reserved.

Integrating heterogeneous databases in clustered medic care environments using object-oriented technology

NASA Astrophysics Data System (ADS)

Thakore, Arun K.; Sauer, Frank

1994-05-01

The organization of modern medical care environments into disease-related clusters, such as a cancer center, a diabetes clinic, etc., has the side-effect of introducing multiple heterogeneous databases, often containing similar information, within the same organization. This heterogeneity fosters incompatibility and prevents the effective sharing of data amongst applications at different sites. Although integration of heterogeneous databases is now feasible, in the medical arena this is often an ad hoc process, not founded on proven database technology or formal methods. In this paper we illustrate the use of a high-level object- oriented semantic association method to model information found in different databases into an integrated conceptual global model that integrates the databases. We provide examples from the medical domain to illustrate an integration approach resulting in a consistent global view, without attacking the autonomy of the underlying databases.

Characterizing worldwide patterns of fluvial geomorphology and hydrology with the Global River Widths from Landsat (GRWL) database

NASA Astrophysics Data System (ADS)

Allen, G. H.; Pavelsky, T.

2015-12-01

The width of a river reflects complex interactions between river water hydraulics and other physical factors like bank erosional resistance, sediment supply, and human-made structures. A broad range of fluvial process studies use spatially distributed river width data to understand and quantify flood hazards, river water flux, or fluvial greenhouse gas efflux. Ongoing technological advances in remote sensing, computing power, and model sophistication are moving river system science towards global-scale studies that aim to understand the Earth's fluvial system as a whole. As such, a global spatially distributed database of river location and width is necessary to better constrain these studies. Here we present the Global River Width from Landsat (GRWL) Database, the first global-scale database of river planform at mean discharge. With a resolution of 30 m, GRWL consists of 58 million measurements of river centerline location, width, and braiding index. In total, GRWL measures 2.1 million km of rivers wider than 30 m, corresponding to 602 thousand km2 of river water surface area, a metric used to calculate global greenhouse gas emissions from rivers to the atmosphere. Using data from GRWL, we find that ~20% of the world's rivers are located above 60ºN where little high quality information exists about rivers of any kind. Further, we find that ~10% of the world's large rivers are multichannel, which may impact the development of the new generation of regional and global hydrodynamic models. We also investigate the spatial controls of global fluvial geomorphology and river hydrology by comparing climate, topography, geology, and human population density to GRWL measurements. The GRWL Database will be made publically available upon publication to facilitate improved understanding of Earth's fluvial system. Finally, GRWL will be used as an a priori data for the joint NASA/CNES Surface Water and Ocean Topography (SWOT) Satellite Mission, planned for launch in 2020.

Science priorities for seamounts: research links to conservation and management.

PubMed

Clark, Malcolm R; Schlacher, Thomas A; Rowden, Ashley A; Stocks, Karen I; Consalvey, Mireille

2012-01-01

Seamounts shape the topography of all ocean basins and can be hotspots of biological activity in the deep sea. The Census of Marine Life on Seamounts (CenSeam) was a field program that examined seamounts as part of the global Census of Marine Life (CoML) initiative from 2005 to 2010. CenSeam progressed seamount science by collating historical data, collecting new data, undertaking regional and global analyses of seamount biodiversity, mapping species and habitat distributions, challenging established paradigms of seamount ecology, developing new hypotheses, and documenting the impacts of human activities on seamounts. However, because of the large number of seamounts globally, much about the structure, function and connectivity of seamount ecosystems remains unexplored and unknown. Continual, and potentially increasing, threats to seamount resources from fishing and seabed mining are creating a pressing demand for research to inform conservation and management strategies. To meet this need, intensive science effort in the following areas will be needed: 1) Improved physical and biological data; of particular importance is information on seamount location, physical characteristics (e.g. habitat heterogeneity and complexity), more complete and intensive biodiversity inventories, and increased understanding of seamount connectivity and faunal dispersal; 2) New human impact data; these shall encompass better studies on the effects of human activities on seamount ecosystems, as well as monitoring long-term changes in seamount assemblages following impacts (e.g. recovery); 3) Global data repositories; there is a pressing need for more comprehensive fisheries catch and effort data, especially on the high seas, and compilation or maintenance of geological and biodiversity databases that underpin regional and global analyses; 4) Application of support tools in a data-poor environment; conservation and management will have to increasingly rely on predictive modelling techniques, critical evaluation of environmental surrogates as faunal "proxies", and ecological risk assessment.

Incidence and mortality of lung cancer: global trends and association with socioeconomic status.

PubMed

Wong, Martin C S; Lao, Xiang Qian; Ho, Kin-Fai; Goggins, William B; Tse, Shelly L A

2017-10-30

We examined the correlation between lung cancer incidence/mortality and country-specific socioeconomic development, and evaluated its most recent global trends. We retrieved its age-standardized incidence rates from the GLOBOCAN database, and temporal patterns were assessed from global databases. We employed simple linear regression analysis to evaluate their correlations with Human Development Index (HDI) and Gross Domestic Product (GDP) per capita. The average annual percent changes (AAPC) of the trends were evaluated from join-point regression analysis. Country-specific HDI was strongly correlated with age-standardized incidence (r = 0.70) and mortality (r = 0.67), and to a lesser extent GDP (r = 0.24 to 0.55). Among men, 22 and 30 (out of 38 and 36) countries showed declining incidence and mortality trends, respectively; whilst among women, 19 and 16 countries showed increasing incidence and mortality trends, respectively. Among men, the AAPCs ranged from -2.8 to -0.6 (incidence) and -3.6 to -1.1 (mortality) in countries with declining trend, whereas among women the AAPC range was 0.4 to 8.9 (incidence) and 1 to 4.4 (mortality) in countries with increasing trend. Among women, Brazil, Spain and Cyprus had the greatest incidence increase, and all countries in Western, Southern and Eastern Europe reported increasing mortality. These findings highlighted the need for targeted preventive measures.

Nutrition research to affect food and a healthy lifespan12

PubMed Central

Ohlhorst, Sarah D.; Russell, Robert; Bier, Dennis; Klurfeld, David M.; Li, Zhaoping; Mein, Jonathan R.; Milner, John; Ross, A. Catharine; Stover, Patrick; Konopka, Emily

2013-01-01

Proper nutrition offers one of the most effective and least costly ways to decrease the burden of many diseases and their associated risk factors, including obesity. Nutrition research holds the key to increasing our understanding of the causes of obesity and its related comorbidities and thus holds promise to markedly influence global health and economies. After outreach to 75 thought leaders, the American Society for Nutrition (ASN) convened a Working Group to identify the nutrition research needs whose advancement will have the greatest projected impact on the future health and well-being of global populations. ASN’s Nutrition Research Needs focus on the following high priority areas: 1) variability in individual responses to diet and foods; 2) healthy growth, development, and reproduction; 3) health maintenance; 4) medical management; 5) nutrition-related behaviors; and 6) food supply/environment. ASN hopes the Nutrition Research Needs will prompt collaboration among scientists across all disciplines to advance this challenging research agenda given the high potential for translation and impact on public health. Furthermore, ASN hopes the findings from the Nutrition Research Needs will stimulate the development and adoption of new and innovative strategies that can be applied toward the prevention and treatment of nutrition-related diseases. The multidisciplinary nature of nutrition research requires stakeholders with differing areas of expertise to collaborate on multifaceted approaches to establish the evidence-based nutrition guidance and policies that will lead to better health for the global population. In addition to the identified research needs, ASN also identified 5 tools that are critical to the advancement of the Nutrition Research Needs: 1) omics, 2) bioinformatics, 3) databases, 4) biomarkers, and 5) cost-effectiveness analysis. PMID:24038264

Toward a comprehensive information system to assist invasive species management in Hawaii and Pacific Islands

USGS Publications Warehouse

Fornwall, M.; Loope, L.

2004-01-01

The need for coordinated regional and global electronic databases to assist prevention, early detection, rapid response, and control of biological invasions is well accepted. The Pacific Basin Information Node (PBIN), a node of the National Biological Information Infrastructure, has been increasingly engaged in the invasive species enterprise since its establishment in 2001. Since this time, PBIN has sought to support frontline efforts at combating invasions, through working with stakeholders in conservation, agriculture, forestry, health, and commerce to support joint information needs. Although initial emphasis has been on Hawaii, cooperative work with other Pacific islands and countries of the Pacific Rim is already underway and planned.

The Eruption Forecasting Information System: Volcanic Eruption Forecasting Using Databases

NASA Astrophysics Data System (ADS)

Ogburn, S. E.; Harpel, C. J.; Pesicek, J. D.; Wellik, J.

2016-12-01

Forecasting eruptions, including the onset size, duration, location, and impacts, is vital for hazard assessment and risk mitigation. The Eruption Forecasting Information System (EFIS) project is a new initiative of the US Geological Survey-USAID Volcano Disaster Assistance Program (VDAP) and will advance VDAP's ability to forecast the outcome of volcanic unrest. The project supports probability estimation for eruption forecasting by creating databases useful for pattern recognition, identifying monitoring data thresholds beyond which eruptive probabilities increase, and for answering common forecasting questions. A major component of the project is a global relational database, which contains multiple modules designed to aid in the construction of probabilistic event trees and to answer common questions that arise during volcanic crises. The primary module contains chronologies of volcanic unrest. This module allows us to query eruption chronologies, monitoring data, descriptive information, operational data, and eruptive phases alongside other global databases, such as WOVOdat and the Global Volcanism Program. The EFIS database is in the early stages of development and population; thus, this contribution also is a request for feedback from the community. Preliminary data are already benefitting several research areas. For example, VDAP provided a forecast of the likely remaining eruption duration for Sinabung volcano, Indonesia, using global data taken from similar volcanoes in the DomeHaz database module, in combination with local monitoring time-series data. In addition, EFIS seismologists used a beta-statistic test and empirically-derived thresholds to identify distal volcano-tectonic earthquake anomalies preceding Alaska volcanic eruptions during 1990-2015 to retrospectively evaluate Alaska Volcano Observatory eruption precursors. This has identified important considerations for selecting analog volcanoes for global data analysis, such as differences between closed and open system volcanoes.

Mind the gaps - the epidemiology of poor-quality anti-malarials in the malarious world - analysis of the WorldWide Antimalarial Resistance Network database

PubMed Central

2014-01-01

Background Poor quality medicines threaten the lives of millions of patients and are alarmingly common in many parts of the world. Nevertheless, the global extent of the problem remains unknown. Accurate estimates of the epidemiology of poor quality medicines are sparse and are influenced by sampling methodology and diverse chemical analysis techniques. In order to understand the existing data, the Antimalarial Quality Scientific Group at WWARN built a comprehensive, open-access, global database and linked Antimalarial Quality Surveyor, an online visualization tool. Analysis of the database is described here, the limitations of the studies and data reported, and their public health implications discussed. Methods The database collates customized summaries of 251 published anti-malarial quality reports in English, French and Spanish by time and location since 1946. It also includes information on assays to determine quality, sampling and medicine regulation. Results No publicly available reports for 60.6% (63) of the 104 malaria-endemic countries were found. Out of 9,348 anti-malarials sampled, 30.1% (2,813) failed chemical/packaging quality tests with 39.3% classified as falsified, 2.3% as substandard and 58.3% as poor quality without evidence available to categorize them as either substandard or falsified. Only 32.3% of the reports explicitly described their definitions of medicine quality and just 9.1% (855) of the samples collected in 4.6% (six) surveys were conducted using random sampling techniques. Packaging analysis was only described in 21.5% of publications and up to twenty wrong active ingredients were found in falsified anti-malarials. Conclusions There are severe neglected problems with anti-malarial quality but there are important caveats to accurately estimate the prevalence and distribution of poor quality anti-malarials. The lack of reports in many malaria-endemic areas, inadequate sampling techniques and inadequate chemical analytical methods and instrumental procedures emphasizes the need to interpret medicine quality results with caution. The available evidence demonstrates the need for more investment to improve both sampling and analytical methodology and to achieve consensus in defining different types of poor quality medicines. PMID:24712972

Development of a land-cover characteristics database for the conterminous U.S.

USGS Publications Warehouse

Loveland, Thomas R.; Merchant, J.W.; Ohlen, D.O.; Brown, Jesslyn F.

1991-01-01

Information regarding the characteristics and spatial distribution of the Earth's land cover is critical to global environmental research. A prototype land-cover database for the conterminous United States designed for use in a variety of global modelling, monitoring, mapping, and analytical endeavors has been created. The resultant database contains multiple layers, including the source AVHRR data, the ancillary data layers, the land-cover regions defined by the research, and translation tables linking the regions to other land classification schema (for example, UNESCO, USGS Anderson System). The land-cover characteristics database can be analyzed, transformed, or aggregated by users to meet a broad spectrum of requirements. -from Authors

ITER L-mode confinement database

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaye, S.M.

This paper describes the content of an L-mode database that has been compiled with data from Alcator C-Mod, ASDEX, DIII, DIII-D, FTU, JET, JFT-2M, JT-60, PBX-M, PDX, T-10, TEXTOR, TFTR, and Tore-Supra. The database consists of a total of 2938 entries, 1881 of which are in the L-phase while 922 are ohmically heated only (OH). Each entry contains up to 95 descriptive parameters, including global and kinetic information, machine conditioning, and configuration. The paper presents a description of the database and the variables contained therein, and it also presents global and thermal scalings along with predictions for ITER.

Water and carbon stable isotope records from natural archives: a new database and interactive online platform for data browsing, visualizing and downloading

NASA Astrophysics Data System (ADS)

Bolliet, Timothé; Brockmann, Patrick; Masson-Delmotte, Valérie; Bassinot, Franck; Daux, Valérie; Genty, Dominique; Landais, Amaelle; Lavrieux, Marlène; Michel, Elisabeth; Ortega, Pablo; Risi, Camille; Roche, Didier M.; Vimeux, Françoise; Waelbroeck, Claire

2016-08-01

Past climate is an important benchmark to assess the ability of climate models to simulate key processes and feedbacks. Numerous proxy records exist for stable isotopes of water and/or carbon, which are also implemented inside the components of a growing number of Earth system model. Model-data comparisons can help to constrain the uncertainties associated with transfer functions. This motivates the need of producing a comprehensive compilation of different proxy sources. We have put together a global database of proxy records of oxygen (δ18O), hydrogen (δD) and carbon (δ13C) stable isotopes from different archives: ocean and lake sediments, corals, ice cores, speleothems and tree-ring cellulose. Source records were obtained from the georeferenced open access PANGAEA and NOAA libraries, complemented by additional data obtained from a literature survey. About 3000 source records were screened for chronological information and temporal resolution of proxy records. Altogether, this database consists of hundreds of dated δ18O, δ13C and δD records in a standardized simple text format, complemented with a metadata Excel catalog. A quality control flag was implemented to describe age markers and inform on chronological uncertainty. This compilation effort highlights the need to homogenize and structure the format of datasets and chronological information as well as enhance the distribution of published datasets that are currently highly fragmented and scattered. We also provide an online portal based on the records included in this database with an intuitive and interactive platform (http://climateproxiesfinder.ipsl.fr/), allowing one to easily select, visualize and download subsets of the homogeneously formatted records that constitute this database, following a choice of search criteria, and to upload new datasets. In the last part, we illustrate the type of application allowed by our database by comparing several key periods highly investigated by the paleoclimate community. For coherency with the Paleoclimate Modelling Intercomparison Project (PMIP), we focus on records spanning the past 200 years, the mid-Holocene (MH, 5.5-6.5 ka; calendar kiloyears before 1950), the Last Glacial Maximum (LGM, 19-23 ka), and those spanning the last interglacial period (LIG, 115-130 ka). Basic statistics have been applied to characterize anomalies between these different periods. Most changes from the MH to present day and from LIG to MH appear statistically insignificant. Significant global differences are reported from LGM to MH with regional discrepancies in signals from different archives and complex patterns.

S-World: A high resolution global soil database for simulation modelling (Invited)

NASA Astrophysics Data System (ADS)

Stoorvogel, J. J.

2013-12-01

There is an increasing call for high resolution soil information at the global level. A good example for such a call is the Global Gridded Crop Model Intercomparison carried out within AgMIP. While local studies can make use of surveying techniques to collect additional techniques this is practically impossible at the global level. It is therefore important to rely on legacy data like the Harmonized World Soil Database. Several efforts do exist that aim at the development of global gridded soil property databases. These estimates of the variation of soil properties can be used to assess e.g., global soil carbon stocks. However, they do not allow for simulation runs with e.g., crop growth simulation models as these models require a description of the entire pedon rather than a few soil properties. This study provides the required quantitative description of pedons at a 1 km resolution for simulation modelling. It uses the Harmonized World Soil Database (HWSD) for the spatial distribution of soil types, the ISRIC-WISE soil profile database to derive information on soil properties per soil type, and a range of co-variables on topography, climate, and land cover to further disaggregate the available data. The methodology aims to take stock of these available data. The soil database is developed in five main steps. Step 1: All 148 soil types are ordered on the basis of their expected topographic position using e.g., drainage, salinization, and pedogenesis. Using the topographic ordering and combining the HWSD with a digital elevation model allows for the spatial disaggregation of the composite soil units. This results in a new soil map with homogeneous soil units. Step 2: The ranges of major soil properties for the topsoil and subsoil of each of the 148 soil types are derived from the ISRIC-WISE soil profile database. Step 3: A model of soil formation is developed that focuses on the basic conceptual question where we are within the range of a particular soil property at a particular location given a specific soil type. The soil properties are predicted for each grid cell based on the soil type, the corresponding ranges of soil properties, and the co-variables. Step 4: Standard depth profiles are developed for each of the soil types using the diagnostic criteria of the soil types and soil profile information from the ISRIC-WISE database. The standard soil profiles are combined with the the predicted values for the topsoil and subsoil yielding unique soil profiles at each location. Step 5: In a final step, additional soil properties are added to the database using averages for the soil types and pedo-transfer functions. The methodology, denominated S-World (Soils of the World), results in readily available global maps with quantitative pedon data for modelling purposes. It forms the basis for the Global Gridded Crop Model Intercomparison carried out within AgMIP.

Global Account of Barriers and Facilitators of Physical Activity Among Patients with Diabetes Mellitus: A Narrative Review of the Literature.

PubMed

Adeniyi, Ade F; Anjana, Ranjit M; Weber, Mary B

2016-01-01

With diabetes rates escalating globally, there is the need for a better integration of all aspects of diabetes care for improved population outcomes. An understanding, not only of regional but global literature on physical activity barriers and its facilitators is important if healthcare providers and policy makers are to create programs tailored to their populations. Herein, we report the results of a narrative review of the global barriers and facilitators of physical activity for patients with diabetes mellitus. An in-depth literature search was conducted to identify English-language studies that examined physical activity barriers and associated facilitators among patients with diabetes mellitus. Major electronic literature databases that were searched included Google Scholar, PubMed, Hub-Med, and Highwire. Studies were available from Africa, Asia, Australia, Europe, and, predominantly North America. A total of 34 predominantly internal barriers emerged globally. The most commonly reported were time constrains, fear of provoking additional disorders, exercise venue and weather related barriers. Facilitators of physical activity were reported for most of the internal barriers (e.g. time constraints, lack of knowledge etc) while the external barriers (e.g. weather, environmental pollution etc) received only a minimal attention. Globally, patients with diabetes are confronted with an enormous number of physical activity barriers. Unlike the robust solutions proffered for the internal barriers, the literature is largely silent about solutions to the external barriers, which though fewer, may be highly influential. Additional data is needed to better understand physical activity behaviors in populations outside of North America.

Database Development for Electrical, Electronic, and Electromechanical (EEE) Parts for the International Space Station Alpha

NASA Technical Reports Server (NTRS)

Wassil-Grimm, Andrew D.

1997-01-01

More effective electronic communication processes are needed to transfer contractor and international partner data into NASA and prime contractor baseline database systems. It is estimated that the International Space Station Alpha (ISSA) parts database will contain up to one million parts each of which may require database capabilities for approximately one thousand bytes of data for each part. The resulting gigabyte database must provide easy access to users who will be preparing multiple analyses and reports in order to verify as-designed, as-built, launch, on-orbit, and return configurations for up to 45 missions associated with the construction of the ISSA. Additionally, Internet access to this data base is strongly indicated to allow multiple user access from clients located in many foreign countries. This summer's project involved familiarization and evaluation of the ISSA Electrical, Electronic, and Electromechanical (EEE) Parts data and the process of electronically managing these data. Particular attention was devoted to improving the interfaces among the many elements of the ISSA information system and its global customers and suppliers. Additionally, prototype queries were developed to facilitate the identification of data changes in the data base, verifications that the designs used only approved parts, and certifications that the flight hardware containing EEE parts was ready for flight. This project also resulted in specific recommendations to NASA for further development in the area of EEE parts database development and usage.

The epidemiology of acne vulgaris in late adolescence

PubMed Central

Lynn, Darren D; Umari, Tamara; Dunnick, Cory A; Dellavalle, Robert P

2016-01-01

Importance Acne vulgaris is the most common skin condition affecting late adolescents across the globe. Although prior studies have evaluated epidemiologic patterns of acne vulgaris in various ethnicities and regions, adequate understanding of the worldwide burden of the disease associated with patients in their late adolescence (15–19-year olds) remains lacking. Objective To assess the global burden of the disease associated with acne vulgaris for late adolescents (15–19-year olds) and provide an overview of the epidemiology, pathophysiology, and treatment options for acne in this population. Design Database summary study. Setting Global Burden of Disease Study 2010 database. Participants Global Burden of Disease regions comprised countries with prevalence of acne vulgaris between the ages of 15 and 19 years. Main outcomes and measures Geographic region-level disability-adjusted life year rates (per 100,000 persons) associated with acne vulgaris in years 1990 through 2010. Median percentage change in disability-adjusted life year rates was estimated for each region across the specified study period. Conclusion and relevance Acne vulgaris-associated disease burden exhibits global distribution and has continued to grow in prevalence over time within this population. This continued growth suggests an unmet dermatologic need worldwide for this disorder and potential opportunities for improved access and delivery of dermatologic care. Our analysis of the literature reveals numerous opportunities for enhanced patient care. To that end, we highlight some of the effective and promising treatments currently available and address important factors, such as sex, nationality, genetics, pathophysiology, and diet, as they relate to acne vulgaris in late adolescence. PMID:26955297

The IUGS/IAGC Task Group on Global Geochemical Baselines

USGS Publications Warehouse

Smith, David B.; Wang, Xueqiu; Reeder, Shaun; Demetriades, Alecos

2012-01-01

The Task Group on Global Geochemical Baselines, operating under the auspices of both the International Union of Geological Sciences (IUGS) and the International Association of Geochemistry (IAGC), has the long-term goal of establishing a global geochemical database to document the concentration and distribution of chemical elements in the Earth’s surface or near-surface environment. The database and accompanying element distribution maps represent a geochemical baseline against which future human-induced or natural changes to the chemistry of the land surface may be recognized and quantified. In order to accomplish this long-term goal, the activities of the Task Group include: (1) developing partnerships with countries conducting broad-scale geochemical mapping studies; (2) providing consultation and training in the form of workshops and short courses; (3) organizing periodic international symposia to foster communication among the geochemical mapping community; (4) developing criteria for certifying those projects whose data are acceptable in a global geochemical database; (5) acting as a repository for data collected by those projects meeting the criteria for standardization; (6) preparing complete metadata for the certified projects; and (7) preparing, ultimately, a global geochemical database. This paper summarizes the history and accomplishments of the Task Group since its first predecessor project was established in 1988.

Global Thermal Power Plants Database: Unit-Based CO2, SO2, NOX and PM2.5 Emissions in 2010

NASA Astrophysics Data System (ADS)

Tong, D.; Qiang, Z.; Davis, S. J.

2016-12-01

There are more than 30,000 thermal power plants now operating worldwide, reflecting a tremendously diverse infrastructure that includes units burning oil, natural gas, coal and biomass and ranging in capacity from <1MW to >1GW. Although the electricity generated by this infrastructure is vital to economic activities across the world, it also produces more CO2 and air pollution emissions than any other industry sector. Here we present a new database of global thermal power-generating units and their emissions as of 2010, GPED (Global Power Emissions Database), including the detailed unit information of installed capacity, operation year, geographic location, fuel type and control measures for more than 70000 units. In this study, we have compiled, combined, and harmonized the available underlying data related to thermal power-generating units (e.g. eGRID of USA, CPED of China and published Indian power plants database), and then analyzed the generating capacity, capacity factor, fuel type, age, location, and installed pollution-control technology in order to determine those units with disproportionately high levels of emissions. In total, this work is of great importance for improving spatial distribution of global thermal power plants emissions and exploring their environmental impacts at global scale.

Global Inventory of Gas Geochemistry Data from Fossil Fuel, Microbial and Burning Sources, version 2017

NASA Astrophysics Data System (ADS)

Sherwood, Owen A.; Schwietzke, Stefan; Arling, Victoria A.; Etiope, Giuseppe

2017-08-01

The concentration of atmospheric methane (CH4) has more than doubled over the industrial era. To help constrain global and regional CH4 budgets, inverse (top-down) models incorporate data on the concentration and stable carbon (δ13C) and hydrogen (δ2H) isotopic ratios of atmospheric CH4. These models depend on accurate δ13C and δ2H end-member source signatures for each of the main emissions categories. Compared with meticulous measurement and calibration of isotopic CH4 in the atmosphere, there has been relatively less effort to characterize globally representative isotopic source signatures, particularly for fossil fuel sources. Most global CH4 budget models have so far relied on outdated source signature values derived from globally nonrepresentative data. To correct this deficiency, we present a comprehensive, globally representative end-member database of the δ13C and δ2H of CH4 from fossil fuel (conventional natural gas, shale gas, and coal), modern microbial (wetlands, rice paddies, ruminants, termites, and landfills and/or waste) and biomass burning sources. Gas molecular compositional data for fossil fuel categories are also included with the database. The database comprises 10 706 samples (8734 fossil fuel, 1972 non-fossil) from 190 published references. Mean (unweighted) δ13C signatures for fossil fuel CH4 are significantly lighter than values commonly used in CH4 budget models, thus highlighting potential underestimation of fossil fuel CH4 emissions in previous CH4 budget models. This living database will be updated every 2-3 years to provide the atmospheric modeling community with the most complete CH4 source signature data possible. Database digital object identifier (DOI): https://doi.org/10.15138/G3201T.

Toward an Open-Access Global Database for Mapping, Control, and Surveillance of Neglected Tropical Diseases

PubMed Central

Hürlimann, Eveline; Schur, Nadine; Boutsika, Konstantina; Stensgaard, Anna-Sofie; Laserna de Himpsl, Maiti; Ziegelbauer, Kathrin; Laizer, Nassor; Camenzind, Lukas; Di Pasquale, Aurelio; Ekpo, Uwem F.; Simoonga, Christopher; Mushinge, Gabriel; Saarnak, Christopher F. L.; Utzinger, Jürg; Kristensen, Thomas K.; Vounatsou, Penelope

2011-01-01

Background After many years of general neglect, interest has grown and efforts came under way for the mapping, control, surveillance, and eventual elimination of neglected tropical diseases (NTDs). Disease risk estimates are a key feature to target control interventions, and serve as a benchmark for monitoring and evaluation. What is currently missing is a georeferenced global database for NTDs providing open-access to the available survey data that is constantly updated and can be utilized by researchers and disease control managers to support other relevant stakeholders. We describe the steps taken toward the development of such a database that can be employed for spatial disease risk modeling and control of NTDs. Methodology With an emphasis on schistosomiasis in Africa, we systematically searched the literature (peer-reviewed journals and ‘grey literature’), contacted Ministries of Health and research institutions in schistosomiasis-endemic countries for location-specific prevalence data and survey details (e.g., study population, year of survey and diagnostic techniques). The data were extracted, georeferenced, and stored in a MySQL database with a web interface allowing free database access and data management. Principal Findings At the beginning of 2011, our database contained more than 12,000 georeferenced schistosomiasis survey locations from 35 African countries available under http://www.gntd.org. Currently, the database is expanded to a global repository, including a host of other NTDs, e.g. soil-transmitted helminthiasis and leishmaniasis. Conclusions An open-access, spatially explicit NTD database offers unique opportunities for disease risk modeling, targeting control interventions, disease monitoring, and surveillance. Moreover, it allows for detailed geostatistical analyses of disease distribution in space and time. With an initial focus on schistosomiasis in Africa, we demonstrate the proof-of-concept that the establishment and running of a global NTD database is feasible and should be expanded without delay. PMID:22180793

A Partnership for Public Health: USDA Branded Food Products Database

USDA-ARS?s Scientific Manuscript database

The importance of comprehensive food composition databases is more critical than ever in helping to address global food security. The USDA National Nutrient Database for Standard Reference is the “gold standard” for food composition databases. The presentation will include new developments in stren...

New standards for reducing gravity data: The North American gravity database

USGS Publications Warehouse

Hinze, W. J.; Aiken, C.; Brozena, J.; Coakley, B.; Dater, D.; Flanagan, G.; Forsberg, R.; Hildenbrand, T.; Keller, Gordon R.; Kellogg, J.; Kucks, R.; Li, X.; Mainville, A.; Morin, R.; Pilkington, M.; Plouff, D.; Ravat, D.; Roman, D.; Urrutia-Fucugauchi, J.; Veronneau, M.; Webring, M.; Winester, D.

2005-01-01

The North American gravity database as well as databases from Canada, Mexico, and the United States are being revised to improve their coverage, versatility, and accuracy. An important part of this effort is revising procedures for calculating gravity anomalies, taking into account our enhanced computational power, improved terrain databases and datums, and increased interest in more accurately defining long-wavelength anomaly components. Users of the databases may note minor differences between previous and revised database values as a result of these procedures. Generally, the differences do not impact the interpretation of local anomalies but do improve regional anomaly studies. The most striking revision is the use of the internationally accepted terrestrial ellipsoid for the height datum of gravity stations rather than the conventionally used geoid or sea level. Principal facts of gravity observations and anomalies based on both revised and previous procedures together with germane metadata will be available on an interactive Web-based data system as well as from national agencies and data centers. The use of the revised procedures is encouraged for gravity data reduction because of the widespread use of the global positioning system in gravity fieldwork and the need for increased accuracy and precision of anomalies and consistency with North American and national databases. Anomalies based on the revised standards should be preceded by the adjective "ellipsoidal" to differentiate anomalies calculated using heights with respect to the ellipsoid from those based on conventional elevations referenced to the geoid. ?? 2005 Society of Exploration Geophysicists. All rights reserved.

Internationally coordinated glacier monitoring - a timeline since 1894

NASA Astrophysics Data System (ADS)

Nussbaumer, Samuel U.; Armstrong, Richard; Fetterer, Florence; Gärtner-Roer, Isabelle; Hoelzle, Martin; Machguth, Horst; Mölg, Nico; Paul, Frank; Raup, Bruce H.; Zemp, Michael

2016-04-01

Changes in glaciers and ice caps provide some of the clearest evidence of climate change, with impacts on sea-level variations, regional hydrological cycles, and natural hazard situations. Therefore, glaciers have been recognized as an Essential Climate Variable (ECV). Internationally coordinated collection and distribution of standardized information about the state and change of glaciers and ice caps was initiated in 1894 and is today organized within the Global Terrestrial Network for Glaciers (GTN-G). GTN-G ensures the continuous development and adaptation of the international strategies to the long-term needs of users in science and policy. A GTN-G Steering Committee coordinates, supports and advices the operational bodies responsible for the international glacier monitoring, which are the World Glacier Monitoring Service (WGMS), the US National Snow and Ice Data Center (NSIDC), and the Global Land Ice Measurements from Space (GLIMS) initiative. In this presentation, we trace the development of the internationally coordinated glacier monitoring since its beginning in the 19th century. Today, several online databases containing a wealth of diverse data types with different levels of detail and global coverage provide fast access to continuously updated information on glacier fluctuation and inventory data. All glacier datasets are made freely available through the respective operational bodies within GTN-G, and can be accessed through the GTN-G Global Glacier Browser (http://www.gtn-g.org/data_browser.html). Glacier inventory data (e.g., digital outlines) are available for about 180,000 glaciers (GLIMS database, RGI - Randolph Glacier Inventory, WGI - World Glacier Inventory). Glacier front variations with about 45,000 entries since the 17th century and about 6,200 glaciological and geodetic mass (volume) change observations dating back to the 19th century are available in the Fluctuations of Glaciers (FoG) database. These datasets reveal clear evidence that glacier retreat and mass loss is a global phenomenon. Glaciological and geodetic observations show that the rates of the 21st-century mass loss are unprecedented on a global scale, for the time period observed, and probably also for recorded history, as indicated in glacier reconstructions from written and illustrated documents. The databases are supplemented by specific index datasets (e.g., glacier thickness data) and a dataset containing information on special events including glacier surges, glacier lake outbursts, ice avalanches, eruptions of ice-clad volcanoes, etc. related to about 200 glaciers. A special database of glacier photographs (GPC - Glacier Photograph Collection) contains more than 15,000 pictures from around 500 glaciers, some of them dating back to the mid-19th century. Current efforts are to close remaining observational gaps regarding data both from in-situ measurements and remote sensing, to establish a well-distributed baseline for sound estimates of climate-related glacier changes and their impacts. Within the framework of dedicated capacity building and twinning activities, disrupted long-term mass balance programmes in Central Asia have recently been resumed, and the continuation of mass balance measurements in the Tropical Andes has been supported. New data also emerge from several research projects using NASA and ESA sensors and are actively integrated into the GTN-G databases. Key tasks for the future include the quantitative assessment of uncertainties of available measurements, and their representativeness for changes in the respective mountain ranges. For this, a well-considered integration of in-situ measurements, remotely sensed observations, and numerical modelling is required.

Palaeo sea-level and ice-sheet databases: problems, strategies and perspectives

NASA Astrophysics Data System (ADS)

Rovere, Alessio; Düsterhus, André; Carlson, Anders; Barlow, Natasha; Bradwell, Tom; Dutton, Andrea; Gehrels, Roland; Hibbert, Fiona; Hijma, Marc; Horton, Benjamin; Klemann, Volker; Kopp, Robert; Sivan, Dorit; Tarasov, Lev; Törnqvist, Torbjorn

2016-04-01

Databases of palaeoclimate data have driven many major developments in understanding the Earth system. The measurement and interpretation of palaeo sea-level and ice-sheet data that form such databases pose considerable challenges to the scientific communities that use them for further analyses. In this paper, we build on the experience of the PALSEA (PALeo constraints on SEA level rise) community, which is a working group inside the PAGES (Past Global Changes) project, to describe the challenges and best strategies that can be adopted to build a self-consistent and standardised database of geological and geochemical data related to palaeo sea levels and ice sheets. Our aim in this paper is to identify key points that need attention and subsequent funding when undertaking the task of database creation. We conclude that any sea-level or ice-sheet database must be divided into three instances: i) measurement; ii) interpretation; iii) database creation. Measurement should include postion, age, description of geological features, and quantification of uncertainties. All must be described as objectively as possible. Interpretation can be subjective, but it should always include uncertainties and include all the possible interpretations, without unjustified a priori exclusions. We propose that, in the creation of a database, an approach based on Accessibility, Transparency, Trust, Availability, Continued updating, Completeness and Communication of content (ATTAC3) must be adopted. Also, it is essential to consider the community structure that creates and benefits of a database. We conclude that funding sources should consider to address not only the creation of original data in specific research-question oriented projects, but also include the possibility to use part of the funding for IT-related and database creation tasks, which are essential to guarantee accessibility and maintenance of the collected data.

An overview of acupuncture for psoriasis vulgaris, 2009-2014.

PubMed

Xiang, Yu; Wu, Xing; Lu, Chuanjian; Wang, Kaiyi

2017-05-01

Psoriasis is a chronic, proliferative, and inflammatory skin disease which affects around 2-3% of the global population. Current pharmacotherapy is effective, however medication with safe and long-lasting therapeutic effects is needed. Acupuncture for psoriasis is widely used in China as well as other Asian countries, and is gradually becoming accepted globally. To determine the characteristics and advantages of acupuncture treatment for psoriasis, and to improve the clinical outcomes of this disease in the future, this review summarizes literature on acupuncture treatment for psoriasis published between 2009 and 2014. Databases search was conducted with the China National Knowledge Infrastructure (CNKI), MEDLINE, and PubMed databases over a time period ranging from January 2009 to December 2014. The condition term was "psoriasis" and the key intervention terms were "needling", "moxibustion", "auriculotherapy", "cupping and bloodletting therapy", "catgut embedding therapy", "point-injection therapy", "traditional Chinese medicine fumigation therapy", "fire needling therapy", and "vesiculation moxibustion". Languages were limited to English and Chinese. Therapeutic mechanisms, therapy, therapeutic characteristics, advantages and limits of acupuncture for psoriasis are discussed. The conclusion is that acupuncture therapies for psoriasis are simple, convenient, and effective, with long-lasting therapeutic effects as well as minimal side effects and toxicity.

Inequalities in global health inequalities research: A 50-year bibliometric analysis (1966-2015)

PubMed Central

Pericàs, Juan M.; Benach, Joan

2018-01-01

Background Increasing evidence shows that health inequalities exist between and within countries, and emphasis has been placed on strengthening the production and use of the global health inequalities research, so as to improve capacities to act. Yet, a comprehensive overview of this evidence base is still needed, to determine what is known about the global and historical scientific production on health inequalities to date, how is it distributed in terms of country income groups and world regions, how has it changed over time, and what international collaboration dynamics exist. Methods A comprehensive bibliometric analysis of the global scientific production on health inequalities, from 1966 to 2015, was conducted using Scopus database. The historical and global evolution of the study of health inequalities was considered, and through joinpoint regression analysis and visualisation network maps, the preceding questions were examined. Findings 159 countries (via authorship affiliation) contributed to this scientific production, three times as many countries than previously found. Scientific output on health inequalities has exponentially grown over the last five decades, with several marked shift points, and a visible country-income group affiliation gradient in the initiation and consistent publication frequency. Higher income countries, especially Anglo-Saxon and European countries, disproportionately dominate first and co-authorship, and are at the core of the global collaborative research networks, with the Global South on the periphery. However, several country anomalies exist that suggest that the causes of these research inequalities, and potential underlying dependencies, run deeper than simply differences in country income and language. Conclusions Whilst the global evidence base has expanded, Global North-South research gaps exist, persist and, in some cases, are widening. Greater understanding of the structural determinants of these research inequalities and national research capacities is needed, to further strengthen the evidence base, and support the long term agenda for global health equity. PMID:29385197

Active Exploration of Large 3D Model Repositories.

PubMed

Gao, Lin; Cao, Yan-Pei; Lai, Yu-Kun; Huang, Hao-Zhi; Kobbelt, Leif; Hu, Shi-Min

2015-12-01

With broader availability of large-scale 3D model repositories, the need for efficient and effective exploration becomes more and more urgent. Existing model retrieval techniques do not scale well with the size of the database since often a large number of very similar objects are returned for a query, and the possibilities to refine the search are quite limited. We propose an interactive approach where the user feeds an active learning procedure by labeling either entire models or parts of them as "like" or "dislike" such that the system can automatically update an active set of recommended models. To provide an intuitive user interface, candidate models are presented based on their estimated relevance for the current query. From the methodological point of view, our main contribution is to exploit not only the similarity between a query and the database models but also the similarities among the database models themselves. We achieve this by an offline pre-processing stage, where global and local shape descriptors are computed for each model and a sparse distance metric is derived that can be evaluated efficiently even for very large databases. We demonstrate the effectiveness of our method by interactively exploring a repository containing over 100 K models.

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

PubMed Central

Perez-Riverol, Yasset; Alpi, Emanuele; Wang, Rui; Hermjakob, Henning; Vizcaíno, Juan Antonio

2015-01-01

Compared to other data-intensive disciplines such as genomics, public deposition and storage of MS-based proteomics, data are still less developed due to, among other reasons, the inherent complexity of the data and the variety of data types and experimental workflows. In order to address this need, several public repositories for MS proteomics experiments have been developed, each with different purposes in mind. The most established resources are the Global Proteome Machine Database (GPMDB), PeptideAtlas, and the PRIDE database. Additionally, there are other useful (in many cases recently developed) resources such as ProteomicsDB, Mass Spectrometry Interactive Virtual Environment (MassIVE), Chorus, MaxQB, PeptideAtlas SRM Experiment Library (PASSEL), Model Organism Protein Expression Database (MOPED), and the Human Proteinpedia. In addition, the ProteomeXchange consortium has been recently developed to enable better integration of public repositories and the coordinated sharing of proteomics information, maximizing its benefit to the scientific community. Here, we will review each of the major proteomics resources independently and some tools that enable the integration, mining and reuse of the data. We will also discuss some of the major challenges and current pitfalls in the integration and sharing of the data. PMID:25158685

Workshop report: Identifying opportunities for global integration of toxicogenomics databases, 26-27 June 2013, Research Triangle Park, NC, USA.

PubMed

Hendrickx, Diana M; Boyles, Rebecca R; Kleinjans, Jos C S; Dearry, Allen

2014-12-01

A joint US-EU workshop on enhancing data sharing and exchange in toxicogenomics was held at the National Institute for Environmental Health Sciences. Currently, efficient reuse of data is hampered by problems related to public data availability, data quality, database interoperability (the ability to exchange information), standardization and sustainability. At the workshop, experts from universities and research institutes presented databases, studies, organizations and tools that attempt to deal with these problems. Furthermore, a case study showing that combining toxicogenomics data from multiple resources leads to more accurate predictions in risk assessment was presented. All participants agreed that there is a need for a web portal describing the diverse, heterogeneous data resources relevant for toxicogenomics research. Furthermore, there was agreement that linking more data resources would improve toxicogenomics data analysis. To outline a roadmap to enhance interoperability between data resources, the participants recommend collecting user stories from the toxicogenomics research community on barriers in data sharing and exchange currently hampering answering to certain research questions. These user stories may guide the prioritization of steps to be taken for enhancing integration of toxicogenomics databases.

ForC: a global database of forest carbon stocks and fluxes.

PubMed

Anderson-Teixeira, Kristina J; Wang, Maria M H; McGarvey, Jennifer C; Herrmann, Valentine; Tepley, Alan J; Bond-Lamberty, Ben; LeBauer, David S

2018-06-01

Forests play an influential role in the global carbon (C) cycle, storing roughly half of terrestrial C and annually exchanging with the atmosphere more than five times the carbon dioxide (CO 2 ) emitted by anthropogenic activities. Yet, scaling up from field-based measurements of forest C stocks and fluxes to understand global scale C cycling and its climate sensitivity remains an important challenge. Tens of thousands of forest C measurements have been made, but these data have yet to be integrated into a single database that makes them accessible for integrated analyses. Here we present an open-access global Forest Carbon database (ForC) containing previously published records of field-based measurements of ecosystem-level C stocks and annual fluxes, along with disturbance history and methodological information. ForC expands upon the previously published tropical portion of this database, TropForC (https://doi.org/10.5061/dryad.t516f), now including 17,367 records (previously 3,568) representing 2,731 plots (previously 845) in 826 geographically distinct areas. The database covers all forested biogeographic and climate zones, represents forest stands of all ages, and currently includes data collected between 1934 and 2015. We expect that ForC will prove useful for macroecological analyses of forest C cycling, for evaluation of model predictions or remote sensing products, for quantifying the contribution of forests to the global C cycle, and for supporting international efforts to inventory forest carbon and greenhouse gas exchange. A dynamic version of ForC is maintained at on GitHub (https://GitHub.com/forc-db), and we encourage the research community to collaborate in updating, correcting, expanding, and utilizing this database. ForC is an open access database, and we encourage use of the data for scientific research and education purposes. Data may not be used for commercial purposes without written permission of the database PI. Any publications using ForC data should cite this publication and Anderson-Teixeira et al. (2016a) (see Metadata S1). No other copyright or cost restrictions are associated with the use of this data set. © 2018 by the Ecological Society of America.

Global gridded crop specific agricultural areas from 1961-2014

NASA Astrophysics Data System (ADS)

Konar, M.; Jackson, N. D.

2017-12-01

Current global cropland datasets are limited in crop specificity and temporal resolution. Time series maps of crop specific agricultural areas would enable us to better understand the global agricultural geography of the 20th century. To this end, we develop a global gridded dataset of crop specific agricultural areas from 1961-2014. To do this, we downscale national cropland information using a probabilistic approach. Our method relies upon gridded Global Agro-Ecological Zones (GAEZ) maps, the History Database of the Global Environment (HYDE), and crop calendars from Sacks et al. (2010). We estimate crop-specific agricultural areas for a 0.25 degree spatial grid and annual time scale for all major crops. We validate our global estimates for the year 2000 with Monfreda et al. (2008) and our time series estimates within the United States using government data. This database will contribute to our understanding of global agricultural change of the past century.

The Public Health Threat of Road Traffic Accidents in Nigeria: A Call to Action

PubMed Central

Onyemaechi, NOC; Ofoma, UR

2016-01-01

Public health experts worldwide concede that there is a global epidemic of road traffic accidents (RTA). Globally, RTA is the leading cause of injury-related deaths. In Nigeria, injuries and deaths resulting from RTA are on the rise and are Nigeria's third-leading cause of overall deaths, the leading cause of trauma-related deaths and the most common cause of disability. Do RTA constitute a public health problem in Nigeria? If so, is there a pragmatic approach to combat this problem? A systematic literature search using the advanced features of various databases such as PubMed, Scopus, Embase, Google, and directory of open access journals was carried out using the key words “ RTA, public health problem, government response, Nigeria.” Out of initial 850 articles retrieved from the search 15 articles that suited the study were included in this review. There is need to view RTA s as an issue of urgent national importance that needs urgent attention aimed at reducing the health, social, and economic impact. Policy makers at the various levels of government need to recognize this growing problem as a public health crisis and design appropriate policy responses that will back up with meticulous implementation. PMID:28480093

The Public Health Threat of Road Traffic Accidents in Nigeria: A Call to Action.

PubMed

Onyemaechi, Noc; Ofoma, U R

2016-01-01

Public health experts worldwide concede that there is a global epidemic of road traffic accidents (RTA). Globally, RTA is the leading cause of injury-related deaths. In Nigeria, injuries and deaths resulting from RTA are on the rise and are Nigeria's third-leading cause of overall deaths, the leading cause of trauma-related deaths and the most common cause of disability. Do RTA constitute a public health problem in Nigeria? If so, is there a pragmatic approach to combat this problem? A systematic literature search using the advanced features of various databases such as PubMed, Scopus, Embase, Google, and directory of open access journals was carried out using the key words " RTA, public health problem, government response, Nigeria." Out of initial 850 articles retrieved from the search 15 articles that suited the study were included in this review. There is need to view RTA s as an issue of urgent national importance that needs urgent attention aimed at reducing the health, social, and economic impact. Policy makers at the various levels of government need to recognize this growing problem as a public health crisis and design appropriate policy responses that will back up with meticulous implementation.

Radiocarbon Dating the Anthropocene

NASA Astrophysics Data System (ADS)

Chaput, M. A.; Gajewski, K. J.

2015-12-01

The Anthropocene has no agreed start date since current suggestions for its beginning range from Pre-Industrial times to the Industrial Revolution, and from the mid-twentieth century to the future. To set the boundary of the Anthropocene in geological time, we must first understand when, how and to what extent humans began altering the Earth system. One aspect of this involves reconstructing the effects of prehistoric human activity on the physical landscape. However, for global reconstructions of land use and land cover change to be more accurately interpreted in the context of human interaction with the landscape, large-scale spatio-temporal demographic changes in prehistoric populations must be known. Estimates of the relative number of prehistoric humans in different regions of the world and at different moments in time are needed. To this end, we analyze a dataset of radiocarbon dates from the Canadian Archaeological Radiocarbon Database (CARD), the Palaeolithic Database of Europe and the AustArch Database of Australia, as well as published dates from South America. This is the first time such a large quantity of dates (approximately 60,000) has been mapped and studied at a global scale. Initial results from the analysis of temporal frequency distributions of calibrated radiocarbon dates, assumed to be proportional to population density, will be discussed. The utility of radiocarbon dates in studies of the Anthropocene will be evaluated and potential links between population density and changes in atmospheric greenhouse gas concentrations, climate, migration patterning and fire frequency coincidence will be considered.

Statin-Associated Polymyalgia Rheumatica. An Analysis Using WHO Global Individual Case Safety Database: A Case/Non-Case Approach

PubMed Central

de Jong, Hilda J. I.; Saldi, Siti R. F.; Klungel, Olaf H.; Vandebriel, Rob J.; Souverein, Patrick C.; Meyboom, Ronald H. B.; Passier, J. L. M. (Anneke); van Loveren, Henk; Tervaert, Jan Willem Cohen

2012-01-01

Objective To assess whether there is an association between statin use and the occurrence of polymyalgia rheumatic (PMR) in the spontaneous reporting database of the World Health Organisation (WHO). Methods We conducted a case/non-case study based on individual case safety reports (ICSR) in the WHO global ICSR database (VigiBase). Case reports containing the adverse event term polymyalgia rheumatica (WHOART or MedDRA Preferred Term) were defined as cases. Non-cases were all case reports containing other adverse event terms. Each case was matched to five non-cases by age, gender, and time of reporting. Case reports regarding a statin as suspected or concomitant drug were identified using the Anatomical Therapeutic Chemical (ATC) classification. Multivariate logistic regression was used to calculate reporting odds ratios (RORs) with 95% confidence intervals (CI). Results We identified 327 reports of PMR as cases and 1635 reports of other ADRs as non-cases. Among cases, statins were more frequently reported as suspected agent (29.4%) compared to non-cases (2.9%). After adjustment for several covariates, statins were significantly associated with reports of PMR (ROR 14.21; 95% CI 9.89–20.85). Conclusion The results of this study lends support to previous anecdotal case reports in the literature suggesting that the use of a statin may be associated with the occurrence of PMR. Further studies are needed to study the strength of the association in more detail and to elucidate the underlying mechanism. PMID:22844450

A Unified and Coherent Land Surface Emissivity Earth System Data Record

NASA Astrophysics Data System (ADS)

Knuteson, R. O.; Borbas, E. E.; Hulley, G. C.; Hook, S. J.; Anderson, M. C.; Pinker, R. T.; Hain, C.; Guillevic, P. C.

2014-12-01

Land Surface Temperature and Emissivity (LST&E) data are essential for a wide variety of studies from calculating the evapo-transpiration of plant canopies to retrieving atmospheric water vapor. LST&E products are generated from data acquired by sensors in low Earth orbit (LEO) and by sensors in geostationary Earth orbit (GEO). Although these products represent the same measure, they are produced at different spatial, spectral and temporal resolutions using different algorithms. The different approaches used to retrieve the temperatures and emissivities result in discrepancies and inconsistencies between the different products. NASA has identified a major need to develop long-term, consistent, and calibrated data and products that are valid across multiple missions and satellite sensors. This poster will introduce the land surface emissivity product of the NASA MEASUREs project called A Unified and Coherent Land Surface Temperature and Emissivity (LST&E) Earth System Data Record (ESDR). To develop a unified high spectral resolution emissivity database, the MODIS baseline-fit emissivity database (MODBF) produced at the University of Wisconsin-Madison and the ASTER Global Emissivity Database (ASTER GED) produced at JPL will be merged. The unified Emissivity ESDR will be produced globally at 5km in mean monthly time-steps and for 12 bands from 3.6-14.3 micron and extended to 417 bands using a PC regression approach. The poster will introduce this data product. LST&E is a critical ESDR for a wide variety of studies in particular ecosystem and climate modeling.

In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB

PubMed Central

2013-01-01

Background Though India has sequenced water buffalo genome but its draft assembly is based on cattle genome BTau 4.0, thus de novo chromosome wise assembly is a major pending issue for global community. The existing radiation hybrid of buffalo and these reported STR can be used further in final gap plugging and “finishing” expected in de novo genome assembly. QTL and gene mapping needs mining of putative STR from buffalo genome at equal interval on each and every chromosome. Such markers have potential role in improvement of desirable characteristics, such as high milk yields, resistance to diseases, high growth rate. The STR mining from whole genome and development of user friendly database is yet to be done to reap the benefit of whole genome sequence. Description By in silico microsatellite mining of whole genome, we have developed first STR database of water buffalo, BuffSatDb (Buffalo MicroSatellite Database (http://cabindb.iasri.res.in/buffsatdb/) which is a web based relational database of 910529 microsatellite markers, developed using PHP and MySQL database. Microsatellite markers have been generated using MIcroSAtellite tool. It is simple and systematic web based search for customised retrieval of chromosome wise and genome-wide microsatellites. Search has been enabled based on chromosomes, motif type (mono-hexa), repeat motif and repeat kind (simple and composite). The search may be customised by limiting location of STR on chromosome as well as number of markers in that range. This is a novel approach and not been implemented in any of the existing marker database. This database has been further appended with Primer3 for primer designing of the selected markers enabling researcher to select markers of choice at desired interval over the chromosome. The unique add-on of degenerate bases further helps in resolving presence of degenerate bases in current buffalo assembly. Conclusion Being first buffalo STR database in the world , this would not only pave the way in resolving current assembly problem but shall be of immense use for global community in QTL/gene mapping critically required to increase knowledge in the endeavour to increase buffalo productivity, especially for third world country where rural economy is significantly dependent on buffalo productivity. PMID:23336431

In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB.

PubMed

Sarika; Arora, Vasu; Iquebal, Mir Asif; Rai, Anil; Kumar, Dinesh

2013-01-19

Though India has sequenced water buffalo genome but its draft assembly is based on cattle genome BTau 4.0, thus de novo chromosome wise assembly is a major pending issue for global community. The existing radiation hybrid of buffalo and these reported STR can be used further in final gap plugging and "finishing" expected in de novo genome assembly. QTL and gene mapping needs mining of putative STR from buffalo genome at equal interval on each and every chromosome. Such markers have potential role in improvement of desirable characteristics, such as high milk yields, resistance to diseases, high growth rate. The STR mining from whole genome and development of user friendly database is yet to be done to reap the benefit of whole genome sequence. By in silico microsatellite mining of whole genome, we have developed first STR database of water buffalo, BuffSatDb (Buffalo MicroSatellite Database (http://cabindb.iasri.res.in/buffsatdb/) which is a web based relational database of 910529 microsatellite markers, developed using PHP and MySQL database. Microsatellite markers have been generated using MIcroSAtellite tool. It is simple and systematic web based search for customised retrieval of chromosome wise and genome-wide microsatellites. Search has been enabled based on chromosomes, motif type (mono-hexa), repeat motif and repeat kind (simple and composite). The search may be customised by limiting location of STR on chromosome as well as number of markers in that range. This is a novel approach and not been implemented in any of the existing marker database. This database has been further appended with Primer3 for primer designing of the selected markers enabling researcher to select markers of choice at desired interval over the chromosome. The unique add-on of degenerate bases further helps in resolving presence of degenerate bases in current buffalo assembly. Being first buffalo STR database in the world , this would not only pave the way in resolving current assembly problem but shall be of immense use for global community in QTL/gene mapping critically required to increase knowledge in the endeavour to increase buffalo productivity, especially for third world country where rural economy is significantly dependent on buffalo productivity.

The World Database for Pediatric and Congenital Heart Surgery: The Dawn of a New Era of Global Communication and Quality Improvement in Congenital Heart Disease.

PubMed

St Louis, James D; Kurosawa, Hiromi; Jonas, Richard A; Sandoval, Nestor; Cervantes, Jorge; Tchervenkov, Christo I; Jacobs, Jeffery P; Sakamoto, Kisaburo; Stellin, Giovanni; Kirklin, James K

2017-09-01

The World Society for Pediatric and Congenital Heart Surgery was founded with the mission to "promote the highest quality comprehensive cardiac care to all patients with congenital heart disease, from the fetus to the adult, regardless of the patient's economic means, with an emphasis on excellence in teaching, research, and community service." Early on, the Society's members realized that a crucial step in meeting this goal was to establish a global database that would collect vital information, allowing cardiac surgical centers worldwide to benchmark their outcomes and improve the quality of congenital heart disease care. With tireless efforts from all corners of the globe and utilizing the vast experience and invaluable input of multiple international experts, such a platform of global information exchange was created: The World Database for Pediatric and Congenital Heart Disease went live on January 1, 2017. This database has been thoughtfully designed to produce meaningful performance and quality analyses of surgical outcomes extending beyond immediate hospital survival, allowing capture of important morbidities and mortalities for up to 1 year postoperatively. In order to advance the societal mission, this quality improvement program is available free of charge to WSPCHS members. In establishing the World Database, the Society has taken an essential step to further the process of global improvement in care for children with congenital heart disease.

The MAREDAT Global Database of High Performance Liquid Chromatography Marine Pigment Measurements

NASA Technical Reports Server (NTRS)

Peloquin, J.; Swan, C.; Gruber, N.; Vogt, M.; Claustre, H.; Ras, J.; Uitz, J.; Barlow, R.; Behrenfeld, M.; Bidigare, R.;

Rapid HIS, RIS, PACS Integration Using Graphical CASE Tools

NASA Astrophysics Data System (ADS)

Taira, Ricky K.; Breant, Claudine M.; Stepczyk, Frank M.; Kho, Hwa T.; Valentino, Daniel J.; Tashima, Gregory H.; Materna, Anthony T.

1994-05-01

We describe the clinical requirements of the integrated federation of databases and present our client-mediator-server design. The main body of the paper describes five important aspects of integrating information systems: (1) global schema design, (2) establishing sessions with remote database servers, (3) development of schema translators, (4) integration of global system triggers, and (5) development of job workflow scripts.

Developing an A Priori Database for Passive Microwave Snow Water Retrievals Over Ocean

NASA Astrophysics Data System (ADS)

Yin, Mengtao; Liu, Guosheng

2017-12-01

A physically optimized a priori database is developed for Global Precipitation Measurement Microwave Imager (GMI) snow water retrievals over ocean. The initial snow water content profiles are derived from CloudSat Cloud Profiling Radar (CPR) measurements. A radiative transfer model in which the single-scattering properties of nonspherical snowflakes are based on the discrete dipole approximate results is employed to simulate brightness temperatures and their gradients. Snow water content profiles are then optimized through a one-dimensional variational (1D-Var) method. The standard deviations of the difference between observed and simulated brightness temperatures are in a similar magnitude to the observation errors defined for observation error covariance matrix after the 1D-Var optimization, indicating that this variational method is successful. This optimized database is applied in a Bayesian retrieval snow water algorithm. The retrieval results indicated that the 1D-Var approach has a positive impact on the GMI retrieved snow water content profiles by improving the physical consistency between snow water content profiles and observed brightness temperatures. Global distribution of snow water contents retrieved from the a priori database is compared with CloudSat CPR estimates. Results showed that the two estimates have a similar pattern of global distribution, and the difference of their global means is small. In addition, we investigate the impact of using physical parameters to subset the database on snow water retrievals. It is shown that using total precipitable water to subset the database with 1D-Var optimization is beneficial for snow water retrievals.

Trends in maar crater size and shape using the global Maar Volcano Location and Shape (MaarVLS) database

NASA Astrophysics Data System (ADS)

Graettinger, A. H.

2018-05-01

A maar crater is the top of a much larger subsurface diatreme structure produced by phreatomagmatic explosions and the size and shape of the crater reflects the growth history of that structure during an eruption. Recent experimental and geophysical research has shown that crater complexity can reflect subsurface complexity. Morphometry provides a means of characterizing a global population of maar craters in order to establish the typical size and shape of features. A global database of Quaternary maar crater planform morphometry indicates that maar craters are typically not circular and frequently have compound shapes resembling overlapping circles. Maar craters occur in volcanic fields that contain both small volume and complex volcanoes. The global perspective provided by the database shows that maars are common in many volcanic and tectonic settings producing a similar diversity of size and shape within and between volcanic fields. A few exceptional populations of maars were revealed by the database, highlighting directions of future research to improve our understanding on the geometry and spacing of subsurface explosions that produce maars. These outlying populations, such as anomalously large craters (>3000 m), chains of maars, and volcanic fields composed of mostly maar craters each represent a small portion of the database, but provide opportunities to reinvestigate fundamental questions on maar formation. Maar crater morphometry can be integrated with structural, hydrological studies to investigate lateral migration of phreatomagmatic explosion location in the subsurface. A comprehensive database of intact maar morphometry is also beneficial for the hunt for maar-diatremes on other planets.

International Database of Volcanic Ash Impacts

NASA Astrophysics Data System (ADS)

Wallace, K.; Cameron, C.; Wilson, T. M.; Jenkins, S.; Brown, S.; Leonard, G.; Deligne, N.; Stewart, C.

2015-12-01

Volcanic ash creates extensive impacts to people and property, yet we lack a global ash impacts catalog to organize, distribute, and archive this important information. Critical impact information is often stored in ephemeral news articles or other isolated resources, which cannot be queried or located easily. A global ash impacts database would improve 1) warning messages, 2) public and lifeline emergency preparation, and 3) eruption response and recovery. Ashfall can have varying consequences, such as disabling critical lifeline infrastructure (e.g. electrical generation and transmission, water supplies, telecommunications, aircraft and airports) or merely creating limited and expensive inconvenience to local communities. Impacts to the aviation sector can be a far-reaching global issue. The international volcanic ash impacts community formed a committee to develop a database to catalog the impacts of volcanic ash. We identify three user populations for this database: 1) research teams, who would use the database to assist in systematic collection, recording, and storage of ash impact data, and to prioritize impact assessment trips and lab experiments 2) volcanic risk assessment scientists who rely on impact data for assessments (especially vulnerability/fragility assessments); a complete dataset would have utility for global, regional, national and local scale risk assessments, and 3) citizen science volcanic hazard reporting. Publication of an international ash impacts database will encourage standardization and development of best practices for collecting and reporting impact information. Data entered will be highly categorized, searchable, and open source. Systematic cataloging of impact data will allow users to query the data and extract valuable information to aid in the development of improved emergency preparedness, response and recovery measures.

The Microbial Rosetta Stone Database: A compilation of global and emerging infectious microorganisms and bioterrorist threat agents

PubMed Central

Ecker, David J; Sampath, Rangarajan; Willett, Paul; Wyatt, Jacqueline R; Samant, Vivek; Massire, Christian; Hall, Thomas A; Hari, Kumar; McNeil, John A; Büchen-Osmond, Cornelia; Budowle, Bruce

2005-01-01

Background Thousands of different microorganisms affect the health, safety, and economic stability of populations. Many different medical and governmental organizations have created lists of the pathogenic microorganisms relevant to their missions; however, the nomenclature for biological agents on these lists and pathogens described in the literature is inexact. This ambiguity can be a significant block to effective communication among the diverse communities that must deal with epidemics or bioterrorist attacks. Results We have developed a database known as the Microbial Rosetta Stone. The database relates microorganism names, taxonomic classifications, diseases, specific detection and treatment protocols, and relevant literature. The database structure facilitates linkage to public genomic databases. This paper focuses on the information in the database for pathogens that impact global public health, emerging infectious organisms, and bioterrorist threat agents. Conclusion The Microbial Rosetta Stone is available at . The database provides public access to up-to-date taxonomic classifications of organisms that cause human diseases, improves the consistency of nomenclature in disease reporting, and provides useful links between different public genomic and public health databases. PMID:15850481

Global Health Observatory (GHO)

MedlinePlus

... monitoring partnerships, including the Countdown to 2030 and academic institutions. – Access the portal Global Observatory on Health ... global situation and trends highlights, using core indicators, database views, major publications and links to relevant web ...

Fossil-Fuel C02 Emissions Database and Exploration System

NASA Astrophysics Data System (ADS)

Krassovski, M.; Boden, T.

2012-04-01

Fossil-Fuel C02 Emissions Database and Exploration System Misha Krassovski and Tom Boden Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory The Carbon Dioxide Information Analysis Center (CDIAC) at Oak Ridge National Laboratory (ORNL) quantifies the release of carbon from fossil-fuel use and cement production each year at global, regional, and national spatial scales. These estimates are vital to climate change research given the strong evidence suggesting fossil-fuel emissions are responsible for unprecedented levels of carbon dioxide (CO2) in the atmosphere. The CDIAC fossil-fuel emissions time series are based largely on annual energy statistics published for all nations by the United Nations (UN). Publications containing historical energy statistics make it possible to estimate fossil-fuel CO2 emissions back to 1751 before the Industrial Revolution. From these core fossil-fuel CO2 emission time series, CDIAC has developed a number of additional data products to satisfy modeling needs and to address other questions aimed at improving our understanding of the global carbon cycle budget. For example, CDIAC also produces a time series of gridded fossil-fuel CO2 emission estimates and isotopic (e.g., C13) emissions estimates. The gridded data are generated using the methodology described in Andres et al. (2011) and provide monthly and annual estimates for 1751-2008 at 1° latitude by 1° longitude resolution. These gridded emission estimates are being used in the latest IPCC Scientific Assessment (AR4). Isotopic estimates are possible thanks to detailed information for individual nations regarding the carbon content of select fuels (e.g., the carbon signature of natural gas from Russia). CDIAC has recently developed a relational database to house these baseline emissions estimates and associated derived products and a web-based interface to help users worldwide query these data holdings. Users can identify, explore and download desired CDIAC fossil-fuel CO2 emissions data. This presentation introduces the architecture and design of the new relational database and web interface, summarizes the present state and functionality of the Fossil-Fuel CO2 Emissions Database and Exploration System, and highlights future plans for expansion of the relational database and interface.

Global climate change: Social and economic research issues

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rice, M.; Snow, J.; Jacobson, H.

This workshop was designed to bring together a group of scholars, primarily from the social sciences, to explore research that might help in dealing with global climate change. To illustrate the state of present understanding, it seemed useful to focus this workshop on three broad questions that are involved in coping with climate change. These are: (1) How can the anticipated economic costs and benefits of climate change be identified; (2) How can the impacts of climate change be adjusted to or avoided; (3) What previously studied models are available for institutional management of the global environment? The resulting discussionsmore » may (1) identify worthwhile avenues for further social science research, (2) help develop feedback for natural scientists about research information from this domain needed by social scientists, and (3) provide policymakers with the sort of relevant research information from the social science community that is currently available. Individual papers are processed separately for the database.« less

A Global Geospatial Database of 5000+ Historic Flood Event Extents

NASA Astrophysics Data System (ADS)

Tellman, B.; Sullivan, J.; Doyle, C.; Kettner, A.; Brakenridge, G. R.; Erickson, T.; Slayback, D. A.

2017-12-01

A key dataset that is missing for global flood model validation and understanding historic spatial flood vulnerability is a global historical geo-database of flood event extents. Decades of earth observing satellites and cloud computing now make it possible to not only detect floods in near real time, but to run these water detection algorithms back in time to capture the spatial extent of large numbers of specific events. This talk will show results from the largest global historical flood database developed to date. We use the Dartmouth Flood Observatory flood catalogue to map over 5000 floods (from 1985-2017) using MODIS, Landsat, and Sentinel-1 Satellites. All events are available for public download via the Earth Engine Catalogue and via a website that allows the user to query floods by area or date, assess population exposure trends over time, and download flood extents in geospatial format.In this talk, we will highlight major trends in global flood exposure per continent, land use type, and eco-region. We will also make suggestions how to use this dataset in conjunction with other global sets to i) validate global flood models, ii) assess the potential role of climatic change in flood exposure iii) understand how urbanization and other land change processes may influence spatial flood exposure iv) assess how innovative flood interventions (e.g. wetland restoration) influence flood patterns v) control for event magnitude to assess the role of social vulnerability and damage assessment vi) aid in rapid probabilistic risk assessment to enable microinsurance markets. Authors on this paper are already using the database for the later three applications and will show examples of wetland intervention analysis in Argentina, social vulnerability analysis in the USA, and micro insurance in India.

Remote sensing and GIS technology in the Global Land Ice Measurements from Space (GLIMS) Project

USGS Publications Warehouse

Raup, B.; Kääb, Andreas; Kargel, J.S.; Bishop, M.P.; Hamilton, G.; Lee, E.; Paul, F.; Rau, F.; Soltesz, D.; Khalsa, S.J.S.; Beedle, M.; Helm, C.

2007-01-01

Global Land Ice Measurements from Space (GLIMS) is an international consortium established to acquire satellite images of the world's glaciers, analyze them for glacier extent and changes, and to assess these change data in terms of forcings. The consortium is organized into a system of Regional Centers, each of which is responsible for glaciers in their region of expertise. Specialized needs for mapping glaciers in a distributed analysis environment require considerable work developing software tools: terrain classification emphasizing snow, ice, water, and admixtures of ice with rock debris; change detection and analysis; visualization of images and derived data; interpretation and archival of derived data; and analysis to ensure consistency of results from different Regional Centers. A global glacier database has been designed and implemented at the National Snow and Ice Data Center (Boulder, CO); parameters have been expanded from those of the World Glacier Inventory (WGI), and the database has been structured to be compatible with (and to incorporate) WGI data. The project as a whole was originated, and has been coordinated by, the US Geological Survey (Flagstaff, AZ), which has also led the development of an interactive tool for automated analysis and manual editing of glacier images and derived data (GLIMSView). This article addresses remote sensing and Geographic Information Science techniques developed within the framework of GLIMS in order to fulfill the goals of this distributed project. Sample applications illustrating the developed techniques are also shown. ?? 2006 Elsevier Ltd. All rights reserved.

Comparison of biomass burning inventories processed by GEOS-Chem and ACCESS2.0 with total column and satellite data in Australia.

NASA Astrophysics Data System (ADS)

Desservettaz, M.; Fisher, J. A.; Jones, N. B.; Bukosa, B.; Greenslade, J.; Luhar, A.; Woodhouse, M.; Griffith, D. W. T.; Velazco, V. A.

2016-12-01

Australia contributes approximately 6% of global biomass burning CO2 emissions, mostly from savanna type fires. This estimate comes from biomass burning inventories that use emission factors derived from field campaigns performed outside Australia. The relevance of these emission factors to the Australian environment has not previously been evaluated and therefore needs to be tested. Here we compare predictions from the chemical transport model GEOS-Chem and the global chemistry-climate model ACCESS-UKCA run using different biomass burning inventories to total column measurements of CO, C2H6 and HCHO, in order to identify the most representative inventory for Australian fire emissions. The measurements come from the Network for Detection of Atmospheric Composition Change (NDACC) and Total Carbon Column Observing Network (TCCON) solar remote sensing Fourier transform spectrometers and satellite measurements from IASI and OMI over Australia. We evaluate three inventories: the Global Fire Emission Database version 4 - GFED4 (Giglio et al. 2013), the Fire Inventory from NCAR - FINN (Wiedinmyer et al. 2011), the Quick Fire Emission Database - QFED from NASA and the MACCity emission inventory (from the MACC/CityZEN EU projects; Angiola et al. 2010). From this evaluation we aim to give recommendations for the most appropriate inventory to use for different Australian environments. We also plan to examine any significant concentration variations arising from the differences between the two model setups.

'BRICS without straw'? A systematic literature review of newly emerging economies' influence in global health.

PubMed

Harmer, Andrew; Xiao, Yina; Missoni, Eduardo; Tediosi, Fabrizio

2013-04-15

Since 2010, five newly emerging economies collectively known as 'BRICS' (Brazil, India, Russia, China and South Africa) have caught the imagination, and scholarly attention, of political scientists, economists and development specialists. The prospect of a unified geopolitical bloc, consciously seeking to re-frame international (and global) health development with a new set of ideas and values, has also, if belatedly, begun to attract the attention of the global health community. But what influence, if any, do the BRICS wield in global health, and, if they do wield influence, how has that influence been conceptualized and recorded in the literature? We conducted a systematic literature review in (March-December 2012) of documents retrieved from the databases EMBASE, PubMed/Medline, Global Health, and Google Scholar, and the websites of relevant international organisations, research institutions and philanthropic organisations. The results were synthesised using a framework of influence developed for the review from the political science literature. Our initial search of databases and websites yielded 887 documents. Exclusion criteria narrowed the number of documents to 71 journal articles and 23 reports. Two researchers using an agreed set of inclusion criteria independently screened the 94 documents, leaving just 7 documents. We found just one document that provided sustained analysis of the BRICS' collective influence; the overwhelming tendency was to describe individual BRICS countries influence. Although influence was predominantly framed by BRICS countries' material capability, there were examples of institutional and ideational influence - particularly from Brazil. Individual BRICS countries were primarily 'opportunity seekers' and region mobilisers but with potential to become 'issue leaders' and region organisers. Though small in number, the written output on BRICS influence in global health has increased significantly since a similar review conducted in 2010 found just one study. Whilst it may still be 'early days' for newly-emerging economies influence in global health to have matured, we argue that there is scope to further develop the concept of influence in global health, but also to better understand the ontology of groups of countries such as BRICS. The BRICS have made a number of important commitments towards reforming global health, but if they are to be more than a memorable acronym they need to start putting those collective commitments into action. Keywords BRICS, global health, influence, newly emerging economies, Brazil, Russia, India, China, South Africa.

Mars global digital dune database: MC-30

USGS Publications Warehouse

Hayward, R.K.; Fenton, L.K.; Titus, T.N.; Colaprete, A.; Christensen, P.R.

2012-01-01

The Mars Global Digital Dune Database (MGD3) provides data and describes the methodology used in creating the global database of moderate- to large-size dune fields on Mars. The database is being released in a series of U.S. Geological Survey Open-File Reports. The first report (Hayward and others, 2007) included dune fields from lat 65° N. to 65° S. (http://pubs.usgs.gov/of/2007/1158/). The second report (Hayward and others, 2010) included dune fields from lat 60° N. to 90° N. (http://pubs.usgs.gov/of/2010/1170/). This report encompasses ~75,000 km2 of mapped dune fields from lat 60° to 90° S. The dune fields included in this global database were initially located using Mars Odyssey Thermal Emission Imaging System (THEMIS) Infrared (IR) images. In the previous two reports, some dune fields may have been unintentionally excluded for two reasons: (1) incomplete THEMIS IR (daytime) coverage may have caused us to exclude some moderate- to large-size dune fields or (2) resolution of THEMIS IR coverage (100 m/pixel) certainly caused us to exclude smaller dune fields. In this report, mapping is more complete. The Arizona State University THEMIS daytime IR mosaic provided complete IR coverage, and it is unlikely that we missed any large dune fields in the South Pole (SP) region. In addition, the increased availability of higher resolution images resulted in the inclusion of more small (~1 km2) sand dune fields and sand patches. To maintain consistency with the previous releases, we have identified the sand features that would not have been included in earlier releases. While the moderate to large dune fields in MGD3 are likely to constitute the largest compilation of sediment on the planet, we acknowledge that our database excludes numerous small dune fields and some moderate to large dune fields as well. Please note that the absence of mapped dune fields does not mean that dune fields do not exist and is not intended to imply a lack of saltating sand in other areas. Where availability and quality of THEMIS visible (VIS), Mars Orbiter Camera (MOC) narrow angle, Mars Express High Resolution Stereo Camera, or Mars Reconnaissance Orbiter Context Camera and High Resolution Imaging Science Experiment images allowed, we classified dunes and included some dune slipface measurements, which were derived from gross dune morphology and represent the approximate prevailing wind direction at the last time of significant dune modification. It was beyond the scope of this report to look at the detail needed to discern subtle dune modification. It was also beyond the scope of this report to measure all slipfaces. We attempted to include enough slipface measurements to represent the general circulation (as implied by gross dune morphology) and to give a sense of the complex nature of aeolian activity on Mars. The absence of slipface measurements in a given direction should not be taken as evidence that winds in that direction did not occur. When a dune field was located within a crater, the azimuth from crater centroid to dune field centroid was calculated, as another possible indicator of wind direction. Output from a general circulation model is also included. In addition to polygons locating dune fields, the database includes ~700 of the THEMIS VIS and MOC images that were used to build the database.

Gaps in knowledge and data driving uncertainty in models of photosynthesis.

PubMed

Dietze, Michael C

2014-02-01

Regional and global models of the terrestrial biosphere depend critically on models of photosynthesis when predicting impacts of global change. This paper focuses on identifying the primary data needs of these models, what scales drive uncertainty, and how to improve measurements. Overall, there is a need for an open, cross-discipline database on leaf-level photosynthesis in general, and response curves in particular. The parameters in photosynthetic models are not constant through time, space, or canopy position but there is a need for a better understanding of whether relationships with drivers, such as leaf nitrogen, are themselves scale dependent. Across time scales, as ecosystem models become more sophisticated in their representations of succession they needs to be able to approximate sunfleck responses to capture understory growth and survival. At both high and low latitudes, photosynthetic data are inadequate in general and there is a particular need to better understand thermal acclimation. Simple models of acclimation suggest that shifts in optimal temperature are important. However, there is little advantage to synoptic-scale responses and circadian rhythms may be more beneficial than acclimation over shorter timescales. At high latitudes, there is a need for a better understanding of low-temperature photosynthetic limits, while at low latitudes the need is for a better understanding of phosphorus limitations on photosynthesis. In terms of sampling, measuring multivariate photosynthetic response surfaces are potentially more efficient and more accurate than traditional univariate response curves. Finally, there is a need for greater community involvement in model validation and model-data synthesis.

Integrated Electronic Health Record Database Management System: A Proposal.

PubMed

Schiza, Eirini C; Panos, George; David, Christiana; Petkov, Nicolai; Schizas, Christos N

2015-01-01

eHealth has attained significant importance as a new mechanism for health management and medical practice. However, the technological growth of eHealth is still limited by technical expertise needed to develop appropriate products. Researchers are constantly in a process of developing and testing new software for building and handling Clinical Medical Records, being renamed to Electronic Health Record (EHR) systems; EHRs take full advantage of the technological developments and at the same time provide increased diagnostic and treatment capabilities to doctors. A step to be considered for facilitating this aim is to involve more actively the doctor in building the fundamental steps for creating the EHR system and database. A global clinical patient record database management system can be electronically created by simulating real life medical practice health record taking and utilizing, analyzing the recorded parameters. This proposed approach demonstrates the effective implementation of a universal classic medical record in electronic form, a procedure by which, clinicians are led to utilize algorithms and intelligent systems for their differential diagnosis, final diagnosis and treatment strategies.

ERAIZDA: a model for holistic annotation of animal infectious and zoonotic diseases.

PubMed

Buza, Teresia M; Jack, Sherman W; Kirunda, Halid; Khaitsa, Margaret L; Lawrence, Mark L; Pruett, Stephen; Peterson, Daniel G

2015-01-01

There is an urgent need for a unified resource that integrates trans-disciplinary annotations of emerging and reemerging animal infectious and zoonotic diseases. Such data integration will provide wonderful opportunity for epidemiologists, researchers and health policy makers to make data-driven decisions designed to improve animal health. Integrating emerging and reemerging animal infectious and zoonotic disease data from a large variety of sources into a unified open-access resource provides more plausible arguments to achieve better understanding of infectious and zoonotic diseases. We have developed a model for interlinking annotations of these diseases. These diseases are of particular interest because of the threats they pose to animal health, human health and global health security. We demonstrated the application of this model using brucellosis, an infectious and zoonotic disease. Preliminary annotations were deposited into VetBioBase database (http://vetbiobase.igbb.msstate.edu). This database is associated with user-friendly tools to facilitate searching, retrieving and downloading of disease-related information. Database URL: http://vetbiobase.igbb.msstate.edu. © The Author(s) 2015. Published by Oxford University Press.

An empirical assessment of taxic paleobiology.

PubMed

Adrain, J M; Westrop, S R

2000-07-07

The analysis of major changes in faunal diversity through time is a central theme of analytical paleobiology. The most important sources of data are literature-based compilations of stratigraphic ranges of fossil taxa. The levels of error in these compilations and the possible effects of such error have often been discussed but never directly assessed. We compared our comprehensive database of trilobites to the equivalent portion of J. J. Sepkoski Jr.'s widely used global genus database. More than 70% of entries in the global database are inaccurate; however, as predicted, the error is randomly distributed and does not introduce bias.

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources.

PubMed

Lim, Jeongheui; Kim, Sang-Yoon; Kim, Sungmin; Eo, Hae-Seok; Kim, Chang-Bae; Paek, Woon Kee; Kim, Won; Bhak, Jong

2009-12-03

DNA barcoding provides a rapid, accurate, and standardized method for species-level identification using short DNA sequences. Such a standardized identification method is useful for mapping all the species on Earth, particularly when DNA sequencing technology is cheaply available. There are many nations in Asia with many biodiversity resources that need to be mapped and registered in databases. We have built a general DNA barcode data processing system, BioBarcode, with open source software - which is a general purpose database and server. It uses mySQL RDBMS 5.0, BLAST2, and Apache httpd server. An exemplary database of BioBarcode has around 11,300 specimen entries (including GenBank data) and registers the biological species to map their genetic relationships. The BioBarcode database contains a chromatogram viewer which improves the performance in DNA sequence analyses. Asia has a very high degree of biodiversity and the BioBarcode database server system aims to provide an efficient bioinformatics protocol that can be freely used by Asian researchers and research organizations interested in DNA barcoding. The BioBarcode promotes the rapid acquisition of biological species DNA sequence data that meet global standards by providing specialized services, and provides useful tools that will make barcoding cheaper and faster in the biodiversity community such as standardization, depository, management, and analysis of DNA barcode data. The system can be downloaded upon request, and an exemplary server has been constructed with which to build an Asian biodiversity system http://www.asianbarcode.org.

Global and regional ecosystem modeling: comparison of model outputs and field measurements

NASA Astrophysics Data System (ADS)

Olson, R. J.; Hibbard, K.

2003-04-01

The Ecosystem Model-Data Intercomparison (EMDI) Workshops provide a venue for global ecosystem modeling groups to compare model outputs against measurements of net primary productivity (NPP). The objective of EMDI Workshops is to evaluate model performance relative to observations in order to improve confidence in global model projections terrestrial carbon cycling. The questions addressed by EMDI include: How does the simulated NPP compare with the field data across biome and environmental gradients? How sensitive are models to site-specific climate? Does additional mechanistic detail in models result in a better match with field measurements? How useful are the measures of NPP for evaluating model predictions? How well do models represent regional patterns of NPP? Initial EMDI results showed general agreement between model predictions and field measurements but with obvious differences that indicated areas for potential data and model improvement. The effort was built on the development and compilation of complete and consistent databases for model initialization and comparison. Database development improves the data as well as models; however, there is a need to incorporate additional observations and model outputs (LAI, hydrology, etc.) for comprehensive analyses of biogeochemical processes and their relationships to ecosystem structure and function. EMDI initialization and NPP data sets are available from the Oak Ridge National Laboratory Distributed Active Archive Center http://www.daac.ornl.gov/. Acknowledgements: This work was partially supported by the International Geosphere-Biosphere Programme - Data and Information System (IGBP-DIS); the IGBP-Global Analysis, Interpretation and Modelling Task Force (GAIM); the National Center for Ecological Analysis and Synthesis (NCEAS); and the National Aeronautics and Space Administration (NASA) Terrestrial Ecosystem Program. Oak Ridge National Laboratory is managed by UT-Battelle LLC for the U.S. Department of Energy under contract DE-AC05-00OR22725

Clinical Outcomes in Duchenne Muscular Dystrophy: A Study of 5345 Patients from the TREAT-NMD DMD Global Database

PubMed Central

Koeks, Zaïda; Bladen, Catherine L.; Salgado, David; van Zwet, Erik; Pogoryelova, Oksana; McMacken, Grace; Monges, Soledad; Foncuberta, Maria E.; Kekou, Kyriaki; Kosma, Konstantina; Dawkins, Hugh; Lamont, Leanne; Bellgard, Matthew I.; Roy, Anna J.; Chamova, Teodora; Guergueltcheva, Velina; Chan, Sophelia; Korngut, Lawrence; Campbell, Craig; Dai, Yi; Wang, Jen; Barišić, Nina; Brabec, Petr; Lähdetie, Jaana; Walter, Maggie C.; Schreiber-Katz, Olivia; Karcagi, Veronika; Garami, Marta; Herczegfalvi, Agnes; Viswanathan, Venkatarman; Bayat, Farhad; Buccella, Filippo; Ferlini, Alessandra; Kimura, En; van den Bergen, Janneke C.; Rodrigues, Miriam; Roxburgh, Richard; Lusakowska, Anna; Kostera-Pruszczyk, Anna; Santos, Rosário; Neagu, Elena; Artemieva, Svetlana; Rasic, Vedrana Milic; Vojinovic, Dina; Posada, Manuel; Bloetzer, Clemens; Klein, Andrea; Díaz-Manera, Jordi; Gallardo, Eduard; Karaduman, A. Ayşe; Oznur, Tunca; Topaloğlu, Haluk; El Sherif, Rasha; Stringer, Angela; Shatillo, Andriy V.; Martin, Ann S.; Peay, Holly L.; Kirschner, Jan; Flanigan, Kevin M.; Straub, Volker; Bushby, Kate; Béroud, Christophe; Verschuuren, Jan J.; Lochmüller, Hanns

2017-01-01

Background: Recent short-term clinical trials in patients with Duchenne Muscular Dystrophy (DMD) have indicated greater disease variability in terms of progression than expected. In addition, as average life-expectancy increases, reliable data is required on clinical progression in the older DMD population. Objective: To determine the effects of corticosteroids on major clinical outcomes of DMD in a large multinational cohort of genetically confirmed DMD patients. Methods: In this cross-sectional study we analysed clinical data from 5345 genetically confirmed DMD patients from 31 countries held within the TREAT-NMD global DMD database. For analysis patients were categorised by corticosteroid background and further stratified by age. Results: Loss of ambulation in non-steroid treated patients was 10 years and in corticosteroid treated patients 13 years old (p = 0.0001). Corticosteroid treated patients were less likely to need scoliosis surgery (p < 0.001) or ventilatory support (p < 0.001) and there was a mild cardioprotective effect of corticosteroids in the patient population aged 20 years and older (p = 0.0035). Patients with a single deletion of exon 45 showed an increased survival in contrast to other single exon deletions. Conclusions: This study provides data on clinical outcomes of DMD across many healthcare settings and including a sizeable cohort of older patients. Our data confirm the benefits of corticosteroid treatment on ambulation, need for scoliosis surgery, ventilation and, to a lesser extent, cardiomyopathy. This study underlines the importance of data collection via patient registries and the critical role of multi-centre collaboration in the rare disease field. PMID:29125504

Clinical Outcomes in Duchenne Muscular Dystrophy: A Study of 5345 Patients from the TREAT-NMD DMD Global Database.

PubMed

Koeks, Zaïda; Bladen, Catherine L; Salgado, David; van Zwet, Erik; Pogoryelova, Oksana; McMacken, Grace; Monges, Soledad; Foncuberta, Maria E; Kekou, Kyriaki; Kosma, Konstantina; Dawkins, Hugh; Lamont, Leanne; Bellgard, Matthew I; Roy, Anna J; Chamova, Teodora; Guergueltcheva, Velina; Chan, Sophelia; Korngut, Lawrence; Campbell, Craig; Dai, Yi; Wang, Jen; Barišić, Nina; Brabec, Petr; Lähdetie, Jaana; Walter, Maggie C; Schreiber-Katz, Olivia; Karcagi, Veronika; Garami, Marta; Herczegfalvi, Agnes; Viswanathan, Venkatarman; Bayat, Farhad; Buccella, Filippo; Ferlini, Alessandra; Kimura, En; van den Bergen, Janneke C; Rodrigues, Miriam; Roxburgh, Richard; Lusakowska, Anna; Kostera-Pruszczyk, Anna; Santos, Rosário; Neagu, Elena; Artemieva, Svetlana; Rasic, Vedrana Milic; Vojinovic, Dina; Posada, Manuel; Bloetzer, Clemens; Klein, Andrea; Díaz-Manera, Jordi; Gallardo, Eduard; Karaduman, A Ayşe; Oznur, Tunca; Topaloğlu, Haluk; El Sherif, Rasha; Stringer, Angela; Shatillo, Andriy V; Martin, Ann S; Peay, Holly L; Kirschner, Jan; Flanigan, Kevin M; Straub, Volker; Bushby, Kate; Béroud, Christophe; Verschuuren, Jan J; Lochmüller, Hanns

2017-01-01

Recent short-term clinical trials in patients with Duchenne Muscular Dystrophy (DMD) have indicated greater disease variability in terms of progression than expected. In addition, as average life-expectancy increases, reliable data is required on clinical progression in the older DMD population. To determine the effects of corticosteroids on major clinical outcomes of DMD in a large multinational cohort of genetically confirmed DMD patients. In this cross-sectional study we analysed clinical data from 5345 genetically confirmed DMD patients from 31 countries held within the TREAT-NMD global DMD database. For analysis patients were categorised by corticosteroid background and further stratified by age. Loss of ambulation in non-steroid treated patients was 10 years and in corticosteroid treated patients 13 years old (p = 0.0001). Corticosteroid treated patients were less likely to need scoliosis surgery (p < 0.001) or ventilatory support (p < 0.001) and there was a mild cardioprotective effect of corticosteroids in the patient population aged 20 years and older (p = 0.0035). Patients with a single deletion of exon 45 showed an increased survival in contrast to other single exon deletions. This study provides data on clinical outcomes of DMD across many healthcare settings and including a sizeable cohort of older patients. Our data confirm the benefits of corticosteroid treatment on ambulation, need for scoliosis surgery, ventilation and, to a lesser extent, cardiomyopathy. This study underlines the importance of data collection via patient registries and the critical role of multi-centre collaboration in the rare disease field.

The TOAR database on observations of surface ozone (and more)

NASA Astrophysics Data System (ADS)

Schultz, M. G.; Schröder, S.; Cooper, O. R.; Galbally, I. E.; Petropavlovskikh, I. V.; von Schneidemesser, E.; Tanimoto, H.; Elshorbany, Y. F.; Naja, M. K.; Seguel, R. J.

2017-12-01

In support of the first Tropospheric Ozone Assessment Report (TOAR) a relational database of global surface ozone observations has been developed and populated with hourly measurement data and enhanced metadata. A comprehensive suite of ozone data products including standard statistics, health and vegetation impact metrics, and trend information, are made available through a common data portal and a web interface. These data form the basis of the TOAR analyses focusing on human health, vegetation, and climate relevant ozone issues. Cooperation among many data centers and individual researchers worldwide made it possible to build the world's largest collection of in-situ hourly surface ozone data covering the period from 1970 to 2015. By combining the data from almost 10,000 measurement sites around the world with global metadata information, new analyses of surface ozone have become possible, such as the first globally consistent characterisations of measurement sites as either urban or rural/remote. Exploitation of these global metadata allows for new insights into the global distribution, and seasonal and long-term changes of tropospheric ozone and they enable TOAR to perform the first, globally consistent analysis of present-day ozone concentrations and recent ozone changes with relevance to health, agriculture, and climate. This presentation will provide a summary of the TOAR surface observations database including recent additions of ozone precursor and meteorological data. We will demonstrate how the database can be accessed and the data can be used, and we will discuss its limitations and the potential for closing some of teh remaining data gaps.

Bibliography of global change, 1992

NASA Technical Reports Server (NTRS)

1993-01-01

This bibliography lists 585 reports, articles, and other documents introduced in the NASA Scientific and Technical Information Database in 1992. The areas covered include global change, decision making, earth observation (from space), forecasting, global warming, policies, and trends.

ForC: a global database of forest carbon stocks and fluxes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson-Teixeira, Kristina J.; Wang, Maria M. H.; McGarvey, Jennifer C.

Forests play an influential role in the global carbon (C) cycle, storing roughly half of terrestrial C and annually exchanging with the atmosphere more than ten times the carbon dioxide (CO 2) emitted by anthropogenic activities. Yet, scaling up from ground-based measurements of forest C stocks and fluxes to understand global scale C cycling and its climate sensitivity remains an important challenge. Tens of thousands of forest C measurements have been made, but these data have yet to be integrated into a single database that makes them accessible for integrated analyses. Here we present an open-access global Forest Carbon databasemore » (ForC) containing records of ground-based measurements of ecosystem-level C stocks and annual fluxes, along with disturbance history and methodological information. ForC expands upon the previously published tropical portion of this database, TropForC (DOI: 10.5061/dryad.t516f), now including 17,538 records (previously 3568) representing 2,731 plots (previously 845) in 826 geographically distinct areas (previously 178). The database covers all forested biogeographic and climate zones, represents forest stands of all ages, and includes 89 C cycle variables collected between 1934 and 2015. We expect that ForC will prove useful for macroecological analyses of forest C cycling, for evaluation of model predictions or remote sensing products, for quantifying the contribution of forests to the global C cycle, and for supporting international efforts to inventory forest carbon and greenhouse gas exchange. A dynamic version of ForC-db is maintained at https://github.com/forc-db, and we encourage the research community to collaborate in updating, correcting, expanding, and utilizing this database.« less

Bridging international law and rights-based litigation: mapping health-related rights through the development of the Global Health and Human Rights Database.

PubMed

Meier, Benjamin Mason; Cabrera, Oscar A; Ayala, Ana; Gostin, Lawrence O

2012-06-15

The O'Neill Institute for National and Global Health Law at Georgetown University, the World Health Organization, and the Lawyers Collective have come together to develop a searchable Global Health and Human Rights Database that maps the intersection of health and human rights in judgments, international and regional instruments, and national constitutions. Where states long remained unaccountable for violations of health-related human rights, litigation has arisen as a central mechanism in an expanding movement to create rights-based accountability. Facilitated by the incorporation of international human rights standards in national law, this judicial enforcement has supported the implementation of rights-based claims, giving meaning to states' longstanding obligations to realize the highest attainable standard of health. Yet despite these advancements, there has been insufficient awareness of the international and domestic legal instruments enshrining health-related rights and little understanding of the scope and content of litigation upholding these rights. As this accountability movement evolves, the Global Health and Human Rights Database seeks to chart this burgeoning landscape of international instruments, national constitutions, and judgments for health-related rights. Employing international legal research to document and catalogue these three interconnected aspects of human rights for the public's health, the Database's categorization by human rights, health topics, and regional scope provides a comprehensive means of understanding health and human rights law. Through these categorizations, the Global Health and Human Rights Database serves as a basis for analogous legal reasoning across states to serve as precedents for future cases, for comparative legal analysis of similar health claims in different country contexts, and for empirical research to clarify the impact of human rights judgments on public health outcomes. Copyright © 2012 Meier, Nygren-Krug, Cabrera, Ayala, and Gostin.

Optimal stomatal behaviour around the world

NASA Astrophysics Data System (ADS)

Lin, Yan-Shih; Medlyn, Belinda E.; Duursma, Remko A.; Prentice, I. Colin; Wang, Han; Baig, Sofia; Eamus, Derek; de Dios, Victor Resco; Mitchell, Patrick; Ellsworth, David S.; de Beeck, Maarten Op; Wallin, Göran; Uddling, Johan; Tarvainen, Lasse; Linderson, Maj-Lena; Cernusak, Lucas A.; Nippert, Jesse B.; Ocheltree, Troy W.; Tissue, David T.; Martin-Stpaul, Nicolas K.; Rogers, Alistair; Warren, Jeff M.; de Angelis, Paolo; Hikosaka, Kouki; Han, Qingmin; Onoda, Yusuke; Gimeno, Teresa E.; Barton, Craig V. M.; Bennie, Jonathan; Bonal, Damien; Bosc, Alexandre; Löw, Markus; Macinins-Ng, Cate; Rey, Ana; Rowland, Lucy; Setterfield, Samantha A.; Tausz-Posch, Sabine; Zaragoza-Castells, Joana; Broadmeadow, Mark S. J.; Drake, John E.; Freeman, Michael; Ghannoum, Oula; Hutley, Lindsay B.; Kelly, Jeff W.; Kikuzawa, Kihachiro; Kolari, Pasi; Koyama, Kohei; Limousin, Jean-Marc; Meir, Patrick; Lola da Costa, Antonio C.; Mikkelsen, Teis N.; Salinas, Norma; Sun, Wei; Wingate, Lisa

2015-05-01

Stomatal conductance (gs) is a key land-surface attribute as it links transpiration, the dominant component of global land evapotranspiration, and photosynthesis, the driving force of the global carbon cycle. Despite the pivotal role of gs in predictions of global water and carbon cycle changes, a global-scale database and an associated globally applicable model of gs that allow predictions of stomatal behaviour are lacking. Here, we present a database of globally distributed gs obtained in the field for a wide range of plant functional types (PFTs) and biomes. We find that stomatal behaviour differs among PFTs according to their marginal carbon cost of water use, as predicted by the theory underpinning the optimal stomatal model and the leaf and wood economics spectrum. We also demonstrate a global relationship with climate. These findings provide a robust theoretical framework for understanding and predicting the behaviour of gs across biomes and across PFTs that can be applied to regional, continental and global-scale modelling of ecosystem productivity, energy balance and ecohydrological processes in a future changing climate.

LINKING GPS DATA TO GIS DATABASES IN NATURALISTIC STUDIES: EXAMPLES FROM DRIVERS WITH OBSTRUCTIVE SLEEP APNEA

PubMed Central

Dawson, Jeffrey D.; Yu, Lixi; Sewell, Kelly; Skibbe, Adam; Aksan, Nazan S.; Tippin, Jon; Rizzo, Matthew

2015-01-01

Summary In naturalistic studies, it is vital to give appropriate context when analyzing driving behaviors. Such contextualization can help address the hypotheses that explore a) how drivers perform within specific types of environment (e.g., road types, speed limits, etc.), and b) how often drivers are exposed to such specific environments. In order to perform this contextualization in an automated fashion, we are using Global Positioning System (GPS) data obtained at 1 Hz and merging this with Geographic Information Systems (GIS) databases maintained by the Iowa Department of Transportation (DOT). In this paper, we demonstrate our methods of doing this based on data from 43 drivers with obstructive sleep apnea (OSA). We also use maps from GIS software to illustrate how information can be displayed at the individual drive or day level, and we provide examples of some of the challenges that still need to be addressed. PMID:26665183

Reinforcing the foundations of ornithological nomenclature: Filling the gaps in Sherborn's and Richmond's historical legacy of bibliographic exploration.

PubMed

Dickinson, Edward C

2016-01-01

Due to its public popularity, ornithology has a huge corpus of scientific publication for a relatively small number of species. Although there are global checklists of currently recognised taxa, there has been only limited, mainly individual, effort to build a nomenclatural database that the science of ornithology deserves. This is especially true in relation to concise synonymies. With the arrival of ZooBank and the Biodiversity Heritage Library, the time has come to develop synonymies and to add fuller bibliographic detail to databases. The preparation for both began at the start of the 20(th) century with extensive work by Sherborn and Richmond. I discuss their legacy, offer notes on significant work since then, and provide suggestions for what remains to be done. To make solid the foundations for ornithological nomenclature and taxonomy, especially for synonymies, ornithologists will need to collaborate much more and contribute to the digital infrastructure.

Federated or cached searches: Providing expected performance from multiple invasive species databases

NASA Astrophysics Data System (ADS)

Graham, Jim; Jarnevich, Catherine S.; Simpson, Annie; Newman, Gregory J.; Stohlgren, Thomas J.

2011-06-01

Invasive species are a universal global problem, but the information to identify them, manage them, and prevent invasions is stored around the globe in a variety of formats. The Global Invasive Species Information Network is a consortium of organizations working toward providing seamless access to these disparate databases via the Internet. A distributed network of databases can be created using the Internet and a standard web service protocol. There are two options to provide this integration. First, federated searches are being proposed to allow users to search "deep" web documents such as databases for invasive species. A second method is to create a cache of data from the databases for searching. We compare these two methods, and show that federated searches will not provide the performance and flexibility required from users and a central cache of the datum are required to improve performance.

Federated or cached searches: providing expected performance from multiple invasive species databases

USGS Publications Warehouse

Graham, Jim; Jarnevich, Catherine S.; Simpson, Annie; Newman, Gregory J.; Stohlgren, Thomas J.

2011-01-01

Invasive species are a universal global problem, but the information to identify them, manage them, and prevent invasions is stored around the globe in a variety of formats. The Global Invasive Species Information Network is a consortium of organizations working toward providing seamless access to these disparate databases via the Internet. A distributed network of databases can be created using the Internet and a standard web service protocol. There are two options to provide this integration. First, federated searches are being proposed to allow users to search “deep” web documents such as databases for invasive species. A second method is to create a cache of data from the databases for searching. We compare these two methods, and show that federated searches will not provide the performance and flexibility required from users and a central cache of the datum are required to improve performance.

Protocol for developing a Database of Zoonotic disease Research in India (DoZooRI).

PubMed

Chatterjee, Pranab; Bhaumik, Soumyadeep; Chauhan, Abhimanyu Singh; Kakkar, Manish

2017-12-10

Zoonotic and emerging infectious diseases (EIDs) represent a public health threat that has been acknowledged only recently although they have been on the rise for the past several decades. On an average, every year since the Second World War, one pathogen has emerged or re-emerged on a global scale. Low/middle-income countries such as India bear a significant burden of zoonotic and EIDs. We propose that the creation of a database of published, peer-reviewed research will open up avenues for evidence-based policymaking for targeted prevention and control of zoonoses. A large-scale systematic mapping of the published peer-reviewed research conducted in India will be undertaken. All published research will be included in the database, without any prejudice for quality screening, to broaden the scope of included studies. Structured search strategies will be developed for priority zoonotic diseases (leptospirosis, rabies, anthrax, brucellosis, cysticercosis, salmonellosis, bovine tuberculosis, Japanese encephalitis and rickettsial infections), and multiple databases will be searched for studies conducted in India. The database will be managed and hosted on a cloud-based platform called Rayyan. Individual studies will be tagged based on key preidentified parameters (disease, study design, study type, location, randomisation status and interventions, host involvement and others, as applicable). The database will incorporate already published studies, obviating the need for additional ethical clearances. The database will be made available online, and in collaboration with multisectoral teams, domains of enquiries will be identified and subsequent research questions will be raised. The database will be queried for these and resulting evidence will be analysed and published in peer-reviewed journals. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Four barriers to the global understanding of biodiversity conservation: wealth, language, geographical location and security.

PubMed

Amano, Tatsuya; Sutherland, William J

2013-04-07

Global biodiversity conservation is seriously challenged by gaps and heterogeneity in the geographical coverage of existing information. Nevertheless, the key barriers to the collection and compilation of biodiversity information at a global scale have yet to be identified. We show that wealth, language, geographical location and security each play an important role in explaining spatial variations in data availability in four different types of biodiversity databases. The number of records per square kilometre is high in countries with high per capita gross domestic product (GDP), high proportion of English speakers and high security levels, and those located close to the country hosting the database; but these are not necessarily countries with high biodiversity. These factors are considered to affect data availability by impeding either the activities of scientific research or active international communications. Our results demonstrate that efforts to solve environmental problems at a global scale will gain significantly by focusing scientific education, communication, research and collaboration in low-GDP countries with fewer English speakers and located far from Western countries that host the global databases; countries that have experienced conflict may also benefit. Findings of this study may be broadly applicable to other fields that require the compilation of scientific knowledge at a global level.

Seasonal Forecasting of Fire Weather Based on a New Global Fire Weather Database

NASA Technical Reports Server (NTRS)

Dowdy, Andrew J.; Field, Robert D.; Spessa, Allan C.

2016-01-01

Seasonal forecasting of fire weather is examined based on a recently produced global database of the Fire Weather Index (FWI) system beginning in 1980. Seasonal average values of the FWI are examined in relation to measures of the El Nino-Southern Oscillation (ENSO) and the Indian Ocean Dipole (IOD). The results are used to examine seasonal forecasts of fire weather conditions throughout the world.

Power Watch - A global, open database of power plants that supports research on climate, water and air pollution impact of the global power sector.

NASA Astrophysics Data System (ADS)

Friedrich, J.; Kressig, A.; Van Groenou, S.; McCormick, C.

2017-12-01

Challenge The lack of transparent, accessible, and centralized power sector data inhibits the ability to research the impact of the global power sector. information gaps for citizens, analysts, and decision makers worldwide create barriers to sustainable development efforts. The need for transparent, accessible, and centralized information is especially important to enhance the commitments outlined in the recently adopted Paris Agreement and Sustainable Development Goals. Offer Power Watch will address this challenge by creating a comprehensive, open-source platform on the world's power systems. The platform hosts data on 85% of global installed electrical capacity and for each power plant will include data points on installed capacity, fuel type, annual generation, commissioning year, with more characteristics like emissions, particulate matter, annual water demand and more added over time. Most of the data is reported from national level sources, but annual generation and other operational characteristiscs are estimated via Machine Learning modeling and remotely sensed data when not officially reported. In addition, Power Watch plans to provide a suite of tools that address specific decision maker needs, such as water risk assessments and air pollution modeling. Impact Through open data, the platform and its tools will allow reserachers to do more analysis of power sector impacts and perform energy modeling. It will help catalyze accountability for policy makers, businesses, and investors and will inform and drive the transition to a clean energy future while reaching development targets.

Global De Novo Protein-Protein Interactome Elucidates Interactions of Drought-Responsive Proteins in Horse Gram (Macrotyloma uniflorum).

PubMed

Bhardwaj, Jyoti; Gangwar, Indu; Panzade, Ganesh; Shankar, Ravi; Yadav, Sudesh Kumar

2016-06-03

Inspired by the availability of de novo transcriptome of horse gram (Macrotyloma uniflorum) and recent developments in systems biology studies, the first ever global protein-protein interactome (PPI) map was constructed for this highly drought-tolerant legume. Large-scale studies of PPIs and the constructed database would provide rationale behind the interplay at cascading translational levels for drought stress-adaptive mechanisms in horse gram. Using a bidirectional approach (interolog and domain-based), a high-confidence interactome map and database for horse gram was constructed. Available transcriptomic information for shoot and root tissues of a sensitive (M-191; genotype 1) and a drought-tolerant (M-249; genotype 2) genotype of horse gram was utilized to draw comparative PPI subnetworks under drought stress. High-confidence 6804 interactions were predicted among 1812 proteins covering about one-fourth of the horse gram proteome. The highest number of interactions (33.86%) in horse gram interactome matched with Arabidopsis PPI data. The top five hub nodes mostly included ubiquitin and heat-shock-related proteins. Higher numbers of PPIs were found to be responsive in shoot tissue (416) and root tissue (2228) of genotype 2 compared with shoot tissue (136) and root tissue (579) of genotype 1. Characterization of PPIs using gene ontology analysis revealed that kinase and transferase activities involved in signal transduction, cellular processes, nucleocytoplasmic transport, protein ubiquitination, and localization of molecules were most responsive to drought stress. Hence, these could be framed in stress adaptive mechanisms of horse gram. Being the first legume global PPI map, it would provide new insights into gene and protein regulatory networks for drought stress tolerance mechanisms in horse gram. Information compiled in the form of database (MauPIR) will provide the much needed high-confidence systems biology information for horse gram genes, proteins, and involved processes. This information would ease the effort and increase the efficacy for similar studies on other legumes. Public access is available at http://14.139.59.221/MauPIR/ .

Integration of Remotely Sensed Data Into Geospatial Reference Information Databases. Un-Ggim National Approach

NASA Astrophysics Data System (ADS)

Arozarena, A.; Villa, G.; Valcárcel, N.; Pérez, B.

2016-06-01

Remote sensing satellites, together with aerial and terrestrial platforms (mobile and fixed), produce nowadays huge amounts of data coming from a wide variety of sensors. These datasets serve as main data sources for the extraction of Geospatial Reference Information (GRI), constituting the "skeleton" of any Spatial Data Infrastructure (SDI). Since very different situations can be found around the world in terms of geographic information production and management, the generation of global GRI datasets seems extremely challenging. Remotely sensed data, due to its wide availability nowadays, is able to provide fundamental sources for any production or management system present in different countries. After several automatic and semiautomatic processes including ancillary data, the extracted geospatial information is ready to become part of the GRI databases. In order to optimize these data flows for the production of high quality geospatial information and to promote its use to address global challenges several initiatives at national, continental and global levels have been put in place, such as European INSPIRE initiative and Copernicus Programme, and global initiatives such as the Group on Earth Observation/Global Earth Observation System of Systems (GEO/GEOSS) and United Nations Global Geospatial Information Management (UN-GGIM). These workflows are established mainly by public organizations, with the adequate institutional arrangements at national, regional or global levels. Other initiatives, such as Volunteered Geographic Information (VGI), on the other hand may contribute to maintain the GRI databases updated. Remotely sensed data hence becomes one of the main pillars underpinning the establishment of a global SDI, as those datasets will be used by public agencies or institutions as well as by volunteers to extract the required spatial information that in turn will feed the GRI databases. This paper intends to provide an example of how institutional arrangements and cooperative production systems can be set up at any territorial level in order to exploit remotely sensed data in the most intensive manner, taking advantage of all its potential.

Making proteomics data accessible and reusable: current state of proteomics databases and repositories.

PubMed

Perez-Riverol, Yasset; Alpi, Emanuele; Wang, Rui; Hermjakob, Henning; Vizcaíno, Juan Antonio

2015-03-01

Compared to other data-intensive disciplines such as genomics, public deposition and storage of MS-based proteomics, data are still less developed due to, among other reasons, the inherent complexity of the data and the variety of data types and experimental workflows. In order to address this need, several public repositories for MS proteomics experiments have been developed, each with different purposes in mind. The most established resources are the Global Proteome Machine Database (GPMDB), PeptideAtlas, and the PRIDE database. Additionally, there are other useful (in many cases recently developed) resources such as ProteomicsDB, Mass Spectrometry Interactive Virtual Environment (MassIVE), Chorus, MaxQB, PeptideAtlas SRM Experiment Library (PASSEL), Model Organism Protein Expression Database (MOPED), and the Human Proteinpedia. In addition, the ProteomeXchange consortium has been recently developed to enable better integration of public repositories and the coordinated sharing of proteomics information, maximizing its benefit to the scientific community. Here, we will review each of the major proteomics resources independently and some tools that enable the integration, mining and reuse of the data. We will also discuss some of the major challenges and current pitfalls in the integration and sharing of the data. © 2014 The Authors. PROTEOMICS published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Generalized Database Management System Support for Numeric Database Environments.

ERIC Educational Resources Information Center

Dominick, Wayne D.; Weathers, Peggy G.

1982-01-01

This overview of potential for utilizing database management systems (DBMS) within numeric database environments highlights: (1) major features, functions, and characteristics of DBMS; (2) applicability to numeric database environment needs and user needs; (3) current applications of DBMS technology; and (4) research-oriented and…

Science Priorities for Seamounts: Research Links to Conservation and Management

PubMed Central

Clark, Malcolm R.; Schlacher, Thomas A.; Rowden, Ashley A.; Stocks, Karen I.; Consalvey, Mireille

2012-01-01

Seamounts shape the topography of all ocean basins and can be hotspots of biological activity in the deep sea. The Census of Marine Life on Seamounts (CenSeam) was a field program that examined seamounts as part of the global Census of Marine Life (CoML) initiative from 2005 to 2010. CenSeam progressed seamount science by collating historical data, collecting new data, undertaking regional and global analyses of seamount biodiversity, mapping species and habitat distributions, challenging established paradigms of seamount ecology, developing new hypotheses, and documenting the impacts of human activities on seamounts. However, because of the large number of seamounts globally, much about the structure, function and connectivity of seamount ecosystems remains unexplored and unknown. Continual, and potentially increasing, threats to seamount resources from fishing and seabed mining are creating a pressing demand for research to inform conservation and management strategies. To meet this need, intensive science effort in the following areas will be needed: 1) Improved physical and biological data; of particular importance is information on seamount location, physical characteristics (e.g. habitat heterogeneity and complexity), more complete and intensive biodiversity inventories, and increased understanding of seamount connectivity and faunal dispersal; 2) New human impact data; these shall encompass better studies on the effects of human activities on seamount ecosystems, as well as monitoring long-term changes in seamount assemblages following impacts (e.g. recovery); 3) Global data repositories; there is a pressing need for more comprehensive fisheries catch and effort data, especially on the high seas, and compilation or maintenance of geological and biodiversity databases that underpin regional and global analyses; 4) Application of support tools in a data-poor environment; conservation and management will have to increasingly rely on predictive modelling techniques, critical evaluation of environmental surrogates as faunal “proxies”, and ecological risk assessment. PMID:22279531

NASA's Global Change Master Directory: Discover and Access Earth Science Data Sets, Related Data Services, and Climate Diagnostics

NASA Astrophysics Data System (ADS)

Aleman, A.; Olsen, L. M.; Ritz, S.; Stevens, T.; Morahan, M.; Grebas, S. K.

2011-12-01

NASA's Global Change Master Directory provides the scientific community with the ability to discover, access, and use Earth science data, data-related services, and climate diagnostics worldwide.The GCMD offers descriptions of Earth science data sets using the Directory Interchange Format (DIF) metadata standard; Earth science related data services are described using the Service Entry Resource Format (SERF); and climate visualizations are described using the Climate Diagnostic (CD) standard. The DIF, SERF and CD standards each capture data attributes used to determine whether a data set, service, or climate visualization is relevant to a user's needs.Metadata fields include: title, summary, science keywords, service keywords, data center, data set citation, personnel, instrument, platform, quality, related URL, temporal and spatial coverage, data resolution and distribution information.In addition, nine valuable sets of controlled vocabularies have been developed to assist users in normalizing the search for data descriptions. An update to the GCMD's search functionality is planned to further capitalize on the controlled vocabularies during database queries.By implementing a dynamic keyword "tree", users will have the ability to search for data sets by combining keywords in new ways.This will allow users to conduct more relevant and efficient database searches to support the free exchange and re-use of Earth science data.

ITER L-Mode Confinement Database

DOE Office of Scientific and Technical Information (OSTI.GOV)

S.M. Kaye and the ITER Confinement Database Working Group

This paper describes the content of an L-mode database that has been compiled with data from Alcator C-Mod, ASDEX, DIII, DIII-D, FTU, JET, JFT-2M, JT-60, PBX-M, PDX, T-10, TEXTOR, TFTR, and Tore-Supra. The database consists of a total of 2938 entries, 1881 of which are in the L-phase while 922 are ohmically heated (OH) only. Each entry contains up to 95 descriptive parameters, including global and kinetic information, machine conditioning, and configuration. The paper presents a description of the database and the variables contained therein, and it also presents global and thermal scalings along with predictions for ITER. The L-modemore » thermal confinement time scaling was determined from a subset of 1312 entries for which the thermal confinement time scaling was provided.« less

High-resolution global grids of revised Priestley-Taylor and Hargreaves-Samani coefficients for assessing ASCE-standardized reference crop evapotranspiration and solar radiation

NASA Astrophysics Data System (ADS)

Aschonitis, Vassilis G.; Papamichail, Dimitris; Demertzi, Kleoniki; Colombani, Nicolo; Mastrocicco, Micol; Ghirardini, Andrea; Castaldelli, Giuseppe; Fano, Elisa-Anna

2017-08-01

The objective of the study is to provide global grids (0.5°) of revised annual coefficients for the Priestley-Taylor (P-T) and Hargreaves-Samani (H-S) evapotranspiration methods after calibration based on the ASCE (American Society of Civil Engineers)-standardized Penman-Monteith method (the ASCE method includes two reference crops: short-clipped grass and tall alfalfa). The analysis also includes the development of a global grid of revised annual coefficients for solar radiation (Rs) estimations using the respective Rs formula of H-S. The analysis was based on global gridded climatic data of the period 1950-2000. The method for deriving annual coefficients of the P-T and H-S methods was based on partial weighted averages (PWAs) of their mean monthly values. This method estimates the annual values considering the amplitude of the parameter under investigation (ETo and Rs) giving more weight to the monthly coefficients of the months with higher ETo values (or Rs values for the case of the H-S radiation formula). The method also eliminates the effect of unreasonably high or low monthly coefficients that may occur during periods where ETo and Rs fall below a specific threshold. The new coefficients were validated based on data from 140 stations located in various climatic zones of the USA and Australia with expanded observations up to 2016. The validation procedure for ETo estimations of the short reference crop showed that the P-T and H-S methods with the new revised coefficients outperformed the standard methods reducing the estimated root mean square error (RMSE) in ETo values by 40 and 25 %, respectively. The estimations of Rs using the H-S formula with revised coefficients reduced the RMSE by 28 % in comparison to the standard H-S formula. Finally, a raster database was built consisting of (a) global maps for the mean monthly ETo values estimated by ASCE-standardized method for both reference crops, (b) global maps for the revised annual coefficients of the P-T and H-S evapotranspiration methods for both reference crops and a global map for the revised annual coefficient of the H-S radiation formula and (c) global maps that indicate the optimum locations for using the standard P-T and H-S methods and their possible annual errors based on reference values. The database can support estimations of ETo and solar radiation for locations where climatic data are limited and it can support studies which require such estimations on larger scales (e.g. country, continent, world). The datasets produced in this study are archived in the PANGAEA database (https://doi.org/10.1594/PANGAEA.868808) and in the ESRN database (http://www.esrn-database.org or http://esrn-database.weebly.com).

Global synthesis of volcano deformation: Results of the Volcano Deformation Task Force

NASA Astrophysics Data System (ADS)

Pritchard, M. E.; Jay, J.; Biggs, J.; Ebmeier, S. K.; Delgado, F.

2013-12-01

Ground deformation in volcanic regions is being observed more frequently -- the number of known deforming volcanoes has increased from 44 in 1997 to more than 210 in 2013 thanks in large part thanks to the availability of satellite InSAR observations. With the launch of new SAR satellites in the coming years devoted to global deformation monitoring, the number of well-studied episodes of volcano deformation will continue to increase. But evaluating the significance of the observed deformation is not always straightforward -- how often do deformation episodes lead to eruption? Are there certain characteristics of the deformation or the volcano that make the linkage between deformation and eruption more robust -- for example the duration or magnitude of the ground deformation and/or the composition and tectonic setting of the volcano? To answer these questions, a global database of volcano deformation events is needed. Recognizing the need for global information on volcano deformation and the opportunity to address it with InSAR and other techniques, we formed the Volcano Deformation Database Task force as part of Global Volcano Model. The three objectives of our organization are: 1) to compile deformation observations of all volcanoes globally into appropriate formats for WOVOdat and the Global Volcanism Program of the Smithsonian Institution. 2) document any relation between deformation events and eruptions for the Global assessment of volcanic hazard and risk report for 2015 (GAR15) for the UN. 3) to better link InSAR and other remote sensing observations to volcano observatories. We present the first results from our global study of the relation between deformation and eruptions, including case studies of particular eruptions. We compile a systematically-observed catalog of >500 volcanoes with observation windows up to 20 years. Of 90 volcanoes showing deformation, 40 erupted. The positive predictive value (PPV = 0.44) linking deformation and eruption on this timescale indicates ';strong' evidential worth. The negative predictive value (NPV = 0.94) linking non-deformation with non-eruption, is even stronger. But, linking individual deformation events to eruptions is unreliable with existing InSAR data that are rarely available in the critical days to weeks before the eruption of a volcano that has been dormant for decades to millenia. For example, while ground deformation was observed before the 2011 eruptions of Cordon Caulle and Cerro Hudson (both in Chile), the observations were too infrequent to see any change in the pattern or rate of deformation before the eruptions. Before 2011, Cordon Caulle and Cerro Hudson both erupted in the 20th century, but the 2008 eruption of Chaiten (also in Chile) was preceded by centuries of dormancy and still had no measured precursory deformation up to two weeks before eruption. New InSAR missions with more frequent observations along with ground observations from tiltmeters and GPS are essential to constrain whether there is a reliable deformation signal before eruption.

A global multiproxy database for temperature reconstructions of the Common Era.

PubMed

2017-07-11

Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature-sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial. Nearly half of the proxy time series are significantly correlated with HadCRUT4.2 surface temperature over the period 1850-2014. Global temperature composites show a remarkable degree of coherence between high- and low-resolution archives, with broadly similar patterns across archive types, terrestrial versus marine locations, and screening criteria. The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python.

A global multiproxy database for temperature reconstructions of the Common Era

USGS Publications Warehouse

Emile-Geay, Julian; McKay, Nicholas P.; Kaufman, Darrell S.; von Gunten, Lucien; Wang, Jianghao; Anchukaitis, Kevin J.; Abram, Nerilie J.; Addison, Jason A.; Curran, Mark A.J.; Evans, Michael N.; Henley, Benjamin J.; Hao, Zhixin; Martrat, Belen; McGregor, Helen V.; Neukom, Raphael; Pederson, Gregory T.; Stenni, Barbara; Thirumalai, Kaustubh; Werner, Johannes P.; Xu, Chenxi; Divine, Dmitry V.; Dixon, Bronwyn C.; Gergis, Joelle; Mundo, Ignacio A.; Nakatsuka, T.; Phipps, Steven J.; Routson, Cody C.; Steig, Eric J.; Tierney, Jessica E.; Tyler, Jonathan J.; Allen, Kathryn J.; Bertler, Nancy A. N.; Bjorklund, Jesper; Chase, Brian M.; Chen, Min-Te; Cook, Ed; de Jong, Rixt; DeLong, Kristine L.; Dixon, Daniel A.; Ekaykin, Alexey A.; Ersek, Vasile; Filipsson, Helena L.; Francus, Pierre; Freund, Mandy B.; Frezzotti, M.; Gaire, Narayan P.; Gajewski, Konrad; Ge, Quansheng; Goosse, Hugues; Gornostaeva, Anastasia; Grosjean, Martin; Horiuchi, Kazuho; Hormes, Anne; Husum, Katrine; Isaksson, Elisabeth; Kandasamy, Selvaraj; Kawamura, Kenji; Koc, Nalan; Leduc, Guillaume; Linderholm, Hans W.; Lorrey, Andrew M.; Mikhalenko, Vladimir; Mortyn, P. Graham; Motoyama, Hideaki; Moy, Andrew D.; Mulvaney, Robert; Munz, Philipp M.; Nash, David J.; Oerter, Hans; Opel, Thomas; Orsi, Anais J.; Ovchinnikov, Dmitriy V.; Porter, Trevor J.; Roop, Heidi; Saenger, Casey; Sano, Masaki; Sauchyn, David; Saunders, K.M.; Seidenkrantz, Marit-Solveig; Severi, Mirko; Shao, X.; Sicre, Marie-Alexandrine; Sigl, Michael; Sinclair, Kate; St. George, Scott; St. Jacques, Jeannine-Marie; Thamban, Meloth; Thapa, Udya Kuwar; Thomas, E.; Turney, Chris; Uemura, Ryu; Viau, A.E.; Vladimirova, Diana O.; Wahl, Eugene; White, James W. C.; Yu, Z.; Zinke, Jens

2017-01-01

Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature-sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial. Nearly half of the proxy time series are significantly correlated with HadCRUT4.2 surface temperature over the period 1850–2014. Global temperature composites show a remarkable degree of coherence between high- and low-resolution archives, with broadly similar patterns across archive types, terrestrial versus marine locations, and screening criteria. The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python.

A global multiproxy database for temperature reconstructions of the Common Era

PubMed Central

Emile-Geay, Julien; McKay, Nicholas P.; Kaufman, Darrell S.; von Gunten, Lucien; Wang, Jianghao; Anchukaitis, Kevin J.; Abram, Nerilie J.; Addison, Jason A.; Curran, Mark A.J.; Evans, Michael N.; Henley, Benjamin J.; Hao, Zhixin; Martrat, Belen; McGregor, Helen V.; Neukom, Raphael; Pederson, Gregory T.; Stenni, Barbara; Thirumalai, Kaustubh; Werner, Johannes P.; Xu, Chenxi; Divine, Dmitry V.; Dixon, Bronwyn C.; Gergis, Joelle; Mundo, Ignacio A.; Nakatsuka, Takeshi; Phipps, Steven J.; Routson, Cody C.; Steig, Eric J.; Tierney, Jessica E.; Tyler, Jonathan J.; Allen, Kathryn J.; Bertler, Nancy A.N.; Björklund, Jesper; Chase, Brian M.; Chen, Min-Te; Cook, Ed; de Jong, Rixt; DeLong, Kristine L.; Dixon, Daniel A.; Ekaykin, Alexey A.; Ersek, Vasile; Filipsson, Helena L.; Francus, Pierre; Freund, Mandy B.; Frezzotti, Massimo; Gaire, Narayan P.; Gajewski, Konrad; Ge, Quansheng; Goosse, Hugues; Gornostaeva, Anastasia; Grosjean, Martin; Horiuchi, Kazuho; Hormes, Anne; Husum, Katrine; Isaksson, Elisabeth; Kandasamy, Selvaraj; Kawamura, Kenji; Kilbourne, K. Halimeda; Koç, Nalan; Leduc, Guillaume; Linderholm, Hans W.; Lorrey, Andrew M.; Mikhalenko, Vladimir; Mortyn, P. Graham; Motoyama, Hideaki; Moy, Andrew D.; Mulvaney, Robert; Munz, Philipp M.; Nash, David J.; Oerter, Hans; Opel, Thomas; Orsi, Anais J.; Ovchinnikov, Dmitriy V.; Porter, Trevor J.; Roop, Heidi A.; Saenger, Casey; Sano, Masaki; Sauchyn, David; Saunders, Krystyna M.; Seidenkrantz, Marit-Solveig; Severi, Mirko; Shao, Xuemei; Sicre, Marie-Alexandrine; Sigl, Michael; Sinclair, Kate; St. George, Scott; St. Jacques, Jeannine-Marie; Thamban, Meloth; Kuwar Thapa, Udya; Thomas, Elizabeth R.; Turney, Chris; Uemura, Ryu; Viau, Andre E.; Vladimirova, Diana O.; Wahl, Eugene R.; White, James W.C.; Yu, Zicheng; Zinke, Jens

2017-01-01

Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature-sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial. Nearly half of the proxy time series are significantly correlated with HadCRUT4.2 surface temperature over the period 1850–2014. Global temperature composites show a remarkable degree of coherence between high- and low-resolution archives, with broadly similar patterns across archive types, terrestrial versus marine locations, and screening criteria. The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python. PMID:28696409

Epilepsy Research in India: A Scientometric Analysis of Publications Output during 2002-11.

PubMed

Gupta, Brij M; Bala, Adarsh

2013-04-01

This study analyses the research output of India in epilepsy research during 2002-11 on several parameters including the growth, rank and global publications share, citation impact, share of international collaborative papers, contribution of major collaborative partner countries, contribution of various subject-fields, contribution and impact of most productive institutions and authors, media of communication and characteristics of high cited papers. The Scopus Citation Database has been used to retrieve the data for 10 years (2002-11) by searching the keywords "epilepsy research" in the combined Title, Abstract and Keywords fields. Among the top 20 most productive countries in epilepsy research, India ranks at 11(th) position (with 1550 papers) with a global publication share of 2.88% and an annual average publication growth rate of 15.31% during 2002-11. Its global publication share has increased over the years, rising from 2.06% in 2002 to 4.65% during 2011. Its citation impact per paper was 2.77 during 2002-11, which decreased from 3.48 during 2002-06 to 2.41 during 2007-11. Its international collaborative publications share was 12.32% during 2002-11, which decreased from 12.45% during 2002-06 to 12.26% during 2007-11. Concludes that India needs to increase both the quantity and quality of research and also the need to share research data and stimulate national and international collaborative research, which will increase both the quantity and quality of research in epilepsy. There is a need to develop a national program on epilepsy as a part of national health plan, besides suggesting the funding agencies to establish a more ambitious funding program into the causes, prevention, cure and care of epilepsy. There is a need to build capacity at all levels of human resources for the management of epilepsy.

Operational and implementation research within Global Fund to Fight AIDS, Tuberculosis and Malaria grants: a situation analysis in six countries.

PubMed

Kiefer, Sabine; Knoblauch, Astrid M; Steinmann, Peter; Barth-Jaeggi, Tanja; Vahedi, Mahnaz; Maher, Dermot; Utzinger, Jürg; Wyss, Kaspar

2017-03-24

Operational/implementation research (OR/IR) is a key activity to improve disease control programme performance. We assessed the extent to which malaria and tuberculosis (TB) grants from the Global Fund to Fight AIDS, Tuberculosis and Malaria ("Global Fund") include support for OR/IR, and discuss the implications of the current Global Fund operating mechanisms for OR/IR support. The situation analysis focussed on malaria and TB, while HIV was excluded. Stakeholder interviews were conducted at the Global Fund secretariat and in six purposefully selected high disease burden countries, namely the Democratic Republic of the Congo, Ethiopia, India, Indonesia, Myanmar and Zimbabwe. Interviewed in-country stakeholders included the relevant disease control programme managers, project implementation partners, representatives from international organisations with a stake in global health, academic and governmental research institutions, and other relevant individuals such as members of the country coordination mechanism. Additionally, documentation of grants and OR/IR obtained from the Global Fund was reviewed. The Global Fund provides substantial resources for malaria and TB surveys, and supports OR/IR if such support is requested and the application is well justified. We observed considerable variations from one country to another and between programmes with regards to need, demand, absorption capacity and funding for OR/IR related to malaria and TB. Important determinants for the extent of such funding are the involvement of national research coordination bodies, established research agendas and priorities, human and technical research capacity, and involvement of relevant stakeholders in concept note development. Efforts to disseminate OR/IR findings were generally weak, and the Global Fund does not maintain a central OR/IR database. When faced with a need to choose between procurement of commodities for disease control and supporting research, countries tend to seek research funding from other donors. The Global Fund is expected to issue more specific guidance on the conditions under which it supports OR/IR, and to adapt administrative procedures to facilitate research. The importance of OR/IR for optimising disease control programmes is generally accepted but countries vary in their capacity to demand and implement studies. Countries expect guidance on OR/IR from the Global Fund. Administrative procedures specifically related to the budget planning should be modified to facilitate ad-hoc OR/IR funding. More generally, several countries expressed a need to strengthen capacity for planning, negotiating and implementing research.

Exploring earthquake databases for the creation of magnitude-homogeneous catalogues: tools for application on a regional and global scale

NASA Astrophysics Data System (ADS)

Weatherill, G. A.; Pagani, M.; Garcia, J.

2016-09-01

The creation of a magnitude-homogenized catalogue is often one of the most fundamental steps in seismic hazard analysis. The process of homogenizing multiple catalogues of earthquakes into a single unified catalogue typically requires careful appraisal of available bulletins, identification of common events within multiple bulletins and the development and application of empirical models to convert from each catalogue's native scale into the required target. The database of the International Seismological Center (ISC) provides the most exhaustive compilation of records from local bulletins, in addition to its reviewed global bulletin. New open-source tools are developed that can utilize this, or any other compiled database, to explore the relations between earthquake solutions provided by different recording networks, and to build and apply empirical models in order to harmonize magnitude scales for the purpose of creating magnitude-homogeneous earthquake catalogues. These tools are described and their application illustrated in two different contexts. The first is a simple application in the Sub-Saharan Africa region where the spatial coverage and magnitude scales for different local recording networks are compared, and their relation to global magnitude scales explored. In the second application the tools are used on a global scale for the purpose of creating an extended magnitude-homogeneous global earthquake catalogue. Several existing high-quality earthquake databases, such as the ISC-GEM and the ISC Reviewed Bulletins, are harmonized into moment magnitude to form a catalogue of more than 562 840 events. This extended catalogue, while not an appropriate substitute for a locally calibrated analysis, can help in studying global patterns in seismicity and hazard, and is therefore released with the accompanying software.

Global teaching and training initiatives for emerging cohort studies

PubMed Central

Paulus, Jessica K.; Santoyo-Vistrain, Rocío; Havelick, David; Cohen, Amy; Kalyesubula, Robert; Ajayi, Ikeoluwapo O.; Mattsson, Jens G.; Adami, Hans-Olov; Dalal, Shona

2015-01-01

A striking disparity exists across the globe, with essentially no large-scale longitudinal studies ongoing in regions that will be significantly affected by the oncoming non-communicable disease epidemic. The successful implementation of cohort studies in most low-resource research environments presents unique challenges that may be aided by coordinated training programs. Leaders of emerging cohort studies attending the First World Cohort Integration Workshop were surveyed about training priorities, unmet needs and potential cross-cohort solutions to these barriers through an electronic pre-workshop questionnaire and focus groups. Cohort studies representing India, Mexico, Nigeria, South Africa, Sweden, Tanzania and Uganda described similar training needs, including on-the-job training, data analysis software instruction, and database and bio-bank management. A lack of funding and protected time for training activities were commonly identified constraints. Proposed solutions include a collaborative cross-cohort teaching platform with web-based content and interactive teaching methods for a range of research personnel. An international network for research mentorship and idea exchange, and modifying the graduate thesis structure were also identified as key initiatives. Cross-cohort integrated educational initiatives will efficiently meet shared needs, catalyze the development of emerging cohorts, speed closure of the global disparity in cohort research, and may fortify scientific capacity development in low-resource settings. PMID:23856451

Producing a Climate-Quality Database of Global Upper Ocean Profile Temperatures - The IQuOD (International Quality-controlled Ocean Database) Project.

NASA Astrophysics Data System (ADS)

Sprintall, J.; Cowley, R.; Palmer, M. D.; Domingues, C. M.; Suzuki, T.; Ishii, M.; Boyer, T.; Goni, G. J.; Gouretski, V. V.; Macdonald, A. M.; Thresher, A.; Good, S. A.; Diggs, S. C.

2016-02-01

Historical ocean temperature profile observations provide a critical element for a host of ocean and climate research activities. These include providing initial conditions for seasonal-to-decadal prediction systems, evaluating past variations in sea level and Earth's energy imbalance, ocean state estimation for studying variability and change, and climate model evaluation and development. The International Quality controlled Ocean Database (IQuOD) initiative represents a community effort to create the most globally complete temperature profile dataset, with (intelligent) metadata and assigned uncertainties. With an internationally coordinated effort organized by oceanographers, with data and ocean instrumentation expertise, and in close consultation with end users (e.g., climate modelers), the IQuOD initiative will assess and maximize the potential of an irreplaceable collection of ocean temperature observations (tens of millions of profiles collected at a cost of tens of billions of dollars, since 1772) to fulfil the demand for a climate-quality global database that can be used with greater confidence in a vast range of climate change related research and services of societal benefit. Progress towards version 1 of the IQuOD database, ongoing and future work will be presented. More information on IQuOD is available at www.iquod.org.

Global exchange and accumulation of non-native plants

NASA Astrophysics Data System (ADS)

van Kleunen, Mark; Dawson, Wayne; Essl, Franz; Pergl, Jan; Winter, Marten; Weber, Ewald; Kreft, Holger; Weigelt, Patrick; Kartesz, John; Nishino, Misako; Antonova, Liubov A.; Barcelona, Julie F.; Cabezas, Francisco J.; Cárdenas, Dairon; Cárdenas-Toro, Juliana; Castaño, Nicolás; Chacón, Eduardo; Chatelain, Cyrille; Ebel, Aleksandr L.; Figueiredo, Estrela; Fuentes, Nicol; Groom, Quentin J.; Henderson, Lesley; Inderjit; Kupriyanov, Andrey; Masciadri, Silvana; Meerman, Jan; Morozova, Olga; Moser, Dietmar; Nickrent, Daniel L.; Patzelt, Annette; Pelser, Pieter B.; Baptiste, María P.; Poopath, Manop; Schulze, Maria; Seebens, Hanno; Shu, Wen-Sheng; Thomas, Jacob; Velayos, Mauricio; Wieringa, Jan J.; Pyšek, Petr

2015-09-01

All around the globe, humans have greatly altered the abiotic and biotic environment with ever-increasing speed. One defining feature of the Anthropocene epoch is the erosion of biogeographical barriers by human-mediated dispersal of species into new regions, where they can naturalize and cause ecological, economic and social damage. So far, no comprehensive analysis of the global accumulation and exchange of alien plant species between continents has been performed, primarily because of a lack of data. Here we bridge this knowledge gap by using a unique global database on the occurrences of naturalized alien plant species in 481 mainland and 362 island regions. In total, 13,168 plant species, corresponding to 3.9% of the extant global vascular flora, or approximately the size of the native European flora, have become naturalized somewhere on the globe as a result of human activity. North America has accumulated the largest number of naturalized species, whereas the Pacific Islands show the fastest increase in species numbers with respect to their land area. Continents in the Northern Hemisphere have been the major donors of naturalized alien species to all other continents. Our results quantify for the first time the extent of plant naturalizations worldwide, and illustrate the urgent need for globally integrated efforts to control, manage and understand the spread of alien species.

Global exchange and accumulation of non-native plants.

PubMed

van Kleunen, Mark; Dawson, Wayne; Essl, Franz; Pergl, Jan; Winter, Marten; Weber, Ewald; Kreft, Holger; Weigelt, Patrick; Kartesz, John; Nishino, Misako; Antonova, Liubov A; Barcelona, Julie F; Cabezas, Francisco J; Cárdenas, Dairon; Cárdenas-Toro, Juliana; Castaño, Nicolás; Chacón, Eduardo; Chatelain, Cyrille; Ebel, Aleksandr L; Figueiredo, Estrela; Fuentes, Nicol; Groom, Quentin J; Henderson, Lesley; Inderjit; Kupriyanov, Andrey; Masciadri, Silvana; Meerman, Jan; Morozova, Olga; Moser, Dietmar; Nickrent, Daniel L; Patzelt, Annette; Pelser, Pieter B; Baptiste, María P; Poopath, Manop; Schulze, Maria; Seebens, Hanno; Shu, Wen-sheng; Thomas, Jacob; Velayos, Mauricio; Wieringa, Jan J; Pyšek, Petr

2015-09-03

All around the globe, humans have greatly altered the abiotic and biotic environment with ever-increasing speed. One defining feature of the Anthropocene epoch is the erosion of biogeographical barriers by human-mediated dispersal of species into new regions, where they can naturalize and cause ecological, economic and social damage. So far, no comprehensive analysis of the global accumulation and exchange of alien plant species between continents has been performed, primarily because of a lack of data. Here we bridge this knowledge gap by using a unique global database on the occurrences of naturalized alien plant species in 481 mainland and 362 island regions. In total, 13,168 plant species, corresponding to 3.9% of the extant global vascular flora, or approximately the size of the native European flora, have become naturalized somewhere on the globe as a result of human activity. North America has accumulated the largest number of naturalized species, whereas the Pacific Islands show the fastest increase in species numbers with respect to their land area. Continents in the Northern Hemisphere have been the major donors of naturalized alien species to all other continents. Our results quantify for the first time the extent of plant naturalizations worldwide, and illustrate the urgent need for globally integrated efforts to control, manage and understand the spread of alien species.

Measuring Progress Toward Universal Health Coverage: Does the Monitoring Framework of Bangladesh Need Further Improvement?

PubMed

Gupta, Rajat Das; Shahabuddin, Asm

2018-01-08

This review aimed to compare Bangladesh's Universal Health Coverage (UHC) monitoring framework with the global-level recommendations and to find out the existing gaps of Bangladesh's UHC monitoring framework compared to the global recommendations. In order to reach the aims of the review, we systematically searched two electronic databases - PubMed and Google Scholar - by using appropriate keywords to select articles that describe issues related to UHC and the monitoring framework of UHC applied globally and particularly in Bangladesh. Four relevant documents were found and synthesized. The review found that Bangladesh incorporated all of the recommendations suggested by the global monitoring framework regarding mentoring the financial risk protection and equity perspective. However, a significant gap in the monitoring framework related to service coverage was observed. Although Bangladesh has a significant burden of mental illnesses, cataract, and neglected tropical diseases, indicators related to these issues were absent in Bangladesh's UHC framework. Moreover, palliative-care-related indicators were completely missing in the framework. The results of this review suggest that Bangladesh should incorporate these indicators in their UHC monitoring framework in order to track the progress of the country toward UHC more efficiently and in a robust way.

Global variability in leaf respiration in relation to climate and leaf traits

NASA Astrophysics Data System (ADS)

Atkin, Owen K.

2015-04-01

Leaf respiration plays a vital role in regulating ecosystem functioning and the Earth's climate. Because of this, it is imperative that that Earth-system, climate and ecosystem-level models be able to accurately predict variations in rates of leaf respiration. In the field of photosynthesis research, the F/vC/B model has enabled modellers to accurately predict variations in photosynthesis through time and space. By contrast, we lack an equivalent biochemical model to predict variations in leaf respiration. Consequently, we need to rely on phenomenological approaches to model variations in respiration across the Earth's surface. Such approaches require that we develop a thorough understanding of how rates of respiration vary among species and whether global environmental gradients play a role in determining variations in leaf respiration. Dealing with these issues requires that data sets be assembled on rates of leaf respiration in biomes across the Earth's surface. In this talk, I will use a newly-assembled global database on leaf respiration and associated traits (including photosynthesis) to highlight variation in leaf respiration (and the balance between respiration and photosynthesis) across global gradients in growth temperature and aridity.

An enhanced VIIRS aerosol optical thickness (AOT) retrieval algorithm over land using a global surface reflectance ratio database

NASA Astrophysics Data System (ADS)

Zhang, Hai; Kondragunta, Shobha; Laszlo, Istvan; Liu, Hongqing; Remer, Lorraine A.; Huang, Jingfeng; Superczynski, Stephen; Ciren, Pubu

2016-09-01

The Visible/Infrared Imager Radiometer Suite (VIIRS) on board the Suomi National Polar-orbiting Partnership (S-NPP) satellite has been retrieving aerosol optical thickness (AOT), operationally and globally, over ocean and land since shortly after S-NPP launch in 2011. However, the current operational VIIRS AOT retrieval algorithm over land has two limitations in its assumptions for land surfaces: (1) it only retrieves AOT over the dark surfaces and (2) it assumes that the global surface reflectance ratios between VIIRS bands are constants. In this work, we develop a surface reflectance ratio database over land with a spatial resolution 0.1° × 0.1° using 2 years of VIIRS top of atmosphere reflectances. We enhance the current operational VIIRS AOT retrieval algorithm by applying the surface reflectance ratio database in the algorithm. The enhanced algorithm is able to retrieve AOT over both dark and bright surfaces. Over bright surfaces, the VIIRS AOT retrievals from the enhanced algorithm have a correlation of 0.79, mean bias of -0.008, and standard deviation (STD) of error of 0.139 when compared against the ground-based observations at the global AERONET (Aerosol Robotic Network) sites. Over dark surfaces, the VIIRS AOT retrievals using the surface reflectance ratio database improve the root-mean-square error from 0.150 to 0.123. The use of the surface reflectance ratio database also increases the data coverage of more than 20% over dark surfaces. The AOT retrievals over bright surfaces are comparable to MODIS Deep Blue AOT retrievals.

An Update of the Bodeker Scientific Vertically Resolved, Global, Gap-Free Ozone Database

NASA Astrophysics Data System (ADS)

Kremser, S.; Bodeker, G. E.; Lewis, J.; Hassler, B.

2016-12-01

High vertical resolution ozone measurements from multiple satellite-based instruments have been merged with measurements from the global ozonesonde network to calculate monthly mean ozone values in 5º latitude zones. Ozone number densities and ozone mixing ratios are provided on 70 altitude levels (1 to 70 km) and on 70 pressure levels spaced approximately 1 km apart (878.4 hPa to 0.046 hPa). These data are sparse and do not cover the entire globe or altitude range. To provide a gap-free database, a least squares regression model is fitted to these data and then evaluated globally. By applying a single fit at each level, and using the approach of allowing the regression fits to change only slightly from one level to the next, the regression is less sensitive to measurement anomalies at individual stations or to individual satellite-based instruments. Particular attention is paid to ensuring that the low ozone abundances in the polar regions are captured. This presentation reports on updates to an earlier version of the vertically resolved ozone database, including the incorporation of new ozone measurements and new techniques for combining the data. Compared to previous versions of the database, particular attention is paid to avoiding spatial and temporal sampling biases and tracing uncertainties through to the final product. This updated database, developed within the New Zealand Deep South National Science Challenge, is suitable for assessing ozone fields from chemistry-climate model simulations or for providing the ozone boundary conditions for global climate model simulations that do not treat stratospheric chemistry interactively.

Estimates of Embodied Global Energy and Air-Emission Intensities of Japanese Products for Building a Japanese Input–Output Life Cycle Assessment Database with a Global System Boundary

PubMed Central

2012-01-01

To build a life cycle assessment (LCA) database of Japanese products embracing their global supply chains in a manner requiring lower time and labor burdens, this study estimates the intensity of embodied global environmental burden for commodities produced in Japan. The intensity of embodied global environmental burden is a measure of the environmental burden generated globally by unit production of the commodity and can be used as life cycle inventory data in LCA. The calculation employs an input–output LCA method with a global link input–output model that defines a global system boundary grounded in a simplified multiregional input–output framework. As results, the intensities of embodied global environmental burden for 406 Japanese commodities are determined in terms of energy consumption, greenhouse-gas emissions (carbon dioxide, methane, nitrous oxide, perfluorocarbons, hydrofluorocarbons, sulfur hexafluoride, and their summation), and air-pollutant emissions (nitrogen oxide and sulfur oxide). The uncertainties in the intensities of embodied global environmental burden attributable to the simplified structure of the global link input–output model are quantified using Monte Carlo simulation. In addition, by analyzing the structure of the embodied global greenhouse-gas intensities we characterize Japanese commodities in the context of LCA embracing global supply chains. PMID:22881452

Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

PubMed Central

Brudey, Karine; Driscoll, Jeffrey R; Rigouts, Leen; Prodinger, Wolfgang M; Gori, Andrea; Al-Hajoj, Sahal A; Allix, Caroline; Aristimuño, Liselotte; Arora, Jyoti; Baumanis, Viesturs; Binder, Lothar; Cafrune, Patricia; Cataldi, Angel; Cheong, Soonfatt; Diel, Roland; Ellermeier, Christopher; Evans, Jason T; Fauville-Dufaux, Maryse; Ferdinand, Séverine; de Viedma, Dario Garcia; Garzelli, Carlo; Gazzola, Lidia; Gomes, Harrison M; Guttierez, M Cristina; Hawkey, Peter M; van Helden, Paul D; Kadival, Gurujaj V; Kreiswirth, Barry N; Kremer, Kristin; Kubin, Milan; Kulkarni, Savita P; Liens, Benjamin; Lillebaek, Troels; Ly, Ho Minh; Martin, Carlos; Martin, Christian; Mokrousov, Igor; Narvskaïa, Olga; Ngeow, Yun Fong; Naumann, Ludmilla; Niemann, Stefan; Parwati, Ida; Rahim, Zeaur; Rasolofo-Razanamparany, Voahangy; Rasolonavalona, Tiana; Rossetti, M Lucia; Rüsch-Gerdes, Sabine; Sajduda, Anna; Samper, Sofia; Shemyakin, Igor G; Singh, Urvashi B; Somoskovi, Akos; Skuce, Robin A; van Soolingen, Dick; Streicher, Elisabeth M; Suffys, Philip N; Tortoli, Enrico; Tracevska, Tatjana; Vincent, Véronique; Victor, Tommie C; Warren, Robin M; Yap, Sook Fan; Zaman, Khadiza; Portaels, Françoise; Rastogi, Nalin; Sola, Christophe

2006-01-01

Background The Direct Repeat locus of the Mycobacterium tuberculosis complex (MTC) is a member of the CRISPR (Clustered regularly interspaced short palindromic repeats) sequences family. Spoligotyping is the widely used PCR-based reverse-hybridization blotting technique that assays the genetic diversity of this locus and is useful both for clinical laboratory, molecular epidemiology, evolutionary and population genetics. It is easy, robust, cheap, and produces highly diverse portable numerical results, as the result of the combination of (1) Unique Events Polymorphism (UEP) (2) Insertion-Sequence-mediated genetic recombination. Genetic convergence, although rare, was also previously demonstrated. Three previous international spoligotype databases had partly revealed the global and local geographical structures of MTC bacilli populations, however, there was a need for the release of a new, more representative and extended, international spoligotyping database. Results The fourth international spoligotyping database, SpolDB4, describes 1939 shared-types (STs) representative of a total of 39,295 strains from 122 countries, which are tentatively classified into 62 clades/lineages using a mixed expert-based and bioinformatical approach. The SpolDB4 update adds 26 new potentially phylogeographically-specific MTC genotype families. It provides a clearer picture of the current MTC genomes diversity as well as on the relationships between the genetic attributes investigated (spoligotypes) and the infra-species classification and evolutionary history of the species. Indeed, an independent Naïve-Bayes mixture-model analysis has validated main of the previous supervised SpolDB3 classification results, confirming the usefulness of both supervised and unsupervised models as an approach to understand MTC population structure. Updated results on the epidemiological status of spoligotypes, as well as genetic prevalence maps on six main lineages are also shown. Our results suggests the existence of fine geographical genetic clines within MTC populations, that could mirror the passed and present Homo sapiens sapiens demographical and mycobacterial co-evolutionary history whose structure could be further reconstructed and modelled, thereby providing a large-scale conceptual framework of the global TB Epidemiologic Network. Conclusion Our results broaden the knowledge of the global phylogeography of the MTC complex. SpolDB4 should be a very useful tool to better define the identity of a given MTC clinical isolate, and to better analyze the links between its current spreading and previous evolutionary history. The building and mining of extended MTC polymorphic genetic databases is in progress. PMID:16519816

In-situ databases and comparison of ESA Ocean Colour Climate Change Initiative (OC-CCI) products with precursor data, towards an integrated approach for ocean colour validation and climate studies

NASA Astrophysics Data System (ADS)

Brotas, Vanda; Valente, André; Couto, André B.; Grant, Mike; Chuprin, Andrei; Jackson, Thomas; Groom, Steve; Sathyendranath, Shubha

2014-05-01

Ocean colour (OC) is an Oceanic Essential Climate Variable, which is used by climate modellers and researchers. The European Space Agency (ESA) Climate Change Initiative project, is the ESA response for the need of climate-quality satellite data, with the goal of providing stable, long-term, satellite-based ECV data products. The ESA Ocean Colour CCI focuses on the production of Ocean Colour ECV uses remote sensing reflectances to derive inherent optical properties and chlorophyll a concentration from ESA's MERIS (2002-2012) and NASA's SeaWiFS (1997 - 2010) and MODIS (2002-2012) sensor archives. This work presents an integrated approach by setting up a global database of in situ measurements and by inter-comparing OC-CCI products with pre-cursor datasets. The availability of in situ databases is fundamental for the validation of satellite derived ocean colour products. A global distribution in situ database was assembled, from several pre-existing datasets, with data spanning between 1997 and 2012. It includes in-situ measurements of remote sensing reflectances, concentration of chlorophyll-a, inherent optical properties and diffuse attenuation coefficient. The database is composed from observations of the following datasets: NOMAD, SeaBASS, MERMAID, AERONET-OC, BOUSSOLE and HOTS. The result was a merged dataset tuned for the validation of satellite-derived ocean colour products. This was an attempt to gather, homogenize and merge, a large high-quality bio-optical marine in situ data, as using all datasets in a single validation exercise increases the number of matchups and enhances the representativeness of different marine regimes. An inter-comparison analysis between OC-CCI chlorophyll-a product and satellite pre-cursor datasets was done with single missions and merged single mission products. Single mission datasets considered were SeaWiFS, MODIS-Aqua and MERIS; merged mission datasets were obtained from the GlobColour (GC) as well as the Making Earth Science Data Records for Use in Research Environments (MEaSUREs). OC-CCI product was found to be most similar to SeaWiFS record, and generally, the OC-CCI record was most similar to records derived from single mission than merged mission initiatives. Results suggest that CCI product is a more consistent dataset than other available merged mission initiatives. In conclusion, climate related science, requires long term data records to provide robust results, OC-CCI product proves to be a worthy data record for climate research, as it combines multi-sensor OC observations to provide a >15-year global error-characterized record.

78 FR 38055 - Building Research Capacity in Global Tobacco Product Regulation Program (U18)

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-25

... Monitoring Database. Examples of Global Tobacco Research Reports/White Papers: [cir] WHO report on the global...] Building Research Capacity in Global Tobacco Product Regulation Program (U18) AGENCY: Food and Drug... availability of grant funds for the support of the Center for Tobacco Product's (CTP's) Building Research...

Optimal stomatal behaviour around the world

DOE PAGES

Lin, Yan-Shih; Medlyn, Belinda E.; Duursma, Remko A.; ...

2015-03-02

Stomatal conductance (g s) is a key land-surface attribute as it links transpiration, the dominant component of global land evapotranspiration, and photosynthesis, the driving force of the global carbon cycle. Despite the pivotal role of g s in predictions of global water and carbon cycle changes, a global-scale database and an associated globally applicable model of g s that allow predictions of stomatal behaviour are lacking. Here, we present a database of globally distributed g s obtained in the field for a wide range of plant functional types (PFTs) and biomes. We find that stomatal behaviour differs among PFTs accordingmore » to their marginal carbon cost of water use, as predicted by the theory underpinning the optimal stomatal model 1 and the leaf and wood economics spectrum 2,3. We also demonstrate a global relationship with climate. In conclusion, these findings provide a robust theoretical framework for understanding and predicting the behaviour of g s across biomes and across PFTs that can be applied to regional, continental and global-scale modelling of ecosystem productivity, energy balance and ecohydrological processes in a future changing climate.« less

The Need for Formal Surgical Global Health Programs and Improved Mission Trip Coordination.

PubMed

Medoff, Sar; Freed, Jeffrey

There is a dire need for more surgical services as part of improving global health. Conditions treatable with surgery account for 11% of the global burden of disease, with a disproportionate burden affecting low- and middle-income countries (LMICs). Less than 6% of the world's operations are performed in LMICs, with relief organizations performing nearly 250,000 operations annually in LMICs in addition to each country's domestic surgical capacity. Currently, surgical needs are not adequately met by the existing patchwork of federal and nongovernmental organizations' surgical services and surgical mission trips. Improving coordination between mission trips may have synergistic benefits for maximizing the efficacy of the individual trips and improving the overall quality of care. To establish whether cooperation between surgical mission trips can lead to operational efficiency and to identify obstacles to cooperation. In order to establish the veracity of cooperation translating into efficiency and to identify obstacles that prevent cooperation, a 50-question survey was created (see Supplement 1). The survey was sent to surgical program directors of the 147 major surgical programs in the United States and Canada with a follow-up telephone survey of 18 randomly selected programs. The survey response rate was 14%. Although 90% of respondent programs mount at least 1 mission trip per year, only one-third confirmed the existence of global health or surgical global health programs at their institution (33%). There was significant interest in cooperating with programs at other institutions (80%). When asked why they do not communicate with humanitarian aid organizations doing similar work, 53% of respondents reported a "lack of knowledge of how to find similar organizations to mine doing similar work." An additional 21% of respondents were "unaware that coordination is possible." A minority of respondent surgery programs host formal, organized surgical global health programs with a structured leadership based at academic medical centers. Although most institutions have individuals leading international humanitarian missions to LMICs, these leaders do not function in an integrated fashion with their departments, institutions, or other academic medical programs. The majority of respondents were interested in coordinating their surgical trips with other groups. Respondents suggested the creation of a central database that would allow trip organizers to share information about upcoming trips, site logistics, and personnel or supply needs. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Organ donation and transplantation: Awareness and roles of healthcare professionals-A systematic literature review.

PubMed

Jawoniyi, Oluwafunmilayo; Gormley, Kevin; McGleenan, Emma; Noble, Helen Rose

2018-03-01

To examine the role of healthcare professionals in the organ donation and transplantation process. Globally, there remains a perennial disequilibrium between organ donation and organ transplantation. Several factors account for this disequilibrium; however, as healthcare professionals are not only strategically positioned as the primary intermediaries between organ donors and transplant recipients, but also professionally situated as the implementers of organ donation and transplantation processes, they are often blamed for the global organ shortage. Mixed-method systematic review using the Preferred Reporting Items for Systematic review and Meta-Analysis Protocols 2015 checklist. Databases were searched including CINAHL, MEDLINE, Web of Science and EMBASE using the search terms "organ donation," "healthcare professionals," "awareness" and "roles" to retrieve relevant publications. Thirteen publications met the inclusion criteria. The global organ shortage is neither contingent upon unavailability of suitable organs nor exclusively dependent upon healthcare professionals. Instead, the existence of disequilibrium between organ donation and transplantation is necessitated by a web of factors. These include the following: healthcare professionals' attitudes towards, and experience of, the organ donation and transplantation process, underpinned by professional education, specialist clinical area and duration of professional practice; conflicts of interests; ethical dilemmas; altruistic values towards organ donation; and varied organ donation legislations in different legal jurisdictions. This review maintains that if this web of factors is to be adequately addressed by healthcare systems in different global and legal jurisdictions, there should be sufficient organs voluntarily donated to meet all transplantation needs. There is a suggestion that healthcare professionals partly account for the global shortage in organ donation, but there is a need to examine how healthcare professionals' roles, knowledge, awareness, skills and competencies might impact upon the organ donation and transplantation process. © 2017 John Wiley & Sons Ltd.

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources

PubMed Central

2009-01-01

Background DNA barcoding provides a rapid, accurate, and standardized method for species-level identification using short DNA sequences. Such a standardized identification method is useful for mapping all the species on Earth, particularly when DNA sequencing technology is cheaply available. There are many nations in Asia with many biodiversity resources that need to be mapped and registered in databases. Results We have built a general DNA barcode data processing system, BioBarcode, with open source software - which is a general purpose database and server. It uses mySQL RDBMS 5.0, BLAST2, and Apache httpd server. An exemplary database of BioBarcode has around 11,300 specimen entries (including GenBank data) and registers the biological species to map their genetic relationships. The BioBarcode database contains a chromatogram viewer which improves the performance in DNA sequence analyses. Conclusion Asia has a very high degree of biodiversity and the BioBarcode database server system aims to provide an efficient bioinformatics protocol that can be freely used by Asian researchers and research organizations interested in DNA barcoding. The BioBarcode promotes the rapid acquisition of biological species DNA sequence data that meet global standards by providing specialized services, and provides useful tools that will make barcoding cheaper and faster in the biodiversity community such as standardization, depository, management, and analysis of DNA barcode data. The system can be downloaded upon request, and an exemplary server has been constructed with which to build an Asian biodiversity system http://www.asianbarcode.org. PMID:19958506

The TERRA-PNW Dataset: A New Source for Standardized Plant Trait, Forest Carbon Cycling, and Soil Properties Measurements from the Pacific Northwest US, 2000-2014.

NASA Astrophysics Data System (ADS)

Berner, L. T.; Law, B. E.

2015-12-01

Plant traits include physiological, morphological, and biogeochemical characteristics that in combination determine a species sensitivity to environmental conditions. Standardized, co-located, and geo-referenced species- and plot-level measurements are needed to address variation in species sensitivity to climate change impacts and for ecosystem process model development, parameterization and testing. We present a new database of plant trait, forest carbon cycling, and soil property measurements derived from multiple TERRA-PNW projects in the Pacific Northwest US, spanning 2000-2014. The database includes measurements from over 200 forest plots across Oregon and northern California, where the data were explicitly collected for scaling and modeling regional terrestrial carbon processes with models such as Biome-BGC and the Community Land Model. Some of the data are co-located at AmeriFlux sites in the region. The database currently contains leaf trait measurements (specific leaf area, leaf longevity, leaf carbon and nitrogen) from over 1,200 branch samples and 30 species, as well as plot-level biomass and productivity components, and soil carbon and nitrogen. Standardized protocols were used across projects, as summarized in an FAO protocols document. The database continues to expand and will include agricultural crops. The database will be hosted by the Oak Ridge National Laboratory (ORLN) Distributed Active Archive Center (DAAC). We hope that other regional databases will become publicly available to help enable Earth System Modeling to simulate species-level sensitivity to climate at regional to global scales.

GOSSIP: a method for fast and accurate global alignment of protein structures.

PubMed

Kifer, I; Nussinov, R; Wolfson, H J

2011-04-01

The database of known protein structures (PDB) is increasing rapidly. This results in a growing need for methods that can cope with the vast amount of structural data. To analyze the accumulating data, it is important to have a fast tool for identifying similar structures and clustering them by structural resemblance. Several excellent tools have been developed for the comparison of protein structures. These usually address the task of local structure alignment, an important yet computationally intensive problem due to its complexity. It is difficult to use such tools for comparing a large number of structures to each other at a reasonable time. Here we present GOSSIP, a novel method for a global all-against-all alignment of any set of protein structures. The method detects similarities between structures down to a certain cutoff (a parameter of the program), hence allowing it to detect similar structures at a much higher speed than local structure alignment methods. GOSSIP compares many structures in times which are several orders of magnitude faster than well-known available structure alignment servers, and it is also faster than a database scanning method. We evaluate GOSSIP both on a dataset of short structural fragments and on two large sequence-diverse structural benchmarks. Our conclusions are that for a threshold of 0.6 and above, the speed of GOSSIP is obtained with no compromise of the accuracy of the alignments or of the number of detected global similarities. A server, as well as an executable for download, are available at http://bioinfo3d.cs.tau.ac.il/gossip/.

A systematic review of resilience and mental health outcomes of conflict-driven adult forced migrants

PubMed Central

2014-01-01

Background The rising global burden of forced migration due to armed conflict is increasingly recognised as an important issue in global health. Forced migrants are at a greater risk of developing mental disorders. However, resilience, defined as the ability of a person to successfully adapt to or recover from stressful and traumatic experiences, has been highlighted as a key potential protective factor. This study aimed to review systematically the global literature on the impact of resilience on the mental health of adult conflict-driven forced migrants. Methodology Both quantitative and qualitative studies that reported resilience and mental health outcomes among forcibly displaced persons (aged 18+) by way of exploring associations, links, pathways and causative mechanisms were included. Fourteen bibliographic databases and seven humanitarian study databases/websites were searched and a four stage screening process was followed. Results Twenty three studies were included in the final review. Ten qualitative studies identified highlighted family and community cohesion, family and community support, individual personal qualities, collective identity, supportive primary relationships and religion. Thirteen quantitative studies were identified, but only two attempted to link resilience with mental disorders, and three used a specific resilience measure. Over-reliance on cross-sectional designs was noted. Resilience was generally shown to be associated with better mental health in displaced populations, but the evidence on this and underlying mechanisms was limited. Discussion The review highlights the need for more epidemiological and qualitative evidence on resilience in forcibly displaced persons as a potential avenue for intervention development, particularly in resource-poor settings. PMID:25177360

ADAM-M Data and Information

Atmospheric Science Data Center

2017-05-11

... Information Creating a Unified Airborne Database for Assessment and Validation of Global Models of Atmospheric ...  (3)  To generate a standardized in-situ observational database with best possible matching temporal and spatial scales to model ...

21 CFR 830.340 - Voluntary submission of ancillary device identification information.

Code of Federal Regulations, 2014 CFR

2014-04-01

... Identification Database § 830.340 Voluntary submission of ancillary device identification information. (a) You may not submit any information to the Global Unique Device Identification Database (GUDID) other than...

Towards a global historical emission inventory for selected PCB congeners--a mass balance approach 3. An update.

PubMed

Breivik, Knut; Sweetman, Andy; Pacyna, Jozef M; Jones, Kevin C

2007-05-15

Previously published estimates of the global production, consumption and atmospheric emissions of 22 individual PCB congeners [Breivik K, Sweetman A, Pacyna JM, Jones KC. Towards a global historical emission inventory for selected PCB congeners - a mass balance approach. 1. Global production and consumption. Sci Total Environ 2002a; 290: 181-198.; Breivik K, Sweetman A, Pacyna JM, Jones KC. Towards a global historical emission inventory for selected PCB congeners--a mass balance approach. 2. Emissions. Sci Total Environ 2002b; 290: 181-198.] have provided useful information for later studies attempting to interpret contaminant levels in remote areas as well as in the global environment. As a result of the need for more contemporary emission data (following the year 2000), an update of this emission database is presented. This exercise takes into account new information on PCB production in Poland, as well as new data on the chemical composition of various technical mixtures for which less information had been available. The methodology to estimate temporal trends of PCB emissions associated with various types of PCB usage is improved. Projected emissions up to year 2100 are presented to facilitate predictions of future environmental exposure. The national emission data for each of the 114 countries considered is spatially resolved on a 1 degrees x1 degrees grid for each congener and year, using population density as a surrogate.

Scheduled Civil Aircraft Emission Inventories for 1999: Database Development and Analysis

NASA Technical Reports Server (NTRS)

Sutkus, Donald J., Jr.; Baughcum, Steven L.; DuBois, Douglas P.

2001-01-01

This report describes the development of a three-dimensional database of aircraft fuel burn and emissions (NO(x), CO, and hydrocarbons) for the scheduled commercial aircraft fleet for each month of 1999. Global totals of emissions and fuel burn for 1999 are compared to global totals from 1992 and 2015 databases. 1999 fuel burn, departure and distance totals for selected airlines are compared to data reported on DOT Form 41 to evaluate the accuracy of the calculations. DOT Form T-100 data were used to determine typical payloads for freighter aircraft and this information was used to model freighter aircraft more accurately by using more realistic payloads. Differences in the calculation methodology used to create the 1999 fuel burn and emissions database from the methodology used in previous work are described and evaluated.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

PubMed

Wang, Mingxun; Carver, Jeremy J; Phelan, Vanessa V; Sanchez, Laura M; Garg, Neha; Peng, Yao; Nguyen, Don Duy; Watrous, Jeramie; Kapono, Clifford A; Luzzatto-Knaan, Tal; Porto, Carla; Bouslimani, Amina; Melnik, Alexey V; Meehan, Michael J; Liu, Wei-Ting; Crüsemann, Max; Boudreau, Paul D; Esquenazi, Eduardo; Sandoval-Calderón, Mario; Kersten, Roland D; Pace, Laura A; Quinn, Robert A; Duncan, Katherine R; Hsu, Cheng-Chih; Floros, Dimitrios J; Gavilan, Ronnie G; Kleigrewe, Karin; Northen, Trent; Dutton, Rachel J; Parrot, Delphine; Carlson, Erin E; Aigle, Bertrand; Michelsen, Charlotte F; Jelsbak, Lars; Sohlenkamp, Christian; Pevzner, Pavel; Edlund, Anna; McLean, Jeffrey; Piel, Jörn; Murphy, Brian T; Gerwick, Lena; Liaw, Chih-Chuang; Yang, Yu-Liang; Humpf, Hans-Ulrich; Maansson, Maria; Keyzers, Robert A; Sims, Amy C; Johnson, Andrew R; Sidebottom, Ashley M; Sedio, Brian E; Klitgaard, Andreas; Larson, Charles B; P, Cristopher A Boya; Torres-Mendoza, Daniel; Gonzalez, David J; Silva, Denise B; Marques, Lucas M; Demarque, Daniel P; Pociute, Egle; O'Neill, Ellis C; Briand, Enora; Helfrich, Eric J N; Granatosky, Eve A; Glukhov, Evgenia; Ryffel, Florian; Houson, Hailey; Mohimani, Hosein; Kharbush, Jenan J; Zeng, Yi; Vorholt, Julia A; Kurita, Kenji L; Charusanti, Pep; McPhail, Kerry L; Nielsen, Kristian Fog; Vuong, Lisa; Elfeki, Maryam; Traxler, Matthew F; Engene, Niclas; Koyama, Nobuhiro; Vining, Oliver B; Baric, Ralph; Silva, Ricardo R; Mascuch, Samantha J; Tomasi, Sophie; Jenkins, Stefan; Macherla, Venkat; Hoffman, Thomas; Agarwal, Vinayak; Williams, Philip G; Dai, Jingqui; Neupane, Ram; Gurr, Joshua; Rodríguez, Andrés M C; Lamsa, Anne; Zhang, Chen; Dorrestein, Kathleen; Duggan, Brendan M; Almaliti, Jehad; Allard, Pierre-Marie; Phapale, Prasad; Nothias, Louis-Felix; Alexandrov, Theodore; Litaudon, Marc; Wolfender, Jean-Luc; Kyle, Jennifer E; Metz, Thomas O; Peryea, Tyler; Nguyen, Dac-Trung; VanLeer, Danielle; Shinn, Paul; Jadhav, Ajit; Müller, Rolf; Waters, Katrina M; Shi, Wenyuan; Liu, Xueting; Zhang, Lixin; Knight, Rob; Jensen, Paul R; Palsson, Bernhard O; Pogliano, Kit; Linington, Roger G; Gutiérrez, Marcelino; Lopes, Norberto P; Gerwick, William H; Moore, Bradley S; Dorrestein, Pieter C; Bandeira, Nuno

2016-08-09

The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not searchable with raw data and the NP community has no way to share data other than in published papers. Although mass spectrometry (MS) techniques are well-suited to high-throughput characterization of NP, there is a pressing need for an infrastructure to enable sharing and curation of data. We present Global Natural Products Social Molecular Networking (GNPS; http://gnps.ucsd.edu), an open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations. Data-driven social-networking should facilitate identification of spectra and foster collaborations. We also introduce the concept of 'living data' through continuous reanalysis of deposited data.

Monitoring of stability of ASG-EUPOS network coordinates

NASA Astrophysics Data System (ADS)

Figurski, M.; Szafranek, K.; Wrona, M.

2009-04-01

ASG-EUPOS (Active Geodetic Network - European Position Determination System) is the national system of precise satellite positioning in Poland, which increases a density of regional and global GNSS networks and is widely used by public administration, national institutions, entrepreneurs and citizens (especially surveyors). In near future ASG-EUPOS is to take role of main national network. Control of proper activity of stations and realization of ETRS'89 is a necessity. User of the system needs to be sure that observations quality and coordinates accuracy are high enough. Coordinates of IGS (International GNSS Service) and EPN (European Permanent Network) stations are precisely determined and any changes are monitored all the time. Observations are verified before they are archived in regional and global databases. The same applies to ASG-EUPOS. This paper concerns standardization of GNSS observations from different stations (uniform adjustment), examination of solutions correctness according to IGS and EPN standards and stability of solutions and sites activity

An approach to regional wetland digital elevation model development using a differential global positioning system and a custom-built helicopter-based surveying system

USGS Publications Warehouse

Jones, J.W.; Desmond, G.B.; Henkle, C.; Glover, R.

2012-01-01

Accurate topographic data are critical to restoration science and planning for the Everglades region of South Florida, USA. They are needed to monitor and simulate water level, water depth and hydroperiod and are used in scientific research on hydrologic and biologic processes. Because large wetland environments and data acquisition challenge conventional ground-based and remotely sensed data collection methods, the United States Geological Survey (USGS) adapted a classical data collection instrument to global positioning system (GPS) and geographic information system (GIS) technologies. Data acquired with this instrument were processed using geostatistics to yield sub-water level elevation values with centimetre accuracy (??15 cm). The developed database framework, modelling philosophy and metadata protocol allow for continued, collaborative model revision and expansion, given additional elevation or other ancillary data. ?? 2012 Taylor & Francis.

Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy.

PubMed

Misra, Namrata; Panda, Prasanna Kumar; Parida, Bikram Kumar

2013-11-01

Microalgal biofuels offer great promise in contributing to the growing global demand for alternative sources of renewable energy. However, to make algae-based fuels cost competitive with petroleum, lipid production capabilities of microalgae need to improve substantially. Recent progress in algal genomics, in conjunction with other "omic" approaches, has accelerated the ability to identify metabolic pathways and genes that are potential targets in the development of genetically engineered microalgal strains with optimum lipid content. In this review, we summarize the current bioeconomic status of global biofuel feedstocks with particular reference to the role of "omics" in optimizing sustainable biofuel production. We also provide an overview of the various databases and bioinformatics resources available to gain a more complete understanding of lipid metabolism across algal species, along with the recent contributions of "omic" approaches in the metabolic pathway studies for microalgal biofuel production.

Satellite Imagery Assisted Road-Based Visual Navigation System

NASA Astrophysics Data System (ADS)

Volkova, A.; Gibbens, P. W.

2016-06-01

There is a growing demand for unmanned aerial systems as autonomous surveillance, exploration and remote sensing solutions. Among the key concerns for robust operation of these systems is the need to reliably navigate the environment without reliance on global navigation satellite system (GNSS). This is of particular concern in Defence circles, but is also a major safety issue for commercial operations. In these circumstances, the aircraft needs to navigate relying only on information from on-board passive sensors such as digital cameras. An autonomous feature-based visual system presented in this work offers a novel integral approach to the modelling and registration of visual features that responds to the specific needs of the navigation system. It detects visual features from Google Earth* build a feature database. The same algorithm then detects features in an on-board cameras video stream. On one level this serves to localise the vehicle relative to the environment using Simultaneous Localisation and Mapping (SLAM). On a second level it correlates them with the database to localise the vehicle with respect to the inertial frame. The performance of the presented visual navigation system was compared using the satellite imagery from different years. Based on comparison results, an analysis of the effects of seasonal, structural and qualitative changes of the imagery source on the performance of the navigation algorithm is presented. * The algorithm is independent of the source of satellite imagery and another provider can be used

Data resource profile: United Nations Children's Fund (UNICEF).

PubMed

Murray, Colleen; Newby, Holly

2012-12-01

The United Nations Children's Fund (UNICEF) plays a leading role in the collection, compilation, analysis and dissemination of data to inform sound policies, legislation and programmes for promoting children's rights and well-being, and for global monitoring of progress towards the Millennium Development Goals. UNICEF maintains a set of global databases representing nearly 200 countries and covering the areas of child mortality, child health, maternal health, nutrition, immunization, water and sanitation, HIV/AIDS, education and child protection. These databases consist of internationally comparable and statistically sound data, and are updated annually through a process that draws on a wealth of data provided by UNICEF's wide network of >150 field offices. The databases are composed primarily of estimates from household surveys, with data from censuses, administrative records, vital registration systems and statistical models contributing to some key indicators as well. The data are assessed for quality based on a set of objective criteria to ensure that only the most reliable nationally representative information is included. For most indicators, data are available at the global, regional and national levels, plus sub-national disaggregation by sex, urban/rural residence and household wealth. The global databases are featured in UNICEF's flagship publications, inter-agency reports, including the Secretary General's Millennium Development Goals Report and Countdown to 2015, sector-specific reports and statistical country profiles. They are also publicly available on www.childinfo.org, together with trend data and equity analyses.

Developed-developing country partnerships: benefits to developed countries?

PubMed

Syed, Shamsuzzoha B; Dadwal, Viva; Rutter, Paul; Storr, Julie; Hightower, Joyce D; Gooden, Rachel; Carlet, Jean; Bagheri Nejad, Sepideh; Kelley, Edward T; Donaldson, Liam; Pittet, Didier

2012-06-18

Developing countries can generate effective solutions for today's global health challenges. This paper reviews relevant literature to construct the case for international cooperation, and in particular, developed-developing country partnerships. Standard database and web-based searches were conducted for publications in English between 1990 and 2010. Studies containing full or partial data relating to international cooperation between developed and developing countries were retained for further analysis. Of 227 articles retained through initial screening, 65 were included in the final analysis. The results were two-fold: some articles pointed to intangible benefits accrued by developed country partners, but the majority of information pointed to developing country innovations that can potentially inform health systems in developed countries. This information spanned all six WHO health system components. Ten key health areas where developed countries have the most to learn from the developing world were identified and include, rural health service delivery; skills substitution; decentralisation of management; creative problem-solving; education in communicable disease control; innovation in mobile phone use; low technology simulation training; local product manufacture; health financing; and social entrepreneurship. While there are no guarantees that innovations from developing country experiences can effectively transfer to developed countries, combined developed-developing country learning processes can potentially generate effective solutions for global health systems. However, the global pool of knowledge in this area is virgin and further work needs to be undertaken to advance understanding of health innovation diffusion. Even more urgently, a standardized method for reporting partnership benefits is needed--this is perhaps the single most immediate need in planning for, and realizing, the full potential of international cooperation between developed and developing countries.

Searching for Controlled Trials of Complementary and Alternative Medicine: A Comparison of 15 Databases

PubMed Central

Cogo, Elise; Sampson, Margaret; Ajiferuke, Isola; Manheimer, Eric; Campbell, Kaitryn; Daniel, Raymond; Moher, David

2011-01-01

This project aims to assess the utility of bibliographic databases beyond the three major ones (MEDLINE, EMBASE and Cochrane CENTRAL) for finding controlled trials of complementary and alternative medicine (CAM). Fifteen databases were searched to identify controlled clinical trials (CCTs) of CAM not also indexed in MEDLINE. Searches were conducted in May 2006 using the revised Cochrane highly sensitive search strategy (HSSS) and the PubMed CAM Subset. Yield of CAM trials per 100 records was determined, and databases were compared over a standardized period (2005). The Acudoc2 RCT, Acubriefs, Index to Chiropractic Literature (ICL) and Hom-Inform databases had the highest concentrations of non-MEDLINE records, with more than 100 non-MEDLINE records per 500. Other productive databases had ratios between 500 and 1500 records to 100 non-MEDLINE records—these were AMED, MANTIS, PsycINFO, CINAHL, Global Health and Alt HealthWatch. Five databases were found to be unproductive: AGRICOLA, CAIRSS, Datadiwan, Herb Research Foundation and IBIDS. Acudoc2 RCT yielded 100 CAM trials in the most recent 100 records screened. Acubriefs, AMED, Hom-Inform, MANTIS, PsycINFO and CINAHL had more than 25 CAM trials per 100 records screened. Global Health, ICL and Alt HealthWatch were below 25 in yield. There were 255 non-MEDLINE trials from eight databases in 2005, with only 10% indexed in more than one database. Yield varied greatly between databases; the most productive databases from both sampling methods were Acubriefs, Acudoc2 RCT, AMED and CINAHL. Low overlap between databases indicates comprehensive CAM literature searches will require multiple databases. PMID:19468052

Searching for controlled trials of complementary and alternative medicine: a comparison of 15 databases.

PubMed

Cogo, Elise; Sampson, Margaret; Ajiferuke, Isola; Manheimer, Eric; Campbell, Kaitryn; Daniel, Raymond; Moher, David

2011-01-01

This project aims to assess the utility of bibliographic databases beyond the three major ones (MEDLINE, EMBASE and Cochrane CENTRAL) for finding controlled trials of complementary and alternative medicine (CAM). Fifteen databases were searched to identify controlled clinical trials (CCTs) of CAM not also indexed in MEDLINE. Searches were conducted in May 2006 using the revised Cochrane highly sensitive search strategy (HSSS) and the PubMed CAM Subset. Yield of CAM trials per 100 records was determined, and databases were compared over a standardized period (2005). The Acudoc2 RCT, Acubriefs, Index to Chiropractic Literature (ICL) and Hom-Inform databases had the highest concentrations of non-MEDLINE records, with more than 100 non-MEDLINE records per 500. Other productive databases had ratios between 500 and 1500 records to 100 non-MEDLINE records-these were AMED, MANTIS, PsycINFO, CINAHL, Global Health and Alt HealthWatch. Five databases were found to be unproductive: AGRICOLA, CAIRSS, Datadiwan, Herb Research Foundation and IBIDS. Acudoc2 RCT yielded 100 CAM trials in the most recent 100 records screened. Acubriefs, AMED, Hom-Inform, MANTIS, PsycINFO and CINAHL had more than 25 CAM trials per 100 records screened. Global Health, ICL and Alt HealthWatch were below 25 in yield. There were 255 non-MEDLINE trials from eight databases in 2005, with only 10% indexed in more than one database. Yield varied greatly between databases; the most productive databases from both sampling methods were Acubriefs, Acudoc2 RCT, AMED and CINAHL. Low overlap between databases indicates comprehensive CAM literature searches will require multiple databases.

Virtual Global Magnetic Observatory - Concept and Implementation

NASA Astrophysics Data System (ADS)

Papitashvili, V.; Clauer, R.; Petrov, V.; Saxena, A.

2002-12-01

The existing World Data Centers (WDC) continue to serve excellently the worldwide scientific community in providing free access to a huge number of global geophysical databases. Various institutions at different geographic locations house these Centers, mainly organized by a scientific discipline. However, population of the Centers requires mandatory or voluntary submission of locally collected data. Recently many digital geomagnetic datasets have been placed on the World Wide Web and some of these sets have not been even submitted to any data center. This has created an urgent need for more sophisticated search engines capable of identifying geomagnetic data on the Web and then retrieving a certain amount of data for the scientific analysis. In this study, we formulate a concept of the virtual global magnetic observatory (VGMO) that currently uses a pre-set list of the Web-based geomagnetic data holders (including WDC) as retrieving a requested case-study interval. Saving the retrieved data locally over the multiple requests, a VGMO user begins to build his/her own data sub-center, which does not need to search the Web if the newly requested interval will be within a span of the earlier retrieved data. At the same time, this self-populated sub-center becomes available to other VGMO users down on the requests chain. Some aspects of the Web``crawling'' helping to identify the newly ``webbed'' digital geomagnetic data are also considered.

Arabidopsis Gene Family Profiler (aGFP)--user-oriented transcriptomic database with easy-to-use graphic interface.

PubMed

Dupl'áková, Nikoleta; Renák, David; Hovanec, Patrik; Honysová, Barbora; Twell, David; Honys, David

2007-07-23

Microarray technologies now belong to the standard functional genomics toolbox and have undergone massive development leading to increased genome coverage, accuracy and reliability. The number of experiments exploiting microarray technology has markedly increased in recent years. In parallel with the rapid accumulation of transcriptomic data, on-line analysis tools are being introduced to simplify their use. Global statistical data analysis methods contribute to the development of overall concepts about gene expression patterns and to query and compose working hypotheses. More recently, these applications are being supplemented with more specialized products offering visualization and specific data mining tools. We present a curated gene family-oriented gene expression database, Arabidopsis Gene Family Profiler (aGFP; http://agfp.ueb.cas.cz), which gives the user access to a large collection of normalised Affymetrix ATH1 microarray datasets. The database currently contains NASC Array and AtGenExpress transcriptomic datasets for various tissues at different developmental stages of wild type plants gathered from nearly 350 gene chips. The Arabidopsis GFP database has been designed as an easy-to-use tool for users needing an easily accessible resource for expression data of single genes, pre-defined gene families or custom gene sets, with the further possibility of keyword search. Arabidopsis Gene Family Profiler presents a user-friendly web interface using both graphic and text output. Data are stored at the MySQL server and individual queries are created in PHP script. The most distinguishable features of Arabidopsis Gene Family Profiler database are: 1) the presentation of normalized datasets (Affymetrix MAS algorithm and calculation of model-based gene-expression values based on the Perfect Match-only model); 2) the choice between two different normalization algorithms (Affymetrix MAS4 or MAS5 algorithms); 3) an intuitive interface; 4) an interactive "virtual plant" visualizing the spatial and developmental expression profiles of both gene families and individual genes. Arabidopsis GFP gives users the possibility to analyze current Arabidopsis developmental transcriptomic data starting with simple global queries that can be expanded and further refined to visualize comparative and highly selective gene expression profiles.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.

PubMed

Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; Yamaguchi, Atsuko; Kawashima, Shuichi; Chun, Hong-Woo; Aerts, Jan; Aranda, Bruno; Barboza, Lord Hendrix; Bonnal, Raoul Jp; Bruskiewich, Richard; Bryne, Jan C; Fernández, José M; Funahashi, Akira; Gordon, Paul Mk; Goto, Naohisa; Groscurth, Andreas; Gutteridge, Alex; Holland, Richard; Kano, Yoshinobu; Kawas, Edward A; Kerhornou, Arnaud; Kibukawa, Eri; Kinjo, Akira R; Kuhn, Michael; Lapp, Hilmar; Lehvaslaiho, Heikki; Nakamura, Hiroyuki; Nakamura, Yasukazu; Nishizawa, Tatsuya; Nobata, Chikashi; Noguchi, Tamotsu; Oinn, Thomas M; Okamoto, Shinobu; Owen, Stuart; Pafilis, Evangelos; Pocock, Matthew; Prins, Pjotr; Ranzinger, René; Reisinger, Florian; Salwinski, Lukasz; Schreiber, Mark; Senger, Martin; Shigemoto, Yasumasa; Standley, Daron M; Sugawara, Hideaki; Tashiro, Toshiyuki; Trelles, Oswaldo; Vos, Rutger A; Wilkinson, Mark D; York, William; Zmasek, Christian M; Asai, Kiyoshi; Takagi, Toshihisa

2010-08-21

Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire databases for every step of an analysis. However, various incompatibilities among database resources and analysis services make it difficult to connect and integrate these into interoperable workflows. To resolve this situation, we invited domain specialists from web service providers, client software developers, Open Bio* projects, the BioMoby project and researchers of emerging areas where a standard exchange data format is not well established, for an intensive collaboration entitled the BioHackathon 2008. The meeting was hosted by the Database Center for Life Science (DBCLS) and Computational Biology Research Center (CBRC) and was held in Tokyo from February 11th to 15th, 2008. In this report we highlight the work accomplished and the common issues arisen from this event, including the standardization of data exchange formats and services in the emerging fields of glycoinformatics, biological interaction networks, text mining, and phyloinformatics. In addition, common shared object development based on BioSQL, as well as technical challenges in large data management, asynchronous services, and security are discussed. Consequently, we improved interoperability of web services in several fields, however, further cooperation among major database centers and continued collaborative efforts between service providers and software developers are still necessary for an effective advance in bioinformatics web service technologies.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

PubMed Central

2010-01-01

Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire databases for every step of an analysis. However, various incompatibilities among database resources and analysis services make it difficult to connect and integrate these into interoperable workflows. To resolve this situation, we invited domain specialists from web service providers, client software developers, Open Bio* projects, the BioMoby project and researchers of emerging areas where a standard exchange data format is not well established, for an intensive collaboration entitled the BioHackathon 2008. The meeting was hosted by the Database Center for Life Science (DBCLS) and Computational Biology Research Center (CBRC) and was held in Tokyo from February 11th to 15th, 2008. In this report we highlight the work accomplished and the common issues arisen from this event, including the standardization of data exchange formats and services in the emerging fields of glycoinformatics, biological interaction networks, text mining, and phyloinformatics. In addition, common shared object development based on BioSQL, as well as technical challenges in large data management, asynchronous services, and security are discussed. Consequently, we improved interoperability of web services in several fields, however, further cooperation among major database centers and continued collaborative efforts between service providers and software developers are still necessary for an effective advance in bioinformatics web service technologies. PMID:20727200

The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project.

PubMed

Hudson, Lawrence N; Newbold, Tim; Contu, Sara; Hill, Samantha L L; Lysenko, Igor; De Palma, Adriana; Phillips, Helen R P; Alhusseini, Tamera I; Bedford, Felicity E; Bennett, Dominic J; Booth, Hollie; Burton, Victoria J; Chng, Charlotte W T; Choimes, Argyrios; Correia, David L P; Day, Julie; Echeverría-Londoño, Susy; Emerson, Susan R; Gao, Di; Garon, Morgan; Harrison, Michelle L K; Ingram, Daniel J; Jung, Martin; Kemp, Victoria; Kirkpatrick, Lucinda; Martin, Callum D; Pan, Yuan; Pask-Hale, Gwilym D; Pynegar, Edwin L; Robinson, Alexandra N; Sanchez-Ortiz, Katia; Senior, Rebecca A; Simmons, Benno I; White, Hannah J; Zhang, Hanbin; Aben, Job; Abrahamczyk, Stefan; Adum, Gilbert B; Aguilar-Barquero, Virginia; Aizen, Marcelo A; Albertos, Belén; Alcala, E L; Del Mar Alguacil, Maria; Alignier, Audrey; Ancrenaz, Marc; Andersen, Alan N; Arbeláez-Cortés, Enrique; Armbrecht, Inge; Arroyo-Rodríguez, Víctor; Aumann, Tom; Axmacher, Jan C; Azhar, Badrul; Azpiroz, Adrián B; Baeten, Lander; Bakayoko, Adama; Báldi, András; Banks, John E; Baral, Sharad K; Barlow, Jos; Barratt, Barbara I P; Barrico, Lurdes; Bartolommei, Paola; Barton, Diane M; Basset, Yves; Batáry, Péter; Bates, Adam J; Baur, Bruno; Bayne, Erin M; Beja, Pedro; Benedick, Suzan; Berg, Åke; Bernard, Henry; Berry, Nicholas J; Bhatt, Dinesh; Bicknell, Jake E; Bihn, Jochen H; Blake, Robin J; Bobo, Kadiri S; Bóçon, Roberto; Boekhout, Teun; Böhning-Gaese, Katrin; Bonham, Kevin J; Borges, Paulo A V; Borges, Sérgio H; Boutin, Céline; Bouyer, Jérémy; Bragagnolo, Cibele; Brandt, Jodi S; Brearley, Francis Q; Brito, Isabel; Bros, Vicenç; Brunet, Jörg; Buczkowski, Grzegorz; Buddle, Christopher M; Bugter, Rob; Buscardo, Erika; Buse, Jörn; Cabra-García, Jimmy; Cáceres, Nilton C; Cagle, Nicolette L; Calviño-Cancela, María; Cameron, Sydney A; Cancello, Eliana M; Caparrós, Rut; Cardoso, Pedro; Carpenter, Dan; Carrijo, Tiago F; Carvalho, Anelena L; Cassano, Camila R; Castro, Helena; Castro-Luna, Alejandro A; Rolando, Cerda B; Cerezo, Alexis; Chapman, Kim Alan; Chauvat, Matthieu; Christensen, Morten; Clarke, Francis M; Cleary, Daniel F R; Colombo, Giorgio; Connop, Stuart P; Craig, Michael D; Cruz-López, Leopoldo; Cunningham, Saul A; D'Aniello, Biagio; D'Cruze, Neil; da Silva, Pedro Giovâni; Dallimer, Martin; Danquah, Emmanuel; Darvill, Ben; Dauber, Jens; Davis, Adrian L V; Dawson, Jeff; de Sassi, Claudio; de Thoisy, Benoit; Deheuvels, Olivier; Dejean, Alain; Devineau, Jean-Louis; Diekötter, Tim; Dolia, Jignasu V; Domínguez, Erwin; Dominguez-Haydar, Yamileth; Dorn, Silvia; Draper, Isabel; Dreber, Niels; Dumont, Bertrand; Dures, Simon G; Dynesius, Mats; Edenius, Lars; Eggleton, Paul; Eigenbrod, Felix; Elek, Zoltán; Entling, Martin H; Esler, Karen J; de Lima, Ricardo F; Faruk, Aisyah; Farwig, Nina; Fayle, Tom M; Felicioli, Antonio; Felton, Annika M; Fensham, Roderick J; Fernandez, Ignacio C; Ferreira, Catarina C; Ficetola, Gentile F; Fiera, Cristina; Filgueiras, Bruno K C; Fırıncıoğlu, Hüseyin K; Flaspohler, David; Floren, Andreas; Fonte, Steven J; Fournier, Anne; Fowler, Robert E; Franzén, Markus; Fraser, Lauchlan H; Fredriksson, Gabriella M; Freire, Geraldo B; Frizzo, Tiago L M; Fukuda, Daisuke; Furlani, Dario; Gaigher, René; Ganzhorn, Jörg U; García, Karla P; Garcia-R, Juan C; Garden, Jenni G; Garilleti, Ricardo; Ge, Bao-Ming; Gendreau-Berthiaume, Benoit; Gerard, Philippa J; Gheler-Costa, Carla; Gilbert, Benjamin; Giordani, Paolo; Giordano, Simonetta; Golodets, Carly; Gomes, Laurens G L; Gould, Rachelle K; Goulson, Dave; Gove, Aaron D; Granjon, Laurent; Grass, Ingo; Gray, Claudia L; Grogan, James; Gu, Weibin; Guardiola, Moisès; Gunawardene, Nihara R; Gutierrez, Alvaro G; Gutiérrez-Lamus, Doris L; Haarmeyer, Daniela H; Hanley, Mick E; Hanson, Thor; Hashim, Nor R; Hassan, Shombe N; Hatfield, Richard G; Hawes, Joseph E; Hayward, Matt W; Hébert, Christian; Helden, Alvin J; Henden, John-André; Henschel, Philipp; Hernández, Lionel; Herrera, James P; Herrmann, Farina; Herzog, Felix; Higuera-Diaz, Diego; Hilje, Branko; Höfer, Hubert; Hoffmann, Anke; Horgan, Finbarr G; Hornung, Elisabeth; Horváth, Roland; Hylander, Kristoffer; Isaacs-Cubides, Paola; Ishida, Hiroaki; Ishitani, Masahiro; Jacobs, Carmen T; Jaramillo, Víctor J; Jauker, Birgit; Hernández, F Jiménez; Johnson, McKenzie F; Jolli, Virat; Jonsell, Mats; Juliani, S Nur; Jung, Thomas S; Kapoor, Vena; Kappes, Heike; Kati, Vassiliki; Katovai, Eric; Kellner, Klaus; Kessler, Michael; Kirby, Kathryn R; Kittle, Andrew M; Knight, Mairi E; Knop, Eva; Kohler, Florian; Koivula, Matti; Kolb, Annette; Kone, Mouhamadou; Kőrösi, Ádám; Krauss, Jochen; Kumar, Ajith; Kumar, Raman; Kurz, David J; Kutt, Alex S; Lachat, Thibault; Lantschner, Victoria; Lara, Francisco; Lasky, Jesse R; Latta, Steven C; Laurance, William F; Lavelle, Patrick; Le Féon, Violette; LeBuhn, Gretchen; Légaré, Jean-Philippe; Lehouck, Valérie; Lencinas, María V; Lentini, Pia E; Letcher, Susan G; Li, Qi; Litchwark, Simon A; Littlewood, Nick A; Liu, Yunhui; Lo-Man-Hung, Nancy; López-Quintero, Carlos A; Louhaichi, Mounir; Lövei, Gabor L; Lucas-Borja, Manuel Esteban; Luja, Victor H; Luskin, Matthew S; MacSwiney G, M Cristina; Maeto, Kaoru; Magura, Tibor; Mallari, Neil Aldrin; Malone, Louise A; Malonza, Patrick K; Malumbres-Olarte, Jagoba; Mandujano, Salvador; Måren, Inger E; Marin-Spiotta, Erika; Marsh, Charles J; Marshall, E J P; Martínez, Eliana; Martínez Pastur, Guillermo; Moreno Mateos, David; Mayfield, Margaret M; Mazimpaka, Vicente; McCarthy, Jennifer L; McCarthy, Kyle P; McFrederick, Quinn S; McNamara, Sean; Medina, Nagore G; Medina, Rafael; Mena, Jose L; Mico, Estefania; Mikusinski, Grzegorz; Milder, Jeffrey C; Miller, James R; Miranda-Esquivel, Daniel R; Moir, Melinda L; Morales, Carolina L; Muchane, Mary N; Muchane, Muchai; Mudri-Stojnic, Sonja; Munira, A Nur; Muoñz-Alonso, Antonio; Munyekenye, B F; Naidoo, Robin; Naithani, A; Nakagawa, Michiko; Nakamura, Akihiro; Nakashima, Yoshihiro; Naoe, Shoji; Nates-Parra, Guiomar; Navarrete Gutierrez, Dario A; Navarro-Iriarte, Luis; Ndang'ang'a, Paul K; Neuschulz, Eike L; Ngai, Jacqueline T; Nicolas, Violaine; Nilsson, Sven G; Noreika, Norbertas; Norfolk, Olivia; Noriega, Jorge Ari; Norton, David A; Nöske, Nicole M; Nowakowski, A Justin; Numa, Catherine; O'Dea, Niall; O'Farrell, Patrick J; Oduro, William; Oertli, Sabine; Ofori-Boateng, Caleb; Oke, Christopher Omamoke; Oostra, Vicencio; Osgathorpe, Lynne M; Otavo, Samuel Eduardo; Page, Navendu V; Paritsis, Juan; Parra-H, Alejandro; Parry, Luke; Pe'er, Guy; Pearman, Peter B; Pelegrin, Nicolás; Pélissier, Raphaël; Peres, Carlos A; Peri, Pablo L; Persson, Anna S; Petanidou, Theodora; Peters, Marcell K; Pethiyagoda, Rohan S; Phalan, Ben; Philips, T Keith; Pillsbury, Finn C; Pincheira-Ulbrich, Jimmy; Pineda, Eduardo; Pino, Joan; Pizarro-Araya, Jaime; Plumptre, A J; Poggio, Santiago L; Politi, Natalia; Pons, Pere; Poveda, Katja; Power, Eileen F; Presley, Steven J; Proença, Vânia; Quaranta, Marino; Quintero, Carolina; Rader, Romina; Ramesh, B R; Ramirez-Pinilla, Martha P; Ranganathan, Jai; Rasmussen, Claus; Redpath-Downing, Nicola A; Reid, J Leighton; Reis, Yana T; Rey Benayas, José M; Rey-Velasco, Juan Carlos; Reynolds, Chevonne; Ribeiro, Danilo Bandini; Richards, Miriam H; Richardson, Barbara A; Richardson, Michael J; Ríos, Rodrigo Macip; Robinson, Richard; Robles, Carolina A; Römbke, Jörg; Romero-Duque, Luz Piedad; Rös, Matthias; Rosselli, Loreta; Rossiter, Stephen J; Roth, Dana S; Roulston, T'ai H; Rousseau, Laurent; Rubio, André V; Ruel, Jean-Claude; Sadler, Jonathan P; Sáfián, Szabolcs; Saldaña-Vázquez, Romeo A; Sam, Katerina; Samnegård, Ulrika; Santana, Joana; Santos, Xavier; Savage, Jade; Schellhorn, Nancy A; Schilthuizen, Menno; Schmiedel, Ute; Schmitt, Christine B; Schon, Nicole L; Schüepp, Christof; Schumann, Katharina; Schweiger, Oliver; Scott, Dawn M; Scott, Kenneth A; Sedlock, Jodi L; Seefeldt, Steven S; Shahabuddin, Ghazala; Shannon, Graeme; Sheil, Douglas; Sheldon, Frederick H; Shochat, Eyal; Siebert, Stefan J; Silva, Fernando A B; Simonetti, Javier A; Slade, Eleanor M; Smith, Jo; Smith-Pardo, Allan H; Sodhi, Navjot S; Somarriba, Eduardo J; Sosa, Ramón A; Soto Quiroga, Grimaldo; St-Laurent, Martin-Hugues; Starzomski, Brian M; Stefanescu, Constanti; Steffan-Dewenter, Ingolf; Stouffer, Philip C; Stout, Jane C; Strauch, Ayron M; Struebig, Matthew J; Su, Zhimin; Suarez-Rubio, Marcela; Sugiura, Shinji; Summerville, Keith S; Sung, Yik-Hei; Sutrisno, Hari; Svenning, Jens-Christian; Teder, Tiit; Threlfall, Caragh G; Tiitsaar, Anu; Todd, Jacqui H; Tonietto, Rebecca K; Torre, Ignasi; Tóthmérész, Béla; Tscharntke, Teja; Turner, Edgar C; Tylianakis, Jason M; Uehara-Prado, Marcio; Urbina-Cardona, Nicolas; Vallan, Denis; Vanbergen, Adam J; Vasconcelos, Heraldo L; Vassilev, Kiril; Verboven, Hans A F; Verdasca, Maria João; Verdú, José R; Vergara, Carlos H; Vergara, Pablo M; Verhulst, Jort; Virgilio, Massimiliano; Vu, Lien Van; Waite, Edward M; Walker, Tony R; Wang, Hua-Feng; Wang, Yanping; Watling, James I; Weller, Britta; Wells, Konstans; Westphal, Catrin; Wiafe, Edward D; Williams, Christopher D; Willig, Michael R; Woinarski, John C Z; Wolf, Jan H D; Wolters, Volkmar; Woodcock, Ben A; Wu, Jihua; Wunderle, Joseph M; Yamaura, Yuichi; Yoshikura, Satoko; Yu, Douglas W; Zaitsev, Andrey S; Zeidler, Juliane; Zou, Fasheng; Collen, Ben; Ewers, Rob M; Mace, Georgina M; Purves, Drew W; Scharlemann, Jörn P W; Purvis, Andy

2017-01-01

The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.

Global land information system (GLIS) access to worldwide Landsat data

USGS Publications Warehouse

Smith, Timothy B.; Goodale, Katherine L.

1993-01-01

The Landsat Technical Working Group (LTWG) and the Landsat Ground Station Operations Working Group (LGSOWG) have encouraged Landsat receiving stations around the world to share information about their data holdings through the exchange of metadata records. Receiving stations forward their metadata records to the U.S. Geological Survey's EROS Data Center (EDC) on a quarterly basis. The EDC maintains the records for each station, coordinates changes to the database, and provides metadata to the stations as requested. The result is a comprehensive international database listing most of the world's Landsat data acquisitions This exchange of information began in the early 1980's with the inclusion in the EDC database os scenes acquired by a receiving station in Italy. Through the years other stations have agreed to participate; currently ten of the seventeen stations actively share their metadata records. Coverage maps have been generated to depict the status of the database. The Worldwide Landsat database is also available though the Global Land Information System (GLIS).

NASA MEaSUREs Combined ASTER and MODIS Emissivity over Land (CAMEL)

NASA Astrophysics Data System (ADS)

Borbas, E. E.; Hulley, G. C.; Feltz, M.; Knuteson, R. O.; Hook, S. J.

2016-12-01

A land surface emissivity product of the NASA MEASUREs project called Combined ASTER and MODIS Emissivity over Land (CAMEL) is being made available as part of the Unified and Coherent Land Surface Temperature and Emissivity (LST&E) Earth System Data Record (ESDR). The CAMEL database has been created by merging the UW MODIS-based baseline-fit emissivity database (UWIREMIS) developed at the University of Wisconsin-Madison, and the ASTER Global Emissivity Database (ASTER GED V4) produced at JPL. This poster will introduce the beta version of the database, which is available globally for the period 2003 through 2015 at 5km in mean monthly time-steps and for 13 bands from 3.6-14.3 micron. An algorithm to create a high spectral emissivity on 417 wavenumbers is also provided for high spectral IR applications. On the poster the CAMEL database has been evaluated with the IASI Emissivity Atlas (Zhou et al, 2010) and laboratory measurements, and also through simulation of IASI BTs in the RTTOV Forward model.

A multidisciplinary database for global distribution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolfe, P.J.

The issue of selenium toxicity in the environment has been documented in the scientific literature for over 50 years. Recent studies reveal a complex connection between selenium and human and animal populations. This article introduces a bibliographic citation database on selenium in the environment developed for global distribution via the Internet by the University of Wyoming Libraries. The database incorporates material from commercial sources, print abstracts, indexes, and U.S. government literature, resulting in a multidisciplinary resource. Relevant disciplines include, biology, medicine, veterinary science, botany, chemistry, geology, pollution, aquatic sciences, ecology, and others. It covers the years 1985-1996 for most subjectmore » material, with additional years being added as resources permit.« less

‘BRICS without straw’? A systematic literature review of newly emerging economies’ influence in global health

PubMed Central

2013-01-01

Background Since 2010, five newly emerging economies collectively known as ‘BRICS’ (Brazil, India, Russia, China and South Africa) have caught the imagination, and scholarly attention, of political scientists, economists and development specialists. The prospect of a unified geopolitical bloc, consciously seeking to re-frame international (and global) health development with a new set of ideas and values, has also, if belatedly, begun to attract the attention of the global health community. But what influence, if any, do the BRICS wield in global health, and, if they do wield influence, how has that influence been conceptualized and recorded in the literature? Methods We conducted a systematic literature review in (March-December 2012) of documents retrieved from the databases EMBASE, PubMed/Medline, Global Health, and Google Scholar, and the websites of relevant international organisations, research institutions and philanthropic organisations. The results were synthesised using a framework of influence developed for the review from the political science literature. Results Our initial search of databases and websites yielded 887 documents. Exclusion criteria narrowed the number of documents to 71 journal articles and 23 reports. Two researchers using an agreed set of inclusion criteria independently screened the 94 documents, leaving just 7 documents. We found just one document that provided sustained analysis of the BRICS’ collective influence; the overwhelming tendency was to describe individual BRICS countries influence. Although influence was predominantly framed by BRICS countries’ material capability, there were examples of institutional and ideational influence - particularly from Brazil. Individual BRICS countries were primarily ‘opportunity seekers’ and region mobilisers but with potential to become ‘issue leaders’ and region organisers. Conclusion Though small in number, the written output on BRICS influence in global health has increased significantly since a similar review conducted in 2010 found just one study. Whilst it may still be ‘early days’ for newly-emerging economies influence in global health to have matured, we argue that there is scope to further develop the concept of influence in global health, but also to better understand the ontology of groups of countries such as BRICS. The BRICS have made a number of important commitments towards reforming global health, but if they are to be more than a memorable acronym they need to start putting those collective commitments into action. Keywords BRICS, global health, influence, newly emerging economies, Brazil, Russia, India, China, South Africa. PMID:23587342

International LCA

EPA Science Inventory

To provide global guidance on the establishment and maintenance of LCA databases, as the basis for improved dataset exchangeability and interlinkages of databases worldwide. Increase the credibility of existing LCA data, the generation of more data and their overall accessibilit...

Electric power and the global economy: Advances in database construction and sector representation

NASA Astrophysics Data System (ADS)

Peters, Jeffrey C.

The electricity sector plays a crucial role in the global economy. The sector is a major consumer of fossil fuel resources, producer of greenhouse gas emissions, and an important indicator and correlate of economic development. As such, the sector is a primary target for policy-makers seeking to address these issues. The sector is also experiencing rapid technological change in generation (e.g. renewables), primary inputs (e.g. horizontal drilling and hydraulic fracturing), and end-use efficiency. This dissertation seeks to further our understanding of the role of the electricity sector as part of the dynamic global energy-economy, which requires significant research advances in both database construction and modeling techniques. Chapter 2 identifies useful engineering-level data and presents a novel matrix balancing method for integrating these data in global economic databases. Chapter 3 demonstrates the relationship between matrix balancing method and modeling results, and Chapter 4 presents the full construction methodology for GTAP-Power, the foremost, publicly-available global computable general equilibrium database. Chapter 5 presents an electricity-detailed computational equilibrium model that explicitly and endogenously captures capacity utilization, capacity expansion, and their interdependency - important aspects of technological substitution in the electricity sector. The individual, but interrelated, research contributions to database construction and electricity modeling in computational equilibrium are placed in the context of analyzing the US EPA Clean Power Plan (CPP) CO 2 target of 32 percent reduction of CO2 emissions in the US electricity sector from a 2005 baseline by 2030. Assuming current fuel prices, the model predicts an almost 28 percent CO2 reduction without further policy intervention. Next, a carbon tax and investment subsidies for renewable technologies to meet the CPP full targets are imposed and compared (Chapter 6). The carbon tax achieves the target via both utilization and expansion, while the renewable investment subsidies lead to over-expansion and compromises some of the possibilities via utilization. In doing so, this dissertation furthers our understanding of the role of the electricity sector as part of the dynamic global energy-economy.

An Information System for European culture collections: the way forward.

PubMed

Casaregola, Serge; Vasilenko, Alexander; Romano, Paolo; Robert, Vincent; Ozerskaya, Svetlana; Kopf, Anna; Glöckner, Frank O; Smith, David

2016-01-01

Culture collections contain indispensable information about the microorganisms preserved in their repositories, such as taxonomical descriptions, origins, physiological and biochemical characteristics, bibliographic references, etc. However, information currently accessible in databases rarely adheres to common standard protocols. The resultant heterogeneity between culture collections, in terms of both content and format, notably hampers microorganism-based research and development (R&D). The optimized exploitation of these resources thus requires standardized, and simplified, access to the associated information. To this end, and in the interest of supporting R&D in the fields of agriculture, health and biotechnology, a pan-European distributed research infrastructure, MIRRI, including over 40 public culture collections and research institutes from 19 European countries, was established. A prime objective of MIRRI is to unite and provide universal access to the fragmented, and untapped, resources, information and expertise available in European public collections of microorganisms; a key component of which is to develop a dynamic Information System. For the first time, both culture collection curators as well as their users have been consulted and their feedback, concerning the needs and requirements for collection databases and data accessibility, utilised. Users primarily noted that databases were not interoperable, thus rendering a global search of multiple databases impossible. Unreliable or out-of-date and, in particular, non-homogenous, taxonomic information was also considered to be a major obstacle to searching microbial data efficiently. Moreover, complex searches are rarely possible in online databases thus limiting the extent of search queries. Curators also consider that overall harmonization-including Standard Operating Procedures, data structure, and software tools-is necessary to facilitate their work and to make high-quality data easily accessible to their users. Clearly, the needs of culture collection curators coincide with those of users on the crucial point of database interoperability. In this regard, and in order to design an appropriate Information System, important aspects on which the culture collection community should focus include: the interoperability of data sets with the ontologies to be used; setting best practice in data management, and the definition of an appropriate data standard.

The Design of a High Performance Earth Imagery and Raster Data Management and Processing Platform

NASA Astrophysics Data System (ADS)

Xie, Qingyun

2016-06-01

This paper summarizes the general requirements and specific characteristics of both geospatial raster database management system and raster data processing platform from a domain-specific perspective as well as from a computing point of view. It also discusses the need of tight integration between the database system and the processing system. These requirements resulted in Oracle Spatial GeoRaster, a global scale and high performance earth imagery and raster data management and processing platform. The rationale, design, implementation, and benefits of Oracle Spatial GeoRaster are described. Basically, as a database management system, GeoRaster defines an integrated raster data model, supports image compression, data manipulation, general and spatial indices, content and context based queries and updates, versioning, concurrency, security, replication, standby, backup and recovery, multitenancy, and ETL. It provides high scalability using computer and storage clustering. As a raster data processing platform, GeoRaster provides basic operations, image processing, raster analytics, and data distribution featuring high performance computing (HPC). Specifically, HPC features include locality computing, concurrent processing, parallel processing, and in-memory computing. In addition, the APIs and the plug-in architecture are discussed.

The HyMeX database

NASA Astrophysics Data System (ADS)

Brissebrat, Guillaume; Mastrorillo, Laurence; Ramage, Karim; Boichard, Jean-Luc; Cloché, Sophie; Fleury, Laurence; Klenov, Ludmila; Labatut, Laurent; Mière, Arnaud

2013-04-01

The international HyMeX (HYdrological cycle in the Mediterranean EXperiment) project aims at a better understanding and quantification of the hydrological cycle and related processes in the Mediterranean, with emphasis on high-impact weather events, inter-annual to decadal variability of the Mediterranean coupled system, and associated trends in the context of global change. The project includes long term monitoring of environmental parameters, intensive field campaigns, use of satellite data, modelling studies, as well as post event field surveys and value-added products processing. Therefore HyMeX database incorporates various dataset types from different disciplines, either operational or research. The database relies on a strong collaboration between OMP and IPSL data centres. Field data, which are 1D time series, maps or pictures, are managed by OMP team while gridded data (satellite products, model outputs, radar data...) are managed by IPSL team. At present, the HyMeX database contains about 150 datasets, including 80 hydrological, meteorological, ocean and soil in situ datasets, 30 radar datasets, 15 satellite products, 15 atmosphere, ocean and land surface model outputs from operational (re-)analysis or forecasts and from research simulations, and 5 post event survey datasets. The data catalogue complies with international standards (ISO 19115; INSPIRE; Directory Interchange Format; Global Change Master Directory Thesaurus). It includes all the datasets stored in the HyMeX database, as well as external datasets relevant for the project. All the data, whatever the type is, are accessible through a single gateway. The database website http://mistrals.sedoo.fr/HyMeX offers different tools: - A registration procedure which enables any scientist to accept the data policy and apply for a user database account. - A search tool to browse the catalogue using thematic, geographic and/or temporal criteria. - Sorted lists of the datasets by thematic keywords, by measured parameters, by instruments or by platform type. - Forms to document observations or products that will be provided to the database. - A shopping-cart web interface to order in situ data files. - Ftp facilities to access gridded data. The website will soon propose new facilities. Many in situ datasets have been homogenized and inserted in a relational database yet, in order to enable more accurate data selection and download of different datasets in a shared format. Interoperability between the two data centres will be enhanced by the OpenDAP communication protocol associated with the Thredds catalogue software, which may also be implemented in other data centres that manage data of interest for the HyMeX project. In order to meet the operational needs for the HyMeX 2012 campaigns, a day-to-day quick look and report display website has been developed too: http://sop.hymex.org. It offers a convenient way to browse meteorological conditions and data during the campaign periods.

Evidence-based librarianship: searching for the needed EBL evidence.

PubMed

Eldredge, J D

2000-01-01

This paper discusses the challenges of finding evidence needed to implement Evidence-Based Librarianship (EBL). Focusing first on database coverage for three health sciences librarianship journals, the article examines the information contents of different databases. Strategies are needed to search for relevant evidence in the library literature via these databases, and the problems associated with searching the grey literature of librarianship. Database coverage, plausible search strategies, and the grey literature of library science all pose challenges to finding the needed research evidence for practicing EBL. Health sciences librarians need to ensure that systems are designed that can track and provide access to needed research evidence to support Evidence-Based Librarianship (EBL).

Military, Charter, Unreported Domestic Traffic and General Aviation 1976, 1984, 1992, and 2015 Emission Scenarios

NASA Technical Reports Server (NTRS)

Mortlock, Alan; VanAlstyne, Richard

1998-01-01

The report describes development of databases estimating aircraft engine exhaust emissions for the years 1976 and 1984 from global operations of Military, Charter, historic Soviet and Chinese, Unreported Domestic traffic, and General Aviation (GA). These databases were developed under the National Aeronautics and Space Administration's (NASA) Advanced Subsonic Assessment (AST). McDonnell Douglas Corporation's (MDC), now part of the Boeing Company has previously estimated engine exhaust emissions' databases for the baseline year of 1992 and a 2015 forecast year scenario. Since their original creation, (Ward, 1994 and Metwally, 1995) revised technology algorithms have been developed. Additionally, GA databases have been created and all past NIDC emission inventories have been updated to reflect the new technology algorithms. Revised data (Baughcum, 1996 and Baughcum, 1997) for the scheduled inventories have been used in this report to provide a comparison of the total aviation emission forecasts from various components. Global results of two historic years (1976 and 1984), a baseline year (1992) and a forecast year (2015) are presented. Since engine emissions are directly related to fuel usage, an overview of individual aviation annual global fuel use for each inventory component is also given in this report.

Global Soil Respiration: Interaction with Environmental Variables and Response to Climate Change

NASA Astrophysics Data System (ADS)

Jian, J.; Steele, M.

2016-12-01

Background, methods, objectivesTerrestrial ecosystems take up around 1.7 Pg C per year; however, the role of terrestrial ecosystems as a carbon sink may change to carbon source by 2050, as a result of positive feedback of soil respiration response to global warming. Nevertheless, limited evidence shows that soil carbon is decreasing and the role of terrestrial ecosystems is changing under warming. One possibility is the positive feedback may slow due to the acclimation of soil respiration as a result of decreasing temperature sensitivity (Q10) with warming. To verify and quantify the uncertainty in soil carbon cycling and feedbacks to climate change, we assembled soil respiration observations from 1961 to 2014 from 724 publications into a monthly global soil respiration database (MSRDB), which included 13482 soil respiration measurements together with 38 other ancillary measurements from 538 sites. Using this database we examined macroscale variation in the relationship between soil respiration and air temperature, precipitation, leaf area index and soil properties. We also quantified global soil respiration, the sources of uncertainty, and its feedback to warming based on climate region-oriented models with variant Q10function. Results and ConclusionsOur results showed substantial heterogeneity in the relationship between soil respiration and environmental factors across different climate regions. For example, soil respiration was strongly related to vegetation (via leaf area index) in colder regions, but not in tropical region. Only in tropical and arid regions did soil properties explain any variation in soil respiration. Global annual mean soil respiration from 1961 to 2014 was estimated to be 72.41 Pg C yr-1 based on monthly global soil respiration database, 25 Pg lower than estimated based on yearly soil respiration database. By using the variable Q10 models, we estimated that global soil respiration increased at a rate of 0.03 Pg C yr-1 from 1961 to 2014, smaller than previous studies ( 0.1 Pg C yr-1). The substantial variations in these relationships suggest that regional scales is important for understanding and prediction of global carbon cycling and how it response to climate change.

Checkpointing and Recovery in Distributed and Database Systems

ERIC Educational Resources Information Center

Wu, Jiang

2011-01-01

A transaction-consistent global checkpoint of a database records a state of the database which reflects the effect of only completed transactions and not the results of any partially executed transactions. This thesis establishes the necessary and sufficient conditions for a checkpoint of a data item (or the checkpoints of a set of data items) to…

A global, open-source database of flood protection standards

NASA Astrophysics Data System (ADS)

Scussolini, Paolo; Aerts, Jeroen; Jongman, Brenden; Bouwer, Laurens; Winsemius, Hessel; de Moel, Hans; Ward, Philip

2016-04-01

Accurate flood risk estimation is pivotal in that it enables risk-informed policies in disaster risk reduction, as emphasized in the recent Sendai framework for Disaster Risk Reduction. To improve our understanding of flood risk, models are now capable to provide actionable risk information on the (sub)global scale. Still the accuracy of their results is greatly limited by the lack of information on standards of protection to flood that are actually in place; and researchers thus take large assumptions on the extent of protection. With our work we propose a first global, open-source database of FLOod PROtection Standards, FLOPROS, covering a range of spatial scales. FLOPROS is structured in three layers of information, and merges them into one consistent database: 1) the Design layer contains empirical information about the standard of protection presently in place; 2) the Policy layer contains intended protection standards from normative documents; 3) the Model layer uses a validated numerical approach to calculate protection standards for areas not covered in the other layers. The FLOPROS database can be used for more accurate risk assessment exercises across scales. As the database should be continually updated to reflect new interventions, we invite researchers and practitioners to contribute information. Further, we look for partners within the risk community to participate in additional strategies to implement the amount and accuracy of information contained in this first version of FLOPROS.

Towards a Global Service Registry for the World-Wide LHC Computing Grid

NASA Astrophysics Data System (ADS)

Field, Laurence; Alandes Pradillo, Maria; Di Girolamo, Alessandro

2014-06-01

The World-Wide LHC Computing Grid encompasses a set of heterogeneous information systems; from central portals such as the Open Science Grid's Information Management System and the Grid Operations Centre Database, to the WLCG information system, where the information sources are the Grid services themselves. Providing a consistent view of the information, which involves synchronising all these informations systems, is a challenging activity that has lead the LHC virtual organisations to create their own configuration databases. This experience, whereby each virtual organisation's configuration database interfaces with multiple information systems, has resulted in the duplication of effort, especially relating to the use of manual checks for the handling of inconsistencies. The Global Service Registry aims to address this issue by providing a centralised service that aggregates information from multiple information systems. It shows both information on registered resources (i.e. what should be there) and available resources (i.e. what is there). The main purpose is to simplify the synchronisation of the virtual organisation's own configuration databases, which are used for job submission and data management, through the provision of a single interface for obtaining all the information. By centralising the information, automated consistency and validation checks can be performed to improve the overall quality of information provided. Although internally the GLUE 2.0 information model is used for the purpose of integration, the Global Service Registry in not dependent on any particular information model for ingestion or dissemination. The intention is to allow the virtual organisation's configuration databases to be decoupled from the underlying information systems in a transparent way and hence simplify any possible future migration due to the evolution of those systems. This paper presents the Global Service Registry architecture, its advantages compared to the current situation and how it can support the evolution of information systems.

Suitability of measurements used to assess mental health outcomes in men and women trafficked for sexual and labour exploitation: a systematic review.

PubMed

Doherty, S; Oram, S; Siriwardhana, C; Abas, M

2016-05-01

Trafficking is a global human rights violation with multiple and complex mental health consequences. Valid and reliable mental health assessment tools are needed to inform health-care provision. We reviewed mental health assessment tools used in research with men and women trafficked for sexual and labour exploitation. We searched nine electronic databases (PsycINFO, Ovid Medline, PubMed, Embase, Assia, the Web of Science, Global Health, Google Scholar, and Open Grey) and hand-searched the reference lists of relevant identified studies. Seven studies were included in this Review. Six of the studies screened for post-traumatic stress disorder, depression, and anxiety; one study screened for harmful use or abuse of alcohol and used a diagnostic tool to assess post-traumatic stress disorder, depression, and anxiety. Two studies included men in their sample population. Although the reported prevalence of mental health problems was high, little information was provided about the validity, reliability, and cultural appropriateness of assessment tools. Further research is needed to determine which assessment tools are culturally appropriate, valid, and reliable for trafficked people. Copyright © 2016 Elsevier Ltd. All rights reserved.

Development of a national anthropogenic heating database with an extrapolation for international cities

NASA Astrophysics Data System (ADS)

Sailor, David J.; Georgescu, Matei; Milne, Jeffrey M.; Hart, Melissa A.

2015-10-01

Given increasing utility of numerical models to examine urban impacts on meteorology and climate, there exists an urgent need for accurate representation of seasonally and diurnally varying anthropogenic heating data, an important component of the urban energy budget for cities across the world. Incorporation of anthropogenic heating data as inputs to existing climate modeling systems has direct societal implications ranging from improved prediction of energy demand to health assessment, but such data are lacking for most cities. To address this deficiency we have applied a standardized procedure to develop a national database of seasonally and diurnally varying anthropogenic heating profiles for 61 of the largest cities in the United Stated (U.S.). Recognizing the importance of spatial scale, the anthropogenic heating database developed includes the city scale and the accompanying greater metropolitan area. Our analysis reveals that a single profile function can adequately represent anthropogenic heating during summer but two profile functions are required in winter, one for warm climate cities and another for cold climate cities. On average, although anthropogenic heating is 40% larger in winter than summer, the electricity sector contribution peaks during summer and is smallest in winter. Because such data are similarly required for international cities where urban climate assessments are also ongoing, we have made a simple adjustment accounting for different international energy consumption rates relative to the U.S. to generate seasonally and diurnally varying anthropogenic heating profiles for a range of global cities. The methodological approach presented here is flexible and straightforwardly applicable to cities not modeled because of presently unavailable data. Because of the anticipated increase in global urban populations for many decades to come, characterizing this fundamental aspect of the urban environment - anthropogenic heating - is an essential element toward continued progress in urban climate assessment.

Data-mining analysis of the global distribution of soil carbon in observational databases and Earth system models

NASA Astrophysics Data System (ADS)

Hashimoto, Shoji; Nanko, Kazuki; Ťupek, Boris; Lehtonen, Aleksi

2017-03-01

Future climate change will dramatically change the carbon balance in the soil, and this change will affect the terrestrial carbon stock and the climate itself. Earth system models (ESMs) are used to understand the current climate and to project future climate conditions, but the soil organic carbon (SOC) stock simulated by ESMs and those of observational databases are not well correlated when the two are compared at fine grid scales. However, the specific key processes and factors, as well as the relationships among these factors that govern the SOC stock, remain unclear; the inclusion of such missing information would improve the agreement between modeled and observational data. In this study, we sought to identify the influential factors that govern global SOC distribution in observational databases, as well as those simulated by ESMs. We used a data-mining (machine-learning) (boosted regression trees - BRT) scheme to identify the factors affecting the SOC stock. We applied BRT scheme to three observational databases and 15 ESM outputs from the fifth phase of the Coupled Model Intercomparison Project (CMIP5) and examined the effects of 13 variables/factors categorized into five groups (climate, soil property, topography, vegetation, and land-use history). Globally, the contributions of mean annual temperature, clay content, carbon-to-nitrogen (CN) ratio, wetland ratio, and land cover were high in observational databases, whereas the contributions of the mean annual temperature, land cover, and net primary productivity (NPP) were predominant in the SOC distribution in ESMs. A comparison of the influential factors at a global scale revealed that the most distinct differences between the SOCs from the observational databases and ESMs were the low clay content and CN ratio contributions, and the high NPP contribution in the ESMs. The results of this study will aid in identifying the causes of the current mismatches between observational SOC databases and ESM outputs and improve the modeling of terrestrial carbon dynamics in ESMs. This study also reveals how a data-mining algorithm can be used to assess model outputs.

Automated forensic DNA purification optimized for FTA card punches and identifiler STR-based PCR analysis.

PubMed

Tack, Lois C; Thomas, Michelle; Reich, Karl

2007-03-01

Forensic labs globally face the same problem-a growing need to process a greater number and wider variety of samples for DNA analysis. The same forensic lab can be tasked all at once with processing mixed casework samples from crime scenes, convicted offender samples for database entry, and tissue from tsunami victims for identification. Besides flexibility in the robotic system chosen for forensic automation, there is a need, for each sample type, to develop new methodology that is not only faster but also more reliable than past procedures. FTA is a chemical treatment of paper, unique to Whatman Bioscience, and is used for the stabilization and storage of biological samples. Here, the authors describe optimization of the Whatman FTA Purification Kit protocol for use with the AmpFlSTR Identifiler PCR Amplification Kit.

WHE-PAGER Project: A new initiative in estimating global building inventory and its seismic vulnerability

USGS Publications Warehouse

Porter, K.A.; Jaiswal, K.S.; Wald, D.J.; Greene, M.; Comartin, Craig

2008-01-01

The U.S. Geological Survey’s Prompt Assessment of Global Earthquake’s Response (PAGER) Project and the Earthquake Engineering Research Institute’s World Housing Encyclopedia (WHE) are creating a global database of building stocks and their earthquake vulnerability. The WHE already represents a growing, community-developed public database of global housing and its detailed structural characteristics. It currently contains more than 135 reports on particular housing types in 40 countries. The WHE-PAGER effort extends the WHE in several ways: (1) by addressing non-residential construction; (2) by quantifying the prevalence of each building type in both rural and urban areas; (3) by addressing day and night occupancy patterns, (4) by adding quantitative vulnerability estimates from judgment or statistical observation; and (5) by analytically deriving alternative vulnerability estimates using in part laboratory testing.

Improved oilfield GHG accounting using a global oilfield database

NASA Astrophysics Data System (ADS)

Roberts, S.; Brandt, A. R.; Masnadi, M.

2016-12-01

The definition of oil is shifting in considerable ways. Conventional oil resources are declining as oil sands, heavy oils, and others emerge. Technological advances mean that these unconventional hydrocarbons are now viable resources. Meanwhile, scientific evidence is mounting that climate change is occurring. The oil sector is responsible for 35% of global greenhouse gas (GHG) emissions, but the climate impacts of these new unconventional oils are not well understood. As such, the Oil Climate Index (OCI) project has been an international effort to evaluate the total life-cycle environmental GHG emissions of different oil fields globally. Over the course of the first and second phases of the project, 30 and 75 global oil fields have been investigated, respectively. The 75 fields account for about 25% of global oil production. For the third phase of the project, it is aimed to expand the OCI to contain closing to 100% of global oil production; leading to the analysis of 8000 fields. To accomplish this, a robust database system is required to handle and manipulate the data. Therefore, the integration of the data into the computer science language SQL (Structured Query Language) was performed. The implementation of SQL allows users to process the data more efficiently than would be possible by using the previously established program (Microsoft Excel). Next, a graphic user interface (gui) was implemented, in the computer science language of C#, in order to make the data interactive; enabling people to update the database without prior knowledge of SQL being necessary.

The development of a new database of gas emissions: MAGA, a collaborative web environment for collecting data

NASA Astrophysics Data System (ADS)

Cardellini, C.; Chiodini, G.; Frigeri, A.; Bagnato, E.; Aiuppa, A.; McCormick, B.

2013-12-01

The data on volcanic and non-volcanic gas emissions available online are, as today, incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various spatial and temporal scales. Building on the Googas experience we are now extending its capability, particularly on the user side, by developing a new web environment for collecting and publishing data. We have started to create a new and detailed web database (MAGA: MApping GAs emissions) for the deep carbon degassing in the Mediterranean area. This project is part of the Deep Earth Carbon Degassing (DECADE) research initiative, lunched in 2012 by the Deep Carbon Observatory (DCO) to improve the global budget of endogenous carbon from volcanoes. MAGA database is planned to complement and integrate the work in progress within DECADE in developing CARD (Carbon Degassing) database. MAGA database will allow researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and a complete literature survey on publications on volcanic gas fluxes, by including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores. For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of the site. Data can be accessed on the network from a web interface or as a data-driven web service, where software clients can request data directly from the database. This way Geographical Information Systems (GIS) and Virtual Globes (e.g., Google Earth) can easily access the database, and data can be exchanged with other database. In details the database now includes: i) more than 1000 flux data about volcanic plume degassing from Etna (4 summit craters and bulk degassing) and Stromboli volcanoes, with time averaged CO2 fluxes of ~ 18000 and 766 t/d, respectively; ii) data from ~ 30 sites of diffuse soil degassing from Napoletan volcanoes, Azores, Canary, Etna, Stromboli, and Vulcano Island, with a wide range of CO2 fluxes (from les than 1 to 1500 t/d) and iii) several data on fumarolic emissions (~ 7 sites) with CO2 fluxes up to 1340 t/day (i.e., Stromboli). When available, time series of compositional data have been archived in the database (e.g., for Campi Flegrei fumaroles). We believe MAGA data-base is an important starting point to develop a large scale, expandable data-base aimed to excite, inspire, and encourage participation among researchers. In addition, the possibility to archive location and qualitative information for gas emission/sites not yet investigated, could stimulate the scientific community for future researches and will provide an indication on the current uncertainty on deep carbon fluxes global estimates.

Starbase Data Tables: An ASCII Relational Database for Unix

NASA Astrophysics Data System (ADS)

Roll, John

2011-11-01

Database management is an increasingly important part of astronomical data analysis. Astronomers need easy and convenient ways of storing, editing, filtering, and retrieving data about data. Commercial databases do not provide good solutions for many of the everyday and informal types of database access astronomers need. The Starbase database system with simple data file formatting rules and command line data operators has been created to answer this need. The system includes a complete set of relational and set operators, fast search/index and sorting operators, and many formatting and I/O operators. Special features are included to enhance the usefulness of the database when manipulating astronomical data. The software runs under UNIX, MSDOS and IRAF.

Sensitivity of Latent Heating Profiles to Environmental Conditions: Implications for TRMM and Climate Research

NASA Technical Reports Server (NTRS)

Shepherd, J. Marshall; Einaudi, Franco (Technical Monitor)

2000-01-01

The Tropical Rainfall Measuring Mission (TRMM) as a part of NASA's Earth System Enterprise is the first mission dedicated to measuring tropical rainfall through microwave and visible sensors, and includes the first spaceborne rain radar. Tropical rainfall comprises two-thirds of global rainfall. It is also the primary distributor of heat through the atmosphere's circulation. It is this circulation that defines Earth's weather and climate. Understanding rainfall and its variability is crucial to understanding and predicting global climate change. Weather and climate models need an accurate assessment of the latent heating released as tropical rainfall occurs. Currently, cloud model-based algorithms are used to derive latent heating based on rainfall structure. Ultimately, these algorithms can be applied to actual data from TRMM. This study investigates key underlying assumptions used in developing the latent heating algorithms. For example, the standard algorithm is highly dependent on a system's rainfall amount and structure. It also depends on an a priori database of model-derived latent heating profiles based on the aforementioned rainfall characteristics. Unanswered questions remain concerning the sensitivity of latent heating profiles to environmental conditions (both thermodynamic and kinematic), regionality, and seasonality. This study investigates and quantifies such sensitivities and seeks to determine the optimal latent heating profile database based on the results. Ultimately, the study seeks to produce an optimized latent heating algorithm based not only on rainfall structure but also hydrometeor profiles.

NASA's Global Change Master Directory: Discover and Access Earth Science Data Sets, Related Data Services, and Climate Diagnostics

NASA Technical Reports Server (NTRS)

Aleman, Alicia; Olsen, Lola; Ritz, Scott; Morahan, Michael; Cepero, Laurel; Stevens, Tyler

2011-01-01

NASA's Global Change Master Directory provides the scientific community with the ability to discover, access, and use Earth science data, data-related services, and climate diagnostics worldwide. The GCMD offers descriptions of Earth science data sets using the Directory Interchange Format (DIF) metadata standard; Earth science related data services are described using the Service Entry Resource Format (SERF); and climate visualizations are described using the Climate Diagnostic (CD) standard. The DIF, SERF and CD standards each capture data attributes used to determine whether a data set, service, or climate visualization is relevant to a user's needs. Metadata fields include: title, summary, science keywords, service keywords, data center, data set citation, personnel, instrument, platform, quality, related URL, temporal and spatial coverage, data resolution and distribution information. In addition, nine valuable sets of controlled vocabularies have been developed to assist users in normalizing the search for data descriptions. An update to the GCMD's search functionality is planned to further capitalize on the controlled vocabularies during database queries. By implementing a dynamic keyword "tree", users will have the ability to search for data sets by combining keywords in new ways. This will allow users to conduct more relevant and efficient database searches to support the free exchange and re-use of Earth science data. http://gcmd.nasa.gov/

Data Resource Profile: United Nations Children’s Fund (UNICEF)

PubMed Central

Murray, Colleen; Newby, Holly

2012-01-01

The United Nations Children’s Fund (UNICEF) plays a leading role in the collection, compilation, analysis and dissemination of data to inform sound policies, legislation and programmes for promoting children’s rights and well-being, and for global monitoring of progress towards the Millennium Development Goals. UNICEF maintains a set of global databases representing nearly 200 countries and covering the areas of child mortality, child health, maternal health, nutrition, immunization, water and sanitation, HIV/AIDS, education and child protection. These databases consist of internationally comparable and statistically sound data, and are updated annually through a process that draws on a wealth of data provided by UNICEF’s wide network of >150 field offices. The databases are composed primarily of estimates from household surveys, with data from censuses, administrative records, vital registration systems and statistical models contributing to some key indicators as well. The data are assessed for quality based on a set of objective criteria to ensure that only the most reliable nationally representative information is included. For most indicators, data are available at the global, regional and national levels, plus sub-national disaggregation by sex, urban/rural residence and household wealth. The global databases are featured in UNICEF’s flagship publications, inter-agency reports, including the Secretary General’s Millennium Development Goals Report and Countdown to 2015, sector-specific reports and statistical country profiles. They are also publicly available on www.childinfo.org, together with trend data and equity analyses. PMID:23211414

Managing troubled data: Coastal data partnerships smooth data integration

USGS Publications Warehouse

Hale, S.S.; Hale, Miglarese A.; Bradley, M.P.; Belton, T.J.; Cooper, L.D.; Frame, M.T.; Friel, C.A.; Harwell, L.M.; King, R.E.; Michener, W.K.; Nicolson, D.T.; Peterjohn, B.G.

2003-01-01

Understanding the ecology, condition, and changes of coastal areas requires data from many sources. Broad-scale and long-term ecological questions, such as global climate change, biodiversity, and cumulative impacts of human activities, must be addressed with databases that integrate data from several different research and monitoring programs. Various barriers, including widely differing data formats, codes, directories, systems, and metadata used by individual programs, make such integration troublesome. Coastal data partnerships, by helping overcome technical, social, and organizational barriers, can lead to a better understanding of environmental issues, and may enable better management decisions. Characteristics of successful data partnerships include a common need for shared data, strong collaborative leadership, committed partners willing to invest in the partnership, and clear agreements on data standards and data policy. Emerging data and metadata standards that become widely accepted are crucial. New information technology is making it easier to exchange and integrate data. Data partnerships allow us to create broader databases than would be possible for any one organization to create by itself.

Anthropometry for WorldSID, a World-Harmonized Midsize Male Side Impact Crash Dummy

DOE Office of Scientific and Technical Information (OSTI.GOV)

S. Moss; Z. Wang; M. Salloum

2000-06-19

The WorldSID project is a global effort to design a new generation side impact crash test dummy under the direction of the International Organization for Standardization (ISO). The first WorldSID crash dummy will represent a world-harmonized mid-size adult male. This paper discusses the research and rationale undertaken to define the anthropometry of a world standard midsize male in the typical automotive seated posture. Various anthropometry databases are compared region by region and in terms of the key dimensions needed for crash dummy design. The Anthropometry for Motor Vehicle Occupants (AMVO) dataset, as established by the University of Michigan Transportation Researchmore » Institute (UMTRI), is selected as the basis for the WorldSID mid-size male, updated to include revisions to the pelvis bone location. The proposed mass of the dummy is 77.3kg with full arms. The rationale for the selected mass is discussed. The joint location and surface landmark database is appended to this paper.« less

Managing troubled data: coastal data partnerships smooth data integration.

PubMed

Hale, Stephen S; Miglarese, Anne Hale; Bradley, M Patricia; Belton, Thomas J; Cooper, Larry D; Frame, Michael T; Friel, Christopher A; Harwell, Linda M; King, Robert E; Michener, William K; Nicolson, David T; Peterjohn, Bruce G

2003-01-01

Understanding the ecology, condition, and changes of coastal areas requires data from many sources. Broad-scale and long-term ecological questions, such as global climate change, biodiversity, and cumulative impacts of human activities, must be addressed with databases that integrate data from several different research and monitoring programs. Various barriers, including widely differing data formats, codes, directories, systems, and metadata used by individual programs, make such integration troublesome. Coastal data partnerships, by helping overcome technical, social, and organizational barriers, can lead to a better understanding of environmental issues, and may enable better management decisions. Characteristics of successful data partnerships include a common need for shared data, strong collaborative leadership, committed partners willing to invest in the partnership, and clear agreements on data standards and data policy. Emerging data and metadata standards that become widely accepted are crucial. New information technology is making it easier to exchange and integrate data. Data partnerships allow us to create broader databases than would be possible for any one organization to create by itself.

Users Guide to the JPL Doppler Gravity Database

NASA Technical Reports Server (NTRS)

Muller, P. M.; Sjogren, W. L.

1986-01-01

Local gravity accelerations and gravimetry have been determined directly from spacecraft Doppler tracking data near the Moon and various planets by the Jet Propulsion Laboratory. Researchers in many fields have an interest in planet-wide global gravimetric mapping and its applications. Many of them use their own computers in support of their studies and would benefit from being able to directly manipulate these gravity data for inclusion in their own modeling computations. Pubication of some 150 Apollo 15 subsatellite low-altitude, high-resolution, single-orbit data sets is covered. The doppler residuals with a determination of the derivative function providing line-of-sight-gravity are both listed and plotted (on microfilm), and can be ordered in computer readable forms (tape and floppy disk). The form and format of this database as well as the methods of data reduction are explained and referenced. A skeleton computer program is provided which can be modified to support re-reductions and re-formatted presentations suitable to a wide variety of research needs undertaken on mainframe or PC class microcomputers.

Improving Database Simulations for Bayesian Precipitation Retrieval using Non-Spherical Ice Particles

NASA Astrophysics Data System (ADS)

Ringerud, S.; Skofronick Jackson, G.; Kulie, M.; Randel, D.

2016-12-01

NASA's Global Precipitation Measurement Mission (GPM) provides a wealth of both active and passive microwave observations aimed at furthering understanding of global precipitation and the hydrologic cycle. Employing a constellation of passive microwave radiometers increases global coverage and sampling, while the core satellite acts as a transfer standard, enabling consistent retrievals across individual constellation members. The transfer standard is applied in the form of a physically based a priori database constructed for use in Bayesian retrieval algorithms for each radiometer. The database is constructed using hydrometeor profiles optimized for the best fit to simultaneous active/passive core satellite measurements via the GPM Combined Algorithm. Initial validation of GPM rainfall products using the combined database suggests high retrieval errors for convective precipitation over land and at high latitudes. In such regimes, the signal from ice scattering observed at the higher microwave frequencies becomes particularly important for detecting and retrieving precipitation. For cross-track sounders such as MHS and SAPHIR, this signal is crucial. It is therefore important that the scattering signals associated with precipitation are accurately represented and modeled in the retrieval database. In the current GPM combined retrieval and constellation databases, ice hydrometeors are represented as "fluffy spheres", with assumed density and scattering parameters calculated using Mie theory. Resulting simulated Tb agree reasonably well at frequencies up to 89 GHz, but show significant biases at higher frequencies. In this work the database is recreated using an ensemble of non-spherical ice particles with single scattering properties calculated using discrete dipole approximation. Simulated Tb agreement is significantly improved across the high frequencies, decreasing biases by an order of magnitude in several of the channels. The new database is applied for a sample of GPM constellation retrievals and the retrieved precipitation rates compared, to demonstrate areas where the use of more complex ice particles will have the greatest effect upon the final retrievals.

University Faculty Use of Computerized Databases: An Assessment of Needs and Resources.

ERIC Educational Resources Information Center

Borgman, Christine L.; And Others

1985-01-01

Results of survey indicate that: academic faculty are unaware of range of databases available; few recognize need for databases in research; most delegate searching to librarian or assistant, rather than perform searching themselves; and 39 database guides identified tended to be descriptive rather than evaluative. A comparison of the guides is…

Database Systems and Oracle: Experiences and Lessons Learned

ERIC Educational Resources Information Center

Dunn, Deborah

2005-01-01

In a tight job market, IT professionals with database experience are likely to be in great demand. Companies need database personnel who can help improve access to and security of data. The events of September 11 have increased business' awareness of the need for database security, backup, and recovery procedures. It is our responsibility to…

Mars Global Digital Dune Database: MC2-MC29

USGS Publications Warehouse

Hayward, Rosalyn K.; Mullins, Kevin F.; Fenton, L.K.; Hare, T.M.; Titus, T.N.; Bourke, M.C.; Colaprete, Anthony; Christensen, P.R.

2007-01-01

Introduction The Mars Global Digital Dune Database presents data and describes the methodology used in creating the database. The database provides a comprehensive and quantitative view of the geographic distribution of moderate- to large-size dune fields from 65? N to 65? S latitude and encompasses ~ 550 dune fields. The database will be expanded to cover the entire planet in later versions. Although we have attempted to include all dune fields between 65? N and 65? S, some have likely been excluded for two reasons: 1) incomplete THEMIS IR (daytime) coverage may have caused us to exclude some moderate- to large-size dune fields or 2) resolution of THEMIS IR coverage (100m/pixel) certainly caused us to exclude smaller dune fields. The smallest dune fields in the database are ~ 1 km2 in area. While the moderate to large dune fields are likely to constitute the largest compilation of sediment on the planet, smaller stores of sediment of dunes are likely to be found elsewhere via higher resolution data. Thus, it should be noted that our database excludes all small dune fields and some moderate to large dune fields as well. Therefore the absence of mapped dune fields does not mean that such dune fields do not exist and is not intended to imply a lack of saltating sand in other areas. Where availability and quality of THEMIS visible (VIS) or Mars Orbiter Camera narrow angle (MOC NA) images allowed, we classifed dunes and included dune slipface measurements, which were derived from gross dune morphology and represent the prevailing wind direction at the last time of significant dune modification. For dunes located within craters, the azimuth from crater centroid to dune field centroid was calculated. Output from a general circulation model (GCM) is also included. In addition to polygons locating dune fields, the database includes over 1800 selected Thermal Emission Imaging System (THEMIS) infrared (IR), THEMIS visible (VIS) and Mars Orbiter Camera Narrow Angle (MOC NA) images that were used to build the database. The database is presented in a variety of formats. It is presented as a series of ArcReader projects which can be opened using the free ArcReader software. The latest version of ArcReader can be downloaded at http://www.esri.com/software/arcgis/arcreader/download.html. The database is also presented in ArcMap projects. The ArcMap projects allow fuller use of the data, but require ESRI ArcMap? software. Multiple projects were required to accommodate the large number of images needed. A fuller description of the projects can be found in the Dunes_ReadMe file and the ReadMe_GIS file in the Documentation folder. For users who prefer to create their own projects, the data is available in ESRI shapefile and geodatabase formats, as well as the open Geographic Markup Language (GML) format. A printable map of the dunes and craters in the database is available as a Portable Document Format (PDF) document. The map is also included as a JPEG file. ReadMe files are available in PDF and ASCII (.txt) files. Tables are available in both Excel (.xls) and ASCII formats.

A Quality-Control-Oriented Database for a Mesoscale Meteorological Observation Network

NASA Astrophysics Data System (ADS)

Lussana, C.; Ranci, M.; Uboldi, F.

2012-04-01

In the operational context of a local weather service, data accessibility and quality related issues must be managed by taking into account a wide set of user needs. This work describes the structure and the operational choices made for the operational implementation of a database system storing data from highly automated observing stations, metadata and information on data quality. Lombardy's environmental protection agency, ARPA Lombardia, manages a highly automated mesoscale meteorological network. A Quality Assurance System (QAS) ensures that reliable observational information is collected and disseminated to the users. The weather unit in ARPA Lombardia, at the same time an important QAS component and an intensive data user, has developed a database specifically aimed to: 1) providing quick access to data for operational activities and 2) ensuring data quality for real-time applications, by means of an Automatic Data Quality Control (ADQC) procedure. Quantities stored in the archive include hourly aggregated observations of: precipitation amount, temperature, wind, relative humidity, pressure, global and net solar radiation. The ADQC performs several independent tests on raw data and compares their results in a decision-making procedure. An important ADQC component is the Spatial Consistency Test based on Optimal Interpolation. Interpolated and Cross-Validation analysis values are also stored in the database, providing further information to human operators and useful estimates in case of missing data. The technical solution adopted is based on a LAMP (Linux, Apache, MySQL and Php) system, constituting an open source environment suitable for both development and operational practice. The ADQC procedure itself is performed by R scripts directly interacting with the MySQL database. Users and network managers can access the database by using a set of web-based Php applications.

SIDD: A Semantically Integrated Database towards a Global View of Human Disease

PubMed Central

Cheng, Liang; Wang, Guohua; Li, Jie; Zhang, Tianjiao; Xu, Peigang; Wang, Yadong

2013-01-01

Background A number of databases have been developed to collect disease-related molecular, phenotypic and environmental features (DR-MPEs), such as genes, non-coding RNAs, genetic variations, drugs, phenotypes and environmental factors. However, each of current databases focused on only one or two DR-MPEs. There is an urgent demand to develop an integrated database, which can establish semantic associations among disease-related databases and link them to provide a global view of human disease at the biological level. This database, once developed, will facilitate researchers to query various DR-MPEs through disease, and investigate disease mechanisms from different types of data. Methodology To establish an integrated disease-associated database, disease vocabularies used in different databases are mapped to Disease Ontology (DO) through semantic match. 4,284 and 4,186 disease terms from Medical Subject Headings (MeSH) and Online Mendelian Inheritance in Man (OMIM) respectively are mapped to DO. Then, the relationships between DR-MPEs and diseases are extracted and merged from different source databases for reducing the data redundancy. Conclusions A semantically integrated disease-associated database (SIDD) is developed, which integrates 18 disease-associated databases, for researchers to browse multiple types of DR-MPEs in a view. A web interface allows easy navigation for querying information through browsing a disease ontology tree or searching a disease term. Furthermore, a network visualization tool using Cytoscape Web plugin has been implemented in SIDD. It enhances the SIDD usage when viewing the relationships between diseases and DR-MPEs. The current version of SIDD (Jul 2013) documents 4,465,131 entries relating to 139,365 DR-MPEs, and to 3,824 human diseases. The database can be freely accessed from: http://mlg.hit.edu.cn/SIDD. PMID:24146757

Global Drainage Patterns to Modern Terrestrial Sedimentary Basins and its Influence on Large River Systems

NASA Astrophysics Data System (ADS)

Nyberg, B.; Helland-Hansen, W.

2017-12-01

Long-term preservation of alluvial sediments is dependent on the hydrological processes that deposit sediments solely within an area that has available accomodation space and net subsidence know as a sedimentary basin. An understanding of the river processes contributing to terrestrial sedimentary basins is essential to fundamentally constrain and quantify controls on the modern terrestrial sink. Furthermore, the terrestrial source to sink controls place constraints on the entire coastal, shelf and deep marine sediment routing systems. In addition, the geographical importance of modern terrestrial sedimentary basins for agriculture and human settlements has resulted in significant upstream anthropogenic catchment modification for irrigation and energy needs. Yet to our knowledge, a global catchment model depicting the drainage patterns to modern terrestrial sedimentary basins has previously not been established that may be used to address these challenging issues. Here we present a new database of 180,737 global catchments that show the surface drainage patterns to modern terrestrial sedimentary basins. This is achieved by using high resolution river networks derived from digital elevation models in relation to newly acquired maps on global modern sedimentary basins to identify terrestrial sinks. The results show that active tectonic regimes are typically characterized by larger terrestrial sedimentary basins, numerous smaller source catchments and a high source to sink relief ratio. To the contrary passive margins drain catchments to smaller terrestrial sedimentary basins, are composed of fewer source catchments that are relatively larger and a lower source to sink relief ratio. The different geomorphological characteristics of source catchments by tectonic setting influence the spatial and temporal patterns of fluvial architecture within sedimentary basins and the anthropogenic methods of exploiting those rivers. The new digital database resource is aimed to help the geoscientific community to contribute further to our quantitative understanding of source-to-sink systems and its allogenic and autogenic controls, geomorphological characteristics, terrestrial sediment transit times and the anthropogenic impact on those systems.

Use of Bayesian event trees in semi-quantitative volcano eruption forecasting and hazard analysis

NASA Astrophysics Data System (ADS)

Wright, Heather; Pallister, John; Newhall, Chris

2015-04-01

Use of Bayesian event trees to forecast eruptive activity during volcano crises is an increasingly common practice for the USGS-USAID Volcano Disaster Assistance Program (VDAP) in collaboration with foreign counterparts. This semi-quantitative approach combines conceptual models of volcanic processes with current monitoring data and patterns of occurrence to reach consensus probabilities. This approach allows a response team to draw upon global datasets, local observations, and expert judgment, where the relative influence of these data depends upon the availability and quality of monitoring data and the degree to which the volcanic history is known. The construction of such event trees additionally relies upon existence and use of relevant global databases and documented past periods of unrest. Because relevant global databases may be underpopulated or nonexistent, uncertainty in probability estimations may be large. Our 'hybrid' approach of combining local and global monitoring data and expert judgment facilitates discussion and constructive debate between disciplines: including seismology, gas geochemistry, geodesy, petrology, physical volcanology and technology/engineering, where difference in opinion between response team members contributes to definition of the uncertainty in the probability estimations. In collaboration with foreign colleagues, we have created event trees for numerous areas experiencing volcanic unrest. Event trees are created for a specified time frame and are updated, revised, or replaced as the crisis proceeds. Creation of an initial tree is often prompted by a change in monitoring data, such that rapid assessment of probability is needed. These trees are intended as a vehicle for discussion and a way to document relevant data and models, where the target audience is the scientists themselves. However, the probabilities derived through the event-tree analysis can also be used to help inform communications with emergency managers and the public. VDAP trees evaluate probabilities of: magmatic intrusion, likelihood of eruption, magnitude of eruption, and types of associated hazardous events and their extents. In a few cases, trees have been extended to also assess and communicate vulnerability and relative risk.

Rapid Global Expansion of Invertebrate Fisheries: Trends, Drivers, and Ecosystem Effects

PubMed Central

Anderson, Sean C.; Mills Flemming, Joanna; Watson, Reg; Lotze, Heike K.

2011-01-01

Background Worldwide, finfish fisheries are receiving increasing assessment and regulation, slowly leading to more sustainable exploitation and rebuilding. In their wake, invertebrate fisheries are rapidly expanding with little scientific scrutiny despite increasing socio-economic importance. Methods and Findings We provide the first global evaluation of the trends, drivers, and population and ecosystem consequences of invertebrate fisheries based on a global catch database in combination with taxa-specific reviews. We also develop new methodologies to quantify temporal and spatial trends in resource status and fishery development. Since 1950, global invertebrate catches have increased 6-fold with 1.5 times more countries fishing and double the taxa reported. By 2004, 34% of invertebrate fisheries were over-exploited, collapsed, or closed. New fisheries have developed increasingly rapidly, with a decrease of 6 years (3 years) in time to peak from the 1950s to 1990s. Moreover, some fisheries have expanded further and further away from their driving market, encompassing a global fishery by the 1990s. 71% of taxa (53% of catches) are harvested with habitat-destructive gear, and many provide important ecosystem functions including habitat, filtration, and grazing. Conclusions Our findings suggest that invertebrate species, which form an important component of the basis of marine food webs, are increasingly exploited with limited stock and ecosystem-impact assessments, and enhanced management attention is needed to avoid negative consequences for ocean ecosystems and human well-being. PMID:21408090

Greenhouse Gas Mitigation Options Database and Tool - Data ...

EPA Pesticide Factsheets

Industry and electricity production facilities generate over 50 percent of greenhouse gas (GHG) emissions in the United States. There is a growing consensus among scientists that the primary cause of climate change is anthropogenic greenhouse gas (GHG) emissions. Reducing GHG emissions from these sources is a key part of the United States’ strategy to reduce the impacts of these global-warming emissions. As a result of the recent focus on GHG emissions, the U.S. Environmental Protection Agency (EPA) and state agencies are implementing policies and programs to quantify and regulate GHG emissions from key emitting sources in the United States. These policies and programs have generated a need for a reliable source of information regarding GHG mitigation options for both industry and regulators. In response to this need, EPA developed a comprehensive GHG mitigation options database (GMOD) that was compiled based on information from industry, government research agencies, and academia. The GMOD and Tool (GMODT) is a comprehensive data repository and analytical tool being developed by EPA to evaluate alternative GHG mitigation options for several high-emitting industry sectors, including electric power plants, cement plants, refineries, landfills and other industrial sources of GHGs. The data is collected from credible sources including peer-reviewed journals, reports, and others government and academia data sources which include performance, applicability, develop

Sea Level Station Metadata for Tsunami Detection, Warning and Research

NASA Astrophysics Data System (ADS)

Stroker, K. J.; Marra, J.; Kari, U. S.; Weinstein, S. A.; Kong, L.

2007-12-01

The devastating earthquake and tsunami of December 26, 2004 has greatly increased recognition of the need for water level data both from the coasts and the deep-ocean. In 2006, the National Oceanic and Atmospheric Administration (NOAA) completed a Tsunami Data Management Report describing the management of data required to minimize the impact of tsunamis in the United States. One of the major gaps defined in this report is the access to global coastal water level data. NOAA's National Geophysical Data Center (NGDC) and National Climatic Data Center (NCDC) are working cooperatively to bridge this gap. NOAA relies on a network of global data, acquired and processed in real-time to support tsunami detection and warning, as well as high-quality global databases of archived data to support research and advanced scientific modeling. In 2005, parties interested in enhancing the access and use of sea level station data united under the NOAA NCDC's Integrated Data and Environmental Applications (IDEA) Center's Pacific Region Integrated Data Enterprise (PRIDE) program to develop a distributed metadata system describing sea level stations (Kari et. al., 2006; Marra et.al., in press). This effort started with pilot activities in a regional framework and is targeted at tsunami detection and warning systems being developed by various agencies. It includes development of the components of a prototype sea level station metadata web service and accompanying Google Earth-based client application, which use an XML-based schema to expose, at a minimum, information in the NOAA National Weather Service (NWS) Pacific Tsunami Warning Center (PTWC) station database needed to use the PTWC's Tide Tool application. As identified in the Tsunami Data Management Report, the need also exists for long-term retention of the sea level station data. NOAA envisions that the retrospective water level data and metadata will also be available through web services, using an XML-based schema. Five high-priority metadata requirements identified at a water level workshop held at the XXIV IUGG Meeting in Perugia will be addressed: consistent, validated, and well defined numbers (e.g. amplitude); exact location of sea level stations; a complete record of sea level data stored in the archive; identifying high-priority sea level stations; and consistent definitions. NOAA's National Geophysical Data Center (NGDC) and co-located World Data Center for Solid Earth Geophysics (including tsunamis) would hold the archive of the sea level station data and distribute the standard metadata. Currently, NGDC is also archiving and distributing the DART buoy deep-ocean water level data and metadata in standards based formats. Kari, Uday S., John J. Marra, Stuart A. Weinstein, 2006 A Tsunami Focused Data Sharing Framework For Integration of Databases that Describe Water Level Station Specifications. AGU Fall Meeting, 2006. San Francisco, California. Marra, John, J., Uday S. Kari, and Stuart A. Weinstein (in press). A Tsunami Detection and Warning-focused Sea Level Station Metadata Web Service. IUGG XXIV, July 2-13, 2007. Perugia, Italy.

A systematic review of Investigator Global Assessment (IGA) in atopic dermatitis (AD) trials: Many options, no standards.

PubMed

Futamura, Masaki; Leshem, Yael A; Thomas, Kim S; Nankervis, Helen; Williams, Hywel C; Simpson, Eric L

2016-02-01

Investigators often use global assessments to provide a snapshot of overall disease severity in dermatologic clinical trials. Although easy to perform, the frequency of use and standardization of global assessments in studies of atopic dermatitis (AD) is unclear. We sought to assess the frequency, definitions, and methods of analysis of Investigator Global Assessment in randomized controlled trials of AD. We conducted a systematic review using all published randomized controlled trials of AD treatments in the Global Resource of Eczema Trials database (2000-2014). We determined the frequency of global scales application and defining features. Among 317 trials identified, 101 trials (32%) used an investigator-performed global assessment as an outcome measure. There was large variability in global assessments between studies in nomenclature, scale size, definitions, outcome description, and analysis. Both static and dynamic scales were identified that ranged from 4- to 7-point scales. North American studies used global assessments more commonly than studies from other countries. The search was restricted to the Global Resource of Eczema Trials database. Global assessments are used frequently in studies of AD, but their complete lack of standardized definitions and implementation preclude any meaningful comparisons between studies, which in turn impedes data synthesis to inform clinical decision-making. Standardization is urgently required. Copyright © 2015. Published by Elsevier Inc.

A global database of lake surface temperatures collected by in situ and satellite methods from 1985–2009

PubMed Central

Sharma, Sapna; Gray, Derek K; Read, Jordan S; O’Reilly, Catherine M; Schneider, Philipp; Qudrat, Anam; Gries, Corinna; Stefanoff, Samantha; Hampton, Stephanie E; Hook, Simon; Lenters, John D; Livingstone, David M; McIntyre, Peter B; Adrian, Rita; Allan, Mathew G; Anneville, Orlane; Arvola, Lauri; Austin, Jay; Bailey, John; Baron, Jill S; Brookes, Justin; Chen, Yuwei; Daly, Robert; Dokulil, Martin; Dong, Bo; Ewing, Kye; de Eyto, Elvira; Hamilton, David; Havens, Karl; Haydon, Shane; Hetzenauer, Harald; Heneberry, Jocelyne; Hetherington, Amy L; Higgins, Scott N; Hixson, Eric; Izmest’eva, Lyubov R; Jones, Benjamin M; Kangur, Külli; Kasprzak, Peter; Köster, Olivier; Kraemer, Benjamin M; Kumagai, Michio; Kuusisto, Esko; Leshkevich, George; May, Linda; MacIntyre, Sally; Müller-Navarra, Dörthe; Naumenko, Mikhail; Noges, Peeter; Noges, Tiina; Niederhauser, Pius; North, Ryan P; Paterson, Andrew M; Plisnier, Pierre-Denis; Rigosi, Anna; Rimmer, Alon; Rogora, Michela; Rudstam, Lars; Rusak, James A; Salmaso, Nico; Samal, Nihar R; Schindler, Daniel E; Schladow, Geoffrey; Schmidt, Silke R; Schultz, Tracey; Silow, Eugene A; Straile, Dietmar; Teubner, Katrin; Verburg, Piet; Voutilainen, Ari; Watkinson, Andrew; Weyhenmeyer, Gesa A; Williamson, Craig E; Woo, Kara H

2015-01-01

Global environmental change has influenced lake surface temperatures, a key driver of ecosystem structure and function. Recent studies have suggested significant warming of water temperatures in individual lakes across many different regions around the world. However, the spatial and temporal coherence associated with the magnitude of these trends remains unclear. Thus, a global data set of water temperature is required to understand and synthesize global, long-term trends in surface water temperatures of inland bodies of water. We assembled a database of summer lake surface temperatures for 291 lakes collected in situ and/or by satellites for the period 1985–2009. In addition, corresponding climatic drivers (air temperatures, solar radiation, and cloud cover) and geomorphometric characteristics (latitude, longitude, elevation, lake surface area, maximum depth, mean depth, and volume) that influence lake surface temperatures were compiled for each lake. This unique dataset offers an invaluable baseline perspective on global-scale lake thermal conditions as environmental change continues. PMID:25977814

A global database of lake surface temperatures collected by in situ and satellite methods from 1985-2009.

PubMed

Sharma, Sapna; Gray, Derek K; Read, Jordan S; O'Reilly, Catherine M; Schneider, Philipp; Qudrat, Anam; Gries, Corinna; Stefanoff, Samantha; Hampton, Stephanie E; Hook, Simon; Lenters, John D; Livingstone, David M; McIntyre, Peter B; Adrian, Rita; Allan, Mathew G; Anneville, Orlane; Arvola, Lauri; Austin, Jay; Bailey, John; Baron, Jill S; Brookes, Justin; Chen, Yuwei; Daly, Robert; Dokulil, Martin; Dong, Bo; Ewing, Kye; de Eyto, Elvira; Hamilton, David; Havens, Karl; Haydon, Shane; Hetzenauer, Harald; Heneberry, Jocelyne; Hetherington, Amy L; Higgins, Scott N; Hixson, Eric; Izmest'eva, Lyubov R; Jones, Benjamin M; Kangur, Külli; Kasprzak, Peter; Köster, Olivier; Kraemer, Benjamin M; Kumagai, Michio; Kuusisto, Esko; Leshkevich, George; May, Linda; MacIntyre, Sally; Müller-Navarra, Dörthe; Naumenko, Mikhail; Noges, Peeter; Noges, Tiina; Niederhauser, Pius; North, Ryan P; Paterson, Andrew M; Plisnier, Pierre-Denis; Rigosi, Anna; Rimmer, Alon; Rogora, Michela; Rudstam, Lars; Rusak, James A; Salmaso, Nico; Samal, Nihar R; Schindler, Daniel E; Schladow, Geoffrey; Schmidt, Silke R; Schultz, Tracey; Silow, Eugene A; Straile, Dietmar; Teubner, Katrin; Verburg, Piet; Voutilainen, Ari; Watkinson, Andrew; Weyhenmeyer, Gesa A; Williamson, Craig E; Woo, Kara H

2015-01-01

Global environmental change has influenced lake surface temperatures, a key driver of ecosystem structure and function. Recent studies have suggested significant warming of water temperatures in individual lakes across many different regions around the world. However, the spatial and temporal coherence associated with the magnitude of these trends remains unclear. Thus, a global data set of water temperature is required to understand and synthesize global, long-term trends in surface water temperatures of inland bodies of water. We assembled a database of summer lake surface temperatures for 291 lakes collected in situ and/or by satellites for the period 1985-2009. In addition, corresponding climatic drivers (air temperatures, solar radiation, and cloud cover) and geomorphometric characteristics (latitude, longitude, elevation, lake surface area, maximum depth, mean depth, and volume) that influence lake surface temperatures were compiled for each lake. This unique dataset offers an invaluable baseline perspective on global-scale lake thermal conditions as environmental change continues.

A global database of lake surface temperatures collected by in situ and satellite methods from 1985–2009

USGS Publications Warehouse

Sharma, Sapna; Gray, Derek; Read, Jordan S.; O'Reilly, Catherine; Schneider, Philipp; Qudrat, Anam; Gries, Corinna; Stefanoff, Samantha; Hampton, Stephanie; Hook, Simon; Lenters, John; Livingstone, David M.; McIntyre, Peter B.; Adrian, Rita; Allan, Mathew; Anneville, Orlane; Arvola, Lauri; Austin, Jay; Bailey, John E.; Baron, Jill S.; Brookes, Justin D; Chen, Yuwei; Daly, Robert; Ewing, Kye; de Eyto, Elvira; Dokulil, Martin; Hamilton, David B.; Havens, Karl; Haydon, Shane; Hetzenaeur, Harald; Heneberry, Jocelyn; Hetherington, Amy; Higgins, Scott; Hixson, Eric; Izmest'eva, Lyubov; Jones, Benjamin M.; Kangur, Kulli; Kasprzak, Peter; Kraemer, Benjamin; Kumagai, Michio; Kuusisto, Esko; Leshkevich, George; May, Linda; MacIntyre, Sally; Dörthe Müller-Navarra,; Naumenko, Mikhail; Noges, Peeter; Noges, Tiina; Pius Niederhauser,; North, Ryan P.; Andrew Paterson,; Plisnier, Pierre-Denis; Rigosi, Anna; Rimmer, Alon; Rogora, Michela; Rudstam, Lars G.; Rusak, James A.; Salmaso, Nico; Samal, Nihar R.; Daniel E. Schindler,; Geoffrey Schladow,; Schmidt, Silke R.; Tracey Schultz,; Silow, Eugene A.; Straile, Dietmar; Teubner, Katrin; Verburg, Piet; Voutilainen, Ari; Watkinson, Andrew; Weyhenmeyer, Gesa A.; Craig E. Williamson,; Kara H. Woo,

2015-01-01

Global environmental change has influenced lake surface temperatures, a key driver of ecosystem structure and function. Recent studies have suggested significant warming of water temperatures in individual lakes across many different regions around the world. However, the spatial and temporal coherence associated with the magnitude of these trends remains unclear. Thus, a global data set of water temperature is required to understand and synthesize global, long-term trends in surface water temperatures of inland bodies of water. We assembled a database of summer lake surface temperatures for 291 lakes collected in situ and/or by satellites for the period 1985–2009. In addition, corresponding climatic drivers (air temperatures, solar radiation, and cloud cover) and geomorphometric characteristics (latitude, longitude, elevation, lake surface area, maximum depth, mean depth, and volume) that influence lake surface temperatures were compiled for each lake. This unique dataset offers an invaluable baseline perspective on global-scale lake thermal conditions as environmental change continues.

Oceanic residual depth measurements, the plate cooling model, and global dynamic topography

NASA Astrophysics Data System (ADS)

Hoggard, Mark J.; Winterbourne, Jeff; Czarnota, Karol; White, Nicky

2017-03-01

Convective circulation of the mantle causes deflections of the Earth's surface that vary as a function of space and time. Accurate measurements of this dynamic topography are complicated by the need to isolate and remove other sources of elevation, arising from flexure and lithospheric isostasy. The complex architecture of continental lithosphere means that measurement of present-day dynamic topography is more straightforward in the oceanic realm. Here we present an updated methodology for calculating oceanic residual bathymetry, which is a proxy for dynamic topography. Corrections are applied that account for the effects of sedimentary loading and compaction, for anomalous crustal thickness variations, for subsidence of oceanic lithosphere as a function of age and for non-hydrostatic geoid height variations. Errors are formally propagated to estimate measurement uncertainties. We apply this methodology to a global database of 1936 seismic surveys located on oceanic crust and generate 2297 spot measurements of residual topography, including 1161 with crustal corrections. The resultant anomalies have amplitudes of ±1 km and wavelengths of ˜1000 km. Spectral analysis of our database using cross-validation demonstrates that spherical harmonics up to and including degree 30 (i.e., wavelengths down to 1300 km) are required to accurately represent these observations. Truncation of the expansion at a lower maximum degree erroneously increases the amplitude of inferred long-wavelength dynamic topography. There is a strong correlation between our observations and free-air gravity anomalies, magmatism, ridge seismicity, vertical motions of adjacent rifted margins, and global tomographic models. We infer that shorter wavelength components of the observed pattern of dynamic topography may be attributable to the presence of thermal anomalies within the shallow asthenospheric mantle.

Efficacy, tolerability, and safety of hypnosis in adult irritable bowel syndrome: systematic review and meta-analysis.

PubMed

Schaefert, Rainer; Klose, Petra; Moser, Gabriele; Häuser, Winfried

2014-06-01

To assess the efficacy, tolerability, and safety of hypnosis in adult irritable bowel syndrome by a meta-analysis of randomized controlled trials. Studies were identified by a literature search of the databases Allied and Complementary Medicine Database, Central Register of Controlled Trials, Cumulative Index to Nursing and Allied Health Literature, PubMed, PsycINFO, and Scopus (from inception to June 30, 2013). Primary outcomes were adequate symptom relief, global gastrointestinal score, and safety. Summary relative risks (RRs) with number needed to treat (NNT) and standardized mean differences (SMDs) with 95% confidence intervals (95% CIs) were calculated using random-effects models. Eight randomized controlled trials with a total of 464 patients and a median of 8.5 (7-12) hypnosis sessions over a median of 12 (5-12) weeks were included into the analysis. At the end of therapy, hypnosis was superior to control conditions in producing adequate symptom relief (RR, 1.69 [95% CI = 1.14-2.51]; NNT, 5 [3-10]) and in reducing global gastrointestinal score (SMD, 0.32 [95% CI = -0.56 to -0.08]). At long-term follow-up, hypnosis was superior to controls in adequate symptom relief (RR, 2.17 [95% CI = 1.22-3.87]; NNT, 3 [2-10]), but not in reducing global gastrointestinal score (SMD, -0.57 [-1.40 to 0.26]). One (0.4%) of 238 patients in the hypnosis group dropped out due to an adverse event (panic attack). This meta-analysis demonstrated that hypnosis was safe and provided long-term adequate symptom relief in 54% of patients with irritable bowel syndrome refractory to conventional therapy.

Global Scale Remote Sensing Monitoring of Endorheic Lake Systems

NASA Astrophysics Data System (ADS)

Scuderi, L. A.

2010-12-01

Semi-arid regions of the world contain thousands of endorheic lakes in large shallow basins. Due to their generally remote locations few are continuously monitored. Documentation of recent variability is essential to assessing how endorheic lakes respond to short-term meteorological conditions and longer-term decadal-scale climatic variability and is critical in determining future disturbance of hydrological regimes with respect to predicted warming and drying in the mid-latitudes. Short- and long-term departures from climatic averages, rapid environmental shifts and increased population pressures may result in significant fluctuations in the hydrologic budgets of these lakes and adversely impact endorheic lake/basin ecosystems. Information on flooding variability is also critical in estimating changes in P/E balances and on the production of exposed and easily deflated surfaces that may impact dust loading locally and regionally. In order to provide information on how these lakes respond we need to understand how entire systems respond hydrologically to different climatic inputs. This requires monitoring and analysis of regional to continental-scale systems. To date, this level of monitoring has not been achieved in an operational system. In order to assess the possibility of creating a global-scale lake inundation database we analyzed two contrasting lake systems in western North America (Mexico and New Mexico, USA) and China (Inner Mongolia). We asked two major questions: 1) is it possible to quickly and accurately quantify current lake inundation events in near real time using remote sensing? and, 2) is it possible to differentiate variable meteorological sources and resultant lake inundation responses using this type of database? With respect to these results we outline an automated lake monitoring approach using MODIS data and real-time processing systems that may provide future global monitoring capabilities.

Multidatabase Query Processing with Uncertainty in Global Keys and Attribute Values.

ERIC Educational Resources Information Center

Scheuermann, Peter; Li, Wen-Syan; Clifton, Chris

1998-01-01

Presents an approach for dynamic database integration and query processing in the absence of information about attribute correspondences and global IDs. Defines different types of equivalence conditions for the construction of global IDs. Proposes a strategy based on ranked role-sets that makes use of an automated semantic integration procedure…

BETR Global - A geographically explicit global-scale multimedia contaminant fate model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Macleod, M.; Waldow, H. von; Tay, P.

2011-04-01

We present two new software implementations of the BETR Global multimedia contaminant fate model. The model uses steady-state or non-steady-state mass-balance calculations to describe the fate and transport of persistent organic pollutants using a desktop computer. The global environment is described using a database of long-term average monthly conditions on a 15{sup o} x 15{sup o} grid. We demonstrate BETR Global by modeling the global sources, transport, and removal of decamethylcyclopentasiloxane (D5).

Dependency of global primary bioenergy crop potentials in 2050 on food systems, yields, biodiversity conservation and political stability.

PubMed

Erb, Karl-Heinz; Haberl, Helmut; Plutzar, Christoph

2012-08-01

The future bioenergy crop potential depends on (1) changes in the food system (food demand, agricultural technology), (2) political stability and investment security, (3) biodiversity conservation, (4) avoidance of long carbon payback times from deforestation, and (5) energy crop yields. Using a biophysical biomass-balance model, we analyze how these factors affect global primary bioenergy potentials in 2050. The model calculates biomass supply and demand balances for eleven world regions, eleven food categories, seven food crop types and two livestock categories, integrating agricultural forecasts and scenarios with a consistent global land use and NPP database. The TREND scenario results in a global primary bioenergy potential of 77 EJ/yr, alternative assumptions on food-system changes result in a range of 26-141 EJ/yr. Exclusion of areas for biodiversity conservation and inaccessible land in failed states reduces the bioenergy potential by up to 45%. Optimistic assumptions on future energy crop yields increase the potential by up to 48%, while pessimistic assumptions lower the potential by 26%. We conclude that the design of sustainable bioenergy crop production policies needs to resolve difficult trade-offs such as food vs. energy supply, renewable energy vs. biodiversity conservation or yield growth vs. reduction of environmental problems of intensive agriculture.

Dependency of global primary bioenergy crop potentials in 2050 on food systems, yields, biodiversity conservation and political stability

PubMed Central

Erb, Karl-Heinz; Haberl, Helmut; Plutzar, Christoph

2012-01-01

The future bioenergy crop potential depends on (1) changes in the food system (food demand, agricultural technology), (2) political stability and investment security, (3) biodiversity conservation, (4) avoidance of long carbon payback times from deforestation, and (5) energy crop yields. Using a biophysical biomass-balance model, we analyze how these factors affect global primary bioenergy potentials in 2050. The model calculates biomass supply and demand balances for eleven world regions, eleven food categories, seven food crop types and two livestock categories, integrating agricultural forecasts and scenarios with a consistent global land use and NPP database. The TREND scenario results in a global primary bioenergy potential of 77 EJ/yr, alternative assumptions on food-system changes result in a range of 26–141 EJ/yr. Exclusion of areas for biodiversity conservation and inaccessible land in failed states reduces the bioenergy potential by up to 45%. Optimistic assumptions on future energy crop yields increase the potential by up to 48%, while pessimistic assumptions lower the potential by 26%. We conclude that the design of sustainable bioenergy crop production policies needs to resolve difficult trade-offs such as food vs. energy supply, renewable energy vs. biodiversity conservation or yield growth vs. reduction of environmental problems of intensive agriculture. PMID:23576836

Compulsory licensing often did not produce lower prices for antiretrovirals compared to international procurement.

PubMed

Beall, Reed F; Kuhn, Randall; Attaran, Amir

2015-03-01

Compulsory licensing has been widely suggested as a legal mechanism for bypassing patents to introduce lower-cost generic antiretrovirals for HIV/AIDS in developing countries. Previous studies found that compulsory licensing can reduce procurement prices for drugs, but it is unknown how the resulting prices compare to procurements through the Global Fund to Fight AIDS, Tuberculosis, and Malaria; UNICEF; and other international channels. For this study we systematically constructed a case-study database of compulsory licensing activity for antiretrovirals and compared compulsory license prices to those in the World Health Organization's (WHO's) Global Price Reporting Mechanism and the Global Fund's Price and Quality Reporting Tool. Thirty compulsory license cases were analyzed with 673 comparable procurements from WHO and Global Fund data. Compulsory license prices exceeded the median international procurement prices in nineteen of the thirty case studies, often with a price gap of more than 25 percent. Compulsory licensing often delivered suboptimal value when compared to the alternative of international procurement, especially when used by low-income countries to manufacture medicines locally. There is an ongoing need for multilateral and charitable actors to work collectively with governments and medicine suppliers on policy options. Project HOPE—The People-to-People Health Foundation, Inc.

Measuring Progress Toward Universal Health Coverage: Does the Monitoring Framework of Bangladesh Need Further Improvement?

PubMed Central

Shahabuddin, ASM

2018-01-01

This review aimed to compare Bangladesh’s Universal Health Coverage (UHC) monitoring framework with the global-level recommendations and to find out the existing gaps of Bangladesh’s UHC monitoring framework compared to the global recommendations. In order to reach the aims of the review, we systematically searched two electronic databases - PubMed and Google Scholar - by using appropriate keywords to select articles that describe issues related to UHC and the monitoring framework of UHC applied globally and particularly in Bangladesh. Four relevant documents were found and synthesized. The review found that Bangladesh incorporated all of the recommendations suggested by the global monitoring framework regarding mentoring the financial risk protection and equity perspective. However, a significant gap in the monitoring framework related to service coverage was observed. Although Bangladesh has a significant burden of mental illnesses, cataract, and neglected tropical diseases, indicators related to these issues were absent in Bangladesh’s UHC framework. Moreover, palliative-care-related indicators were completely missing in the framework. The results of this review suggest that Bangladesh should incorporate these indicators in their UHC monitoring framework in order to track the progress of the country toward UHC more efficiently and in a robust way. PMID:29541562

A new natural hazards data-base for volcanic ash and SO2 from global satellite remote sensing measurements

NASA Astrophysics Data System (ADS)

Stebel, Kerstin; Prata, Fred; Theys, Nicolas; Tampellini, Lucia; Kamstra, Martijn; Zehner, Claus

2014-05-01

Over the last few years there has been a recognition of the utility of satellite measurements to identify and track volcanic emissions that present a natural hazard to human populations. Mitigation of the volcanic hazard to life and the environment requires understanding of the properties of volcanic emissions, identifying the hazard in near real-time and being able to provide timely and accurate forecasts to affected areas. Amongst the many ways to measure volcanic emissions, satellite remote sensing is capable of providing global quantitative retrievals of important microphysical parameters such as ash mass loading, ash particle effective radius, infrared optical depth, SO2 partial and total column abundance, plume altitude, aerosol optical depth and aerosol absorbing index. The eruption of Eyjafjallajökull in April May, 2010 led to increased research and measurement programs to better characterize properties of volcanic ash and the need to establish a data-base in which to store and access these data was confirmed. The European Space Agency (ESA) has recognized the importance of having a quality controlled data-base of satellite retrievals and has funded an activity called Volcanic Ash Strategic Initiative Team VAST (vast.nilu.no) to develop novel remote sensing retrieval schemes and a data-base, initially focused on several recent hazardous volcanic eruptions. In addition, the data-base will host satellite and validation data sets provided from the ESA projects Support to Aviation Control Service SACS (sacs.aeronomie.be) and Study on an end-to-end system for volcanic ash plume monitoring and prediction SMASH. Starting with data for the eruptions of Eyjafjallajökull, Grímsvötn, and Kasatochi, satellite retrievals for Puyhue-Cordon Caulle, Nabro, Merapi, Okmok, Kasatochi and Sarychev Peak will eventually be ingested. Dispersion model simulations are also being included in the data-base. Several atmospheric dispersion models (FLEXPART, SILAM and WRF-Chem) are used in VAST to simulate the dispersion of volcanic ash and SO2 emitted during an eruption. Source terms and dispersion model results will be given. In time, data from conventional in situ sampling instruments, airborne and ground-based remote sensing platforms and other meta-data (bulk ash and gas properties, volcanic setting, volcanic eruption chronologies, potential impacts etc.) will be added. Important applications of the data-base are illustrated related to the ash/aviation problem and to estimating SO2 fluxes from active volcanoes-as a means to diagnose future unrest. The data-base has the potential to provide the natural hazards community with a dynamic atmospheric volcanic hazards map and will be a valuable tool particularly for aviation.

Global GIS database; digital atlas of South Pacific

USGS Publications Warehouse

Hearn, P.P.; Hare, T.M.; Schruben, P.; Sherrill, D.; LaMar, C.; Tsushima, P.

2001-01-01

This CD-ROM contains a digital atlas of the countries of the South Pacific. This atlas is part of a global database compiled from USGS and other data sources at a nominal scale of 1:1 million and is intended to be used as a regional-scale reference and analytical tool by government officials, researchers, the private sector, and the general public. The atlas includes free GIS software or may be used with ESRI's ArcView software. Customized ArcView tools, specifically designed to make the atlas easier to use, are also included.

Global GIS database; digital atlas of Africa

USGS Publications Warehouse

Hearn, P.P.; Hare, T.M.; Schruben, P.; Sherrill, D.; LaMar, C.; Tsushima, P.

2001-01-01

This CD-ROM contains a digital atlas of the countries of Africa. This atlas is part of a global database compiled from USGS and other data sources at a nominal scale of 1:1 million and is intended to be used as a regional-scale reference and analytical tool by government officials, researchers, the private sector, and the general public. The atlas includes free GIS software or may be used with ESRI's ArcView software. Customized ArcView tools, specifically designed to make this atlas easier to use, are also included.

Global GIS database; digital atlas of South Asia

USGS Publications Warehouse

Hearn, P.P.; Hare, T.M.; Schruben, P.; Sherrill, D.; LaMar, C.; Tsushima, P.

2001-01-01

This CD-ROM contains a digital atlas of the countries of South Asia. This atlas is part of a global database compiled from USGS and other data sources at a nominal scale 1:1 million and is intended to be used as a regional-scale reference and analytical tool by government officials, researchers, the private sector, and the general public. The atlas includes free GIS software or may be used with ESRI's ArcView software. Customized ArcView tools, specifically designed to make the atlas easier to use, are also included.

Progress and Challenges in Developing Reference Data Layers for Human Population Distribution and Built Infrastructure

NASA Astrophysics Data System (ADS)

Chen, R. S.; Yetman, G.; de Sherbinin, A. M.

2015-12-01

Understanding the interactions between environmental and human systems, and in particular supporting the applications of Earth science data and knowledge in place-based decision making, requires systematic assessment of the distribution and dynamics of human population and the built human infrastructure in conjunction with environmental variability and change. The NASA Socioeconomic Data and Applications Center (SEDAC) operated by the Center for International Earth Science Information Network (CIESIN) at Columbia University has had a long track record in developing reference data layers for human population and settlements and is expanding its efforts on topics such as intercity roads, reservoirs and dams, and energy infrastructure. SEDAC has set as a strategic priority the acquisition, development, and dissemination of data resources derived from remote sensing and socioeconomic data on urban land use change, including temporally and spatially disaggregated data on urban change and rates of change, the built infrastructure, and critical facilities. We report here on a range of past and ongoing activities, including the Global Human Settlements Layer effort led by the European Commission's Joint Research Centre (JRC), the Global Exposure Database for the Global Earthquake Model (GED4GEM) project, the Global Roads Open Access Data Working Group (gROADS) of the Committee on Data for Science and Technology (CODATA), and recent work with ImageCat, Inc. to improve estimates of the exposure and fragility of buildings, road and rail infrastructure, and other facilities with respect to selected natural hazards. New efforts such as the proposed Global Human Settlement indicators initiative of the Group on Earth Observations (GEO) could help fill critical gaps and link potential reference data layers with user needs. We highlight key sectors and themes that require further attention, and the many significant challenges that remain in developing comprehensive, high quality, up-to-date, and well maintained reference data layers on population and built infrastructure. The need for improved indicators of sustainable development in the context of the post-2015 development framework provides an opportunity to link data efforts directly with international development needs and investments.

Bibliometric analysis of global migration health research in peer-reviewed literature (2000-2016).

PubMed

Sweileh, Waleed M; Wickramage, Kolitha; Pottie, Kevin; Hui, Charles; Roberts, Bayard; Sawalha, Ansam F; Zyoud, Saed H

2018-06-20

The health of migrants has become an important issue in global health and foreign policy. Assessing the current status of research activity and identifying gaps in global migration health (GMH) is an important step in mapping the evidence-base and on advocating health needs of migrants and mobile populations. The aim of this study was to analyze globally published peer-reviewed literature in GMH. A bibliometric analysis methodology was used. The Scopus database was used to retrieve documents in peer-reviewed journals in GMH for the study period from 2000 to 2016. A group of experts in GMH developed the needed keywords and validated the final search strategy. The number of retrieved documents was 21,457. Approximately one third (6878; 32.1%) of the retrieved documents were published in the last three years of the study period. In total, 5451 (25.4%) documents were about refugees and asylum seekers, while 1328 (6.2%) were about migrant workers, 440 (2.1%) were about international students, 679 (3.2%) were about victims of human trafficking/smuggling, 26 (0.1%) were about patients' mobility across international borders, and the remaining documents were about unspecified categories of migrants. The majority of the retrieved documents (10,086; 47.0%) were in psychosocial and mental health domain, while 2945 (13.7%) documents were in infectious diseases, 6819 (31.8%) documents were in health policy and systems, 2759 (12.8%) documents were in maternal and reproductive health, and 1918 (8.9%) were in non-communicable diseases. The contribution of authors and institutions in Asian countries, Latin America, Africa, Middle East, and Eastern European countries was low. Literature in GMH represents the perspectives of high-income migrant destination countries. Our heat map of research output shows that despite the ever-growing prominence of human mobility across the globe, and Sustainable Development Goals of leaving no one behind, research output on migrants' health is not consistent with the global migration pattern. A stronger evidence base is needed to enable authorities to make evidence-informed decisions on migration health policy and practice. Research collaboration and networks should be encouraged to prioritize research in GMH.

Introduction to the enhanced logistics intratheater support tool (ELIST) mission application and its segments : global data segment version 8.1.0.0, database instance segment version 8.1.0.0, database fill segment version 8.1.0.0, database segment versio

DOT National Transportation Integrated Search

2002-02-26

This document, the Introduction to the Enhanced Logistics Intratheater Support Tool (ELIST) Mission Application and its Segments, satisfies the following objectives: : It identifies the mission application, known in brief as ELIST, and all seven ...

Global distribution of soil organic carbon, based on the Harmonized World Soil Database - Part 1: Masses and frequency distribution of SOC stocks for the tropics, permafrost regions, wetlands, and the world

NASA Astrophysics Data System (ADS)

Köchy, M.; Hiederer, R.; Freibauer, A.

2014-09-01

The global soil organic carbon (SOC) mass is relevant for the carbon cycle budget. We review current estimates of soil organic carbon stocks (mass/area) and mass (stock × area) in wetlands, permafrost and tropical regions and the world in the upper 1 m of soil. The Harmonized World Soil Database (HWSD) v.1.2 provides one of the most recent and coherent global data sets of SOC, giving a total mass of 2476 Pg. Correcting the HWSD's bulk density of organic soils, especially Histosols, results in a mass of 1062 Pg. The uncertainty of bulk density of Histosols alone introduces a range of -56 to +180 Pg for the estimate of global SOC in the top 1 m, larger than estimates of global soil respiration. We report the spatial distribution of SOC stocks per 0.5 arc minutes, the areal masses of SOC and the quantiles of SOC stocks by continents, wetland types, and permafrost types. Depending on the definition of "wetland", wetland soils contain between 82 and 158 Pg SOC. Incorporating more detailed estimates for permafrost from the Northern Circumpolar Soil Carbon Data Base (496 Pg SOC) and tropical peatland carbon, global soils contain 1324 Pg SOC in the upper 1 m including 421 Pg in tropical soils, whereof 40 Pg occur in tropical wetlands. Global SOC amounts to just under 3000 Pg when estimates for deeper soil layers are included. Variability in estimates is due to variation in definitions of soil units, differences in soil property databases, scarcity of information about soil carbon at depths > 1 m in peatlands, and variation in definitions of "peatland".

Scale-Independent Relational Query Processing

DTIC Science & Technology

2013-10-04

source options are also available, including Postgresql, MySQL , and SQLite. These mod- ern relational databases are generally very complex software systems...and Their Application to Data Stream Management. IGI Global, 2010. [68] George Reese. Database Programming with JDBC and Java , Second Edition. Ed. by

Is More Always Better?

ERIC Educational Resources Information Center

Bell, Steven J.

2003-01-01

Discusses full-text databases and whether existing aggregator databases are meeting user needs. Topics include the need for better search interfaces; concepts of quality research and information retrieval; information overload; full text in electronic journal collections versus aggregator databases; underrepresentation of certain disciplines; and…

Optimal Stomatal Behaviour Around the World: Synthesis of a Global Stomatal Conductance Database and Scaling from Leaf to Ecosystem

NASA Astrophysics Data System (ADS)

Lin, Y. S.; Medlyn, B. E.; Duursma, R.; Prentice, I. C.; Wang, H.

2014-12-01

Stomatal conductance (gs) is a key land surface attribute as it links transpiration, the dominant component of global land evapotranspiration and a key element of the global water cycle, and photosynthesis, the driving force of the global carbon cycle. Despite the pivotal role of gs in predictions of global water and carbon cycles, a global scale database and an associated globally applicable model of gs that allow predictions of stomatal behaviour are lacking. We present a unique database of globally distributed gs obtained in the field for a wide range of plant functional types (PFTs) and biomes. We employed a model of optimal stomatal conductance to assess differences in stomatal behaviour, and estimated the model slope coefficient, g1, which is directly related to the marginal carbon cost of water, for each dataset. We found that g1 varies considerably among PFTs, with evergreen savanna trees having the largest g1 (least conservative water use), followed by C3 grasses and crops, angiosperm trees, gymnosperm trees, and C4 grasses. Amongst angiosperm trees, species with higher wood density had a higher marginal carbon cost of water, as predicted by the theory underpinning the optimal stomatal model. There was an interactive effect between temperature and moisture availability on g1: for wet environments, g1 was largest in high temperature environments, indicated by high mean annual temperature during the period when temperature above 0oC (Tm), but it did not vary with Tm across dry environments. We examine whether these differences in leaf-scale behaviour are reflected in ecosystem-scale differences in water-use efficiency. These findings provide a robust theoretical framework for understanding and predicting the behaviour of stomatal conductance across biomes and across PFTs that can be applied to regional, continental and global-scale modelling of productivity and ecohydrological processes in a future changing climate.

Toward An Unstructured Mesh Database

NASA Astrophysics Data System (ADS)

Rezaei Mahdiraji, Alireza; Baumann, Peter Peter

2014-05-01

Unstructured meshes are used in several application domains such as earth sciences (e.g., seismology), medicine, oceanography, cli- mate modeling, GIS as approximate representations of physical objects. Meshes subdivide a domain into smaller geometric elements (called cells) which are glued together by incidence relationships. The subdivision of a domain allows computational manipulation of complicated physical structures. For instance, seismologists model earthquakes using elastic wave propagation solvers on hexahedral meshes. The hexahedral con- tains several hundred millions of grid points and millions of hexahedral cells. Each vertex node in the hexahedrals stores a multitude of data fields. To run simulation on such meshes, one needs to iterate over all the cells, iterate over incident cells to a given cell, retrieve coordinates of cells, assign data values to cells, etc. Although meshes are used in many application domains, to the best of our knowledge there is no database vendor that support unstructured mesh features. Currently, the main tool for querying and manipulating unstructured meshes are mesh libraries, e.g., CGAL and GRAL. Mesh li- braries are dedicated libraries which includes mesh algorithms and can be run on mesh representations. The libraries do not scale with dataset size, do not have declarative query language, and need deep C++ knowledge for query implementations. Furthermore, due to high coupling between the implementations and input file structure, the implementations are less reusable and costly to maintain. A dedicated mesh database offers the following advantages: 1) declarative querying, 2) ease of maintenance, 3) hiding mesh storage structure from applications, and 4) transparent query optimization. To design a mesh database, the first challenge is to define a suitable generic data model for unstructured meshes. We proposed ImG-Complexes data model as a generic topological mesh data model which extends incidence graph model to multi-incidence relationships. We instrument ImG model with sets of optional and application-specific constraints which can be used to check validity of meshes for a specific class of object such as manifold, pseudo-manifold, and simplicial manifold. We conducted experiments to measure the performance of the graph database solution in processing mesh queries and compare it with GrAL mesh library and PostgreSQL database on synthetic and real mesh datasets. The experiments show that each system perform well on specific types of mesh queries, e.g., graph databases perform well on global path-intensive queries. In the future, we investigate database operations for the ImG model and design a mesh query language.

The ChArMEx database

NASA Astrophysics Data System (ADS)

Ferré, Hélène; Belmahfoud, Nizar; Boichard, Jean-Luc; Brissebrat, Guillaume; Cloché, Sophie; Descloitres, Jacques; Fleury, Laurence; Focsa, Loredana; Henriot, Nicolas; Mière, Arnaud; Ramage, Karim; Vermeulen, Anne; Boulanger, Damien

2015-04-01

The Chemistry-Aerosol Mediterranean Experiment (ChArMEx, http://charmex.lsce.ipsl.fr/) aims at a scientific assessment of the present and future state of the atmospheric environment in the Mediterranean Basin, and of its impacts on the regional climate, air quality, and marine biogeochemistry. The project includes long term monitoring of environmental parameters , intensive field campaigns, use of satellite data and modelling studies. Therefore ChARMEx scientists produce and need to access a wide diversity of data. In this context, the objective of the database task is to organize data management, distribution system and services, such as facilitating the exchange of information and stimulating the collaboration between researchers within the ChArMEx community, and beyond. The database relies on a strong collaboration between ICARE, IPSL and OMP data centers and has been set up in the framework of the Mediterranean Integrated Studies at Regional And Locals Scales (MISTRALS) program data portal. ChArMEx data, either produced or used by the project, are documented and accessible through the database website: http://mistrals.sedoo.fr/ChArMEx. The website offers the usual but user-friendly functionalities: data catalog, user registration procedure, search tool to select and access data... The metadata (data description) are standardized, and comply with international standards (ISO 19115-19139; INSPIRE European Directive; Global Change Master Directory Thesaurus). A Digital Object Identifier (DOI) assignement procedure allows to automatically register the datasets, in order to make them easier to access, cite, reuse and verify. At present, the ChArMEx database contains about 120 datasets, including more than 80 in situ datasets (2012, 2013 and 2014 summer campaigns, background monitoring station of Ersa...), 25 model output sets (dust model intercomparison, MEDCORDEX scenarios...), a high resolution emission inventory over the Mediterranean... Many in situ datasets have been inserted in a relational database, in order to enable more accurate selection and download of different datasets in a shared format. Many dedicated satellite products (SEVIRI, TRIMM, PARASOL...) are processed and will soon be accessible through the database website. In order to meet the operational needs of the airborne and ground based observational teams during the ChArMEx campaigns, a day-to-day chart display website has been developed and operated: http://choc.sedoo.org. It offers a convenient way to browse weather conditions and chemical composition during the campaign periods. Every scientist is invited to visit the ChArMEx websites, to register and to request data. Feel free to contact charmex-database@sedoo.fr for any question.

The ChArMEx database

NASA Astrophysics Data System (ADS)

Ferré, Hélène; Descloitres, Jacques; Fleury, Laurence; Boichard, Jean-Luc; Brissebrat, Guillaume; Focsa, Loredana; Henriot, Nicolas; Mastrorillo, Laurence; Mière, Arnaud; Vermeulen, Anne

2013-04-01

The Chemistry-Aerosol Mediterranean Experiment (ChArMEx, http://charmex.lsce.ipsl.fr/) aims at a scientific assessment of the present and future state of the atmospheric environment in the Mediterranean Basin, and of its impacts on the regional climate, air quality, and marine biogeochemistry. The project includes long term monitoring of environmental parameters, intensive field campaigns, use of satellite data and modelling studies. Therefore ChARMEx scientists produce and need to access a wide diversity of data. In this context, the objective of the database task is to organize data management, distribution system and services such as facilitating the exchange of information and stimulating the collaboration between researchers within the ChArMEx community, and beyond. The database relies on a strong collaboration between OMP and ICARE data centres and falls within the scope of the Mediterranean Integrated Studies at Regional And Locals Scales (MISTRALS) program data portal. All the data produced by or of interest for the ChArMEx community will be documented in the data catalogue and accessible through the database website: http://mistrals.sedoo.fr/ChArMEx. The database website offers different tools: - A registration procedure which enables any scientist to accept the data policy and apply for a user database account. - Forms to document observations or products that will be provided to the database in compliance with metadata international standards (ISO 19115-19139; INSPIRE; Global Change Master Directory Thesaurus). - A search tool to browse the catalogue using thematic, geographic and/or temporal criteria. - Sorted lists of the datasets by thematic keywords, by measured parameters, by instruments or by platform type. - A shopping-cart web interface to order in situ data files. At present datasets from the background monitoring station of Ersa, Cape Corsica and from the 2012 ChArMEx pre-campaign are available. - A user-friendly access to satellite products (SEVIRI, TRIMM, PARASOL...) stored in the ICARE data archive using OpeNDAP protocole The website will soon propose new facilities. In particular, many in situ datasets will be homogenized and inserted in a relational database, in order to enable more accurate data selection and download of different datasets in a shared format. In order to meet the operational needs of the airborne and ground based observational teams during the ChArMEx 2012 pre-campaign and the 2013 experiment, a day-to-day quick look and report display website has been developed too: http://choc.sedoo.org. It offers a convenient way to browse weather conditions and chemical composition during the campaign periods.

Comparison of global inventories of CO2 emissions from biomass burning during 2002-2011 derived from multiple satellite products.

PubMed

Shi, Yusheng; Matsunaga, Tsuneo; Saito, Makoto; Yamaguchi, Yasushi; Chen, Xuehong

2015-11-01

This study compared five widely used globally gridded biomass burning emissions inventories for the 2002-2011 period (Global Fire Emissions Database 3 (GFED3), Global Fire Emissions Database 4 (GFED4), Global Fire Assimilation System 1.0 (GFAS1.0), Fire INventory from NCAR 1.0 (FINN1.0) and Global Inventory for Chemistry-Climate studies-GFED4 (G-G)). Average annual CO2 emissions range from 6521.3 to 9661.5 Tg year(-1) for five inventories, with extensive amounts in Africa, South America and Southeast Asia. Coefficient of Variation for Southern America, Northern and Southern Africa are 30%, 39% and 48%. Globally, the majority of CO2 emissions are released from savanna burnings, followed by forest and cropland burnings. The largest differences among the five inventories are mainly attributable to the overestimation of CO2 emissions by FINN1.0 in Southeast Asia savanna and cropland burning, and underestimation in Southern Africa savanna and Amazon forest burning. The overestimation in Africa by G-G also contributes to the differences. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Estimating historical anthropogenic global sulfur emission patterns for the period 1850-1990

NASA Astrophysics Data System (ADS)

Lefohn, Allen S.; Husar, Janja D.; Husar, Rudolf B.

It is important to establish a reliable regional emission inventory of sulfur as a function of time when assessing the possible effects of global change and acid rain. This study developed a database of annual estimates of national sulfur emissions from 1850 to 1990. A common methodology was applied across all years and countries allowing for global totals to be produced by adding estimates from all countries. The consistent approach facilitates the modification of the database and the observation of changes at national, regional, or global levels. The emission estimates were based on net production (i.e., production plus imports minus exports), sulfur content, and sulfur retention for each country's production activities. Because the emission estimates were based on the above considerations, our database offers an opportunity to independently compare our results with those estimates based on individual country estimates. Fine temporal resolution clearly shows emission changes associated with specific historical events (e.g., wars, depressions, etc.) on a regional, national, or global basis. The spatial pattern of emissions shows that the US, the USSR, and China were the main sulfur emitters (i.e., approximately 50% of the total) in the world in 1990. The USSR and the US appear to have stabilized their sulfur emissions over the past 20 yr, and the recent increases in global sulfur emissions are linked to the rapid increases in emissions from China. Sulfur emissions have been reduced in some cases by switching from high- to low-sulfur coals. Flue gas desulfurization (FGD) has apparently made important contributions to emission reductions in only a few countries, such as Germany.

A New Breed of Database System: Volcano Global Risk Identification and Analysis Project (VOGRIPA)

NASA Astrophysics Data System (ADS)

Crosweller, H. S.; Sparks, R. S.; Siebert, L.

2009-12-01

VOGRIPA originated as part of the Global Risk Identification Programme (GRIP) that is being co-ordinated from the Earth Institute of Columbia University under the auspices of the United Nations and World Bank. GRIP is a five-year programme aiming at improving global knowledge about risk from natural hazards and is part of the international response to the catastrophic 2004 Asian tsunami. VOGRIPA is also a formal IAVCEI project. The objectives of VOGRIPA are to create a global database of volcanic activity, hazards and vulnerability information that can be analysed to identify locations at high risk from volcanism, gaps in knowledge about hazards and risk, and will allow scientists and disaster managers at specific locations to analyse risk within a global context of systematic information. It is this added scope of risk and vulnerability as well as hazard which sets VOGRIPA apart from most previous databases. The University of Bristol is the central coordinating centre for the project, which is an international partnership including the Smithsonian Institution, the Geological Survey of Japan, the Earth Observatory of Singapore (Chris Newhall), the British Geological Survey, the University of Buffalo (SUNY) and Munich Re. The partnership is intended to grow and any individuals or institutions who are able to contribute resources to VOGRIPA objectives are welcome to participate. Work has already begun (funded principally by Munich Re) on populating a database of large magnitude explosive eruptions reaching back to the Quaternary, with extreme-value statistics being used to evaluate the magnitude-frequency relationship of such events, and also an assessment of how the quality of records affect the results. The following 4 years of funding from the European Research Council for VOGRIPA will be used to establish further international collaborations in order to develop different aspects of the database, with the data being accessible online once it is sufficiently complete and analyses have been carried out. It is anticipated that such a resource would be of use to the scientific community, civil authorities with responsibility for mitigating and managing volcanic hazards, and the public.

Validation of High Resolution IMERG Satellite Precipitation over the Global Oceans using OceanRAIN

NASA Astrophysics Data System (ADS)

Kucera, Paul; Klepp, Christian

2017-04-01

Precipitation is a key parameter of the essential climate variables in the Earth System that is a key variable in the global water cycle. Observations of precipitation over oceans is relatively sparse. Satellite observations over oceans is the only viable means of measuring the spatially distribution of precipitation. In an effort to improve global precipitation observations, the research community has developed a state of the art precipitation dataset as part of the NASA/JAXA Global Precipitation Measurement (GPM) program. The satellite gridded product that has been developed is called Integrated Multi-satelliE Retrievals for GPM (IMERG), which has a maximum spatial resolution of 0.1° x 0.1° and temporal 30 minute. Even with the advancements in retrievals, there is a need to quantify uncertainty of IMERG especially over oceans. To address this need, the OceanRAIN dataset has been used to create a comprehensive database to compare IMERG products. The OceanRAIN dataset was collected using an ODM-470 optical disdrometer that has been deployed on 12 research vessels worldwide with 6 long-term installations operating in all climatic regions, seasons and ocean basins. More than 5.5 million data samples have been collected on the OceanRAIN program. These data were matched to IMERG grids for the study period of 15 March 2014-31 January 2016. This evaluation produced over a 1000 matched pairs with precipitation observed at the surface. These matched pairs were used to evaluate the performance of IMERG for different latitudinal bands and precipitation regimes. The presentation will provide an overview of the study and summary of evaluation results.

Evaluation of High Resolution IMERG Satellite Precipitation over the Global Oceans using OceanRAIN

NASA Astrophysics Data System (ADS)

Kucera, P. A.; Klepp, C.

2017-12-01

Precipitation is a key parameter of the essential climate variables in the Earth System that is a key variable in the global water cycle. Observations of precipitation over oceans is relatively sparse. Satellite observations over oceans is the only viable means of measuring the spatially distribution of precipitation. In an effort to improve global precipitation observations, the research community has developed a state of the art precipitation dataset as part of the NASA/JAXA Global Precipitation Measurement (GPM) program. The satellite gridded product that has been developed is called Integrated Multi-satelliE Retrievals for GPM (IMERG), which has a maximum spatial resolution of 0.1º x 0.1º and temporal 30 minute. Even with the advancements in retrievals, there is a need to quantify uncertainty of IMERG precipitation estimates especially over oceans. To address this need, the OceanRAIN dataset has been used to create a comprehensive database to compare IMERG products. The OceanRAIN dataset was created using observations from the ODM-470 optical disdrometer that has been deployed on 12 research vessels worldwide with 6 long-term installations operating in all climatic regions, seasons and ocean basins. More than 6 million data samples have been collected on the OceanRAIN program. These data were matched to IMERG grids for the study period of 15 March 2014-01 April 2017. This evaluation produced over 1500 matched IMERG-OceanRAIN pairs of precipitation observed at the surface. These matched pairs were used to evaluate the performance of IMERG stratified by different latitudinal bands and precipitation regimes. The presentation will provide an overview of the study and summary of evaluation results.

Does climate directly influence NPP globally?

PubMed

Chu, Chengjin; Bartlett, Megan; Wang, Youshi; He, Fangliang; Weiner, Jacob; Chave, Jérôme; Sack, Lawren

2016-01-01

The need for rigorous analyses of climate impacts has never been more crucial. Current textbooks state that climate directly influences ecosystem annual net primary productivity (NPP), emphasizing the urgent need to monitor the impacts of climate change. A recent paper challenged this consensus, arguing, based on an analysis of NPP for 1247 woody plant communities across global climate gradients, that temperature and precipitation have negligible direct effects on NPP and only perhaps have indirect effects by constraining total stand biomass (Mtot ) and stand age (a). The authors of that study concluded that the length of the growing season (lgs ) might have a minor influence on NPP, an effect they considered not to be directly related to climate. In this article, we describe flaws that affected that study's conclusions and present novel analyses to disentangle the effects of stand variables and climate in determining NPP. We re-analyzed the same database to partition the direct and indirect effects of climate on NPP, using three approaches: maximum-likelihood model selection, independent-effects analysis, and structural equation modeling. These new analyses showed that about half of the global variation in NPP could be explained by Mtot combined with climate variables and supported strong and direct influences of climate independently of Mtot , both for NPP and for net biomass change averaged across the known lifetime of the stands (ABC = average biomass change). We show that lgs is an important climate variable, intrinsically correlated with, and contributing to mean annual temperature and precipitation (Tann and Pann ), all important climatic drivers of NPP. Our analyses provide guidance for statistical and mechanistic analyses of climate drivers of ecosystem processes for predictive modeling and provide novel evidence supporting the strong, direct role of climate in determining vegetation productivity at the global scale. © 2015 John Wiley & Sons Ltd.

WorldWideScience.org: the global science gateway.

PubMed

Fitzpatrick, Roberta Bronson

2009-10-01

WorldWideScience.org is a Web-based global gateway connecting users to both national and international scientific databases and portals. This column will provide background information on the resource as well as introduce basic searching practices for users.

Global and public health core competencies for nursing education: A systematic review of essential competencies.

PubMed

Clark, Megan; Raffray, Marie; Hendricks, Kristin; Gagnon, Anita J

2016-05-01

Nurses are learning and practicing in an increasingly global world. Both nursing schools and nursing students are seeking guidance as they integrate global health into their learning and teaching. This systematic review is intended to identify the most common global and public health core competencies found in the literature and better inform schools of nursing wishing to include global health content in their curricula. Systematic review. An online search of CINAHL and Medline databases, as well as, inclusion of pertinent gray literature was conducted for articles published before 2013. Relevant literature for global health (GH) and public and community health (PH/CH) competencies was reviewed to determine recommendations of both competencies using a combination of search terms. Studies must have addressed competencies as defined in the literature and must have been pertinent to GH or PH/CH. The databases were systematically searched and after reading the full content of the included studies, key concepts were extracted and synthesized. Twenty-five studies were identified and resulted in a list of 14 global health core competencies. These competencies are applicable to a variety of health disciplines, but particularly can inform the efforts of nursing schools to integrate global health concepts into their curricula. Copyright © 2016 Elsevier Ltd. All rights reserved.

SPECIAL TOPIC: ITER L mode confinement database

NASA Astrophysics Data System (ADS)

Kaye, S. M.; Greenwald, M.; Stroth, U.; Kardaun, O.; Kus, A.; Schissel, D.; DeBoo, J.; Bracco, G.; Thomsen, K.; Cordey, J. G.; Miura, Y.; Matsuda, T.; Tamai, H.; Takizuda, T.; Hirayama, T.; Kikuchi, H.; Naito, O.; Chudnovskij, A.; Ongena, J.; Hoang, G.

1997-09-01

This special topic describes the contents of an L mode database that has been compiled with data from Alcator C-Mod, ASDEX, DIII, DIII-D, FTU, JET, JFT-2M, JT-60, PBX-M, PDX, T-10, TEXTOR, TFTR and Tore Supra. The database consists of a total of 2938 entries, 1881 of which are in the L phase while 922 are ohmically heated only (ohmic). Each entry contains up to 95 descriptive parameters, including global and kinetic information, machine conditioning and configuration. The special topic presents a description of the database and the variables contained therein, and it also presents global and thermal scalings along with predictions for ITER. The L mode thermal confinement time scaling, determined from a subset of 1312 entries for which the τE,th are provided, is τE,th = 0.023Ip0.96BT0.03R1.83(R/a)0.06 κ0.64ne0.40Meff0.20P-0.73 in units of seconds, megamps, teslas, metres, -, -, 10-9 m-1

sPlot - the new global vegetation-plot database for addressing trait-environment relationships across the world's biomes

NASA Astrophysics Data System (ADS)

Purschke, Oliver; Dengler, Jürgen; Bruelheide, Helge; Chytrý, Milan; Jansen, Florian; Hennekens, Stephan; Jandt, Ute; Jiménez-Alfaro, Borja; Kattge, Jens; De Patta Pillar, Valério; Sandel, Brody; Winter, Marten

2015-04-01

The trait composition of plant communities is determined by abiotic, biotic and historical factors, but the importance of macro-climatic factors in explaining trait-environment relationships at the local scale remains unclear. Such knowledge is crucial for biogeographical and ecological theory but also relevant to devise management measures to mitigate the negative effects of climate change. To address these questions, an iDiv Working Group has established the first global vegetation-plot database (sPlot). sPlot currently contains ~700,000 plots from over 50 countries and all biomes, and is steadily growing. Approx. 70% of the most frequent species are represented by at least one trait in the global trait database TRY and gap-filled data will become available for the most common traits. We will give an overview about the structure and present content of sPlot in terms of spatial distribution, data properties and trait coverage. We will explain next steps and perspectives, present first cross-biome analyses of community-weighted mean traits and trait variability, and highlight some ecological questions that can be addressed with sPlot.

Fast human pose estimation using 3D Zernike descriptors

NASA Astrophysics Data System (ADS)

Berjón, Daniel; Morán, Francisco

2012-03-01

Markerless video-based human pose estimation algorithms face a high-dimensional problem that is frequently broken down into several lower-dimensional ones by estimating the pose of each limb separately. However, in order to do so they need to reliably locate the torso, for which they typically rely on time coherence and tracking algorithms. Their losing track usually results in catastrophic failure of the process, requiring human intervention and thus precluding their usage in real-time applications. We propose a very fast rough pose estimation scheme based on global shape descriptors built on 3D Zernike moments. Using an articulated model that we configure in many poses, a large database of descriptor/pose pairs can be computed off-line. Thus, the only steps that must be done on-line are the extraction of the descriptors for each input volume and a search against the database to get the most likely poses. While the result of such process is not a fine pose estimation, it can be useful to help more sophisticated algorithms to regain track or make more educated guesses when creating new particles in particle-filter-based tracking schemes. We have achieved a performance of about ten fps on a single computer using a database of about one million entries.

Agrigenomics for Microalgal Biofuel Production: An Overview of Various Bioinformatics Resources and Recent Studies to Link OMICS to Bioenergy and Bioeconomy

PubMed Central

Misra, Namrata; Parida, Bikram Kumar

2013-01-01

Abstract Microalgal biofuels offer great promise in contributing to the growing global demand for alternative sources of renewable energy. However, to make algae-based fuels cost competitive with petroleum, lipid production capabilities of microalgae need to improve substantially. Recent progress in algal genomics, in conjunction with other “omic” approaches, has accelerated the ability to identify metabolic pathways and genes that are potential targets in the development of genetically engineered microalgal strains with optimum lipid content. In this review, we summarize the current bioeconomic status of global biofuel feedstocks with particular reference to the role of “omics” in optimizing sustainable biofuel production. We also provide an overview of the various databases and bioinformatics resources available to gain a more complete understanding of lipid metabolism across algal species, along with the recent contributions of “omic” approaches in the metabolic pathway studies for microalgal biofuel production. PMID:24044362

Online Metadata Directories: A way of preserving, sharing and discovering scientific information

NASA Technical Reports Server (NTRS)

Meaux, M.

2005-01-01

The Global Change Master Directory (GCMD) assists the scientific community in the discovery of and linkage to Earth Science data and provides data holders a means to advertise their data to the community through its portals, i.e. online customized subset metadata directories. These directories are effectively serving communities like the Joint Committee on Antarctic Data Management (JCADM), the Global Observing System Information Center (GOSIC), and the Global Ocean Ecosystems Dynamic Program (GLOBEC) by increasing the visibility of their data holding. The purpose of the Gulf of Maine Ocean Data Partnership (GoMODP) is to "promote and coordinate the sharing, linking, electronic dissemination, and use of data on the Gulf of Maine region". The participants have decided that a "coordinated effort is needed to enable users throughout the Gulf of Maine region and beyond to discover and put to use the vast and growing quantities of data in their respective databases". GoMODP members have invited the GCMD to discuss potential collaborations associated with this effort. The presentation will focus on the use of the GCMD s metadata directory as a powerful tool for data discovery and sharing. An overview of the directory and its metadata authoring tools will be given.

Tree cover in Central Africa: determinants and sensitivity under contrasted scenarios of global change.

PubMed

Aleman, Julie C; Blarquez, Olivier; Gourlet-Fleury, Sylvie; Bremond, Laurent; Favier, Charly

2017-01-30

Tree cover is a key variable for ecosystem functioning, and is widely used to study tropical ecosystems. But its determinants and their relative importance are still a matter of debate, especially because most regional and global analyses have not considered the influence of agricultural practices. More information is urgently needed regarding how human practices influence vegetation structure. Here we focused in Central Africa, a region still subjected to traditional agricultural practices with a clear vegetation gradient. Using remote sensing data and global databases, we calibrated a Random Forest model to correlatively link tree cover with climatic, edaphic, fire and agricultural practices data. We showed that annual rainfall and accumulated water deficit were the main drivers of the distribution of tree cover and vegetation classes (defined by the modes of tree cover density), but agricultural practices, especially pastoralism, were also important in determining tree cover. We simulated future tree cover with our model using different scenarios of climate and land-use (agriculture and population) changes. Our simulations suggest that tree cover may respond differently regarding the type of scenarios, but land-use change was an important driver of vegetation change even able to counterbalance the effect of climate change in Central Africa.

Tree cover in Central Africa: determinants and sensitivity under contrasted scenarios of global change

NASA Astrophysics Data System (ADS)

Aleman, Julie C.; Blarquez, Olivier; Gourlet-Fleury, Sylvie; Bremond, Laurent; Favier, Charly

2017-01-01

Tree cover is a key variable for ecosystem functioning, and is widely used to study tropical ecosystems. But its determinants and their relative importance are still a matter of debate, especially because most regional and global analyses have not considered the influence of agricultural practices. More information is urgently needed regarding how human practices influence vegetation structure. Here we focused in Central Africa, a region still subjected to traditional agricultural practices with a clear vegetation gradient. Using remote sensing data and global databases, we calibrated a Random Forest model to correlatively link tree cover with climatic, edaphic, fire and agricultural practices data. We showed that annual rainfall and accumulated water deficit were the main drivers of the distribution of tree cover and vegetation classes (defined by the modes of tree cover density), but agricultural practices, especially pastoralism, were also important in determining tree cover. We simulated future tree cover with our model using different scenarios of climate and land-use (agriculture and population) changes. Our simulations suggest that tree cover may respond differently regarding the type of scenarios, but land-use change was an important driver of vegetation change even able to counterbalance the effect of climate change in Central Africa.

The GMOS cyber(e)-infrastructure: advanced services for supporting science and policy.

PubMed

Cinnirella, S; D'Amore, F; Bencardino, M; Sprovieri, F; Pirrone, N

2014-03-01

The need for coordinated, systematized and catalogued databases on mercury in the environment is of paramount importance as improved information can help the assessment of the effectiveness of measures established to phase out and ban mercury. Long-term monitoring sites have been established in a number of regions and countries for the measurement of mercury in ambient air and wet deposition. Long term measurements of mercury concentration in biota also produced a huge amount of information, but such initiatives are far from being within a global, systematic and interoperable approach. To address these weaknesses the on-going Global Mercury Observation System (GMOS) project ( www.gmos.eu ) established a coordinated global observation system for mercury as well it retrieved historical data ( www.gmos.eu/sdi ). To manage such large amount of information a technological infrastructure was planned. This high-performance back-end resource associated with sophisticated client applications enables data storage, computing services, telecommunications networks and all services necessary to support the activity. This paper reports the architecture definition of the GMOS Cyber(e)-Infrastructure and the services developed to support science and policy, including the United Nation Environmental Program. It finally describes new possibilities in data analysis and data management through client applications.

Top-down constraints on disturbance dynamics in the terrestrial carbon cycle: effects at global and regional scales

NASA Astrophysics Data System (ADS)

Bloom, A. A.; Exbrayat, J. F.; van der Velde, I.; Peters, W.; Williams, M.

2014-12-01

Large uncertainties preside over terrestrial carbon flux estimates on a global scale. In particular, the strongly coupled dynamics between net ecosystem productivity and disturbance C losses are poorly constrained. To gain an improved understanding of ecosystem C dynamics from regional to global scale, we apply a Markov Chain Monte Carlo based model-data-fusion approach into the CArbon DAta-MOdel fraMework (CARDAMOM). We assimilate MODIS LAI and burned area, plant-trait data, and use the Harmonized World Soil Database (HWSD) and maps of above ground biomass as prior knowledge for initial conditions. We optimize model parameters based on (a) globally spanning observations and (b) ecological and dynamic constraints that force single parameter values and parameter inter-dependencies to be representative of real world processes. We determine the spatial and temporal dynamics of major terrestrial C fluxes and model parameter values on a global scale (GPP = 123 +/- 8 Pg C yr-1 & NEE = -1.8 +/- 2.7 Pg C yr-1). We further show that the incorporation of disturbance fluxes, and accounting for their instantaneous or delayed effect, is of critical importance in constraining global C cycle dynamics, particularly in the tropics. In a higher resolution case study centred on the Amazon Basin we show how fires not only trigger large instantaneous emissions of burned matter, but also how they are responsible for a sustained reduction of up to 50% in plant uptake following the depletion of biomass stocks. The combination of these two fire-induced effects leads to a 1 g C m-2 d-1reduction in the strength of the net terrestrial carbon sink. Through our simulations at regional and global scale, we advocate the need to assimilate disturbance metrics in global terrestrial carbon cycle models to bridge the gap between globally spanning terrestrial carbon cycle data and the full dynamics of the ecosystem C cycle. Disturbances are especially important because their quick occurrence may have long-term effects on ecosystems. Our synthetic simulations show that while tropical ecosystems uptake may reach pre-disturbance level after a decade, biomass stocks would most likely need more than a century to recover from a single extreme disturbance event.

The Neotoma Paleoecology Database

NASA Astrophysics Data System (ADS)

Grimm, E. C.; Ashworth, A. C.; Barnosky, A. D.; Betancourt, J. L.; Bills, B.; Booth, R.; Blois, J.; Charles, D. F.; Graham, R. W.; Goring, S. J.; Hausmann, S.; Smith, A. J.; Williams, J. W.; Buckland, P.

2015-12-01

The Neotoma Paleoecology Database (www.neotomadb.org) is a multiproxy, open-access, relational database that includes fossil data for the past 5 million years (the late Neogene and Quaternary Periods). Modern distributional data for various organisms are also being made available for calibration and paleoecological analyses. The project is a collaborative effort among individuals from more than 20 institutions worldwide, including domain scientists representing a spectrum of Pliocene-Quaternary fossil data types, as well as experts in information technology. Working groups are active for diatoms, insects, ostracodes, pollen and plant macroscopic remains, testate amoebae, rodent middens, vertebrates, age models, geochemistry and taphonomy. Groups are also active in developing online tools for data analyses and for developing modules for teaching at different levels. A key design concept of NeotomaDB is that stewards for various data types are able to remotely upload and manage data. Cooperatives for different kinds of paleo data, or from different regions, can appoint their own stewards. Over the past year, much progress has been made on development of the steward software-interface that will enable this capability. The steward interface uses web services that provide access to the database. More generally, these web services enable remote programmatic access to the database, which both desktop and web applications can use and which provide real-time access to the most current data. Use of these services can alleviate the need to download the entire database, which can be out-of-date as soon as new data are entered. In general, the Neotoma web services deliver data either from an entire table or from the results of a view. Upon request, new web services can be quickly generated. Future developments will likely expand the spatial and temporal dimensions of the database. NeotomaDB is open to receiving new datasets and stewards from the global Quaternary community. Research is supported by NSF EAR-0622349.

CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data.

PubMed

Hallin, Peter F; Ussery, David W

2004-12-12

Currently, new bacterial genomes are being published on a monthly basis. With the growing amount of genome sequence data, there is a demand for a flexible and easy-to-maintain structure for storing sequence data and results from bioinformatic analysis. More than 150 sequenced bacterial genomes are now available, and comparisons of properties for taxonomically similar organisms are not readily available to many biologists. In addition to the most basic information, such as AT content, chromosome length, tRNA count and rRNA count, a large number of more complex calculations are needed to perform detailed comparative genomics. DNA structural calculations like curvature and stacking energy, DNA compositions like base skews, oligo skews and repeats at the local and global level are just a few of the analysis that are presented on the CBS Genome Atlas Web page. Complex analysis, changing methods and frequent addition of new models are factors that require a dynamic database layout. Using basic tools like the GNU Make system, csh, Perl and MySQL, we have created a flexible database environment for storing and maintaining such results for a collection of complete microbial genomes. Currently, these results counts to more than 220 pieces of information. The backbone of this solution consists of a program package written in Perl, which enables administrators to synchronize and update the database content. The MySQL database has been connected to the CBS web-server via PHP4, to present a dynamic web content for users outside the center. This solution is tightly fitted to existing server infrastructure and the solutions proposed here can perhaps serve as a template for other research groups to solve database issues. A web based user interface which is dynamically linked to the Genome Atlas Database can be accessed via www.cbs.dtu.dk/services/GenomeAtlas/. This paper has a supplemental information page which links to the examples presented: www.cbs.dtu.dk/services/GenomeAtlas/suppl/bioinfdatabase.

Urban Neighborhood Information Systems: Crime Prevention and Control Applications.

ERIC Educational Resources Information Center

Pattavina, April; Pierce, Glenn; Saiz, Alan

2002-01-01

Chronicles the need for and development of an interdisciplinary, integrated neighborhood-level database for Boston, Massachusetts, discussing database content and potential applications of this database to a range of criminal justice problems and initiatives (e.g., neighborhood crime patterns, needs assessment, and program planning and…

Utilisation of a thoracic oncology database to capture radiological and pathological images for evaluation of response to chemotherapy in patients with malignant pleural mesothelioma

PubMed Central

Carey, George B; Kazantsev, Stephanie; Surati, Mosmi; Rolle, Cleo E; Kanteti, Archana; Sadiq, Ahad; Bahroos, Neil; Raumann, Brigitte; Madduri, Ravi; Dave, Paul; Starkey, Adam; Hensing, Thomas; Husain, Aliya N; Vokes, Everett E; Vigneswaran, Wickii; Armato, Samuel G; Kindler, Hedy L; Salgia, Ravi

2012-01-01

Objective An area of need in cancer informatics is the ability to store images in a comprehensive database as part of translational cancer research. To meet this need, we have implemented a novel tandem database infrastructure that facilitates image storage and utilisation. Background We had previously implemented the Thoracic Oncology Program Database Project (TOPDP) database for our translational cancer research needs. While useful for many research endeavours, it is unable to store images, hence our need to implement an imaging database which could communicate easily with the TOPDP database. Methods The Thoracic Oncology Research Program (TORP) imaging database was designed using the Research Electronic Data Capture (REDCap) platform, which was developed by Vanderbilt University. To demonstrate proof of principle and evaluate utility, we performed a retrospective investigation into tumour response for malignant pleural mesothelioma (MPM) patients treated at the University of Chicago Medical Center with either of two analogous chemotherapy regimens and consented to at least one of two UCMC IRB protocols, 9571 and 13473A. Results A cohort of 22 MPM patients was identified using clinical data in the TOPDP database. After measurements were acquired, two representative CT images and 0–35 histological images per patient were successfully stored in the TORP database, along with clinical and demographic data. Discussion We implemented the TORP imaging database to be used in conjunction with our comprehensive TOPDP database. While it requires an additional effort to use two databases, our database infrastructure facilitates more comprehensive translational research. Conclusions The investigation described herein demonstrates the successful implementation of this novel tandem imaging database infrastructure, as well as the potential utility of investigations enabled by it. The data model presented here can be utilised as the basis for further development of other larger, more streamlined databases in the future. PMID:23103606

Intelligent robot control using an adaptive critic with a task control center and dynamic database

NASA Astrophysics Data System (ADS)

Hall, E. L.; Ghaffari, M.; Liao, X.; Alhaj Ali, S. M.

2006-10-01

The purpose of this paper is to describe the design, development and simulation of a real time controller for an intelligent, vision guided robot. The use of a creative controller that can select its own tasks is demonstrated. This creative controller uses a task control center and dynamic database. The dynamic database stores both global environmental information and local information including the kinematic and dynamic models of the intelligent robot. The kinematic model is very useful for position control and simulations. However, models of the dynamics of the manipulators are needed for tracking control of the robot's motions. Such models are also necessary for sizing the actuators, tuning the controller, and achieving superior performance. Simulations of various control designs are shown. Also, much of the model has also been used for the actual prototype Bearcat Cub mobile robot. This vision guided robot was designed for the Intelligent Ground Vehicle Contest. A novel feature of the proposed approach is that the method is applicable to both robot arm manipulators and robot bases such as wheeled mobile robots. This generality should encourage the development of more mobile robots with manipulator capability since both models can be easily stored in the dynamic database. The multi task controller also permits wide applications. The use of manipulators and mobile bases with a high-level control are potentially useful for space exploration, certain rescue robots, defense robots, and medical robotics aids.

InChI in the wild: an assessment of InChIKey searching in Google

PubMed Central

2013-01-01

While chemical databases can be queried using the InChI string and InChIKey (IK) the latter was designed for open-web searching. It is becoming increasingly effective for this since more sources enhance crawling of their websites by the Googlebot and consequent IK indexing. Searchers who use Google as an adjunct to database access may be less familiar with the advantages of using the IK as explored in this review. As an example, the IK for atorvastatin retrieves ~200 low-redundancy links from a Google search in 0.3 of a second. These include most major databases and a very low false-positive rate. Results encompass less familiar but potentially useful sources and can be extended to isomer capture by using just the skeleton layer of the IK. Google Advanced Search can be used to filter large result sets. Image searching with the IK is also effective and complementary to open-web queries. Results can be particularly useful for less-common structures as exemplified by a major metabolite of atorvastatin giving only three hits. Testing also demonstrated document-to-document and document-to-database joins via structure matching. The necessary generation of an IK from chemical names can be accomplished using open tools and resources for patents, papers, abstracts or other text sources. Active global sharing of local IK-linked information can be accomplished via surfacing in open laboratory notebooks, blogs, Twitter, figshare and other routes. While information-rich chemistry (e.g. approved drugs) can exhibit swamping and redundancy effects, the much smaller IK result sets for link-poor structures become a transformative first-pass option. The IK indexing has therefore turned Google into a de-facto open global chemical information hub by merging links to most significant sources, including over 50 million PubChem and ChemSpider records. The simplicity, specificity and speed of matching make it a useful option for biologists or others less familiar with chemical searching. However, compared to rigorously maintained major databases, users need to be circumspect about the consistency of Google results and provenance of retrieved links. In addition, community engagement may be necessary to ameliorate possible future degradation of utility. PMID:23399051

Global Epidemiology of Non-Alcoholic Fatty Liver Disease and Perspectives on US Minority Populations

PubMed Central

Sherif, Zaki A.; Saeed, Armana; Ghavimi, Shima; Nouraie, Seyed-Mehdi; Laiyemo, Adeyinka O.; Brim, Hassan; Ashktorab, Hassan

2016-01-01

Non-alcoholic fatty liver disease (NAFLD), a clinical syndrome that is predicted to affect millions of people worldwide, will become the next global epidemic. The natural course of this disease, including its subtype, non-alcoholic steatohepatitis (NASH), is not clearly defined, especially in the US minority populations. The aim of this review is to report the global epidemiology of NAFLD, with emphasis on US minority populations on the basis of database searches using using Pubmed and other online databases. The US Hispanic population is the most disproportionately affected ethnic group with hepatic steatosis whereas African-Americans are the least affected. Genetic disparities involved in lipid metabolism seem to be the leading explanation for the lowest incidence and prevalence of both NAFLD and NASH in African-Americans. PMID:27038448

Catalog of databases and reports

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burtis, M.D.

1997-04-01

This catalog provides information about the many reports and materials made available by the US Department of Energy`s (DOE`s) Global Change Research Program (GCRP) and the Carbon Dioxide Information Analysis Center (CDIAC). The catalog is divided into nine sections plus the author and title indexes: Section A--US Department of Energy Global Change Research Program Research Plans and Summaries; Section B--US Department of Energy Global Change Research Program Technical Reports; Section C--US Department of Energy Atmospheric Radiation Measurement (ARM) Program Reports; Section D--Other US Department of Energy Reports; Section E--CDIAC Reports; Section F--CDIAC Numeric Data and Computer Model Distribution; Section G--Othermore » Databases Distributed by CDIAC; Section H--US Department of Agriculture Reports on Response of Vegetation to Carbon Dioxide; and Section I--Other Publications.« less

Effective Materials Property Information Management for the 21st Century

NASA Technical Reports Server (NTRS)

Ren, Weiju; Cebon, David; Arnold, Steve

2009-01-01

This paper discusses key principles for the development of materials property information management software systems. There are growing needs for automated materials information management in various organizations. In part these are fueled by the demands for higher efficiency in material testing, product design and engineering analysis. But equally important, organizations are being driven by the need for consistency, quality and traceability of data, as well as control of access to sensitive information such as proprietary data. Further, the use of increasingly sophisticated nonlinear, anisotropic and multi-scale engineering analyses requires both processing of large volumes of test data for development of constitutive models and complex materials data input for Computer-Aided Engineering (CAE) software. And finally, the globalization of economy often generates great needs for sharing a single "gold source" of materials information between members of global engineering teams in extended supply chains. Fortunately, material property management systems have kept pace with the growing user demands and evolved to versatile data management systems that can be customized to specific user needs. The more sophisticated of these provide facilities for: (i) data management functions such as access, version, and quality controls; (ii) a wide range of data import, export and analysis capabilities; (iii) data "pedigree" traceability mechanisms; (iv) data searching, reporting and viewing tools; and (v) access to the information via a wide range of interfaces. In this paper the important requirements for advanced material data management systems, future challenges and opportunities such as automated error checking, data quality characterization, identification of gaps in datasets, as well as functionalities and business models to fuel database growth and maintenance are discussed.

The ChArMEx database

NASA Astrophysics Data System (ADS)

Ferré, Helene; Belmahfoud, Nizar; Boichard, Jean-Luc; Brissebrat, Guillaume; Descloitres, Jacques; Fleury, Laurence; Focsa, Loredana; Henriot, Nicolas; Mastrorillo, Laurence; Mière, Arnaud; Vermeulen, Anne

2014-05-01

The Chemistry-Aerosol Mediterranean Experiment (ChArMEx, http://charmex.lsce.ipsl.fr/) aims at a scientific assessment of the present and future state of the atmospheric environment in the Mediterranean Basin, and of its impacts on the regional climate, air quality, and marine biogeochemistry. The project includes long term monitoring of environmental parameters, intensive field campaigns, use of satellite data and modelling studies. Therefore ChARMEx scientists produce and need to access a wide diversity of data. In this context, the objective of the database task is to organize data management, distribution system and services, such as facilitating the exchange of information and stimulating the collaboration between researchers within the ChArMEx community, and beyond. The database relies on a strong collaboration between OMP and ICARE data centres and has been set up in the framework of the Mediterranean Integrated Studies at Regional And Locals Scales (MISTRALS) program data portal. All the data produced by or of interest for the ChArMEx community will be documented in the data catalogue and accessible through the database website: http://mistrals.sedoo.fr/ChArMEx. At present, the ChArMEx database contains about 75 datasets, including 50 in situ datasets (2012 and 2013 campaigns, Ersa background monitoring station), 25 model outputs (dust model intercomparison, MEDCORDEX scenarios), and a high resolution emission inventory over the Mediterranean. Many in situ datasets have been inserted in a relational database, in order to enable more accurate data selection and download of different datasets in a shared format. The database website offers different tools: - A registration procedure which enables any scientist to accept the data policy and apply for a user database account. - A data catalogue that complies with metadata international standards (ISO 19115-19139; INSPIRE European Directive; Global Change Master Directory Thesaurus). - Metadata forms to document observations or products that will be provided to the database. - A search tool to browse the catalogue using thematic, geographic and/or temporal criteria. - A shopping-cart web interface to order in situ data files. - A web interface to select and access to homogenized datasets. Interoperability between the two data centres is being set up using the OPEnDAP protocol. The data portal will soon propose a user-friendly access to satellite products managed by the ICARE data centre (SEVIRI, TRIMM, PARASOL...). In order to meet the operational needs of the airborne and ground based observational teams during the ChArMEx 2012 and 2013 campaigns, a day-to-day chart and report display website has been developed too: http://choc.sedoo.org. It offers a convenient way to browse weather conditions and chemical composition during the campaign periods.

A global study of the unmet need for glycemic control and predictor factors among patients with type 2 diabetes mellitus who have achieved optimal fasting plasma glucose control on basal insulin.

PubMed

Raccah, Denis; Chou, Engels; Colagiuri, Stephen; Gaàl, Zsolt; Lavalle, Fernando; Mkrtumyan, Ashot; Nikonova, Elena; Tentolouris, Nikolaos; Vidal, Josep; Davies, Melanie

2017-03-01

This study used data from different sources to identify the extent of the unmet need for postprandial glycemic control in patients with type 2 diabetes mellitus (T2DM) after the initiation of basal insulin therapy in Europe, Asia Pacific, the United States, and Latin America. Different levels of evidence were used as available for each country/region, with data extracted from seven randomized controlled trials (RCTs), three clinical trial registries (CTRs), and three electronic medical record (EMR) databases. Glycemic status was categorized as "well controlled" (glycated hemoglobin [HbA 1c ] at target [<7%]), "residual hyperglycemia" (fasting plasma glucose [FPG] but not HbA 1c at target [FPG <7.2/7.8 mmol/L, <130/140 mg/dL, depending on country-specific recommendations]), or "uncontrolled" (both FPG and HbA 1c above target). Predictor factors were identified from the RCT data set using logistic regression analysis. RCT data showed that 16.9% to 28.0%, 42.7% to 54.4%, and 16.9% to 38.1% of patients with T2DM had well-controlled glycemia, residual hyperglycemia, and uncontrolled hyperglycemia, respectively. In CTRs, respective ranges were 21.8% to 33.6%, 31.5% to 35.6%, and 30.7% to 46.8%, and in EMR databases were 4.4% to 21.0%, 23.9% to 31.8%, and 53.6% to 63.8%. Significant predictor factors of residual hyperglycemia identified from RCT data included high baseline HbA 1c (all countries/regions except Brazil), high baseline FPG (United Kingdom/Japan), longer duration of diabetes (Brazil), and female sex (Europe/Latin America). Irrespective of intrinsic differences between data sources, 24% to 54% of patients with T2DM globally had residual hyperglycemia with HbA 1c not at target, despite achieving FPG control, indicating a significant unmet need for postprandial glycemic control. © 2016 The Authors. Diabetes/Metabolism Research and Reviews published by John Wiley & Sons Ltd.

Geospatial Database for Strata Objects Based on Land Administration Domain Model (ladm)

NASA Astrophysics Data System (ADS)

Nasorudin, N. N.; Hassan, M. I.; Zulkifli, N. A.; Rahman, A. Abdul

2016-09-01

Recently in our country, the construction of buildings become more complex and it seems that strata objects database becomes more important in registering the real world as people now own and use multilevel of spaces. Furthermore, strata title was increasingly important and need to be well-managed. LADM is a standard model for land administration and it allows integrated 2D and 3D representation of spatial units. LADM also known as ISO 19152. The aim of this paper is to develop a strata objects database using LADM. This paper discusses the current 2D geospatial database and needs for 3D geospatial database in future. This paper also attempts to develop a strata objects database using a standard data model (LADM) and to analyze the developed strata objects database using LADM data model. The current cadastre system in Malaysia includes the strata title is discussed in this paper. The problems in the 2D geospatial database were listed and the needs for 3D geospatial database in future also is discussed. The processes to design a strata objects database are conceptual, logical and physical database design. The strata objects database will allow us to find the information on both non-spatial and spatial strata title information thus shows the location of the strata unit. This development of strata objects database may help to handle the strata title and information.

Database Searching by Managers.

ERIC Educational Resources Information Center

Arnold, Stephen E.

Managers and executives need the easy and quick access to business and management information that online databases can provide, but many have difficulty articulating their search needs to an intermediary. One possible solution would be to encourage managers and their immediate support staff members to search textual databases directly as they now…

Planetary Surface Properties, Cratering Physics, and the Volcanic History of Mars from a New Global Martian Crater Database

NASA Astrophysics Data System (ADS)

Robbins, Stuart James

Impact craters are arguably the primary exogenic planetary process contributing to the surface evolution of solid bodies in the solar system. Craters appear across the entire surface of Mars, and they are vital to understanding its crustal properties as well as surface ages and modification events. They allow inferences into the ancient climate and hydrologic history, and they add a key data point for the understanding of impact physics. Previously available databases of Mars impact craters were created from now antiquated datasets, automated algorithms with biases and inaccuracies, were limited in scope, and/or complete only to multikilometer diameters. This work presents a new global database for Mars that contains 378,540 craters statistically complete for diameters D ≳ 1 km. This detailed database includes location and size, ejecta morphology and morphometry, interior morphology and degradation state, and whether the crater is a secondary impact. This database allowed exploration of global crater type distributions, depth, and morphologies in unprecedented detail that were used to re-examine basic crater scaling laws for the planet. The inclusion of hundreds of thousands of small, approximately kilometer-sized impacts facilitated a detailed study of the properties of nearby fields of secondary craters in relation to their primary crater. It also allowed the discovery of vast distant clusters of secondary craters over 5000 km from their primary crater, Lyot. Finally, significantly smaller craters were used to age-date volcanic calderas on the planet to re-construct the timeline of the last primary eruption events from 20 of the major Martian volcanoes.

Texture-based approach to palmprint retrieval for personal identification

NASA Astrophysics Data System (ADS)

Li, Wenxin; Zhang, David; Xu, Z.; You, J.

2000-12-01

This paper presents a new approach to palmprint retrieval for personal identification. Three key issues in image retrieval are considered - feature selection, similarity measures and dynamic search for the best matching of the sample in the image database. We propose a texture-based method for palmprint feature representation. The concept of texture energy is introduced to define a palm print's global and local features, which are characterized with high convergence of inner-palm similarities and good dispersion of inter-palm discrimination. The search is carried out in a layered fashion: first global features are used to guide the fast selection of a small set of similar candidates from the database from the database and then local features are used to decide the final output within the candidate set. The experimental results demonstrate the effectiveness and accuracy of the proposed method.

Texture-based approach to palmprint retrieval for personal identification

NASA Astrophysics Data System (ADS)

Li, Wenxin; Zhang, David; Xu, Z.; You, J.

2001-01-01

This paper presents a new approach to palmprint retrieval for personal identification. Three key issues in image retrieval are considered - feature selection, similarity measures and dynamic search for the best matching of the sample in the image database. We propose a texture-based method for palmprint feature representation. The concept of texture energy is introduced to define a palm print's global and local features, which are characterized with high convergence of inner-palm similarities and good dispersion of inter-palm discrimination. The search is carried out in a layered fashion: first global features are used to guide the fast selection of a small set of similar candidates from the database from the database and then local features are used to decide the final output within the candidate set. The experimental results demonstrate the effectiveness and accuracy of the proposed method.

Ground-based grasslands data to support remote sensing and ecosystem modeling of terrestrial primary production

NASA Technical Reports Server (NTRS)

Olson, R. J.; Scurlock, J. M. O.; Turner, R. S.; Jennings, S. V.

1995-01-01

Estimating terrestrial net primary production (NPP) using remote-sensing tools and ecosystem models requires adequate ground-based measurements for calibration, parameterization, and validation. These data needs were strongly endorsed at a recent meeting of ecosystem modelers organized by the International Geosphere-Biosphere Program's (IGBP's) Data and Information System (DIS) and its Global Analysis, Interpretation, and Modelling (GAIM) Task Force. To meet these needs, a multinational, multiagency project is being coordinated by the IGBP DIS to compile existing NPP data from field sites and to regionalize NPP point estimates to various-sized grid cells. Progress at Oak Ridge National Laboratory (ORNL) on compiling NPP data for grasslands as part of the IGBP DIS data initiative is described. Site data and associated documentation from diverse field studies are being acquired for selected grasslands and are being reviewed for completeness, consistency, and adequacy of documentation, including a description of sampling methods. Data are being compiled in a database with spatial, temporal, and thematic characteristics relevant to remote sensing and global modeling. NPP data are available from the ORNL Distributed Active Archive Center (DAAC) for biogeochemical dynamics. The ORNL DAAC is part of the Earth Observing System Data and Information System, of the US National Aeronautics and Space Administration.

A spatial national health facility database for public health sector planning in Kenya in 2008.

PubMed

Noor, Abdisalan M; Alegana, Victor A; Gething, Peter W; Snow, Robert W

2009-03-06

Efforts to tackle the enormous burden of ill-health in low-income countries are hampered by weak health information infrastructures that do not support appropriate planning and resource allocation. For health information systems to function well, a reliable inventory of health service providers is critical. The spatial referencing of service providers to allow their representation in a geographic information system is vital if the full planning potential of such data is to be realized. A disparate series of contemporary lists of health service providers were used to update a public health facility database of Kenya last compiled in 2003. These new lists were derived primarily through the national distribution of antimalarial and antiretroviral commodities since 2006. A combination of methods, including global positioning systems, was used to map service providers. These spatially-referenced data were combined with high-resolution population maps to analyze disparity in geographic access to public health care. The updated 2008 database contained 5,334 public health facilities (67% ministry of health; 28% mission and nongovernmental organizations; 2% local authorities; and 3% employers and other ministries). This represented an overall increase of 1,862 facilities compared to 2003. Most of the additional facilities belonged to the ministry of health (79%) and the majority were dispensaries (91%). 93% of the health facilities were spatially referenced, 38% using global positioning systems compared to 21% in 2003. 89% of the population was within 5 km Euclidean distance to a public health facility in 2008 compared to 71% in 2003. Over 80% of the population outside 5 km of public health service providers was in the sparsely settled pastoralist areas of the country. We have shown that, with concerted effort, a relatively complete inventory of mapped health services is possible with enormous potential for improving planning. Expansion in public health care in Kenya has resulted in significant increases in geographic access although several areas of the country need further improvements. This information is key to future planning and with this paper we have released the digital spatial database in the public domain to assist the Kenyan Government and its partners in the health sector.

Effective Materials Property Information Management for the 21st Century

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren, Weiju; Cebon, David; Arnold, Steve

2010-01-01

This paper discusses key principles for the development of materials property information management software systems. There are growing needs for automated materials information management in industry, research organizations and government agencies. In part these are fuelled by the demands for higher efficiency in material testing, product design and development and engineering analysis. But equally important, organizations are being driven to employ sophisticated methods and software tools for managing their mission-critical materials information by the needs for consistency, quality and traceability of data, as well as control of access to proprietary or sensitive information. Furthermore the use of increasingly sophisticated nonlinear,more » anisotropic and multi-scale engineering analysis approaches, particularly for composite materials, requires both processing of much larger volumes of test data for development of constitutive models and much more complex materials data input requirements for Computer-Aided Engineering (CAE) software. And finally, the globalization of engineering processes and outsourcing of design and development activities generates much greater needs for sharing a single gold source of materials information between members of global engineering teams in extended supply-chains. Fortunately material property management systems have kept pace with the growing user demands. They have evolved from hard copy archives, through simple electronic databases, to versatile data management systems that can be customized to specific user needs. The more sophisticated of these provide facilities for: (i) data management functions such as access control, version control, and quality control; (ii) a wide range of data import, export and analysis capabilities; (iii) mechanisms for ensuring that all data is traceable to its pedigree sources: details of testing programs, published sources, etc; (iv) tools for searching, reporting and viewing the data; and (v) access to the information via a wide range of interfaces, including web browsers, rich clients, programmatic access and clients embedded in third-party applications, such as CAE systems. This paper discusses the important requirements for advanced material data management systems as well as the future challenges and opportunities such as automated error checking, automated data quality assessment and characterization, identification of gaps in data, as well as functionalities and business models to keep users returning to the source: to generate user demand to fuel database growth and maintenance.« less

Give Peace a Chance: The Diminution of Peace in Global Education in the United States, United Kingdom, and Canada

ERIC Educational Resources Information Center

Cook, Sharon Anne

2008-01-01

This study surveyed the literature on peace and global education in secondary schools to explore the position of peace education within the global education field. To create a database from Canada, the United States, and Britain, this article includes secondary studies from professional and peer-reviewed periodicals, articles in published…

The Global Streamflow Indices and Metadata archive (G-SIM): A compilation of global streamflow time series indices and meta-data

NASA Astrophysics Data System (ADS)

Do, Hong; Gudmundsson, Lukas; Leonard, Michael; Westra, Seth; Senerivatne, Sonia

2017-04-01

In-situ observations of daily streamflow with global coverage are a crucial asset for understanding large-scale freshwater resources which are an essential component of the Earth system and a prerequisite for societal development. Here we present the Global Streamflow Indices and Metadata archive (G-SIM), a collection indices derived from more than 20,000 daily streamflow time series across the globe. These indices are designed to support global assessments of change in wet and dry extremes, and have been compiled from 12 free-to-access online databases (seven national databases and five international collections). The G-SIM archive also includes significant metadata to help support detailed understanding of streamflow dynamics, with the inclusion of drainage area shapefile and many essential catchment properties such as land cover type, soil and topographic characteristics. The automated procedure in data handling and quality control of the project makes G-SIM a reproducible, extendible archive and can be utilised for many purposes in large-scale hydrology. Some potential applications include the identification of observational trends in hydrological extremes, the assessment of climate change impacts on streamflow regimes, and the validation of global hydrological models.

How much donor financing for health is channelled to global versus country-specific aid functions?

PubMed

Schäferhoff, Marco; Fewer, Sara; Kraus, Jessica; Richter, Emil; Summers, Lawrence H; Sundewall, Jesper; Yamey, Gavin; Jamison, Dean T

2015-12-12

The slow global response to the Ebola crisis in west Africa suggests that important gaps exist in donor financing for key global functions, such as support for health research and development for diseases of poverty and strengthening of outbreak preparedness. In this Health Policy, we use the International Development Statistics databases to quantify donor support for such functions. We classify donor funding for health into aid for global functions (provision of global public goods, management of cross-border externalities, and fostering of leadership and stewardship) versus country-specific aid. We use a new measure of donor funding that combines official development assistance (ODA) for health with additional donor spending on research and development (R&D) for diseases of poverty. Much R&D spending falls outside ODA--ie, the assistance that is conventionally reported through ODA databases of the Organisation for Economic Co-operation and Development. This expanded definition, which we term health ODA plus, provides a more comprehensive picture of donor support for health that could reshape how policy makers will approach their support for global health. Copyright © 2015 Elsevier Ltd. All rights reserved.

Development of an Independent Global Land Cover Validation Dataset

NASA Astrophysics Data System (ADS)

Sulla-Menashe, D. J.; Olofsson, P.; Woodcock, C. E.; Holden, C.; Metcalfe, M.; Friedl, M. A.; Stehman, S. V.; Herold, M.; Giri, C.

2012-12-01

Accurate information related to the global distribution and dynamics in global land cover is critical for a large number of global change science questions. A growing number of land cover products have been produced at regional to global scales, but the uncertainty in these products and the relative strengths and weaknesses among available products are poorly characterized. To address this limitation we are compiling a database of high spatial resolution imagery to support international land cover validation studies. Validation sites were selected based on a probability sample, and may therefore be used to estimate statistically defensible accuracy statistics and associated standard errors. Validation site locations were identified using a stratified random design based on 21 strata derived from an intersection of Koppen climate classes and a population density layer. In this way, the two major sources of global variation in land cover (climate and human activity) are explicitly included in the stratification scheme. At each site we are acquiring high spatial resolution (< 1-m) satellite imagery for 5-km x 5-km blocks. The response design uses an object-oriented hierarchical legend that is compatible with the UN FAO Land Cover Classification System. Using this response design, we are classifying each site using a semi-automated algorithm that blends image segmentation with a supervised RandomForest classification algorithm. In the long run, the validation site database is designed to support international efforts to validate land cover products. To illustrate, we use the site database to validate the MODIS Collection 4 Land Cover product, providing a prototype for validating the VIIRS Surface Type Intermediate Product scheduled to start operational production early in 2013. As part of our analysis we evaluate sources of error in coarse resolution products including semantic issues related to the class definitions, mixed pixels, and poor spectral separation between classes.

Glacier Land Ice Measurements from Space (GLIMS) and the GLIMS Information Management System at NSIDC

NASA Astrophysics Data System (ADS)

Machado, A. E.; Scharfen, G. R.; Barry, R. G.; Khalsa, S. S.; Raup, B.; Swick, R.; Troisi, V. J.; Wang, I.

2001-12-01

GLIMS (Global Land Ice Measurements from Space) is an international project to survey a majority of the world's glaciers with the accuracy and precision needed to assess recent changes and determine trends in glacial environments. This will be accomplished by: comprehensive periodic satellite measurements, coordinated distribution of screened image data, analysis of images at worldwide Regional Centers, validation of analyses, and a publicly accessible database. The primary data source will be from the ASTER (Advanced Spaceborne Thermal Emission and reflection Radiometer) instrument aboard the EOS Terra spacecraft, and Landsat ETM+ (Enhanced Thematic Mapper Plus), currently in operation. Approximately 700 ASTER images have been acquired with GLIMS gain settings as of mid-2001. GLIMS is a collaborative effort with the United States Geological Survey (USGS), the National Aeronautics Space Adminstration (NASA), other U.S. Federal Agencies and a group of internationally distributed glaciologists at Regional Centers of expertise. The National Snow and Ice Data Center (NSIDC) is developing the information management system for GLIMS. We will ingest and maintain GLIMS-analyzed glacier data from Regional Centers and provide access to the data via the World Wide Web. The GLIMS database will include measurements (over time) of glacier length, area, boundaries, topography, surface velocity vectors, and snowline elevation, derived primarily from remote sensing data. The GLIMS information management system at NSIDC will provide an easy to use and widely accessible service for the glaciological community and other users needing information about the world's glaciers. The structure of the international GLIMS consortium, status of database development, sample imagery and derived analyses and user search and order interfaces will be demonstrated. More information on GLIMS is available at: http://www.glims.org/.

JADDS - towards a tailored global atmospheric composition data service for CAMS forecasts and reanalysis

NASA Astrophysics Data System (ADS)

Stein, Olaf; Schultz, Martin G.; Rambadt, Michael; Saini, Rajveer; Hoffmann, Lars; Mallmann, Daniel

2017-04-01

Global model data of atmospheric composition produced by the Copernicus Atmospheric Monitoring Service (CAMS) is collected since 2010 at FZ Jülich and serves as boundary condition for use by Regional Air Quality (RAQ) modellers world-wide. RAQ models need time-resolved meteorological as well as chemical lateral boundary conditions for their individual model domains. While the meteorological data usually come from well-established global forecast systems, the chemical boundary conditions are not always well defined. In the past, many models used 'climatic' boundary conditions for the tracer concentrations, which can lead to significant concentration biases, particularly for tracers with longer lifetimes which can be transported over long distances (e.g. over the whole northern hemisphere) with the mean wind. The Copernicus approach utilizes extensive near-realtime data assimilation of atmospheric composition data observed from space which gives additional reliability to the global modelling data and is well received by the RAQ communities. An existing Web Coverage Service (WCS) for sharing these individually tailored model results is currently being re-engineered to make use of a modern, scalable database technology in order to improve performance, enhance flexibility, and allow the operation of catalogue services. The new Jülich Atmospheric Data Distributions Server (JADDS) adheres to the Web Coverage Service WCS2.0 standard as defined by the Open Geospatial Consortium OGC. This enables the user groups to flexibly define datasets they need by selecting a subset of chemical species or restricting geographical boundaries or the length of the time series. The data is made available in the form of different catalogues stored locally on our server. In addition, the Jülich OWS Interface (JOIN) provides interoperable web services allowing for easy download and visualization of datasets delivered from WCS servers via the internet. We will present the prototype JADDS server and address the major issues identified when relocating large four-dimensional datasets into a RASDAMAN raster array database. So far the RASDAMAN support for data available in netCDF format is limited with respect to metadata related to variables and axes. For community-wide accepted solutions, selected data coverages shall result in downloadable netCDF files including metadata complying with the netCDF CF Metadata Conventions standard (http://cfconventions.org/). This can be achieved by adding custom metadata elements for RASDAMAN bands (model levels) on data ingestion. Furthermore, an optimization strategy for ingestion of several TB of 4D model output data will be outlined.

Traumatic Spinal Injury: Global Epidemiology and Worldwide Volume.

PubMed

Kumar, Ramesh; Lim, Jaims; Mekary, Rania A; Rattani, Abbas; Dewan, Michael C; Sharif, Salman Y; Osorio-Fonseca, Enrique; Park, Kee B

2018-05-01

Traumatic spinal injury (TSI) results from injury to bony, ligamentous, and/or neurologic structures of the spinal column and can cause significant morbidity and mortality. The global burden of TSI is poorly understood, so we performed a systematic review and meta-analysis to estimate the global volume of TSI. We performed a systematic review through PubMed, Embase, and Cochrane Databases on TSI studies reported from 2000 to 2016. Collected data were used to perform a meta-analysis to estimate the annual incidence of TSI across World Health Organization regions and World Bank income groups using random-effect models. Incorporating global population figures, the annual worldwide volume of TSI was estimated. A total of 102 studies were included in the systematic review and 19 studies in the meta-analysis. The overall global incidence of TSI was 10.5 cases per 100,000 persons, resulting in an estimated 768,473 [95% confidence interval, 597,213-939,732] new cases of TSI annually worldwide. The incidence of TSI was higher in low- and middle-income countries (8.72 per 100,000 persons) compared with high-income countries (13.69 per 100,000 persons). Road traffic accidents, followed by falls, were the most common mechanism of TSI worldwide. Overall, 48.8% of patients with TSI required surgery. TSI is a major source of morbidity and mortality throughout the world. Largely preventable mechanisms, including road traffic accidents and falls, are the main causes of TSI globally. Further investigation is needed to delineate local and regional TSI incidences and causes, especially in low- and middle-income countries. Copyright © 2018 Elsevier Inc. All rights reserved.

Community-Supported Data Repositories in Paleobiology: A 'Middle Tail' Between the Geoscientific and Informatics Communities

NASA Astrophysics Data System (ADS)

Williams, J. W.; Ashworth, A. C.; Betancourt, J. L.; Bills, B.; Blois, J.; Booth, R.; Buckland, P.; Charles, D.; Curry, B. B.; Goring, S. J.; Davis, E.; Grimm, E. C.; Graham, R. W.; Smith, A. J.

2015-12-01

Community-supported data repositories (CSDRs) in paleoecology and paleoclimatology have a decades-long tradition and serve multiple critical scientific needs. CSDRs facilitate synthetic large-scale scientific research by providing open-access and curated data that employ community-supported metadata and data standards. CSDRs serve as a 'middle tail' or boundary organization between information scientists and the long-tail community of individual geoscientists collecting and analyzing paleoecological data. Over the past decades, a distributed network of CSDRs has emerged, each serving a particular suite of data and research communities, e.g. Neotoma Paleoecology Database, Paleobiology Database, International Tree Ring Database, NOAA NCEI for Paleoclimatology, Morphobank, iDigPaleo, and Integrated Earth Data Alliance. Recently, these groups have organized into a common Paleobiology Data Consortium dedicated to improving interoperability and sharing best practices and protocols. The Neotoma Paleoecology Database offers one example of an active and growing CSDR, designed to facilitate research into ecological and evolutionary dynamics during recent past global change. Neotoma combines a centralized database structure with distributed scientific governance via multiple virtual constituent data working groups. The Neotoma data model is flexible and can accommodate a variety of paleoecological proxies from many depositional contests. Data input into Neotoma is done by trained Data Stewards, drawn from their communities. Neotoma data can be searched, viewed, and returned to users through multiple interfaces, including the interactive Neotoma Explorer map interface, REST-ful Application Programming Interfaces (APIs), the neotoma R package, and the Tilia stratigraphic software. Neotoma is governed by geoscientists and provides community engagement through training workshops for data contributors, stewards, and users. Neotoma is engaged in the Paleobiological Data Consortium and other efforts to improve interoperability among cyberinfrastructure in the paleogeosciences.

Kounis syndrome due to antibiotics: A global overview from pharmacovigilance databases.

PubMed

Renda, Francesca; Marotta, Elena; Landoni, Giovanni; Belletti, Alessandro; Cuconato, Virginia; Pani, Luca

2016-12-01

Kounis syndrome (KS) is characterized by concurrent presence of anaphylactic and cardiac components. Available evidence suggests that antibiotics are frequently associated to KS. We therefore analyzed KS cases associated with antibiotics use from the two largest pharmacovigilance databases. Two pharmacovigilance databases, EudraVigilance and VigiLyze, were searched for cases reporting the adverse reaction "Kounis Syndrome" with antibiotics as suspected active substance. We analyzed the period from December 1st, 2001 to February 16th, 2016. For the most reported active substance, proportional reporting ratio (PRR) was calculated. A total of 10 cases of KS associated with antibiotic use were retrieved from EudraVigilance database. Mean patients' age was 58.2years and 70% were male. The most frequently reported suspected antibiotic was the combination amoxicillin/clavulanic acid (four cases). VigiLyze database reported 13 KS cases associated to antibiotics. Mean age was 56years and 61% of patients were male. The most frequently reported antibiotic was again the combination amoxicillin/clavulanic acid (five cases). Seven duplicate cases were identified, leaving a total of 16 cases of KS, with six of them associated to amoxicillin/clavulanic acid use. The PRR value for amoxicillin/clavulanic acid against other kinds of antibiotics was 2.62 considering EudraVigilance data and 1.61 considering VigiLyze data. This analysis provided a complete picture of the cases of KS associated with antibiotic use and identified a possible association between amoxicillin/clavulanic acid and KS. Since the number of cases is low, especially considering its wide use, further analyses are needed to confirm the association. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Database Security: What Students Need to Know

ERIC Educational Resources Information Center

Murray, Meg Coffin

2010-01-01

Database security is a growing concern evidenced by an increase in the number of reported incidents of loss of or unauthorized exposure to sensitive data. As the amount of data collected, retained and shared electronically expands, so does the need to understand database security. The Defense Information Systems Agency of the US Department of…

The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts

PubMed Central

Hudson, Lawrence N; Newbold, Tim; Contu, Sara; Hill, Samantha L L; Lysenko, Igor; De Palma, Adriana; Phillips, Helen R P; Senior, Rebecca A; Bennett, Dominic J; Booth, Hollie; Choimes, Argyrios; Correia, David L P; Day, Julie; Echeverría-Londoño, Susy; Garon, Morgan; Harrison, Michelle L K; Ingram, Daniel J; Jung, Martin; Kemp, Victoria; Kirkpatrick, Lucinda; Martin, Callum D; Pan, Yuan; White, Hannah J; Aben, Job; Abrahamczyk, Stefan; Adum, Gilbert B; Aguilar-Barquero, Virginia; Aizen, Marcelo A; Ancrenaz, Marc; Arbeláez-Cortés, Enrique; Armbrecht, Inge; Azhar, Badrul; Azpiroz, Adrián B; Baeten, Lander; Báldi, András; Banks, John E; Barlow, Jos; Batáry, Péter; Bates, Adam J; Bayne, Erin M; Beja, Pedro; Berg, Åke; Berry, Nicholas J; Bicknell, Jake E; Bihn, Jochen H; Böhning-Gaese, Katrin; Boekhout, Teun; Boutin, Céline; Bouyer, Jérémy; Brearley, Francis Q; Brito, Isabel; Brunet, Jörg; Buczkowski, Grzegorz; Buscardo, Erika; Cabra-García, Jimmy; Calviño-Cancela, María; Cameron, Sydney A; Cancello, Eliana M; Carrijo, Tiago F; Carvalho, Anelena L; Castro, Helena; Castro-Luna, Alejandro A; Cerda, Rolando; Cerezo, Alexis; Chauvat, Matthieu; Clarke, Frank M; Cleary, Daniel F R; Connop, Stuart P; D'Aniello, Biagio; da Silva, Pedro Giovâni; Darvill, Ben; Dauber, Jens; Dejean, Alain; Diekötter, Tim; Dominguez-Haydar, Yamileth; Dormann, Carsten F; Dumont, Bertrand; Dures, Simon G; Dynesius, Mats; Edenius, Lars; Elek, Zoltán; Entling, Martin H; Farwig, Nina; Fayle, Tom M; Felicioli, Antonio; Felton, Annika M; Ficetola, Gentile F; Filgueiras, Bruno K C; Fonte, Steven J; Fraser, Lauchlan H; Fukuda, Daisuke; Furlani, Dario; Ganzhorn, Jörg U; Garden, Jenni G; Gheler-Costa, Carla; Giordani, Paolo; Giordano, Simonetta; Gottschalk, Marco S; Goulson, Dave; Gove, Aaron D; Grogan, James; Hanley, Mick E; Hanson, Thor; Hashim, Nor R; Hawes, Joseph E; Hébert, Christian; Helden, Alvin J; Henden, John-André; Hernández, Lionel; Herzog, Felix; Higuera-Diaz, Diego; Hilje, Branko; Horgan, Finbarr G; Horváth, Roland; Hylander, Kristoffer; Isaacs-Cubides, Paola; Ishitani, Masahiro; Jacobs, Carmen T; Jaramillo, Víctor J; Jauker, Birgit; Jonsell, Mats; Jung, Thomas S; Kapoor, Vena; Kati, Vassiliki; Katovai, Eric; Kessler, Michael; Knop, Eva; Kolb, Annette; Kőrösi, Ádám; Lachat, Thibault; Lantschner, Victoria; Le Féon, Violette; LeBuhn, Gretchen; Légaré, Jean-Philippe; Letcher, Susan G; Littlewood, Nick A; López-Quintero, Carlos A; Louhaichi, Mounir; Lövei, Gabor L; Lucas-Borja, Manuel Esteban; Luja, Victor H; Maeto, Kaoru; Magura, Tibor; Mallari, Neil Aldrin; Marin-Spiotta, Erika; Marshall, E J P; Martínez, Eliana; Mayfield, Margaret M; Mikusinski, Grzegorz; Milder, Jeffrey C; Miller, James R; Morales, Carolina L; Muchane, Mary N; Muchane, Muchai; Naidoo, Robin; Nakamura, Akihiro; Naoe, Shoji; Nates-Parra, Guiomar; Navarrete Gutierrez, Dario A; Neuschulz, Eike L; Noreika, Norbertas; Norfolk, Olivia; Noriega, Jorge Ari; Nöske, Nicole M; O'Dea, Niall; Oduro, William; Ofori-Boateng, Caleb; Oke, Chris O; Osgathorpe, Lynne M; Paritsis, Juan; Parra-H, Alejandro; Pelegrin, Nicolás; Peres, Carlos A; Persson, Anna S; Petanidou, Theodora; Phalan, Ben; Philips, T Keith; Poveda, Katja; Power, Eileen F; Presley, Steven J; Proença, Vânia; Quaranta, Marino; Quintero, Carolina; Redpath-Downing, Nicola A; Reid, J Leighton; Reis, Yana T; Ribeiro, Danilo B; Richardson, Barbara A; Richardson, Michael J; Robles, Carolina A; Römbke, Jörg; Romero-Duque, Luz Piedad; Rosselli, Loreta; Rossiter, Stephen J; Roulston, T'ai H; Rousseau, Laurent; Sadler, Jonathan P; Sáfián, Szabolcs; Saldaña-Vázquez, Romeo A; Samnegård, Ulrika; Schüepp, Christof; Schweiger, Oliver; Sedlock, Jodi L; Shahabuddin, Ghazala; Sheil, Douglas; Silva, Fernando A B; Slade, Eleanor M; Smith-Pardo, Allan H; Sodhi, Navjot S; Somarriba, Eduardo J; Sosa, Ramón A; Stout, Jane C; Struebig, Matthew J; Sung, Yik-Hei; Threlfall, Caragh G; Tonietto, Rebecca; Tóthmérész, Béla; Tscharntke, Teja; Turner, Edgar C; Tylianakis, Jason M; Vanbergen, Adam J; Vassilev, Kiril; Verboven, Hans A F; Vergara, Carlos H; Vergara, Pablo M; Verhulst, Jort; Walker, Tony R; Wang, Yanping; Watling, James I; Wells, Konstans; Williams, Christopher D; Willig, Michael R; Woinarski, John C Z; Wolf, Jan H D; Woodcock, Ben A; Yu, Douglas W; Zaitsev, Andrey S; Collen, Ben; Ewers, Rob M; Mace, Georgina M; Purves, Drew W; Scharlemann, Jörn P W; Purvis, Andy

2014-01-01

Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project – and avert – future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups – including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems – http://www.predicts.org.uk). We make site-level summary data available alongside this article. The full database will be publicly available in 2015. PMID:25558364

The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts.

PubMed

Hudson, Lawrence N; Newbold, Tim; Contu, Sara; Hill, Samantha L L; Lysenko, Igor; De Palma, Adriana; Phillips, Helen R P; Senior, Rebecca A; Bennett, Dominic J; Booth, Hollie; Choimes, Argyrios; Correia, David L P; Day, Julie; Echeverría-Londoño, Susy; Garon, Morgan; Harrison, Michelle L K; Ingram, Daniel J; Jung, Martin; Kemp, Victoria; Kirkpatrick, Lucinda; Martin, Callum D; Pan, Yuan; White, Hannah J; Aben, Job; Abrahamczyk, Stefan; Adum, Gilbert B; Aguilar-Barquero, Virginia; Aizen, Marcelo A; Ancrenaz, Marc; Arbeláez-Cortés, Enrique; Armbrecht, Inge; Azhar, Badrul; Azpiroz, Adrián B; Baeten, Lander; Báldi, András; Banks, John E; Barlow, Jos; Batáry, Péter; Bates, Adam J; Bayne, Erin M; Beja, Pedro; Berg, Åke; Berry, Nicholas J; Bicknell, Jake E; Bihn, Jochen H; Böhning-Gaese, Katrin; Boekhout, Teun; Boutin, Céline; Bouyer, Jérémy; Brearley, Francis Q; Brito, Isabel; Brunet, Jörg; Buczkowski, Grzegorz; Buscardo, Erika; Cabra-García, Jimmy; Calviño-Cancela, María; Cameron, Sydney A; Cancello, Eliana M; Carrijo, Tiago F; Carvalho, Anelena L; Castro, Helena; Castro-Luna, Alejandro A; Cerda, Rolando; Cerezo, Alexis; Chauvat, Matthieu; Clarke, Frank M; Cleary, Daniel F R; Connop, Stuart P; D'Aniello, Biagio; da Silva, Pedro Giovâni; Darvill, Ben; Dauber, Jens; Dejean, Alain; Diekötter, Tim; Dominguez-Haydar, Yamileth; Dormann, Carsten F; Dumont, Bertrand; Dures, Simon G; Dynesius, Mats; Edenius, Lars; Elek, Zoltán; Entling, Martin H; Farwig, Nina; Fayle, Tom M; Felicioli, Antonio; Felton, Annika M; Ficetola, Gentile F; Filgueiras, Bruno K C; Fonte, Steven J; Fraser, Lauchlan H; Fukuda, Daisuke; Furlani, Dario; Ganzhorn, Jörg U; Garden, Jenni G; Gheler-Costa, Carla; Giordani, Paolo; Giordano, Simonetta; Gottschalk, Marco S; Goulson, Dave; Gove, Aaron D; Grogan, James; Hanley, Mick E; Hanson, Thor; Hashim, Nor R; Hawes, Joseph E; Hébert, Christian; Helden, Alvin J; Henden, John-André; Hernández, Lionel; Herzog, Felix; Higuera-Diaz, Diego; Hilje, Branko; Horgan, Finbarr G; Horváth, Roland; Hylander, Kristoffer; Isaacs-Cubides, Paola; Ishitani, Masahiro; Jacobs, Carmen T; Jaramillo, Víctor J; Jauker, Birgit; Jonsell, Mats; Jung, Thomas S; Kapoor, Vena; Kati, Vassiliki; Katovai, Eric; Kessler, Michael; Knop, Eva; Kolb, Annette; Kőrösi, Ádám; Lachat, Thibault; Lantschner, Victoria; Le Féon, Violette; LeBuhn, Gretchen; Légaré, Jean-Philippe; Letcher, Susan G; Littlewood, Nick A; López-Quintero, Carlos A; Louhaichi, Mounir; Lövei, Gabor L; Lucas-Borja, Manuel Esteban; Luja, Victor H; Maeto, Kaoru; Magura, Tibor; Mallari, Neil Aldrin; Marin-Spiotta, Erika; Marshall, E J P; Martínez, Eliana; Mayfield, Margaret M; Mikusinski, Grzegorz; Milder, Jeffrey C; Miller, James R; Morales, Carolina L; Muchane, Mary N; Muchane, Muchai; Naidoo, Robin; Nakamura, Akihiro; Naoe, Shoji; Nates-Parra, Guiomar; Navarrete Gutierrez, Dario A; Neuschulz, Eike L; Noreika, Norbertas; Norfolk, Olivia; Noriega, Jorge Ari; Nöske, Nicole M; O'Dea, Niall; Oduro, William; Ofori-Boateng, Caleb; Oke, Chris O; Osgathorpe, Lynne M; Paritsis, Juan; Parra-H, Alejandro; Pelegrin, Nicolás; Peres, Carlos A; Persson, Anna S; Petanidou, Theodora; Phalan, Ben; Philips, T Keith; Poveda, Katja; Power, Eileen F; Presley, Steven J; Proença, Vânia; Quaranta, Marino; Quintero, Carolina; Redpath-Downing, Nicola A; Reid, J Leighton; Reis, Yana T; Ribeiro, Danilo B; Richardson, Barbara A; Richardson, Michael J; Robles, Carolina A; Römbke, Jörg; Romero-Duque, Luz Piedad; Rosselli, Loreta; Rossiter, Stephen J; Roulston, T'ai H; Rousseau, Laurent; Sadler, Jonathan P; Sáfián, Szabolcs; Saldaña-Vázquez, Romeo A; Samnegård, Ulrika; Schüepp, Christof; Schweiger, Oliver; Sedlock, Jodi L; Shahabuddin, Ghazala; Sheil, Douglas; Silva, Fernando A B; Slade, Eleanor M; Smith-Pardo, Allan H; Sodhi, Navjot S; Somarriba, Eduardo J; Sosa, Ramón A; Stout, Jane C; Struebig, Matthew J; Sung, Yik-Hei; Threlfall, Caragh G; Tonietto, Rebecca; Tóthmérész, Béla; Tscharntke, Teja; Turner, Edgar C; Tylianakis, Jason M; Vanbergen, Adam J; Vassilev, Kiril; Verboven, Hans A F; Vergara, Carlos H; Vergara, Pablo M; Verhulst, Jort; Walker, Tony R; Wang, Yanping; Watling, James I; Wells, Konstans; Williams, Christopher D; Willig, Michael R; Woinarski, John C Z; Wolf, Jan H D; Woodcock, Ben A; Yu, Douglas W; Zaitsev, Andrey S; Collen, Ben; Ewers, Rob M; Mace, Georgina M; Purves, Drew W; Scharlemann, Jörn P W; Purvis, Andy

2014-12-01

Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species' threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project - and avert - future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups - including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems - http://www.predicts.org.uk). We make site-level summary data available alongside this article. The full database will be publicly available in 2015.

Total Volcanic Stratospheric Aerosol Optical Depths and Implications for Global Climate Change

NASA Technical Reports Server (NTRS)

Ridley, D. A.; Solomon, S.; Barnes, J. E.; Burlakov, V. D.; Deshler, T.; Dolgii, S. I.; Herber, A. B.; Nagai, T.; Neely, R. R., III; Nevzorov, A. V.;

A multiyear, global gridded fossil fuel CO2 emission data product: Evaluation and analysis of results

NASA Astrophysics Data System (ADS)

Asefi-Najafabady, S.; Rayner, P. J.; Gurney, K. R.; McRobert, A.; Song, Y.; Coltin, K.; Huang, J.; Elvidge, C.; Baugh, K.

2014-09-01

High-resolution, global quantification of fossil fuel CO2 emissions is emerging as a critical need in carbon cycle science and climate policy. We build upon a previously developed fossil fuel data assimilation system (FFDAS) for estimating global high-resolution fossil fuel CO2 emissions. We have improved the underlying observationally based data sources, expanded the approach through treatment of separate emitting sectors including a new pointwise database of global power plants, and extended the results to cover a 1997 to 2010 time series at a spatial resolution of 0.1°. Long-term trend analysis of the resulting global emissions shows subnational spatial structure in large active economies such as the United States, China, and India. These three countries, in particular, show different long-term trends and exploration of the trends in nighttime lights, and population reveal a decoupling of population and emissions at the subnational level. Analysis of shorter-term variations reveals the impact of the 2008-2009 global financial crisis with widespread negative emission anomalies across the U.S. and Europe. We have used a center of mass (CM) calculation as a compact metric to express the time evolution of spatial patterns in fossil fuel CO2 emissions. The global emission CM has moved toward the east and somewhat south between 1997 and 2010, driven by the increase in emissions in China and South Asia over this time period. Analysis at the level of individual countries reveals per capita CO2 emission migration in both Russia and India. The per capita emission CM holds potential as a way to succinctly analyze subnational shifts in carbon intensity over time. Uncertainties are generally lower than the previous version of FFDAS due mainly to an improved nightlight data set.

Canopies to Continents: What spatial scales are needed to represent landcover distributions in earth system models?

NASA Astrophysics Data System (ADS)

Guenther, A. B.; Duhl, T.

2011-12-01

Increasing computational resources have enabled a steady improvement in the spatial resolution used for earth system models. Land surface models and landcover distributions have kept ahead by providing higher spatial resolution than typically used in these models. Satellite observations have played a major role in providing high resolution landcover distributions over large regions or the entire earth surface but ground observations are needed to calibrate these data and provide accurate inputs for models. As our ability to resolve individual landscape components improves, it is important to consider what scale is sufficient for providing inputs to earth system models. The required spatial scale is dependent on the processes being represented and the scientific questions being addressed. This presentation will describe the development a contiguous U.S. landcover database using high resolution imagery (1 to 1000 meters) and surface observations of species composition and other landcover characteristics. The database includes plant functional types and species composition and is suitable for driving land surface models (CLM and MEGAN) that predict land surface exchange of carbon, water, energy and biogenic reactive gases (e.g., isoprene, sesquiterpenes, and NO). We investigate the sensitivity of model results to landcover distributions with spatial scales ranging over six orders of magnitude (1 meter to 1000000 meters). The implications for predictions of regional climate and air quality will be discussed along with recommendations for regional and global earth system modeling.

The Edinburgh Electronic Veterinary Curriculum: an online program-wide learning and support environment for veterinary education.

PubMed

Ellaway, Rachel; Pettigrew, Graham; Rhind, Susan; Dewhurst, David

2005-01-01

The Edinburgh Electronic Veterinary Curriculum (EEVeC) is a purpose-built virtual learning support environment for the veterinary medicine program at the University of Edinburgh. It is Web based and adapted from a system developed for the human medical curriculum. It is built around a set of databases and learning objects and incorporates features such as course materials, personalized timetables, staff and student contact pages, a notice board, and discussion forums. The EEVeC also contains global or generic resources such as information on quality enhancement and research options. Many of these features contribute to the aim of building a learning community, but a challenge has been to introduce specific features that enhance student learning. One of these is a searchable lecture database in which learning activities such as quizzes and computer-aided learning exercises (CALs) can be embedded to supplement a synopsis of the lecture and address the key needs of integration and reinforcement of learning. Statistics of use indicate extensive student activity during evenings and weekends, with a pattern of increased usage over the years as more features become available and staff and students progressively engage with the system. An essential feature of EEVeC is its flexibility and the way in which it is evolving to meet the changing needs of the teaching program.

A Dynamic Integration Method for Borderland Database using OSM data

NASA Astrophysics Data System (ADS)

Zhou, X.-G.; Jiang, Y.; Zhou, K.-X.; Zeng, L.

2013-11-01

Spatial data is the fundamental of borderland analysis of the geography, natural resources, demography, politics, economy, and culture. As the spatial region used in borderland researching usually covers several neighboring countries' borderland regions, the data is difficult to achieve by one research institution or government. VGI has been proven to be a very successful means of acquiring timely and detailed global spatial data at very low cost. Therefore VGI will be one reasonable source of borderland spatial data. OpenStreetMap (OSM) has been known as the most successful VGI resource. But OSM data model is far different from the traditional authoritative geographic information. Thus the OSM data needs to be converted to the scientist customized data model. With the real world changing fast, the converted data needs to be updated. Therefore, a dynamic integration method for borderland data is presented in this paper. In this method, a machine study mechanism is used to convert the OSM data model to the user data model; a method used to select the changed objects in the researching area over a given period from OSM whole world daily diff file is presented, the change-only information file with designed form is produced automatically. Based on the rules and algorithms mentioned above, we enabled the automatic (or semiautomatic) integration and updating of the borderland database by programming. The developed system was intensively tested.

The practical evaluation of DNA barcode efficacy.

PubMed

Spouge, John L; Mariño-Ramírez, Leonardo

2012-01-01

This chapter describes a workflow for measuring the efficacy of a barcode in identifying species. First, assemble individual sequence databases corresponding to each barcode marker. A controlled collection of taxonomic data is preferable to GenBank data, because GenBank data can be problematic, particularly when comparing barcodes based on more than one marker. To ensure proper controls when evaluating species identification, specimens not having a sequence in every marker database should be discarded. Second, select a computer algorithm for assigning species to barcode sequences. No algorithm has yet improved notably on assigning a specimen to the species of its nearest neighbor within a barcode database. Because global sequence alignments (e.g., with the Needleman-Wunsch algorithm, or some related algorithm) examine entire barcode sequences, they generally produce better species assignments than local sequence alignments (e.g., with BLAST). No neighboring method (e.g., global sequence similarity, global sequence distance, or evolutionary distance based on a global alignment) has yet shown a notable superiority in identifying species. Finally, "the probability of correct identification" (PCI) provides an appropriate measurement of barcode efficacy. The overall PCI for a data set is the average of the species PCIs, taken over all species in the data set. This chapter states explicitly how to calculate PCI, how to estimate its statistical sampling error, and how to use data on PCR failure to set limits on how much improvements in PCR technology can improve species identification.

Acoustic telemetry observation systems: challenges encountered and overcome in the Laurentian Great Lakes

USGS Publications Warehouse

Krueger, Charles C.; Holbrook, Christopher; Binder, Thomas R.; Vandergoot, Christopher; Hayden, Todd A.; Hondorp, Darryl W.; Nate, Nancy; Paige, Kelli; Riley, Stephen; Fisk, Aaron T.; Cooke, Steven J.

2017-01-01

The Great Lakes Acoustic Telemetry Observation System (GLATOS), organized in 2012, aims to advance and improve conservation and management of Great Lakes fishes by providing information on behavior, habitat use, and population dynamics. GLATOS faced challenges during establishment, including a funding agency-imposed urgency to initiate projects, a lack of telemetry expertise, and managing a flood of data. GLATOS now connects 190+ investigators, provides project consultation, maintains a web-based data portal, contributes data to Ocean Tracking Network’s global database, loans equipment, and promotes science transfer to managers. The GLATOS database currently has 50+ projects, 39 species tagged, 8000+ fish released, and 150+ million tag detections. Lessons learned include (1) seek advice from others experienced in telemetry; (2) organize networks prior to when shared data is urgently needed; (3) establish a data management system so that all receivers can contribute to every project; (4) hold annual meetings to foster relationships; (5) involve fish managers to ensure relevancy; and (6) staff require full-time commitment to lead and coordinate projects and to analyze data and publish results.

Antimicrobial resistance surveillance in the genomic age.

PubMed

McArthur, Andrew G; Tsang, Kara K

2017-01-01

The loss of effective antimicrobials is reducing our ability to protect the global population from infectious disease. However, the field of antibiotic drug discovery and the public health monitoring of antimicrobial resistance (AMR) is beginning to exploit the power of genome and metagenome sequencing. The creation of novel AMR bioinformatics tools and databases and their continued development will advance our understanding of the molecular mechanisms and threat severity of antibiotic resistance, while simultaneously improving our ability to accurately predict and screen for antibiotic resistance genes within environmental, agricultural, and clinical settings. To do so, efforts must be focused toward exploiting the advancements of genome sequencing and information technology. Currently, AMR bioinformatics software and databases reflect different scopes and functions, each with its own strengths and weaknesses. A review of the available tools reveals common approaches and reference data but also reveals gaps in our curated data, models, algorithms, and data-sharing tools that must be addressed to conquer the limitations and areas of unmet need within the AMR research field before DNA sequencing can be fully exploited for AMR surveillance and improved clinical outcomes. © 2016 New York Academy of Sciences.

The GTN-P Data Management System: A central database for permafrost monitoring parameters of the Global Terrestrial Network for Permafrost (GTN-P) and beyond

NASA Astrophysics Data System (ADS)

Lanckman, Jean-Pierre; Elger, Kirsten; Karlsson, Ævar Karl; Johannsson, Halldór; Lantuit, Hugues

2013-04-01

Permafrost is a direct indicator of climate change and has been identified as Essential Climate Variable (ECV) by the global observing community. The monitoring of permafrost temperatures, active-layer thicknesses and other parameters has been performed for several decades already, but it was brought together within the Global Terrestrial Network for Permafrost (GTN-P) in the 1990's only, including the development of measurement protocols to provide standardized data. GTN-P is the primary international observing network for permafrost sponsored by the Global Climate Observing System (GCOS) and the Global Terrestrial Observing System (GTOS), and managed by the International Permafrost Association (IPA). All GTN-P data was outfitted with an "open data policy" with free data access via the World Wide Web. The existing data, however, is far from being homogeneous: it is not yet optimized for databases, there is no framework for data reporting or archival and data documentation is incomplete. As a result, and despite the utmost relevance of permafrost in the Earth's climate system, the data has not been used by as many researchers as intended by the initiators of the programs. While the monitoring of many other ECVs has been tackled by organized international networks (e.g. FLUXNET), there is still no central database for all permafrost-related parameters. The European Union project PAGE21 created opportunities to develop this central database for permafrost monitoring parameters of GTN-P during the duration of the project and beyond. The database aims to be the one location where the researcher can find data, metadata, and information of all relevant parameters for a specific site. Each component of the Data Management System (DMS), including parameters, data levels and metadata formats were developed in cooperation with the GTN-P and the IPA. The general framework of the GTN-P DMS is based on an object oriented model (OOM), open for as many parameters as possible, and implemented into a spatial database. To ensure interoperability and enable potential inter-database search, field names are following international metadata standards and are based on a control vocabulary registry. Tools are developed to provide data processing, analysis capability, and quality control. Our system aims to be a reference model, improvable and reusable. It allows a maximum top-down and bottom-up data flow, giving scientists one global searchable data and metadata repository, the public a full access to scientific data, and the policy maker a powerful cartographic and statistical tool. To engage the international community in GTN-P, it was essential to develop an online interface for data upload. Aim for this was that it is easy-to-use and allows data input with a minimum of technical and personal effort. In addition to this, large efforts will have to be produced in order to be able to query, visualize and retrieve information over many platforms and type of measurements. Ultimately, it is not the layer in itself that matter, but more the relationship that these information layers maintain with each other.

Rapid Prototyping-Unmanned Combat Air Vehicle (UCAV)/Sensorcraft

DTIC Science & Technology

2008-01-01

model. RP may prove to be the fastest means to create a bridge between these CFD and experimental ground testing databases . In the past, it took...UCAV X-45A wind tunnel model within the /RB) ment FD results provide a database of global surface and off-body measurements. It is imperative t...extend the knowledge database for a given aircraft configuration beyond the ground test envelope and into the fligh regime. Working in tandem, in an

Estimating the Uncertainty and Predictive Capabilities of Three-Dimensional Earth Models (Postprint)

DTIC Science & Technology

2012-03-22

www.isc.ac.uk). This global database includes more than 7,000 events whose epicentral location accuracy is known to at least 5 km. GT events with...region, which illustrates the difficulty of validating a model with travel times alone. However, the IASPEI REL database is currently the highest...S (right) paths in the IASPEI REL ground-truth database . Stations are represented by purple triangles and events by gray circles. Note the sparse

GIEMS-D3: A new long-term, dynamical, high-spatial resolution inundation extent dataset at global scale

NASA Astrophysics Data System (ADS)

Aires, Filipe; Miolane, Léo; Prigent, Catherine; Pham Duc, Binh; Papa, Fabrice; Fluet-Chouinard, Etienne; Lehner, Bernhard

2017-04-01

The Global Inundation Extent from Multi-Satellites (GIEMS) provides multi-year monthly variations of the global surface water extent at 25kmx25km resolution. It is derived from multiple satellite observations. Its spatial resolution is usually compatible with climate model outputs and with global land surface model grids but is clearly not adequate for local applications that require the characterization of small individual water bodies. There is today a strong demand for high-resolution inundation extent datasets, for a large variety of applications such as water management, regional hydrological modeling, or for the analysis of mosquitos-related diseases. A new procedure is introduced to downscale the GIEMS low spatial resolution inundations to a 3 arc second (90 m) dataset. The methodology is based on topography and hydrography information from the HydroSHEDS database. A new floodability index is adopted and an innovative smoothing procedure is developed to ensure the smooth transition, in the high-resolution maps, between the low-resolution boxes from GIEMS. Topography information is relevant for natural hydrology environments controlled by elevation, but is more limited in human-modified basins. However, the proposed downscaling approach is compatible with forthcoming fusion with other more pertinent satellite information in these difficult regions. The resulting GIEMS-D3 database is the only high spatial resolution inundation database available globally at the monthly time scale over the 1993-2007 period. GIEMS-D3 is assessed by analyzing its spatial and temporal variability, and evaluated by comparisons to other independent satellite observations from visible (Google Earth and Landsat), infrared (MODIS) and active microwave (SAR).

75 FR 82202 - Utilization of Global Entry Kiosks by NEXUS and SENTRI Participants

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-29

... terrorist databases, a 10- fingerprint law enforcement check and a personal interview with a CBP officer. An... databases, a 10-fingerprint law enforcement check and a personal interview with a CBP officer. Any one of... be posted without change to http://www.regulations.gov , including any personal information provided...

Global and Local Collaborators: A Study of Scientific Collaboration.

ERIC Educational Resources Information Center

Pao, Miranda Lee

1992-01-01

Describes an empirical study that was conducted to examine the relationship among scientific co-authorship (i.e., collaboration), research funding, and productivity. Bibliographic records from the MEDLINE database that used the subject heading for schistosomiasis are analyzed, global and local collaborators are discussed, and scientific…

Global distribution of soil organic carbon - Part 1: Masses and frequency distributions of SOC stocks for the tropics, permafrost regions, wetlands, and the world

NASA Astrophysics Data System (ADS)

Köchy, M.; Hiederer, R.; Freibauer, A.

2015-04-01

The global soil organic carbon (SOC) mass is relevant for the carbon cycle budget and thus atmospheric carbon concentrations. We review current estimates of SOC stocks and mass (stock × area) in wetlands, permafrost and tropical regions and the world in the upper 1 m of soil. The Harmonized World Soil Database (HWSD) v.1.2 provides one of the most recent and coherent global data sets of SOC, giving a total mass of 2476 Pg when using the original values for bulk density. Adjusting the HWSD's bulk density (BD) of soil high in organic carbon results in a mass of 1230 Pg, and additionally setting the BD of Histosols to 0.1 g cm-3 (typical of peat soils), results in a mass of 1062 Pg. The uncertainty in BD of Histosols alone introduces a range of -56 to +180 Pg C into the estimate of global SOC mass in the top 1 m, larger than estimates of global soil respiration. We report the spatial distribution of SOC stocks per 0.5 arcminutes; the areal masses of SOC; and the quantiles of SOC stocks by continents, wetland types, and permafrost types. Depending on the definition of "wetland", wetland soils contain between 82 and 158 Pg SOC. With more detailed estimates for permafrost from the Northern Circumpolar Soil Carbon Database (496 Pg SOC) and tropical peatland carbon incorporated, global soils contain 1325 Pg SOC in the upper 1 m, including 421 Pg in tropical soils, whereof 40 Pg occurs in tropical wetlands. Global SOC amounts to just under 3000 Pg when estimates for deeper soil layers are included. Variability in estimates is due to variation in definitions of soil units, differences in soil property databases, scarcity of information about soil carbon at depths > 1 m in peatlands, and variation in definitions of "peatland".

The North American Forest Database: going beyond national-level forest resource assessment statistics.

PubMed

Smith, W Brad; Cuenca Lara, Rubí Angélica; Delgado Caballero, Carina Edith; Godínez Valdivia, Carlos Isaías; Kapron, Joseph S; Leyva Reyes, Juan Carlos; Meneses Tovar, Carmen Lourdes; Miles, Patrick D; Oswalt, Sonja N; Ramírez Salgado, Mayra; Song, Xilong Alex; Stinson, Graham; Villela Gaytán, Sergio Armando

2018-05-21

Forests cannot be managed sustainably without reliable data to inform decisions. National Forest Inventories (NFI) tend to report national statistics, with sub-national stratification based on domestic ecological classification systems. It is becoming increasingly important to be able to report statistics on ecosystems that span international borders, as global change and globalization expand stakeholders' spheres of concern. The state of a transnational ecosystem can only be properly assessed by examining the entire ecosystem. In global forest resource assessments, it may be useful to break national statistics down by ecosystem, especially for large countries. The Inventory and Monitoring Working Group (IMWG) of the North American Forest Commission (NAFC) has begun developing a harmonized North American Forest Database (NAFD) for managing forest inventory data, enabling consistent, continental-scale forest assessment supporting ecosystem-level reporting and relational queries. The first iteration of the database contains data describing 1.9 billion ha, including 677.5 million ha of forest. Data harmonization is made challenging by the existence of definitions and methodologies tailored to suit national circumstances, emerging from each country's professional forestry development. This paper reports the methods used to synchronize three national forest inventories, starting with a small suite of variables and attributes.

GenomeVista

DOE Office of Scientific and Technical Information (OSTI.GOV)

Poliakov, Alexander; Couronne, Olivier

2002-11-04

Aligning large vertebrate genomes that are structurally complex poses a variety of problems not encountered on smaller scales. Such genomes are rich in repetitive elements and contain multiple segmental duplications, which increases the difficulty of identifying true orthologous SNA segments in alignments. The sizes of the sequences make many alignment algorithms designed for comparing single proteins extremely inefficient when processing large genomic intervals. We integrated both local and global alignment tools and developed a suite of programs for automatically aligning large vertebrate genomes and identifying conserved non-coding regions in the alignments. Our method uses the BLAT local alignment program tomore » find anchors on the base genome to identify regions of possible homology for a query sequence. These regions are postprocessed to find the best candidates which are then globally aligned using the AVID global alignment program. In the last step conserved non-coding segments are identified using VISTA. Our methods are fast and the resulting alignments exhibit a high degree of sensitivity, covering more than 90% of known coding exons in the human genome. The GenomeVISTA software is a suite of Perl programs that is built on a MySQL database platform. The scheduler gets control data from the database, builds a queve of jobs, and dispatches them to a PC cluster for execution. The main program, running on each node of the cluster, processes individual sequences. A Perl library acts as an interface between the database and the above programs. The use of a separate library allows the programs to function independently of the database schema. The library also improves on the standard Perl MySQL database interfere package by providing auto-reconnect functionality and improved error handling.« less

The data quality analyzer: A quality control program for seismic data

NASA Astrophysics Data System (ADS)

Ringler, A. T.; Hagerty, M. T.; Holland, J.; Gonzales, A.; Gee, L. S.; Edwards, J. D.; Wilson, D.; Baker, A. M.

2015-03-01

The U.S. Geological Survey's Albuquerque Seismological Laboratory (ASL) has several initiatives underway to enhance and track the quality of data produced from ASL seismic stations and to improve communication about data problems to the user community. The Data Quality Analyzer (DQA) is one such development and is designed to characterize seismic station data quality in a quantitative and automated manner. The DQA consists of a metric calculator, a PostgreSQL database, and a Web interface: The metric calculator, SEEDscan, is a Java application that reads and processes miniSEED data and generates metrics based on a configuration file. SEEDscan compares hashes of metadata and data to detect changes in either and performs subsequent recalculations as needed. This ensures that the metric values are up to date and accurate. SEEDscan can be run as a scheduled task or on demand. The PostgreSQL database acts as a central hub where metric values and limited station descriptions are stored at the channel level with one-day granularity. The Web interface dynamically loads station data from the database and allows the user to make requests for time periods of interest, review specific networks and stations, plot metrics as a function of time, and adjust the contribution of various metrics to the overall quality grade of the station. The quantification of data quality is based on the evaluation of various metrics (e.g., timing quality, daily noise levels relative to long-term noise models, and comparisons between broadband data and event synthetics). Users may select which metrics contribute to the assessment and those metrics are aggregated into a "grade" for each station. The DQA is being actively used for station diagnostics and evaluation based on the completed metrics (availability, gap count, timing quality, deviation from a global noise model, deviation from a station noise model, coherence between co-located sensors, and comparison between broadband data and synthetics for earthquakes) on stations in the Global Seismographic Network and Advanced National Seismic System.

Soil pH Errors Propagation from Measurements to Spatial Predictions - Cost Benefit Analysis and Risk Assessment Implications for Practitioners and Modelers

NASA Astrophysics Data System (ADS)

Owens, P. R.; Libohova, Z.; Seybold, C. A.; Wills, S. A.; Peaslee, S.; Beaudette, D.; Lindbo, D. L.

2017-12-01

The measurement errors and spatial prediction uncertainties of soil properties in the modeling community are usually assessed against measured values when available. However, of equal importance is the assessment of errors and uncertainty impacts on cost benefit analysis and risk assessments. Soil pH was selected as one of the most commonly measured soil properties used for liming recommendations. The objective of this study was to assess the error size from different sources and their implications with respect to management decisions. Error sources include measurement methods, laboratory sources, pedotransfer functions, database transections, spatial aggregations, etc. Several databases of measured and predicted soil pH were used for this study including the United States National Cooperative Soil Survey Characterization Database (NCSS-SCDB), the US Soil Survey Geographic (SSURGO) Database. The distribution of errors among different sources from measurement methods to spatial aggregation showed a wide range of values. The greatest RMSE of 0.79 pH units was from spatial aggregation (SSURGO vs Kriging), while the measurement methods had the lowest RMSE of 0.06 pH units. Assuming the order of data acquisition based on the transaction distance i.e. from measurement method to spatial aggregation the RMSE increased from 0.06 to 0.8 pH units suggesting an "error propagation". This has major implications for practitioners and modeling community. Most soil liming rate recommendations are based on 0.1 pH unit increments, while the desired soil pH level increments are based on 0.4 to 0.5 pH units. Thus, even when the measured and desired target soil pH are the same most guidelines recommend 1 ton ha-1 lime, which translates in 111 ha-1 that the farmer has to factor in the cost-benefit analysis. However, this analysis need to be based on uncertainty predictions (0.5-1.0 pH units) rather than measurement errors (0.1 pH units) which would translate in 555-1,111 investment that need to be assessed against the risk. The modeling community can benefit from such analysis, however, error size and spatial distribution for global and regional predictions need to be assessed against the variability of other drivers and impact on management decisions.

AERONET Version 3 Release: Providing Significant Improvements for Multi-Decadal Global Aerosol Database and Near Real-Time Validation

NASA Technical Reports Server (NTRS)

Holben, Brent; Slutsker, Ilya; Giles, David; Eck, Thomas; Smirnov, Alexander; Sinyuk, Aliaksandr; Schafer, Joel; Sorokin, Mikhail; Rodriguez, Jon; Kraft, Jason;

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)

PubMed Central

Dempsey, Donald M; Hendrickson, Robert Curtis; Orton, Richard J; Siddell, Stuart G; Smith, Donald B

2018-01-01

Abstract The International Committee on Taxonomy of Viruses (ICTV) is charged with the task of developing, refining, and maintaining a universal virus taxonomy. This task encompasses the classification of virus species and higher-level taxa according to the genetic and biological properties of their members; naming virus taxa; maintaining a database detailing the currently approved taxonomy; and providing the database, supporting proposals, and other virus-related information from an open-access, public web site. The ICTV web site (http://ictv.global) provides access to the current taxonomy database in online and downloadable formats, and maintains a complete history of virus taxa back to the first release in 1971. The ICTV has also published the ICTV Report on Virus Taxonomy starting in 1971. This Report provides a comprehensive description of all virus taxa covering virus structure, genome structure, biology and phylogenetics. The ninth ICTV report, published in 2012, is available as an open-access online publication from the ICTV web site. The current, 10th report (http://ictv.global/report/), is being published online, and is replacing the previous hard-copy edition with a completely open access, continuously updated publication. No other database or resource exists that provides such a comprehensive, fully annotated compendium of information on virus taxa and taxonomy. PMID:29040670

The TREAT-NMD DMD Global Database: Analysis of More than 7,000 Duchenne Muscular Dystrophy Mutations

PubMed Central

Bladen, Catherine L; Salgado, David; Monges, Soledad; Foncuberta, Maria E; Kekou, Kyriaki; Kosma, Konstantina; Dawkins, Hugh; Lamont, Leanne; Roy, Anna J; Chamova, Teodora; Guergueltcheva, Velina; Chan, Sophelia; Korngut, Lawrence; Campbell, Craig; Dai, Yi; Wang, Jen; Barišić, Nina; Brabec, Petr; Lahdetie, Jaana; Walter, Maggie C; Schreiber-Katz, Olivia; Karcagi, Veronika; Garami, Marta; Viswanathan, Venkatarman; Bayat, Farhad; Buccella, Filippo; Kimura, En; Koeks, Zaïda; van den Bergen, Janneke C; Rodrigues, Miriam; Roxburgh, Richard; Lusakowska, Anna; Kostera-Pruszczyk, Anna; Zimowski, Janusz; Santos, Rosário; Neagu, Elena; Artemieva, Svetlana; Rasic, Vedrana Milic; Vojinovic, Dina; Posada, Manuel; Bloetzer, Clemens; Jeannet, Pierre-Yves; Joncourt, Franziska; Díaz-Manera, Jordi; Gallardo, Eduard; Karaduman, A Ayşe; Topaloğlu, Haluk; El Sherif, Rasha; Stringer, Angela; Shatillo, Andriy V; Martin, Ann S; Peay, Holly L; Bellgard, Matthew I; Kirschner, Jan; Flanigan, Kevin M; Straub, Volker; Bushby, Kate; Verschuuren, Jan; Aartsma-Rus, Annemieke; Béroud, Christophe; Lochmüller, Hanns

2015-01-01

Analyzing the type and frequency of patient-specific mutations that give rise to Duchenne muscular dystrophy (DMD) is an invaluable tool for diagnostics, basic scientific research, trial planning, and improved clinical care. Locus-specific databases allow for the collection, organization, storage, and analysis of genetic variants of disease. Here, we describe the development and analysis of the TREAT-NMD DMD Global database (http://umd.be/TREAT_DMD/). We analyzed genetic data for 7,149 DMD mutations held within the database. A total of 5,682 large mutations were observed (80% of total mutations), of which 4,894 (86%) were deletions (1 exon or larger) and 784 (14%) were duplications (1 exon or larger). There were 1,445 small mutations (smaller than 1 exon, 20% of all mutations), of which 358 (25%) were small deletions and 132 (9%) small insertions and 199 (14%) affected the splice sites. Point mutations totalled 756 (52% of small mutations) with 726 (50%) nonsense mutations and 30 (2%) missense mutations. Finally, 22 (0.3%) mid-intronic mutations were observed. In addition, mutations were identified within the database that would potentially benefit from novel genetic therapies for DMD including stop codon read-through therapies (10% of total mutations) and exon skipping therapy (80% of deletions and 55% of total mutations). PMID:25604253

The New Face of FLUXNET: Redesigning the Web Site and Data Organization to Enhance the User Experience

NASA Astrophysics Data System (ADS)

Shanafield, Harold; Shamblin, Stephanie; Devarakonda, Ranjeet; McMurry, Ben; Walker Beaty, Tammy; Wilson, Bruce; Cook, Robert B.

2011-02-01

The FLUXNET global network of regional flux tower networks serves to coordinate the regional and global analysis of eddy covariance based CO2, water vapor and energy flux measurements taken at more than 500 sites in continuous long-term operation. The FLUXNET database presently contains information about the location, characteristics, and data availability of each of these sites. To facilitate the coordination and distribution of this information, we redesigned the underlying database and associated web site. We chose the PostgreSQL database as a platform based on its performance, stability and GIS extensions. PostreSQL allows us to enhance our search and presentation capabilities, which will in turn provide increased functionality for users seeking to understand the FLUXNET data. The redesigned database will also significantly decrease the burden of managing such highly varied data. The website is being developed using the Drupal content management system, which provides many community-developed modules and a robust framework for custom feature development. In parallel, we are working with the regional networks to ensure that the information in the FLUXNET database is identical to that in the regional networks. Going forward, we also plan to develop an automated way to synchronize information with the regional networks.

Development of the USGS national land-cover database over two decades

USGS Publications Warehouse

Xian, George Z.; Homer, Collin G.; Yang, Limin; Weng, Qihao

2011-01-01

Land-cover composition and change have profound impacts on terrestrial ecosystems. Land-cover and land-use (LCLU) conditions and their changes can affect social and physical environments by altering ecosystem conditions and services. Information about LCLU change is often used to produce landscape-based metrics and evaluate landscape conditions to monitor LCLU status and trends over a specific time interval (Loveland et al. 2002; Coppin et al. 2004; Lunetta et al. 2006). Continuous, accurate, and up-to-date land-cover data are important for natural resource and ecosystem management and are needed to support consistent monitoring of landscape attributes over time. Large-area land-cover information at regional, national, and global scales is critical for monitoring landscape variations over large areas.

bold: The Barcode of Life Data System (http://www.barcodinglife.org)

PubMed Central

RATNASINGHAM, SUJEEVAN; HEBERT, PAUL D N

2007-01-01

The Barcode of Life Data System (bold) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. By assembling molecular, morphological and distributional data, it bridges a traditional bioinformatics chasm. bold is freely available to any researcher with interests in DNA barcoding. By providing specialized services, it aids the assembly of records that meet the standards needed to gain BARCODE designation in the global sequence databases. Because of its web-based delivery and flexible data security model, it is also well positioned to support projects that involve broad research alliances. This paper provides a brief introduction to the key elements of bold, discusses their functional capabilities, and concludes by examining computational resources and future prospects. PMID:18784790

Some thoughts on cartographic and geographic information systems for the 1980's

USGS Publications Warehouse

Starr, L.E.; Anderson, Kirk E.

1981-01-01

The U.S. Geological Survey is adopting computer techniques to meet the expanding need for cartographic base category data. Digital methods are becoming increasingly important in the mapmaking process, and the demand is growing for physical, social, and economic data. Recognizing these emerging needs, the National Mapping Division began, several years ago, an active program to develop advanced digital methods to support cartographic and geographic data processing. An integrated digital cartographic database would meet the anticipated needs. Such a database would contain data from various sources, and could provide a variety of standard and customized map and digital data file products. This cartographic database soon will be technologically feasible. The present trends in the economics of cartographic and geographic data handling and the growing needs for integrated physical, social, and economic data make such a database virtually mandatory.

The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) after fifteen years: Review of global products

NASA Astrophysics Data System (ADS)

Abrams, Michael; Tsu, Hiroji; Hulley, Glynn; Iwao, Koki; Pieri, David; Cudahy, Tom; Kargel, Jeffrey

2015-06-01

The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is a 15-channel imaging instrument operating on NASA's Terra satellite. A joint project between the U.S. National Aeronautics and Space Administration and Japan's Ministry of Economy, Trade, and Industry, ASTER has been acquiring data for 15 years, since March 2000. The archive now contains over 2.8 million scenes; for the majority of them, a stereo pair was collected using nadir and backward telescopes imaging in the NIR wavelength. The majority of users require only a few to a few dozen scenes for their work. Studies have ranged over numerous scientific disciplines, and many practical applications have benefited from ASTER's unique data. A few researchers have been able to mine the entire ASTER archive, that is now global in extent due to the long duration of the mission. Six examples of global products are described in this contribution: the ASTER Global Digital Elevation Model (GDEM), the most complete, highest resolution DEM available to all users; the ASTER Emissivity Database (ASTER GED), a global 5-band emissivity map of the land surface; the ASTER Global Urban Area Map (AGURAM), a 15-m resolution database of over 3500 cities; the ASTER Volcano Archive (AVA), an archive of over 1500 active volcanoes; ASTER Geoscience products of the continent of Australia; and the Global Ice Monitoring from Space (GLIMS) project.

Measuring the extent and effectiveness of protected areas as an indicator for meeting global biodiversity targets

PubMed Central

Chape, S; Harrison, J; Spalding, M; Lysenko, I

2005-01-01

There are now over 100 000 protected areas worldwide, covering over 12% of the Earth's land surface. These areas represent one of the most significant human resource use allocations on the planet. The importance of protected areas is reflected in their widely accepted role as an indicator for global targets and environmental assessments. However, measuring the number and extent of protected areas only provides a unidimensional indicator of political commitment to biodiversity conservation. Data on the geographic location and spatial extent of protected areas will not provide information on a key determinant for meeting global biodiversity targets: ‘effectiveness’ in conserving biodiversity. Although tools are being devised to assess management effectiveness, there is no globally accepted metric. Nevertheless, the numerical, spatial and geographic attributes of protected areas can be further enhanced by investigation of the biodiversity coverage of these protected areas, using species, habitats or biogeographic classifications. This paper reviews the current global extent of protected areas in terms of geopolitical and habitat coverage, and considers their value as a global indicator of conservation action or response. The paper discusses the role of the World Database on Protected Areas and collection and quality control issues, and identifies areas for improvement, including how conservation effectiveness indicators may be included in the database to improve the value of protected areas data as an indicator for meeting global biodiversity targets. PMID:15814356

Unmet need for induction of labor in Africa: secondary analysis from the 2004 - 2005 WHO Global Maternal and Perinatal Health Survey (A cross-sectional survey)

PubMed Central

2012-01-01

Background Induction of labor is being increasingly used to prevent adverse outcomes in the mother and the newborn.This study assessed the prevalence of induction of labor and determinants of its use in Africa. Methods We performed secondary analysis of the WHO Global Survey of Maternal and Newborn Health of 2004 and 2005. The African database was analyzed to determine the use of induction of labor at the country level and indications for induction of labor. The un-met needs for specific obstetric indications and at country level were assessed. Determinants of use of induction of labor were explored with multivariate regression analysis. Results A total of 83,437 deliveries were recorded in the 7 participating countries. Average rate of induction was 4.4% with a range of 1.4 – 6.8%. Pre-labor rupture of membranes was the commonest indication for induction of labor. Two groups of women were identified: 2,776 women with indications had induction of labor while 7,996 women although had indications but labor was not induced. Induction of labor was associated with reduction of stillbirths and perinatal deaths [OR – 0.34; 95% CI (0.27 – 0.43)]. Unmet need for induction of labor ranged between 66.0% and 80.2% across countries. Determinants of having an induction of labor were place of residence, duration of schooling, type of health facility and level of antenatal care. Conclusion Utilization of induction of labor in health facilities in Africa is very low. Improvements in social and health infrastructure are required to reverse the high unmet need for induction of labor. PMID:22938026

Aftercare Services for Child Victims of Sex Trafficking: A Systematic Review of Policy and Practice.

PubMed

Muraya, Dorothy Neriah; Fry, Deborah

2016-04-01

To explore aftercare services provided to child victims of sex trafficking globally based on the results of a systematic review of published and unpublished research, organizational policy, and current practice. This systematic review serves as a first step toward developing best practices for aftercare service providers. A systematic search was conducted of four English language databases, two human trafficking resource libraries, and one Internet search engine for journal articles and "grey" literature published between January 2000 and May 2013 on the services offered to child sex trafficking victims globally. The search yielded 15 documents for inclusion in the review. The 15 documents emphasized the need for aftercare service provision to be founded on children's rights and trauma-informed service provision. They recommended delivery practices such as case management and multidisciplinary, multiagency and multinational coordination to ensure the child victims benefit fully from the services. The systematic review revealed that there are three phases to aftercare service provision: rescue, recover, and reintegration. Each of these phases is characterized by different needs and types of services provided. The recovery phase received the most attention compared to recovery and reintegration phases. The literature highlighted that aftercare service provision for child sex trafficking victims is a new area that needs an evidence base from which policy and practice can be formed. There is great need for further research and better documentation of service provision. While this research provides insight into this area, the gap in literature remains wide. The area of aftercare service provision for children who have been trafficked has experienced phenomenal growth within the last 10 years, and with more research and resources being directed to the area, the achievement of international minimum standards of care provision is possible. © The Author(s) 2015.

Effective Materials Property Information Management for the 21st Century

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren, Weiju; Cebon, David; Barabash, Oleg M

2011-01-01

This paper discusses key principles for the development of materials property information management software systems. There are growing needs for automated materials information management in various organizations. In part these are fuelled by the demands for higher efficiency in material testing, product design and engineering analysis. But equally important, organizations are being driven by the needs for consistency, quality and traceability of data, as well as control of access to proprietary or sensitive information. Further, the use of increasingly sophisticated nonlinear, anisotropic and multi-scale engineering analyses requires both processing of large volumes of test data for development of constitutive modelsmore » and complex materials data input for Computer-Aided Engineering (CAE) software. And finally, the globalization of economy often generates great needs for sharing a single gold source of materials information between members of global engineering teams in extended supply-chains. Fortunately material property management systems have kept pace with the growing user demands and evolved to versatile data management systems that can be customized to specific user needs. The more sophisticated of these provide facilities for: (i) data management functions such as access, version, and quality controls; (ii) a wide range of data import, export and analysis capabilities; (iii) data pedigree traceability mechanisms; (iv) data searching, reporting and viewing tools; and (v) access to the information via a wide range of interfaces. In this paper the important requirements for advanced material data management systems, future challenges and opportunities such as automated error checking, data quality characterization, identification of gaps in datasets, as well as functionalities and business models to fuel database growth and maintenance are discussed.« less

Mars Global Digital Dune Database; MC-1

USGS Publications Warehouse

Hayward, R.K.; Fenton, L.K.; Tanaka, K.L.; Titus, T.N.; Colaprete, A.; Christensen, P.R.

2010-01-01

The Mars Global Digital Dune Database presents data and describes the methodology used in creating the global database of moderate- to large-size dune fields on Mars. The database is being released in a series of U.S. Geological Survey (USGS) Open-File Reports. The first release (Hayward and others, 2007) included dune fields from 65 degrees N to 65 degrees S (http://pubs.usgs.gov/of/2007/1158/). The current release encompasses ~ 845,000 km2 of mapped dune fields from 65 degrees N to 90 degrees N latitude. Dune fields between 65 degrees S and 90 degrees S will be released in a future USGS Open-File Report. Although we have attempted to include all dune fields, some have likely been excluded for two reasons: (1) incomplete THEMIS IR (daytime) coverage may have caused us to exclude some moderate- to large-size dune fields or (2) resolution of THEMIS IR coverage (100m/pixel) certainly caused us to exclude smaller dune fields. The smallest dune fields in the database are ~ 1 km2 in area. While the moderate to large dune fields are likely to constitute the largest compilation of sediment on the planet, smaller stores of sediment of dunes are likely to be found elsewhere via higher resolution data. Thus, it should be noted that our database excludes all small dune fields and some moderate to large dune fields as well. Therefore, the absence of mapped dune fields does not mean that such dune fields do not exist and is not intended to imply a lack of saltating sand in other areas. Where availability and quality of THEMIS visible (VIS), Mars Orbiter Camera narrow angle (MOC NA), or Mars Reconnaissance Orbiter (MRO) Context Camera (CTX) images allowed, we classified dunes and included some dune slipface measurements, which were derived from gross dune morphology and represent the prevailing wind direction at the last time of significant dune modification. It was beyond the scope of this report to look at the detail needed to discern subtle dune modification. It was also beyond the scope of this report to measure all slipfaces. We attempted to include enough slipface measurements to represent the general circulation (as implied by gross dune morphology) and to give a sense of the complex nature of aeolian activity on Mars. The absence of slipface measurements in a given direction should not be taken as evidence that winds in that direction did not occur. When a dune field was located within a crater, the azimuth from crater centroid to dune field centroid was calculated, as another possible indicator of wind direction. Output from a general circulation model (GCM) is also included. In addition to polygons locating dune fields, the database includes THEMIS visible (VIS) and Mars Orbiter Camera Narrow Angle (MOC NA) images that were used to build the database. The database is presented in a variety of formats. It is presented as an ArcReader project which can be opened using the free ArcReader software. The latest version of ArcReader can be downloaded at http://www.esri.com/software/arcgis/arcreader/download.html. The database is also presented in an ArcMap project. The ArcMap project allows fuller use of the data, but requires ESRI ArcMap(Registered) software. A fuller description of the projects can be found in the NP_Dunes_ReadMe file (NP_Dunes_ReadMe folder_ and the NP_Dunes_ReadMe_GIS file (NP_Documentation folder). For users who prefer to create their own projects, the data are available in ESRI shapefile and geodatabase formats, as well as the open Geography Markup Language (GML) format. A printable map of the dunes and craters in the database is available as a Portable Document Format (PDF) document. The map is also included as a JPEG file. (NP_Documentation folder) Documentation files are available in PDF and ASCII (.txt) files. Tables are available in both Excel and ASCII (.txt)

Comparison of GFED3, QFED2 and FEER1 Biomass Burning Emissions Datasets in a Global Model

NASA Technical Reports Server (NTRS)

Pan, Xiaohua; Ichoku, Charles; Bian, Huisheng; Chin, Mian; Ellison, Luke; da Silva, Arlindo; Darmenov, Anton

2015-01-01

Biomass burning contributes about 40% of the global loading of carbonaceous aerosols, significantly affecting air quality and the climate system by modulating solar radiation and cloud properties. However, fire emissions are poorly constrained in models on global and regional levels. In this study, we investigate 3 global biomass burning emission datasets in NASA GEOS5, namely: (1) GFEDv3.1 (Global Fire Emissions Database version 3.1); (2) QFEDv2.4 (Quick Fire Emissions Dataset version 2.4); (3) FEERv1 (Fire Energetics and Emissions Research version 1.0). The simulated aerosol optical depth (AOD), absorption AOD (AAOD), angstrom exponent and surface concentrations of aerosol plumes dominated by fire emissions are evaluated and compared to MODIS, OMI, AERONET, and IMPROVE data over different regions. In general, the spatial patterns of biomass burning emissions from these inventories are similar, although the strength of the emissions can be noticeably different. The emissions estimates from QFED are generally larger than those of FEER, which are in turn larger than those of GFED. AOD simulated with all these 3 databases are lower than the corresponding observations in Southern Africa and South America, two of the major biomass burning regions in the world.

The Use of Milrinone in Patients with Delayed Cerebral Ischemia Following Subarachnoid Hemorrhage: A Systematic Review.

PubMed

Lannes, Marcelo; Zeiler, Frederick; Guichon, Céline; Teitelbaum, Jeanne

2017-03-01

The purpose of this article is to provide a systematic review of the evidence supporting the use of milrinone for the management of delayed cerebral ischemia (DCI) following subarachnoid hemorrhage (SAH). Primary outcomes were functional neurological status and the incidence of cerebral infarction. Search strategies adapted to the different databases were developed by a professional librarian. Medline, EMBASE, the Cochrane Library database, Web of Science, SCOPUS, BIOSIS, Global Health, Health Star, Open SIGLE, Google Scholar and the New York Academy of Medicine Gray Literature were searched as well as clinical trials databases and the proceedings of several scientific meetings. Quality of the evidence for these outcomes across studies was adjudicated using the GRADE Working Group criteria. The search resulted in 284 citations after elimination of duplicates. Of those 9 conference proceedings and 15 studies met inclusion criteria and consisted of case reports, case series and two comparative studies: one non-randomized study with physiological outcomes only and a case series with historical controls. There was considerable variation in dosing and in co-interventions and no case control or randomized controlled studies were found. There is currently only very low quality evidence to support the use of milrinone to improve important outcomes in patients with delayed cerebral ischemia secondary to subarachnoid hemorrhage. Further research is needed to clarify the value and risks of this medication in patients with SAH.

EarthChem and SESAR: Data Resources and Interoperability for EarthScope Cyberinfrastructure

NASA Astrophysics Data System (ADS)

Lehnert, K. A.; Walker, D.; Block, K.; Vinay, S.; Ash, J.

2008-12-01

Data management within the EarthScope Cyberinfrastructure needs to pursue two goals in order to advance and maximize the broad scientific application and impact of the large volumes of observational data acquired by EarthScope facilities: (a) to provide access to all data acquired by EarthScope facilities, and to promote their use by broad audiences, and (b) to facilitate discovery of, access to, and integration of multi-disciplinary data sets that complement EarthScope data in support of EarthScope science. EarthChem and SESAR, the System for Earth Sample Registration, are two projects within the Geoinformatics for Geochemistry program that offer resources for EarthScope CI. EarthChem operates a data portal that currently provides access to >13 million analytical values for >600,000 samples, more than half of which are from North America, including data from the USGS and all data from the NAVDAT database, a web-accessible repository for age, chemical and isotopic data from Mesozoic and younger igneous rocks in western North America. The new EarthChem GEOCHRON database will house data collected in association with GeoEarthScope, storing and serving geochronological data submitted by participating facilities. The EarthChem Deep Lithosphere Dataset is a compilation of petrological data for mantle xenoliths, initiated in collaboration with GeoFrame to complement geophysical endeavors within EarthScope science. The EarthChem Geochemical Resource Library provides a home for geochemical and petrological data products and data sets. Parts of the digital data in EarthScope CI refer to physical samples such as drill cores, igneous rocks, or water and gas samples, collected, for example, by SAFOD or by EarthScope science projects and acquired through lab-based analysis. Management of sample-based data requires the use of global unique identifiers for samples, so that distributed data for individual samples generated in different labs and published in different papers can be unambiguously linked and integrated. SESAR operates a registry for Earth samples that assigns and administers the International GeoSample Numbers (IGSN) as a global unique identifier for samples. Registration of EarthScope samples with SESAR and use of the IGSN will ensure their unique identification in publications and data systems, thus facilitating interoperability among sample-based data relevant to EarthScope CI and globally. It will also make these samples visible to global audiences via the SESAR Global Sample Catalog.

Rainfall statistics, stationarity, and climate change.

PubMed

Sun, Fubao; Roderick, Michael L; Farquhar, Graham D

2018-03-06

There is a growing research interest in the detection of changes in hydrologic and climatic time series. Stationarity can be assessed using the autocorrelation function, but this is not yet common practice in hydrology and climate. Here, we use a global land-based gridded annual precipitation (hereafter P ) database (1940-2009) and find that the lag 1 autocorrelation coefficient is statistically significant at around 14% of the global land surface, implying nonstationary behavior (90% confidence). In contrast, around 76% of the global land surface shows little or no change, implying stationary behavior. We use these results to assess change in the observed P over the most recent decade of the database. We find that the changes for most (84%) grid boxes are within the plausible bounds of no significant change at the 90% CI. The results emphasize the importance of adequately accounting for natural variability when assessing change. Copyright © 2018 the Author(s). Published by PNAS.

Rainfall statistics, stationarity, and climate change

NASA Astrophysics Data System (ADS)

Sun, Fubao; Roderick, Michael L.; Farquhar, Graham D.

2018-03-01

There is a growing research interest in the detection of changes in hydrologic and climatic time series. Stationarity can be assessed using the autocorrelation function, but this is not yet common practice in hydrology and climate. Here, we use a global land-based gridded annual precipitation (hereafter P) database (1940–2009) and find that the lag 1 autocorrelation coefficient is statistically significant at around 14% of the global land surface, implying nonstationary behavior (90% confidence). In contrast, around 76% of the global land surface shows little or no change, implying stationary behavior. We use these results to assess change in the observed P over the most recent decade of the database. We find that the changes for most (84%) grid boxes are within the plausible bounds of no significant change at the 90% CI. The results emphasize the importance of adequately accounting for natural variability when assessing change.

School Characteristics Influencing the Implementation of a Data-Based Decision Making Intervention

ERIC Educational Resources Information Center

van Geel, Marieke; Visscher, Adrie J.; Teunis, Bernard

2017-01-01

There is an increasing global emphasis on using data for decision making, with a growing body of research on interventions aimed at implementing and sustaining data-based decision making (DBDM) in schools. Yet, little is known about the school features that facilitate or hinder the implementation of DBDM. Based on a literature review, the authors…

Design, Development, and Maintenance of the GLOBE Program Website and Database

NASA Technical Reports Server (NTRS)

Brummer, Renate; Matsumoto, Clifford

2004-01-01

This is a 1-year (Fy 03) proposal to design and develop enhancements, implement improved efficiency and reliability, and provide responsive maintenance for the operational GLOBE (Global Learning and Observations to Benefit the Environment) Program website and database. This proposal is renewable, with a 5% annual inflation factor providing an approximate cost for the out years.

Databases: Beyond the Basics.

ERIC Educational Resources Information Center

Whittaker, Robert

This presented paper offers an elementary description of database characteristics and then provides a survey of databases that may be useful to the teacher and researcher in Slavic and East European languages and literatures. The survey focuses on commercial databases that are available, usable, and needed. Individual databases discussed include:…

Tropospheric Ozone Assessment Report: Database and Metrics Data of Global Surface Ozone Observations

DOE PAGES

Schultz, Martin G.; Schroder, Sabine; Lyapina, Olga; ...

2017-11-27

In support of the first Tropospheric Ozone Assessment Report (TOAR) a relational database of global surface ozone observations has been developed and populated with hourly measurement data and enhanced metadata. A comprehensive suite of ozone data products including standard statistics, health and vegetation impact metrics, and trend information, are made available through a common data portal and a web interface. These data form the basis of the TOAR analyses focusing on human health, vegetation, and climate relevant ozone issues, which are part of this special feature. Cooperation among many data centers and individual researchers worldwide made it possible to buildmore » the world's largest collection of in-situ hourly surface ozone data covering the period from 1970 to 2015. By combining the data from almost 10,000 measurement sites around the world with global metadata information, new analyses of surface ozone have become possible, such as the first globally consistent characterisations of measurement sites as either urban or rural/remote. Exploitation of these global metadata allows for new insights into the global distribution, and seasonal and long-term changes of tropospheric ozone and they enable TOAR to perform the first, globally consistent analysis of present-day ozone concentrations and recent ozone changes with relevance to health, agriculture, and climate. Considerable effort was made to harmonize and synthesize data formats and metadata information from various networks and individual data submissions. Extensive quality control was applied to identify questionable and erroneous data, including changes in apparent instrument offsets or calibrations. Such data were excluded from TOAR data products. Limitations of a posteriori data quality assurance are discussed. As a result of the work presented here, global coverage of surface ozone data for scientific analysis has been significantly extended. Yet, large gaps remain in the surface observation network both in terms of regions without monitoring, and in terms of regions that have monitoring programs but no public access to the data archive. Therefore future improvements to the database will require not only improved data harmonization, but also expanded data sharing and increased monitoring in data-sparse regions.« less

Tropospheric Ozone Assessment Report: Database and Metrics Data of Global Surface Ozone Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schultz, Martin G.; Schroder, Sabine; Lyapina, Olga

In support of the first Tropospheric Ozone Assessment Report (TOAR) a relational database of global surface ozone observations has been developed and populated with hourly measurement data and enhanced metadata. A comprehensive suite of ozone data products including standard statistics, health and vegetation impact metrics, and trend information, are made available through a common data portal and a web interface. These data form the basis of the TOAR analyses focusing on human health, vegetation, and climate relevant ozone issues, which are part of this special feature. Cooperation among many data centers and individual researchers worldwide made it possible to buildmore » the world's largest collection of in-situ hourly surface ozone data covering the period from 1970 to 2015. By combining the data from almost 10,000 measurement sites around the world with global metadata information, new analyses of surface ozone have become possible, such as the first globally consistent characterisations of measurement sites as either urban or rural/remote. Exploitation of these global metadata allows for new insights into the global distribution, and seasonal and long-term changes of tropospheric ozone and they enable TOAR to perform the first, globally consistent analysis of present-day ozone concentrations and recent ozone changes with relevance to health, agriculture, and climate. Considerable effort was made to harmonize and synthesize data formats and metadata information from various networks and individual data submissions. Extensive quality control was applied to identify questionable and erroneous data, including changes in apparent instrument offsets or calibrations. Such data were excluded from TOAR data products. Limitations of a posteriori data quality assurance are discussed. As a result of the work presented here, global coverage of surface ozone data for scientific analysis has been significantly extended. Yet, large gaps remain in the surface observation network both in terms of regions without monitoring, and in terms of regions that have monitoring programs but no public access to the data archive. Therefore future improvements to the database will require not only improved data harmonization, but also expanded data sharing and increased monitoring in data-sparse regions.« less

The global intellectual property ecosystem for insulin and its public health implications: an observational study.

PubMed

Kaplan, Warren A; Beall, Reed F

2017-01-01

Lack of access to insulin and poor health outcomes are issues for both low and high income countries. This has been accompanied by a shift from relatively inexpensive human insulin to its more expensive analogs, marketed by three to four main global players. Nonetheless, patent-based market exclusivities are beginning to expire there for the first generation insulin analogs. This paper adds a global dimension to information on the U.S. patent landscape for insulin by reviewing the patent status of insulins with emphasis on the situation outside the US and Europe. Using the term "insulin", we searched for patents listed on the United States Food and Drug Administration's (USFDA) Orange Book and the Canadian Online Drug Product Database Online Query and its Patent Register. With this information, we expanded the search globally using the World Intellectual Property Organization (WIPO) PatentScope database, the European Patent Office's INPADOC database and various country-specific Patent Offices. Patent protected insulins marketed in the U.S. and other countries are facing an imminent patent-expiration "cliff' yet the three companies that dominate the global insulin market are continuing to file for patents in and outside the U.S, but very rarely in Africa. Only a few local producers in the so-called "pharmerging" markets (e.g., Brazil, India, China) are filing for global patent protection on their own insulins. There is moderate, but statistically significant association between patent filings and diabetes disease burden. The global market dominance by a few companies of analog over human insulin will likely continue even though patents on the current portfolio of insulin analogs will expire very soon. Multinationals are continuing to file for more insulin patents in the bigger markets with large disease burdens and a rapidly emerging middle class. Off-patent human insulins can effectively manage diabetes. A practical way forward would be find (potential) generic manufacturers globally and nudge them towards opportunities to diversify their national insulin markets with acceptable off-patent products for export.

Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments.

PubMed

Daily, Jeff

2016-02-10

Sequence alignment algorithms are a key component of many bioinformatics applications. Though various fast Smith-Waterman local sequence alignment implementations have been developed for x86 CPUs, most are embedded into larger database search tools. In addition, fast implementations of Needleman-Wunsch global sequence alignment and its semi-global variants are not as widespread. This article presents the first software library for local, global, and semi-global pairwise intra-sequence alignments and improves the performance of previous intra-sequence implementations. A faster intra-sequence local pairwise alignment implementation is described and benchmarked, including new global and semi-global variants. Using a 375 residue query sequence a speed of 136 billion cell updates per second (GCUPS) was achieved on a dual Intel Xeon E5-2670 24-core processor system, the highest reported for an implementation based on Farrar's 'striped' approach. Rognes's SWIPE optimal database search application is still generally the fastest available at 1.2 to at best 2.4 times faster than Parasail for sequences shorter than 500 amino acids. However, Parasail was faster for longer sequences. For global alignments, Parasail's prefix scan implementation is generally the fastest, faster even than Farrar's 'striped' approach, however the opal library is faster for single-threaded applications. The software library is designed for 64 bit Linux, OS X, or Windows on processors with SSE2, SSE41, or AVX2. Source code is available from https://github.com/jeffdaily/parasail under the Battelle BSD-style license. Applications that require optimal alignment scores could benefit from the improved performance. For the first time, SIMD global, semi-global, and local alignments are available in a stand-alone C library.

Using greenhouse gas fluxes to define soil functional types

DOE Office of Scientific and Technical Information (OSTI.GOV)

Petrakis, Sandra; Barba, Josep; Bond-Lamberty, Ben

Soils provide key ecosystem services and directly control ecosystem functions; thus, there is a need to define the reference state of soil functionality. Most common functional classifications of ecosystems are vegetation-centered and neglect soil characteristics and processes. We propose Soil Functional Types (SFTs) as a conceptual approach to represent and describe the functionality of soils based on characteristics of their greenhouse gas (GHG) flux dynamics. We used automated measurements of CO2, CH4 and N2O in a forested area to define SFTs following a simple statistical framework. This study supports the hypothesis that SFTs provide additional insights on the spatial variabilitymore » of soil functionality beyond information represented by commonly measured soil parameters (e.g., soil moisture, soil temperature, litter biomass). We discuss the implications of this framework at the plot-scale and the potential of this approach at larger scales. This approach is a first step to provide a framework to define SFTs, but a community effort is necessary to harmonize any global classification for soil functionality. A global application of the proposed SFT framework will only be possible if there is a community-wide effort to share data and create a global database of GHG emissions from soils.« less

PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance

PubMed Central

Nadon, Celine; Van Walle, Ivo; Gerner-Smidt, Peter; Campos, Josefina; Chinen, Isabel; Concepcion-Acevedo, Jeniffer; Gilpin, Brent; Smith, Anthony M.; Kam, Kai Man; Perez, Enrique; Trees, Eija; Kubota, Kristy; Takkinen, Johanna; Nielsen, Eva Møller; Carleton, Heather

2017-01-01

PulseNet International is a global network dedicated to laboratory-based surveillance for food-borne diseases. The network comprises the national and regional laboratory networks of Africa, Asia Pacific, Canada, Europe, Latin America and the Caribbean, the Middle East, and the United States. The PulseNet International vision is the standardised use of whole genome sequencing (WGS) to identify and subtype food-borne bacterial pathogens worldwide, replacing traditional methods to strengthen preparedness and response, reduce global social and economic disease burden, and save lives. To meet the needs of real-time surveillance, the PulseNet International network will standardise subtyping via WGS using whole genome multilocus sequence typing (wgMLST), which delivers sufficiently high resolution and epidemiological concordance, plus unambiguous nomenclature for the purposes of surveillance. Standardised protocols, validation studies, quality control programmes, database and nomenclature development, and training should support the implementation and decentralisation of WGS. Ideally, WGS data collected for surveillance purposes should be publicly available, in real time where possible, respecting data protection policies. WGS data are suitable for surveillance and outbreak purposes and for answering scientific questions pertaining to source attribution, antimicrobial resistance, transmission patterns, and virulence, which will further enable the protection and improvement of public health with respect to food-borne disease. PMID:28662764

Tree cover in Central Africa: determinants and sensitivity under contrasted scenarios of global change

PubMed Central

Aleman, Julie C.; Blarquez, Olivier; Gourlet-Fleury, Sylvie; Bremond, Laurent; Favier, Charly

2017-01-01

Tree cover is a key variable for ecosystem functioning, and is widely used to study tropical ecosystems. But its determinants and their relative importance are still a matter of debate, especially because most regional and global analyses have not considered the influence of agricultural practices. More information is urgently needed regarding how human practices influence vegetation structure. Here we focused in Central Africa, a region still subjected to traditional agricultural practices with a clear vegetation gradient. Using remote sensing data and global databases, we calibrated a Random Forest model to correlatively link tree cover with climatic, edaphic, fire and agricultural practices data. We showed that annual rainfall and accumulated water deficit were the main drivers of the distribution of tree cover and vegetation classes (defined by the modes of tree cover density), but agricultural practices, especially pastoralism, were also important in determining tree cover. We simulated future tree cover with our model using different scenarios of climate and land-use (agriculture and population) changes. Our simulations suggest that tree cover may respond differently regarding the type of scenarios, but land-use change was an important driver of vegetation change even able to counterbalance the effect of climate change in Central Africa. PMID:28134259

Maternity Leave Length and Workplace Policies' Impact on the Sustainment of Breastfeeding: Global Perspectives.

PubMed

Steurer, Lisa M

2017-05-01

Breastfeeding is a global initiative of the World Health Organization and the U.S. domestic health agenda, Healthy People 2020; both recommend exclusive breastfeeding, defined as providing breast milk only via breast or bottle, through the first 6 months of an infant's life. Previous literature has shown the correlation between socioeconomic status and breastfeeding, with higher maternal education and income as predictors of sustained breastfeeding. This same population of women is more likely to be employed outside the home. PubMed and the Cochrane Database of Systematic Reviews were searched using inclusion and exclusion criteria to identify the effect of maternity leave length and workplace policies on the sustainment of breastfeeding for employed mothers. Common facilitators to sustainment of breastfeeding included longer length of maternity leave as well as adequate time and space for the pumping of breast milk once the mother returned to the workplace. Barriers included inconsistency in policy and the lack of enforcement of policies in different countries. There is a lack of consistency globally on maternity leave length and workplace policy as determinants of sustained breastfeeding for employed mothers. A consistent approach is needed to achieve the goal of exclusive breastfeeding for infants. © 2017 Wiley Periodicals, Inc.

Description of the University of Auckland Global Mars Mesoscale Meteorological Model (GM4)

NASA Astrophysics Data System (ADS)

Wing, D. R.; Austin, G. L.

2005-08-01

The University of Auckland Global Mars Mesoscale Meteorological Model (GM4) is a numerical weather prediction model of the Martian atmosphere that has been developed through the conversion of the Penn State University / National Center for Atmospheric Research fifth generation mesoscale model (MM5). The global aspect of this model is self consistent, overlapping, and forms a continuous domain around the entire planet, removing the need to provide boundary conditions other than at initialisation, yielding independence from the constraint of a Mars general circulation model. The brief overview of the model will be given, outlining the key physical processes and setup of the model. Comparison between data collected from Mars Pathfinder during its 1997 mission and simulated conditions using GM4 have been performed. Diurnal temperature variation as predicted by the model shows very good correspondence with the surface truth data, to within 5 K for the majority of the diurnal cycle. Mars Viking Data is also compared with the model, with good agreement. As a further means of validation for the model, various seasonal comparisons of surface and vertical atmospheric structure are conducted with the European Space Agency AOPP/LMD Mars Climate Database. Selected simulations over regions of interest will also be presented.

Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread.

PubMed

Toussaint, A; Charpin, N; Brosse, S; Villéger, S

2016-03-16

Worldwide biodiversity assessments have mainly focused on species richness but little is known about the diversity of species roles, i.e. functional diversity, while this is a key facet to understanding the consequences of global changes on the ecosystem services to human societies. Here, we report the world pattern of functional diversity of freshwater fish using a database encompassing morphological characteristics of more than 9,000 species. The Neotropical realm hosts more than 75% of global functional diversity while other realms each host less than 25%. This discrepancy is mediated by high functional uniqueness in some diversified Neotropical fish orders. Surprisingly, functional diversity patterns were weakly related to functional vulnerability. In the Neotropics the loss of threatened species will cause a limited loss of functional diversity (<10%) whereas in the Nearctic and Palearctic realms, decline of the functional diversity will reach 43% and 33%, respectively, conferring a high functional vulnerability to these realms. Conservation of the Neotropical fish diversity is a key target to maintain world fish functional diversity, but this should not hide the pressing need to conserve the vulnerable fish faunas of the rest of the world, in which functional diversity is to a large extent supported by threatened species.

Do We Produce Enough Fruits and Vegetables to Meet Global Health Need?

PubMed Central

Siegel, Karen R.; Ali, Mohammed K.; Srinivasiah, Adithi; Nugent, Rachel A.; Narayan, K. M. Venkat

2014-01-01

Background Low fruit and vegetable (FV) intake is a leading risk factor for chronic disease globally, but much of the world’s population does not consume the recommended servings of FV daily. It remains unknown whether global supply of FV is sufficient to meet current and growing population needs. We sought to determine whether supply of FV is sufficient to meet current and growing population needs, globally and in individual countries. Methods and Findings We used global data on agricultural production and population size to compare supply of FV in 2009 with population need, globally and in individual countries. We found that the global supply of FV falls, on average, 22% short of population need according to nutrition recommendations (supply:need ratio: 0.78 [Range: 0.05–2.01]). This ratio varies widely by country income level, with a median supply:need ratio of 0.42 and 1.02 in low-income and high-income countries, respectively. A sensitivity analysis accounting for need-side food wastage showed similar insufficiency, to a slightly greater extent (global supply:need ratio: 0.66, varying from 0.37 [low-income countries] to 0.77 [high-income countries]). Using agricultural production and population projections, we also estimated supply and need for FV for 2025 and 2050. Assuming medium fertility and projected growth in agricultural production, the global supply:need ratio for FV increases slightly to 0.81 by 2025 and to 0.88 by 2050, with similar patterns seen across country income levels. In a sensitivity analysis assuming no change from current levels of FV production, the global supply:need ratio for FV decreases to 0.66 by 2025 and to 0.57 by 2050. Conclusion The global nutrition and agricultural communities need to find innovative ways to increase FV production and consumption to meet population health needs, particularly in low-income countries. PMID:25099121

Impact factor and other indices to assess science, scientists and scientific journals.

PubMed

Satyanarayana, K

2010-01-01

This paper traces the evolution of measures and parameters for the evaluation of science and scientific journals from the first attempts during the early part of the last century to the development of the most popular, current and widely used metrics viz., citations, impact factor (IF) etc. The identification of measures of evaluation in science and scientific reporting paralled the post-war increase in funding in the United States of America. Biomedical and medical sciences continue to garner a major share, estimated to be almost two-thirds of total research and development funding of over US$ 350 billion. There has been a concomitant growth in the publications in learned journals. About 1.4 million papers are published every year in an estimated 20,000 journals. In India there are an estimated 100 journals in medical sciences. With a steady increase of about 10% every year, the competition for grants, awards, rewards etc., is fierce. This unrelenting increase in number of scientists and the resultant competition, the limitation of peer review was felt. A search was on for new quantifiable measures for informed decision making for funding, awards, rewards, etc. Now virtually all major decisions all over the world are based on some data linked to publications and/or citations. The concept of citations as tool for 'evaluating' science was first proposed by Eugene Garfield in 1955. The availability of Science Citation Index (SCI), Journal Citation Reports (JCR), Web of Science etc. and the relative ease with which they could be used (and abused) has spawned an entirely new area bibliometrics/scientometrics. As only a limited number of journals could be included in the Thomson Reuters (TR) databases (currently numbering about 10500), analyses based on such a limited dataset (also selected in a non-transparent way by the TR) has been widely and severely criticized by both the developed and developing countries. Yet, studies have shown that citation-based data and indicators (warts and all) could still be put to productive use for purposes of evaluation (as scientists just love numbers). There were simultaneous efforts to find alternative indicators using the TR databases, and through other innovative methods. Some of these include Google Scholar, PageRank, H-index, Y-factor, Faculty of 1000, Eigen Factor etc. The advantages and limitations of these indices are discussed. There is a need for a more critical look at these parameters from the Indian perspective to compute/ device/adapt these measures to suit our needs. There are 205 journals under the category Physiology and 201 in the Pharmacology category listed in the JCR. There are four major Indian journals under the category of Physiology and Pharmacology and none of them are listed in the TR databases reflecting the limitation of these databases. Eventually, and in the long run, the quality of our journals needs to be improved as the current era of globalization and web-access provides both a challenge and an oppportunity for the science and scientific journals published from India to get increased global visibility.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xiong, Wei; Balkovic, Juraj; van der Velde, M.

Crop models are increasingly used to assess impacts of climate change/variability and management practices on productivity and environmental performance of alternative cropping systems. Calibration is an important procedure to improve reliability of model simulations, especially for large area applications. However, global-scale crop model calibration has rarely been exercised due to limited data availability and expensive computing cost. Here we present a simple approach to calibrate Environmental Policy Integrated Climate (EPIC) model for a global implementation of rice. We identify four parameters (potential heat unit – PHU, planting density – PD, harvest index – HI, and biomass energy ratio – BER)more » and calibrate them regionally to capture the spatial pattern of reported rice yield in 2000. Model performance is assessed by comparing simulated outputs with independent FAO national data. The comparison demonstrates that the global calibration scheme performs satisfactorily in reproducing the spatial pattern of rice yield, particularly in main rice production areas. Spatial agreement increases substantially when more parameters are selected and calibrated, but with varying efficiencies. Among the parameters, PHU and HI exhibit the highest efficiencies in increasing the spatial agreement. Simulations with different calibration strategies generate a pronounced discrepancy of 5–35% in mean yields across latitude bands, and a small to moderate difference in estimated yield variability and yield changing trend for the period of 1981–2000. Present calibration has little effects in improving simulated yield variability and trends at both regional and global levels, suggesting further works are needed to reproduce temporal variability of reported yields. This study highlights the importance of crop models’ calibration, and presents the possibility of a transparent and consistent up scaling approach for global crop simulations given current availability of global databases of weather, soil, crop calendar, fertilizer and irrigation management information, and reported yield.« less

The multiple meanings of global health governance: a call for conceptual clarity.

PubMed

Lee, Kelley; Kamradt-Scott, Adam

2014-04-28

The term global health governance (GHG) is now widely used, with over one thousand works published in the scholarly literature, almost all since 2002. Amid this rapid growth there is considerable variation in how the term is defined and applied, generating confusion as to the boundaries of the subject, the perceived problems in practice, and the goals to be achieved through institutional reform. This paper is based on the results of a separate scoping study of peer reviewed GHG research from 1990 onwards which undertook keyword searches of public health and social science databases. Additional works, notably books, book chapters and scholarly articles, not currently indexed, were identified through Web of Science citation searches. After removing duplicates, book reviews, commentaries and editorials, we reviewed the remaining 250 scholarly works in terms of how the concept of GHG is applied. More specifically, we identify what is claimed as constituting GHG, how it is problematised, the institutional features of GHG, and what forms and functions are deemed ideal. After examining the broader notion of global governance and increasingly ubiquitous term "global health", the paper identifies three ontological variations in GHG scholarship - the scope of institutional arrangements, strengths and weaknesses of existing institutions, and the ideal form and function of GHG. This has produced three common, yet distinct, meanings of GHG that have emerged - globalisation and health governance, global governance and health, and governance for global health. There is a need to clarify ontological and definitional distinctions in GHG scholarship and practice, and be critically reflexive of their normative underpinnings. This will enable greater precision in describing existing institutional arrangements, as well as serve as a prerequisite for a fuller debate about the desired nature of GHG.

The multiple meanings of global health governance: a call for conceptual clarity

PubMed Central

2014-01-01

Background The term global health governance (GHG) is now widely used, with over one thousand works published in the scholarly literature, almost all since 2002. Amid this rapid growth there is considerable variation in how the term is defined and applied, generating confusion as to the boundaries of the subject, the perceived problems in practice, and the goals to be achieved through institutional reform. Methodology This paper is based on the results of a separate scoping study of peer reviewed GHG research from 1990 onwards which undertook keyword searches of public health and social science databases. Additional works, notably books, book chapters and scholarly articles, not currently indexed, were identified through Web of Science citation searches. After removing duplicates, book reviews, commentaries and editorials, we reviewed the remaining 250 scholarly works in terms of how the concept of GHG is applied. More specifically, we identify what is claimed as constituting GHG, how it is problematised, the institutional features of GHG, and what forms and functions are deemed ideal. Results After examining the broader notion of global governance and increasingly ubiquitous term “global health”, the paper identifies three ontological variations in GHG scholarship - the scope of institutional arrangements, strengths and weaknesses of existing institutions, and the ideal form and function of GHG. This has produced three common, yet distinct, meanings of GHG that have emerged – globalisation and health governance, global governance and health, and governance for global health. Conclusions There is a need to clarify ontological and definitional distinctions in GHG scholarship and practice, and be critically reflexive of their normative underpinnings. This will enable greater precision in describing existing institutional arrangements, as well as serve as a prerequisite for a fuller debate about the desired nature of GHG. PMID:24775919

Measurement of Global Radiation using Photovoltaic Panels

NASA Astrophysics Data System (ADS)

Veroustraete, Frank; Bronders, Jan; Lefevre, Filip; Mensink, Clemens

2014-05-01

The Vito Unit - Environmental and Spatial Aspects (RMA) - for many of its models makes use of global solar radiation. From this viewpoint and also from the notion that this variable is seldom measured or available at the local scale and at high multi-temporal frequencies, it can be stated that many models are fed with low quality estimates of global solar radiation at the local to regional scales. A project was initiated called SUNSPIDER with the following objective. To make use of photovoltaic solar panels to measure solar radiation at the highest spatio-temporal resolution, from the local to the regional scales and from minutes to years. To integrate the measured solar fields in different application fields like, plant systems and agriculture, agro-meteorology and hydrology and last but not least solar energy applications. In Belgium about 250.000 PV installations have been built leading to about 6% electric power supply from photovoltaics on a yearly basis. Last year in June, the supply reached a peak of more than 20% of the total power input on the Belgian grid. A database of Belgian residential solar panel sites will be compiled. The database will serve as an input to an inverted PV model to be able to perform radiation calculations specifically for each of the validated panel sites based on minutely logged power data. Data acquisition for these sites will start each time a site is validated and hence imported in the database. Keywords: Photovoltaic Panels; PV modelling; Global Radiation.

Standardization of XML Database Exchanges and the James Webb Space Telescope Experience

NASA Technical Reports Server (NTRS)

Gal-Edd, Jonathan; Detter, Ryan; Jones, Ron; Fatig, Curtis C.

2007-01-01

Personnel from the National Aeronautics and Space Administration (NASA) James Webb Space Telescope (JWST) Project have been working with various standard communities such the Object Management Group (OMG) and the Consultative Committee for Space Data Systems (CCSDS) to assist in the definition of a common extensible Markup Language (XML) for database exchange format. The CCSDS and OMG standards are intended for the exchange of core command and telemetry information, not for all database information needed to exercise a NASA space mission. The mission-specific database, containing all the information needed for a space mission, is translated from/to the standard using a translator. The standard is meant to provide a system that encompasses 90% of the information needed for command and telemetry processing. This paper will discuss standardization of the XML database exchange format, tools used, and the JWST experience, as well as future work with XML standard groups both commercial and government.

A Sundial-Atlas Precursor to the TIMED Mission: A Quick-Response Global Investigation into Coupled Lower Thermospheric, Ionospheric, and Mesospheric Physics

NASA Technical Reports Server (NTRS)

Szuszczewicz, E. P.

1996-01-01

The SUNDIAL-ATLAS effort was a global-scale investigation which responded to the science priorities of the ITM Panel, the Integrated SPD Strategy Implementation Plan as a whole, and the need for potential cost-saving design criteria for the TIMED mission. The investigation focused on coupling processes in the ionospheric-thermospheric system, taking advantage of the timelines of the ATLAS-1 mission (March 1992), and the global-scale ground-based measurement and modeling activities of the SUNDIAL program. The collaborative SUNDIAL-ATLAS activity was the first opportunity for global measurements of the chemistry, kinetics, and electrodynamics which couple the E-, Fl-, and F2-regions into a single interactive system. As such, the program represented an important first step in studying global issues; and accordingly, was an important proof of concept experiment relevant to the strategic mission plans for the ITM community and the upcoming intermediate class satellite program called TIMED. To meet its projected goals, TIMED must perform a number of critical measurements and execute a number of correlations that were to be tried and tested for the first time in the SUNDIAL-ATLAS investigation. This was designed to include global correlations of thermospheric and ionospheric composition during quiet and disturbed conditions and the co-registration of global-scale ground-based measurements with along-track satellite diagnostics. The SUNDIAL component of the current investigation addressed this need by acquiring, reducing, and analyzing a multi-sensor database that complemented and extended that which was generated in the ATLAS mission (Atmospheric Laboratory for Applications and Science). The SUNDIAL data defined the state and condition of the global-scale ionosphere in the altitude range from 100 km to the F2-peak. These data specified the peak heights and densities of the E-, Fl-, and F2-regions, along with the global distributions of intermediate, descending, and sequential layers which play a critical role in the dynamo region of the lower ionospheric-thermospheric domain. The data were collected by the SUNDIAL network of more than 50 ground-based stations utilizing ionosondes, radars, photometers, Fabry-Perot interferometers, and total electron content measurements. The data were acquired during a three-week period centered on the eight-day ATLAS-1 mission, which provided image and photometric sensing of the altitude distributions of the major and minor ions and neutrals in the ITM system. This report focuses on the scientific contributions of the SUNDIAL component of the overall investigation. Specific findings are described in seven papers (attached) published in the Journal of Geophysical Research.

UK investments in global infectious disease research 1997-2010: a case study.

PubMed

Head, Michael G; Fitchett, Joseph R; Cooke, Mary K; Wurie, Fatima B; Hayward, Andrew C; Atun, Rifat

2013-01-01

Infectious diseases account for 15 million deaths per year worldwide, and disproportionately affect young people, elderly people, and the poorest sections of society. We aimed to describe the investments awarded to UK institutions for infectious disease research. We systematically searched databases and websites for information on research studies from funding institutions and created a comprehensive database of infectious disease research projects for the period 1997-2010. We categorised studies and funding by disease, cross-cutting theme, and by a research and development value chain describing the type of science. Regression analyses were reported with Spearman's rank correlation coefficient to establish the relation between research investment, mortality, and disease burden as measured by disability-adjusted life years (DALYs). We identified 6170 funded studies, with a total research investment of UK£2·6 billion. Studies with a clear global health component represented 35·6% of all funding (£927 million). By disease, HIV received £461 million (17·7%), malaria £346 million (13·3%), tuberculosis £149 million (5·7%), influenza £80 million (3·1%), and hepatitis C £60 million (2·3%). We compared funding with disease burden (DALYs and mortality) to show low levels of investment relative to burden for gastrointestinal infections (£254 million, 9·7%), some neglected tropical diseases (£184 million, 7·1%), and antimicrobial resistance (£96 million, 3·7%). Virology was the highest funded category (£1 billion, 38·4%). Leading funding sources were the Wellcome Trust (£688 million, 26·4%) and the Medical Research Council (£673 million, 25·8%). Research funding has to be aligned with prevailing and projected global infectious disease burden. Funding agencies and industry need to openly document their research investments to redress any inequities in resource allocation. None. Copyright © 2013 Elsevier Ltd. All rights reserved.

Applications of GIS and database technologies to manage a Karst Feature Database

USGS Publications Warehouse

Gao, Y.; Tipping, R.G.; Alexander, E.C.

2006-01-01

This paper describes the management of a Karst Feature Database (KFD) in Minnesota. Two sets of applications in both GIS and Database Management System (DBMS) have been developed for the KFD of Minnesota. These applications were used to manage and to enhance the usability of the KFD. Structured Query Language (SQL) was used to manipulate transactions of the database and to facilitate the functionality of the user interfaces. The Database Administrator (DBA) authorized users with different access permissions to enhance the security of the database. Database consistency and recovery are accomplished by creating data logs and maintaining backups on a regular basis. The working database provides guidelines and management tools for future studies of karst features in Minnesota. The methodology of designing this DBMS is applicable to develop GIS-based databases to analyze and manage geomorphic and hydrologic datasets at both regional and local scales. The short-term goal of this research is to develop a regional KFD for the Upper Mississippi Valley Karst and the long-term goal is to expand this database to manage and study karst features at national and global scales.

Promoting Oral Health and Quality of Life of Older People - The Need for Public Health Action.

PubMed

Petersen, Poul Erik; Ogawa, Hiroshi

2018-01-01

This report intends to review the global burden of oral disease among older people and to examine their oral health needs. The evidence on the inter-relationships between poor oral health conditions of older people, general health and quality of life is highlighted. Finally, WHO strategies to improve oral health of older people are reviewed. The information relevant to this review was extracted from the WHO Global Oral Health Data Bank, the PubMed database, and the Cochrane Library. Surveys were carried out according to the criteria recommended by the WHO epidemiological manual Oral Health Surveys - Basic Methods. In addition, global data were sought on coverage of oral health care among older people. Finally, WHO policy documents on health care for aged people were gathered through the WHO website. Across the globe, many older people suffer from oral pain or discomfort. Poor oral health during old age is mostly manifest in high caries experience, high prevalence rates of advanced periodontal disease, severe tooth loss, dry mouth, and oral pre-cancer/cancer. In both developing and developed countries, the burden of disease is particularly high among underprivileged and disadvantaged older people. In numerous countries, high proportions of the aged population are not covered by primary oral health care; this is mainly the case in low and middle income countries due to a critical shortage of dentists. In 2015, the WHO published the World Report on Ageing and Health, which outlines a framework for action to foster healthy ageing. The policies are highly relevant to the improvement of oral health. Transformation of oral health systems away from a disease-based curative model and towards disease prevention, as well as the provision of older-person-centred integrated care are required. Moreover, wide-ranging public health action on ageing is urgently needed.

Examples of Linking Codes Within GeoFramework

NASA Astrophysics Data System (ADS)

Tan, E.; Choi, E.; Thoutireddy, P.; Aivazis, M.; Lavier, L.; Quenette, S.; Gurnis, M.

2003-12-01

Geological processes usually encompass a broad spectrum of length and time scales. Traditionally, a modeling code (solver) is written to solve a problem with specific length and time scales in mind. The utility of the solver beyond the designated purpose is usually limited. Furthermore, two distinct solvers, even if each can solve complementary parts of a new problem, are difficult to link together to solve the problem as a whole. For example, Lagrangian deformation model with visco-elastoplastic crust is used to study deformation near plate boundary. Ideally, the driving force of the deformation should be derived from underlying mantle convection, and it requires linking the Lagrangian deformation model with a Eulerian mantle convection model. As our understanding of geological processes evolves, the need of integrated modeling codes, which should reuse existing codes as much as possible, begins to surface. GeoFramework project addresses this need by developing a suite of reusable and re-combinable tools for the Earth science community. GeoFramework is based on and extends Pyre, a Python-based modeling framework, recently developed to link solid (Lagrangian) and fluid (Eulerian) models, as well as mesh generators, visualization packages, and databases, with one another for engineering applications. Under the framework, a solver is aware of the existence of other solvers and can interact with each other via exchanging information across adjacent boundary. A solver needs to conform a standard interface and provide its own implementation for exchanging boundary information. The framework also provides facilities to control the coordination between interacting solvers. We will show an example of linking two solvers within GeoFramework. CitcomS is a finite element code which solves for thermal convection within a 3D spherical shell. CitcomS can solve for problems either within a full spherical (global) domain or a restricted (regional) domain of a full sphere by using different meshers. We can embed a regional CitcomS solver within a global CitcomS solver. We not that linking instances of the same solver is conceptually equivalent to linking to different solvers. The global solver has a coarser grid and a longer stable time step than the regional solver. Therefore, a global-solver time step consists of several regional-solver time steps. The time-marching scheme is described below. First, the global solver is advanced one global-solver time step. Then, the regional solver is advanced for several regional-solver time steps until it catches up global solver. Within each regional-solver time step, the velocity field of the global solver is interpolated in time and then is imposed to the regional solver as boundary conditions. Finally, the temperature field of the regional solver is extrapolated in space and is fed back to the global. These two solvers are linked and synchronized by the time-marching scheme. An effort to embed a visco-elastoplastic representation of the crust within viscous mantle flow is underway.

The economic costs of natural disasters globally from 1900-2015: historical and normalised floods, storms, earthquakes, volcanoes, bushfires, drought and other disasters

NASA Astrophysics Data System (ADS)

Daniell, James; Wenzel, Friedemann; Schaefer, Andreas

2016-04-01

For the first time, a breakdown of natural disaster losses from 1900-2015 based on over 30,000 event economic losses globally is given based on increased analysis within the CATDAT Damaging Natural Disaster databases. Using country-CPI and GDP deflator adjustments, over 7 trillion (2015-adjusted) in losses have occurred; over 40% due to flood/rainfall, 26% due to earthquake, 19% due to storm effects, 12% due to drought, 2% due to wildfire and under 1% due to volcano. Using construction cost indices, higher percentages of flood losses are seen. Depending on how the adjustment of dollars are made to 2015 terms (CPI vs. construction cost indices), between 6.5 and 14.0 trillion USD (2015-adjusted) of natural disaster losses have been seen from 1900-2015 globally. Significant reductions in economic losses have been seen in China and Japan from 1950 onwards. An AAL of around 200 billion in the last 16 years has been seen equating to around 0.25% of Global GDP or around 0.1% of Net Capital Stock per year. Normalised losses have also been calculated to examine the trends in vulnerability through time for economic losses. The normalisation methodology globally using the exposure databases within CATDAT that were undertaken previously in papers for the earthquake and volcano databases, are used for this study. The original event year losses are adjusted directly by capital stock change, very high losses are observed with respect to floods over time (however with improved flood control structures). This shows clear trends in the improvement of building stock towards natural disasters and a decreasing trend in most perils for most countries.

Mars Global Digital Dune Database (MGD3): Global dune distribution and wind pattern observations

USGS Publications Warehouse

Hayward, Rosalyn K.; Fenton, Lori; Titus, Timothy N.

2014-01-01

The Mars Global Digital Dune Database (MGD3) is complete and now extends from 90°N to 90°S latitude. The recently released south pole (SP) portion (MC-30) of MGD3 adds ∼60,000 km2 of medium to large-size dark dune fields and ∼15,000 km2 of sand deposits and smaller dune fields to the previously released equatorial (EQ, ∼70,000 km2), and north pole (NP, ∼845,000 km2) portions of the database, bringing the global total to ∼975,000 km2. Nearly all NP dunes are part of large sand seas, while the majority of EQ and SP dune fields are individual dune fields located in craters. Despite the differences between Mars and Earth, their dune and dune field morphologies are strikingly similar. Bullseye dune fields, named for their concentric ring pattern, are the exception, possibly owing their distinctive appearance to winds that are unique to the crater environment. Ground-based wind directions are derived from slipface (SF) orientation and dune centroid azimuth (DCA), a measure of the relative location of a dune field inside a crater. SF and DCA often preserve evidence of different wind directions, suggesting the importance of local, topographically influenced winds. In general however, ground-based wind directions are broadly consistent with expected global patterns, such as polar easterlies. Intriguingly, between 40°S and 80°S latitude both SF and DCA preserve their strongest, though different, dominant wind direction, with transport toward the west and east for SF-derived winds and toward the north and west for DCA-derived winds.

The China Plant Trait Database: toward a comprehensive regional compilation of functional traits for land plants.

PubMed

Wang, Han; Harrison, Sandy P; Prentice, Iain C; Yang, Yanzheng; Bai, Fan; Togashi, Henrique F; Wang, Meng; Zhou, Shuangxi; Ni, Jian

2018-02-01

Plant functional traits provide information about adaptations to climate and environmental conditions, and can be used to explore the existence of alternative plant strategies within ecosystems. Trait data are also increasingly being used to provide parameter estimates for vegetation models. Here we present a new database of plant functional traits from China. Most global climate and vegetation types can be found in China, and thus the database is relevant for global modeling. The China Plant Trait Database contains information on morphometric, physical, chemical, and photosynthetic traits from 122 sites spanning the range from boreal to tropical, and from deserts and steppes through woodlands and forests, including montane vegetation. Data collection at each site was based either on sampling the dominant species or on a stratified sampling of each ecosystem layer. The database contains information on 1,215 unique species, though many species have been sampled at multiple sites. The original field identifications have been taxonomically standardized to the Flora of China. Similarly, derived photosynthetic traits, such as electron-transport and carboxylation capacities, were calculated using a standardized method. To facilitate trait-environment analyses, the database also contains detailed climate and vegetation information for each site. The data set is released under a Creative Commons BY license. When using the data set, we kindly request that you cite this article, recognizing the hard work that went into collecting the data and the authors' willingness to make it publicly available. © 2017 by the Ecological Society of America.

What explains the distribution of doctors and nurses in different countries, and does it matter for health outcomes?

PubMed

Carr-Hill, Roy; Currie, Elizabeth

2013-11-01

To re-examine the form of the relationships between the global distribution of health professionals (physicians and nurses), gross national product per capita, female literacy, and infant and under-5 mortality rates reported in three papers by Robinson and Wharrad using more recent data. The secondary aim was to explore prior assumptions about the quality of the data, the homogeneity of the sample, and the form of the relationship. The analyses by Robinson and Wharrad did not take account of differences between developing and developed countries. Furthermore, the intervening years have seen changes in healthcare professional roles and their global distribution. Re-examination of these relationships is therefore timely. A secondary analysis of routinely collected data from international databases. A database was constructed from Organisation for Economic Co-operation and Development, United Nations and World Bank sources on 177 countries for around 2005. Regression analyses were performed first with number of physicians and of nurses per 1000 population as dependent variables and gross national product per capita, female literacy rates, and the Gini coefficient as independent variables; and second with all those variables as independent variables and infant mortality, under-5 mortality rates, and maternal mortality rates as dependent variables. There were clear and interesting differences between richer (Organisation for Economic Co-operation and Development) countries and developing countries in the coefficients and in the power of the equations. The importance of understanding the implications of carrying out cross-country analysis and the urgent need for standardization of definitions in datasets are emphasized. © 2013 Blackwell Publishing Ltd.

Global geologic applications of the Space Shuttle earth observations photography database

NASA Technical Reports Server (NTRS)

Lulla, Kamlesh; Helfert, Michael; Evans, Cynthia; Wilkinson, M. J.; Pitts, David; Amsbury, David

1993-01-01

The advantages of the astronaut photography during Space Shuttle missions are briefly examined, and the scope and applications of the Space Shuttle earth observations photography database are discussed. The global and multidisciplinary nature of the data base is illustrated by several examples of geologic applications. These include the eruption of Mount Pinatubo (Philippine Islands), heat flow and ice cover on Lake Baikal in Siberia (Russia), and windblown dust in South America. It is noted that hand-held photography from the U.S. Space Shuttle provides unique remotely-sensed data for geologic applications because of the combination of varying perspectives, look angles, and illumination, and changing resolution resulting from different lenses and altitudes.

Global Aerodynamic Modeling for Stall/Upset Recovery Training Using Efficient Piloted Flight Test Techniques

NASA Technical Reports Server (NTRS)

Morelli, Eugene A.; Cunningham, Kevin; Hill, Melissa A.

2013-01-01

Flight test and modeling techniques were developed for efficiently identifying global aerodynamic models that can be used to accurately simulate stall, upset, and recovery on large transport airplanes. The techniques were developed and validated in a high-fidelity fixed-base flight simulator using a wind-tunnel aerodynamic database, realistic sensor characteristics, and a realistic flight deck representative of a large transport aircraft. Results demonstrated that aerodynamic models for stall, upset, and recovery can be identified rapidly and accurately using relatively simple piloted flight test maneuvers. Stall maneuver predictions and comparisons of identified aerodynamic models with data from the underlying simulation aerodynamic database were used to validate the techniques.

Performance analysis of different database in new internet mapping system

NASA Astrophysics Data System (ADS)

Yao, Xing; Su, Wei; Gao, Shuai

2017-03-01

In the Mapping System of New Internet, Massive mapping entries between AID and RID need to be stored, added, updated, and deleted. In order to better deal with the problem when facing a large number of mapping entries update and query request, the Mapping System of New Internet must use high-performance database. In this paper, we focus on the performance of Redis, SQLite, and MySQL these three typical databases, and the results show that the Mapping System based on different databases can adapt to different needs according to the actual situation.

Global Warming and the Greenhouse Effect: January 1986-January 1992. Quick Bibliography Series: QB 92-36.

ERIC Educational Resources Information Center

MacLean, Jayne T.

This bibliography contains 442 journal article, book, and audiovisual citations on global warming and the greenhouse effect entered into the National Agricultural Library's AGRICOLA database between January 1979 and March 1992. The bibliography contains an author and subject index as well as information on obtaining documents. (LZ)

Design research and the globalization of healthcare environments.

PubMed

Shepley, Mardelle McCuskey; Song, Yilin

2014-01-01

Global healthcare practice has expanded in the past 20 years. At the same time the incorporation of research into the design process has gained prominence as a best practice among architects. The authors of this study investigated the status of design research in a variety of international settings. We intended to answer the question, "how pervasive is healthcare design research outside of the United States?" The authors reviewed the international literature on the design of healthcare facilities. More than 500 international studies and conference proceedings were incorporated in this literature review. A team of five research assistants searched multiple databases comparing approximately 16 keywords to geographic location. Some of those keywords included: evidence-based design, salutogenic design, design research, and healthcare environment. Additional articles were gathered by contacting prominent researchers and asking for their personal assessment of local health design research studies. While there are design researchers in most parts of the world, the majority of studies focus on the needs of populations in developed countries and generate guidelines that have significant cost and cultural implications that prohibit their implementation in developing countries. Additionally, the body of literature discussing the role of culture in healthcare environments is extremely limited. Design researchers must address the cultural implications of their studies. Additionally, we need to expand our research objectives to address healthcare design in countries that have not been previous considered. © 2014 Vendome Group, LLC.

Uncovering the hidden impacts of inequality on mental health: a global study.

PubMed

Yu, Shoukai

2018-05-18

Women are nearly twice as likely as men to suffer from mental illness. This gender disparity in depressive disorders may relate to social inequalities and living standards across nations. Currently, these disparities were not reflected at the level of health policies. This study utilized global data for depressive disorders and socioeconomic data from the United Nations' World Bank databases and Global Burden of Disease database to demonstrate the correlation between social inequality and gender disparities in mental health. This study investigated the association among the ratio of female to male depressive disorder rates, gross domestic product, the GINI Index, and the gender inequality index for 122 countries. The research yielded some major findings. First, there exists a significant correlation between gender inequality and gender disparities in mental health. Second, the GINI index is significantly associated with male-but not female-depressive disorder rates. Third, gender disparities in depressive disorders are associated with a country's wealth. These findings can help to inform society, policy-makers, and clinicians to improve the overall health level globally.

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

PubMed

Huan, Tianxiao; Sivachenko, Andrey Y; Harrison, Scott H; Chen, Jake Y

2008-08-12

New systems biology studies require researchers to understand how interplay among myriads of biomolecular entities is orchestrated in order to achieve high-level cellular and physiological functions. Many software tools have been developed in the past decade to help researchers visually navigate large networks of biomolecular interactions with built-in template-based query capabilities. To further advance researchers' ability to interrogate global physiological states of cells through multi-scale visual network explorations, new visualization software tools still need to be developed to empower the analysis. A robust visual data analysis platform driven by database management systems to perform bi-directional data processing-to-visualizations with declarative querying capabilities is needed. We developed ProteoLens as a JAVA-based visual analytic software tool for creating, annotating and exploring multi-scale biological networks. It supports direct database connectivity to either Oracle or PostgreSQL database tables/views, on which SQL statements using both Data Definition Languages (DDL) and Data Manipulation languages (DML) may be specified. The robust query languages embedded directly within the visualization software help users to bring their network data into a visualization context for annotation and exploration. ProteoLens supports graph/network represented data in standard Graph Modeling Language (GML) formats, and this enables interoperation with a wide range of other visual layout tools. The architectural design of ProteoLens enables the de-coupling of complex network data visualization tasks into two distinct phases: 1) creating network data association rules, which are mapping rules between network node IDs or edge IDs and data attributes such as functional annotations, expression levels, scores, synonyms, descriptions etc; 2) applying network data association rules to build the network and perform the visual annotation of graph nodes and edges according to associated data values. We demonstrated the advantages of these new capabilities through three biological network visualization case studies: human disease association network, drug-target interaction network and protein-peptide mapping network. The architectural design of ProteoLens makes it suitable for bioinformatics expert data analysts who are experienced with relational database management to perform large-scale integrated network visual explorations. ProteoLens is a promising visual analytic platform that will facilitate knowledge discoveries in future network and systems biology studies.

Variability of Evaporation and Precipitation over the Ocean from Satellite Data

NASA Astrophysics Data System (ADS)

Malinin, V. N.; Gordeeva, S. M.

2017-12-01

HOAPS-3 and PMWC satellite archives for 1988-2008 are used to estimate moisture-exchange components between the ocean and atmosphere (evaporation, precipitation, and the difference between them or effective evaporation). Moisture-exchange components for the entire World Ocean and for the North Atlantic Ocean within 30°-60° N are calculated. A strong overestimation of the global values of effective evaporation by HOAPS data (mainly caused by a decrease in precipitation) is shown. In the interannual variability of effective evaporation, there is clearly an overestimated positive trend, which contradicts the real increase in the Global Sea Level. Large systematic errors in moisture-exchange components are revealed for the North Atlantic water area. According to HOAPS data, there is a significant underestimation of evaporation and effective evaporation. According to PMWC data, the amount of precipitation is significantly overestimated and evaporation is underestimated. As a consequence, effective evaporation becomes negative, which is impossible. Low accuracy in the estimation of moisture-exchange components and the need to improve old estimates and develop new evaporation and precipitation databases based on satellite data are noted.

MAGA, a new database of gas natural emissions: a collaborative web environment for collecting data.

NASA Astrophysics Data System (ADS)

Cardellini, Carlo; Chiodini, Giovanni; Frigeri, Alessandro; Bagnato, Emanuela; Frondini, Francesco; Aiuppa, Alessandro

2014-05-01

The data on volcanic and non-volcanic gas emissions available online are, as today, are incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various scales. A new and detailed web database (MAGA: MApping GAs emissions) has been developed, and recently improved, to collect data on carbon degassing form volcanic and non-volcanic environments. MAGA database allows researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and with the ingestion in to the database of the data from: i) a literature survey on publications on volcanic gas fluxes including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores, and ii) the revision and update of Googas database on non-volcanic emission of the Italian territory (Chiodini et al., 2008), in the framework of the Deep Earth Carbon Degassing (DECADE) research initiative of the Deep Carbon Observatory (DCO). For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of each site. In this phase data can be accessed on the network from a web interface, and data-driven web service, where software clients can request data directly from the database, are planned to be implemented shortly. This way Geographical Information Systems (GIS) and Virtual Globes (e.g., Google Earth) could easily access the database, and data could be exchanged with other database. At the moment the database includes: i) more than 1000 flux data about volcanic plume degassing from Etna and Stromboli volcanoes, ii) data from ~ 30 sites of diffuse soil degassing from Napoletan volcanoes, Azores, Canary, Etna, Stromboli, and Vulcano Island, several data on fumarolic emissions (~ 7 sites) with CO2 fluxes; iii) data from ~ 270 non volcanic gas emission site in Italy. We believe MAGA data-base is an important starting point to develop a large scale, expandable data-base aimed to excite, inspire, and encourage participation among researchers. In addition, the possibility to archive location and qualitative information for gas emission/sites not yet investigated, could stimulate the scientific community for future researches and will provide an indication on the current uncertainty on deep carbon fluxes global estimates

Holocene = Anthropocene? The HYDE database for integrated global change research over the past 12,000 years

NASA Astrophysics Data System (ADS)

Klein Goldewijk, K.

2008-12-01

More and more studies of global (climate) change are focusing on the past. Hundreds and thousands of years of land use, driven by population growth have left their trace/mark on the Earth's surface. We are only at the beginning to understand the complex relationship of human induced disturbances of the global environment, and the consequences for future climate. It is therefore essential that we get a clear picture/understanding of past relationships between population growth, land use and climate. In order to facilitate climate modelers to examine these relationships, the HYDE database has been updated and extended. The update of HYDE described here (Klein Goldewijk et al. 2006; Klein Goldewijk et al. 2007) includes several improvements compared to its predecessor: (i) the HYDE 2 version used a Boolean approach with a 30 minute degree resolution, while HYDE 3 uses fractional land use on a 5 minute resolution; (ii) more and better sub-national (population) data (Klein Goldewijk, 2005) to improve the historical (urban and rural) population maps as a basis for allocation of land cover; (iii) implementation of different allocation algorithms with time-dependent weighting maps for cropland and grassland; (iv) the period covered has now been extended from the emergence of agriculture (10,000 B.C) to present time (2,000 A.D.), with different time intervals. Examples of (future) use of the database is to help test the 'Ruddiman hypothesis', who proposed a theory that mankind already altered the global atmosphere much earlier than the start of the Industrial Revolution in the early 18th century (Ruddiman, 2003), which put forward the research question whether we detect a pre- Industrial Revolution anthropogenic signal, and how strong is that signal? References Klein Goldewijk, K. A.F. Bouwman and G. van Drecht, 2007. Mapping current global cropland and grassland distributions on a 5 by 5 minute resolution, Journal of Land Use Science, Vol 2(3): 167-190. Klein Goldewijk, K. and G. van Drecht, 2006. HYDE 3: Current and historical population and land cover. MNP (2006) (Edited by A.F. Bouwman, T. Kram and K. Klein Goldewijk), Integrated modelling of global environmental change. An overview of IMAGE 2.4. Netherlands Environmental Assessment Agency (MNP), Bilthoven, The Netherlands Klein Goldewijk, K. 2005. Three centuries of global population growth: A spatial referenced population density database for 1700 - 2000, Population and Environment, 26 (5): 343-367. Ruddiman, WF, 2003. The anthropogenic greenhouse era bagan thousands of years ago, Climatic Change, 61(3), 261-293.

[Academic review of global health approaches: an analytical framework].

PubMed

Franco-Giraldo, Alvaro

2015-09-01

In order to identify perspectives on global health, this essay analyzes different trends from academia that have enriched global health and international health. A database was constructed with information from the world's leading global health centers. The search covered authors on global diplomacy and global health and was performed in PubMed, LILACS, and Google Scholar with the key words "global health" and "international health". Research and training centers in different countries have taken various academic approaches to global health; various interests and ideological orientations have emerged in relation to the global health concept. Based on the mosaic of global health centers and their positions, the review concludes that the new concept reflects the construction of a paradigm of renewal in international health and global health, the pre-paradigmatic stage of which has still not reached a final version.

Needs assessment for next generation computer-aided mammography reference image databases and evaluation studies.

PubMed

Horsch, Alexander; Hapfelmeier, Alexander; Elter, Matthias

2011-11-01

Breast cancer is globally a major threat for women's health. Screening and adequate follow-up can significantly reduce the mortality from breast cancer. Human second reading of screening mammograms can increase breast cancer detection rates, whereas this has not been proven for current computer-aided detection systems as "second reader". Critical factors include the detection accuracy of the systems and the screening experience and training of the radiologist with the system. When assessing the performance of systems and system components, the choice of evaluation methods is particularly critical. Core assets herein are reference image databases and statistical methods. We have analyzed characteristics and usage of the currently largest publicly available mammography database, the Digital Database for Screening Mammography (DDSM) from the University of South Florida, in literature indexed in Medline, IEEE Xplore, SpringerLink, and SPIE, with respect to type of computer-aided diagnosis (CAD) (detection, CADe, or diagnostics, CADx), selection of database subsets, choice of evaluation method, and quality of descriptions. 59 publications presenting 106 evaluation studies met our selection criteria. In 54 studies (50.9%), the selection of test items (cases, images, regions of interest) extracted from the DDSM was not reproducible. Only 2 CADx studies, not any CADe studies, used the entire DDSM. The number of test items varies from 100 to 6000. Different statistical evaluation methods are chosen. Most common are train/test (34.9% of the studies), leave-one-out (23.6%), and N-fold cross-validation (18.9%). Database-related terminology tends to be imprecise or ambiguous, especially regarding the term "case". Overall, both the use of the DDSM as data source for evaluation of mammography CAD systems, and the application of statistical evaluation methods were found highly diverse. Results reported from different studies are therefore hardly comparable. Drawbacks of the DDSM (e.g. varying quality of lesion annotations) may contribute to the reasons. But larger bias seems to be caused by authors' own decisions upon study design. RECOMMENDATIONS/CONCLUSION: For future evaluation studies, we derive a set of 13 recommendations concerning the construction and usage of a test database, as well as the application of statistical evaluation methods.

Kindness in the Art Classroom: Kind Thoughts on Stephen Rowland

ERIC Educational Resources Information Center

Lampert, Nancy

2011-01-01

This article is a response to Stephen Rowland's article, "Kindness," which appeared in "London Review of Education," November 2009. Much to my amazement, Stephen Rowland's article was the only one I found when I did a global database search on "kindness in education". I had thought that I would find reams of information in the databases on the…

The Global Energy Balance Archive (GEBA) version 2017: a database for worldwide measured surface energy fluxes

NASA Astrophysics Data System (ADS)

Wild, Martin; Ohmura, Atsumu; Schär, Christoph; Müller, Guido; Folini, Doris; Schwarz, Matthias; Zyta Hakuba, Maria; Sanchez-Lorenzo, Arturo

2017-08-01

The Global Energy Balance Archive (GEBA) is a database for the central storage of the worldwide measured energy fluxes at the Earth's surface, maintained at ETH Zurich (Switzerland). This paper documents the status of the GEBA version 2017 dataset, presents the new web interface and user access, and reviews the scientific impact that GEBA data had in various applications. GEBA has continuously been expanded and updated and contains in its 2017 version around 500 000 monthly mean entries of various surface energy balance components measured at 2500 locations. The database contains observations from 15 surface energy flux components, with the most widely measured quantity available in GEBA being the shortwave radiation incident at the Earth's surface (global radiation). Many of the historic records extend over several decades. GEBA contains monthly data from a variety of sources, namely from the World Radiation Data Centre (WRDC) in St. Petersburg, from national weather services, from different research networks (BSRN, ARM, SURFRAD), from peer-reviewed publications, project and data reports, and from personal communications. Quality checks are applied to test for gross errors in the dataset. GEBA has played a key role in various research applications, such as in the quantification of the global energy balance, in the discussion of the anomalous atmospheric shortwave absorption, and in the detection of multi-decadal variations in global radiation, known as global dimming and brightening. GEBA is further extensively used for the evaluation of climate models and satellite-derived surface flux products. On a more applied level, GEBA provides the basis for engineering applications in the context of solar power generation, water management, agricultural production and tourism. GEBA is publicly accessible through the internet via http://www.geba.ethz.ch. Supplementary data are available at https://doi.org/10.1594/PANGAEA.873078.

Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus

PubMed Central

Ronnenberg, Kathryn L.; Powell, Christopher I.; Walker, Susan F.; Bielby, Jon; Garner, Trenton W. J.; Weaver, George

2013-01-01

The rapid worldwide emergence of the amphibian pathogen Batrachochytrium dendrobatidis (Bd) is having a profound negative impact on biodiversity. However, global research efforts are fragmented and an overarching synthesis of global infection data is lacking. Here, we provide results from a community tool for the compilation of worldwide Bd presence and report on the analyses of data collated over a four-year period. Using this online database, we analysed: 1) spatial and taxonomic patterns of infection, including amphibian families that appear over- and under-infected; 2) relationships between Bd occurrence and declining amphibian species, including associations among Bd occurrence, species richness, and enigmatic population declines; and 3) patterns of environmental correlates with Bd, including climate metrics for all species combined and three families (Hylidae, Bufonidae, Ranidae) separately, at both a global scale and regional (U.S.A.) scale. These associations provide new insights for downscaled hypothesis testing. The pathogen has been detected in 52 of 82 countries in which sampling was reported, and it has been detected in 516 of 1240 (42%) amphibian species. We show that detected Bd infections are related to amphibian biodiversity and locations experiencing rapid enigmatic declines, supporting the hypothesis that greater complexity of amphibian communities increases the likelihood of emergence of infection and transmission of Bd. Using a global model including all sampled species, the odds of Bd detection decreased with increasing temperature range at a site. Further consideration of temperature range, rather than maximum or minimum temperatures, may provide new insights into Bd-host ecology. Whereas caution is necessary when interpreting such a broad global dataset, the use of our pathogen database is helping to inform studies of the epidemiology of Bd, as well as enabling regional, national, and international prioritization of conservation efforts. We provide recommendations for adaptive management to enhance the database utility and relevance. PMID:23463502

Mapping the global emergence of Batrachochytrium dendrobatidis, the amphibian chytrid fungus.

PubMed

Olson, Deanna H; Aanensen, David M; Ronnenberg, Kathryn L; Powell, Christopher I; Walker, Susan F; Bielby, Jon; Garner, Trenton W J; Weaver, George; Fisher, Matthew C

2013-01-01

The rapid worldwide emergence of the amphibian pathogen Batrachochytrium dendrobatidis (Bd) is having a profound negative impact on biodiversity. However, global research efforts are fragmented and an overarching synthesis of global infection data is lacking. Here, we provide results from a community tool for the compilation of worldwide Bd presence and report on the analyses of data collated over a four-year period. Using this online database, we analysed: 1) spatial and taxonomic patterns of infection, including amphibian families that appear over- and under-infected; 2) relationships between Bd occurrence and declining amphibian species, including associations among Bd occurrence, species richness, and enigmatic population declines; and 3) patterns of environmental correlates with Bd, including climate metrics for all species combined and three families (Hylidae, Bufonidae, Ranidae) separately, at both a global scale and regional (U.S.A.) scale. These associations provide new insights for downscaled hypothesis testing. The pathogen has been detected in 52 of 82 countries in which sampling was reported, and it has been detected in 516 of 1240 (42%) amphibian species. We show that detected Bd infections are related to amphibian biodiversity and locations experiencing rapid enigmatic declines, supporting the hypothesis that greater complexity of amphibian communities increases the likelihood of emergence of infection and transmission of Bd. Using a global model including all sampled species, the odds of Bd detection decreased with increasing temperature range at a site. Further consideration of temperature range, rather than maximum or minimum temperatures, may provide new insights into Bd-host ecology. Whereas caution is necessary when interpreting such a broad global dataset, the use of our pathogen database is helping to inform studies of the epidemiology of Bd, as well as enabling regional, national, and international prioritization of conservation efforts. We provide recommendations for adaptive management to enhance the database utility and relevance.

Neighborhood Structural Similarity Mapping for the Classification of Masses in Mammograms.

PubMed

Rabidas, Rinku; Midya, Abhishek; Chakraborty, Jayasree

2018-05-01

In this paper, two novel feature extraction methods, using neighborhood structural similarity (NSS), are proposed for the characterization of mammographic masses as benign or malignant. Since gray-level distribution of pixels is different in benign and malignant masses, more regular and homogeneous patterns are visible in benign masses compared to malignant masses; the proposed method exploits the similarity between neighboring regions of masses by designing two new features, namely, NSS-I and NSS-II, which capture global similarity at different scales. Complementary to these global features, uniform local binary patterns are computed to enhance the classification efficiency by combining with the proposed features. The performance of the features are evaluated using the images from the mini-mammographic image analysis society (mini-MIAS) and digital database for screening mammography (DDSM) databases, where a tenfold cross-validation technique is incorporated with Fisher linear discriminant analysis, after selecting the optimal set of features using stepwise logistic regression method. The best area under the receiver operating characteristic curve of 0.98 with an accuracy of is achieved with the mini-MIAS database, while the same for the DDSM database is 0.93 with accuracy .

Research information needs on terrestrial vertebrate species of the interior Columbia basin and northern portions of the Klamath and Great Basins: a research, development, and application database.

Treesearch

Bruce G. Marcot

1997-01-01

Research information needs on selected invertebrates and all vertebrates of the interior Columbia River basin and adjacent areas in the United States were collected into a research, development, and application database as part of the Interior Columbia Basin Ecosystem Management Project. The database includes 482 potential research study topics on 232 individual...

Global distribution of minerals in arid soils as lower boundary condition in dust models

NASA Astrophysics Data System (ADS)

Nickovic, Slobodan

2010-05-01

Mineral dust eroded from arid soils affects the radiation budget of the Earth system, modifies ocean bioproductivity and influences human health. Dust aerosol is a complex mixture of minerals. Dust mineral composition has several potentially important impacts to environment and society. Iron and phosphorus embedded in mineral aerosol are essential for the primary marine productivity when dust deposits over the open ocean. Dust also acts as efficient agent for heterogeneous ice nucleation and this process is dependent on mineralogical structure of dust. Recent findings in medical geology indicate possible role of minerals to human health. In this study, a new 1-km global database was developed for several minerals (Illite, Kaolinite, Smectite, Calcite, Quartz, Feldspar, Hematite and Gypsum) embedded in clay and silt populations of arid soils. For the database generation, high-resolution data sets on soil textures, soil types and land cover was used. Tin addition to the selected minerals, phosphorus was also added whose geographical distribution was specified from compiled literature and data on soil types. The developed global database was used to specify sources of mineral fractions in the DREAM dust model and to simulate atmospheric paths of minerals and their potential impacts on marine biochemistry and tropospheric ice nucleation.