The Mediating Role of Intercultural Wonderment: Connecting Programmatic Components to Global Outcomes in Study Abroad

ERIC Educational Resources Information Center

Engberg, Mark E.; Jourian, T. J.; Davidson, Lisa M.

2016-01-01

This study examines the mediating role of intercultural wonderment in relation to students' development of a global perspective. We utilize both confirmatory factor analysis and structural equation modeling to validate the intercultural wonderment construct and test the direct and indirect effects of the structural pathways in the model,…

Global stability of an age-structure epidemic model with imperfect vaccination and relapse

NASA Astrophysics Data System (ADS)

Cao, Bin; Huo, Hai-Feng; Xiang, Hong

2017-11-01

A new age-structured epidemic model with imperfect vaccination and relapse is proposed. The total population of our model is partitioned into five subclasses: susceptible class S, vaccinated class V, exposed class E, infectious class I and removed class R. Age-structures are equipped with in exposed and recovered classes. Furthermore, imperfect vaccination is also introduced in our model. The basic reproduction number R0 is defined and proved as a threshold parameter of the model. Asymptotic smoothness of solutions and uniform persistence of the system are showed via reformulating the system as a system of Volterra integral equation. Furthermore, by constructing proper Volterra-type Lyapunov functional we get when R0 < 1, the disease-free equilibrium is globally asymptotically stable. When R0 > 1, the endemic equilibrium is globally stable. Our results show that to increase the efficiency of vaccination and reduce influence of relapse are vital essential for controlling epidemic.

Global 7 km mesh nonhydrostatic Model Intercomparison Project for improving TYphoon forecast (TYMIP-G7): experimental design and preliminary results

NASA Astrophysics Data System (ADS)

Nakano, Masuo; Wada, Akiyoshi; Sawada, Masahiro; Yoshimura, Hiromasa; Onishi, Ryo; Kawahara, Shintaro; Sasaki, Wataru; Nasuno, Tomoe; Yamaguchi, Munehiko; Iriguchi, Takeshi; Sugi, Masato; Takeuchi, Yoshiaki

2017-03-01

Recent advances in high-performance computers facilitate operational numerical weather prediction by global hydrostatic atmospheric models with horizontal resolutions of ˜ 10 km. Given further advances in such computers and the fact that the hydrostatic balance approximation becomes invalid for spatial scales < 10 km, the development of global nonhydrostatic models with high accuracy is urgently required. The Global 7 km mesh nonhydrostatic Model Intercomparison Project for improving TYphoon forecast (TYMIP-G7) is designed to understand and statistically quantify the advantages of high-resolution nonhydrostatic global atmospheric models to improve tropical cyclone (TC) prediction. A total of 137 sets of 5-day simulations using three next-generation nonhydrostatic global models with horizontal resolutions of 7 km and a conventional hydrostatic global model with a horizontal resolution of 20 km were run on the Earth Simulator. The three 7 km mesh nonhydrostatic models are the nonhydrostatic global spectral atmospheric Double Fourier Series Model (DFSM), the Multi-Scale Simulator for the Geoenvironment (MSSG) and the Nonhydrostatic ICosahedral Atmospheric Model (NICAM). The 20 km mesh hydrostatic model is the operational Global Spectral Model (GSM) of the Japan Meteorological Agency. Compared with the 20 km mesh GSM, the 7 km mesh models reduce systematic errors in the TC track, intensity and wind radii predictions. The benefits of the multi-model ensemble method were confirmed for the 7 km mesh nonhydrostatic global models. While the three 7 km mesh models reproduce the typical axisymmetric mean inner-core structure, including the primary and secondary circulations, the simulated TC structures and their intensities in each case are very different for each model. In addition, the simulated track is not consistently better than that of the 20 km mesh GSM. These results suggest that the development of more sophisticated initialization techniques and model physics is needed to further improve the TC prediction.

An in silico algal toxicity model with a wide applicability potential for industrial chemicals and pharmaceuticals.

PubMed

Önlü, Serli; Saçan, Melek Türker

2017-04-01

The authors modeled the 72-h algal toxicity data of hundreds of chemicals with different modes of action as a function of chemical structures. They developed mode of action-based local quantitative structure-toxicity relationship (QSTR) models for nonpolar and polar narcotics as well as a global QSTR model with a wide applicability potential for industrial chemicals and pharmaceuticals. The present study rigorously evaluated the generated models, meeting the Organisation for Economic Co-operation and Development principles of robustness, validity, and transparency. The proposed global model had a broad structural coverage for the toxicity prediction of diverse chemicals (some of which are high-production volume chemicals) with no experimental toxicity data. The global model is potentially useful for endpoint predictions, the evaluation of algal toxicity screening, and the prioritization of chemicals, as well as for the decision of further testing and the development of risk-management measures in a scientific and regulatory frame. Environ Toxicol Chem 2017;36:1012-1019. © 2016 SETAC. © 2016 SETAC.

Global Plasmaspheric Imaging: A New "Light" Focusing on Familiar Questions

NASA Technical Reports Server (NTRS)

Adrian, M. L.; Six, N. Frank (Technical Monitor)

2002-01-01

Until recently plasmaspheric physics, for that matter, magnetospheric physics as a whole, has relied primarily on single point in-situ measurement, theory, modeling, and a considerable amount of extrapolation in order to envision the global structure of the plasmasphere. This condition changed with the launch of the IMAGE satellite in March 2000. Using the Extreme Ultraviolet (EUV) imager on WAGE, we can now view the global structure of the plasmasphere bathed in the glow of resonantly scattered 30.4 nm radiation allowing the space physics community to view the dynamics of this global structure as never before. This talk will: (1) define the plasmasphere from the perspective of plasmaspheric physics prior to March 2000; (2) present a review of EUV imaging optics and the IMAGE mission; and focus on efforts to understand an old and familiar feature of plasmaspheric physics, embedded plasmaspheric density troughs, in this new global light with the assistance of forward modeling.

Evaluation of gravitational gradients generated by Earth's crustal structures

NASA Astrophysics Data System (ADS)

Novák, Pavel; Tenzer, Robert; Eshagh, Mehdi; Bagherbandi, Mohammad

2013-02-01

Spectral formulas for the evaluation of gravitational gradients generated by upper Earth's mass components are presented in the manuscript. The spectral approach allows for numerical evaluation of global gravitational gradient fields that can be used to constrain gravitational gradients either synthesised from global gravitational models or directly measured by the spaceborne gradiometer on board of the GOCE satellite mission. Gravitational gradients generated by static atmospheric, topographic and continental ice masses are evaluated numerically based on available global models of Earth's topography, bathymetry and continental ice sheets. CRUST2.0 data are then applied for the numerical evaluation of gravitational gradients generated by mass density contrasts within soft and hard sediments, upper, middle and lower crust layers. Combined gravitational gradients are compared to disturbing gravitational gradients derived from a global gravitational model and an idealised Earth's model represented by the geocentric homogeneous biaxial ellipsoid GRS80. The methodology could be used for improved modelling of the Earth's inner structure.

Global QSAR modeling of logP values of phenethylamines acting as adrenergic alpha-1 receptor agonists.

PubMed

Yadav, Mukesh; Joshi, Shobha; Nayarisseri, Anuraj; Jain, Anuja; Hussain, Aabid; Dubey, Tushar

2013-06-01

Global QSAR models predict biological response of molecular structures which are generic in particular class. A global QSAR dataset admits structural features derived from larger chemical space, intricate to model but more applicable in medicinal chemistry. The present work is global in either sense of structural diversity in QSAR dataset or large number of descriptor input. Forty phenethylamine structure derivatives were selected from a large pool (904) of similar phenethylamines available in Pubchem database. LogP values of selected candidates were collected from physical properties database (PHYSPROP) determined in identical set of conditions. Attempts to model logP value have produced significant QSAR models. MLR aided linear one-variable and two-variable QSAR models with their respective R(2) (0.866, 0.937), R(2)A (0.862, 0.932), F-stat (181.936, 199.812) and Standard Error (0.365, 0.255) are statistically fit and found predictive after internal validation and external validation. The descriptors chosen after improvisation and optimization reveal mechanistic part of work in terms of Verhaar model of Fish base-line toxicity from MLOGP, i.e. (BLTF96) and 3D-MoRSE -signal 15 /unweighted molecular descriptor calculated by summing atom weights viewed by a different angular scattering function (Mor15u) are crucial in regulation of logP values of phenethylamines.

Global identifiability of linear compartmental models--a computer algebra algorithm.

PubMed

Audoly, S; D'Angiò, L; Saccomani, M P; Cobelli, C

1998-01-01

A priori global identifiability deals with the uniqueness of the solution for the unknown parameters of a model and is, thus, a prerequisite for parameter estimation of biological dynamic models. Global identifiability is however difficult to test, since it requires solving a system of algebraic nonlinear equations which increases both in nonlinearity degree and number of terms and unknowns with increasing model order. In this paper, a computer algebra tool, GLOBI (GLOBal Identifiability) is presented, which combines the topological transfer function method with the Buchberger algorithm, to test global identifiability of linear compartmental models. GLOBI allows for the automatic testing of a priori global identifiability of general structure compartmental models from general multi input-multi output experiments. Examples of usage of GLOBI to analyze a priori global identifiability of some complex biological compartmental models are provided.

Bayesian comparison of protein structures using partial Procrustes distance.

PubMed

Ejlali, Nasim; Faghihi, Mohammad Reza; Sadeghi, Mehdi

2017-09-26

An important topic in bioinformatics is the protein structure alignment. Some statistical methods have been proposed for this problem, but most of them align two protein structures based on the global geometric information without considering the effect of neighbourhood in the structures. In this paper, we provide a Bayesian model to align protein structures, by considering the effect of both local and global geometric information of protein structures. Local geometric information is incorporated to the model through the partial Procrustes distance of small substructures. These substructures are composed of β-carbon atoms from the side chains. Parameters are estimated using a Markov chain Monte Carlo (MCMC) approach. We evaluate the performance of our model through some simulation studies. Furthermore, we apply our model to a real dataset and assess the accuracy and convergence rate. Results show that our model is much more efficient than previous approaches.

The effect of large-scale model time step and multiscale coupling frequency on cloud climatology, vertical structure, and rainfall extremes in a superparameterized GCM

DOE PAGES

Yu, Sungduk; Pritchard, Michael S.

2015-12-17

The effect of global climate model (GCM) time step—which also controls how frequently global and embedded cloud resolving scales are coupled—is examined in the Superparameterized Community Atmosphere Model ver 3.0. Systematic bias reductions of time-mean shortwave cloud forcing (~10 W/m 2) and longwave cloud forcing (~5 W/m 2) occur as scale coupling frequency increases, but with systematically increasing rainfall variance and extremes throughout the tropics. An overarching change in the vertical structure of deep tropical convection, favoring more bottom-heavy deep convection as a global model time step is reduced may help orchestrate these responses. The weak temperature gradient approximation ismore » more faithfully satisfied when a high scale coupling frequency (a short global model time step) is used. These findings are distinct from the global model time step sensitivities of conventionally parameterized GCMs and have implications for understanding emergent behaviors of multiscale deep convective organization in superparameterized GCMs. Lastly, the results may also be useful for helping to tune them.« less

The effect of large-scale model time step and multiscale coupling frequency on cloud climatology, vertical structure, and rainfall extremes in a superparameterized GCM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, Sungduk; Pritchard, Michael S.

The effect of global climate model (GCM) time step—which also controls how frequently global and embedded cloud resolving scales are coupled—is examined in the Superparameterized Community Atmosphere Model ver 3.0. Systematic bias reductions of time-mean shortwave cloud forcing (~10 W/m 2) and longwave cloud forcing (~5 W/m 2) occur as scale coupling frequency increases, but with systematically increasing rainfall variance and extremes throughout the tropics. An overarching change in the vertical structure of deep tropical convection, favoring more bottom-heavy deep convection as a global model time step is reduced may help orchestrate these responses. The weak temperature gradient approximation ismore » more faithfully satisfied when a high scale coupling frequency (a short global model time step) is used. These findings are distinct from the global model time step sensitivities of conventionally parameterized GCMs and have implications for understanding emergent behaviors of multiscale deep convective organization in superparameterized GCMs. Lastly, the results may also be useful for helping to tune them.« less

Alanine and proline content modulate global sensitivity to discrete perturbations in disordered proteins.

PubMed

Perez, Romel B; Tischer, Alexander; Auton, Matthew; Whitten, Steven T

2014-12-01

Molecular transduction of biological signals is understood primarily in terms of the cooperative structural transitions of protein macromolecules, providing a mechanism through which discrete local structure perturbations affect global macromolecular properties. The recognition that proteins lacking tertiary stability, commonly referred to as intrinsically disordered proteins (IDPs), mediate key signaling pathways suggests that protein structures without cooperative intramolecular interactions may also have the ability to couple local and global structure changes. Presented here are results from experiments that measured and tested the ability of disordered proteins to couple local changes in structure to global changes in structure. Using the intrinsically disordered N-terminal region of the p53 protein as an experimental model, a set of proline (PRO) and alanine (ALA) to glycine (GLY) substitution variants were designed to modulate backbone conformational propensities without introducing non-native intramolecular interactions. The hydrodynamic radius (R(h)) was used to monitor changes in global structure. Circular dichroism spectroscopy showed that the GLY substitutions decreased polyproline II (PP(II)) propensities relative to the wild type, as expected, and fluorescence methods indicated that substitution-induced changes in R(h) were not associated with folding. The experiments showed that changes in local PP(II) structure cause changes in R(h) that are variable and that depend on the intrinsic chain propensities of PRO and ALA residues, demonstrating a mechanism for coupling local and global structure changes. Molecular simulations that model our results were used to extend the analysis to other proteins and illustrate the generality of the observed PRO and alanine effects on the structures of IDPs. © 2014 Wiley Periodicals, Inc.

Alanine and proline content modulate global sensitivity to discrete perturbations in disordered proteins

PubMed Central

Perez, Romel B.; Tischer, Alexander; Auton, Matthew; Whitten, Steven T.

2014-01-01

Molecular transduction of biological signals is understood primarily in terms of the cooperative structural transitions of protein macromolecules, providing a mechanism through which discrete local structure perturbations affect global macromolecular properties. The recognition that proteins lacking tertiary stability, commonly referred to as intrinsically disordered proteins, mediate key signaling pathways suggests that protein structures without cooperative intramolecular interactions may also have the ability to couple local and global structure changes. Presented here are results from experiments that measured and tested the ability of disordered proteins to couple local changes in structure to global changes in structure. Using the intrinsically disordered N-terminal region of the p53 protein as an experimental model, a set of proline and alanine to glycine substitution variants were designed to modulate backbone conformational propensities without introducing non-native intramolecular interactions. The hydrodynamic radius (Rh) was used to monitor changes in global structure. Circular dichroism spectroscopy showed that the glycine substitutions decreased polyproline II (PPII) propensities relative to the wild type, as expected, and fluorescence methods indicated that substitution-induced changes in Rh were not associated with folding. The experiments showed that changes in local PPII structure cause changes in Rh that are variable and that depend on the intrinsic chain propensities of proline and alanine residues, demonstrating a mechanism for coupling local and global structure changes. Molecular simulations that model our results were used to extend the analysis to other proteins and illustrate the generality of the observed proline and alanine effects on the structures of intrinsically disordered proteins. PMID:25244701

Applications of a global nuclear-structure model to studies of the heaviest elements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moeller, P.; Nix, J.R.

1993-10-01

We present some new results on heavy-element nuclear-structure properties calculated on the basis of the finite-range droplet model and folded-Yukawa single-particle potential. Specifically, we discuss calculations of nuclear ground-state masses and microscopic corrections, {alpha}-decay properties, {beta}-decay properties, fission potential-energy surfaces, and spontaneous-fission half-lives. These results, obtained in a global nuclear-structure approach, are particularly reliable for describing the stability properties of the heaviest elements.

Protein structure modeling for CASP10 by multiple layers of global optimization.

PubMed

Joo, Keehyoung; Lee, Juyong; Sim, Sangjin; Lee, Sun Young; Lee, Kiho; Heo, Seungryong; Lee, In-Ho; Lee, Sung Jong; Lee, Jooyoung

2014-02-01

In the template-based modeling (TBM) category of CASP10 experiment, we introduced a new protocol called protein modeling system (PMS) to generate accurate protein structures in terms of side-chains as well as backbone trace. In the new protocol, a global optimization algorithm, called conformational space annealing (CSA), is applied to the three layers of TBM procedure: multiple sequence-structure alignment, 3D chain building, and side-chain re-modeling. For 3D chain building, we developed a new energy function which includes new distance restraint terms of Lorentzian type (derived from multiple templates), and new energy terms that combine (physical) energy terms such as dynamic fragment assembly (DFA) energy, DFIRE statistical potential energy, hydrogen bonding term, etc. These physical energy terms are expected to guide the structure modeling especially for loop regions where no template structures are available. In addition, we developed a new quality assessment method based on random forest machine learning algorithm to screen templates, multiple alignments, and final models. For TBM targets of CASP10, we find that, due to the combination of three stages of CSA global optimizations and quality assessment, the modeling accuracy of PMS improves at each additional stage of the protocol. It is especially noteworthy that the side-chains of the final PMS models are far more accurate than the models in the intermediate steps. Copyright © 2013 Wiley Periodicals, Inc.

Full waveform inversion using envelope-based global correlation norm

NASA Astrophysics Data System (ADS)

Oh, Ju-Won; Alkhalifah, Tariq

2018-05-01

To increase the feasibility of full waveform inversion on real data, we suggest a new objective function, which is defined as the global correlation of the envelopes of modelled and observed data. The envelope-based global correlation norm has the advantage of the envelope inversion that generates artificial low-frequency information, which provides the possibility to recover long-wavelength structure in an early stage. In addition, the envelope-based global correlation norm maintains the advantage of the global correlation norm, which reduces the sensitivity of the misfit to amplitude errors so that the performance of inversion on real data can be enhanced when the exact source wavelet is not available and more complex physics are ignored. Through the synthetic example for 2-D SEG/EAGE overthrust model with inaccurate source wavelet, we compare the performance of four different approaches, which are the least-squares waveform inversion, least-squares envelope inversion, global correlation norm and envelope-based global correlation norm. Finally, we apply the envelope-based global correlation norm on the 3-D Ocean Bottom Cable (OBC) data from the North Sea. The envelope-based global correlation norm captures the strong reflections from the high-velocity caprock and generates artificial low-frequency reflection energy that helps us recover long-wavelength structure of the model domain in the early stages. From this long-wavelength model, the conventional global correlation norm is sequentially applied to invert for higher-resolution features of the model.

Structure and Controls of the Global Virtual Water Trade Network

NASA Astrophysics Data System (ADS)

Suweis, S. S.

2011-12-01

Recurrent or ephemeral water shortages are a crucial global challenge, in particular because of their impacts on food production. The global character of this challenge is reflected in the trade among nations of virtual water, i.e. the amount of water used to produce a given commodity. We build, analyze and model the network describing the transfer of virtual water between world nations for staple food products. We find that all the key features of the network are well described by a model, the fitness model, that reproduces both the topological and weighted properties of the global virtual water trade network, by assuming as sole controls each country's gross domestic product and yearly rainfall on agricultural areas. We capture and quantitatively describe the high degree of globalization of water trade and show that a small group of nations play a key role in the connectivity of the network and in the global redistribution of virtual water. Finally, we illustrate examples of prediction of the structure of the network under future political, economic and climatic scenarios, suggesting that the crucial importance of the countries that trade large volumes of water will be strengthened. Our results show the importance of incorporating a network framework in the study of virtual water trades and provide a model to study the structure and resilience of the GVWTN under future scenarios for social, economic and climate change.

Extending Structural Analyses of the Rosenberg Self-Esteem Scale to Consider Criterion-Related Validity: Can Composite Self-Esteem Scores Be Good Enough?

PubMed

Donnellan, M Brent; Ackerman, Robert A; Brecheen, Courtney

2016-01-01

Although the Rosenberg Self-Esteem Scale (RSES) is the most widely used measure of global self-esteem in the literature, there are ongoing disagreements about its factor structure. This methodological debate informs how the measure should be used in substantive research. Using a sample of 1,127 college students, we test the overall fit of previously specified models for the RSES, including a newly proposed bifactor solution (McKay, Boduszek, & Harvey, 2014 ). We extend previous work by evaluating how various latent factors from these structural models are related to a set of criterion variables frequently studied in the self-esteem literature. A strict unidimensional model poorly fit the data, whereas models that accounted for correlations between negatively and positively keyed items tended to fit better. However, global factors from viable structural models had similar levels of association with criterion variables and with the pattern of results obtained with a composite global self-esteem variable calculated from observed scores. Thus, we did not find compelling evidence that different structural models had substantive implications, thereby reducing (but not eliminating) concerns about the integrity of the self-esteem literature based on overall composite scores for the RSES.

A global/local analysis method for treating details in structural design

NASA Technical Reports Server (NTRS)

Aminpour, Mohammad A.; Mccleary, Susan L.; Ransom, Jonathan B.

1993-01-01

A method for analyzing global/local behavior of plate and shell structures is described. In this approach, a detailed finite element model of the local region is incorporated within a coarser global finite element model. The local model need not be nodally compatible (i.e., need not have a one-to-one nodal correspondence) with the global model at their common boundary; therefore, the two models may be constructed independently. The nodal incompatibility of the models is accounted for by introducing appropriate constraint conditions into the potential energy in a hybrid variational formulation. The primary advantage of this method is that the need for transition modeling between global and local models is eliminated. Eliminating transition modeling has two benefits. First, modeling efforts are reduced since tedious and complex transitioning need not be performed. Second, errors due to the mesh distortion, often unavoidable in mesh transitioning, are minimized by avoiding distorted elements beyond what is needed to represent the geometry of the component. The method is applied reduced to a plate loaded in tension and transverse bending. The plate has a central hole, and various hole sixes and shapes are studied. The method is also applied to a composite laminated fuselage panel with a crack emanating from a window in the panel. While this method is applied herein to global/local problems, it is also applicable to the coupled analysis of independently modeled components as well as adaptive refinement.

History, Structure and Agency in Global Health Governance Comment on "Global Health Governance Challenges 2016 - Are We Ready?"

PubMed

Gill, Stephen; Benatar, Solomon R

2016-08-29

Ilona Kickbusch's thought provoking editorial is criticized in this commentary, partly because she fails to refer to previous critical work on the global conditions and policies that sustain inequality, poverty, poor health and damage to the biosphere and, as a result, she misreads global power and elides consideration of the fundamental historical structures of political and material power that shape agency in global health governance. We also doubt that global health can be improved through structures and processes of multilateralism that are premised on the continued reproduction of the ecologically myopic and socially unsustainable market civilization model of capitalist development that currently prevails in the world economy. This model drives net financial flows from poor to rich countries and from the poor to the affluent and super wealthy individuals. By contrast, we suggest that significant progress in global health requires a profound and socially just restructuring of global power, greater global solidarity and the "development of sustainability." © 2017 The Author(s); Published by Kerman University of Medical Sciences. This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Multi-region statistical shape model for cochlear implantation

NASA Astrophysics Data System (ADS)

Romera, Jordi; Kjer, H. Martin; Piella, Gemma; Ceresa, Mario; González Ballester, Miguel A.

2016-03-01

Statistical shape models are commonly used to analyze the variability between similar anatomical structures and their use is established as a tool for analysis and segmentation of medical images. However, using a global model to capture the variability of complex structures is not enough to achieve the best results. The complexity of a proper global model increases even more when the amount of data available is limited to a small number of datasets. Typically, the anatomical variability between structures is associated to the variability of their physiological regions. In this paper, a complete pipeline is proposed for building a multi-region statistical shape model to study the entire variability from locally identified physiological regions of the inner ear. The proposed model, which is based on an extension of the Point Distribution Model (PDM), is built for a training set of 17 high-resolution images (24.5 μm voxels) of the inner ear. The model is evaluated according to its generalization ability and specificity. The results are compared with the ones of a global model built directly using the standard PDM approach. The evaluation results suggest that better accuracy can be achieved using a regional modeling of the inner ear.

Temperature-driven regime shifts in the dynamics of size-structured populations.

PubMed

Ohlberger, Jan; Edeline, Eric; Vøllestad, Leif Asbjørn; Stenseth, Nils C; Claessen, David

2011-02-01

Global warming impacts virtually all biota and ecosystems. Many of these impacts are mediated through direct effects of temperature on individual vital rates. Yet how this translates from the individual to the population level is still poorly understood, hampering the assessment of global warming impacts on population structure and dynamics. Here, we study the effects of temperature on intraspecific competition and cannibalism and the population dynamical consequences in a size-structured fish population. We use a physiologically structured consumer-resource model in which we explicitly model the temperature dependencies of the consumer vital rates and the resource population growth rate. Our model predicts that increased temperature decreases resource density despite higher resource growth rates, reflecting stronger intraspecific competition among consumers. At a critical temperature, the consumer population dynamics destabilize and shift from a stable equilibrium to competition-driven generation cycles that are dominated by recruits. As a consequence, maximum age decreases and the proportion of younger and smaller-sized fish increases. These model predictions support the hypothesis of decreasing mean body sizes due to increased temperatures. We conclude that in size-structured fish populations, global warming may increase competition, favor smaller size classes, and induce regime shifts that destabilize population and community dynamics.

Measuring the impact of final demand on global production system based on Markov process

NASA Astrophysics Data System (ADS)

Xing, Lizhi; Guan, Jun; Wu, Shan

2018-07-01

Input-output table is a comprehensive and detailed in describing the national economic systems, consisting of supply and demand information among various industrial sectors. The complex network, a theory and method for measuring the structure of complex system, can depict the structural properties of social and economic systems, and reveal the complicated relationships between the inner hierarchies and the external macroeconomic functions. This paper tried to measure the globalization degree of industrial sectors on the global value chain. Firstly, it constructed inter-country input-output network models to reproduce the topological structure of global economic system. Secondly, it regarded the propagation of intermediate goods on the global value chain as Markov process and introduced counting first passage betweenness to quantify the added processing amount when globally final demand stimulates this production system. Thirdly, it analyzed the features of globalization at both global and country-sector level

Global asymptotic stability of density dependent integral population projection models.

PubMed

Rebarber, Richard; Tenhumberg, Brigitte; Townley, Stuart

2012-02-01

Many stage-structured density dependent populations with a continuum of stages can be naturally modeled using nonlinear integral projection models. In this paper, we study a trichotomy of global stability result for a class of density dependent systems which include a Platte thistle model. Specifically, we identify those systems parameters for which zero is globally asymptotically stable, parameters for which there is a positive asymptotically stable equilibrium, and parameters for which there is no asymptotically stable equilibrium. Copyright © 2011 Elsevier Inc. All rights reserved.

Global thermal models of the lithosphere

NASA Astrophysics Data System (ADS)

Cammarano, F.; Guerri, M.

2017-12-01

Unraveling the thermal structure of the outermost shell of our planet is key for understanding its evolution. We obtain temperatures from interpretation of global shear-velocity (VS) models. Long-wavelength thermal structure is well determined by seismic models and only slightly affected by compositional effects and uncertainties in mineral-physics properties. Absolute temperatures and gradients with depth, however, are not well constrained. Adding constraints from petrology, heat-flow observations and thermal evolution of oceanic lithosphere help to better estimate absolute temperatures in the top part of the lithosphere. We produce global thermal models of the lithosphere at different spatial resolution, up to spherical-harmonics degree 24, and provide estimated standard deviations. We provide purely seismic thermal (TS) model and hybrid models where temperatures are corrected with steady-state conductive geotherms on continents and cooling model temperatures on oceanic regions. All relevant physical properties, with the exception of thermal conductivity, are based on a self-consistent thermodynamical modelling approach. Our global thermal models also include density and compressional-wave velocities (VP) as obtained either assuming no lateral variations in composition or a simple reference 3-D compositional structure, which takes into account a chemically depleted continental lithosphere. We found that seismically-derived temperatures in continental lithosphere fit well, overall, with continental geotherms, but a large variation in radiogenic heat is required to reconcile them with heat flow (long wavelength) observations. Oceanic shallow lithosphere below mid-oceanic ridges and young oceans is colder than expected, confirming the possible presence of a dehydration boundary around 80 km depth already suggested in previous studies. The global thermal models should serve as the basis to move at a smaller spatial scale, where additional thermo-chemical variations required by geophysical observations can be included.

Global industrial impact coefficient based on random walk process and inter-country input-output table

NASA Astrophysics Data System (ADS)

Xing, Lizhi; Dong, Xianlei; Guan, Jun

2017-04-01

Input-output table is very comprehensive and detailed in describing the national economic system with lots of economic relationships, which contains supply and demand information among industrial sectors. The complex network, a theory and method for measuring the structure of complex system, can describe the structural characteristics of the internal structure of the research object by measuring the structural indicators of the social and economic system, revealing the complex relationship between the inner hierarchy and the external economic function. This paper builds up GIVCN-WIOT models based on World Input-Output Database in order to depict the topological structure of Global Value Chain (GVC), and assumes the competitive advantage of nations is equal to the overall performance of its domestic sectors' impact on the GVC. Under the perspective of econophysics, Global Industrial Impact Coefficient (GIIC) is proposed to measure the national competitiveness in gaining information superiority and intermediate interests. Analysis of GIVCN-WIOT models yields several insights including the following: (1) sectors with higher Random Walk Centrality contribute more to transmitting value streams within the global economic system; (2) Half-Value Ratio can be used to measure robustness of open-economy macroeconomics in the process of globalization; (3) the positive correlation between GIIC and GDP indicates that one country's global industrial impact could reveal its international competitive advantage.

Modeling Global Spatial-Temporal Evolution of Society: Hyperbolic Growth and Historical Cycles

NASA Astrophysics Data System (ADS)

Kurkina, E. S.

2011-09-01

The global historical processes are under consideration; and laws of global evolution of the world community are studied. The world community is considered as a united complex self-developing and self-organizing system. It supposed that the main driving force of social-economical evolution was the positive feedback between the population size and the level of technological development, which was a cause of growth in blow-up regime both of population and of global economic indexes. The study is supported by the results of mathematical modeling founded on a nonlinear heat equation with a source. Every social-economical epoch characterizes by own specific spatial distributed structures. So the global dynamics of world community during the whole history is investigated throughout the prism of the developing of spatial-temporal structures. The model parameters have been chosen so that 1) total population follows stable hyperbolic growth, consistently with the demographic data; 2) the evolution of the World-System goes through 11 stages corresponding to the main historical epochs.

Globalization and world trade

Treesearch

Peter J. Ince; Joseph Buongiorno

2007-01-01

This chapter discusses economic globalization and world trade in relation to forest sector modeling for the US/North American region. It discusses drivers of economic globalization and related structural changes in US forest product markets, including currency exchange rates and differences in manufacturing costs that have contributed to the displacement of global...

Challenges in the global QCD analysis of parton structure of nucleons

NASA Astrophysics Data System (ADS)

Tung, Wu-Ki

2000-12-01

We briefly summarize the current status of global QCD analysis of the parton structure of the nucleon and then highlight the open questions and challenges which confront this endeavor on which much of the phenomenology of the Standard Model and the search of New Physics depend.

Reproductive tourism and the quest for global gender justice.

PubMed

Donchin, Anne

2010-09-01

Reproductive tourism is a manifestation of a larger, more inclusive trend toward globalization of capitalist cultural and material economies. This paper discusses the development of cross-border assisted reproduction within the globalized economy, transnational and local structural processes that influence the trade, social relations intersecting it, and implications for the healthcare systems affected. I focus on prevailing gender structures embedded in the cross-border trade and their intersection with other social and economic structures that reflect and impact globalization. I apply a social connection model of responsibility for unjust outcomes and consider strategies to counter structural injustices embedded in this industry. The concluding section discusses policy reforms and proposals for collaborative action to preclude further injustices and extend full human rights to all.

Foundations for a multiscale collaborative Earth model

NASA Astrophysics Data System (ADS)

Afanasiev, Michael; Peter, Daniel; Sager, Korbinian; Simutė, Saulė; Ermert, Laura; Krischer, Lion; Fichtner, Andreas

2016-01-01

We present a computational framework for the assimilation of local to global seismic data into a consistent model describing Earth structure on all seismically accessible scales. This Collaborative Seismic Earth Model (CSEM) is designed to meet the following requirements: (i) Flexible geometric parametrization, capable of capturing topography and bathymetry, as well as all aspects of potentially resolvable structure, including small-scale heterogeneities and deformations of internal discontinuities. (ii) Independence of any particular wave equation solver, in order to enable the combination of inversion techniques suitable for different types of seismic data. (iii) Physical parametrization that allows for full anisotropy and for variations in attenuation and density. While not all of these parameters are always resolvable, the assimilation of data that constrain any parameter subset should be possible. (iv) Ability to accommodate successive refinements through the incorporation of updates on any scale as new data or inversion techniques become available. (v) Enable collaborative Earth model construction. The structure of the initial CSEM is represented on a variable-resolution tetrahedral mesh. It is assembled from a long-wavelength 3-D global model into which several regional-scale tomographies are embedded. We illustrate the CSEM workflow of successive updating with two examples from Japan and the Western Mediterranean, where we constrain smaller scale structure using full-waveform inversion. Furthermore, we demonstrate the ability of the CSEM to act as a vehicle for the combination of different tomographic techniques with a joint full-waveform and traveltime ray tomography of Europe. This combination broadens the exploitable frequency range of the individual techniques, thereby improving resolution. We perform two iterations of a whole-Earth full-waveform inversion using a long-period reference data set from 225 globally recorded earthquakes. At this early stage of the CSEM development, the broad global updates mostly act to remove artefacts from the assembly of the initial CSEM. During the future evolution of the CSEM, the reference data set will be used to account for the influence of small-scale refinements on large-scale global structure. The CSEM as a computational framework is intended to help bridging the gap between local, regional and global tomography, and to contribute to the development of a global multiscale Earth model. While the current construction serves as a first proof of concept, future refinements and additions will require community involvement, which is welcome at this stage already.

Efficient Global Aerodynamic Modeling from Flight Data

NASA Technical Reports Server (NTRS)

Morelli, Eugene A.

2012-01-01

A method for identifying global aerodynamic models from flight data in an efficient manner is explained and demonstrated. A novel experiment design technique was used to obtain dynamic flight data over a range of flight conditions with a single flight maneuver. Multivariate polynomials and polynomial splines were used with orthogonalization techniques and statistical modeling metrics to synthesize global nonlinear aerodynamic models directly and completely from flight data alone. Simulation data and flight data from a subscale twin-engine jet transport aircraft were used to demonstrate the techniques. Results showed that global multivariate nonlinear aerodynamic dependencies could be accurately identified using flight data from a single maneuver. Flight-derived global aerodynamic model structures, model parameter estimates, and associated uncertainties were provided for all six nondimensional force and moment coefficients for the test aircraft. These models were combined with a propulsion model identified from engine ground test data to produce a high-fidelity nonlinear flight simulation very efficiently. Prediction testing using a multi-axis maneuver showed that the identified global model accurately predicted aircraft responses.

Using Multivariate Adaptive Regression Spline and Artificial Neural Network to Simulate Urbanization in Mumbai, India

NASA Astrophysics Data System (ADS)

Ahmadlou, M.; Delavar, M. R.; Tayyebi, A.; Shafizadeh-Moghadam, H.

2015-12-01

Land use change (LUC) models used for modelling urban growth are different in structure and performance. Local models divide the data into separate subsets and fit distinct models on each of the subsets. Non-parametric models are data driven and usually do not have a fixed model structure or model structure is unknown before the modelling process. On the other hand, global models perform modelling using all the available data. In addition, parametric models have a fixed structure before the modelling process and they are model driven. Since few studies have compared local non-parametric models with global parametric models, this study compares a local non-parametric model called multivariate adaptive regression spline (MARS), and a global parametric model called artificial neural network (ANN) to simulate urbanization in Mumbai, India. Both models determine the relationship between a dependent variable and multiple independent variables. We used receiver operating characteristic (ROC) to compare the power of the both models for simulating urbanization. Landsat images of 1991 (TM) and 2010 (ETM+) were used for modelling the urbanization process. The drivers considered for urbanization in this area were distance to urban areas, urban density, distance to roads, distance to water, distance to forest, distance to railway, distance to central business district, number of agricultural cells in a 7 by 7 neighbourhoods, and slope in 1991. The results showed that the area under the ROC curve for MARS and ANN was 94.77% and 95.36%, respectively. Thus, ANN performed slightly better than MARS to simulate urban areas in Mumbai, India.

A stochastic global identification framework for aerospace structures operating under varying flight states

NASA Astrophysics Data System (ADS)

Kopsaftopoulos, Fotis; Nardari, Raphael; Li, Yu-Hung; Chang, Fu-Kuo

2018-01-01

In this work, a novel data-based stochastic "global" identification framework is introduced for aerospace structures operating under varying flight states and uncertainty. In this context, the term "global" refers to the identification of a model that is capable of representing the structure under any admissible flight state based on data recorded from a sample of these states. The proposed framework is based on stochastic time-series models for representing the structural dynamics and aeroelastic response under multiple flight states, with each state characterized by several variables, such as the airspeed, angle of attack, altitude and temperature, forming a flight state vector. The method's cornerstone lies in the new class of Vector-dependent Functionally Pooled (VFP) models which allow the explicit analytical inclusion of the flight state vector into the model parameters and, hence, system dynamics. This is achieved via the use of functional data pooling techniques for optimally treating - as a single entity - the data records corresponding to the various flight states. In this proof-of-concept study the flight state vector is defined by two variables, namely the airspeed and angle of attack of the vehicle. The experimental evaluation and assessment is based on a prototype bio-inspired self-sensing composite wing that is subjected to a series of wind tunnel experiments under multiple flight states. Distributed micro-sensors in the form of stretchable sensor networks are embedded in the composite layup of the wing in order to provide the sensing capabilities. Experimental data collected from piezoelectric sensors are employed for the identification of a stochastic global VFP model via appropriate parameter estimation and model structure selection methods. The estimated VFP model parameters constitute two-dimensional functions of the flight state vector defined by the airspeed and angle of attack. The identified model is able to successfully represent the wing's aeroelastic response under the admissible flight states via a minimum number of estimated parameters compared to standard identification approaches. The obtained results demonstrate the high accuracy and effectiveness of the proposed global identification framework, thus constituting a first step towards the next generation of "fly-by-feel" aerospace vehicles with state awareness capabilities.

Assessing the factor structures of the 55- and 22-item versions of the conformity to masculine norms inventory.

PubMed

Owen, Jesse

2011-03-01

The current study examined the psychometric properties of the abbreviated versions, 55- and 22-items, of the Conformity to Masculine Norms Inventory (CMNI). The authors tested the factor structure for the 11 subscales of the CMNI-55 and the global masculinity factor for the CMNI-55 and the CMNI-22. In a clinical sample of men and women (n=522), the results supported the 11-factor model. Furthermore, the factor structure was invariant for men and women. The higher order model, which tested the utility of the global masculine score, demonstrated marginal fit. The factor structures for the global masculinity score for the CMNI-22 demonstrated poor fit. Collectively, the results suggest that the CMNI-55 is better represented in a multidimensional construct. The subscales' alpha levels and factor loadings were, generally, within acceptable limits. Gender and ethnic mean level differences are also reported. © The Author(s) 2011

Emergent Global Patterns of Ecosystem Structure and Function from a Mechanistic General Ecosystem Model

PubMed Central

Emmott, Stephen; Hutton, Jon; Lyutsarev, Vassily; Smith, Matthew J.; Scharlemann, Jörn P. W.; Purves, Drew W.

2014-01-01

Anthropogenic activities are causing widespread degradation of ecosystems worldwide, threatening the ecosystem services upon which all human life depends. Improved understanding of this degradation is urgently needed to improve avoidance and mitigation measures. One tool to assist these efforts is predictive models of ecosystem structure and function that are mechanistic: based on fundamental ecological principles. Here we present the first mechanistic General Ecosystem Model (GEM) of ecosystem structure and function that is both global and applies in all terrestrial and marine environments. Functional forms and parameter values were derived from the theoretical and empirical literature where possible. Simulations of the fate of all organisms with body masses between 10 µg and 150,000 kg (a range of 14 orders of magnitude) across the globe led to emergent properties at individual (e.g., growth rate), community (e.g., biomass turnover rates), ecosystem (e.g., trophic pyramids), and macroecological scales (e.g., global patterns of trophic structure) that are in general agreement with current data and theory. These properties emerged from our encoding of the biology of, and interactions among, individual organisms without any direct constraints on the properties themselves. Our results indicate that ecologists have gathered sufficient information to begin to build realistic, global, and mechanistic models of ecosystems, capable of predicting a diverse range of ecosystem properties and their response to human pressures. PMID:24756001

On the emergence of macroscopic transport barriers from staircase structures

NASA Astrophysics Data System (ADS)

Ashourvan, Arash; Diamond, P. H.

2017-01-01

This paper presents a theory for the formation and evolution of coupled density staircases and zonal shear profiles in a simple model of drift-wave turbulence. Density, vorticity, and fluctuation potential enstrophy are the fields evolved in this system. Formation of staircase structures is due to inhomogeneous mixing of generalized potential vorticity (PV), resulting in the sharpening of density and vorticity gradients in some regions, and weakening them in others. When the PV gradients steepen, the density staircase structure develops into a lattice of mesoscale "jumps," and "steps," which are, respectively, the regions of local gradient steepening and flattening. The jumps merge and migrate in radius, leading to the development of macroscale profile structures from mesoscale elements. The positive feedback process, which drives the staircase formation occurs via a Rhines scale dependent mixing length. We present extensive studies of bifurcation physics of the global state, including results on the global flux-gradient relations (flux landscapes) predicted by the model. Furthermore, we demonstrate that, depending on the sources and boundary conditions, either a region of enhanced confinement, or a region with strong turbulence can form at the edge. This suggests that the profile self-organization is a global process, though one which can be described by a local, but nonlinear model. This model is the first to demonstrate how the mesoscale condensation of staircases leads to global states of enhanced confinement.

Emergent global patterns of ecosystem structure and function from a mechanistic general ecosystem model.

PubMed

Harfoot, Michael B J; Newbold, Tim; Tittensor, Derek P; Emmott, Stephen; Hutton, Jon; Lyutsarev, Vassily; Smith, Matthew J; Scharlemann, Jörn P W; Purves, Drew W

2014-04-01

Anthropogenic activities are causing widespread degradation of ecosystems worldwide, threatening the ecosystem services upon which all human life depends. Improved understanding of this degradation is urgently needed to improve avoidance and mitigation measures. One tool to assist these efforts is predictive models of ecosystem structure and function that are mechanistic: based on fundamental ecological principles. Here we present the first mechanistic General Ecosystem Model (GEM) of ecosystem structure and function that is both global and applies in all terrestrial and marine environments. Functional forms and parameter values were derived from the theoretical and empirical literature where possible. Simulations of the fate of all organisms with body masses between 10 µg and 150,000 kg (a range of 14 orders of magnitude) across the globe led to emergent properties at individual (e.g., growth rate), community (e.g., biomass turnover rates), ecosystem (e.g., trophic pyramids), and macroecological scales (e.g., global patterns of trophic structure) that are in general agreement with current data and theory. These properties emerged from our encoding of the biology of, and interactions among, individual organisms without any direct constraints on the properties themselves. Our results indicate that ecologists have gathered sufficient information to begin to build realistic, global, and mechanistic models of ecosystems, capable of predicting a diverse range of ecosystem properties and their response to human pressures.

APOLLO: a quality assessment service for single and multiple protein models.

PubMed

Wang, Zheng; Eickholt, Jesse; Cheng, Jianlin

2011-06-15

We built a web server named APOLLO, which can evaluate the absolute global and local qualities of a single protein model using machine learning methods or the global and local qualities of a pool of models using a pair-wise comparison approach. Based on our evaluations on 107 CASP9 (Critical Assessment of Techniques for Protein Structure Prediction) targets, the predicted quality scores generated from our machine learning and pair-wise methods have an average per-target correlation of 0.671 and 0.917, respectively, with the true model quality scores. Based on our test on 92 CASP9 targets, our predicted absolute local qualities have an average difference of 2.60 Å with the actual distances to native structure. http://sysbio.rnet.missouri.edu/apollo/. Single and pair-wise global quality assessment software is also available at the site.

Estimates of Embodied Global Energy and Air-Emission Intensities of Japanese Products for Building a Japanese Input–Output Life Cycle Assessment Database with a Global System Boundary

PubMed Central

2012-01-01

To build a life cycle assessment (LCA) database of Japanese products embracing their global supply chains in a manner requiring lower time and labor burdens, this study estimates the intensity of embodied global environmental burden for commodities produced in Japan. The intensity of embodied global environmental burden is a measure of the environmental burden generated globally by unit production of the commodity and can be used as life cycle inventory data in LCA. The calculation employs an input–output LCA method with a global link input–output model that defines a global system boundary grounded in a simplified multiregional input–output framework. As results, the intensities of embodied global environmental burden for 406 Japanese commodities are determined in terms of energy consumption, greenhouse-gas emissions (carbon dioxide, methane, nitrous oxide, perfluorocarbons, hydrofluorocarbons, sulfur hexafluoride, and their summation), and air-pollutant emissions (nitrogen oxide and sulfur oxide). The uncertainties in the intensities of embodied global environmental burden attributable to the simplified structure of the global link input–output model are quantified using Monte Carlo simulation. In addition, by analyzing the structure of the embodied global greenhouse-gas intensities we characterize Japanese commodities in the context of LCA embracing global supply chains. PMID:22881452

Forest product trade impacts of an invasive species: modeling structure and intervention trade-offs

Treesearch

Jeffrey Prestemon; Shushuai Zhu; James A. Turner; Joseph Buongiorno; Ruhong Li

2006-01-01

Asian gypsy and nun moth introductions into the United States, possibly arriving on imported Siberian coniferous logs, threaten domestic forests and product markers and could have global market consequences. We simulate, using the Global Forest Products Model (a spatial equilibrium model of the world forest sector), the consequences under current policies of a...

Numerical Characterization of a Composite Bonded Wing-Box

NASA Technical Reports Server (NTRS)

Smeltzer, Stanley S., III; Lovejoy, Andrew E.; Satyanarayana, Arunkumar

2008-01-01

The development of composite wing structures has focused on the use of mechanical fasteners to join heavily-loaded areas, while bonded joints have been used only for select locations. The focus of this paper is the examination of the adhesive layer in a generic bonded wing box that represents a "fastenerless" or unitized structure in order to characterize the general behavior and failure mechanisms. A global/local approach was applied to study the response of the adhesive layer using a global shell model and a local shell/solid model. The wing box was analyzed under load to represent a high-g up-bending condition such that the strains in the composite sandwich face sheets are comparable to an expected design allowable. The global/local analysis indicates that at these wing load levels the strains in the adhesive layer are well within the adhesive's elastic region, such that yielding would not be expected in the adhesive layer. The global/local methodology appears to be a promising approach to evaluate the structural integrity of the adhesively bonded structures.

A new Method for the Estimation of Initial Condition Uncertainty Structures in Mesoscale Models

NASA Astrophysics Data System (ADS)

Keller, J. D.; Bach, L.; Hense, A.

2012-12-01

The estimation of fast growing error modes of a system is a key interest of ensemble data assimilation when assessing uncertainty in initial conditions. Over the last two decades three methods (and variations of these methods) have evolved for global numerical weather prediction models: ensemble Kalman filter, singular vectors and breeding of growing modes (or now ensemble transform). While the former incorporates a priori model error information and observation error estimates to determine ensemble initial conditions, the latter two techniques directly address the error structures associated with Lyapunov vectors. However, in global models these structures are mainly associated with transient global wave patterns. When assessing initial condition uncertainty in mesoscale limited area models, several problems regarding the aforementioned techniques arise: (a) additional sources of uncertainty on the smaller scales contribute to the error and (b) error structures from the global scale may quickly move through the model domain (depending on the size of the domain). To address the latter problem, perturbation structures from global models are often included in the mesoscale predictions as perturbed boundary conditions. However, the initial perturbations (when used) are often generated with a variant of an ensemble Kalman filter which does not necessarily focus on the large scale error patterns. In the framework of the European regional reanalysis project of the Hans-Ertel-Center for Weather Research we use a mesoscale model with an implemented nudging data assimilation scheme which does not support ensemble data assimilation at all. In preparation of an ensemble-based regional reanalysis and for the estimation of three-dimensional atmospheric covariance structures, we implemented a new method for the assessment of fast growing error modes for mesoscale limited area models. The so-called self-breeding is development based on the breeding of growing modes technique. Initial perturbations are integrated forward for a short time period and then rescaled and added to the initial state again. Iterating this rapid breeding cycle provides estimates for the initial uncertainty structure (or local Lyapunov vectors) given a specific norm. To avoid that all ensemble perturbations converge towards the leading local Lyapunov vector we apply an ensemble transform variant to orthogonalize the perturbations in the sub-space spanned by the ensemble. By choosing different kind of norms to measure perturbation growth, this technique allows for estimating uncertainty patterns targeted at specific sources of errors (e.g. convection, turbulence). With case study experiments we show applications of the self-breeding method for different sources of uncertainty and different horizontal scales.

A remote sensing based vegetation classification logic for global land cover analysis

USGS Publications Warehouse

Running, Steven W.; Loveland, Thomas R.; Pierce, Lars L.; Nemani, R.R.; Hunt, E. Raymond

1995-01-01

This article proposes a simple new logic for classifying global vegetation. The critical features of this classification are that 1) it is based on simple, observable, unambiguous characteristics of vegetation structure that are important to ecosystem biogeochemistry and can be measured in the field for validation, 2) the structural characteristics are remotely sensible so that repeatable and efficient global reclassifications of existing vegetation will be possible, and 3) the defined vegetation classes directly translate into the biophysical parameters of interest by global climate and biogeochemical models. A first test of this logic for the continental United States is presented based on an existing 1 km AVHRR normalized difference vegetation index database. Procedures for solving critical remote sensing problems needed to implement the classification are discussed. Also, some inferences from this classification to advanced vegetation biophysical variables such as specific leaf area and photosynthetic capacity useful to global biogeochemical modeling are suggested.

Developing a global mixed-canopy, height-variable vegetation structure dataset for estimating global vegetation albedo by a clumped canopy radiative transfer scheme in the NASA Ent Terrestrial Biosphere Model and GISS GCM

NASA Astrophysics Data System (ADS)

Montes, Carlo; Kiang, Nancy Y.; Ni-Meister, Wenge; Yang, Wenze; Schaaf, Crystal; Aleinov, Igor; Jonas, Jeffrey A.; Zhao, Feng; Yao, Tian; Wang, Zhuosen; Sun, Qingsong; Carrer, Dominique

2016-04-01

Processes determining biosphere-atmosphere coupling are strongly influenced by vegetation structure. Thus, ecosystem carbon sequestration and evapotranspiration affecting global carbon and water balances will depend upon the spatial extent of vegetation, its vertical structure, and its physiological variability. To represent this globally, Dynamic Global Vegetation Models (DGVMs) coupled to General Circulation Models (GCMs) make use of satellite and/or model-based vegetation classifications often composed by homogeneous communities. This work aims at developing a new Global Vegetation Structure Dataset (GVSD) by incorporating varying vegetation heights for mixed plant communities to be used as boundary conditions to the Analytical Clumped Two-Stream (ACTS) canopy radiative transfer scheme (Ni-Meister et al., 2010) incorporated into the NASA Ent Terrestrial Biosphere Model (TBM), the DGVM coupled to the NASA Goddard Institute for Space Studies (GISS) GCM. Information sources about land surface and vegetation characteristics obtained from a number of earth observation platforms and algorithms include the Moderate Resolution Imaging Spectroradiometer (MODIS) land cover and plant functional types (PFTs) (Friedl et al., 2010), soil albedo derived from MODIS (Carrer et al., 2014), along with vegetation height from the Geoscience Laser Altimeter System (GLAS) on board ICESat (Ice, Cloud, and land Elevation Satellite) (Simard et al., 2011; Tang et al., 2014). Three widely used Leaf Area Index (LAI) products are compared as input to the GVSD and ACTS forcing in terms of vegetation albedo: Global Data Sets of Vegetation (LAI)3g (Zhu et al. 2013), Beijing Normal University LAI (Yuan et al., 2011), and MODIS MOD15A2H product (Yang et al., 2006). Further PFT partitioning is performed according to a climate classification utilizing the Climate Research Unit (CRU; Harris et al., 2013) and the NOAA Global Precipitation Climatology Centre (GPCC; Scheider et al., 2014) data. Final products are a GVSD consisting of mixed plant communities (e.g. mixed forests, savannas, mixed PFTs) following the Ecosystem Demography model (Moorcroft et al., 2001) approach represented by multi-cohort community patches at the sub-grid level of the GCM, which are ensembles of identical individuals whose differences are represented by PFTs, canopy height, density and vegetation structure sensitivity to allometric parameters. The performance of the Ent TBM in estimating VIS-NIR vegetation albedo by the new GVSD and ACTS is assessed first by comparison against the previous GISS GCM vegetation classification and prescribed Lambertian albedoes of Matthews (1984), and secondly, against MODIS global estimations and FLUXNET site-scale observations. Ultimately, this GVSD will serve as a template for community data sets, and be used as boundary conditions to the Ent TBM for prediction of biomass, carbon balances and GISS GCM climate.

Global sensitivity analysis for fuzzy inputs based on the decomposition of fuzzy output entropy

NASA Astrophysics Data System (ADS)

Shi, Yan; Lu, Zhenzhou; Zhou, Yicheng

2018-06-01

To analyse the component of fuzzy output entropy, a decomposition method of fuzzy output entropy is first presented. After the decomposition of fuzzy output entropy, the total fuzzy output entropy can be expressed as the sum of the component fuzzy entropy contributed by fuzzy inputs. Based on the decomposition of fuzzy output entropy, a new global sensitivity analysis model is established for measuring the effects of uncertainties of fuzzy inputs on the output. The global sensitivity analysis model can not only tell the importance of fuzzy inputs but also simultaneously reflect the structural composition of the response function to a certain degree. Several examples illustrate the validity of the proposed global sensitivity analysis, which is a significant reference in engineering design and optimization of structural systems.

Comparison of modeling approaches for carbon partitioning: Impact on estimates of global net primary production and equilibrium biomass of woody vegetation from MODIS GPP

NASA Astrophysics Data System (ADS)

Ise, Takeshi; Litton, Creighton M.; Giardina, Christian P.; Ito, Akihiko

2010-12-01

Partitioning of gross primary production (GPP) to aboveground versus belowground, to growth versus respiration, and to short versus long-lived tissues exerts a strong influence on ecosystem structure and function, with potentially large implications for the global carbon budget. A recent meta-analysis of forest ecosystems suggests that carbon partitioning to leaves, stems, and roots varies consistently with GPP and that the ratio of net primary production (NPP) to GPP is conservative across environmental gradients. To examine influences of carbon partitioning schemes employed by global ecosystem models, we used this meta-analysis-based model and a satellite-based (MODIS) terrestrial GPP data set to estimate global woody NPP and equilibrium biomass, and then compared it to two process-based ecosystem models (Biome-BGC and VISIT) using the same GPP data set. We hypothesized that different carbon partitioning schemes would result in large differences in global estimates of woody NPP and equilibrium biomass. Woody NPP estimated by Biome-BGC and VISIT was 25% and 29% higher than the meta-analysis-based model for boreal forests, with smaller differences in temperate and tropics. Global equilibrium woody biomass, calculated from model-specific NPP estimates and a single set of tissue turnover rates, was 48 and 226 Pg C higher for Biome-BGC and VISIT compared to the meta-analysis-based model, reflecting differences in carbon partitioning to structural versus metabolically active tissues. In summary, we found that different carbon partitioning schemes resulted in large variations in estimates of global woody carbon flux and storage, indicating that stand-level controls on carbon partitioning are not yet accurately represented in ecosystem models.

System for the Analysis of Global Energy Markets - Vol. II, Model Documentation

EIA Publications

2003-01-01

The second volume provides a data implementation guide that lists all naming conventions and model constraints. In addition, Volume 1 has two appendixes that provide a schematic of the System for the Analysis of Global Energy Markets (SAGE) structure and a listing of the source code, respectively.

Sphalerons in composite and nonstandard Higgs models

NASA Astrophysics Data System (ADS)

Spannowsky, Michael; Tamarit, Carlos

2017-01-01

After the discovery of the Higgs boson and the rather precise measurement of all electroweak boson's masses the local structure of the electroweak symmetry breaking potential is already quite well established. However, despite being a key ingredient to a fundamental understanding of the underlying mechanism of electroweak symmetry breaking, the global structure of the electroweak potential remains entirely unknown. The existence of sphalerons, unstable solutions of the classical action of motion that are interpolating between topologically distinct vacua, is a direct consequence of the Standard Model's SU (2 )L gauge group. Nevertheless, the sphaleron energy depends on the shape of the Higgs potential away from the minimum and can therefore be a litmus test for its global structure. Focusing on two scenarios, the minimal composite Higgs model SO (5 )/SO (4 ) or an elementary Higgs with a deformed electroweak potential, we calculate the change of the sphaleron energy compared to the Standard Model prediction. We find that the sphaleron energy would have to be measured to O (10 )% accuracy to exclude sizeable global deviations from the Standard Model Higgs potential. We further find that because of the periodicity of the scalar potential in composite Higgs models a second sphaleron branch with larger energy arises.

The Sensitivity of Glacial Isostatic Adjustment in West Antarctica to Lateral Variations in Earth Structure

NASA Astrophysics Data System (ADS)

Nield, G.; Whitehouse, P. L.; Blank, B.; van der Wal, W.; O'Donnell, J. P.; Stuart, G. W.; Lloyd, A. J.; Wiens, D.

2017-12-01

Accurate models of Glacial Isostatic Adjustment (GIA) are required for correcting satellite measurements of ice-mass change and for interpretation of geodetic data at the location of present and former ice sheets. Global models of GIA tend to adopt a 1-D representation of Earth structure, varying in the radial direction only. In some regions rheological parameters may differ significantly from this global average leading to bias in model predictions of present-day deformation, geoid change rates and sea-level change. The advancement of 3-D GIA modelling techniques in recent years has led to improvements in the representation of the Earth via the incorporation of laterally varying structure. This study investigates the influence of 3-D Earth structure on deformation rates in West Antarctica using a finite element GIA model with power-law rheology. We utilise datasets of seismic velocity and temperature for the crust and upper mantle with the aim of determining a data-driven Earth model, and consider the differences when compared to deformation predicted from an equivalent 1-D Earth structure.

Structural Analysis of the Redesigned Ice/Frost Ramp Bracket

NASA Technical Reports Server (NTRS)

Phillips, D. R.; Dawicke, D. S.; Gentz, S. J.; Roberts, P. W.; Raju, I. S.

2007-01-01

This paper describes the interim structural analysis of a redesigned Ice/Frost Ramp bracket for the Space Shuttle External Tank (ET). The proposed redesigned bracket consists of mounts for attachment to the ET wall, supports for the electronic/instrument cables and propellant repressurization lines that run along the ET, an upper plate, a lower plate, and complex bolted connections. The eight nominal bolted connections are considered critical in the summarized structural analysis. Each bolted connection contains a bolt, a nut, four washers, and a non-metallic spacer and block that are designed for thermal insulation. A three-dimensional (3D) finite element model of the bracket is developed using solid 10-node tetrahedral elements. The loading provided by the ET Project is used in the analysis. Because of the complexities associated with accurately modeling the bolted connections in the bracket, the analysis is performed using a global/local analysis procedure. The finite element analysis of the bracket identifies one of the eight bolted connections as having high stress concentrations. A local area of the bracket surrounding this bolted connection is extracted from the global model and used as a local model. Within the local model, the various components of the bolted connection are refined, and contact is introduced along the appropriate interfaces determined by the analysts. The deformations from the global model are applied as boundary conditions to the local model. The results from the global/local analysis show that while the stresses in the bolts are well within yield, the spacers fail due to compression. The primary objective of the interim structural analysis is to show concept viability for static thermal testing. The proposed design concept would undergo continued design optimization to address the identified analytical assumptions and concept shortcomings, assuming successful thermal testing.

Cosmological backreaction within the Szekeres model and emergence of spatial curvature

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bolejko, Krzysztof, E-mail: krzysztof.bolejko@sydney.edu.au

This paper discusses the phenomenon of backreaction within the Szekeres model. Cosmological backreaction describes how the mean global evolution of the Universe deviates from the Friedmannian evolution. The analysis is based on models of a single cosmological environment and the global ensemble of the Szekeres models (of the Swiss-Cheese-type and Styrofoam-type). The obtained results show that non-linear growth of cosmic structures is associated with the growth of the spatial curvature Ω{sub R} (in the FLRW limit Ω{sub R} → Ω {sub k} ). If averaged over global scales the result depends on the assumed global model of the Universe. Withinmore » the Swiss-Cheese model, which does have a fixed background, the volume average follows the evolution of the background, and the global spatial curvature averages out to zero (the background model is the ΛCDM model, which is spatially flat). In the Styrofoam-type model, which does not have a fixed background, the mean evolution deviates from the spatially flat ΛCDM model, and the mean spatial curvature evolves from Ω{sub R} =0 at the CMB to Ω{sub R} ∼ 0.1 at 0 z =. If the Styrofoam-type model correctly captures evolutionary features of the real Universe then one should expect that in our Universe, the spatial curvature should build up (local growth of cosmic structures) and its mean global average should deviate from zero (backreaction). As a result, this paper predicts that the low-redshift Universe should not be spatially flat (i.e. Ω {sub k} ≠ 0, even if in the early Universe Ω {sub k} = 0) and therefore when analysing low- z cosmological data one should keep Ω {sub k} as a free parameter and independent from the CMB constraints.« less

Cosmological backreaction within the Szekeres model and emergence of spatial curvature

NASA Astrophysics Data System (ADS)

Bolejko, Krzysztof

2017-06-01

This paper discusses the phenomenon of backreaction within the Szekeres model. Cosmological backreaction describes how the mean global evolution of the Universe deviates from the Friedmannian evolution. The analysis is based on models of a single cosmological environment and the global ensemble of the Szekeres models (of the Swiss-Cheese-type and Styrofoam-type). The obtained results show that non-linear growth of cosmic structures is associated with the growth of the spatial curvature ΩScript R (in the FLRW limit ΩScript R → Ωk). If averaged over global scales the result depends on the assumed global model of the Universe. Within the Swiss-Cheese model, which does have a fixed background, the volume average follows the evolution of the background, and the global spatial curvature averages out to zero (the background model is the ΛCDM model, which is spatially flat). In the Styrofoam-type model, which does not have a fixed background, the mean evolution deviates from the spatially flat ΛCDM model, and the mean spatial curvature evolves from ΩScript R =0 at the CMB to ΩScript R ~ 0.1 at 0z =. If the Styrofoam-type model correctly captures evolutionary features of the real Universe then one should expect that in our Universe, the spatial curvature should build up (local growth of cosmic structures) and its mean global average should deviate from zero (backreaction). As a result, this paper predicts that the low-redshift Universe should not be spatially flat (i.e. Ωk ≠ 0, even if in the early Universe Ωk = 0) and therefore when analysing low-z cosmological data one should keep Ωk as a free parameter and independent from the CMB constraints.

Lattice-cell orientation disorder in complex spinel oxides

DOE PAGES

Chen, Yan; Cheng, Yongqiang; Li, Juchuan; ...

2016-11-07

Transition metal (TM) substitution has been widely applied to change complex oxides crystal structures to create high energy density electrodes materials in high performance rechargeable lithium-ion batteries. The complex local structure in the oxides imparted by the TM arrangement often impacts their electrochemical behaviors by influencing the diffusion and intercalation of lithium. Here, a major discrepancy is demonstrated between the global and local structures of the promising high energy density and high voltage LiNi 0.5Mn 1.5O 4 spinel cathode material that contradicts the existing structural models. A new single-phase lattice-cell orientation disorder model is proposed as the mechanism for themore » local ordering that explains how the inhomogeneous local distortions and the coherent connection give rise to the global structure in the complex oxide. As a result, the single-phase model is consistent with the electrochemical behavior observation of the materials.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Yan; Cheng, Yongqiang; Li, Juchuan

Transition metal (TM) substitution has been widely applied to change complex oxides crystal structures to create high energy density electrodes materials in high performance rechargeable lithium-ion batteries. The complex local structure in the oxides imparted by the TM arrangement often impacts their electrochemical behaviors by influencing the diffusion and intercalation of lithium. Here, a major discrepancy is demonstrated between the global and local structures of the promising high energy density and high voltage LiNi 0.5Mn 1.5O 4 spinel cathode material that contradicts the existing structural models. A new single-phase lattice-cell orientation disorder model is proposed as the mechanism for themore » local ordering that explains how the inhomogeneous local distortions and the coherent connection give rise to the global structure in the complex oxide. As a result, the single-phase model is consistent with the electrochemical behavior observation of the materials.« less

Estimation of global structural and transport properties of peptides through the modeling of their CZE mobility data.

PubMed

Piaggio, Maria V; Peirotti, Marta B; Deiber, Julio A

2010-08-01

Peptide electrophoretic mobility data are interpreted through a physicochemical CZE model, providing estimates of the equivalent hydrodynamic radius, hydration, effective and total charge numbers, actual ionizing pK, pH-near molecule and electrical permittivity of peptide domain, among other basic properties. In this study, they are used to estimate some peptide global structural properties proposed, providing thus a distinction among different peptides. Therefore, the solvent drag on the peptide is obtained through a characteristic friction power coefficient of the number of amino acid residues, defined from the global chain conformation in solution. As modeling of the effective electrophoretic mobility of peptides is carried out in terms of particle hydrodynamic size and shape coupled to hydration and effective charge, a packing dimension related to chain conformation within the peptide domain may be defined. In addition, the effective and total charge number fractions of peptides provide some clues on the interpretation of chain conformations within the framework of scaling laws. Furthermore, the model estimates transport properties, such as sedimentation, friction and diffusion coefficients. As the relative numbers of ionizing, polar and non-polar amino acid residues vary in peptides, their global structural properties defined here change appreciably. Needs for further research are also discussed.

How well do terrestrial biosphere models simulate coarse-scale runoff in the contiguous United States?

Treesearch

C.R. Schwalm; D.N. Huntzinger; R.B. Cook; Y. Wei; I.T. Baker; R.P. Neilson; B. Poulter; Peter Caldwell; G. Sun; H.Q. Tian; N. Zeng

2015-01-01

Significant changes in the water cycle are expected under current global environmental change. Robust assessment of present-day water cycle dynamics at continental to global scales is confounded by shortcomings in the observed record. Modeled assessments also yield conflicting results which are linked to differences in model structure and simulation protocol. Here we...

A Parallel Icosahedral, Higher Order Discontinuous Galerkin, Global Shallow Water Model: Global Ocean Tides and Aquaplanet Benchmarks

NASA Astrophysics Data System (ADS)

Salehipour, H.; Stuhne, G.; Peltier, W. R.

2012-12-01

The development of models of the ocean tides with higher resolution near the coastlines and courser mesh offshore, has been required due to the significant impacts of coastline configuration and bathymetry (associated with sea level rise) on the amplitude and phase of tidal constituents, not only under present conditions but also in the deep past [Griffiths and Peltier GRL 2008, Griffiths and Peltier AMS 2009, Hill et al. JGR 2011]. A global tidal model with enhanced resolution at the poles has been developed by Griffiths and Peltier [2008, 2009], which, although capable of highly resolving polar ocean tides , is based upon a standard structured Arakawa C grid and hence is not capable of resolving coastlines locally. Furthermore the use of a nested modelling approach, although it may enable local spatial refinement [Hill et al. 2011], nevertheless suffers from its inherent dependence on the availability of a global tidal model with necessarily low spatial resolution to provide the open boundary conditions required for the local high resolution model. On the other hand, an unstructured triangulation of the global domain provides a standalone framework that may be employed to study highly resolved regions without relying on secondary models. The first step in the development of the structure we are employing was described in Stuhne and Peltier [Ocean Modeling, 2009]. In further extending this modelling structure we are employing a new discontinuous Galerkin (DG) discretization of the governing equations in order to provide very high order of accuracy while also ensuring that momentum transport is locally conserved [Giraldo et al. JCP 2002]. After validating the 2D shallow water model with several test suites appropriate to aquaplanets [Williamson et al. JCP 1992, Galewsky et al. Tellus 2004, Nair and Lauritzen JCP 2010], the governing equations are extended to include the influence of internal tide drag in the deep ocean as well as the drag in shallow marginal seas together with the influence of gravitational self-attraction and loading. In this paper, we will explain the mathematical and numerical framework employed in the development of the DG global tidal model and present the validation results obtained using the present-day satellite altimetry data-constrained TPXO 6.2 global tidal solutions of Egbert et al. [JGR 1994].igure 1. Barotropic Instability Test of Galewsky et al. (Tellus 2004), with 2nd order DG

A structural model decomposition framework for systems health management

NASA Astrophysics Data System (ADS)

Roychoudhury, I.; Daigle, M.; Bregon, A.; Pulido, B.

Systems health management (SHM) is an important set of technologies aimed at increasing system safety and reliability by detecting, isolating, and identifying faults; and predicting when the system reaches end of life (EOL), so that appropriate fault mitigation and recovery actions can be taken. Model-based SHM approaches typically make use of global, monolithic system models for online analysis, which results in a loss of scalability and efficiency for large-scale systems. Improvement in scalability and efficiency can be achieved by decomposing the system model into smaller local submodels and operating on these submodels instead. In this paper, the global system model is analyzed offline and structurally decomposed into local submodels. We define a common model decomposition framework for extracting submodels from the global model. This framework is then used to develop algorithms for solving model decomposition problems for the design of three separate SHM technologies, namely, estimation (which is useful for fault detection and identification), fault isolation, and EOL prediction. We solve these model decomposition problems using a three-tank system as a case study.

A Structural Model Decomposition Framework for Systems Health Management

NASA Technical Reports Server (NTRS)

Roychoudhury, Indranil; Daigle, Matthew J.; Bregon, Anibal; Pulido, Belamino

2013-01-01

Systems health management (SHM) is an important set of technologies aimed at increasing system safety and reliability by detecting, isolating, and identifying faults; and predicting when the system reaches end of life (EOL), so that appropriate fault mitigation and recovery actions can be taken. Model-based SHM approaches typically make use of global, monolithic system models for online analysis, which results in a loss of scalability and efficiency for large-scale systems. Improvement in scalability and efficiency can be achieved by decomposing the system model into smaller local submodels and operating on these submodels instead. In this paper, the global system model is analyzed offline and structurally decomposed into local submodels. We define a common model decomposition framework for extracting submodels from the global model. This framework is then used to develop algorithms for solving model decomposition problems for the design of three separate SHM technologies, namely, estimation (which is useful for fault detection and identification), fault isolation, and EOL prediction. We solve these model decomposition problems using a three-tank system as a case study.

Extracting the Evaluations of Stereotypes: Bi-factor Model of the Stereotype Content Structure

PubMed Central

Sayans-Jiménez, Pablo; Cuadrado, Isabel; Rojas, Antonio J.; Barrada, Juan R.

2017-01-01

Stereotype dimensions—competence, morality and sociability—are fundamental to studying the perception of other groups. These dimensions have shown moderate/high positive correlations with each other that do not reflect the theoretical expectations. The explanation for this (e.g., halo effect) undervalues the utility of the shared variance identified. In contrast, in this work we propose that this common variance could represent the global evaluation of the perceived group. Bi-factor models are proposed to improve the internal structure and to take advantage of the information representing the shared variance among dimensions. Bi-factor models were compared with first order models and other alternative models in three large samples (300–309 participants). The relationships among the global and specific bi-factor dimensions with a global evaluation dimension (measured through a semantic differential) were estimated. The results support the use of bi-factor models rather than first order models (and other alternative models). Bi-factor models also show a greater utility to directly and more easily explore the stereotype content including its evaluative content. PMID:29085313

Modeling global vector fields of chaotic systems from noisy time series with the aid of structure-selection techniques.

PubMed

Xu, Daolin; Lu, Fangfang

2006-12-01

We address the problem of reconstructing a set of nonlinear differential equations from chaotic time series. A method that combines the implicit Adams integration and the structure-selection technique of an error reduction ratio is proposed for system identification and corresponding parameter estimation of the model. The structure-selection technique identifies the significant terms from a pool of candidates of functional basis and determines the optimal model through orthogonal characteristics on data. The technique with the Adams integration algorithm makes the reconstruction available to data sampled with large time intervals. Numerical experiment on Lorenz and Rossler systems shows that the proposed strategy is effective in global vector field reconstruction from noisy time series.

A Global Upper-Mantle Tomographic Model of Shear Attenuation

NASA Astrophysics Data System (ADS)

Karaoglu, H.; Romanowicz, B. A.

2016-12-01

Mapping anelastic 3D structure within the earth's mantle is key to understanding present day mantle dynamics, as it provides complementary constraints to those obtained from elastic structure, with the potential to distinguish between thermal and compositional heterogeneity. For this, we need to measure seismic wave amplitudes, which are sensitive to both elastic (through focusing and scattering) and anelastic structure. The elastic effects are less pronounced at long periods, so previous global upper-mantle attenuation models are based on teleseismic surface wave data, sometimes including overtones. In these studies, elastic effects are considered either indirectly, by eliminating data strongly contaminated by them (e.g. Romanowicz, 1995; Gung and Romanowicz, 2004), or by correcting for elastic focusing effects using an approximate linear approach (Dalton et al., 2008). Additionally, in these studies, the elastic structure is held fixed when inverting for intrinsic attenuation . The importance of (1) having a good starting elastic model, (2) accurate modeling of the seismic wavefield and (3) joint inversion for elastic and anelastic structure, becomes more evident as the targeted resolution level increases. Also, velocity dispersion effects due to anelasticity need to be taken into account. Here, we employ a hybrid full waveform inversion method, inverting jointly for global elastic and anelastic upper mantle structure, starting from the latest global 3D shear velocity model built by our group (French and Romanowicz, 2014), using the spectral element method for the forward waveform modeling (Capdeville et al., 2003), and normal-mode perturbation theory (NACT - Li and Romanowicz, 1995) for kernel computations. We present a 3D upper-mantle anelastic model built by using three component fundamental and overtone surface waveforms down to 60 s as well as long period body waveforms down to 30 s. We also include source and site effects to first order as frequency independent scalar factors. The robustness of the inversion method is assessed through synthetic and resolution tests. We discuss salient features of the resulting anelastic model and in particular the well-resolved strong correlation with tectonics observed in the first 200 km of the mantle.

Global and Local Stress Analyses of McDonnell Douglas Stitched/RFI Composite Wing Stub Box

NASA Technical Reports Server (NTRS)

Wang, John T.

1996-01-01

This report contains results of structural analyses performed in support of the NASA structural testing of an all-composite stitched/RFI (resin film infusion) wing stub box. McDonnell Douglas Aerospace Company designed and fabricated the wing stub box. The analyses used a global/local approach. The global model contains the entire test article. It includes the all-composite stub box, a metallic load-transition box and a metallic wing-tip extension box. The two metallic boxes are connected to the inboard and outboard ends of the composite wing stub box, respectively. The load-transition box was attached to a steel and concrete vertical reaction structure and a load was applied at the tip of the extension box to bend the wing stub box upward. The local model contains an upper cover region surrounding three stringer runouts. In that region, a large nonlinear deformation was identified by the global analyses. A more detailed mesh was used for the local model to obtain more accurate analysis results near stringer runouts. Numerous analysis results such as deformed shapes, displacements at selected locations, and strains at critical locations are included in this report.

Mixture models for protein structure ensembles.

PubMed

Hirsch, Michael; Habeck, Michael

2008-10-01

Protein structure ensembles provide important insight into the dynamics and function of a protein and contain information that is not captured with a single static structure. However, it is not clear a priori to what extent the variability within an ensemble is caused by internal structural changes. Additional variability results from overall translations and rotations of the molecule. And most experimental data do not provide information to relate the structures to a common reference frame. To report meaningful values of intrinsic dynamics, structural precision, conformational entropy, etc., it is therefore important to disentangle local from global conformational heterogeneity. We consider the task of disentangling local from global heterogeneity as an inference problem. We use probabilistic methods to infer from the protein ensemble missing information on reference frames and stable conformational sub-states. To this end, we model a protein ensemble as a mixture of Gaussian probability distributions of either entire conformations or structural segments. We learn these models from a protein ensemble using the expectation-maximization algorithm. Our first model can be used to find multiple conformers in a structure ensemble. The second model partitions the protein chain into locally stable structural segments or core elements and less structured regions typically found in loops. Both models are simple to implement and contain only a single free parameter: the number of conformers or structural segments. Our models can be used to analyse experimental ensembles, molecular dynamics trajectories and conformational change in proteins. The Python source code for protein ensemble analysis is available from the authors upon request.

Crustal Structure of Mars from Mars Global Surveyor Topography and Gravity

NASA Technical Reports Server (NTRS)

Zuber, M. T.; Solomon, S. C.; Phillips, R. J.; Smith, D. E.; Tyler, G. L.; Aharonson, O.; Balmino, G.; Banerdt, W. B.; Head, J. W.; Johnson, C. L.

2000-01-01

In this analysis we invert global models of Mars' topography from Mars Orbiter Laser Altimeter (MOLA) and gravity from Doppler tracking obtained during the mapping mission of Mars Global Surveyor (MGS). We analyze the distribution of Martian crust and discuss implications for Mars' thermal history.

Time series modelling of global mean temperature for managerial decision-making.

PubMed

Romilly, Peter

2005-07-01

Climate change has important implications for business and economic activity. Effective management of climate change impacts will depend on the availability of accurate and cost-effective forecasts. This paper uses univariate time series techniques to model the properties of a global mean temperature dataset in order to develop a parsimonious forecasting model for managerial decision-making over the short-term horizon. Although the model is estimated on global temperature data, the methodology could also be applied to temperature data at more localised levels. The statistical techniques include seasonal and non-seasonal unit root testing with and without structural breaks, as well as ARIMA and GARCH modelling. A forecasting evaluation shows that the chosen model performs well against rival models. The estimation results confirm the findings of a number of previous studies, namely that global mean temperatures increased significantly throughout the 20th century. The use of GARCH modelling also shows the presence of volatility clustering in the temperature data, and a positive association between volatility and global mean temperature.

User Selection Criteria of Airspace Designs in Flexible Airspace Management

NASA Technical Reports Server (NTRS)

Lee, Hwasoo E.; Lee, Paul U.; Jung, Jaewoo; Lai, Chok Fung

2011-01-01

A method for identifying global aerodynamic models from flight data in an efficient manner is explained and demonstrated. A novel experiment design technique was used to obtain dynamic flight data over a range of flight conditions with a single flight maneuver. Multivariate polynomials and polynomial splines were used with orthogonalization techniques and statistical modeling metrics to synthesize global nonlinear aerodynamic models directly and completely from flight data alone. Simulation data and flight data from a subscale twin-engine jet transport aircraft were used to demonstrate the techniques. Results showed that global multivariate nonlinear aerodynamic dependencies could be accurately identified using flight data from a single maneuver. Flight-derived global aerodynamic model structures, model parameter estimates, and associated uncertainties were provided for all six nondimensional force and moment coefficients for the test aircraft. These models were combined with a propulsion model identified from engine ground test data to produce a high-fidelity nonlinear flight simulation very efficiently. Prediction testing using a multi-axis maneuver showed that the identified global model accurately predicted aircraft responses.

Carbon residence time dominates uncertainty in terrestrial vegetation responses to future climate and atmospheric CO2.

PubMed

Friend, Andrew D; Lucht, Wolfgang; Rademacher, Tim T; Keribin, Rozenn; Betts, Richard; Cadule, Patricia; Ciais, Philippe; Clark, Douglas B; Dankers, Rutger; Falloon, Pete D; Ito, Akihiko; Kahana, Ron; Kleidon, Axel; Lomas, Mark R; Nishina, Kazuya; Ostberg, Sebastian; Pavlick, Ryan; Peylin, Philippe; Schaphoff, Sibyll; Vuichard, Nicolas; Warszawski, Lila; Wiltshire, Andy; Woodward, F Ian

2014-03-04

Future climate change and increasing atmospheric CO2 are expected to cause major changes in vegetation structure and function over large fractions of the global land surface. Seven global vegetation models are used to analyze possible responses to future climate simulated by a range of general circulation models run under all four representative concentration pathway scenarios of changing concentrations of greenhouse gases. All 110 simulations predict an increase in global vegetation carbon to 2100, but with substantial variation between vegetation models. For example, at 4 °C of global land surface warming (510-758 ppm of CO2), vegetation carbon increases by 52-477 Pg C (224 Pg C mean), mainly due to CO2 fertilization of photosynthesis. Simulations agree on large regional increases across much of the boreal forest, western Amazonia, central Africa, western China, and southeast Asia, with reductions across southwestern North America, central South America, southern Mediterranean areas, southwestern Africa, and southwestern Australia. Four vegetation models display discontinuities across 4 °C of warming, indicating global thresholds in the balance of positive and negative influences on productivity and biomass. In contrast to previous global vegetation model studies, we emphasize the importance of uncertainties in projected changes in carbon residence times. We find, when all seven models are considered for one representative concentration pathway × general circulation model combination, such uncertainties explain 30% more variation in modeled vegetation carbon change than responses of net primary productivity alone, increasing to 151% for non-HYBRID4 models. A change in research priorities away from production and toward structural dynamics and demographic processes is recommended.

Carbon residence time dominates uncertainty in terrestrial vegetation responses to future climate and atmospheric CO2

PubMed Central

Friend, Andrew D.; Lucht, Wolfgang; Rademacher, Tim T.; Keribin, Rozenn; Betts, Richard; Cadule, Patricia; Ciais, Philippe; Clark, Douglas B.; Dankers, Rutger; Falloon, Pete D.; Ito, Akihiko; Kahana, Ron; Kleidon, Axel; Lomas, Mark R.; Nishina, Kazuya; Ostberg, Sebastian; Pavlick, Ryan; Peylin, Philippe; Schaphoff, Sibyll; Vuichard, Nicolas; Warszawski, Lila; Wiltshire, Andy; Woodward, F. Ian

2014-01-01

Future climate change and increasing atmospheric CO2 are expected to cause major changes in vegetation structure and function over large fractions of the global land surface. Seven global vegetation models are used to analyze possible responses to future climate simulated by a range of general circulation models run under all four representative concentration pathway scenarios of changing concentrations of greenhouse gases. All 110 simulations predict an increase in global vegetation carbon to 2100, but with substantial variation between vegetation models. For example, at 4 °C of global land surface warming (510–758 ppm of CO2), vegetation carbon increases by 52–477 Pg C (224 Pg C mean), mainly due to CO2 fertilization of photosynthesis. Simulations agree on large regional increases across much of the boreal forest, western Amazonia, central Africa, western China, and southeast Asia, with reductions across southwestern North America, central South America, southern Mediterranean areas, southwestern Africa, and southwestern Australia. Four vegetation models display discontinuities across 4 °C of warming, indicating global thresholds in the balance of positive and negative influences on productivity and biomass. In contrast to previous global vegetation model studies, we emphasize the importance of uncertainties in projected changes in carbon residence times. We find, when all seven models are considered for one representative concentration pathway × general circulation model combination, such uncertainties explain 30% more variation in modeled vegetation carbon change than responses of net primary productivity alone, increasing to 151% for non-HYBRID4 models. A change in research priorities away from production and toward structural dynamics and demographic processes is recommended. PMID:24344265

Structural empowerment and burnout among Portuguese nursing staff: An explicative model.

PubMed

Orgambídez-Ramos, Alejandro; Borrego-Alés, Yolanda; Vázquez-Aguado, Octavio; March-Amegual, Jaume

2017-11-01

Kanter's structural empowerment model was used to assess the influence of access to opportunities, resources, information and support on core burnout through global empowerment in a nursing sample in Portugal. The empowerment experience increases the levels of nursing professionals' satisfaction and performance preventing the emergence of burnout. However, the relationship between structural empowerment and burnout has been scarcely studied in Portugal. We conducted a cross-sectional correlational study assessing a final sample of 297 participants (62.13% response rate, 63.64% women). Model fit and mediation test were examined using structural equation modelling (path analysis). Access to opportunities and access to support had direct impact, through global empowerment, on core burnout, whereas access to resources had both direct and indirect impact on core burnout. The results validated the structural empowerment model and its application in nursing staff in Portugal. Professional training plans, the development of formal and informal support networks, and the availability of resources increase the levels of empowerment and decrease the likelihood of experiencing burnout in nursing professionals. © 2017 John Wiley & Sons Ltd.

The integration of palaeogeography and tectonics in refining plate tectonic models: an example from SE Asia

NASA Astrophysics Data System (ADS)

Masterton, S. M.; Markwick, P.; Bailiff, R.; Campanile, D.; Edgecombe, E.; Eue, D.; Galsworthy, A.; Wilson, K.

2012-04-01

Our understanding of lithospheric evolution and global plate motions throughout the Earth's history is based largely upon detailed knowledge of plate boundary structures, inferences about tectonic regimes, ocean isochrons and palaeomagnetic data. Most currently available plate models are either regionally restricted or do not consider palaeogeographies in their construction. Here, we present an integrated methodology in which derived hypotheses have been further refined using global and regional palaeogeographic, palaeotopological and palaeobathymetric maps. Iteration between our self-consistent and structurally constrained global plate model and palaeogeographic interpretations which are built on these reconstructions, allows for greater testing and refinement of results. Our initial structural and tectonic interpretations are based largely on analysis of our extensive global database of gravity and magnetic potential field data, and are further constrained by seismic, SRTM and Landsat data. This has been used as the basis for detailed interpretations that have allowed us to compile a new global map and database of structures, crustal types, plate boundaries and basin definitions. Our structural database is used in the identification of major tectonic terranes and their relative motions, from which we have developed our global plate model. It is subject to an ongoing process of regional evaluation and revisions in an effort to incorporate and reflect new tectonic and geologic interpretations. A major element of this programme is the extension of our existing plate model (GETECH Global Plate Model V1) back to the Neoproterozic. Our plate model forms the critical framework upon which palaeogeographic and palaeotopographic reconstructions have been made for every time stage in the Cretaceous and Cenozoic. Generating palaeogeographies involves integration of a variety of data, such as regional geology, palaeoclimate analyses, lithology, sea-level estimates, thermo-mechanical events and regional tectonics. These data are interpreted to constrain depositional systems and tectonophysiographic terranes. Palaeotopography and palaeobathymetry are derived from these tectonophysiographic terranes and depositional systems, and are further constrained using geological relationships, thermochronometric data, palaeoaltimetry indicators and modern analogues. Throughout this process, our plate model is iteratively tested against our palaeogeographies and their environmental consequences. Both the plate model and the palaeogeographies are refined until we have obtained a consistent and scientifically robust result. In this presentation we show an example from Southeast Asia, where the plate model complexity and wide variation in hypotheses has huge implications for the palaeogeographic interpretation, which can then be tested using geological observations from well and seismic data. For example, the Khorat Plateau Basin, Northeastern Thailand, comprises a succession of fluvial clastics during the Cretaceous, which include the evaporites of the Maha Sarakham Formation. These have been variously interpreted as indicative of saline lake or marine incursion depositional environments. We show how the feasibility of these different hypotheses is dependent on the regional palaeogeography (whether a marine link is possible), which in turn depends on the underlying plate model. We show two models with widely different environmental consequences. A more robust model that takes into account all these consequences, as well as data, can be defined by iterating through the consequences of the plate model and geological observations.

The epidemic spreading model and the direction of information flow in brain networks.

PubMed

Meier, J; Zhou, X; Hillebrand, A; Tewarie, P; Stam, C J; Van Mieghem, P

2017-05-15

The interplay between structural connections and emerging information flow in the human brain remains an open research problem. A recent study observed global patterns of directional information flow in empirical data using the measure of transfer entropy. For higher frequency bands, the overall direction of information flow was from posterior to anterior regions whereas an anterior-to-posterior pattern was observed in lower frequency bands. In this study, we applied a simple Susceptible-Infected-Susceptible (SIS) epidemic spreading model on the human connectome with the aim to reveal the topological properties of the structural network that give rise to these global patterns. We found that direct structural connections induced higher transfer entropy between two brain regions and that transfer entropy decreased with increasing distance between nodes (in terms of hops in the structural network). Applying the SIS model, we were able to confirm the empirically observed opposite information flow patterns and posterior hubs in the structural network seem to play a dominant role in the network dynamics. For small time scales, when these hubs acted as strong receivers of information, the global pattern of information flow was in the posterior-to-anterior direction and in the opposite direction when they were strong senders. Our analysis suggests that these global patterns of directional information flow are the result of an unequal spatial distribution of the structural degree between posterior and anterior regions and their directions seem to be linked to different time scales of the spreading process. Copyright © 2017 Elsevier Inc. All rights reserved.

A comparative study of theoretical graph models for characterizing structural networks of human brain.

PubMed

Li, Xiaojin; Hu, Xintao; Jin, Changfeng; Han, Junwei; Liu, Tianming; Guo, Lei; Hao, Wei; Li, Lingjiang

2013-01-01

Previous studies have investigated both structural and functional brain networks via graph-theoretical methods. However, there is an important issue that has not been adequately discussed before: what is the optimal theoretical graph model for describing the structural networks of human brain? In this paper, we perform a comparative study to address this problem. Firstly, large-scale cortical regions of interest (ROIs) are localized by recently developed and validated brain reference system named Dense Individualized Common Connectivity-based Cortical Landmarks (DICCCOL) to address the limitations in the identification of the brain network ROIs in previous studies. Then, we construct structural brain networks based on diffusion tensor imaging (DTI) data. Afterwards, the global and local graph properties of the constructed structural brain networks are measured using the state-of-the-art graph analysis algorithms and tools and are further compared with seven popular theoretical graph models. In addition, we compare the topological properties between two graph models, namely, stickiness-index-based model (STICKY) and scale-free gene duplication model (SF-GD), that have higher similarity with the real structural brain networks in terms of global and local graph properties. Our experimental results suggest that among the seven theoretical graph models compared in this study, STICKY and SF-GD models have better performances in characterizing the structural human brain network.

Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models

DOE PAGES

Wieder, William R.; Hartman, Melannie D.; Sulman, Benjamin N.; ...

2017-11-09

Emerging insights into factors responsible for soil organic matter stabilization and decomposition are being applied in a variety of contexts, but new tools are needed to facilitate the understanding, evaluation, and improvement of soil biogeochemical theory and models at regional to global scales. To isolate the effects of model structural uncertainty on the global distribution of soil carbon stocks and turnover times we developed a soil biogeochemical testbed that forces three different soil models with consistent climate and plant productivity inputs. The models tested here include a first-order, microbial implicit approach (CASA-CNP), and two recently developed microbially explicit models thatmore » can be run at global scales (MIMICS and CORPSE). When forced with common environmental drivers, the soil models generated similar estimates of initial soil carbon stocks (roughly 1,400 Pg C globally, 0–100 cm), but each model shows a different functional relationship between mean annual temperature and inferred turnover times. Subsequently, the models made divergent projections about the fate of these soil carbon stocks over the 20th century, with models either gaining or losing over 20 Pg C globally between 1901 and 2010. Single-forcing experiments with changed inputs, tem- perature, and moisture suggest that uncertainty associated with freeze-thaw processes as well as soil textural effects on soil carbon stabilization were larger than direct temper- ature uncertainties among models. Finally, the models generated distinct projections about the timing and magnitude of seasonal heterotrophic respiration rates, again reflecting structural uncertainties that were related to environmental sensitivities and assumptions about physicochemical stabilization of soil organic matter. Here, by providing a computationally tractable and numerically consistent framework to evaluate models we aim to better understand uncertainties among models and generate insights about fac- tors regulating the turnover of soil organic matter.« less

Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wieder, William R.; Hartman, Melannie D.; Sulman, Benjamin N.

Emerging insights into factors responsible for soil organic matter stabilization and decomposition are being applied in a variety of contexts, but new tools are needed to facilitate the understanding, evaluation, and improvement of soil biogeochemical theory and models at regional to global scales. To isolate the effects of model structural uncertainty on the global distribution of soil carbon stocks and turnover times we developed a soil biogeochemical testbed that forces three different soil models with consistent climate and plant productivity inputs. The models tested here include a first-order, microbial implicit approach (CASA-CNP), and two recently developed microbially explicit models thatmore » can be run at global scales (MIMICS and CORPSE). When forced with common environmental drivers, the soil models generated similar estimates of initial soil carbon stocks (roughly 1,400 Pg C globally, 0–100 cm), but each model shows a different functional relationship between mean annual temperature and inferred turnover times. Subsequently, the models made divergent projections about the fate of these soil carbon stocks over the 20th century, with models either gaining or losing over 20 Pg C globally between 1901 and 2010. Single-forcing experiments with changed inputs, tem- perature, and moisture suggest that uncertainty associated with freeze-thaw processes as well as soil textural effects on soil carbon stabilization were larger than direct temper- ature uncertainties among models. Finally, the models generated distinct projections about the timing and magnitude of seasonal heterotrophic respiration rates, again reflecting structural uncertainties that were related to environmental sensitivities and assumptions about physicochemical stabilization of soil organic matter. Here, by providing a computationally tractable and numerically consistent framework to evaluate models we aim to better understand uncertainties among models and generate insights about fac- tors regulating the turnover of soil organic matter.« less

Structural modeling and optimization of a joined-wing configuration of a High-Altitude Long-Endurance (HALE) aircraft

NASA Astrophysics Data System (ADS)

Kaloyanova, Valentina B.

Recent research trends have indicated an interest in High-Altitude, Long-Endurance (HALE) aircraft as a low-cost alternative to certain space missions, such as telecommunication relay, environmental sensing and military reconnaissance. HALE missions require a light vehicle flying at low speed in the stratosphere at altitudes of 60,000-80,000 ft, with a continuous loiter time of up to several days. To provide high lift and low drag at these high altitudes, where the air density is low, the wing area should be increased, i.e., high-aspect-ratio wings are necessary. Due to its large span and lightweight, the wing structure is very flexible. To reduce the structural deformation, and increase the total lift in a long-spanned wing, a sensorcraft model with a joined-wing configuration, proposed by AFRL, is employed. The joined-wing encompasses a forward wing, which is swept back with a positive dihedral angle, and connected with an aft wing, which is swept forward. The joined-wing design combines structural strength, high aerodynamic performance and efficiency. As a first step to study the joined-wing structural behavior an 1-D approximation model is developed. The 1-D approximation is a simple structural model created using ANSYS BEAM4 elements to present a possible approach for the aerodynamics-structure coupling. The pressure loads from the aerodynamic analysis are integrated numerically to obtain the resultant aerodynamic forces and moments (spanwise lift and pitching moment distributions, acting at the aerodynamic center). These are applied on the 1-D structural model. A linear static analysis is performed under this equivalent load, and the deformed shape of the 1-D model is used to obtain the deformed shape of the actual 3-D joined wing, i.e. deformed aerodynamic surface grid. To date in the existing studies, only simplified structural models have been examined. In the present work, in addition to the simple 1-D beam model, a semi-monocoque structural model is developed. All stringers, skin panels, ribs and spars are represented by appropriate elements in a finite-element model. Also, the model accounts for the fuel weight and sensorcraft antennae housed within the wings. Linear and nonlinear static analyses under the aerodynamic load are performed. The stress distribution in the wing as well as deformation is explored. Starting with a structural model with uniform mass distribution, a design optimization is performed to achieve a fully stressed design. As the joined-wing structure is prone to buckling, after the design optimization is complete linear and nonlinear bucking analyses are performed to study the global joined-wing structural instability, the load magnitude at which it is expected to occur, and the buckling mode. The buckled shape of the aft wing (which is subjected to compression) is found to resemble that of a fixed-pinned column. The linear buckling analysis overestimates the buckling load. However, even the nonlinear buckling analysis results in a load factor higher than 3, i.e. the wing structure is buckling safe under its current loading conditions. As the region of the joint has a very complicated geometry that has adverse effects in the flow and stress behavior an independent, more finely meshed model (submodel) of the joint region is generated and analyzed. A detailed discussion of the stress distribution obtained in the joint region via the submodeling technique is presented in this study as well. It is found out that compared to its structural response, the joint adverse effects are much more pronounced in its aerodynamic response, so it is suggested for future studies the geometry of the joint to be optimized based on its aerodynamic performance. As this design and analysis study is aimed towards developing a realistic structural representation of the innovative joined-wing configuration, in addition to the "global", or upper-level optimization, a local level design optimization is performed as well. At the lower (local) level detailed models of wing structural panels are used to compute more complex failure modes and to design the details that are not included in the upper (global) level model. Proper coordination between local skin-stringer panel models and the global joined-wing model prevents inconsistency between the upper- (global) and lower- (local) level design models. (Abstract shortened by UMI.)

International Trade Drives Global Resource Use: A Structural Decomposition Analysis of Raw Material Consumption from 1990-2010.

PubMed

Plank, Barbara; Eisenmenger, Nina; Schaffartzik, Anke; Wiedenhofer, Dominik

2018-04-03

Globalization led to an immense increase of international trade and the emergence of complex global value chains. At the same time, global resource use and pressures on the environment are increasing steadily. With these two processes in parallel, the question arises whether trade contributes positively to resource efficiency, or to the contrary is further driving resource use? In this article, the socioeconomic driving forces of increasing global raw material consumption (RMC) are investigated to assess the role of changing trade relations, extended supply chains and increasing consumption. We apply a structural decomposition analysis of changes in RMC from 1990 to 2010, utilizing the Eora multi-regional input-output (MRIO) model. We find that changes in international trade patterns significantly contributed to an increase of global RMC. Wealthy developed countries play a major role in driving global RMC growth through changes in their trade structures, as they shifted production processes increasingly to less material-efficient input suppliers. Even the dramatic increase in material consumption in the emerging economies has not diminished the role of industrialized countries as drivers of global RMC growth.

Mode structure symmetry breaking of energetic particle driven beta-induced Alfvén eigenmode

NASA Astrophysics Data System (ADS)

Lu, Z. X.; Wang, X.; Lauber, Ph.; Zonca, F.

2018-01-01

The mode structure symmetry breaking of energetic particle driven Beta-induced Alfvén Eigenmode (BAE) is studied based on global theory and simulation. The weak coupling formula gives a reasonable estimate of the local eigenvalue compared with global hybrid simulation using XHMGC. The non-perturbative effect of energetic particles on global mode structure symmetry breaking in radial and parallel (along B) directions is demonstrated. With the contribution from energetic particles, two dimensional (radial and poloidal) BAE mode structures with symmetric/asymmetric tails are produced using an analytical model. It is demonstrated that the symmetry breaking in radial and parallel directions is intimately connected. The effects of mode structure symmetry breaking on nonlinear physics, energetic particle transport, and the possible insight for experimental studies are discussed.

Individualized Gaussian process-based prediction and detection of local and global gray matter abnormalities in elderly subjects.

PubMed

Ziegler, G; Ridgway, G R; Dahnke, R; Gaser, C

2014-08-15

Structural imaging based on MRI is an integral component of the clinical assessment of patients with potential dementia. We here propose an individualized Gaussian process-based inference scheme for clinical decision support in healthy and pathological aging elderly subjects using MRI. The approach aims at quantitative and transparent support for clinicians who aim to detect structural abnormalities in patients at risk of Alzheimer's disease or other types of dementia. Firstly, we introduce a generative model incorporating our knowledge about normative decline of local and global gray matter volume across the brain in elderly. By supposing smooth structural trajectories the models account for the general course of age-related structural decline as well as late-life accelerated loss. Considering healthy subjects' demography and global brain parameters as informative about normal brain aging variability affords individualized predictions in single cases. Using Gaussian process models as a normative reference, we predict new subjects' brain scans and quantify the local gray matter abnormalities in terms of Normative Probability Maps (NPM) and global z-scores. By integrating the observed expectation error and the predictive uncertainty, the local maps and global scores exploit the advantages of Bayesian inference for clinical decisions and provide a valuable extension of diagnostic information about pathological aging. We validate the approach in simulated data and real MRI data. We train the GP framework using 1238 healthy subjects with ages 18-94 years, and predict in 415 independent test subjects diagnosed as healthy controls, Mild Cognitive Impairment and Alzheimer's disease. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

Individualized Gaussian process-based prediction and detection of local and global gray matter abnormalities in elderly subjects

PubMed Central

Ziegler, G.; Ridgway, G.R.; Dahnke, R.; Gaser, C.

2014-01-01

Structural imaging based on MRI is an integral component of the clinical assessment of patients with potential dementia. We here propose an individualized Gaussian process-based inference scheme for clinical decision support in healthy and pathological aging elderly subjects using MRI. The approach aims at quantitative and transparent support for clinicians who aim to detect structural abnormalities in patients at risk of Alzheimer's disease or other types of dementia. Firstly, we introduce a generative model incorporating our knowledge about normative decline of local and global gray matter volume across the brain in elderly. By supposing smooth structural trajectories the models account for the general course of age-related structural decline as well as late-life accelerated loss. Considering healthy subjects' demography and global brain parameters as informative about normal brain aging variability affords individualized predictions in single cases. Using Gaussian process models as a normative reference, we predict new subjects' brain scans and quantify the local gray matter abnormalities in terms of Normative Probability Maps (NPM) and global z-scores. By integrating the observed expectation error and the predictive uncertainty, the local maps and global scores exploit the advantages of Bayesian inference for clinical decisions and provide a valuable extension of diagnostic information about pathological aging. We validate the approach in simulated data and real MRI data. We train the GP framework using 1238 healthy subjects with ages 18–94 years, and predict in 415 independent test subjects diagnosed as healthy controls, Mild Cognitive Impairment and Alzheimer's disease. PMID:24742919

Women's Work Conditions and Marital Adjustment in Two-Earner Couples: A Structural Model.

ERIC Educational Resources Information Center

Sears, Heather A.; Galambos, Nancy L.

1992-01-01

Evaluated structural model of women's work conditions, women's stress, and marital adjustment using path analysis. Findings from 86 2-earner couples with adolescents indicated support for spillover model in which women's work stress and global stress mediated link between their work conditions and their perceptions of marital adjustment.…

Recognition of coarse-grained protein tertiary structure.

PubMed

Lezon, Timothy; Banavar, Jayanth R; Maritan, Amos

2004-05-15

A model of the protein backbone is considered in which each residue is characterized by the location of its C(alpha) atom and one of a discrete set of conformal (phi, psi) states. We investigate the key differences between a description that offers a locally precise fit to known backbone structures and one that provides a globally accurate fit to protein structures. Using a statistical scoring scheme and threading, a protein's local best-fit conformation is highly recognizable, but its global structure cannot be directly determined from an amino acid sequence. The incorporation of information about the conformal states of neighboring residues along the chain allows one to accurately translate the local structure into a global structure. We present a two-step algorithm, which recognizes up to 95% of the tested protein native-state structures to within a 2.5 A root mean square deviation. Copyright 2004 Wiley-Liss, Inc.

Structure and controls of the global virtual water trade network

NASA Astrophysics Data System (ADS)

Suweis, S.; Konar, M.; Dalin, C.; Hanasaki, N.; Rinaldo, A.; Rodriguez-Iturbe, I.

2011-05-01

Recurrent or ephemeral water shortages are a crucial global challenge, in particular because of their impacts on food production. The global character of this challenge is reflected in the trade among nations of virtual water, i.e., the amount of water used to produce a given commodity. We build, analyze and model the network describing the transfer of virtual water between world nations for staple food products. We find that all the key features of the network are well described by a model that reproduces both the topological and weighted properties of the global virtual water trade network, by assuming as sole controls each country's gross domestic product and yearly rainfall on agricultural areas. We capture and quantitatively describe the high degree of globalization of water trade and show that a small group of nations play a key role in the connectivity of the network and in the global redistribution of virtual water. Finally, we illustrate examples of prediction of the structure of the network under future political, economic and climatic scenarios, suggesting that the crucial importance of the countries that trade large volumes of water will be strengthened.

Effects of local vibrations on the dynamics of space truss structures

NASA Technical Reports Server (NTRS)

Warnaar, Dirk B.; Mcgowan, Paul E.

1987-01-01

The paper discusses the influence of local member vibrations on the dynamics of repetitive space truss structures. Several focus problems wherein local member vibration modes are in the frequency range of the global truss modes are discussed. Special attention is given to defining methods that can be used to identify the global modes of a truss structure amidst many local modes. Significant interactions between the motions of local member vibrations and the global behavior are shown to occur in truss structures when: (1) the natural frequencies of the individual members for clamped-clamped boundary conditions are in the vicinity of the global truss frequency; and (2) the total mass of the individual members represents a large portion of the mass of the whole structure. The analysis is carried out with a structural analysis code which uses exact member theory. The modeling detail required using conventional finite element codes to adequately represent such a class of problems is examined. The paper concludes with some practical considerations for the design and dynamic testing of structures which might exhibit such behavior.

Nonlinear structural joint model updating based on instantaneous characteristics of dynamic responses

NASA Astrophysics Data System (ADS)

Wang, Zuo-Cai; Xin, Yu; Ren, Wei-Xin

2016-08-01

This paper proposes a new nonlinear joint model updating method for shear type structures based on the instantaneous characteristics of the decomposed structural dynamic responses. To obtain an accurate representation of a nonlinear system's dynamics, the nonlinear joint model is described as the nonlinear spring element with bilinear stiffness. The instantaneous frequencies and amplitudes of the decomposed mono-component are first extracted by the analytical mode decomposition (AMD) method. Then, an objective function based on the residuals of the instantaneous frequencies and amplitudes between the experimental structure and the nonlinear model is created for the nonlinear joint model updating. The optimal values of the nonlinear joint model parameters are obtained by minimizing the objective function using the simulated annealing global optimization method. To validate the effectiveness of the proposed method, a single-story shear type structure subjected to earthquake and harmonic excitations is simulated as a numerical example. Then, a beam structure with multiple local nonlinear elements subjected to earthquake excitation is also simulated. The nonlinear beam structure is updated based on the global and local model using the proposed method. The results show that the proposed local nonlinear model updating method is more effective for structures with multiple local nonlinear elements. Finally, the proposed method is verified by the shake table test of a real high voltage switch structure. The accuracy of the proposed method is quantified both in numerical and experimental applications using the defined error indices. Both the numerical and experimental results have shown that the proposed method can effectively update the nonlinear joint model.

Characterizing and Addressing the Need for Statistical Adjustment of Global Climate Model Data

NASA Astrophysics Data System (ADS)

White, K. D.; Baker, B.; Mueller, C.; Villarini, G.; Foley, P.; Friedman, D.

2017-12-01

As part of its mission to research and measure the effects of the changing climate, the U. S. Army Corps of Engineers (USACE) regularly uses the World Climate Research Programme's Coupled Model Intercomparison Project Phase 5 (CMIP5) multi-model dataset. However, these data are generated at a global level and are not fine-tuned for specific watersheds. This often causes CMIP5 output to vary from locally observed patterns in the climate. Several downscaling methods have been developed to increase the resolution of the CMIP5 data and decrease systemic differences to support decision-makers as they evaluate results at the watershed scale. Evaluating preliminary comparisons of observed and projected flow frequency curves over the US revealed a simple framework for water resources decision makers to plan and design water resources management measures under changing conditions using standard tools. Using this framework as a basis, USACE has begun to explore to use of statistical adjustment to alter global climate model data to better match the locally observed patterns while preserving the general structure and behavior of the model data. When paired with careful measurement and hypothesis testing, statistical adjustment can be particularly effective at navigating the compromise between the locally observed patterns and the global climate model structures for decision makers.

Tomographic Validation of the AWSoM Model of the Inner Corona During Solar Minima

NASA Astrophysics Data System (ADS)

Manchester, W.; Vásquez, A. M.; Lloveras, D. G.; Mac Cormack, C.; Nuevo, F.; Lopez-Fuentes, M.; Frazin, R. A.; van der Holst, B.; Landi, E.; Gombosi, T. I.

2017-12-01

Continuous improvement of MHD three-dimensional (3D) models of the global solar corona, such as the Alfven Wave Solar Model (AWSoM) of the Space Weather Modeling Framework (SWMF), requires testing their ability to reproduce observational constraints at a global scale. To that end, solar rotational tomography based on EUV image time-series can be used to reconstruct the 3D distribution of the electron density and temperature in the inner solar corona (r < 1.25 Rsun). The tomographic results, combined with a global coronal magnetic model, can further provide constraints on the energy input flux required at the coronal base to maintain stable structures. In this work, tomographic reconstructions are used to validate steady-state 3D MHD simulations of the inner corona using the latest version of the AWSoM model. We perform the study for selected rotations representative of solar minimum conditions, when the global structure of the corona is more axisymmetric. We analyse in particular the ability of the MHD simulation to match the tomographic results across the boundary region between the equatorial streamer belt and the surrounding coronal holes. The region is of particular interest as the plasma flow from that zone is thought to be related to the origin of the slow component of the solar wind.

A model for the evolution of the Earth's mantle structure since the Early Paleozoic

NASA Astrophysics Data System (ADS)

Zhang, Nan; Zhong, Shijie; Leng, Wei; Li, Zheng-Xiang

2010-06-01

Seismic tomography studies indicate that the Earth's mantle structure is characterized by African and Pacific seismically slow velocity anomalies (i.e., superplumes) and circum-Pacific seismically fast anomalies (i.e., a globally spherical harmonic degree 2 structure). However, the cause for and time evolution of the African and Pacific superplumes and the degree 2 mantle structure remain poorly understood with two competing proposals. First, the African and Pacific superplumes have remained largely unchanged for at least the last 300 Myr and possibly much longer. Second, the African superplume is formed sometime after the formation of Pangea (i.e., at 330 Ma) and the mantle in the African hemisphere is predominated by cold downwelling structures before and during the assembly of Pangea, while the Pacific superplume has been stable for the Pangea supercontinent cycle (i.e., globally a degree 1 structure before the Pangea formation). Here, we construct a proxy model of plate motions for the African hemisphere for the last 450 Myr since the Early Paleozoic using the paleogeographic reconstruction of continents constrained by paleomagnetic and geological observations. Coupled with assumed oceanic plate motions for the Pacific hemisphere, this proxy model for the plate motion history is used as time-dependent surface boundary condition in three-dimensional spherical models of thermochemical mantle convection to study the evolution of mantle structure, particularly the African mantle structure, since the Early Paleozoic. Our model calculations reproduce well the present-day mantle structure including the African and Pacific superplumes and generally support the second proposal with a dynamic cause for the superplume structure. Our results suggest that while the mantle in the African hemisphere before the assembly of Pangea is predominated by the cold downwelling structure resulting from plate convergence between Gondwana and Laurussia, it is unlikely that the bulk of the African superplume structure can be formed before ˜230 Ma (i.e., ˜100 Myr after the assembly of Pangea). Particularly, the last 120 Myr plate motion plays an important role in generating the African superplume. Our models have implications for understanding the global-scale magmatism, tectonics, mantle dynamics, and thermal evolution history for the Earth since the Early Paleozoic.

Global estimation of ocean tides in deep and shallow waters from TOPEX/POSEIDON and numerical models with applications to geophysics, oceanography, and precision altimetry

NASA Astrophysics Data System (ADS)

Tierney, Craig Cristy

Presented here are several investigations of ocean tides derived from TOPEX/POSEIDON (T/P) altimetry and numerical models. The purpose of these investigations is to study the short wavelength features in the T/P data and to preserve these wavelengths in global ocean tide models that are accurate in shallow and deep waters. With these new estimates, effects of the tides on loading, Earth's rotation, and tidal energetics are studied. To preserve tidal structure, tides have been estimated along the ground track of T/P by the harmonic and response methods using 4.5 years of data. Results show the two along-track (AT) estimates agree with each other and with other tide models for those components with minimal aliasing problems. Comparisons to global models show that there is tidal structure in the T/P data that is not preserved with current gridding methods. Error estimates suggest there is accurate information in the T/P data from shallow waters that can be used to improve tidal models. It has been shown by Ray and Mitchum (1996) that the first mode baroclinic tide can be separated from AT tide estimates by filtering. This method has been used to estimate the first mode semidiurnal baroclinic tides globally. Estimates for M2 show good correlation with known regions of baroclinic tide generation. Using gridded, filtered AT estimates, a lower bound on the energy contained in the M2 baroclinic tide is 50 PJ. Inspired by the structure found in the AT estimates, a gridding method is presented that preserves tidal structure in the T/P data. These estimates are assimilated into a nonlinear, finite difference, global barotropic tidal model. Results from the 8 major tidal constituents show the model performs equivalently to other models in the deep waters, and is significantly better in the shallow waters. Crossover variance is reduced from 14 cm to 10 cm in the shallow waters. Comparisons to Earth rotation show good agreement to results from VLBI data. Tidal energetics computed from the models show good agreement with previous results. PE/KE ratios and quality factors are more consistent in each frequency band than in previous results.

Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB.

PubMed

Suzuki, Hirofumi; Kawabata, Takeshi; Nakamura, Haruki

2016-02-15

Omokage search is a service to search the global shape similarity of biological macromolecules and their assemblies, in both the Protein Data Bank (PDB) and Electron Microscopy Data Bank (EMDB). The server compares global shapes of assemblies independent of sequence order and number of subunits. As a search query, the user inputs a structure ID (PDB ID or EMDB ID) or uploads an atomic model or 3D density map to the server. The search is performed usually within 1 min, using one-dimensional profiles (incremental distance rank profiles) to characterize the shapes. Using the gmfit (Gaussian mixture model fitting) program, the found structures are fitted onto the query structure and their superimposed structures are displayed on the Web browser. Our service provides new structural perspectives to life science researchers. Omokage search is freely accessible at http://pdbj.org/omokage/. © The Author 2015. Published by Oxford University Press.

Searching for 3D Viscosity Models of Glacial Isostatic Adjustment in Support of the Global ICE-6G_C Ice History Model

NASA Astrophysics Data System (ADS)

LI, T., II; Wu, P.; Steffen, H.; Wang, H.

2017-12-01

The global ice history model ICE-6G_C was constructed based on the laterally homogeneous earth model VM5a. The combined model of glacial isostatic adjustment (GIA) called ICE-6G_C (VM5a) fits global observations of GIA simultaneously well. However, seismic and geological observations clearly show that the Earth's mantle is laterally heterogeneous. Our aim therefore is to search for the best laterally heterogeneous viscosity models with ICE-6G_C ice history that is able to fit the global relative sea-level (RSL) data, the peak uplift rates (from GNSS) and peak g-dot rates (from the GRACE satellite mission) in Laurentia and Fennoscandia simultaneously. The Coupled Laplace-Finite Element Method is used to compute gravitationally self-consistent sea levels with time dependent coastlines and rotational feedback in addition to changes in deformation, gravity and the state of stress. As a start, the VM5a Earth model is used as the radial background viscosity structure but other radial background viscosity models will also be investigated. Lateral mantle viscosity structure is obtained by the superposition of the radial background viscosity and the lateral viscosity perturbations logarithmically. The latter is inferred from a seismic tomography model using a scaling relationship that takes into account the effects of anharmonicity, anelasticity and non-thermal effects. We will show that several laterally heterogeneous mantle viscosity models can fit the global sea level, GPS and GRACE data better than laterally homogeneous models, provided that the scaling relationship for mantle heterogeneity under northern Europe is allowed to be different from that under Laurentia. In addition, the effects of laterally heterogeneous lithosphere, as inferred from seismic tomography, and the lateral changes in sub-lithospheric properties will also be presented.

Comparing the Performance of Three Land Models in Global C Cycle Simulations: A Detailed Structural Analysis: Structural Analysis of Land Models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rafique, Rashid; Xia, Jianyang; Hararuk, Oleksandra

Land models are valuable tools to understand the dynamics of global carbon (C) cycle. Various models have been developed and used for predictions of future C dynamics but uncertainties still exist. Diagnosing the models’ behaviors in terms of structures can help to narrow down the uncertainties in prediction of C dynamics. In this study three widely used land surface models, namely CSIRO’s Atmosphere Biosphere Land Exchange (CABLE) with 9 C pools, Community Land Model (version 3.5) combined with Carnegie-Ames-Stanford Approach (CLM-CASA) with 12 C pools and Community Land Model (version 4) (CLM4) with 26 C pools were driven by themore » observed meteorological forcing. The simulated C storage and residence time were used for analysis. The C storage and residence time were computed globally for all individual soil and plant pools, as well as net primary productivity (NPP) and its allocation to different plant components’ based on these models. Remotely sensed NPP and statistically derived HWSD, and GLC2000 datasets were used as a reference to evaluate the performance of these models. Results showed that CABLE exhibited better agreement with referenced C storage and residence time for plant and soil pools, as compared with CLM-CASA and CLM4. CABLE had longer bulk residence time for soil C pools and stored more C in roots, whereas, CLM-CASA and CLM4 stored more C in woody pools due to differential NPP allocation. Overall, these results indicate that the differences in C storage and residence times in three models are largely due to the differences in their fundamental structures (number of C pools), NPP allocation and C transfer rates. Our results have implications in model development and provide a general framework to explain the bias/uncertainties in simulation of C storage and residence times from the perspectives of model structures.« less

Meridionally propagating interannual-to-interdecadal variability in a linear ocean-atmosphere model

NASA Technical Reports Server (NTRS)

Mehta, Vikram M.

1992-01-01

Meridional oscillation modes in a global, primitive-equation coupled ocean-atmosphere model have been analyzed in order to determine whether they contain such meridionally propagating modes as surface-pressure perturbations with years-to-decades oscillation periods. A two-layer global ocean model and a two-level global atmosphere model were then formulated. For realistic parameter values and basic states, meridional modes oscillating at periods of several years to several decades are noted to be present in the coupled ocean-atmosphere model; the oscillation periods, travel times, and meridional structures of surface pressure perturbations in one of the modes are found to be comparable to the corresponding characteristics of observed sea-level pressure perturbations.

Atmospheric moisture and cloud structure determined from SSM/I and global gridpoint analyses. [Special Sensor Microwave Imager

NASA Technical Reports Server (NTRS)

Robertson, Franklin R.; Huang, Huo-Jin

1989-01-01

Data from the Special Sensor Microwave Imager/I on the DMSP satellite are used to study atmospheric moisture and cloud structure. Column-integrated water vapor and total liquid water retrievals are obtained using an algorithm based on a radiative model for brightness temperature (Wentz, 1983). The results from analyzing microwave and IR measurements are combined with independent global gridpoint analyses to study the distribution and structure of atmospheric moisture over oceanic regions.

The VSGB 2.0 Model: A Next Generation Energy Model for High Resolution Protein Structure Modeling

PubMed Central

Li, Jianing; Abel, Robert; Zhu, Kai; Cao, Yixiang; Zhao, Suwen; Friesner, Richard A.

2011-01-01

A novel energy model (VSGB 2.0) for high resolution protein structure modeling is described, which features an optimized implicit solvent model as well as physics-based corrections for hydrogen bonding, π-π interactions, self-contact interactions and hydrophobic interactions. Parameters of the VSGB 2.0 model were fit to a crystallographic database of 2239 single side chain and 100 11–13 residue loop predictions. Combined with an advanced method of sampling and a robust algorithm for protonation state assignment, the VSGB 2.0 model was validated by predicting 115 super long loops up to 20 residues. Despite the dramatically increasing difficulty in reconstructing longer loops, a high accuracy was achieved: all of the lowest energy conformations have global backbone RMSDs better than 2.0 Å from the native conformations. Average global backbone RMSDs of the predictions are 0.51, 0.63, 0.70, 0.62, 0.80, 1.41, and 1.59 Å for 14, 15, 16, 17, 18, 19, and 20 residue loop predictions, respectively. When these results are corrected for possible statistical bias as explained in the text, the average global backbone RMSDs are 0.61, 0.71, 0.86, 0.62, 1.06, 1.67, and 1.59 Å. Given the precision and robustness of the calculations, we believe that the VSGB 2.0 model is suitable to tackle “real” problems, such as biological function modeling and structure-based drug discovery. PMID:21905107

Compilation of 3D global conductivity model of the Earth for space weather applications

NASA Astrophysics Data System (ADS)

Alekseev, Dmitry; Kuvshinov, Alexey; Palshin, Nikolay

2015-07-01

We have compiled a global three-dimensional (3D) conductivity model of the Earth with an ultimate goal to be used for realistic simulation of geomagnetically induced currents (GIC), posing a potential threat to man-made electric systems. Bearing in mind the intrinsic frequency range of the most intense disturbances (magnetospheric substorms) with typical periods ranging from a few minutes to a few hours, the compiled 3D model represents the structure in depth range of 0-100 km, including seawater, sediments, earth crust, and partly the lithosphere/asthenosphere. More explicitly, the model consists of a series of spherical layers, whose vertical and lateral boundaries are established based on available data. To compile a model, global maps of bathymetry, sediment thickness, and upper and lower crust thicknesses as well as lithosphere thickness are utilized. All maps are re-interpolated on a common grid of 0.25×0.25 degree lateral spacing. Once the geometry of different structures is specified, each element of the structure is assigned either a certain conductivity value or conductivity versus depth distribution, according to available laboratory data and conversion laws. A numerical formalism developed for compilation of the model, allows for its further refinement by incorporation of regional 3D conductivity distributions inferred from the real electromagnetic data. So far we included into our model four regional conductivity models, available from recent publications, namely, surface conductance model of Russia, and 3D conductivity models of Fennoscandia, Australia, and northwest of the United States.

A Simple Climate Model Program for High School Education

NASA Astrophysics Data System (ADS)

Dommenget, D.

2012-04-01

The future climate change projections of the IPCC AR4 are based on GCM simulations, which give a distinct global warming pattern, with an arctic winter amplification, an equilibrium land sea contrast and an inter-hemispheric warming gradient. While these simulations are the most important tool of the IPCC predictions, the conceptual understanding of these predicted structures of climate change are very difficult to reach if only based on these highly complex GCM simulations and they are not accessible for ordinary people. In this study presented here we will introduce a very simple gridded globally resolved energy balance model based on strongly simplified physical processes, which is capable of simulating the main characteristics of global warming. The model shall give a bridge between the 1-dimensional energy balance models and the fully coupled 4-dimensional complex GCMs. It runs on standard PC computers computing globally resolved climate simulation with 2yrs per second or 100,000yrs per day. The program can compute typical global warming scenarios in a few minutes on a standard PC. The computer code is only 730 line long with very simple formulations that high school students should be able to understand. The simple model's climate sensitivity and the spatial structure of the warming pattern is within the uncertainties of the IPCC AR4 models simulations. It is capable of simulating the arctic winter amplification, the equilibrium land sea contrast and the inter-hemispheric warming gradient with good agreement to the IPCC AR4 models in amplitude and structure. The program can be used to do sensitivity studies in which students can change something (e.g. reduce the solar radiation, take away the clouds or make snow black) and see how it effects the climate or the climate response to changes in greenhouse gases. This program is available for every one and could be the basis for high school education. Partners for a high school project are wanted!

Flight motor set 360L001 (STS-26R). (Reconstructed dynamic loads analysis)

NASA Technical Reports Server (NTRS)

Call, V. B.

1989-01-01

A transient analysis was performed to correlate the predicted versus measured behavior of the Redesigned Solid Rocket Booster (RSRB) during Flight 360L001 (STS-26R) liftoff. Approximately 9 accelerometers, 152 strain gages, and 104 girth gages were bonded to the motors during this event. Prior to Flight 360L001, a finite element model of the RSRB was analyzed to predict the accelerations, strains, and displacements measured by this developmental flight instrumentation (DFI) within an order of magnitude. Subsequently, an analysis has been performed which uses actual Flight 360L001 liftoff loading conditions, and makes more precise predictions for the RSRB structural behavior. Essential information describing the analytical model, analytical techniques used, correlation of the predicted versus measured RSRB behavior, and conclusions, are presented. A detailed model of the RSRB was developed and correlated for use in analyzing the motor behavior during liftoff loading conditions. This finite element model, referred to as the RSRB global model, uses super-element techniques to model all components of the RSRB. The objective of the RSRB global model is to accurately predict deflections and gap openings in the field joints to an accuracy of approximately 0.001 inch. The model of the field joint component was correlated to Referee and Joint Environment Simulation (JES) tests. The accuracy of the assembled RSRB global model was validated by correlation to static-fire tests such DM-8, DM-9, QM-7, and QM-8. This validated RSRB global model was used to predict RSRB structural behavior and joint gap opening during Flight 360L001 liftoff. The results of a transient analysis of the RSRB global model with imposed liftoff loading conditions are presented. Rockwell used many gage measurements to reconstruct the load parameters which were imposed on the RSRB during the Flight 360L001 liftoff. Each load parameter, and its application, is described. Also presented are conclusions and recommendations based on the analysis of this load case and the resulting correlation between predicted and measured RSRB structural behavior.

Highlighting the Structure-Function Relationship of the Brain with the Ising Model and Graph Theory

PubMed Central

Das, T. K.; Abeyasinghe, P. M.; Crone, J. S.; Sosnowski, A.; Laureys, S.; Owen, A. M.; Soddu, A.

2014-01-01

With the advent of neuroimaging techniques, it becomes feasible to explore the structure-function relationships in the brain. When the brain is not involved in any cognitive task or stimulated by any external output, it preserves important activities which follow well-defined spatial distribution patterns. Understanding the self-organization of the brain from its anatomical structure, it has been recently suggested to model the observed functional pattern from the structure of white matter fiber bundles. Different models which study synchronization (e.g., the Kuramoto model) or global dynamics (e.g., the Ising model) have shown success in capturing fundamental properties of the brain. In particular, these models can explain the competition between modularity and specialization and the need for integration in the brain. Graphing the functional and structural brain organization supports the model and can also highlight the strategy used to process and organize large amount of information traveling between the different modules. How the flow of information can be prevented or partially destroyed in pathological states, like in severe brain injured patients with disorders of consciousness or by pharmacological induction like in anaesthesia, will also help us to better understand how global or integrated behavior can emerge from local and modular interactions. PMID:25276772

Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models

PubMed Central

Lezon, Timothy R.; Sali, Andrej; Bahar, Ivet

2009-01-01

The nuclear pore complex (NPC) is the gate to the nucleus. Recent determination of the configuration of proteins in the yeast NPC at ∼5 nm resolution permits us to study the NPC global dynamics using coarse-grained structural models. We investigate these large-scale motions by using an extended elastic network model (ENM) formalism applied to several coarse-grained representations of the NPC. Two types of collective motions (global modes) are predicted by the ENMs to be intrinsically favored by the NPC architecture: global bending and extension/contraction from circular to elliptical shapes. These motions are shown to be robust against tested variations in the representation of the NPC, and are largely captured by a simple model of a toroid with axially varying mass density. We demonstrate that spoke multiplicity significantly affects the accessible number of symmetric low-energy modes of motion; the NPC-like toroidal structures composed of 8 spokes have access to highly cooperative symmetric motions that are inaccessible to toroids composed of 7 or 9 spokes. The analysis reveals modes of motion that may facilitate macromolecular transport through the NPC, consistent with previous experimental observations. PMID:19730674

Global motions of the nuclear pore complex: insights from elastic network models.

PubMed

Lezon, Timothy R; Sali, Andrej; Bahar, Ivet

2009-09-01

The nuclear pore complex (NPC) is the gate to the nucleus. Recent determination of the configuration of proteins in the yeast NPC at approximately 5 nm resolution permits us to study the NPC global dynamics using coarse-grained structural models. We investigate these large-scale motions by using an extended elastic network model (ENM) formalism applied to several coarse-grained representations of the NPC. Two types of collective motions (global modes) are predicted by the ENMs to be intrinsically favored by the NPC architecture: global bending and extension/contraction from circular to elliptical shapes. These motions are shown to be robust against tested variations in the representation of the NPC, and are largely captured by a simple model of a toroid with axially varying mass density. We demonstrate that spoke multiplicity significantly affects the accessible number of symmetric low-energy modes of motion; the NPC-like toroidal structures composed of 8 spokes have access to highly cooperative symmetric motions that are inaccessible to toroids composed of 7 or 9 spokes. The analysis reveals modes of motion that may facilitate macromolecular transport through the NPC, consistent with previous experimental observations.

Evaluation of variability in high-resolution protein structures by global distance scoring.

PubMed

Anzai, Risa; Asami, Yoshiki; Inoue, Waka; Ueno, Hina; Yamada, Koya; Okada, Tetsuji

2018-01-01

Systematic analysis of the statistical and dynamical properties of proteins is critical to understanding cellular events. Extraction of biologically relevant information from a set of high-resolution structures is important because it can provide mechanistic details behind the functional properties of protein families, enabling rational comparison between families. Most of the current structural comparisons are pairwise-based, which hampers the global analysis of increasing contents in the Protein Data Bank. Additionally, pairing of protein structures introduces uncertainty with respect to reproducibility because it frequently accompanies other settings for superimposition. This study introduces intramolecular distance scoring for the global analysis of proteins, for each of which at least several high-resolution structures are available. As a pilot study, we have tested 300 human proteins and showed that the method is comprehensively used to overview advances in each protein and protein family at the atomic level. This method, together with the interpretation of the model calculations, provide new criteria for understanding specific structural variation in a protein, enabling global comparison of the variability in proteins from different species.

Protein Loop Structure Prediction Using Conformational Space Annealing.

PubMed

Heo, Seungryong; Lee, Juyong; Joo, Keehyoung; Shin, Hang-Cheol; Lee, Jooyoung

2017-05-22

We have developed a protein loop structure prediction method by combining a new energy function, which we call E PLM (energy for protein loop modeling), with the conformational space annealing (CSA) global optimization algorithm. The energy function includes stereochemistry, dynamic fragment assembly, distance-scaled finite ideal gas reference (DFIRE), and generalized orientation- and distance-dependent terms. For the conformational search of loop structures, we used the CSA algorithm, which has been quite successful in dealing with various hard global optimization problems. We assessed the performance of E PLM with two widely used loop-decoy sets, Jacobson and RAPPER, and compared the results against the DFIRE potential. The accuracy of model selection from a pool of loop decoys as well as de novo loop modeling starting from randomly generated structures was examined separately. For the selection of a nativelike structure from a decoy set, E PLM was more accurate than DFIRE in the case of the Jacobson set and had similar accuracy in the case of the RAPPER set. In terms of sampling more nativelike loop structures, E PLM outperformed E DFIRE for both decoy sets. This new approach equipped with E PLM and CSA can serve as the state-of-the-art de novo loop modeling method.

Using Global Plate Velocity Boundary Conditions for Embedded Regional Geodynamic Models

NASA Astrophysics Data System (ADS)

Taramon Gomez, Jorge; Morgan, Jason; Perez-Gussinye, Marta

2015-04-01

The treatment of far-field boundary conditions is one of the most poorly resolved issues for regional modeling of geodynamic processes. In viscous flow, the choice of far-field boundary conditions often strongly shapes the large-scale structure of a geosimulation. The mantle velocity field along the sidewalls and base of a modeling region is typically much more poorly known than the geometry of past global motions of the surface plates as constrained by global plate motion reconstructions. For regional rifting models it has become routine to apply highly simplified 'plate spreading' or 'uniform rifting' boundary conditions to a 3-D model that limits its ability to simulate the geodynamic evolution of a specific rifted margin. One way researchers are exploring the sensitivity of regional models to uncertain boundary conditions is to use a nested modeling approach in which a global model is used to determine a large-scale flow pattern that is imposed as a constraint along the boundaries of the region to be modeled. Here we explore the utility of a different approach that takes advantage of the ability of finite element models to use unstructured meshes than can embed much higher resolution sub-regions within a spherical global mesh. In our initial project to validate this approach, we create a global spherical mesh in which a higher resolution sub-region is created around the nascent South Atlantic Rifting Margin. Global Plate motion BCs and plate boundaries are applied for the time of the onset of rifting, continuing through several 10s of Ma of rifting. Thermal, compositional, and melt-related buoyancy forces are only non-zero within the high-resolution subregion, elsewhere, motions are constrained by surface plate-motion constraints. The total number of unknowns needed to solve an embedded regional model with this approach is less than 1/3 larger than that needed for a structured-mesh solution on a Cartesian or spherical cap sub-regional mesh. Here we illustrate the initial steps within this workflow for creating time-varying surface boundary conditions (using GPlates), and a time-variable unstructured 3-D spherical mesh.

Comparison of Modeling Approaches for Carbon Partitioning: Impact on Estimates of Global Net Primary Production and Equilibrium Biomass of Woody Vegetation from MODIS GPP

NASA Astrophysics Data System (ADS)

Ise, T.; Litton, C. M.; Giardina, C. P.; Ito, A.

2009-12-01

Plant partitioning of carbon (C) to above- vs. belowground, to growth vs. respiration, and to short vs. long lived tissues exerts a large influence on ecosystem structure and function with implications for the global C budget. Importantly, outcomes of process-based terrestrial vegetation models are likely to vary substantially with different C partitioning algorithms. However, controls on C partitioning patterns remain poorly quantified, and studies have yielded variable, and at times contradictory, results. A recent meta-analysis of forest studies suggests that the ratio of net primary production (NPP) and gross primary production (GPP) is fairly conservative across large scales. To illustrate the effect of this unique meta-analysis-based partitioning scheme (MPS), we compared an application of MPS to a terrestrial satellite-based (MODIS) GPP to estimate NPP vs. two global process-based vegetation models (Biome-BGC and VISIT) to examine the influence of C partitioning on C budgets of woody plants. Due to the temperature dependence of maintenance respiration, NPP/GPP predicted by the process-based models increased with latitude while the ratio remained constant with MPS. Overall, global NPP estimated with MPS was 17 and 27% lower than the process-based models for temperate and boreal biomes, respectively, with smaller differences in the tropics. Global equilibrium biomass of woody plants was then calculated from the NPP estimates and tissue turnover rates from VISIT. Since turnover rates differed greatly across tissue types (i.e., metabolically active vs. structural), global equilibrium biomass estimates were sensitive to the partitioning scheme employed. The MPS estimate of global woody biomass was 7-21% lower than that of the process-based models. In summary, we found that model output for NPP and equilibrium biomass was quite sensitive to the choice of C partitioning schemes. Carbon use efficiency (CUE; NPP/GPP) by forest biome and the globe. Values are means for 2001-2006.

The associations between perceived distributive, procedural, and interactional organizational justice, self-rated health and burnout.

PubMed

Liljegren, Mats; Ekberg, Kerstin

2009-01-01

The aim of the present study was to examine the cross-sectional and 2-year longitudinal associations between perceived organizational justice, self-rated health and burnout. The study used questionnaire data from 428 Swedish employment officers and the data was analyzed with Structural Equation Modeling, SEM. Two different models were tested: a global organizational justice model (with and without correlated measurement errors) and a differentiated (distributive, procedural and interactional organizational justice) justice model (with and without correlated measurement errors). The global justice model with autocorrelations had the most satisfactory goodness-of-fit indices. Global justice showed statistically significant (p < 0.01) cross-sectional (0.80 {mle 0.84) and longitudinal positive associations (0.76 mle 0.82) between organizational justice and self-rated health, and significant (p < 0.01) negative associations between organizational justice and burnout (cross-sectional: mle = -0.85, longitudinal -0.83 mle -0.84). The global justice construct showed better goodness-of-fit indices than the threefold justice construct but a differentiated organizational justice concept could give valuable information about health related risk factors: if they are structural (distributive justice), procedural (procedural justice) or inter-personal (interactional justice). The two approaches to study organizational justice should therefore be regarded as complementary rather than exclusive.

Optimal Network Modularity for Information Diffusion

NASA Astrophysics Data System (ADS)

Nematzadeh, Azadeh; Ferrara, Emilio; Flammini, Alessandro; Ahn, Yong-Yeol

2014-08-01

We investigate the impact of community structure on information diffusion with the linear threshold model. Our results demonstrate that modular structure may have counterintuitive effects on information diffusion when social reinforcement is present. We show that strong communities can facilitate global diffusion by enhancing local, intracommunity spreading. Using both analytic approaches and numerical simulations, we demonstrate the existence of an optimal network modularity, where global diffusion requires the minimal number of early adopters.

Exploring new topography-based subgrid spatial structures for improving land surface modeling

DOE PAGES

Tesfa, Teklu K.; Leung, Lai-Yung Ruby

2017-02-22

Topography plays an important role in land surface processes through its influence on atmospheric forcing, soil and vegetation properties, and river network topology and drainage area. Land surface models with a spatial structure that captures spatial heterogeneity, which is directly affected by topography, may improve the representation of land surface processes. Previous studies found that land surface modeling, using subbasins instead of structured grids as computational units, improves the scalability of simulated runoff and streamflow processes. In this study, new land surface spatial structures are explored by further dividing subbasins into subgrid structures based on topographic properties, including surface elevation,more » slope and aspect. Two methods (local and global) of watershed discretization are applied to derive two types of subgrid structures (geo-located and non-geo-located) over the topographically diverse Columbia River basin in the northwestern United States. In the global method, a fixed elevation classification scheme is used to discretize subbasins. The local method utilizes concepts of hypsometric analysis to discretize each subbasin, using different elevation ranges that also naturally account for slope variations. The relative merits of the two methods and subgrid structures are investigated for their ability to capture topographic heterogeneity and the implications of this on representations of atmospheric forcing and land cover spatial patterns. Results showed that the local method reduces the standard deviation (SD) of subgrid surface elevation in the study domain by 17 to 19 % compared to the global method, highlighting the relative advantages of the local method for capturing subgrid topographic variations. The comparison between the two types of subgrid structures showed that the non-geo-located subgrid structures are more consistent across different area threshold values than the geo-located subgrid structures. Altogether the local method and non-geo-located subgrid structures effectively and robustly capture topographic, climatic and vegetation variability, which is important for land surface modeling.« less

Exploring new topography-based subgrid spatial structures for improving land surface modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tesfa, Teklu K.; Leung, Lai-Yung Ruby

Topography plays an important role in land surface processes through its influence on atmospheric forcing, soil and vegetation properties, and river network topology and drainage area. Land surface models with a spatial structure that captures spatial heterogeneity, which is directly affected by topography, may improve the representation of land surface processes. Previous studies found that land surface modeling, using subbasins instead of structured grids as computational units, improves the scalability of simulated runoff and streamflow processes. In this study, new land surface spatial structures are explored by further dividing subbasins into subgrid structures based on topographic properties, including surface elevation,more » slope and aspect. Two methods (local and global) of watershed discretization are applied to derive two types of subgrid structures (geo-located and non-geo-located) over the topographically diverse Columbia River basin in the northwestern United States. In the global method, a fixed elevation classification scheme is used to discretize subbasins. The local method utilizes concepts of hypsometric analysis to discretize each subbasin, using different elevation ranges that also naturally account for slope variations. The relative merits of the two methods and subgrid structures are investigated for their ability to capture topographic heterogeneity and the implications of this on representations of atmospheric forcing and land cover spatial patterns. Results showed that the local method reduces the standard deviation (SD) of subgrid surface elevation in the study domain by 17 to 19 % compared to the global method, highlighting the relative advantages of the local method for capturing subgrid topographic variations. The comparison between the two types of subgrid structures showed that the non-geo-located subgrid structures are more consistent across different area threshold values than the geo-located subgrid structures. Altogether the local method and non-geo-located subgrid structures effectively and robustly capture topographic, climatic and vegetation variability, which is important for land surface modeling.« less

Layerwise Mechanics and Finite Elements for Smart Composite Structures with Piezoelectric Actuators and Sensors

NASA Technical Reports Server (NTRS)

Saravanos, Dimitris A.; Heyliger, Paul R.; Hopkins, Dale A.

1996-01-01

Recent developments on layerwise mechanics for the analysis of composite laminates and structures with piezoelectric actuators and sensors are reviewed. The mechanics implement layerwise representations of displacements and electric potential, and can model both the global and local electromechanical response of smart composite structures. The corresponding finite-element implementations for the static and dynamic analysis of smart piezoelectric composite structures are also summarized. Select application illustrate the accuracy, robustness and capability of the developed mechanics to capture the global and local dynamic response of thin and/or thick laminated piezoelectric plates.

A Future-Oriented, Globally Based Curriculum Model for Industrial Technology.

ERIC Educational Resources Information Center

Hacker, Michael

1982-01-01

Presents a future-oriented curriculum approach for industrial technology programs. Major global issues provide the basic structure for curriculum development. These issues include energy management, resource management, technological advancement, and international relations. Rationales for industrial technology are discussed and a curriculum…

Probabilistic Estimates of Global Mean Sea Level and its Underlying Processes

NASA Astrophysics Data System (ADS)

Hay, C.; Morrow, E.; Kopp, R. E.; Mitrovica, J. X.

2015-12-01

Local sea level can vary significantly from the global mean value due to a suite of processes that includes ongoing sea-level changes due to the last ice age, land water storage, ocean circulation changes, and non-uniform sea-level changes that arise when modern-day land ice rapidly melts. Understanding these sources of spatial and temporal variability is critical to estimating past and present sea-level change and projecting future sea-level rise. Using two probabilistic techniques, a multi-model Kalman smoother and Gaussian process regression, we have reanalyzed 20th century tide gauge observations to produce a new estimate of global mean sea level (GMSL). Our methods allow us to extract global information from the sparse tide gauge field by taking advantage of the physics-based and model-derived geometry of the contributing processes. Both methods provide constraints on the sea-level contribution of glacial isostatic adjustment (GIA). The Kalman smoother tests multiple discrete models of glacial isostatic adjustment (GIA), probabilistically computing the most likely GIA model given the observations, while the Gaussian process regression characterizes the prior covariance structure of a suite of GIA models and then uses this structure to estimate the posterior distribution of local rates of GIA-induced sea-level change. We present the two methodologies, the model-derived geometries of the underlying processes, and our new probabilistic estimates of GMSL and GIA.

Early differential sensitivity of evoked-potentials to local and global shape during the perception of three-dimensional objects.

PubMed

Leek, E Charles; Roberts, Mark; Oliver, Zoe J; Cristino, Filipe; Pegna, Alan J

2016-08-01

Here we investigated the time course underlying differential processing of local and global shape information during the perception of complex three-dimensional (3D) objects. Observers made shape matching judgments about pairs of sequentially presented multi-part novel objects. Event-related potentials (ERPs) were used to measure perceptual sensitivity to 3D shape differences in terms of local part structure and global shape configuration - based on predictions derived from hierarchical structural description models of object recognition. There were three types of different object trials in which stimulus pairs (1) shared local parts but differed in global shape configuration; (2) contained different local parts but shared global configuration or (3) shared neither local parts nor global configuration. Analyses of the ERP data showed differential amplitude modulation as a function of shape similarity as early as the N1 component between 146-215ms post-stimulus onset. These negative amplitude deflections were more similar between objects sharing global shape configuration than local part structure. Differentiation among all stimulus types was reflected in N2 amplitude modulations between 276-330ms. sLORETA inverse solutions showed stronger involvement of left occipitotemporal areas during the N1 for object discrimination weighted towards local part structure. The results suggest that the perception of 3D object shape involves parallel processing of information at local and global scales. This processing is characterised by relatively slow derivation of 'fine-grained' local shape structure, and fast derivation of 'coarse-grained' global shape configuration. We propose that the rapid early derivation of global shape attributes underlies the observed patterns of N1 amplitude modulations. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Contribution of energy values to the analysis of global searching molecular dynamics simulations of transmembrane helical bundles.

PubMed Central

Torres, Jaume; Briggs, John A G; Arkin, Isaiah T

2002-01-01

Molecular interactions between transmembrane alpha-helices can be explored using global searching molecular dynamics simulations (GSMDS), a method that produces a group of probable low energy structures. We have shown previously that the correct model in various homooligomers is always located at the bottom of one of various possible energy basins. Unfortunately, the correct model is not necessarily the one with the lowest energy according to the computational protocol, which has resulted in overlooking of this parameter in favor of experimental data. In an attempt to use energetic considerations in the aforementioned analysis, we used global searching molecular dynamics simulations on three homooligomers of different sizes, the structures of which are known. As expected, our results show that even when the conformational space searched includes the correct structure, taking together simulations using both left and right handedness, the correct model does not necessarily have the lowest energy. However, for the models derived from the simulation that uses the correct handedness, the lowest energy model is always at, or very close to, the correct orientation. We hypothesize that this should also be true when simulations are performed using homologous sequences, and consequently lowest energy models with the right handedness should produce a cluster around a certain orientation. In contrast, using the wrong handedness the lowest energy structures for each sequence should appear at many different orientations. The rationale behind this is that, although more than one energy basin may exist, basins that do not contain the correct model will shift or disappear because they will be destabilized by at least one conservative (i.e. silent) mutation, whereas the basin containing the correct model will remain. This not only allows one to point to the possible handedness of the bundle, but can be used to overcome ambiguities arising from the use of homologous sequences in the analysis of global searching molecular dynamics simulations. In addition, because clustering of lowest energy models arising from homologous sequences only happens when the estimation of the helix tilt is correct, it may provide a validation for the helix tilt estimate. PMID:12023229

Global Dynamics of Proteins: Bridging Between Structure and Function

PubMed Central

Bahar, Ivet; Lezon, Timothy R.; Yang, Lee-Wei; Eyal, Eran

2010-01-01

Biomolecular systems possess unique, structure-encoded dynamic properties that underlie their biological functions. Recent studies indicate that these dynamic properties are determined to a large extent by the topology of native contacts. In recent years, elastic network models used in conjunction with normal mode analyses have proven to be useful for elucidating the collective dynamics intrinsically accessible under native state conditions, including in particular the global modes of motions that are robustly defined by the overall architecture. With increasing availability of structural data for well-studied proteins in different forms (liganded, complexed, or free), there is increasing evidence in support of the correspondence between functional changes in structures observed in experiments and the global motions predicted by these coarse-grained analyses. These observed correlations suggest that computational methods may be advantageously employed for assessing functional changes in structure and allosteric mechanisms intrinsically favored by the native fold. PMID:20192781

Global dynamics of proteins: bridging between structure and function.

PubMed

Bahar, Ivet; Lezon, Timothy R; Yang, Lee-Wei; Eyal, Eran

2010-01-01

Biomolecular systems possess unique, structure-encoded dynamic properties that underlie their biological functions. Recent studies indicate that these dynamic properties are determined to a large extent by the topology of native contacts. In recent years, elastic network models used in conjunction with normal mode analyses have proven to be useful for elucidating the collective dynamics intrinsically accessible under native state conditions, including in particular the global modes of motions that are robustly defined by the overall architecture. With increasing availability of structural data for well-studied proteins in different forms (liganded, complexed, or free), there is increasing evidence in support of the correspondence between functional changes in structures observed in experiments and the global motions predicted by these coarse-grained analyses. These observed correlations suggest that computational methods may be advantageously employed for assessing functional changes in structure and allosteric mechanisms intrinsically favored by the native fold.

Improving Distributed Diagnosis Through Structural Model Decomposition

NASA Technical Reports Server (NTRS)

Bregon, Anibal; Daigle, Matthew John; Roychoudhury, Indranil; Biswas, Gautam; Koutsoukos, Xenofon; Pulido, Belarmino

2011-01-01

Complex engineering systems require efficient fault diagnosis methodologies, but centralized approaches do not scale well, and this motivates the development of distributed solutions. This work presents an event-based approach for distributed diagnosis of abrupt parametric faults in continuous systems, by using the structural model decomposition capabilities provided by Possible Conflicts. We develop a distributed diagnosis algorithm that uses residuals computed by extending Possible Conflicts to build local event-based diagnosers based on global diagnosability analysis. The proposed approach is applied to a multitank system, and results demonstrate an improvement in the design of local diagnosers. Since local diagnosers use only a subset of the residuals, and use subsystem models to compute residuals (instead of the global system model), the local diagnosers are more efficient than previously developed distributed approaches.

Three-dimensional Structure of the Milky Way Dust: Modeling of LAMOST Data

NASA Astrophysics Data System (ADS)

Li, Linlin; Shen, Shiyin; Hou, Jinliang; Yuan, Haibo; Xiang, Maosheng; Chen, Bingqiu; Huang, Yang; Liu, Xiaowei

2018-05-01

We present a three-dimensional modeling of the Milky Way dust distribution by fitting the value-added star catalog of the LAMOST spectral survey. The global dust distribution can be described by an exponential disk with a scale length of 3192 pc and a scale height of 103 pc. In this modeling, the Sun is located above the dust disk with a vertical distance of 23 pc. Besides the global smooth structure, two substructures around the solar position are also identified. The one located at 150° < l < 200° and ‑5° < b < ‑30° is consistent with the Gould Belt model of Gontcharov, and the other one located at 140° < l < 165° and 0° < b < 15° is associated with the Camelopardalis molecular clouds.

Innately Split Model for Job-shop Scheduling Problem

NASA Astrophysics Data System (ADS)

Ikeda, Kokolo; Kobayashi, Sigenobu

Job-shop Scheduling Problem (JSP) is one of the most difficult benchmark problems. GA approaches often fail searching the global optimum because of the deception UV-structure of JSPs. In this paper, we introduce a novel framework model of GA, Innately Split Model (ISM) which prevents UV-phenomenon, and discuss on its power particularly. Next we analyze the structure of JSPs with the help of the UV-structure hypothesys, and finally we show ISM's excellent performance on JSP.

3D model retrieval method based on mesh segmentation

NASA Astrophysics Data System (ADS)

Gan, Yuanchao; Tang, Yan; Zhang, Qingchen

2012-04-01

In the process of feature description and extraction, current 3D model retrieval algorithms focus on the global features of 3D models but ignore the combination of global and local features of the model. For this reason, they show less effective performance to the models with similar global shape and different local shape. This paper proposes a novel algorithm for 3D model retrieval based on mesh segmentation. The key idea is to exact the structure feature and the local shape feature of 3D models, and then to compares the similarities of the two characteristics and the total similarity between the models. A system that realizes this approach was built and tested on a database of 200 objects and achieves expected results. The results show that the proposed algorithm improves the precision and the recall rate effectively.

Different Mechanisms of Soil Microbial Response to Global Change Result in Different Outcomes in the MIMICS-CN Model

NASA Astrophysics Data System (ADS)

Kyker-Snowman, E.; Wieder, W. R.; Grandy, S.

2017-12-01

Microbial-explicit models of soil carbon (C) and nitrogen (N) cycling have improved upon simulations of C and N stocks and flows at site-to-global scales relative to traditional first-order linear models. However, the response of microbial-explicit soil models to global change factors depends upon which parameters and processes in a model are altered by those factors. We used the MIcrobial-MIneral Carbon Stabilization Model with coupled N cycling (MIMICS-CN) to compare modeled responses to changes in temperature and plant inputs at two previously-modeled sites (Harvard Forest and Kellogg Biological Station). We spun the model up to equilibrium, applied each perturbation, and evaluated 15 years of post-perturbation C and N pools and fluxes. To model the effect of increasing temperatures, we independently examined the impact of decreasing microbial C use efficiency (CUE), increasing the rate of microbial turnover, and increasing Michaelis-Menten kinetic rates of litter decomposition, plus several combinations of the three. For plant inputs, we ran simulations with stepwise increases in metabolic litter, structural litter, whole litter (structural and metabolic), or labile soil C. The cumulative change in soil C or N varied in both sign and magnitude across simulations. For example, increasing kinetic rates of litter decomposition resulted in net releases of both C and N from soil pools, while decreasing CUE produced short-term increases in respiration but long-term accumulation of C in litter pools and shifts in soil C:N as microbial demand for C increased and biomass declined. Given that soil N cycling constrains the response of plant productivity to global change and that soils generate a large amount of uncertainty in current earth system models, microbial-explicit models are a critical opportunity to advance the modeled representation of soils. However, microbial-explicit models must be improved by experiments to isolate the physiological and stoichiometric parameters of soil microbes that shift under global change.

Analysis of composite plates by using mechanics of structure genome and comparison with ANSYS

NASA Astrophysics Data System (ADS)

Zhao, Banghua

Motivated by a recently discovered concept, Structure Genome (SG) which is defined as the smallest mathematical building block of a structure, a new approach named Mechanics of Structure Genome (MSG) to model and analyze composite plates is introduced. MSG is implemented in a general-purpose code named SwiftComp(TM), which provides the constitutive models needed in structural analysis by homogenization and pointwise local fields by dehomogenization. To improve the user friendliness of SwiftComp(TM), a simple graphic user interface (GUI) based on ANSYS Mechanical APDL platform, called ANSYS-SwiftComp GUI is developed, which provides a convenient way to create some common SG models or arbitrary customized SG models in ANSYS and invoke SwiftComp(TM) to perform homogenization and dehomogenization. The global structural analysis can also be handled in ANSYS after homogenization, which could predict the global behavior and provide needed inputs for dehomogenization. To demonstrate the accuracy and efficiency of the MSG approach, several numerical cases are studied and compared using both MSG and ANSYS. In the ANSYS approach, 3D solid element models (ANSYS 3D approach) are used as reference models and the 2D shell element models created by ANSYS Composite PrepPost (ACP approach) are compared with the MSG approach. The results of the MSG approach agree well with the ANSYS 3D approach while being as efficient as the ACP approach. Therefore, the MSG approach provides an efficient and accurate new way to model composite plates.

One technique for refining the global Earth gravity models

NASA Astrophysics Data System (ADS)

Koneshov, V. N.; Nepoklonov, V. B.; Polovnev, O. V.

2017-01-01

The results of the theoretical and experimental research on the technique for refining the global Earth geopotential models such as EGM2008 in the continental regions are presented. The discussed technique is based on the high-resolution satellite data for the Earth's surface topography which enables the allowance for the fine structure of the Earth's gravitational field without the additional gravimetry data. The experimental studies are conducted by the example of the new GGMplus global gravity model of the Earth with a resolution about 0.5 km, which is obtained by expanding the EGM2008 model to degree 2190 with the corrections for the topograohy calculated from the SRTM data. The GGMplus and EGM2008 models are compared with the regional geoid models in 21 regions of North America, Australia, Africa, and Europe. The obtained estimates largely support the possibility of refining the global geopotential models such as EGM2008 by the procedure implemented in GGMplus, particularly in the regions with relatively high elevation difference.

Implications of incorporating N cycling and N limitations on primary production in an individual-based dynamic vegetation model

NASA Astrophysics Data System (ADS)

Smith, B.; Wårlind, D.; Arneth, A.; Hickler, T.; Leadley, P.; Siltberg, J.; Zaehle, S.

2013-11-01

The LPJ-GUESS dynamic vegetation model uniquely combines an individual- and patch-based representation of vegetation dynamics with ecosystem biogeochemical cycling from regional to global scales. We present an updated version that includes plant and soil N dynamics, analysing the implications of accounting for C-N interactions on predictions and performance of the model. Stand structural dynamics and allometric scaling of tree growth suggested by global databases of forest stand structure and development were well-reproduced by the model in comparison to an earlier multi-model study. Accounting for N cycle dynamics improved the goodness-of-fit for broadleaved forests. N limitation associated with low N mineralisation rates reduces productivity of cold-climate and dry-climate ecosystems relative to mesic temperate and tropical ecosystems. In a model experiment emulating free-air CO2 enrichment (FACE) treatment for forests globally, N-limitation associated with low N mineralisation rates of colder soils reduces CO2-enhancement of NPP for boreal forests, while some temperate and tropical forests exhibit increased NPP enhancement. Under a business-as-usual future climate and emissions scenario, ecosystem C storage globally was projected to increase by c. 10%; additional N requirements to match this increasing ecosystem C were within the high N supply limit estimated on stoichiometric grounds in an earlier study. Our results highlight the importance of accounting for C-N interactions not only in studies of global terrestrial C cycling, but to understand underlying mechanisms on local scales and in different regional contexts.

Implications of incorporating N cycling and N limitations on primary production in an individual-based dynamic vegetation model

NASA Astrophysics Data System (ADS)

Smith, B.; Wårlind, D.; Arneth, A.; Hickler, T.; Leadley, P.; Siltberg, J.; Zaehle, S.

2014-04-01

The LPJ-GUESS dynamic vegetation model uniquely combines an individual- and patch-based representation of vegetation dynamics with ecosystem biogeochemical cycling from regional to global scales. We present an updated version that includes plant and soil N dynamics, analysing the implications of accounting for C-N interactions on predictions and performance of the model. Stand structural dynamics and allometric scaling of tree growth suggested by global databases of forest stand structure and development were well reproduced by the model in comparison to an earlier multi-model study. Accounting for N cycle dynamics improved the goodness of fit for broadleaved forests. N limitation associated with low N-mineralisation rates reduces productivity of cold-climate and dry-climate ecosystems relative to mesic temperate and tropical ecosystems. In a model experiment emulating free-air CO2 enrichment (FACE) treatment for forests globally, N limitation associated with low N-mineralisation rates of colder soils reduces CO2 enhancement of net primary production (NPP) for boreal forests, while some temperate and tropical forests exhibit increased NPP enhancement. Under a business-as-usual future climate and emissions scenario, ecosystem C storage globally was projected to increase by ca. 10%; additional N requirements to match this increasing ecosystem C were within the high N supply limit estimated on stoichiometric grounds in an earlier study. Our results highlight the importance of accounting for C-N interactions in studies of global terrestrial N cycling, and as a basis for understanding mechanisms on local scales and in different regional contexts.

Seismic modeling of Earth's 3D structure: Recent advancements

NASA Astrophysics Data System (ADS)

Ritsema, J.

2008-12-01

Global models of Earth's seismic structure continue to improve due to the growth of seismic data sets, implementation of advanced wave propagations theories, and increased computational power. In my presentation, I will summarize seismic tomography results from the past 5-10 years. I will compare the most recent P and S velocity models, discuss model resolution and model interpretation, and present an, admittedly biased, list of research directions required to develop the next generation 3D models.

Neglected chronic disease: The WHO framework on non-communicable diseases and implications for the global poor.

PubMed

Nulu, Shanti

2017-04-01

The current global framework on noncommunicable disease (NCD), as exemplified by the WHO Action Plan of 2012, neglects the needs of the global poor. The current framework is rooted in an outdated pseudo-evolutionary theory of epidemiologic transition, which weds NCDs to modernity, and relies on global aggregate data. It is oriented around a simplistic causal model of behaviour, risk and disease, which implicitly locates 'risk' within individuals, conveniently drawing attention away from important global drivers of the NCD epidemic. In fact, the epidemiologic realities of the bottom billion reveal a burden of neglected chronic diseases that are associated with 'alternative' environmental and infectious risks that are largely structurally determined. In addition, the vertical orientation of the framework fails to centralise health systems and delivery issues that are essential to chronic disease prevention and treatment. A new framework oriented around a global health equity perspective would be able to correct some of the failures of the current model by bringing the needs of the global poor to the forefront, and centralising health systems and delivery. In addition, core social science concepts such as Bordieu's habitus may be useful to re-conceptualising strategies that may address both behavioural and structural determinants of health.

Research and development activities in unified control-structure modeling and design

NASA Technical Reports Server (NTRS)

Nayak, A. P.

1985-01-01

Results of work to develop a unified control/structures modeling and design capability for large space structures modeling are presented. Recent analytical results are presented to demonstrate the significant interdependence between structural and control properties. A new design methodology is suggested in which the structure, material properties, dynamic model and control design are all optimized simultaneously. Parallel research done by other researchers is reviewed. The development of a methodology for global design optimization is recommended as a long-term goal. It is suggested that this methodology should be incorporated into computer aided engineering programs, which eventually will be supplemented by an expert system to aid design optimization.

Plasma sheet low-entropy flow channels and dipolarization fronts from macro to micro scales: Global MHD and PIC simulations

NASA Astrophysics Data System (ADS)

Merkin, V. G.; Wiltberger, M. J.; Sitnov, M. I.; Lyon, J.

2016-12-01

Observations show that much of plasma and magnetic flux transport in the magnetotail occurs in the form of discrete activations such as bursty bulk flows (BBFs). These flow structures are typically associated with strong peaks of the Z-component of the magnetic field normal to the magnetotail current sheet (dipolarization fronts, DFs), as well as density and flux tube entropy depletions also called plasma bubbles. Extensive observational analysis of these structures has been carried out using data from Geotail spacecraft and more recently from Cluster, THEMIS, and MMS multi-probe missions. Global magnetohydrodynamic (MHD) simulations of the magnetosphere reveal similar plasma sheet flow bursts, in agreement with regional MHD and particle-in-cell (PIC) models. We present results of high-resolution simulations using the Lyon-Fedder-Mobarry (LFM) global MHD model and analyze the properties of the bursty flows including their structure and evolution as they propagate from the mid-tail region into the inner magnetosphere. We highlight similarities and differences with the corresponding observations and discuss comparative properties of plasma bubbles and DFs in our global MHD simulations with their counterparts in 3D PIC simulations.

Predicting Consumer Biomass, Size-Structure, Production, Catch Potential, Responses to Fishing and Associated Uncertainties in the World's Marine Ecosystems.

PubMed

Jennings, Simon; Collingridge, Kate

2015-01-01

Existing estimates of fish and consumer biomass in the world's oceans are disparate. This creates uncertainty about the roles of fish and other consumers in biogeochemical cycles and ecosystem processes, the extent of human and environmental impacts and fishery potential. We develop and use a size-based macroecological model to assess the effects of parameter uncertainty on predicted consumer biomass, production and distribution. Resulting uncertainty is large (e.g. median global biomass 4.9 billion tonnes for consumers weighing 1 g to 1000 kg; 50% uncertainty intervals of 2 to 10.4 billion tonnes; 90% uncertainty intervals of 0.3 to 26.1 billion tonnes) and driven primarily by uncertainty in trophic transfer efficiency and its relationship with predator-prey body mass ratios. Even the upper uncertainty intervals for global predictions of consumer biomass demonstrate the remarkable scarcity of marine consumers, with less than one part in 30 million by volume of the global oceans comprising tissue of macroscopic animals. Thus the apparently high densities of marine life seen in surface and coastal waters and frequently visited abundance hotspots will likely give many in society a false impression of the abundance of marine animals. Unexploited baseline biomass predictions from the simple macroecological model were used to calibrate a more complex size- and trait-based model to estimate fisheries yield and impacts. Yields are highly dependent on baseline biomass and fisheries selectivity. Predicted global sustainable fisheries yield increases ≈4 fold when smaller individuals (< 20 cm from species of maximum mass < 1 kg) are targeted in all oceans, but the predicted yields would rarely be accessible in practice and this fishing strategy leads to the collapse of larger species if fishing mortality rates on different size classes cannot be decoupled. Our analyses show that models with minimal parameter demands that are based on a few established ecological principles can support equitable analysis and comparison of diverse ecosystems. The analyses provide insights into the effects of parameter uncertainty on global biomass and production estimates, which have yet to be achieved with complex models, and will therefore help to highlight priorities for future research and data collection. However, the focus on simple model structures and global processes means that non-phytoplankton primary production and several groups, structures and processes of ecological and conservation interest are not represented. Consequently, our simple models become increasingly less useful than more complex alternatives when addressing questions about food web structure and function, biodiversity, resilience and human impacts at smaller scales and for areas closer to coasts.

Subnetworks of percolation backbones to model karst systems around Tulum, Mexico

NASA Astrophysics Data System (ADS)

Hendrick, Martin; Renard, Philippe

2016-11-01

Karstic caves, which play a key role in groundwater transport, are often organized as complex connected networks resulting from the dissolution of carbonate rocks. In this work, we propose a new model to describe and study the structures of the two largest submersed karst networks in the world. Both of these networks are located in the area of Tulum (Quintana Roo, Mexico). In a previous work te{hendrick2016fractal} we showed that these networks behave as self-similar structures exhibiting well-defined scaling behaviours. In this paper, we suggest that these networks can be modeled using substructures of percolation clusters (θ-subnetworks) having similar structural behaviour (in terms of fractal dimension and conductivity exponent) to those observed in Tulum's karst networks. We show in addition that these θ-subnetworks correspond to structures that minimise a global function, where this global function includes energy dissipation by the viscous forces when water flows through the network, and the cost of network formation itself.

Improving Water Level and Soil Moisture Over Peatlands in a Global Land Modeling System

NASA Technical Reports Server (NTRS)

Bechtold, M.; De Lannoy, G. J. M.; Roose, D.; Reichle, R. H.; Koster, R. D.; Mahanama, S. P.

2017-01-01

New model structure for peatlands results in improved skill metrics (without any parameter calibration) Simulated surface soil moisture strongly affected by new model, but reliable soil moisture data lacking for validation.

Numerical modeling of the thin shallow solar dynamo

NASA Astrophysics Data System (ADS)

O'Bryan, J. B.; Jarboe, T. R.

2017-10-01

Nonlinear, numerical computation with the NIMROD code is used to explore and validate the thin shallow solar dynamo model [T.R. Jarboe et al. 2017], which explains the observed global temporal evolution (e.g. magnetic field reversal) and local surface structures (e.g. sunspots) of the sun. The key feature of this model is the presence and magnetic self-organization of global magnetic structures (GMS) lying just below the surface of the sun, which resemble 1D radial Taylor states of size comparable to the supergranule convection cells. First, we seek to validate the thin shallow solar dynamo model by reproducing the 11 year timescale for reversal of the solar magnetic field. Then, we seek to model formation of GMS from convection zone turbulence. Our computations simulate a slab covering a radial depth 3Mm and include differential rotation and gravity. Density, temperature, and resistivity profiles are taken from the Christensen-Dalsgaard model.

Global simulation of interactions between groundwater and terrestrial ecosystems

NASA Astrophysics Data System (ADS)

Braakhekke, M. C.; Rebel, K.; Dekker, S. C.; Smith, B.; Van Beek, L. P.; Sutanudjaja, E.; van Kampenhout, L.; Wassen, M. J.

2016-12-01

In many places in the world ecosystems are influenced by the presence of a shallow groundwater table. In these regions upward water flux due to capillary rise increases soil moisture availability in the root zone, which has strong positive effect on evapotranspiration. Additionally it has important consequences for vegetation dynamics and fluxes of carbon and nitrogen. Under water limited conditions shallow groundwater stimulates vegetation productivity, and soil organic matter decomposition while under saturated conditions groundwater may have a negative effect on these processes due to lack of oxygen. Furthermore, since plant species differ with respect to their root distribution, preference for moisture conditions, and resistance to oxygen stress, shallow groundwater also influences vegetation type. Finally, processes such as denitrification and methane production occur under strictly anaerobic conditions and are thus strongly influenced by moisture availability. Most global hydrological models and several land surface models simulate groundwater table dynamics and their effects on land surface processes. However, these models typically have relatively simplistic representation of vegetation and do not consider changes in vegetation type and structure and are therefore less suitable to represent effects of groundwater on biogeochemical fluxes. Dynamic global vegetation models (DGVMs), describe land surface from an ecological perspective, combining detailed description of vegetation dynamics and structure and biogeochemical processes. These models are thus more appropriate to simulate the ecological and biogeochemical effects of groundwater interactions. However, currently virtually all DGVMs ignore these effects, assuming that water tables are too deep to affect soil moisture in the root zone. We have implemented a tight coupling between the dynamic global ecosystem model LPJ-GUESS and the global hydrological model PCR-GLOBWB. Using this coupled model we aim to study the influence of shallow groundwater on terrestrial ecosystem processes. We will present results of global simulations to demonstrate the effects on C, N, and water fluxes.

Spatial and Temporal Signatures of Flux Transfer Events in Global Simulations of Magnetopause Dynamics

NASA Technical Reports Server (NTRS)

Kuznetsova, Maria M.; Sibeck, David Gary; Hesse, Michael; Berrios, David; Rastaetter, Lutz; Toth, Gabor; Gombosi, Tamas I.

2011-01-01

Flux transfer events (FTEs) were originally identified by transient bipolar variations of the magnetic field component normal to the nominal magnetopause centered on enhancements in the total magnetic field strength. Recent Cluster and THEMIS multi-point measurements provided a wide range of signatures that are interpreted as evidence for FTE passage (e.g., crater FTE's, traveling magnetic erosion regions). We use the global magnetohydrodynamic (MHD) code BATS-R-US developed at the University of Michigan to model the global three-dimensional structure and temporal evolution of FTEs during multi-spacecraft magnetopause crossing events. Comparison of observed and simulated signatures and sensitivity analysis of the results to the probe location will be presented. We will demonstrate a variety of observable signatures in magnetic field profile that depend on space probe location with respect to the FTE passage. The global structure of FTEs will be illustrated using advanced visualization tools developed at the Community Coordinated Modeling Center

Variability of Protein Structure Models from Electron Microscopy.

PubMed

Monroe, Lyman; Terashi, Genki; Kihara, Daisuke

2017-04-04

An increasing number of biomolecular structures are solved by electron microscopy (EM). However, the quality of structure models determined from EM maps vary substantially. To understand to what extent structure models are supported by information embedded in EM maps, we used two computational structure refinement methods to examine how much structures can be refined using a dataset of 49 maps with accompanying structure models. The extent of structure modification as well as the disagreement between refinement models produced by the two computational methods scaled inversely with the global and the local map resolutions. A general quantitative estimation of deviations of structures for particular map resolutions are provided. Our results indicate that the observed discrepancy between the deposited map and the refined models is due to the lack of structural information present in EM maps and thus these annotations must be used with caution for further applications. Copyright © 2017 Elsevier Ltd. All rights reserved.

Statistical analysis of modeling error in structural dynamic systems

NASA Technical Reports Server (NTRS)

Hasselman, T. K.; Chrostowski, J. D.

1990-01-01

The paper presents a generic statistical model of the (total) modeling error for conventional space structures in their launch configuration. Modeling error is defined as the difference between analytical prediction and experimental measurement. It is represented by the differences between predicted and measured real eigenvalues and eigenvectors. Comparisons are made between pre-test and post-test models. Total modeling error is then subdivided into measurement error, experimental error and 'pure' modeling error, and comparisons made between measurement error and total modeling error. The generic statistical model presented in this paper is based on the first four global (primary structure) modes of four different structures belonging to the generic category of Conventional Space Structures (specifically excluding large truss-type space structures). As such, it may be used to evaluate the uncertainty of predicted mode shapes and frequencies, sinusoidal response, or the transient response of other structures belonging to the same generic category.

Dynamic model updating based on strain mode shape and natural frequency using hybrid pattern search technique

NASA Astrophysics Data System (ADS)

Guo, Ning; Yang, Zhichun; Wang, Le; Ouyang, Yan; Zhang, Xinping

2018-05-01

Aiming at providing a precise dynamic structural finite element (FE) model for dynamic strength evaluation in addition to dynamic analysis. A dynamic FE model updating method is presented to correct the uncertain parameters of the FE model of a structure using strain mode shapes and natural frequencies. The strain mode shape, which is sensitive to local changes in structure, is used instead of the displacement mode for enhancing model updating. The coordinate strain modal assurance criterion is developed to evaluate the correlation level at each coordinate over the experimental and the analytical strain mode shapes. Moreover, the natural frequencies which provide the global information of the structure are used to guarantee the accuracy of modal properties of the global model. Then, the weighted summation of the natural frequency residual and the coordinate strain modal assurance criterion residual is used as the objective function in the proposed dynamic FE model updating procedure. The hybrid genetic/pattern-search optimization algorithm is adopted to perform the dynamic FE model updating procedure. Numerical simulation and model updating experiment for a clamped-clamped beam are performed to validate the feasibility and effectiveness of the present method. The results show that the proposed method can be used to update the uncertain parameters with good robustness. And the updated dynamic FE model of the beam structure, which can correctly predict both the natural frequencies and the local dynamic strains, is reliable for the following dynamic analysis and dynamic strength evaluation.

Time-series modeling and prediction of global monthly absolute temperature for environmental decision making

NASA Astrophysics Data System (ADS)

Ye, Liming; Yang, Guixia; Van Ranst, Eric; Tang, Huajun

2013-03-01

A generalized, structural, time series modeling framework was developed to analyze the monthly records of absolute surface temperature, one of the most important environmental parameters, using a deterministicstochastic combined (DSC) approach. Although the development of the framework was based on the characterization of the variation patterns of a global dataset, the methodology could be applied to any monthly absolute temperature record. Deterministic processes were used to characterize the variation patterns of the global trend and the cyclic oscillations of the temperature signal, involving polynomial functions and the Fourier method, respectively, while stochastic processes were employed to account for any remaining patterns in the temperature signal, involving seasonal autoregressive integrated moving average (SARIMA) models. A prediction of the monthly global surface temperature during the second decade of the 21st century using the DSC model shows that the global temperature will likely continue to rise at twice the average rate of the past 150 years. The evaluation of prediction accuracy shows that DSC models perform systematically well against selected models of other authors, suggesting that DSC models, when coupled with other ecoenvironmental models, can be used as a supplemental tool for short-term (˜10-year) environmental planning and decision making.

Decentralized control of large flexible structures by joint decoupling

NASA Technical Reports Server (NTRS)

Su, Tzu-Jeng; Juang, Jer-Nan

1992-01-01

A decentralized control design method is presented for large complex flexible structures by using the idea of joint decoupling. The derivation is based on a coupled substructure state-space model, which is obtained from enforcing conditions of interface compatibility and equilibrium to the substructure state-space models. It is shown that by restricting the control law to be localized state feedback and by setting the joint actuator input commands to decouple joint 'degrees of freedom' (dof) from interior dof, the global structure control design problem can be decomposed into several substructure control design problems. The substructure control gains and substructure observers are designed based on modified substructure state-space models. The controllers produced by the proposed method can operate successfully at the individual substructure level as well as at the global structure level. Therefore, not only control design but also control implementation is decentralized. Stability and performance requirement of the closed-loop system can be achieved by using any existing state feedback control design method. A two-component mass-spring damper system and a three-truss structure are used as examples to demonstrate the proposed method.

A Robust Response of Precipitation to Global Warming from CMIP5 Models

NASA Technical Reports Server (NTRS)

Lau, K. -M.; Wu, H. -T.; Kim, K. -M.

2012-01-01

How precipitation responds to global warming is a major concern to society and a challenge to climate change research. Based on analyses of rainfall probability distribution functions of 14 state-of-the-art climate models, we find a robust, canonical global rainfall response to a triple CO2 warming scenario, featuring 100 250% more heavy rain, 5-10% less moderate rain, and 10-15% more very light or no-rain events. Regionally, a majority of the models project a consistent response with more heavy rain events over climatologically wet regions of the deep tropics, and more dry events over subtropical and tropical land areas. Results suggest that increased CO2 emissions induce basic structural changes in global rain systems, increasing risks of severe floods and droughts in preferred geographic locations worldwide.

Modeling the Global Coronal Field with Simulated Synoptic Magnetograms from Earth and the Lagrange Points L3, L4, and L5

NASA Astrophysics Data System (ADS)

Petrie, Gordon; Pevtsov, Alexei; Schwarz, Andrew; DeRosa, Marc

2018-06-01

The solar photospheric magnetic flux distribution is key to structuring the global solar corona and heliosphere. Regular full-disk photospheric magnetogram data are therefore essential to our ability to model and forecast heliospheric phenomena such as space weather. However, our spatio-temporal coverage of the photospheric field is currently limited by our single vantage point at/near Earth. In particular, the polar fields play a leading role in structuring the large-scale corona and heliosphere, but each pole is unobservable for {>} 6 months per year. Here we model the possible effect of full-disk magnetogram data from the Lagrange points L4 and L5, each extending longitude coverage by 60°. Adding data also from the more distant point L3 extends the longitudinal coverage much further. The additional vantage points also improve the visibility of the globally influential polar fields. Using a flux-transport model for the solar photospheric field, we model full-disk observations from Earth/L1, L3, L4, and L5 over a solar cycle, construct synoptic maps using a novel weighting scheme adapted for merging magnetogram data from multiple viewpoints, and compute potential-field models for the global coronal field. Each additional viewpoint brings the maps and models into closer agreement with the reference field from the flux-transport simulation, with particular improvement at polar latitudes, the main source of the fast solar wind.

Vertical resolution of baroclinic modes in global ocean models

NASA Astrophysics Data System (ADS)

Stewart, K. D.; Hogg, A. McC.; Griffies, S. M.; Heerdegen, A. P.; Ward, M. L.; Spence, P.; England, M. H.

2017-05-01

Improvements in the horizontal resolution of global ocean models, motivated by the horizontal resolution requirements for specific flow features, has advanced modelling capabilities into the dynamical regime dominated by mesoscale variability. In contrast, the choice of the vertical grid remains a subjective choice, and it is not clear that efforts to improve vertical resolution adequately support their horizontal counterparts. Indeed, considering that the bulk of the vertical ocean dynamics (including convection) are parameterized, it is not immediately obvious what the vertical grid is supposed to resolve. Here, we propose that the primary purpose of the vertical grid in a hydrostatic ocean model is to resolve the vertical structure of horizontal flows, rather than to resolve vertical motion. With this principle we construct vertical grids based on their abilities to represent baroclinic modal structures commensurate with the theoretical capabilities of a given horizontal grid. This approach is designed to ensure that the vertical grids of global ocean models complement (and, importantly, to not undermine) the resolution capabilities of the horizontal grid. We find that for z-coordinate global ocean models, at least 50 well-positioned vertical levels are required to resolve the first baroclinic mode, with an additional 25 levels per subsequent mode. High-resolution ocean-sea ice simulations are used to illustrate some of the dynamical enhancements gained by improving the vertical resolution of a 1/10° global ocean model. These enhancements include substantial increases in the sea surface height variance (∼30% increase south of 40°S), the barotropic and baroclinic eddy kinetic energies (up to 200% increase on and surrounding the Antarctic continental shelf and slopes), and the overturning streamfunction in potential density space (near-tripling of the Antarctic Bottom Water cell at 65°S).

Clusternomics: Integrative context-dependent clustering for heterogeneous datasets

PubMed Central

Wernisch, Lorenz

2017-01-01

Integrative clustering is used to identify groups of samples by jointly analysing multiple datasets describing the same set of biological samples, such as gene expression, copy number, methylation etc. Most existing algorithms for integrative clustering assume that there is a shared consistent set of clusters across all datasets, and most of the data samples follow this structure. However in practice, the structure across heterogeneous datasets can be more varied, with clusters being joined in some datasets and separated in others. In this paper, we present a probabilistic clustering method to identify groups across datasets that do not share the same cluster structure. The proposed algorithm, Clusternomics, identifies groups of samples that share their global behaviour across heterogeneous datasets. The algorithm models clusters on the level of individual datasets, while also extracting global structure that arises from the local cluster assignments. Clusters on both the local and the global level are modelled using a hierarchical Dirichlet mixture model to identify structure on both levels. We evaluated the model both on simulated and on real-world datasets. The simulated data exemplifies datasets with varying degrees of common structure. In such a setting Clusternomics outperforms existing algorithms for integrative and consensus clustering. In a real-world application, we used the algorithm for cancer subtyping, identifying subtypes of cancer from heterogeneous datasets. We applied the algorithm to TCGA breast cancer dataset, integrating gene expression, miRNA expression, DNA methylation and proteomics. The algorithm extracted clinically meaningful clusters with significantly different survival probabilities. We also evaluated the algorithm on lung and kidney cancer TCGA datasets with high dimensionality, again showing clinically significant results and scalability of the algorithm. PMID:29036190

Clusternomics: Integrative context-dependent clustering for heterogeneous datasets.

PubMed

Gabasova, Evelina; Reid, John; Wernisch, Lorenz

2017-10-01

Integrative clustering is used to identify groups of samples by jointly analysing multiple datasets describing the same set of biological samples, such as gene expression, copy number, methylation etc. Most existing algorithms for integrative clustering assume that there is a shared consistent set of clusters across all datasets, and most of the data samples follow this structure. However in practice, the structure across heterogeneous datasets can be more varied, with clusters being joined in some datasets and separated in others. In this paper, we present a probabilistic clustering method to identify groups across datasets that do not share the same cluster structure. The proposed algorithm, Clusternomics, identifies groups of samples that share their global behaviour across heterogeneous datasets. The algorithm models clusters on the level of individual datasets, while also extracting global structure that arises from the local cluster assignments. Clusters on both the local and the global level are modelled using a hierarchical Dirichlet mixture model to identify structure on both levels. We evaluated the model both on simulated and on real-world datasets. The simulated data exemplifies datasets with varying degrees of common structure. In such a setting Clusternomics outperforms existing algorithms for integrative and consensus clustering. In a real-world application, we used the algorithm for cancer subtyping, identifying subtypes of cancer from heterogeneous datasets. We applied the algorithm to TCGA breast cancer dataset, integrating gene expression, miRNA expression, DNA methylation and proteomics. The algorithm extracted clinically meaningful clusters with significantly different survival probabilities. We also evaluated the algorithm on lung and kidney cancer TCGA datasets with high dimensionality, again showing clinically significant results and scalability of the algorithm.

Application of TOPEX/Poseidon altimetry to ocean dynamics and geophysics

NASA Technical Reports Server (NTRS)

Douglas, Bruce; Cheney, R.; Miller, L.; Mcadoo, D.; Leetmaa, A.; Schopf, P.; Schwiderski, E. W.

1991-01-01

We will analyze the TOPEX/POSEIDON data using techniques developed for Geosat, although the more accurate TOPEX/POSEIDON data will enable a wider range of problems to be addressed. Our proposed investigations will have five distinct areas: (1) a description of global sea level variability; (2) tropical ocean dynamics; (3) coupled models for El Nino prediction; (4) structure of the lithosphere; and (5) global tide model improvement.

Models of the Joint Structure of Domain-Related and Global Distress: Implications for the Reconciliation of Quality of Life and Mental Health Perspectives

ERIC Educational Resources Information Center

Magee, William; St-Arnaud, Sebastien

2012-01-01

Research on subjective wellbeing includes studies of both domain-related and global distress. The mental health literature, though, focuses almost exclusively on global distress. This seems to be partly due to a common belief that psychological distress, and the moods that comprise distress, necessarily lack referential content. However, if that…

An efficient algorithm for global periodic orbits generation near irregular-shaped asteroids

NASA Astrophysics Data System (ADS)

Shang, Haibin; Wu, Xiaoyu; Ren, Yuan; Shan, Jinjun

2017-07-01

Periodic orbits (POs) play an important role in understanding dynamical behaviors around natural celestial bodies. In this study, an efficient algorithm was presented to generate the global POs around irregular-shaped uniformly rotating asteroids. The algorithm was performed in three steps, namely global search, local refinement, and model continuation. First, a mascon model with a low number of particles and optimized mass distribution was constructed to remodel the exterior gravitational potential of the asteroid. Using this model, a multi-start differential evolution enhanced with a deflection strategy with strong global exploration and bypassing abilities was adopted. This algorithm can be regarded as a search engine to find multiple globally optimal regions in which potential POs were located. This was followed by applying a differential correction to locally refine global search solutions and generate the accurate POs in the mascon model in which an analytical Jacobian matrix was derived to improve convergence. Finally, the concept of numerical model continuation was introduced and used to convert the POs from the mascon model into a high-fidelity polyhedron model by sequentially correcting the initial states. The efficiency of the proposed algorithm was substantiated by computing the global POs around an elongated shoe-shaped asteroid 433 Eros. Various global POs with different topological structures in the configuration space were successfully located. Specifically, the proposed algorithm was generic and could be conveniently extended to explore periodic motions in other gravitational systems.

The 1/ N Expansion of Tensor Models with Two Symmetric Tensors

NASA Astrophysics Data System (ADS)

Gurau, Razvan

2018-06-01

It is well known that tensor models for a tensor with no symmetry admit a 1/ N expansion dominated by melonic graphs. This result relies crucially on identifying jackets, which are globally defined ribbon graphs embedded in the tensor graph. In contrast, no result of this kind has so far been established for symmetric tensors because global jackets do not exist. In this paper we introduce a new approach to the 1/ N expansion in tensor models adapted to symmetric tensors. In particular we do not use any global structure like the jackets. We prove that, for any rank D, a tensor model with two symmetric tensors and interactions the complete graph K D+1 admits a 1/ N expansion dominated by melonic graphs.

Neocortical dynamics due to axon propagation delays in cortico-cortical fibers: EEG traveling and standing waves with implications for top-down influences on local networks and white matter disease

PubMed Central

Nunez, Paul L.; Srinivasan, Ramesh

2013-01-01

The brain is treated as a nested hierarchical complex system with substantial interactions across spatial scales. Local networks are pictured as embedded within global fields of synaptic action and action potentials. Global fields may act top-down on multiple networks, acting to bind remote networks. Because of scale-dependent properties, experimental electrophysiology requires both local and global models that match observational scales. Multiple local alpha rhythms are embedded in a global alpha rhythm. Global models are outlined in which cm-scale dynamic behaviors result largely from propagation delays in cortico-cortical axons and cortical background excitation level, controlled by neuromodulators on long time scales. The idealized global models ignore the bottom-up influences of local networks on global fields so as to employ relatively simple mathematics. The resulting models are transparently related to several EEG and steady state visually evoked potentials correlated with cognitive states, including estimates of neocortical coherence structure, traveling waves, and standing waves. The global models suggest that global oscillatory behavior of self-sustained (limit-cycle) modes lower than about 20 Hz may easily occur in neocortical/white matter systems provided: Background cortical excitability is sufficiently high; the strength of long cortico-cortical axon systems is sufficiently high; and the bottom-up influence of local networks on the global dynamic field is sufficiently weak. The global models provide "entry points" to more detailed studies of global top-down influences, including binding of weakly connected networks, modulation of gamma oscillations by theta or alpha rhythms, and the effects of white matter deficits. PMID:24505628

Tropical Tree Trait Diversity Enhances Forest Biomass Resilience in a Dynamic Global Vegetation Model

NASA Astrophysics Data System (ADS)

Sakschewski, B.; Kirsten, T.; von Bloh, W.; Poorter, L.; Pena-Claros, M.; Boit, A.

2016-12-01

Functional diversity of ecosystems has been found to increase ecosystem functions and therefore enhance ecosystem resilience against environmental stressors. However, global carbon-cycle and biosphere models still classify the global vegetation into a relatively small number of distinct plant functional types (PFT) with constant features over space and time. Therefore, those models might underestimate the resilience and adaptive capacity of natural vegetation under climate change by ignoring positive effects that functional diversity might bring about. We diversified a set a of selected tree traits in a dynamic global vegetation model (LPJmL). In the new subversion, called LPJmL-FIT, Amazon region biomass stocks and forest structure appear significantly more resilient against climate change. Enhanced tree trait diversity enables the simulated rainforests to adjust to new environmental conditions via ecological sorting. These results may stimulate a new debate on the value of biodiversity for climate change mitigation.

Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication

PubMed Central

Stetz, Gabrielle; Verkhivker, Gennady M.

2017-01-01

Allosteric interactions in the Hsp70 proteins are linked with their regulatory mechanisms and cellular functions. Despite significant progress in structural and functional characterization of the Hsp70 proteins fundamental questions concerning modularity of the allosteric interaction networks and hierarchy of signaling pathways in the Hsp70 chaperones remained largely unexplored and poorly understood. In this work, we proposed an integrated computational strategy that combined atomistic and coarse-grained simulations with coevolutionary analysis and network modeling of the residue interactions. A novel aspect of this work is the incorporation of dynamic residue correlations and coevolutionary residue dependencies in the construction of allosteric interaction networks and signaling pathways. We found that functional sites involved in allosteric regulation of Hsp70 may be characterized by structural stability, proximity to global hinge centers and local structural environment that is enriched by highly coevolving flexible residues. These specific characteristics may be necessary for regulation of allosteric structural transitions and could distinguish regulatory sites from nonfunctional conserved residues. The observed confluence of dynamics correlations and coevolutionary residue couplings with global networking features may determine modular organization of allosteric interactions and dictate localization of key mediating sites. Community analysis of the residue interaction networks revealed that concerted rearrangements of local interacting modules at the inter-domain interface may be responsible for global structural changes and a population shift in the DnaK chaperone. The inter-domain communities in the Hsp70 structures harbor the majority of regulatory residues involved in allosteric signaling, suggesting that these sites could be integral to the network organization and coordination of structural changes. Using a network-based formalism of allostery, we introduced a community-hopping model of allosteric communication. Atomistic reconstruction of signaling pathways in the DnaK structures captured a direction-specific mechanism and molecular details of signal transmission that are fully consistent with the mutagenesis experiments. The results of our study reconciled structural and functional experiments from a network-centric perspective by showing that global properties of the residue interaction networks and coevolutionary signatures may be linked with specificity and diversity of allosteric regulation mechanisms. PMID:28095400

Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.

PubMed

Stetz, Gabrielle; Verkhivker, Gennady M

2017-01-01

Allosteric interactions in the Hsp70 proteins are linked with their regulatory mechanisms and cellular functions. Despite significant progress in structural and functional characterization of the Hsp70 proteins fundamental questions concerning modularity of the allosteric interaction networks and hierarchy of signaling pathways in the Hsp70 chaperones remained largely unexplored and poorly understood. In this work, we proposed an integrated computational strategy that combined atomistic and coarse-grained simulations with coevolutionary analysis and network modeling of the residue interactions. A novel aspect of this work is the incorporation of dynamic residue correlations and coevolutionary residue dependencies in the construction of allosteric interaction networks and signaling pathways. We found that functional sites involved in allosteric regulation of Hsp70 may be characterized by structural stability, proximity to global hinge centers and local structural environment that is enriched by highly coevolving flexible residues. These specific characteristics may be necessary for regulation of allosteric structural transitions and could distinguish regulatory sites from nonfunctional conserved residues. The observed confluence of dynamics correlations and coevolutionary residue couplings with global networking features may determine modular organization of allosteric interactions and dictate localization of key mediating sites. Community analysis of the residue interaction networks revealed that concerted rearrangements of local interacting modules at the inter-domain interface may be responsible for global structural changes and a population shift in the DnaK chaperone. The inter-domain communities in the Hsp70 structures harbor the majority of regulatory residues involved in allosteric signaling, suggesting that these sites could be integral to the network organization and coordination of structural changes. Using a network-based formalism of allostery, we introduced a community-hopping model of allosteric communication. Atomistic reconstruction of signaling pathways in the DnaK structures captured a direction-specific mechanism and molecular details of signal transmission that are fully consistent with the mutagenesis experiments. The results of our study reconciled structural and functional experiments from a network-centric perspective by showing that global properties of the residue interaction networks and coevolutionary signatures may be linked with specificity and diversity of allosteric regulation mechanisms.

Towards large-scale mapping of urban three-dimensional structure using Landsat imagery and global elevation datasets

NASA Astrophysics Data System (ADS)

Wang, P.; Huang, C.

2017-12-01

The three-dimensional (3D) structure of buildings and infrastructures is fundamental to understanding and modelling of the impacts and challenges of urbanization in terms of energy use, carbon emissions, and earthquake vulnerabilities. However, spatially detailed maps of urban 3D structure have been scarce, particularly in fast-changing developing countries. We present here a novel methodology to map the volume of buildings and infrastructures at 30 meter resolution using a synergy of Landsat imagery and openly available global digital surface models (DSMs), including the Shuttle Radar Topography Mission (SRTM), ASTER Global Digital Elevation Map (GDEM), ALOS World 3D - 30m (AW3D30), and the recently released global DSM from the TanDEM-X mission. Our method builds on the concept of object-based height profile to extract height metrics from the DSMs and use a machine learning algorithm to predict height and volume from the height metrics. We have tested this algorithm in the entire England and assessed our result using Lidar measurements in 25 England cities. Our initial assessments achieved a RMSE of 1.4 m (R2 = 0.72) for building height and a RMSE of 1208.7 m3 (R2 = 0.69) for building volume, demonstrating the potential of large-scale applications and fully automated mapping of urban structure.

Research Synthesis Methods in an Age of Globalized Risks: Lessons from the Global Burden of Foodborne Disease Expert Elicitation.

PubMed

2016-02-01

We live in an age that increasingly calls for national or regional management of global risks. This article discusses the contributions that expert elicitation can bring to efforts to manage global risks and identifies challenges faced in conducting expert elicitation at this scale. In doing so it draws on lessons learned from conducting an expert elicitation as part of the World Health Organizations (WHO) initiative to estimate the global burden of foodborne disease; a study commissioned by the Foodborne Disease Epidemiology Reference Group (FERG). Expert elicitation is designed to fill gaps in data and research using structured, transparent methods. Such gaps are a significant challenge for global risk modeling. Experience with the WHO FERG expert elicitation shows that it is feasible to conduct an expert elicitation at a global scale, but that challenges do arise, including: defining an informative, yet feasible geographical structure for the elicitation; defining what constitutes expertise in a global setting; structuring international, multidisciplinary expert panels; and managing demands on experts' time in the elicitation. This article was written as part of a workshop, "Methods for Research Synthesis: A Cross-Disciplinary Approach" held at the Harvard Center for Risk Analysis on October 13, 2013. © 2016 Society for Risk Analysis.

Evaluating the responses of forest ecosystems to climate change and CO2 using dynamic global vegetation models.

PubMed

Song, Xiang; Zeng, Xiaodong

2017-02-01

The climate has important influences on the distribution and structure of forest ecosystems, which may lead to vital feedback to climate change. However, much of the existing work focuses on the changes in carbon fluxes or water cycles due to climate change and/or atmospheric CO 2 , and few studies have considered how and to what extent climate change and CO 2 influence the ecosystem structure (e.g., fractional coverage change) and the changes in the responses of ecosystems with different characteristics. In this work, two dynamic global vegetation models (DGVMs): IAP-DGVM coupled with CLM3 and CLM4-CNDV, were used to investigate the response of the forest ecosystem structure to changes in climate (temperature and precipitation) and CO 2 concentration. In the temperature sensitivity tests, warming reduced the global area-averaged ecosystem gross primary production in the two models, which decreased global forest area. Furthermore, the changes in tree fractional coverage (Δ F tree ; %) from the two models were sensitive to the regional temperature and ecosystem structure, i.e., the mean annual temperature (MAT; °C) largely determined whether Δ F tree was positive or negative, while the tree fractional coverage ( F tree ; %) played a decisive role in the amplitude of Δ F tree around the globe, and the dependence was more remarkable in IAP-DGVM. In cases with precipitation change, F tree had a uniformly positive relationship with precipitation, especially in the transition zones of forests (30% <  F tree  < 60%) for IAP-DGVM and in semiarid and arid regions for CLM4-CNDV. Moreover, Δ F tree had a stronger dependence on F tree than on the mean annual precipitation (MAP; mm/year). It was also demonstrated that both models captured the fertilization effects of the CO 2 concentration.

How mesoscopic staircases condense to macroscopic barriers in confined plasma turbulence

NASA Astrophysics Data System (ADS)

Ashourvan, Arash; Diamond, P. H.

2016-11-01

This Rapid Communication sets forth the mechanism by which mesoscale staircase structures condense to form macroscopic states of enhanced confinement. Density, vorticity, and turbulent potential enstrophy are the variables for this model. Formation of the staircase structures is due to inhomogeneous mixing of (generalized) potential vorticity (PV). Such mixing results in the local sharpening of density and vorticity gradients. When PV gradients steepen, the density staircase structure develops into a lattice of mesoscale "jumps" and "steps," which are, respectively, regions of local gradient steepening and flattening. The jumps then merge and migrate in radius, leading to the emergence of a new macroscale profile structure, so indicating that profile self-organization is a global process, which may be described by a local, but nonlinear model. This work predicts and demonstrates how mesoscale condensation of staircases leads to global states of enhanced confinement.

Marine geophysics. New global marine gravity model from CryoSat-2 and Jason-1 reveals buried tectonic structure.

PubMed

Sandwell, David T; Müller, R Dietmar; Smith, Walter H F; Garcia, Emmanuel; Francis, Richard

2014-10-03

Gravity models are powerful tools for mapping tectonic structures, especially in the deep ocean basins where the topography remains unmapped by ships or is buried by thick sediment. We combined new radar altimeter measurements from satellites CryoSat-2 and Jason-1 with existing data to construct a global marine gravity model that is two times more accurate than previous models. We found an extinct spreading ridge in the Gulf of Mexico, a major propagating rift in the South Atlantic Ocean, abyssal hill fabric on slow-spreading ridges, and thousands of previously uncharted seamounts. These discoveries allow us to understand regional tectonic processes and highlight the importance of satellite-derived gravity models as one of the primary tools for the investigation of remote ocean basins. Copyright © 2014, American Association for the Advancement of Science.

Time-dependent MHD modeling of the global structure of the heliosphere

NASA Technical Reports Server (NTRS)

Liewer, P. C.; Brackbill, J. U.; Karmesin, S. Roy

1995-01-01

We present results from time-dependent modeling of the global structure of the heliosphere with neutral and magnetic field effects included. The magnetic field is assumed parallel to the interstellar flow in this two-dimensional axisymmetric model; the neutrals are treated as a fluid. The effects of interstellar neutrals and the interplanetary magnetic field on the location of the termination shock are studied using the most recent estimate of the interstellar medium parameters, results will be compared to those of Baranov and Zaitsev. The effect of the solar wind - VLISM interaction on the density and velocity of interstellar neutrals within the heliosphere will also be presented and related to observations. The response of the termination shock to the solar cycle variation in the solar wind will be compared to the response found previously using an axisymmetric hydrodynamic model without neutrals.

Formal Provenance Representation of the Data and Information Supporting the National Climate Assessment

NASA Technical Reports Server (NTRS)

Tilmes, Curt

2014-01-01

The Global Change Information System (GCIS) provides a framework for the formal representation of structured metadata about data and information about global change. The pilot deployment of the system supports the National Climate Assessment (NCA), a major report of the U.S. Global Change Research Program (USGCRP). A consumer of that report can use the system to browse and explore that supporting information. Additionally, capturing that information into a structured data model and presenting it in standard formats through well defined open inter- faces, including query interfaces suitable for data mining and linking with other databases, the information becomes valuable for other analytic uses as well.

The influence of lateral Earth structure on glacial isostatic adjustment in Greenland

NASA Astrophysics Data System (ADS)

Milne, Glenn A.; Latychev, Konstantin; Schaeffer, Andrew; Crowley, John W.; Lecavalier, Benoit S.; Audette, Alexandre

2018-05-01

We present the first results that focus on the influence of lateral Earth structure on Greenland glacial isostatic adjustment (GIA) using a model that can explicitly incorporate 3-D Earth structure. In total, eight realisations of lateral viscosity structure were developed using four global seismic velocity models and two global lithosphere (elastic) thickness models. Our results show that lateral viscosity structure has a significant influence on model output of both deglacial relative sea level (RSL) changes and present-day rates of vertical land motion. For example, lateral structure changes the RSL predictions in the Holocene by several 10 s of metres in many locations relative to the 1-D case. Modelled rates of vertical land motion are also significantly affected, with differences from the 1-D case commonly at the mm/yr level and exceeding 2 mm/yr in some locations. The addition of lateral structure was unable to account for previously identified data-model RSL misfits in northern and southern Greenland, suggesting limitations in the adopted ice model (Lecavalier et al. 2014) and/or the existence of processes not included in our model. Our results show large data-model discrepancies in uplift rates when applying a 1-D viscosity model tuned to fit the RSL data; these discrepancies cannot be reconciled by adding the realisations of lateral structure considered here. In many locations, the spread in model output for the eight different 3-D Earth models is of similar amplitude or larger than the influence of lateral structure (as defined by the average of all eight model runs). This reflects the differences between the four seismic and two lithosphere models used and implies a large uncertainty in defining the GIA signal given that other aspects that contribute to this uncertainty (e.g. scaling from seismic velocity to viscosity) were not considered in this study. In order to reduce this large model uncertainty, an important next step is to develop more accurate constraints on Earth structure beneath Greenland based on regional geophysical data sets.

Global properties of physically interesting Lorentzian spacetimes

NASA Astrophysics Data System (ADS)

Nawarajan, Deloshan; Visser, Matt

Under normal circumstances most members of the general relativity community focus almost exclusively on the local properties of spacetime, such as the locally Euclidean structure of the manifold and the Lorentzian signature of the metric tensor. When combined with the classical Einstein field equations this gives an extremely successful empirical model of classical gravity and classical matter — at least as long as one does not ask too many awkward questions about global issues, (such as global topology and global causal structure). We feel however that this is a tactical error — even without invoking full-fledged “quantum gravity” we know that the standard model of particle physics is also an extremely good representation of some parts of empirical reality; and we had better be able to carry over all the good features of the standard model of particle physics — at least into the realm of semi-classical quantum gravity. Doing so gives us some interesting global features that spacetime should possess: On physical grounds spacetime should be space-orientable, time-orientable, and spacetime-orientable, and it should possess a globally defined tetrad (vierbein, or in general a globally defined vielbein/n-bein). So on physical grounds spacetime should be parallelizable. This strongly suggests that the metric is not the fundamental physical quantity; a very good case can be made for the tetrad being more fundamental than the metric. Furthermore, a globally-defined “almost complex structure” is almost unavoidable. Ideas along these lines have previously been mooted, but much is buried in the pre-arXiv literature and is either forgotten or inaccessible. We shall revisit these ideas taking a perspective very much based on empirical physical observation.

Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis.

PubMed

Houston, Simon; Lithgow, Karen Vivien; Osbak, Kara Krista; Kenyon, Chris Richard; Cameron, Caroline E

2018-05-16

Syphilis continues to be a major global health threat with 11 million new infections each year, and a global burden of 36 million cases. The causative agent of syphilis, Treponema pallidum subspecies pallidum, is a highly virulent bacterium, however the molecular mechanisms underlying T. pallidum pathogenesis remain to be definitively identified. This is due to the fact that T. pallidum is currently uncultivatable, inherently fragile and thus difficult to work with, and phylogenetically distinct with no conventional virulence factor homologs found in other pathogens. In fact, approximately 30% of its predicted protein-coding genes have no known orthologs or assigned functions. Here we employed a structural bioinformatics approach using Phyre2-based tertiary structure modeling to improve our understanding of T. pallidum protein function on a proteome-wide scale. Phyre2-based tertiary structure modeling generated high-confidence predictions for 80% of the T. pallidum proteome (780/978 predicted proteins). Tertiary structure modeling also inferred the same function as primary structure-based annotations from genome sequencing pipelines for 525/605 proteins (87%), which represents 54% (525/978) of all T. pallidum proteins. Of the 175 T. pallidum proteins modeled with high confidence that were not assigned functions in the previously annotated published proteome, 167 (95%) were able to be assigned predicted functions. Twenty-one of the 175 hypothetical proteins modeled with high confidence were also predicted to exhibit significant structural similarity with proteins experimentally confirmed to be required for virulence in other pathogens. Phyre2-based structural modeling is a powerful bioinformatics tool that has provided insight into the potential structure and function of the majority of T. pallidum proteins and helped validate the primary structure-based annotation of more than 50% of all T. pallidum proteins with high confidence. This work represents the first T. pallidum proteome-wide structural modeling study and is one of few studies to apply this approach for the functional annotation of a whole proteome.

Network Ecology and Adolescent Social Structure

PubMed Central

McFarland, Daniel A.; Moody, James; Diehl, David; Smith, Jeffrey A.; Thomas, Reuben J.

2014-01-01

Adolescent societies—whether arising from weak, short-term classroom friendships or from close, long-term friendships—exhibit various levels of network clustering, segregation, and hierarchy. Some are rank-ordered caste systems and others are flat, cliquish worlds. Explaining the source of such structural variation remains a challenge, however, because global network features are generally treated as the agglomeration of micro-level tie-formation mechanisms, namely balance, homophily, and dominance. How do the same micro-mechanisms generate significant variation in global network structures? To answer this question we propose and test a network ecological theory that specifies the ways features of organizational environments moderate the expression of tie-formation processes, thereby generating variability in global network structures across settings. We develop this argument using longitudinal friendship data on schools (Add Health study) and classrooms (Classroom Engagement study), and by extending exponential random graph models to the study of multiple societies over time. PMID:25535409

Network Ecology and Adolescent Social Structure.

PubMed

McFarland, Daniel A; Moody, James; Diehl, David; Smith, Jeffrey A; Thomas, Reuben J

2014-12-01

Adolescent societies-whether arising from weak, short-term classroom friendships or from close, long-term friendships-exhibit various levels of network clustering, segregation, and hierarchy. Some are rank-ordered caste systems and others are flat, cliquish worlds. Explaining the source of such structural variation remains a challenge, however, because global network features are generally treated as the agglomeration of micro-level tie-formation mechanisms, namely balance, homophily, and dominance. How do the same micro-mechanisms generate significant variation in global network structures? To answer this question we propose and test a network ecological theory that specifies the ways features of organizational environments moderate the expression of tie-formation processes, thereby generating variability in global network structures across settings. We develop this argument using longitudinal friendship data on schools (Add Health study) and classrooms (Classroom Engagement study), and by extending exponential random graph models to the study of multiple societies over time.

Ab Initio Protein Structure Assembly Using Continuous Structure Fragments and Optimized Knowledge-based Force Field

PubMed Central

Xu, Dong; Zhang, Yang

2012-01-01

Ab initio protein folding is one of the major unsolved problems in computational biology due to the difficulties in force field design and conformational search. We developed a novel program, QUARK, for template-free protein structure prediction. Query sequences are first broken into fragments of 1–20 residues where multiple fragment structures are retrieved at each position from unrelated experimental structures. Full-length structure models are then assembled from fragments using replica-exchange Monte Carlo simulations, which are guided by a composite knowledge-based force field. A number of novel energy terms and Monte Carlo movements are introduced and the particular contributions to enhancing the efficiency of both force field and search engine are analyzed in detail. QUARK prediction procedure is depicted and tested on the structure modeling of 145 non-homologous proteins. Although no global templates are used and all fragments from experimental structures with template modeling score (TM-score) >0.5 are excluded, QUARK can successfully construct 3D models of correct folds in 1/3 cases of short proteins up to 100 residues. In the ninth community-wide Critical Assessment of protein Structure Prediction (CASP9) experiment, QUARK server outperformed the second and third best servers by 18% and 47% based on the cumulative Z-score of global distance test-total (GDT-TS) scores in the free modeling (FM) category. Although ab initio protein folding remains a significant challenge, these data demonstrate new progress towards the solution of the most important problem in the field. PMID:22411565

Global Efficiency of Structural Networks Mediates Cognitive Control in Mild Cognitive Impairment

PubMed Central

Berlot, Rok; Metzler-Baddeley, Claudia; Ikram, M. Arfan; Jones, Derek K.; O’Sullivan, Michael J.

2016-01-01

Background: Cognitive control has been linked to both the microstructure of individual tracts and the structure of whole-brain networks, but their relative contributions in health and disease remain unclear. Objective: To determine the contribution of both localized white matter tract damage and disruption of global network architecture to cognitive control, in older age and Mild Cognitive Impairment (MCI). Materials and Methods: Twenty-five patients with MCI and 20 age, sex, and intelligence-matched healthy volunteers were investigated with 3 Tesla structural magnetic resonance imaging (MRI). Cognitive control and episodic memory were evaluated with established tests. Structural network graphs were constructed from diffusion MRI-based whole-brain tractography. Their global measures were calculated using graph theory. Regression models utilized both global network metrics and microstructure of specific connections, known to be critical for each domain, to predict cognitive scores. Results: Global efficiency and the mean clustering coefficient of networks were reduced in MCI. Cognitive control was associated with global network topology. Episodic memory, in contrast, correlated with individual temporal tracts only. Relationships between cognitive control and network topology were attenuated by addition of single tract measures to regression models, consistent with a partial mediation effect. The mediation effect was stronger in MCI than healthy volunteers, explaining 23-36% of the effect of cingulum microstructure on cognitive control performance. Network clustering was a significant mediator in the relationship between tract microstructure and cognitive control in both groups. Conclusion: The status of critical connections and large-scale network topology are both important for maintenance of cognitive control in MCI. Mediation via large-scale networks is more important in patients with MCI than healthy volunteers. This effect is domain-specific, and true for cognitive control but not for episodic memory. Interventions to improve cognitive control will need to address both dysfunction of local circuitry and global network architecture to be maximally effective. PMID:28018208

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field.

PubMed

Xu, Dong; Zhang, Yang

2012-07-01

Ab initio protein folding is one of the major unsolved problems in computational biology owing to the difficulties in force field design and conformational search. We developed a novel program, QUARK, for template-free protein structure prediction. Query sequences are first broken into fragments of 1-20 residues where multiple fragment structures are retrieved at each position from unrelated experimental structures. Full-length structure models are then assembled from fragments using replica-exchange Monte Carlo simulations, which are guided by a composite knowledge-based force field. A number of novel energy terms and Monte Carlo movements are introduced and the particular contributions to enhancing the efficiency of both force field and search engine are analyzed in detail. QUARK prediction procedure is depicted and tested on the structure modeling of 145 nonhomologous proteins. Although no global templates are used and all fragments from experimental structures with template modeling score >0.5 are excluded, QUARK can successfully construct 3D models of correct folds in one-third cases of short proteins up to 100 residues. In the ninth community-wide Critical Assessment of protein Structure Prediction experiment, QUARK server outperformed the second and third best servers by 18 and 47% based on the cumulative Z-score of global distance test-total scores in the FM category. Although ab initio protein folding remains a significant challenge, these data demonstrate new progress toward the solution of the most important problem in the field. Copyright © 2012 Wiley Periodicals, Inc.

Self-organizing Large-scale Structures in Earth's Foreshock Waves

NASA Astrophysics Data System (ADS)

Ganse, U.; Pfau-Kempf, Y.; Turc, L.; Hoilijoki, S.; von Alfthan, S.; Vainio, R. O.; Palmroth, M.

2017-12-01

Earth's foreshock is populated by plasma waves in the ULF regime, assumed to be caused by wave instabilities of shock-reflected particle beams. While in-situ observation of these waves has provided plentiful data of their amplitudes, frequencies, obliquities and relation to local plasma conditions, global-scale structures are hard to grasp from observation data alone. The hybrid-Vlasov simulation system Vlasiator, designed for kinetic modeling of the Earth's magnetosphere, has been employed to study foreshock formation under radial and near-radial IMF conditions on global scales. Structures arising in the foreshock can be comprehensively studied and directly compared to observation results. Our modeling results show that foreshock waves present emergent large-scale structures, in which regions of waves with similar phase exist. At the interfaces of these regions ("spines") we observe high wave obliquity, higher beam densities and lower beam velocities than inside them. We characterize these apparently self-organizing structures through the interplay between wave- and beam properties and present the microphysical mechanisms involved in their creation.

Emergence of the bifurcation structure of a Langmuir-Blodgett transfer model

NASA Astrophysics Data System (ADS)

Köpf, Michael H.; Thiele, Uwe

2014-11-01

We explore the bifurcation structure of a modified Cahn-Hilliard equation that describes a system that may undergo a first-order phase transition and is kept permanently out of equilibrium by a lateral driving. This forms a simple model, e.g., for the deposition of stripe patterns of different phases of surfactant molecules through Langmuir-Blodgett transfer. Employing continuation techniques the bifurcation structure is numerically investigated using the non-dimensional transfer velocity as the main control parameter. It is found that the snaking structure of steady front states is intertwined with a large number of branches of time-periodic solutions that emerge from Hopf or period-doubling bifurcations and end in global bifurcations (sniper and homoclinic). Overall the bifurcation diagram has a harp-like appearance. This is complemented by a two-parameter study in non-dimensional transfer velocity and domain size (as a measure of the distance to the phase transition threshold) that elucidates through which local and global codimension 2 bifurcations the entire harp-like structure emerges.

MERIT DEM: A new high-accuracy global digital elevation model and its merit to global hydrodynamic modeling

NASA Astrophysics Data System (ADS)

Yamazaki, D.; Ikeshima, D.; Neal, J. C.; O'Loughlin, F.; Sampson, C. C.; Kanae, S.; Bates, P. D.

2017-12-01

Digital Elevation Models (DEM) are fundamental data for flood modelling. While precise airborne DEMs are available in developed regions, most parts of the world rely on spaceborne DEMs which include non-negligible height errors. Here we show the most accurate global DEM to date at 90m resolution by eliminating major error components from the SRTM and AW3D DEMs. Using multiple satellite data and multiple filtering techniques, we addressed absolute bias, stripe noise, speckle noise and tree height bias from spaceborne DEMs. After the error removal, significant improvements were found in flat regions where height errors were larger than topography variability, and landscapes features such as river networks and hill-valley structures became clearly represented. We found the topography slope of the previous DEMs was largely distorted in most of world major floodplains (e.g. Ganges, Nile, Niger, Mekong) and swamp forests (e.g. Amazon, Congo, Vasyugan). The developed DEM will largely reduce the uncertainty in both global and regional flood modelling.

Evaluation of Boreal Summer Monsoon Intraseasonal Variability in the GASS-YOTC Multi-Model Physical Processes Experiment

NASA Astrophysics Data System (ADS)

Mani, N. J.; Waliser, D. E.; Jiang, X.

2014-12-01

While the boreal summer monsoon intraseasonal variability (BSISV) exerts profound influence on the south Asian monsoon, the capability of present day dynamical models in simulating and predicting the BSISV is still limited. The global model evaluation project on vertical structure and diabatic processes of the Madden Julian Oscillations (MJO) is a joint venture, coordinated by the Working Group on Numerical Experimentation (WGNE) MJO Task Force and GEWEX Atmospheric System Study (GASS) program, for assessing the model deficiencies in simulating the ISV and for improving our understanding of the underlying processes. In this study the simulation of the northward propagating BSISV is investigated in 26 climate models with special focus on the vertical diabatic heating structure and clouds. Following parallel lines of inquiry as the MJO Task Force has done with the eastward propagating MJO, we utilize previously proposed and newly developed model performance metrics and process diagnostics and apply them to the global climate model simulations of BSISV.

Robust distributed model predictive control of linear systems with structured time-varying uncertainties

NASA Astrophysics Data System (ADS)

Zhang, Langwen; Xie, Wei; Wang, Jingcheng

2017-11-01

In this work, synthesis of robust distributed model predictive control (MPC) is presented for a class of linear systems subject to structured time-varying uncertainties. By decomposing a global system into smaller dimensional subsystems, a set of distributed MPC controllers, instead of a centralised controller, are designed. To ensure the robust stability of the closed-loop system with respect to model uncertainties, distributed state feedback laws are obtained by solving a min-max optimisation problem. The design of robust distributed MPC is then transformed into solving a minimisation optimisation problem with linear matrix inequality constraints. An iterative online algorithm with adjustable maximum iteration is proposed to coordinate the distributed controllers to achieve a global performance. The simulation results show the effectiveness of the proposed robust distributed MPC algorithm.

An elastic-plastic contact model for line contact structures

NASA Astrophysics Data System (ADS)

Zhu, Haibin; Zhao, Yingtao; He, Zhifeng; Zhang, Ruinan; Ma, Shaopeng

2018-06-01

Although numerical simulation tools are now very powerful, the development of analytical models is very important for the prediction of the mechanical behaviour of line contact structures for deeply understanding contact problems and engineering applications. For the line contact structures widely used in the engineering field, few analytical models are available for predicting the mechanical behaviour when the structures deform plastically, as the classic Hertz's theory would be invalid. Thus, the present study proposed an elastic-plastic model for line contact structures based on the understanding of the yield mechanism. A mathematical expression describing the global relationship between load history and contact width evolution of line contact structures was obtained. The proposed model was verified through an actual line contact test and a corresponding numerical simulation. The results confirmed that this model can be used to accurately predict the elastic-plastic mechanical behaviour of a line contact structure.

Progress and challenges in global mantle attenuation tomography (Invited)

NASA Astrophysics Data System (ADS)

Romanowicz, B. A.

2009-12-01

Global anelastic tomography has lagged behind elastic tomography, because of the difficulty to separate elastic and anelastic effects accumulated in the amplitudes of seismic waves as they propagate long distances through the heterogeneous mantle. Specifically, amplitudes are very sensitive to scattering and lateral gradients in elastic structure. Until now, these gradients - or the short wavelength features of elastic models - have not been tightly enough constrained due to a combination of (1) use of approximate wave propagation theories; (2) necessary damping due to incomplete coverage and bandwidth. Different schemes have been designed to circumvent these shortcomings in attenuation tomography, which limit resolution to long wavelengths and introduce large uncertainties in the estimation of the strength of lateral variations in attenuation. We review the robust information on anelastic structure available so far from first and second generation global upper mantle models. We discuss improvements that can be expected with, in particular, the availability of accurate numerical schemes for wave propagation in a 3D elastic earth, as well as the associated challenges, and prospects for unraveling the 3D attenuation structure of the lower mantle.

Ecogeography, genetics, and the evolution of human body form.

PubMed

Roseman, Charles C; Auerbach, Benjamin M

2015-01-01

Genetic resemblances among groups are non-randomly distributed in humans. This population structure may influence the correlations between traits and environmental drivers of natural selection thus complicating the interpretation of the fossil record when modern human variation is used as a referential model. In this paper, we examine the effects of population structure and natural selection on postcranial traits that reflect body size and shape with application to the more general issue of how climate - using latitude as a proxy - has influenced hominin morphological variation. We compare models that include terms reflecting population structure, ascertained from globally distributed microsatellite data, and latitude on postcranial phenotypes derived from skeletal dimensions taken from a large global sample of modern humans. We find that models with a population structure term fit better than a model of natural selection along a latitudinal cline in all cases. A model including both latitude and population structure terms is a good fit to distal limb element lengths and bi-iliac breadth, indicating that multiple evolutionary forces shaped these morphologies. In contrast, a model that included only a population structure term best explained femoral head diameter and the crural index. The results demonstrate that population structure is an important part of human postcranial variation, and that clinally distributed natural selection is not sufficient to explain among-group differentiation. The distribution of human body form is strongly influenced by the contingencies of modern human origins, which calls for new ways to approach problems in the evolution of human variation, past and present. Copyright © 2014 Elsevier Ltd. All rights reserved.

Numerical and analytical investigation towards performance enhancement of a newly developed rockfall protective cable-net structure

NASA Astrophysics Data System (ADS)

Dhakal, S.; Bhandary, N. P.; Yatabe, R.; Kinoshita, N.

2012-04-01

In a previous companion paper, we presented a three-tier modelling of a particular type of rockfall protective cable-net structure (barrier), developed newly in Japan. Therein, we developed a three-dimensional, Finite Element based, nonlinear numerical model having been calibrated/back-calculated and verified with the element- and structure-level physical tests. Moreover, using a very simple, lumped-mass, single-degree-of-freedom, equivalently linear analytical model, a global-displacement-predictive correlation was devised by modifying the basic equation - obtained by combining the principles of conservation of linear momentum and energy - based on the back-analysis of the tests on the numerical model. In this paper, we use the developed models to explore the performance enhancement potential of the structure in terms of (a) the control of global displacement - possibly the major performance criterion for the proposed structure owing to a narrow space available in the targeted site, and (b) the increase in energy dissipation by the existing U-bolt-type Friction-brake Devices - which are identified to have performed weakly when integrated into the structure. A set of parametric investigations have revealed correlations to achieve the first objective in terms of the structure's mass, particularly by manipulating the wire-net's characteristics, and has additionally disclosed the effects of the impacting-block's parameters. Towards achieving the second objective, another set of parametric investigations have led to a proposal of a few innovative improvements in the constitutive behaviour (model) of the studied brake device (dissipator), in addition to an important recommendation of careful handling of the device based on the identified potential flaw.

Modal simulation of gearbox vibration with experimental correlation

NASA Technical Reports Server (NTRS)

Choy, Fred K.; Ruan, Yeefeng F.; Zakrajsek, James J.; Oswald, Fred B.

1992-01-01

A newly developed global dynamic model was used to simulate the dynamics of a gear noise rig at NASA Lewis Research Center. Experimental results from the test rig were used to verify the analytical model. In this global dynamic model, the number of degrees of freedom of the system are reduced by transforming the system equations of motion into modal coordinates. The vibration of the individual gear-shaft system are coupled through the gear mesh forces. A three-dimensional, axial-lateral coupled, bearing model was used to couple the casing structural vibration to the gear-rotor dynamics. The coupled system of modal equations is solved to predict the resulting vibration at several locations on the test rig. Experimental vibration data was compared to the predictions of the global dynamic model. There is excellent agreement between the vibration results from analysis and experiment.

Sensitivity analysis of a wing aeroelastic response

NASA Technical Reports Server (NTRS)

Kapania, Rakesh K.; Eldred, Lloyd B.; Barthelemy, Jean-Francois M.

1991-01-01

A variation of Sobieski's Global Sensitivity Equations (GSE) approach is implemented to obtain the sensitivity of the static aeroelastic response of a three-dimensional wing model. The formulation is quite general and accepts any aerodynamics and structural analysis capability. An interface code is written to convert one analysis's output to the other's input, and visa versa. Local sensitivity derivatives are calculated by either analytic methods or finite difference techniques. A program to combine the local sensitivities, such as the sensitivity of the stiffness matrix or the aerodynamic kernel matrix, into global sensitivity derivatives is developed. The aerodynamic analysis package FAST, using a lifting surface theory, and a structural package, ELAPS, implementing Giles' equivalent plate model are used.

High Resolution Global Climate Modeling with GEOS-5: Intense Precipitation, Convection and Tropical Cyclones on Seasonal Time-Scales.

NASA Technical Reports Server (NTRS)

Putnam, WilliamM.

2011-01-01

In 2008 the World Modeling Summit for Climate Prediction concluded that "climate modeling will need-and is ready-to move to fundamentally new high-resolution approaches to capitalize on the seamlessness of the weather-climate continuum." Following from this, experimentation with very high-resolution global climate modeling has gained enhanced priority within many modeling groups and agencies. The NASA Goddard Earth Observing System model (GEOS-5) has been enhanced to provide a capability for the execution at the finest horizontal resolutions POS,SIOle with a global climate model today. Using this high-resolution, non-hydrostatic version of GEOS-5, we have developed a unique capability to explore the intersection of weather and climate within a seamless prediction system. Week-long weather experiments, to mUltiyear climate simulations at global resolutions ranging from 3.5- to 14-km have demonstrated the predictability of extreme events including severe storms along frontal systems, extra-tropical storms, and tropical cyclones. The primary benefits of high resolution global models will likely be in the tropics, with better predictions of the genesis stages of tropical cyclones and of the internal structure of their mature stages. Using satellite data we assess the accuracy of GEOS-5 in representing extreme weather phenomena, and their interaction within the global climate on seasonal time-scales. The impacts of convective parameterization and the frequency of coupling between the moist physics and dynamics are explored in terms of precipitation intensity and the representation of deep convection. We will also describe the seasonal variability of global tropical cyclone activity within a global climate model capable of representing the most intense category 5 hurricanes.

Distributed digital signal processors for multi-body flexible structures

NASA Technical Reports Server (NTRS)

Lee, Gordon K. F.

1992-01-01

Multi-body flexible structures, such as those currently under investigation in spacecraft design, are large scale (high-order) dimensional systems. Controlling and filtering such structures is a computationally complex problem. This is particularly important when many sensors and actuators are located along the structure and need to be processed in real time. This report summarizes research activity focused on solving the signal processing (that is, information processing) issues of multi-body structures. A distributed architecture is developed in which single loop processors are employed for local filtering and control. By implementing such a philosophy with an embedded controller configuration, a supervising controller may be used to process global data and make global decisions as the local devices are processing local information. A hardware testbed, a position controller system for a servo motor, is employed to illustrate the capabilities of the embedded controller structure. Several filtering and control structures which can be modeled as rational functions can be implemented on the system developed in this research effort. Thus the results of the study provide a support tool for many Control/Structure Interaction (CSI) NASA testbeds such as the Evolutionary model and the nine-bay truss structure.

Confidence Intervals for a Semiparametric Approach to Modeling Nonlinear Relations among Latent Variables

ERIC Educational Resources Information Center

Pek, Jolynn; Losardo, Diane; Bauer, Daniel J.

2011-01-01

Compared to parametric models, nonparametric and semiparametric approaches to modeling nonlinearity between latent variables have the advantage of recovering global relationships of unknown functional form. Bauer (2005) proposed an indirect application of finite mixtures of structural equation models where latent components are estimated in the…

Predicting Consumer Biomass, Size-Structure, Production, Catch Potential, Responses to Fishing and Associated Uncertainties in the World’s Marine Ecosystems

PubMed Central

Jennings, Simon; Collingridge, Kate

2015-01-01

Existing estimates of fish and consumer biomass in the world’s oceans are disparate. This creates uncertainty about the roles of fish and other consumers in biogeochemical cycles and ecosystem processes, the extent of human and environmental impacts and fishery potential. We develop and use a size-based macroecological model to assess the effects of parameter uncertainty on predicted consumer biomass, production and distribution. Resulting uncertainty is large (e.g. median global biomass 4.9 billion tonnes for consumers weighing 1 g to 1000 kg; 50% uncertainty intervals of 2 to 10.4 billion tonnes; 90% uncertainty intervals of 0.3 to 26.1 billion tonnes) and driven primarily by uncertainty in trophic transfer efficiency and its relationship with predator-prey body mass ratios. Even the upper uncertainty intervals for global predictions of consumer biomass demonstrate the remarkable scarcity of marine consumers, with less than one part in 30 million by volume of the global oceans comprising tissue of macroscopic animals. Thus the apparently high densities of marine life seen in surface and coastal waters and frequently visited abundance hotspots will likely give many in society a false impression of the abundance of marine animals. Unexploited baseline biomass predictions from the simple macroecological model were used to calibrate a more complex size- and trait-based model to estimate fisheries yield and impacts. Yields are highly dependent on baseline biomass and fisheries selectivity. Predicted global sustainable fisheries yield increases ≈4 fold when smaller individuals (< 20 cm from species of maximum mass < 1kg) are targeted in all oceans, but the predicted yields would rarely be accessible in practice and this fishing strategy leads to the collapse of larger species if fishing mortality rates on different size classes cannot be decoupled. Our analyses show that models with minimal parameter demands that are based on a few established ecological principles can support equitable analysis and comparison of diverse ecosystems. The analyses provide insights into the effects of parameter uncertainty on global biomass and production estimates, which have yet to be achieved with complex models, and will therefore help to highlight priorities for future research and data collection. However, the focus on simple model structures and global processes means that non-phytoplankton primary production and several groups, structures and processes of ecological and conservation interest are not represented. Consequently, our simple models become increasingly less useful than more complex alternatives when addressing questions about food web structure and function, biodiversity, resilience and human impacts at smaller scales and for areas closer to coasts. PMID:26226590

SEMI-SUPERVISED OBJECT RECOGNITION USING STRUCTURE KERNEL

PubMed Central

Wang, Botao; Xiong, Hongkai; Jiang, Xiaoqian; Ling, Fan

2013-01-01

Object recognition is a fundamental problem in computer vision. Part-based models offer a sparse, flexible representation of objects, but suffer from difficulties in training and often use standard kernels. In this paper, we propose a positive definite kernel called “structure kernel”, which measures the similarity of two part-based represented objects. The structure kernel has three terms: 1) the global term that measures the global visual similarity of two objects; 2) the part term that measures the visual similarity of corresponding parts; 3) the spatial term that measures the spatial similarity of geometric configuration of parts. The contribution of this paper is to generalize the discriminant capability of local kernels to complex part-based object models. Experimental results show that the proposed kernel exhibit higher accuracy than state-of-art approaches using standard kernels. PMID:23666108

Predictive models of forest dynamics.

PubMed

Purves, Drew; Pacala, Stephen

2008-06-13

Dynamic global vegetation models (DGVMs) have shown that forest dynamics could dramatically alter the response of the global climate system to increased atmospheric carbon dioxide over the next century. But there is little agreement between different DGVMs, making forest dynamics one of the greatest sources of uncertainty in predicting future climate. DGVM predictions could be strengthened by integrating the ecological realities of biodiversity and height-structured competition for light, facilitated by recent advances in the mathematics of forest modeling, ecological understanding of diverse forest communities, and the availability of forest inventory data.

HANFORD DST THERMAL & SEISMIC PROJECT ANSYS BENCHMARK ANALYSIS OF SEISMIC INDUCED FLUID STRUCTURE INTERACTION IN A HANFORD DOUBLE SHELL PRIMARY TANK

DOE Office of Scientific and Technical Information (OSTI.GOV)

MACKEY, T.C.

M&D Professional Services, Inc. (M&D) is under subcontract to Pacific Northwest National Laboratories (PNNL) to perform seismic analysis of the Hanford Site Double-Shell Tanks (DSTs) in support of a project entitled ''Double-Shell Tank (DSV Integrity Project-DST Thermal and Seismic Analyses)''. The overall scope of the project is to complete an up-to-date comprehensive analysis of record of the DST System at Hanford in support of Tri-Party Agreement Milestone M-48-14. The work described herein was performed in support of the seismic analysis of the DSTs. The thermal and operating loads analysis of the DSTs is documented in Rinker et al. (2004). Themore » overall seismic analysis of the DSTs is being performed with the general-purpose finite element code ANSYS. The overall model used for the seismic analysis of the DSTs includes the DST structure, the contained waste, and the surrounding soil. The seismic analysis of the DSTs must address the fluid-structure interaction behavior and sloshing response of the primary tank and contained liquid. ANSYS has demonstrated capabilities for structural analysis, but the capabilities and limitations of ANSYS to perform fluid-structure interaction are less well understood. The purpose of this study is to demonstrate the capabilities and investigate the limitations of ANSYS for performing a fluid-structure interaction analysis of the primary tank and contained waste. To this end, the ANSYS solutions are benchmarked against theoretical solutions appearing in BNL 1995, when such theoretical solutions exist. When theoretical solutions were not available, comparisons were made to theoretical solutions of similar problems and to the results from Dytran simulations. The capabilities and limitations of the finite element code Dytran for performing a fluid-structure interaction analysis of the primary tank and contained waste were explored in a parallel investigation (Abatt 2006). In conjunction with the results of the global ANSYS analysis reported in Carpenter et al. (2006), the results of the two investigations will be compared to help determine if a more refined sub-model of the primary tank is necessary to capture the important fluid-structure interaction effects in the tank and if so, how to best utilize a refined sub-model of the primary tank. Both rigid tank and flexible tank configurations were analyzed with ANSYS. The response parameters of interest are total hydrodynamic reaction forces, impulsive and convective mode frequencies, waste pressures, and slosh heights. To a limited extent: tank stresses are also reported. The results of this study demonstrate that the ANSYS model has the capability to adequately predict global responses such as frequencies and overall reaction forces. Thus, the model is suitable for predicting the global response of the tank and contained waste. On the other hand, while the ANSYS model is capable of adequately predicting waste pressures and primary tank stresses in a large portion of the waste tank, the model does not accurately capture the convective behavior of the waste near the free surface, nor did the model give accurate predictions of slosh heights. Based on the ability of the ANSYS benchmark model to accurately predict frequencies and global reaction forces and on the results presented in Abatt, et al. (2006), the global ANSYS model described in Carpenter et al. (2006) is sufficient for the seismic evaluation of all tank components except for local areas of the primary tank. Due to the limitations of the ANSYS model in predicting the convective response of the waste, the evaluation of primary tank stresses near the waste free surface should be supplemented by results from an ANSYS sub-model of the primary tank that incorporates pressures from theoretical solutions or from Dytran solutions. However, the primary tank is expected to have low demand to capacity ratios in the upper wall. Moreover, due to the less than desired mesh resolution in the primary tank knuckle of the global ANSYS model, the evaluation of the primary tank stresses in the lower knuckle should be supplemented by results from a more refined ANSYS sub-model of the primary tank that incorporates pressures from theoretical solutions or from Dytran solutions.« less

Simplified Models for the Study of Postbuckled Hat-Stiffened Composite Panels

NASA Technical Reports Server (NTRS)

Vescovini, Riccardo; Davila, Carlos G.; Bisagni, Chiara

2012-01-01

The postbuckling response and failure of multistringer stiffened panels is analyzed using models with three levels of approximation. The first model uses a relatively coarse mesh to capture the global postbuckling response of a five-stringer panel. The second model can predict the nonlinear response as well as the debonding and crippling failure mechanisms in a single stringer compression specimen (SSCS). The third model consists of a simplified version of the SSCS that is designed to minimize the computational effort. The simplified model is well-suited to perform sensitivity analyses for studying the phenomena that lead to structural collapse. In particular, the simplified model is used to obtain a deeper understanding of the role played by geometric and material modeling parameters such as mesh size, inter-laminar strength, fracture toughness, and fracture mode mixity. Finally, a global/local damage analysis method is proposed in which a detailed local model is used to scan the global model to identify the locations that are most critical for damage tolerance.

Application of firefly algorithm to the dynamic model updating problem

NASA Astrophysics Data System (ADS)

Shabbir, Faisal; Omenzetter, Piotr

2015-04-01

Model updating can be considered as a branch of optimization problems in which calibration of the finite element (FE) model is undertaken by comparing the modal properties of the actual structure with these of the FE predictions. The attainment of a global solution in a multi dimensional search space is a challenging problem. The nature-inspired algorithms have gained increasing attention in the previous decade for solving such complex optimization problems. This study applies the novel Firefly Algorithm (FA), a global optimization search technique, to a dynamic model updating problem. This is to the authors' best knowledge the first time FA is applied to model updating. The working of FA is inspired by the flashing characteristics of fireflies. Each firefly represents a randomly generated solution which is assigned brightness according to the value of the objective function. The physical structure under consideration is a full scale cable stayed pedestrian bridge with composite bridge deck. Data from dynamic testing of the bridge was used to correlate and update the initial model by using FA. The algorithm aimed at minimizing the difference between the natural frequencies and mode shapes of the structure. The performance of the algorithm is analyzed in finding the optimal solution in a multi dimensional search space. The paper concludes with an investigation of the efficacy of the algorithm in obtaining a reference finite element model which correctly represents the as-built original structure.

MULTIVARIATE LINEAR MIXED MODELS FOR MULTIPLE OUTCOMES. (R824757)

EPA Science Inventory

We propose a multivariate linear mixed (MLMM) for the analysis of multiple outcomes, which generalizes the latent variable model of Sammel and Ryan. The proposed model assumes a flexible correlation structure among the multiple outcomes, and allows a global test of the impact of ...

Librations and tides of icy satellites: model comparison for Enceladus

NASA Astrophysics Data System (ADS)

Trinh, A.; Van Hoolst, T.; Baland, R. M.; Beuthe, M.; Rivoldini, A.; Dehant, V. M. A.

2015-12-01

The latest measurements of the librations of Enceladus suggest that it could have a global subsurface ocean or a non-hydrostatic core (Thomas et al. 2014). Further observations should constrain the properties of the ice shell, and similar insights are expected from future investigation of Europa and Ganymede.Detailed models of the librations and tides are therefore required to properly interpret these measurements in terms of interior structure. Here we compare the `classical', separate tide and libration models (where spherical symmetry is assumed to compute the tides, Van Hoolst et al. 2013) with our combined tide+libration model (Trinh et al. 2013), both extended to account for non-hydrostatic structure.Even with a global ocean, different mechanisms act to prevent Enceladus's shell from moving independently from the rest. Among those, pressure coupling across the flattened boundaries of the ocean requires special care if the shape is not fully relaxed. We discuss how it should be modelled in the classical approach to be consistent with the combined model.

Global Arrays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krishnamoorthy, Sriram; Daily, Jeffrey A.; Vishnu, Abhinav

2015-11-01

Global Arrays (GA) is a distributed-memory programming model that allows for shared-memory-style programming combined with one-sided communication, to create a set of tools that combine high performance with ease-of-use. GA exposes a relatively straightforward programming abstraction, while supporting fully-distributed data structures, locality of reference, and high-performance communication. GA was originally formulated in the early 1990’s to provide a communication layer for the Northwest Chemistry (NWChem) suite of chemistry modeling codes that was being developed concurrently.

Energy Finite Element Analysis Developments for Vibration Analysis of Composite Aircraft Structures

NASA Technical Reports Server (NTRS)

Vlahopoulos, Nickolas; Schiller, Noah H.

2011-01-01

The Energy Finite Element Analysis (EFEA) has been utilized successfully for modeling complex structural-acoustic systems with isotropic structural material properties. In this paper, a formulation for modeling structures made out of composite materials is presented. An approach based on spectral finite element analysis is utilized first for developing the equivalent material properties for the composite material. These equivalent properties are employed in the EFEA governing differential equations for representing the composite materials and deriving the element level matrices. The power transmission characteristics at connections between members made out of non-isotropic composite material are considered for deriving suitable power transmission coefficients at junctions of interconnected members. These coefficients are utilized for computing the joint matrix that is needed to assemble the global system of EFEA equations. The global system of EFEA equations is solved numerically and the vibration levels within the entire system can be computed. The new EFEA formulation for modeling composite laminate structures is validated through comparison to test data collected from a representative composite aircraft fuselage that is made out of a composite outer shell and composite frames and stiffeners. NASA Langley constructed the composite cylinder and conducted the test measurements utilized in this work.

Climate model simulations of the mid-Pliocene: Earth's last great interval of global warmth

USGS Publications Warehouse

Dolan, A.M.; Haywood, A.M.; Dowsett, H.J.

2012-01-01

Pliocene Model Intercomparison Project Workshop; Reston, Virginia, 2–4 August 2011 The Pliocene Model Intercomparison Project (PlioMIP), supported by the U.S. Geological Survey's (USGS) Pliocene Research, Interpretation and Synoptic Mapping (PRISM) project and Powell Center, is an integral part of a third iteration of the Paleoclimate Modelling Intercomparison Project (PMIP3). PlioMIP's aim is to systematically compare structurally different climate models. This is done in the context of the mid-Pliocene (~3.3–3.0 million years ago), a geological interval when the global annual mean temperature was similar to predictions for the next century.

Estimation of Global Subsurface Thermal Structure from Satellite Remote Sensing Observations Based on Machine Learning

NASA Astrophysics Data System (ADS)

Su, H.; Yan, X. H.

2017-12-01

Subsurface thermal structure of the global ocean is a key factor that reflects the impact of the global climate variability and change. Accurately determining and describing the global subsurface and deeper ocean thermal structure from satellite measurements is becoming even more important for understanding the ocean interior anomaly and dynamic processes during recent global warming and hiatus. It is essential but challenging to determine the extent to which such surface remote sensing observations can be used to develop information about the global ocean interior. This study proposed a Support Vector Regression (SVR) method to estimate Subsurface Temperature Anomaly (STA) in the global ocean. The SVR model can well estimate the global STA upper 1000 m through a suite of satellite remote sensing observations of sea surface parameters (including Sea Surface Height Anomaly (SSHA), Sea Surface Temperature Anomaly (SSTA), Sea Surface Salinity Anomaly (SSSA) and Sea Surface Wind Anomaly (SSWA)) with in situ Argo data for training and testing at different depth levels. Here, we employed the MSE and R2 to assess SVR performance on the STA estimation. The results from the SVR model were validated for the accuracy and reliability using the worldwide Argo STA data. The average MSE and R2 of the 15 levels are 0.0090 / 0.0086 / 0.0087 and 0.443 / 0.457 / 0.485 for 2-attributes (SSHA, SSTA) / 3-attributes (SSHA, SSTA, SSSA) / 4-attributes (SSHA, SSTA, SSSA, SSWA) SVR, respectively. The estimation accuracy was improved by including SSSA and SSWA for SVR input (MSE decreased by 0.4% / 0.3% and R2 increased by 1.4% / 4.2% on average). While, the estimation accuracy gradually decreased with the increase of the depth from 500 m. The results showed that SSSA and SSWA, in addition to SSTA and SSHA, are useful parameters that can help estimate the subsurface thermal structure, as well as improve the STA estimation accuracy. In future, we can figure out more potential and useful sea surface parameters from satellite remote sensing as input attributes so as to further improve the STA sensing accuracy from machine learning. This study can provide a helpful technique for studying thermal variability in the ocean interior which has played an important role in recent global warming and hiatus from satellite observations over global scale.

Improvement on a simplified model for protein folding simulation.

PubMed

Zhang, Ming; Chen, Changjun; He, Yi; Xiao, Yi

2005-11-01

Improvements were made on a simplified protein model--the Ramachandran model-to achieve better computer simulation of protein folding. To check the validity of such improvements, we chose the ultrafast folding protein Engrailed Homeodomain as an example and explored several aspects of its folding. The engrailed homeodomain is a mainly alpha-helical protein of 61 residues from Drosophila melanogaster. We found that the simplified model of Engrailed Homeodomain can fold into a global minimum state with a tertiary structure in good agreement with its native structure.

An operational global-scale ocean thermal analysis system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clancy, R. M.; Pollak, K.D.; Phoebus, P.A.

1990-04-01

The Optimum Thermal Interpolation System (OTIS) is an ocean thermal analysis system designed for operational use at FNOC. It is based on the optimum interpolation of the assimilation technique and functions in an analysis-prediction-analysis data assimilation cycle with the TOPS mixed-layer model. OTIS provides a rigorous framework for combining real-time data, climatology, and predictions from numerical ocean prediction models to produce a large-scale synoptic representation of ocean thermal structure. The techniques and assumptions used in OTIS are documented and results of operational tests of global scale OTIS at FNOC are presented. The tests involved comparisons of OTIS against an existingmore » operational ocean thermal structure model and were conducted during February, March, and April 1988. Qualitative comparison of the two products suggests that OTIS gives a more realistic representation of subsurface anomalies and horizontal gradients and that it also gives a more accurate analysis of the thermal structure, with improvements largest below the mixed layer. 37 refs.« less

Physiologically Based Pharmacokinetic Modeling in Lead Optimization. 1. Evaluation and Adaptation of GastroPlus To Predict Bioavailability of Medchem Series.

PubMed

Daga, Pankaj R; Bolger, Michael B; Haworth, Ian S; Clark, Robert D; Martin, Eric J

2018-03-05

When medicinal chemists need to improve bioavailability (%F) within a chemical series during lead optimization, they synthesize new series members with systematically modified properties mainly by following experience and general rules of thumb. More quantitative models that predict %F of proposed compounds from chemical structure alone have proven elusive. Global empirical %F quantitative structure-property (QSPR) models perform poorly, and projects have too little data to train local %F QSPR models. Mechanistic oral absorption and physiologically based pharmacokinetic (PBPK) models simulate the dissolution, absorption, systemic distribution, and clearance of a drug in preclinical species and humans. Attempts to build global PBPK models based purely on calculated inputs have not achieved the <2-fold average error needed to guide lead optimization. In this work, local GastroPlus PBPK models are instead customized for individual medchem series. The key innovation was building a local QSPR for a numerically fitted effective intrinsic clearance (CL loc ). All inputs are subsequently computed from structure alone, so the models can be applied in advance of synthesis. Training CL loc on the first 15-18 rat %F measurements gave adequate predictions, with clear improvements up to about 30 measurements, and incremental improvements beyond that.

The Global Fund's paradigm of oversight, monitoring, and results in Mozambique.

PubMed

Warren, Ashley; Cordon, Roberto; Told, Michaela; de Savigny, Don; Kickbusch, Ilona; Tanner, Marcel

2017-12-12

The Global Fund is one of the largest actors in global health. In 2015 the Global Fund was credited with disbursing close to 10 % of all development assistance for health. In 2011 it began a reform process in response to internal reviews following allegations of recipients' misuse of funds. Reforms have focused on grant application processes thus far while the core structures and paradigm have remained intact. We report results of discussions with key stakeholders on the Global Fund, its paradigm of oversight, monitoring, and results in Mozambique. We conducted 38 semi-structured in-depth interviews in Maputo, Mozambique and members of the Global Fund Board and Secretariat in Switzerland. In-country stakeholders were representatives from Global Fund country structures (eg. Principle Recipient), the Ministry of Health, health or development attachés bilateral and multilateral agencies, consultants, and the NGO coordinating body. Thematic coding revealed concerns about the combination of weak country oversight with stringent and cumbersome requirements for monitoring and evaluation linked to performance-based financing. Analysis revealed that despite the changes associated with the New Funding Model, respondents in both Maputo and Geneva firmly believe challenges remain in Global Fund's structure and paradigm. The lack of a country office has many negative downstream effects including reliance on in-country partners and ineffective coordination. Due to weak managerial and absorptive capacity, more oversight is required than is afforded by country team visits. In-country partners provide much needed support for Global Fund recipients, but roles, responsibilities, and accountability must be clearly defined for a successful long-term partnership. Furthermore, decision-makers in Geneva recognize in-country coordination as vital to successful implementation, and partners welcome increased Global Fund engagement. To date, there are no institutional requirements for formalized coordination, and the Global Fund has no consistent representation in Mozambique's in-country coordination groups. The Global Fund should adapt grant implementation and monitoring procedures to the specific local realities that would be illuminated by more formalized coordination.

Electromagnetic studies of global geodynamic processes

NASA Astrophysics Data System (ADS)

Tarits, Pascal

1994-03-01

The deep electromagnetic sounding (DES) technique is one of the few geophysical methods, along with seismology, gravity, heat flow, which may be use to probe the structure of the Earth's mantle directly. The interpretation of the DESs may provide electrical conductivity profiles down to the upper part of the lower mantle. The electrical conductivity is extremely sensitive to most of the thermodynamic processes we believe are acting in the Earth's mantle (temperature increases, partial melting, phase transition and to a lesser extent pressure). Therefore, in principle, results from DES along with laboratory measurements could be used to constrain models of these processes. The DES technique is reviewed in the light of recent results obtained in a variety of domains: data acquisition and analysis, global induction modeling and data inversion and interpretation. The mechanisms and the importance of surface distortions of the DES data are reviewed and techniques to model them are discussed. The recent results in terms of the conductivity distribution in the mantle from local and global DES are presented and a tentative synthesis is proposed. The geodynamic interpretations of the deep conductivity structures are reviewed. The existence of mantle lateral heterogeneities in conductivity at all scales and depths for which electromagnetic data are available is now well documented. A comparison with global results from seismology is presented.

Fast Magnetotail Reconnection: Challenge to Global MHD Modeling

NASA Astrophysics Data System (ADS)

Kuznetsova, M. M.; Hesse, M.; Rastaetter, L.; Toth, G.; de Zeeuw, D.; Gombosi, T.

2005-05-01

Representation of fast magnetotail reconnection rates during substorm onset is one of the major challenges to global MHD modeling. Our previous comparative study of collisionless magnetic reconnection in GEM Challenge geometry demonstrated that the reconnection rate is controlled by ion nongyrotropic behavior near the reconnection site and that it can be described in terms of nongyrotropic corrections to the magnetic induction equation. To further test the approach we performed MHD simulations with nongyrotropic corrections of forced reconnection for the Newton Challenge setup. As a next step we employ the global MHD code BATSRUS and test different methods to model fast magnetotail reconnection rates by introducing non-ideal corrections to the induction equation in terms of nongyrotropic corrections, spatially localized resistivity, or current dependent resistivity. The BATSRUS adaptive grid structure allows to perform global simulations with spatial resolution near the reconnection site comparable with spatial resolution of local MHD simulations for the Newton Challenge. We select solar wind conditions which drive the accumulation of magnetic field in the tail lobes and subsequent magnetic reconnection and energy release. Testing the ability of global MHD models to describe magnetotail evolution during substroms is one of the elements of science based validation efforts at the Community Coordinated Modeling Center.

Probing Mantle Heterogeneity Across Spatial Scales

NASA Astrophysics Data System (ADS)

Hariharan, A.; Moulik, P.; Lekic, V.

2017-12-01

Inferences of mantle heterogeneity in terms of temperature, composition, grain size, melt and crystal structure may vary across local, regional and global scales. Probing these scale-dependent effects require quantitative comparisons and reconciliation of tomographic models that vary in their regional scope, parameterization, regularization and observational constraints. While a range of techniques like radial correlation functions and spherical harmonic analyses have revealed global features like the dominance of long-wavelength variations in mantle heterogeneity, they have limited applicability for specific regions of interest like subduction zones and continental cratons. Moreover, issues like discrepant 1-D reference Earth models and related baseline corrections have impeded the reconciliation of heterogeneity between various regional and global models. We implement a new wavelet-based approach that allows for structure to be filtered simultaneously in both the spectral and spatial domain, allowing us to characterize heterogeneity on a range of scales and in different geographical regions. Our algorithm extends a recent method that expanded lateral variations into the wavelet domain constructed on a cubed sphere. The isolation of reference velocities in the wavelet scaling function facilitates comparisons between models constructed with arbitrary 1-D reference Earth models. The wavelet transformation allows us to quantify the scale-dependent consistency between tomographic models in a region of interest and investigate the fits to data afforded by heterogeneity at various dominant wavelengths. We find substantial and spatially varying differences in the spectrum of heterogeneity between two representative global Vp models constructed using different data and methodologies. Applying the orthonormality of the wavelet expansion, we isolate detailed variations in velocity from models and evaluate additional fits to data afforded by adding such complexities to long-wavelength variations. Our method provides a way to probe and evaluate localized features in a multi-scale description of mantle heterogeneity.

Wave Propagation in Non-Stationary Statistical Mantle Models at the Global Scale

NASA Astrophysics Data System (ADS)

Meschede, M.; Romanowicz, B. A.

2014-12-01

We study the effect of statistically distributed heterogeneities that are smaller than the resolution of current tomographic models on seismic waves that propagate through the Earth's mantle at teleseismic distances. Current global tomographic models are missing small-scale structure as evidenced by the failure of even accurate numerical synthetics to explain enhanced coda in observed body and surface waveforms. One way to characterize small scale heterogeneity is to construct random models and confront observed coda waveforms with predictions from these models. Statistical studies of the coda typically rely on models with simplified isotropic and stationary correlation functions in Cartesian geometries. We show how to construct more complex random models for the mantle that can account for arbitrary non-stationary and anisotropic correlation functions as well as for complex geometries. Although this method is computationally heavy, model characteristics such as translational, cylindrical or spherical symmetries can be used to greatly reduce the complexity such that this method becomes practical. With this approach, we can create 3D models of the full spherical Earth that can be radially anisotropic, i.e. with different horizontal and radial correlation functions, and radially non-stationary, i.e. with radially varying model power and correlation functions. Both of these features are crucial for a statistical description of the mantle in which structure depends to first order on the spherical geometry of the Earth. We combine different random model realizations of S velocity with current global tomographic models that are robust at long wavelengths (e.g. Meschede and Romanowicz, 2014, GJI submitted), and compute the effects of these hybrid models on the wavefield with a spectral element code (SPECFEM3D_GLOBE). We finally analyze the resulting coda waves for our model selection and compare our computations with observations. Based on these observations, we make predictions about the strength of unresolved small-scale structure and extrinsic attenuation.

Adaptively Parameterized Tomography of the Western Hellenic Subduction Zone

NASA Astrophysics Data System (ADS)

Hansen, S. E.; Papadopoulos, G. A.

2017-12-01

The Hellenic subduction zone (HSZ) is the most seismically active region in Europe and plays a major role in the active tectonics of the eastern Mediterranean. This complicated environment has the potential to generate both large magnitude (M > 8) earthquakes and tsunamis. Situated above the western end of the HSZ, Greece faces a high risk from these geologic hazards, and characterizing this risk requires detailed understanding of the geodynamic processes occurring in this area. However, despite previous investigations, the kinematics of the HSZ are still controversial. Regional tomographic studies have yielded important information about the shallow seismic structure of the HSZ, but these models only image down to 150 km depth within small geographic areas. Deeper structure is constrained by global tomographic models but with coarser resolution ( 200-300 km). Additionally, current tomographic models focused on the HSZ were generated with regularly-spaced gridding, and this type of parameterization often over-emphasizes poorly sampled regions of the model or under-represents small-scale structure. Therefore, we are developing a new, high-resolution image of the mantle structure beneath the western HSZ using an adaptively parameterized seismic tomography approach. By combining multiple, regional travel-time datasets in the context of a global model, with adaptable gridding based on the sampling density of high-frequency data, this method generates a composite model of mantle structure that is being used to better characterize geodynamic processes within the HSZ, thereby allowing for improved hazard assessment. Preliminary results will be shown.

The synergistic use of models and observations: understanding the mechanisms behind observed biomass dynamics at 14 Amazonian field sites and the implications for future biomass change

NASA Astrophysics Data System (ADS)

Levine, N. M.; Galbraith, D.; Christoffersen, B. J.; Imbuzeiro, H. A.; Restrepo-Coupe, N.; Malhi, Y.; Saleska, S. R.; Costa, M. H.; Phillips, O.; Andrade, A.; Moorcroft, P. R.

2011-12-01

The Amazonian rainforests play a vital role in global water, energy and carbon cycling. The sensitivity of this system to natural and anthropogenic disturbances therefore has important implications for the global climate. Some global models have predicted large-scale forest dieback and the savannization of Amazonia over the next century [Meehl et al., 2007]. While several studies have demonstrated the sensitivity of dynamic global vegetation models to changes in temperature, precipitation, and dry season length [e.g. Galbraith et al., 2010; Good et al., 2011], the ability of these models to accurately reproduce ecosystem dynamics of present-day transitional or low biomass tropical forests has not been demonstrated. A model-data intercomparison was conducted with four state-of-the-art terrestrial ecosystem models to evaluate the ability of these models to accurately represent structure, function, and long-term biomass dynamics over a range of Amazonian ecosystems. Each modeling group conducted a series of simulations for 14 sites including mature forest, transitional forest, savannah, and agricultural/pasture sites. All models were run using standard physical parameters and the same initialization procedure. Model results were compared against forest inventory and dendrometer data in addition to flux tower measurements. While the models compared well against field observations for the mature forest sites, significant differences were observed between predicted and measured ecosystem structure and dynamics for the transitional forest and savannah sites. The length of the dry season and soil sand content were good predictors of model performance. In addition, for the big leaf models, model performance was highest for sites dominated by late successional trees and lowest for sites with predominantly early and mid-successional trees. This study provides insight into tropical forest function and sensitivity to environmental conditions that will aid in predictions of the response of the Amazonian rainforest to future anthropogenically induced changes.

Photoelectrons in the Quiet Polar Wind

NASA Technical Reports Server (NTRS)

Glocer, A.; Khazanov, G.; Liemohn, M.

2017-01-01

This study presents a newly coupled model capable of treating the superthermal electron population in the global polar wind solution. The model combines the hydrodynamic Polar Wind Outflow Model (PWOM) with the kinetic SuperThermal Electron Transport (STET) code. The resulting PWOM-STET coupled model is described and then used to investigate the role of photoelectrons in the polar wind. We present polar wind results along single stationary field lines under dayside and nightside conditions, as well as the global solution reconstructed from nearly 1000 moving field lines. The model results show significant day-night asymmetries in the polar wind solution owing to the higher ionization and photoelectron fluxes on the dayside compared to the nightside. Field line motion is found to modify this dependence and create global structure by transporting field lines through different conditions of illumination and through the localized effects of Joule heating.

Low and High Frequency Models of Response Statistics of a Cylindrical Orthogrid Vehicle Panel to Acoustic Excitation

NASA Technical Reports Server (NTRS)

Smith, Andrew; LaVerde, Bruce; Teague, David; Gardner, Bryce; Cotoni, Vincent

2010-01-01

This presentation further develops the orthogrid vehicle panel work. Employed Hybrid Module capabilities to assess both low/mid frequency and high frequency models in the VA One simulation environment. The response estimates from three modeling approaches are compared to ground test measurements. Detailed Finite Element Model of the Test Article -Expect to capture both the global panel modes and the local pocket mode response, but at a considerable analysis expense (time & resources). A Composite Layered Construction equivalent global stiffness approximation using SEA -Expect to capture response of the global panel modes only. An SEA approximation using the Periodic Subsystem Formulation. A finite element model of a single periodic cell is used to derive the vibroacoustic properties of the entire periodic structure (modal density, radiation efficiency, etc. Expect to capture response at various locations on the panel (on the skin and on the ribs) with less analysis expense

From intuition to statistics in building subsurface structural models

USGS Publications Warehouse

Brandenburg, J.P.; Alpak, F.O.; Naruk, S.; Solum, J.

2011-01-01

Experts associated with the oil and gas exploration industry suggest that combining forward trishear models with stochastic global optimization algorithms allows a quantitative assessment of the uncertainty associated with a given structural model. The methodology is applied to incompletely imaged structures related to deepwater hydrocarbon reservoirs and results are compared to prior manual palinspastic restorations and borehole data. This methodology is also useful for extending structural interpretations into other areas of limited resolution, such as subsalt in addition to extrapolating existing data into seismic data gaps. This technique can be used for rapid reservoir appraisal and potentially have other applications for seismic processing, well planning, and borehole stability analysis.

Earthquake casualty models within the USGS Prompt Assessment of Global Earthquakes for Response (PAGER) system

USGS Publications Warehouse

Jaiswal, Kishor; Wald, David J.; Earle, Paul S.; Porter, Keith A.; Hearne, Mike

2011-01-01

Since the launch of the USGS’s Prompt Assessment of Global Earthquakes for Response (PAGER) system in fall of 2007, the time needed for the U.S. Geological Survey (USGS) to determine and comprehend the scope of any major earthquake disaster anywhere in the world has been dramatically reduced to less than 30 min. PAGER alerts consist of estimated shaking hazard from the ShakeMap system, estimates of population exposure at various shaking intensities, and a list of the most severely shaken cities in the epicentral area. These estimates help government, scientific, and relief agencies to guide their responses in the immediate aftermath of a significant earthquake. To account for wide variability and uncertainty associated with inventory, structural vulnerability and casualty data, PAGER employs three different global earthquake fatality/loss computation models. This article describes the development of the models and demonstrates the loss estimation capability for earthquakes that have occurred since 2007. The empirical model relies on country-specific earthquake loss data from past earthquakes and makes use of calibrated casualty rates for future prediction. The semi-empirical and analytical models are engineering-based and rely on complex datasets including building inventories, time-dependent population distributions within different occupancies, the vulnerability of regional building stocks, and casualty rates given structural collapse.

Multilevel Deficiency of White Matter Connectivity Networks in Alzheimer's Disease: A Diffusion MRI Study with DTI and HARDI Models.

PubMed

Wang, Tao; Shi, Feng; Jin, Yan; Yap, Pew-Thian; Wee, Chong-Yaw; Zhang, Jianye; Yang, Cece; Li, Xia; Xiao, Shifu; Shen, Dinggang

2016-01-01

Alzheimer's disease (AD) is the most common form of dementia in elderly people. It is an irreversible and progressive brain disease. In this paper, we utilized diffusion-weighted imaging (DWI) to detect abnormal topological organization of white matter (WM) structural networks. We compared the differences between WM connectivity characteristics at global, regional, and local levels in 26 patients with probable AD and 16 normal control (NC) elderly subjects, using connectivity networks constructed with the diffusion tensor imaging (DTI) model and the high angular resolution diffusion imaging (HARDI) model, respectively. At the global level, we found that the WM structural networks of both AD and NC groups had a small-world topology; however, the AD group showed a significant decrease in both global and local efficiency, but an increase in clustering coefficient and the average shortest path length. We further found that the AD patients had significantly decreased nodal efficiency at the regional level, as well as weaker connections in multiple local cortical and subcortical regions, such as precuneus, temporal lobe, hippocampus, and thalamus. The HARDI model was found to be more advantageous than the DTI model, as it was more sensitive to the deficiencies in AD at all of the three levels.

A New Global Model Of Plates Motion Over The Mantle For The Last 300MA: Link Between Mantle Structures, Volcanism and Plate Tectonics.

NASA Astrophysics Data System (ADS)

Jean, B.; Sophie, V. D. G.; Greff-Lefftz, M.; Frizon de Lamotte, D.; Lescanne, M.; Leparmentier, F.

2017-12-01

We compare several models of hot spot reference frames published in the litterature retracing the kinematics of the lithosphere over the mantle for the last 120Ma. We then propose a new model between 130 and 300Ma, based on the comparison of various surface indicators (geological, thermal data from boreholes and compilation of global surface volcanism), a reassessment of hot spots classification and paleomagnetic data. We discuss the implication of our model on the location and timing of several types of surface volcanism (subductions, intracontinental volcanism, rifting and LIPS, kimberlites) that we link to deep structures interpreted from tomographic images. A clear degree two permanent organization of mantle convection during this period of time is obvious, and the subduction rate appears to be episodic. We finally deduce from our model mantle TPW (True Polar Wander), the shifting of the entire mantle relative to the earth's spin axis over the last 300 million years. The inferred global motion of the mantle deduced occurs around a Euler pole which axis is close to the earth equator but varies significantly in longitude with respect to time showing complex tridimensional mass reorganizations in the mantle, probably linked to both LLSVPs and slabs effect.

The vibro-acoustic response and analysis of a full-scale aircraft fuselage section for interior noise reduction.

PubMed

Herdic, Peter C; Houston, Brian H; Marcus, Martin H; Williams, Earl G; Baz, Amr M

2005-06-01

The surface and interior response of a Cessna Citation fuselage section under three different forcing functions (10-1000 Hz) is evaluated through spatially dense scanning measurements. Spatial Fourier analysis reveals that a point force applied to the stiffener grid provides a rich wavenumber response over a broad frequency range. The surface motion data show global structural modes (approximately < 150 Hz), superposition of global and local intrapanel responses (approximately 150-450 Hz), and intrapanel motion alone (approximately > 450 Hz). Some evidence of Bloch wave motion is observed, revealing classical stop/pass bands associated with stiffener periodicity. The interior response (approximately < 150 Hz) is dominated by global structural modes that force the interior cavity. Local intrapanel responses (approximately > 150 Hz) of the fuselage provide a broadband volume velocity source that strongly excites a high density of interior modes. Mode coupling between the structural response and the interior modes appears to be negligible due to a lack of frequency proximity and mismatches in the spatial distribution. A high degree-of-freedom finite element model of the fuselage section was developed as a predictive tool. The calculated response is in good agreement with the experimental result, yielding a general model development methodology for accurate prediction of structures with moderate to high complexity.

The comparison of performance by using alternative refrigerant R152a in automobile climate system with different artificial neural network models

NASA Astrophysics Data System (ADS)

Kalkisim, A. T.; Hasiloglu, A. S.; Bilen, K.

2016-04-01

Due to the refrigerant gas R134a which is used in automobile air conditioning systems and has greater global warming impact will be phased out gradually, an alternative gas is being desired to be used without much change on existing air conditioning systems. It is aimed to obtain the easier solution for intermediate values on the performance by creating a Neural Network Model in case of using a fluid (R152a) in automobile air conditioning systems that has the thermodynamic properties close to each other and near-zero global warming impact. In this instance, a network structure giving the most accurate result has been established by identifying which model provides the best education with which network structure and makes the most accurate predictions in the light of the data obtained after five different ANN models was trained with three different network structures. During training of Artificial Neural Network, Quick Propagation, Quasi-Newton, Levenberg-Marquardt and Conjugate Gradient Descent Batch Back Propagation methodsincluding five inputs and one output were trained with various network structures. Over 1500 iterations have been evaluated and the most appropriate model was identified by determining minimum error rates. The accuracy of the determined ANN model was revealed by comparing with estimates made by the Multi-Regression method.

Simulated GOLD Observations of Atmospheric Waves

NASA Astrophysics Data System (ADS)

Correira, J.; Evans, J. S.; Lumpe, J. D.; Rusch, D. W.; Chandran, A.; Eastes, R.; Codrescu, M.

2016-12-01

The Global-scale Observations of the Limb and Disk (GOLD) mission will measure structures in the Earth's airglow layer due to dynamical forcing by vertically and horizontally propagating waves. These measurements focus on global-scale structures, including compositional and temperature responses resulting from dynamical forcing. Daytime observations of far-UV emissions by GOLD will be used to generate two-dimensional maps of the ratio of atomic oxygen and molecular nitrogen column densities (ΣO/N2 ) as well as neutral temperature that provide signatures of large-scale spatial structure. In this presentation, we use simulations to demonstrate GOLD's capability to deduce periodicities and spatial dimensions of large-scale waves from the spatial and temporal evolution observed in composition and temperature maps. Our simulations include sophisticated forward modeling of the upper atmospheric airglow that properly accounts for anisotropy in neutral and ion composition, temperature, and solar illumination. Neutral densities and temperatures used in the simulations are obtained from global circulation and climatology models that have been perturbed by propagating waves with a range of amplitudes, periods, and sources of excitation. Modeling of airglow emission and predictions of ΣO/N2 and neutral temperatures are performed with the Atmospheric Ultraviolet Radiance Integrated Code (AURIC) and associated derived product algorithms. Predicted structure in ΣO/N2 and neutral temperature due to dynamical forcing by propagating waves is compared to existing observations. Realistic GOLD Level 2 data products are generated from simulated airglow emission using algorithm code that will be implemented operationally at the GOLD Science Data Center.

AxiSEM3D: broadband seismic wavefields in 3-D aspherical Earth models

NASA Astrophysics Data System (ADS)

Leng, K.; Nissen-Meyer, T.; Zad, K. H.; van Driel, M.; Al-Attar, D.

2017-12-01

Seismology is the primary tool for data-informed inference of Earth structure and dynamics. Simulating seismic wave propagation at a global scale is fundamental to seismology, but remains as one of most challenging problems in scientific computing, because of both the multiscale nature of Earth's interior and the observable frequency band of seismic data. We present a novel numerical method to simulate global seismic wave propagation in realistic 3-D Earth models. Our method, named AxiSEM3D, is a hybrid of spectral element method and pseudospectral method. It reduces the azimuthal dimension of wavefields by means of a global Fourier series parameterization, of which the number of terms can be locally adapted to the inherent azimuthal smoothness of the wavefields. AxiSEM3D allows not only for material heterogeneities, such as velocity, density, anisotropy and attenuation, but also for finite undulations on radial discontinuities, both solid-solid and solid-fluid, and thereby a variety of aspherical Earth features such as ellipticity, topography, variable crustal thickness, and core-mantle boundary topography. Such interface undulations are equivalently interpreted as material perturbations of the contiguous media, based on the "particle relabelling transformation". Efficiency comparisons show that AxiSEM3D can be 1 to 3 orders of magnitude faster than conventional 3-D methods, with the speedup increasing with simulation frequency and decreasing with model complexity, but for all realistic structures the speedup remains at least one order of magnitude. The observable frequency range of global seismic data (up to 1 Hz) has been covered for wavefield modelling upon a 3-D Earth model with reasonable computing resources. We show an application of surface wave modelling within a state-of-the-art global crustal model (Crust1.0), with the synthetics compared to real data. The high-performance C++ code is released at github.com/AxiSEM3D/AxiSEM3D.

Global Warming and the Neglected Greenhouse Gas: A Cross-National Study of the Social Causes of Methane Emissions Intensity, 1995

ERIC Educational Resources Information Center

Jorgenson, Andrew

2006-01-01

The human dimensions of greenhouse gas emissions and global warming attract considerable attention in macrosociology. However, cross-national analyses generally neglect greenhouse gases other than carbon dioxide. The current study addresses this paucity through the testing of theoretically derived models for the social structural causes of the…

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

PubMed

Ding, Jiarui; Condon, Anne; Shah, Sohrab P

2018-05-21

Single-cell RNA-sequencing has great potential to discover cell types, identify cell states, trace development lineages, and reconstruct the spatial organization of cells. However, dimension reduction to interpret structure in single-cell sequencing data remains a challenge. Existing algorithms are either not able to uncover the clustering structures in the data or lose global information such as groups of clusters that are close to each other. We present a robust statistical model, scvis, to capture and visualize the low-dimensional structures in single-cell gene expression data. Simulation results demonstrate that low-dimensional representations learned by scvis preserve both the local and global neighbor structures in the data. In addition, scvis is robust to the number of data points and learns a probabilistic parametric mapping function to add new data points to an existing embedding. We then use scvis to analyze four single-cell RNA-sequencing datasets, exemplifying interpretable two-dimensional representations of the high-dimensional single-cell RNA-sequencing data.

Fibrillation mechanism of a model intrinsically disordered protein revealed by 2D correlation deep UV resonance Raman spectroscopy.

PubMed

Sikirzhytski, Vitali; Topilina, Natalya I; Takor, Gaius A; Higashiya, Seiichiro; Welch, John T; Uversky, Vladimir N; Lednev, Igor K

2012-05-14

Understanding of numerous biological functions of intrinsically disordered proteins (IDPs) is of significant interest to modern life science research. A large variety of serious debilitating diseases are associated with the malfunction of IDPs including neurodegenerative disorders and systemic amyloidosis. Here we report on the molecular mechanism of amyloid fibrillation of a model IDP (YE8) using 2D correlation deep UV resonance Raman spectroscopy. YE8 is a genetically engineered polypeptide, which is completely unordered at neutral pH yet exhibits all properties of a fibrillogenic protein at low pH. The very first step of the fibrillation process involves structural rearrangements of YE8 at the global structure level without the detectable appearance of secondary structural elements. The formation of β-sheet species follows the global structural changes and proceeds via the simultaneous formation of turns and β-strands. The kinetic mechanism revealed is an important new contribution to understanding of the general fibrillation mechanism proposed for IDP.

Protein structure modeling and refinement by global optimization in CASP12.

PubMed

Hong, Seung Hwan; Joung, InSuk; Flores-Canales, Jose C; Manavalan, Balachandran; Cheng, Qianyi; Heo, Seungryong; Kim, Jong Yun; Lee, Sun Young; Nam, Mikyung; Joo, Keehyoung; Lee, In-Ho; Lee, Sung Jong; Lee, Jooyoung

2018-03-01

For protein structure modeling in the CASP12 experiment, we have developed a new protocol based on our previous CASP11 approach. The global optimization method of conformational space annealing (CSA) was applied to 3 stages of modeling: multiple sequence-structure alignment, three-dimensional (3D) chain building, and side-chain re-modeling. For better template selection and model selection, we updated our model quality assessment (QA) method with the newly developed SVMQA (support vector machine for quality assessment). For 3D chain building, we updated our energy function by including restraints generated from predicted residue-residue contacts. New energy terms for the predicted secondary structure and predicted solvent accessible surface area were also introduced. For difficult targets, we proposed a new method, LEEab, where the template term played a less significant role than it did in LEE, complemented by increased contributions from other terms such as the predicted contact term. For TBM (template-based modeling) targets, LEE performed better than LEEab, but for FM targets, LEEab was better. For model refinement, we modified our CASP11 molecular dynamics (MD) based protocol by using explicit solvents and tuning down restraint weights. Refinement results from MD simulations that used a new augmented statistical energy term in the force field were quite promising. Finally, when using inaccurate information (such as the predicted contacts), it was important to use the Lorentzian function for which the maximal penalty arising from wrong information is always bounded. © 2017 Wiley Periodicals, Inc.

MetaMQAP: a meta-server for the quality assessment of protein models.

PubMed

Pawlowski, Marcin; Gajda, Michal J; Matlak, Ryszard; Bujnicki, Janusz M

2008-09-29

Computational models of protein structure are usually inaccurate and exhibit significant deviations from the true structure. The utility of models depends on the degree of these deviations. A number of predictive methods have been developed to discriminate between the globally incorrect and approximately correct models. However, only a few methods predict correctness of different parts of computational models. Several Model Quality Assessment Programs (MQAPs) have been developed to detect local inaccuracies in unrefined crystallographic models, but it is not known if they are useful for computational models, which usually exhibit different and much more severe errors. The ability to identify local errors in models was tested for eight MQAPs: VERIFY3D, PROSA, BALA, ANOLEA, PROVE, TUNE, REFINER, PROQRES on 8251 models from the CASP-5 and CASP-6 experiments, by calculating the Spearman's rank correlation coefficients between per-residue scores of these methods and local deviations between C-alpha atoms in the models vs. experimental structures. As a reference, we calculated the value of correlation between the local deviations and trivial features that can be calculated for each residue directly from the models, i.e. solvent accessibility, depth in the structure, and the number of local and non-local neighbours. We found that absolute correlations of scores returned by the MQAPs and local deviations were poor for all methods. In addition, scores of PROQRES and several other MQAPs strongly correlate with 'trivial' features. Therefore, we developed MetaMQAP, a meta-predictor based on a multivariate regression model, which uses scores of the above-mentioned methods, but in which trivial parameters are controlled. MetaMQAP predicts the absolute deviation (in Angströms) of individual C-alpha atoms between the model and the unknown true structure as well as global deviations (expressed as root mean square deviation and GDT_TS scores). Local model accuracy predicted by MetaMQAP shows an impressive correlation coefficient of 0.7 with true deviations from native structures, a significant improvement over all constituent primary MQAP scores. The global MetaMQAP score is correlated with model GDT_TS on the level of 0.89. Finally, we compared our method with the MQAPs that scored best in the 7th edition of CASP, using CASP7 server models (not included in the MetaMQAP training set) as the test data. In our benchmark, MetaMQAP is outperformed only by PCONS6 and method QA_556 - methods that require comparison of multiple alternative models and score each of them depending on its similarity to other models. MetaMQAP is however the best among methods capable of evaluating just single models. We implemented the MetaMQAP as a web server available for free use by all academic users at the URL https://genesilico.pl/toolkit/

LITHO1.0: An Updated Crust and Lithosphere Model of the Earth

NASA Astrophysics Data System (ADS)

Masters, G.; Ma, Z.; Laske, G.; Pasyanos, M. E.

2011-12-01

We are developing LITHO1.0: an updated crust and lithosphere model of the Earth. The overall plan is to take the popular CRUST2.0 model - a global model of crustal structure with a relatively poor representation of the uppermost mantle - and improve its nominal resolution to 1 degree and extend the model to include lithospheric structure. The new model, LITHO1.0, will be constrained by many different datasets including extremely large new datasets of relatively short period group velocity data. Other data sets include (but are not limited to) compilations of receiver function constraints and active source studies. To date, we have completed the compilation of extremely large global datasets of group velocity for Rayleigh and Love waves from 10mHz to 40mHz using a cluster analysis technique. We have also extended the method to measure phase velocity and are complementing the group velocity with global data sets of longer period phase data that help to constrain deep lithosphere properties. To model these data, we require a starting model for the crust at a nominal resolution of 1 degree. This has been developed by constructing a map of crustal thickness using data from receiver function and active source experiments where available, and by using CRUST2.0 where other constraints are not available. Particular care has been taken to make sure that the locations of sharp changes in crustal thickness are accurately represented. This map is then used as a template to extend CRUST2.0 to 1 degree nominal resolution and to develop starting maps of all crustal properties. We are currently modeling the data using two techniques. The first is a linearized inversion about the 3D crustal starting model. Note that it is important to use local eigenfunctions to compute Frechet derivatives due to the extreme variations in crustal structure. Another technique uses a targeted grid search method. A preliminary model for the crustal part of the model will be presented.

Estimating multi-period global cost efficiency and productivity change of systems with network structures

NASA Astrophysics Data System (ADS)

Tohidnia, S.; Tohidi, G.

2018-02-01

The current paper develops three different ways to measure the multi-period global cost efficiency for homogeneous networks of processes when the prices of exogenous inputs are known at all time periods. A multi-period network data envelopment analysis model is presented to measure the minimum cost of the network system based on the global production possibility set. We show that there is a relationship between the multi-period global cost efficiency of network system and its subsystems, and also its processes. The proposed model is applied to compute the global cost Malmquist productivity index for measuring the productivity changes of network system and each of its process between two time periods. This index is circular. Furthermore, we show that the productivity changes of network system can be defined as a weighted average of the process productivity changes. Finally, a numerical example will be presented to illustrate the proposed approach.

The Interaction of Global Biochemical Cycles

NASA Technical Reports Server (NTRS)

Moore, B., III; Dastoor, M. N.

1984-01-01

The global biosphere in an exceedingly complex system. To gain an understanding of its structure and dynamic features, it is necessary not only to increase the knowledge about the detailed processes but also to develop models of how global interactions take place. Attempts to analyze the detailed physical, chemical and biological processes in this context need to be guided by an advancement of understanding of the latter. It is necessary to develop a strategy of data gathering that severs both these purposes simultaneously. The following papers deal with critical aspects in the global cycles of carbon, nitrogen, phosphorus and sulfur in details as well as the cycle of water and the flow of energy in the Earth's environment. The objective is to set partly the foundation for the development of mathematical models that allow exploration of the coupled dynamics of the global cycles of carbon, nitrogen, phosphorus, sulfur, as well as energy and water flux.

Graduate Global Public Health Education: Activities and Outcomes in Relation to Student Prior Experience

PubMed Central

Jackson, Suzanne F.; Cole, Donald C.

2013-01-01

The Dalla Lana School of Public Health uses an “add-on” or concentration model of global health education. Records of masters’ graduate cohorts across five disciplinary fields from 2006 to 2009 were classified as to prior experience at application and completion of global health concentration requirements. Alumni from the first two cohorts (2006-08 and 2007-09) were interviewed using a semi-structured interview guide. Prior experience was not linked consistently with the number of elective courses, location of practica or completion of requirements. Successful completion of the global health requirements depended more on the student’s base disciplinary program. Interviewed alumni with medium prior experience reported greater satisfaction with the concentration. Alumni with lower prior experience wanted more courses and support with practica. The pros and cons of a concentration model of global public health graduate education are discussed. PMID:23618475

How transfer flights shape the structure of the airline network.

PubMed

Ryczkowski, Tomasz; Fronczak, Agata; Fronczak, Piotr

2017-07-17

In this paper, we analyse the gravity model in the global passenger air-transport network. We show that in the standard form, the model is inadequate for correctly describing the relationship between passenger flows and typical geo-economic variables that characterize connected countries. We propose a model for transfer flights that allows exploitation of these discrepancies in order to discover hidden subflows in the network. We illustrate its usefulness by retrieving the distance coefficient in the gravity model, which is one of the determinants of the globalization process. Finally, we discuss the correctness of the presented approach by comparing the distance coefficient to several well-known economic events.

Structural salience and the nonaccidentality of a Gestalt.

PubMed

Strother, Lars; Kubovy, Michael

2012-08-01

We perceive structure through a process of perceptual organization. Here we report a new perceptual organization phenomenon-the facilitation of visual grouping by global curvature. Observers viewed patterns that they perceived as organized into collections of curves. The patterns were perceptually ambiguous such that the perceived orientation of the patterns varied from trial to trial. When patterns were sufficiently dense and proximity was equated for the predominant perceptual alternatives, observers tended to perceive the organization with the greatest curvature. This effect is tantamount to visual grouping by maximal curvature and thus demonstrates an unprecedented effect of global structure on perceptual organization. We account for this result with a model that predicts the perceived organization of a pattern as function of its nonaccidentality, which we define as the probability that it could have occurred by chance. Our findings demonstrate a novel relationship between the geometry of a pattern and the visual salience of global structure. (c) 2012 APA, all rights reserved.

Global isostatic geoid anomalies for plate and boundary layer models of the lithosphere

NASA Technical Reports Server (NTRS)

Hager, B. H.

1981-01-01

Commonly used one dimensional geoid models predict that the isostatic geoid anomaly over old ocean basins for the boundary layer thermal model of the lithosphere is a factor of two greater than that for the plate model. Calculations presented, using the spherical analogues of the plate and boundary layer thermal models, show that for the actual global distribution of plate ages, one dimensional models are not accurate and a spherical, fully three dimensional treatment is necessary. The maximum difference in geoid heights predicted for the two models is only about two meters. The thermal structure of old lithosphere is unlikely to be resolvable using global geoid anomalies. Stripping the effects of plate aging and a hypothetical uniform, 35 km, isostatically-compensated continental crust from the observed geoid emphasizes that the largest-amplitude geoid anomaly is the geoid low of almost 120 m over West Antarctica, a factor of two greater than the low of 60 m over Ceylon.

Research and development activities in unified control-structure modeling and design

NASA Technical Reports Server (NTRS)

Nayak, A. P.

1985-01-01

Results of work sponsored by JPL and other organizations to develop a unified control/structures modeling and design capability for large space structures is presented. Recent analytical results are presented to demonstrate the significant interdependence between structural and control properties. A new design methodology is suggested in which the structure, material properties, dynamic model and control design are all optimized simultaneously. The development of a methodology for global design optimization is recommended as a long term goal. It is suggested that this methodology should be incorporated into computer aided engineering programs, which eventually will be supplemented by an expert system to aid design optimization. Recommendations are also presented for near term research activities at JPL. The key recommendation is to continue the development of integrated dynamic modeling/control design techniques, with special attention given to the development of structural models specially tailored to support design.

The structural relationships between organizational commitment, global job satisfaction, developmental experiences, work values, organizational support, and person-organization fit among nursing faculty.

PubMed

Gutierrez, Antonio P; Candela, Lori L; Carver, Lara

2012-07-01

GUTIERAIM: The aim of this correlational study was to examine the relations between organizational commitment, perceived organizational support, work values, person-organization fit, developmental experiences, and global job satisfaction among nursing faculty. The global nursing shortage is well documented. At least 57 countries have reported critical shortages. The lack of faculty is finally being recognized as a major issue directly influencing the ability to admit and graduate adequate numbers of nurses. As efforts increase to both recruit and retain faculty, the concept of organizational commitment and what it means to them is important to consider. A cross-sectional correlational design was used. The present study investigated the underlying structure of various organizational factors using structural equation modelling. Data were collected from a stratified random sample of nurse faculty during the academic year 2006-2007. The final model demonstrated that perceived organizational support, developmental experiences, person-organization fit, and global job satisfaction positively predicted nurse faculty's organizational commitment to the academic organization. Cross-validation results indicated that the final full SEM is valid and reliable. Nursing faculty administrators able to use mentoring skills are well equipped to build positive relationships with nursing faculty, which in turn, can lead to increased organizational commitment, productivity, job satisfaction, and perceived organizational support, among others. © 2012 Blackwell Publishing Ltd.

Understanding Transient Forcing with Plasma Instability Model, Ionospheric Propagation Model and GNSS Observations

NASA Astrophysics Data System (ADS)

Deshpande, K.; Zettergren, M. D.; Datta-Barua, S.

2017-12-01

Fluctuations in the Global Navigation Satellite Systems (GNSS) signals observed as amplitude and phase scintillations are produced by plasma density structures in the ionosphere. Phase scintillation events in particular occur due to structures at Fresnel scales, typically about 250 meters at ionospheric heights and GNSS frequency. Likely processes contributing to small-scale density structuring in auroral and polar regions include ionospheric gradient-drift instability (GDI) and Kelvin-Helmholtz instability (KHI), which result, generally, from magnetosphere-ionosphere interactions (e.g. reconnection) associated with cusp and auroral zone regions. Scintillation signals, ostensibly from either GDI or KHI, are frequently observed in the high latitude ionosphere and are potentially useful diagnostics of how energy from the transient forcing in the cusp or polar cap region cascades, via instabilities, to small scales. However, extracting quantitative details of instabilities leading to scintillation using GNSS data drastically benefits from both a model of the irregularities and a model of GNSS signal propagation through irregular media. This work uses a physics-based model of the generation of plasma density irregularities (GEMINI - Geospace Environment Model of Ion-Neutral Interactions) coupled to an ionospheric radio wave propagation model (SIGMA - Satellite-beacon Ionospheric-scintillation Global Model of the upper Atmosphere) to explore the cascade of density structures from medium to small (sub-kilometer) scales. Specifically, GEMINI-SIGMA is used to simulate expected scintillation from different instabilities during various stages of evolution to determine features of the scintillation that may be useful to studying ionospheric density structures. Furthermore we relate the instabilities producing GNSS scintillations to the transient space and time-dependent magnetospheric phenomena and further predict characteristics of scintillation in different geophysical situations. Finally we present initial comparison of our modeling results with GNSS scintillation observed via an array of receivers at Poker Flat.

The Earth's Population Can Reach 14 Billion in the 23rd Century without Significant Adverse Effects on Survivability.

PubMed

Krapivin, Vladimir F; Varotsos, Costas A; Soldatov, Vladimir Yu

2017-08-07

This paper presents the results obtained from the study of the sustainable state between nature and human society on a global scale, focusing on the most critical interactions between the natural and anthropogenic processes. Apart from the conventional global models, the basic tool employed herein is the newly proposed complex model entitled "nature-society system (NSS) model", through which a reliable modeling of the processes taking place in the global climate-nature-society system (CNSS) is achieved. This universal tool is mainly based on the information technology that allows the adaptive conformance of the parametric and functional space of this model. The structure of this model includes the global biogeochemical cycles, the hydrological cycle, the demographic processes and a simple climate model. In this model, the survivability indicator is used as a criterion for the survival of humanity, which defines a trend in the dynamics of the total biomass of the biosphere, taking into account the trends of the biocomplexity dynamics of the land and hydrosphere ecosystems. It should be stressed that there are no other complex global models comparable to those of the CNSS model developed here. The potential of this global model is demonstrated through specific examples in which the classification of the terrestrial ecosystem is accomplished by separating 30 soil-plant formations for geographic pixels 4° × 5°. In addition, humanity is considered to be represented by three groups of economic development status (high, transition, developing) and the World Ocean is parameterized by three latitude zones (low, middle, high). The modelling results obtained show the dynamics of the CNSS at the beginning of the 23rd century, according to which the world population can reach the level of 14 billion without the occurrence of major negative impacts.

Local communities obstruct global consensus: Naming game on multi-local-world networks

NASA Astrophysics Data System (ADS)

Lou, Yang; Chen, Guanrong; Fan, Zhengping; Xiang, Luna

2018-02-01

Community structure is essential for social communications, where individuals belonging to the same community are much more actively interacting and communicating with each other than those in different communities within the human society. Naming game, on the other hand, is a social communication model that simulates the process of learning a name of an object within a community of humans, where the individuals can generally reach global consensus asymptotically through iterative pair-wise conversations. The underlying network indicates the relationships among the individuals. In this paper, three typical topologies, namely random-graph, small-world and scale-free networks, are employed, which are embedded with the multi-local-world community structure, to study the naming game. Simulations show that (1) the convergence process to global consensus is getting slower as the community structure becomes more prominent, and eventually might fail; (2) if the inter-community connections are sufficiently dense, neither the number nor the size of the communities affects the convergence process; and (3) for different topologies with the same (or similar) average node-degree, local clustering of individuals obstruct or prohibit global consensus to take place. The results reveal the role of local communities in a global naming game in social network studies.

On the use of big-bang method to generate low-energy structures of atomic clusters modeled with pair potentials of different ranges.

PubMed

Marques, J M C; Pais, A A C C; Abreu, P E

2012-02-05

The efficiency of the so-called big-bang method for the optimization of atomic clusters is analysed in detail for Morse pair potentials with different ranges; here, we have used Morse potentials with four different ranges, from long- ρ = 3) to short-ranged ρ = 14) interactions. Specifically, we study the efficacy of the method in discovering low-energy structures, including the putative global minimum, as a function of the potential range and the cluster size. A new global minimum structure for long-ranged ρ = 3) Morse potential at the cluster size of n= 240 is reported. The present results are useful to assess the maximum cluster size for each type of interaction where the global minimum can be discovered with a limited number of big-bang trials. Copyright © 2011 Wiley Periodicals, Inc.

Grid Transmission Expansion Planning Model Based on Grid Vulnerability

NASA Astrophysics Data System (ADS)

Tang, Quan; Wang, Xi; Li, Ting; Zhang, Quanming; Zhang, Hongli; Li, Huaqiang

2018-03-01

Based on grid vulnerability and uniformity theory, proposed global network structure and state vulnerability factor model used to measure different grid models. established a multi-objective power grid planning model which considering the global power network vulnerability, economy and grid security constraint. Using improved chaos crossover and mutation genetic algorithm to optimize the optimal plan. For the problem of multi-objective optimization, dimension is not uniform, the weight is not easy given. Using principal component analysis (PCA) method to comprehensive assessment of the population every generation, make the results more objective and credible assessment. the feasibility and effectiveness of the proposed model are validated by simulation results of Garver-6 bus system and Garver-18 bus.

A global wetland methane emissions and uncertainty dataset for atmospheric chemical transport models (WetCHARTs version 1.0)

NASA Astrophysics Data System (ADS)

Bloom, A. Anthony; Bowman, Kevin W.; Lee, Meemong; Turner, Alexander J.; Schroeder, Ronny; Worden, John R.; Weidner, Richard; McDonald, Kyle C.; Jacob, Daniel J.

2017-06-01

Wetland emissions remain one of the principal sources of uncertainty in the global atmospheric methane (CH4) budget, largely due to poorly constrained process controls on CH4 production in waterlogged soils. Process-based estimates of global wetland CH4 emissions and their associated uncertainties can provide crucial prior information for model-based top-down CH4 emission estimates. Here we construct a global wetland CH4 emission model ensemble for use in atmospheric chemical transport models (WetCHARTs version 1.0). Our 0.5° × 0.5° resolution model ensemble is based on satellite-derived surface water extent and precipitation reanalyses, nine heterotrophic respiration simulations (eight carbon cycle models and a data-constrained terrestrial carbon cycle analysis) and three temperature dependence parameterizations for the period 2009-2010; an extended ensemble subset based solely on precipitation and the data-constrained terrestrial carbon cycle analysis is derived for the period 2001-2015. We incorporate the mean of the full and extended model ensembles into GEOS-Chem and compare the model against surface measurements of atmospheric CH4; the model performance (site-level and zonal mean anomaly residuals) compares favourably against published wetland CH4 emissions scenarios. We find that uncertainties in carbon decomposition rates and the wetland extent together account for more than 80 % of the dominant uncertainty in the timing, magnitude and seasonal variability in wetland CH4 emissions, although uncertainty in the temperature CH4 : C dependence is a significant contributor to seasonal variations in mid-latitude wetland CH4 emissions. The combination of satellite, carbon cycle models and temperature dependence parameterizations provides a physically informed structural a priori uncertainty that is critical for top-down estimates of wetland CH4 fluxes. Specifically, our ensemble can provide enhanced information on the prior CH4 emission uncertainty and the error covariance structure, as well as a means for using posterior flux estimates and their uncertainties to quantitatively constrain the biogeochemical process controls of global wetland CH4 emissions.

Gradient-based reliability maps for ACM-based segmentation of hippocampus.

PubMed

Zarpalas, Dimitrios; Gkontra, Polyxeni; Daras, Petros; Maglaveras, Nicos

2014-04-01

Automatic segmentation of deep brain structures, such as the hippocampus (HC), in MR images has attracted considerable scientific attention due to the widespread use of MRI and to the principal role of some structures in various mental disorders. In this literature, there exists a substantial amount of work relying on deformable models incorporating prior knowledge about structures' anatomy and shape information. However, shape priors capture global shape characteristics and thus fail to model boundaries of varying properties; HC boundaries present rich, poor, and missing gradient regions. On top of that, shape prior knowledge is blended with image information in the evolution process, through global weighting of the two terms, again neglecting the spatially varying boundary properties, causing segmentation faults. An innovative method is hereby presented that aims to achieve highly accurate HC segmentation in MR images, based on the modeling of boundary properties at each anatomical location and the inclusion of appropriate image information for each of those, within an active contour model framework. Hence, blending of image information and prior knowledge is based on a local weighting map, which mixes gradient information, regional and whole brain statistical information with a multi-atlas-based spatial distribution map of the structure's labels. Experimental results on three different datasets demonstrate the efficacy and accuracy of the proposed method.

Network structure, topology, and dynamics in generalized models of synchronization

NASA Astrophysics Data System (ADS)

Lerman, Kristina; Ghosh, Rumi

2012-08-01

Network structure is a product of both its topology and interactions between its nodes. We explore this claim using the paradigm of distributed synchronization in a network of coupled oscillators. As the network evolves to a global steady state, nodes synchronize in stages, revealing the network's underlying community structure. Traditional models of synchronization assume that interactions between nodes are mediated by a conservative process similar to diffusion. However, social and biological processes are often nonconservative. We propose a model of synchronization in a network of oscillators coupled via nonconservative processes. We study the dynamics of synchronization of a synthetic and real-world networks and show that the traditional and nonconservative models of synchronization reveal different structures within the same network.

Investigation of Structural Dynamics in a 2-Meter Square Solar Sail Model Including Axial Load Effects

NASA Technical Reports Server (NTRS)

Holland, D. B.; Virgin, L. N.; Belvin, W. K.

2003-01-01

This paper presents a parameter study of the effect of boom axial loading on the global dynamics of a 2-meter solar sail scale model. The experimental model used is meant for building expertise in finite element analysis and experimental execution, not as a predecessor to any planned flight mission or particular design concept. The results here are to demonstrate the ability to predict and measure structural dynamics and mode shapes in the presence of axial loading.

CRUST 5.1: A global crustal model at 5° x 5°

USGS Publications Warehouse

Mooney, Walter D.; Laske, Gabi; Masters, T. Guy

1998-01-01

We present a new global model for the Earth's crust based on seismic refraction data published in the period 1948–1995 and a detailed compilation of ice and sediment thickness. An extensive compilation of seismic refraction measurements has been used to determine the crustal structure on continents and their margins. Oceanic crust is modeled with both a standard model for normal oceanic crust, and variants for nonstandard regions, such as oceanic plateaus. Our model (CRUST 5.1) consists of 2592 5° × 5° tiles in which the crust and uppermost mantle are described by eight layers: (1) ice, (2) water, (3) soft sediments, (4) hard sediments, (5) crystalline upper, (6) middle, (7) lower crust, and (8) uppermost mantle. Topography and bathymetry are adopted from a standard database (ETOPO-5). Compressional wave velocity in each layer is based on field measurements, and shear wave velocity and density are estimated using recently published empirical Vp- Vs and Vp-density relationships. The crustal model differs from previous models in that (1) the thickness and seismic/density structure of sedimentary basins is accounted for more completely, (2) the velocity structure of unmeasured regions is estimated using statistical averages that are based on a significantly larger database of crustal structure, (3) the compressional wave, shear wave, and density structure have been explicitly specified using newly available constraints from field and laboratory studies. Thus this global crustal model is based on substantially more data than previous models and differs from them in many important respects. A new map of the thickness of the Earth's crust is presented, and we illustrate the application of this model by using it to provide the crustal correction for surface wave phase velocity maps. Love waves at 40 s are dominantly sensitive to crustal structure, and there is a very close correspondence between observed phase velocities at this period and those predicted by CRUST 5.1. We find that the application of crustal corrections to long-period (167 s) Rayleigh waves significantly increases the variance in the phase velocity maps and strengthens the upper mantle velocity anomalies beneath stable continental regions. A simple calculation of crustal isostacy indicates significant lateral variations in upper mantle density. The model CRUST 5.1 provides a complete description of the physical properties of the Earth's crust at a scale of 5° × 5° and can be used for a wide range of seismological and nonseismological problems.

MQAPRank: improved global protein model quality assessment by learning-to-rank.

PubMed

Jing, Xiaoyang; Dong, Qiwen

2017-05-25

Protein structure prediction has achieved a lot of progress during the last few decades and a greater number of models for a certain sequence can be predicted. Consequently, assessing the qualities of predicted protein models in perspective is one of the key components of successful protein structure prediction. Over the past years, a number of methods have been developed to address this issue, which could be roughly divided into three categories: single methods, quasi-single methods and clustering (or consensus) methods. Although these methods achieve much success at different levels, accurate protein model quality assessment is still an open problem. Here, we present the MQAPRank, a global protein model quality assessment program based on learning-to-rank. The MQAPRank first sorts the decoy models by using single method based on learning-to-rank algorithm to indicate their relative qualities for the target protein. And then it takes the first five models as references to predict the qualities of other models by using average GDT_TS scores between reference models and other models. Benchmarked on CASP11 and 3DRobot datasets, the MQAPRank achieved better performances than other leading protein model quality assessment methods. Recently, the MQAPRank participated in the CASP12 under the group name FDUBio and achieved the state-of-the-art performances. The MQAPRank provides a convenient and powerful tool for protein model quality assessment with the state-of-the-art performances, it is useful for protein structure prediction and model quality assessment usages.

Global force-torque phase diagram for the DNA double helix: structural transitions, triple points and collapsed plectonemes

PubMed Central

Marko, John F.; Neukirch, Sébastien

2014-01-01

We present a free energy model for structural transitions of the DNA double helix driven by tensile and torsional stress. Our model is coarse grained, and is based on semiflexible polymer descriptions of B-DNA, underwound L-DNA, and highly overwound P-DNA. The statistical-mechanical model of plectonemic supercoiling previously developed for B-DNA is applied to semiflexible polymer models of P and L-DNA, to obtain a model of DNA structural transitions in quantitative accord with experiment. We identify two distinct plectonemic states, one “inflated” by electrostatic repulsion and thermal fluctuations, and the other “collapsed”, with the two double helices inside the supercoils driven to close contact. We find that supercoiled B and L are stable only in inflated form, while supercoiled P is always collapsed. We also predict the behavior and experimental signatures of highly underwound “Q”-DNA, the left-handed analog of P-DNA; as for P, supercoiled Q is always collapsed. Overstretched “S”-DNA and strand-separated “stress-melted” DNA are also included in our model, allowing prediction of a global phase diagram for forces up to 1000 pN and torques between ±60 pN nm, or in terms of linking number density, from σ = −5 to +3. PMID:24483501

Seismic imaging: From classical to adjoint tomography

NASA Astrophysics Data System (ADS)

Liu, Q.; Gu, Y. J.

2012-09-01

Seismic tomography has been a vital tool in probing the Earth's internal structure and enhancing our knowledge of dynamical processes in the Earth's crust and mantle. While various tomographic techniques differ in data types utilized (e.g., body vs. surface waves), data sensitivity (ray vs. finite-frequency approximations), and choices of model parameterization and regularization, most global mantle tomographic models agree well at long wavelengths, owing to the presence and typical dimensions of cold subducted oceanic lithospheres and hot, ascending mantle plumes (e.g., in central Pacific and Africa). Structures at relatively small length scales remain controversial, though, as will be discussed in this paper, they are becoming increasingly resolvable with the fast expanding global and regional seismic networks and improved forward modeling and inversion techniques. This review paper aims to provide an overview of classical tomography methods, key debates pertaining to the resolution of mantle tomographic models, as well as to highlight recent theoretical and computational advances in forward-modeling methods that spearheaded the developments in accurate computation of sensitivity kernels and adjoint tomography. The first part of the paper is devoted to traditional traveltime and waveform tomography. While these approaches established a firm foundation for global and regional seismic tomography, data coverage and the use of approximate sensitivity kernels remained as key limiting factors in the resolution of the targeted structures. In comparison to classical tomography, adjoint tomography takes advantage of full 3D numerical simulations in forward modeling and, in many ways, revolutionizes the seismic imaging of heterogeneous structures with strong velocity contrasts. For this reason, this review provides details of the implementation, resolution and potential challenges of adjoint tomography. Further discussions of techniques that are presently popular in seismic array analysis, such as noise correlation functions, receiver functions, inverse scattering imaging, and the adaptation of adjoint tomography to these different datasets highlight the promising future of seismic tomography.

The role of the global magnetic field and thermal conduction on the structure of the accretion disks of all models

NASA Astrophysics Data System (ADS)

Farahinezhad, M.; Khesali, A. R.

2018-05-01

In this paper, the effects of global magnetic field and thermal conduction on the vertical structure of the accretion disks has been investigated. In this study, four types disks were examined: Gas pressure dominated the standard disk, while radiation pressure dominated the standard disk, ADAF disk, slim disk. Moreover, the general shape of the magnetic field, including toroidal and poloidal components, is considered. The magnetohydrodynamic equations were solved in spherical coordinates using self-similar assumptions in the radial direction. Following previous authors, the polar velocity vθ is non-zero and Trφ was considered as a dominant component of the stress tensor. The results show that the disk becomes thicker compared to the non-magnetic fields. It has also been shown that the presence of the thermal conduction in the ADAF model makes the disk thicker; the disk is expanded in the standard model.

Real-time Assimilation of Altimeter Derived Synthetic Profiles Into a Global version of the Naval Research Laboratory's Coastal Ocean Model (NCOM)

NASA Astrophysics Data System (ADS)

Rhodes, R. C.; Barron, C. N.; Fox, D. N.; Smedstad, L. F.

2001-12-01

A global implementation of the Navy Coastal Ocean Model (NCOM), developed by the Naval Research Laboratory (NRL) at Stennis Space Center is currently running in real-time and is planned for transition to the Naval Oceanographic Office (NAVOCEANO) in 2002. The model encompasses the open ocean to 5 m depth on a curvilinear global model grid with 1/8 degree grid spacing at 45N, extending from 80 S to a complete arctic cap with grid singularities mapped into Canada and Russia. Vertically, the model employs 41 sigma-z levels with sigma in the upper-ocean and coastal regions and z in the deeper ocean. The Navy Operational Global Atmospheric Prediction System (NOGAPS) provides 6-hourly wind stresses and heat fluxes for forcing, while the operational Modular Ocean Data Assimilation System (MODAS) provides the background climatology and tools for data pre-processing. Operationally available sea surface temperature (SST) and altimetry (SSH) data are assimilated into the NAVOCEANO global 1/8 degree MODAS 2-D analysis and the 1/16 degree Navy Layered Ocean Model (NLOM) to provide analyses and forecasts of SSH and SST. The 2-D SSH and SST nowcast fields are used as input to the MODAS synthetic climatology database to yield three-dimensional fields of synthetic temperature and salinity for assimilation into global NCOM. The synthetic profiles are weighted higher at depth in the assimilation process to allow the numerical model to properly develop the mixed-layer structure driven by the real-time atmospheric forcing. Global NCOM nowcasts and forecasts provide a valuable resource for rapid response to the varied and often unpredictable operational requests for 3-dimensional fields of ocean temperature, salinity, and currents. In some cases, the resolution of the global product is sufficient for guidance. In cases requiring higher resolution, the global product offers a quick overview of local circulation and provides initial and boundary conditions for higher resolution coastal models that may be more specialized for a particular task or domain. Nowcast and forecast results are presented globally and in selected areas of interest and model results are compared with historical and concurrent observations and analyses.

An economic model of international wood supply, forest stock and forest area change

Treesearch

James A. Turner; Joseph Buongiorno; Shushuai Zhu

2006-01-01

Wood supply, the link between roundwood removals and forest resources, is an important component of forest sector models. This paper develops a model of international wood supply within the structure of the spatial equilibrium Global Forest Products Model. The wood supply model determines, for each country, the annual forest harvest, the annual change of forest stock...

Race and Gender Matter: A Multidimensional Approach to Conceptualizing and Measuring Stress in African American Women

PubMed Central

Woods-Giscombé, Cheryl L.; Lobel, Marci

2008-01-01

Based on prior research and theory, the authors constructed a multidimensional model of stress in African American women comprised of race-related, gender-related, and generic stress. Exposure to and appraisal of these three types of stress were combined into a higher-order global stress factor. Using structural equation modeling, the fit of this stress factor and its ability to predict distress symptoms were examined in 189 socioeconomically diverse African American women aged 21 to 78. Results support the multidimensional conceptualization and operationalization of stress. Race-related, gender-related, and generic stress contributed equally to the global stress factor, and global stress predicted a significant amount of variance in distress symptoms and intensity. This model exhibited better fit than a model without a global stress factor, in which each stress component predicted distress directly. Furthermore, race-related, gender-related, and generic stress did not contribute to distress beyond their representation in the global stress factor. These findings illustrate that stress related to central elements of identity, namely race and gender, cohere with generic stress to define the stress experience of African American women. PMID:18624581

Race and gender matter: a multidimensional approach to conceptualizing and measuring stress in African American women.

PubMed

Woods-Giscombé, Cheryl L; Lobel, Marci

2008-07-01

Based on prior research and theory, the authors constructed a multidimensional model of stress in African American women comprised of race-related, gender-related, and generic stress. Exposure to and appraisal of these three types of stress were combined into a higher-order global stress factor. Using structural equation modeling, the fit of this stress factor and its ability to predict distress symptoms were examined in 189 socioeconomically diverse African American women aged 21 to 78. Results support the multidimensional conceptualization and operationalization of stress. Race-related, gender-related, and generic stress contributed equally to the global stress factor, and global stress predicted a significant amount of variance in distress symptoms and intensity. This model exhibited better fit than a model without a global stress factor, in which each stress component predicted distress directly. Furthermore, race-related, gender-related, and generic stress did not contribute to distress beyond their representation in the global stress factor. These findings illustrate that stress related to central elements of identity, namely race and gender, cohere with generic stress to define the stress experience of African American women. Copyright (c) 2008 APA, all rights reserved.

Dynamic Analyses Including Joints Of Truss Structures

NASA Technical Reports Server (NTRS)

Belvin, W. Keith

1991-01-01

Method for mathematically modeling joints to assess influences of joints on dynamic response of truss structures developed in study. Only structures with low-frequency oscillations considered; only Coulomb friction and viscous damping included in analysis. Focus of effort to obtain finite-element mathematical models of joints exhibiting load-vs.-deflection behavior similar to measured load-vs.-deflection behavior of real joints. Experiments performed to determine stiffness and damping nonlinearities typical of joint hardware. Algorithm for computing coefficients of analytical joint models based on test data developed to enable study of linear and nonlinear effects of joints on global structural response. Besides intended application to large space structures, applications in nonaerospace community include ground-based antennas and earthquake-resistant steel-framed buildings.

Mars Global Reference Atmospheric Model (Mars-GRAM): Release No. 2 - Overview and applications

NASA Technical Reports Server (NTRS)

James, B.; Johnson, D.; Tyree, L.

1993-01-01

The Mars Global Reference Atmospheric Model (Mars-GRAM), a science and engineering model for empirically parameterizing the temperature, pressure, density, and wind structure of the Martian atmosphere, is described with particular attention to the model's newest version, Mars-GRAM, Release No. 2 and to the improvements incorporated into the Release No. 2 model as compared with the Release No. 1 version. These improvements include (1) an addition of a new capability to simulate local-scale Martian dust storms and the growth and decay of these storms; (2) an addition of the Zurek and Haberle (1988) wave perturbation model, for simulating tidal perturbation effects; and (3) a new modular version of Mars-GRAM, for incorporation as a subroutine into other codes.

Exploring future scenarios for the global supply chain of tuna

NASA Astrophysics Data System (ADS)

Mullon, C.; Guillotreau, P.; Galbraith, E. D.; Fortilus, J.; Chaboud, C.; Bopp, L.; Aumont, O.; Kaplan, D.

2017-06-01

The abundance of tuna, an important top predator that ranges throughout tropical and subtropical oceans, is now largely determined by fishing activity. Fishing activity, in turn, is determined by the interaction of fish availability, fishing capacity, fishing costs and global markets for tuna products. In the face of overfishing, the continued sustainable supply of tuna is likely to require improved global governance, that would benefit from modeling frameworks capable of integrating market forces with the availability of fish in order to consider alternative future projections. Here we describe such a modeling framework, in which we develop several simple, contrasting scenarios for the development of the tuna supply chain in order to illustrate the utility of the approach for global evaluation of management strategies for tuna and other complex, stock-structured fisheries. The model includes multiple national and multi-national fishing fleets, canneries and fresh/frozen markets, and connects these to global consumers using a network of flows. The model is calibrated using recent data on fish catch, cannery and fresh/frozen production, and consumption. Scenarios explore the control on future outcomes in the global tuna fishery by representing, in a simple way, the effects of (1) climate change, (2) changes in the global demand for tuna, and (3) changes in the access to fishing grounds (marine reserves). The results emphasize the potential importance of increasing demand in provoking a global collapse, and suggest that controlling tuna production by limiting technical efficiency is a potential countermeasure. Finally we discuss the outcomes in terms of potential extensions of the scenario approach allowed by this global network model of the tuna supply chain.

System analysis tools for an ELT at ESO

NASA Astrophysics Data System (ADS)

Mueller, Michael; Koch, Franz

2006-06-01

Engineering of complex, large scale systems like the ELT designs currently investigated and developed in Europe and Northern America require powerful and sophisticated tools within specific technical disciplines such as mechanics, optics and control engineering. However, even analyzing a certain component of the telescope like the telescope structure necessitates a system approach to evaluate the structural effects onto the optical performance. This paper shows several software tools developed by the European Southern Observatory (ESO) which focus onto the system approach in the analyses: Using modal results of a finite element analysis the SMI-toolbox allows an easy generation of structural models with different sizes and levels of accuracy for the control design and closed-loop simulations. The optical modeling code BeamWarrior was developed by ESO and Astrium GmbH, Germany) especially for integrated modeling and interfering with a structural model. Within BeamWarrior displacements and deformations can be applied in an arbitrary coordinate system, and hence also in the global coordinates of the FE model avoiding error prone transformations. In addition to this, a sparse state space model object was developed for Matlab to gain in computational efficiency and reduced memory requirements due to the sparsity pattern of both the structural models and the control architecture. As one result these tools allow building an integrated model in order to reliably simulate interactions, cross-coupling effects, system responses, and to evaluate global performance. In order to evaluate disturbance effects on the optical performance in openloop more efficiently, an optical evaluation toolbox was built in the FE software ANSYS which performs Zernike decomposition and best-fit computation of the deformations directly in the FE analysis.

Weighting the Parameters, a Response to Bancel׳s "Searching for Global Consciousness: A Seventeen Year Exploration".

PubMed

Nelson, Roger

This brief report is a response to the article by Peter Bancel entitled "Searching for Global Consciousness: A Seventeen Year Exploration" in which he compares a goal orientation (GO) model with a field-like model he refers to as global consciousness (GC). He first attempts to exclude the latter, and then presents selected tests that compare the models. While the article appears to provide support for Bancel׳s conclusion that GC cannot explain the data and must be supplanted by GO, there are good reasons to believe this conclusion is premature at best. I address the vulnerable assumptions underlying Bancel׳s rejection of GC, and then provide multiple examples of parametric structure in the data, which cannot be attributed to GO, but are amenable to explanation by field-like models. Copyright © 2017 Elsevier Inc. All rights reserved.

Exploring the Flux Tube Paradigm in Solar-like Convection Zones

NASA Astrophysics Data System (ADS)

Weber, Maria A.; Nelson, Nicholas; Browning, Matthew

2017-08-01

In the solar context, important insight into the flux emergence process has been obtained by assuming the magnetism giving rise to sunspots consists partly of idealized flux tubes. Global-scale dynamo models are only now beginning to capture some aspects of flux emergence. In certain regimes, these simulations self-consistently generate magnetic flux structures that rise buoyantly through the computational domain. How similar are these dynamo-generated, rising flux structures to traditional flux tube models? The work we present here is a step toward addressing this question. We utilize the thin flux tube (TFT) approximation to simply model the evolution of flux tubes in a global, three-dimensional geometry. The TFTs are embedded in convective flows taken from a global dynamo simulation of a rapidly rotating Sun within which buoyant flux structures arise naturally from wreaths of magnetism. The initial conditions of the TFTs are informed by rising flux structures identified in the dynamo simulation. We compare the trajectories of the dynamo-generated flux loops with those computed through the TFT approach. We also assess the nature of the relevant forces acting on both sets of flux structures, such as buoyancy, the Coriolis force, and external forces imparted by the surrounding convection. To achieve the fast <15 day rise of the buoyant flux structures, we must suppress the large retrograde flow established inside the TFTs which occurs due to a strong conservation of angular momentum as they move outward. This tendency is common in flux tube models in solar-like convection zones, but is not present to the same degree in the dynamo-generated flux loops. We discuss the mechanisms that may be responsible for suppressing the axial flow inside the flux tube, and consider the implications this has regarding the role of the Coriolis force in explaining sunspot latitudes and the observed Joy’s Law trend of active regions. Our work aims to provide constraints, and possible calibrations, on the traditional flux tube model as it pertains to the Sun and other spotted stars.

Global self-esteem, goal achievement orientations, and self-determined behavioural regulations in a physical education setting.

PubMed

Hein, Vello; Hagger, Martin S

2007-01-15

We examined a theoretical model of global self-esteem that incorporated constructs from achievement goal and self-determination theories. The model hypothesized that self-determined or autonomous motives would mediate the influence of achievement goal orientation on global self-esteem. The adapted version of the Behavioural Regulation in Exercise Questionnaire (Mullan et al., 1997), the Perception of Success Questionnaire (Roberts & Balague, 1991), and Rosenberg's (1965) self-esteem scales were administered to 634 high school students aged 11 - 15 years. A structural equation model supported the hypotheses and demonstrated that autonomous motives mediated the effect of goal orientations on global self-esteem. The results suggest that generalized motivational orientations influence self-esteem by affecting autonomous motivation and is consistent with theory that suggests that experiences relating to intrinsic motivation are the mechanism by which global motivational orientations are translated into adaptive outcomes like self-esteem. The findings suggest that physical activity interventions that target autonomous motives in physical activity contexts are likely to enhance young people's general self-esteem.

Regulation, Competition and Network Evolution in Aviation

NASA Technical Reports Server (NTRS)

Gillen, David; Morrison, William

2003-01-01

Our focus is the evolution of business strategies and network structure decisions in the commercial passenger aviation industry. The paper reviews the growth of hub-and-spoke networks as the dominant business model following deregulation in the latter part of the 20 century, followed by the emergence of value-based airlines as a global phenomenon at the end of the century. The paper highlights the link between airline business strategies and network structures, and examines the resulting competition between divergent network structure business models. In this context we discuss issues of market structure stability and the role played by competition policy.

Simulating the Agulhas system in global ocean models - nesting vs. multi-resolution unstructured meshes

NASA Astrophysics Data System (ADS)

Biastoch, Arne; Sein, Dmitry; Durgadoo, Jonathan V.; Wang, Qiang; Danilov, Sergey

2018-01-01

Many questions in ocean and climate modelling require the combined use of high resolution, global coverage and multi-decadal integration length. For this combination, even modern resources limit the use of traditional structured-mesh grids. Here we compare two approaches: A high-resolution grid nested into a global model at coarser resolution (NEMO with AGRIF) and an unstructured-mesh grid (FESOM) which allows to variably enhance resolution where desired. The Agulhas system around South Africa is used as a testcase, providing an energetic interplay of a strong western boundary current and mesoscale dynamics. Its open setting into the horizontal and global overturning circulations also requires global coverage. Both model configurations simulate a reasonable large-scale circulation. Distribution and temporal variability of the wind-driven circulation are quite comparable due to the same atmospheric forcing. However, the overturning circulation differs, owing each model's ability to represent formation and spreading of deep water masses. In terms of regional, high-resolution dynamics, all elements of the Agulhas system are well represented. Owing to the strong nonlinearity in the system, Agulhas Current transports of both configurations and in comparison with observations differ in strength and temporal variability. Similar decadal trends in Agulhas Current transport and Agulhas leakage are linked to the trends in wind forcing.

Moho Modeling Using FFT Technique

NASA Astrophysics Data System (ADS)

Chen, Wenjin; Tenzer, Robert

2017-04-01

To improve the numerical efficiency, the Fast Fourier Transform (FFT) technique was facilitated in Parker-Oldenburg's method for a regional gravimetric Moho recovery, which assumes the Earth's planar approximation. In this study, we extend this definition for global applications while assuming a spherical approximation of the Earth. In particular, we utilize the FFT technique for a global Moho recovery, which is practically realized in two numerical steps. The gravimetric forward modeling is first applied, based on methods for a spherical harmonic analysis and synthesis of the global gravity and lithospheric structure models, to compute the refined gravity field, which comprises mainly the gravitational signature of the Moho geometry. The gravimetric inverse problem is then solved iteratively in order to determine the Moho depth. The application of FFT technique to both numerical steps reduces the computation time to a fraction of that required without applying this fast algorithm. The developed numerical producers are used to estimate the Moho depth globally, and the gravimetric result is validated using the global (CRUST1.0) and regional (ESC) seismic Moho models. The comparison reveals a relatively good agreement between the gravimetric and seismic models, with the RMS of differences (of 4-5 km) at the level of expected uncertainties of used input datasets, while without the presence of significant systematic bias.

Estimation of Uncertainties in the Global Distance Test (GDT_TS) for CASP Models.

PubMed

Li, Wenlin; Schaeffer, R Dustin; Otwinowski, Zbyszek; Grishin, Nick V

2016-01-01

The Critical Assessment of techniques for protein Structure Prediction (or CASP) is a community-wide blind test experiment to reveal the best accomplishments of structure modeling. Assessors have been using the Global Distance Test (GDT_TS) measure to quantify prediction performance since CASP3 in 1998. However, identifying significant score differences between close models is difficult because of the lack of uncertainty estimations for this measure. Here, we utilized the atomic fluctuations caused by structure flexibility to estimate the uncertainty of GDT_TS scores. Structures determined by nuclear magnetic resonance are deposited as ensembles of alternative conformers that reflect the structural flexibility, whereas standard X-ray refinement produces the static structure averaged over time and space for the dynamic ensembles. To recapitulate the structural heterogeneous ensemble in the crystal lattice, we performed time-averaged refinement for X-ray datasets to generate structural ensembles for our GDT_TS uncertainty analysis. Using those generated ensembles, our study demonstrates that the time-averaged refinements produced structure ensembles with better agreement with the experimental datasets than the averaged X-ray structures with B-factors. The uncertainty of the GDT_TS scores, quantified by their standard deviations (SDs), increases for scores lower than 50 and 70, with maximum SDs of 0.3 and 1.23 for X-ray and NMR structures, respectively. We also applied our procedure to the high accuracy version of GDT-based score and produced similar results with slightly higher SDs. To facilitate score comparisons by the community, we developed a user-friendly web server that produces structure ensembles for NMR and X-ray structures and is accessible at http://prodata.swmed.edu/SEnCS. Our work helps to identify the significance of GDT_TS score differences, as well as to provide structure ensembles for estimating SDs of any scores.

Exploring tropical forest vegetation dynamics using the FATES model

NASA Astrophysics Data System (ADS)

Koven, C. D.; Fisher, R.; Knox, R. G.; Chambers, J.; Kueppers, L. M.; Christoffersen, B. O.; Davies, S. J.; Dietze, M.; Holm, J.; Massoud, E. C.; Muller-Landau, H. C.; Powell, T.; Serbin, S.; Shuman, J. K.; Walker, A. P.; Wright, S. J.; Xu, C.

2017-12-01

Tropical forest vegetation dynamics represent a critical climate feedback in the Earth system, which is poorly represented in current global modeling approaches. We discuss recent progress on exploring these dynamics using the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), a demographic vegetation model for the CESM and ACME ESMs. We will discuss benchmarks of FATES predictions for forest structure against inventory sites, sensitivity of FATES predictions of size and age structure to model parameter uncertainty, and experiments using the FATES model to explore PFT competitive dynamics and the dynamics of size and age distributions in responses to changing climate and CO2.

Interactive effects of warming, eutrophication and size structure: impacts on biodiversity and food-web structure.

PubMed

Binzer, Amrei; Guill, Christian; Rall, Björn C; Brose, Ulrich

2016-01-01

Warming and eutrophication are two of the most important global change stressors for natural ecosystems, but their interaction is poorly understood. We used a dynamic model of complex, size-structured food webs to assess interactive effects on diversity and network structure. We found antagonistic impacts: Warming increases diversity in eutrophic systems and decreases it in oligotrophic systems. These effects interact with the community size structure: Communities of similarly sized species such as parasitoid-host systems are stabilized by warming and destabilized by eutrophication, whereas the diversity of size-structured predator-prey networks decreases strongly with warming, but decreases only weakly with eutrophication. Nonrandom extinction risks for generalists and specialists lead to higher connectance in networks without size structure and lower connectance in size-structured communities. Overall, our results unravel interactive impacts of warming and eutrophication and suggest that size structure may serve as an important proxy for predicting the community sensitivity to these global change stressors. © 2015 John Wiley & Sons Ltd.

Optimizing Land and Water Use at the Local Level to Enhance Global Food Security through Virtual Resources Trade in the World

NASA Astrophysics Data System (ADS)

Cai, X.; Zhang, X.; Zhu, T.

2014-12-01

Global food security is constrained by local and regional land and water availability, as well as other agricultural input limitations and inappropriate national and global regulations. In a theoretical context, this study assumes that optimal water and land uses in local food production to maximize food security and social welfare at the global level can be driven by global trade. It follows the context of "virtual resources trade", i.e., utilizing international trade of agricultural commodities to reduce dependency on local resources, and achieves land and water savings in the world. An optimization model based on the partial equilibrium of agriculture is developed for the analysis, including local commodity production and land and water resources constraints, demand by country, and global food market. Through the model, the marginal values (MVs) of social welfare for water and land at the level of so-called food production units (i.e., sub-basins with similar agricultural production conditions) are derived and mapped in the world. In this personation, we will introduce the model structure, explain the meaning of MVs at the local level and their distribution around the world, and discuss the policy implications for global communities to enhance global food security. In particular, we will examine the economic values of water and land under different world targets of food security (e.g., number of malnourished population or children in a future year). In addition, we will also discuss the opportunities on data to improve such global modeling exercises.

Simulation of the spatial frequency-dependent sensitivities of Acoustic Emission sensors

NASA Astrophysics Data System (ADS)

Boulay, N.; Lhémery, A.; Zhang, F.

2018-05-01

Typical configurations of nondestructive testing by Acoustic Emission (NDT/AE) make use of multiple sensors positioned on the tested structure for detecting evolving flaws and possibly locating them by triangulation. Sensors positions must be optimized for ensuring global coverage sensitivity to AE events and minimizing their number. A simulator of NDT/AE is under development to provide help with designing testing configurations and with interpreting measurements. A global model performs sub-models simulating the various phenomena taking place at different spatial and temporal scales (crack growth, AE source and radiation, wave propagation in the structure, reception by sensors). In this context, accurate modelling of sensors behaviour must be developed. These sensors generally consist of a cylindrical piezoelectric element of radius approximately equal to its thickness, without damping and bonded to its case. Sensors themselves are bonded to the structure being tested. Here, a multiphysics finite element simulation tool is used to study the complex behaviour of AE sensor. The simulated behaviour is shown to accurately reproduce the high-amplitude measured contributions used in the AE practice.

Influence of cirrus clouds on weather and climate processes A global perspective

NASA Technical Reports Server (NTRS)

Liou, K.-N.

1986-01-01

Current understanding and knowledge of the composition and structure of cirrus clouds are reviewed and documented in this paper. In addition, the radiative properties of cirrus clouds as they relate to weather and climate processes are described in detail. To place the relevance and importance of cirrus composition, structure and radiative properties into a global perspective, pertinent results derived from simulation experiments utilizing models with varying degrees of complexity are presented; these have been carried out for the investigation of the influence of cirrus clouds on the thermodynamics and dynamics of the atmosphere. In light of these reviews, suggestions are outlined for cirrus-radiation research activities aimed toward the development and improvement of weather and climate models for a physical understanding of cause and effect relationships and for prediction purposes.

Supersonic Flow Field Investigation Using a Fiber-optic based Doppler Global Velocimeter

NASA Technical Reports Server (NTRS)

Meyers, James F.; Lee, Joseph W.; Fletcher, Mark T.; Cavone, Angelo A.; AscencionGuerreroViramontes, J.

2006-01-01

A three-component fiber-optic based Doppler Global Velocimeter was constructed, evaluated and used to measure shock structures about a low-sonic boom model in a Mach 2 flow. The system was designed to have maximum flexibility in its ability to measure flows with restricted optical access and in various facilities. System layout is described along with techniques developed for production supersonic testing. System evaluation in the Unitary Plan Wind Tunnel showed a common acceptance angle of f4 among the three views with velocity measurement resolutions comparable with free-space systems. Flow field measurements of shock structures above a flat plate with an attached ellipsoid-cylinder store and a low-sonic boom model are presented to demonstrate the capabilities of the system during production testing.

Spatial network surrogates for disentangling complex system structure from spatial embedding of nodes

NASA Astrophysics Data System (ADS)

Wiedermann, Marc; Donges, Jonathan F.; Kurths, Jürgen; Donner, Reik V.

2016-04-01

Networks with nodes embedded in a metric space have gained increasing interest in recent years. The effects of spatial embedding on the networks' structural characteristics, however, are rarely taken into account when studying their macroscopic properties. Here, we propose a hierarchy of null models to generate random surrogates from a given spatially embedded network that can preserve certain global and local statistics associated with the nodes' embedding in a metric space. Comparing the original network's and the resulting surrogates' global characteristics allows one to quantify to what extent these characteristics are already predetermined by the spatial embedding of the nodes and links. We apply our framework to various real-world spatial networks and show that the proposed models capture macroscopic properties of the networks under study much better than standard random network models that do not account for the nodes' spatial embedding. Depending on the actual performance of the proposed null models, the networks are categorized into different classes. Since many real-world complex networks are in fact spatial networks, the proposed approach is relevant for disentangling the underlying complex system structure from spatial embedding of nodes in many fields, ranging from social systems over infrastructure and neurophysiology to climatology.

Development of the Global Earthquake Model’s neotectonic fault database

USGS Publications Warehouse

Christophersen, Annemarie; Litchfield, Nicola; Berryman, Kelvin; Thomas, Richard; Basili, Roberto; Wallace, Laura; Ries, William; Hayes, Gavin P.; Haller, Kathleen M.; Yoshioka, Toshikazu; Koehler, Richard D.; Clark, Dan; Wolfson-Schwehr, Monica; Boettcher, Margaret S.; Villamor, Pilar; Horspool, Nick; Ornthammarath, Teraphan; Zuñiga, Ramon; Langridge, Robert M.; Stirling, Mark W.; Goded, Tatiana; Costa, Carlos; Yeats, Robert

2015-01-01

The Global Earthquake Model (GEM) aims to develop uniform, openly available, standards, datasets and tools for worldwide seismic risk assessment through global collaboration, transparent communication and adapting state-of-the-art science. GEM Faulted Earth (GFE) is one of GEM’s global hazard module projects. This paper describes GFE’s development of a modern neotectonic fault database and a unique graphical interface for the compilation of new fault data. A key design principle is that of an electronic field notebook for capturing observations a geologist would make about a fault. The database is designed to accommodate abundant as well as sparse fault observations. It features two layers, one for capturing neotectonic faults and fold observations, and the other to calculate potential earthquake fault sources from the observations. In order to test the flexibility of the database structure and to start a global compilation, five preexisting databases have been uploaded to the first layer and two to the second. In addition, the GFE project has characterised the world’s approximately 55,000 km of subduction interfaces in a globally consistent manner as a basis for generating earthquake event sets for inclusion in earthquake hazard and risk modelling. Following the subduction interface fault schema and including the trace attributes of the GFE database schema, the 2500-km-long frontal thrust fault system of the Himalaya has also been characterised. We propose the database structure to be used widely, so that neotectonic fault data can make a more complete and beneficial contribution to seismic hazard and risk characterisation globally.

Achieving development goals for HIV, tuberculosis and malaria in sub-Saharan Africa through integrated antenatal care: barriers and challenges.

PubMed

Fowkes, Freya J I; Draper, Bridget L; Hellard, Margaret; Stoové, Mark

2016-12-12

The global health community is currently transitioning from the Millennium Development Goals (MDGs) to the Sustainable Development Goals (SDGs). Unfortunately, progress towards maternal, newborn and infant health MDGs has lagged significantly behind other key health goals, demanding a renewed global effort in this key health area. The World Health Organization and other institutions heralded integrated antenatal care (ANC) as the best way to address the inter-related health issues of HIV, tuberculosis (TB) and malaria in the high risk groups of pregnant women and infants; integrated ANC services also offer a mechanism to address slow progress towards improved maternal health. There is remarkably limited evidence on best practice approaches of program implementation, acceptability and effectiveness for integrated ANC models targeting multiple diseases. Here, we discuss current integrated ANC global guidelines and the limited literature describing integrated ANC implementation and evidence for their role in addressing HIV, malaria and TB during pregnancy in sub-Saharan Africa. We highlight the paucity of data on the effectiveness of integrated ANC models and identify significant structural barriers in the health system (funding, infrastructure, distribution, human resources), the adoption system (limited buy-in from implementers, leadership, governance) and, in the broader context, patient-centred barriers (fear, stigma, personal burdens) and barriers in funding structures. We highlight recommendations for action and discuss avenues for the global health community to develop systems to integrate multiple disease programs into ANC models of care that better address these three priority infectious diseases. With the current transition to the SDGs and concerns regarding the failure to meet maternal health MDGs, the global health community, researchers, implementers and funding bodies must work together to ensure the establishment of quality operational and implementation research to inform integrated ANC models. It is imperative that the global health community engages in a timely discussion about such implementation innovations and instigates appropriate actions to ensure advances in maternal health are sufficient to meet applicable SDGs.

Cheminformatics-aided pharmacovigilance: application to Stevens-Johnson Syndrome

PubMed Central

Low, Yen S; Caster, Ola; Bergvall, Tomas; Fourches, Denis; Zang, Xiaoling; Norén, G Niklas; Rusyn, Ivan; Edwards, Ralph

2016-01-01

Objective Quantitative Structure-Activity Relationship (QSAR) models can predict adverse drug reactions (ADRs), and thus provide early warnings of potential hazards. Timely identification of potential safety concerns could protect patients and aid early diagnosis of ADRs among the exposed. Our objective was to determine whether global spontaneous reporting patterns might allow chemical substructures associated with Stevens-Johnson Syndrome (SJS) to be identified and utilized for ADR prediction by QSAR models. Materials and Methods Using a reference set of 364 drugs having positive or negative reporting correlations with SJS in the VigiBase global repository of individual case safety reports (Uppsala Monitoring Center, Uppsala, Sweden), chemical descriptors were computed from drug molecular structures. Random Forest and Support Vector Machines methods were used to develop QSAR models, which were validated by external 5-fold cross validation. Models were employed for virtual screening of DrugBank to predict SJS actives and inactives, which were corroborated using knowledge bases like VigiBase, ChemoText, and MicroMedex (Truven Health Analytics Inc, Ann Arbor, Michigan). Results We developed QSAR models that could accurately predict if drugs were associated with SJS (area under the curve of 75%–81%). Our 10 most active and inactive predictions were substantiated by SJS reports (or lack thereof) in the literature. Discussion Interpretation of QSAR models in terms of significant chemical descriptors suggested novel SJS structural alerts. Conclusions We have demonstrated that QSAR models can accurately identify SJS active and inactive drugs. Requiring chemical structures only, QSAR models provide effective computational means to flag potentially harmful drugs for subsequent targeted surveillance and pharmacoepidemiologic investigations. PMID:26499102

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines

PubMed Central

2014-01-01

Background It is important to predict the quality of a protein structural model before its native structure is known. The method that can predict the absolute local quality of individual residues in a single protein model is rare, yet particularly needed for using, ranking and refining protein models. Results We developed a machine learning tool (SMOQ) that can predict the distance deviation of each residue in a single protein model. SMOQ uses support vector machines (SVM) with protein sequence and structural features (i.e. basic feature set), including amino acid sequence, secondary structures, solvent accessibilities, and residue-residue contacts to make predictions. We also trained a SVM model with two new additional features (profiles and SOV scores) on 20 CASP8 targets and found that including them can only improve the performance when real deviations between native and model are higher than 5Å. The SMOQ tool finally released uses the basic feature set trained on 85 CASP8 targets. Moreover, SMOQ implemented a way to convert predicted local quality scores into a global quality score. SMOQ was tested on the 84 CASP9 single-domain targets. The average difference between the residue-specific distance deviation predicted by our method and the actual distance deviation on the test data is 2.637Å. The global quality prediction accuracy of the tool is comparable to other good tools on the same benchmark. Conclusion SMOQ is a useful tool for protein single model quality assessment. Its source code and executable are available at: http://sysbio.rnet.missouri.edu/multicom_toolbox/. PMID:24776231

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines.

PubMed

Cao, Renzhi; Wang, Zheng; Wang, Yiheng; Cheng, Jianlin

2014-04-28

It is important to predict the quality of a protein structural model before its native structure is known. The method that can predict the absolute local quality of individual residues in a single protein model is rare, yet particularly needed for using, ranking and refining protein models. We developed a machine learning tool (SMOQ) that can predict the distance deviation of each residue in a single protein model. SMOQ uses support vector machines (SVM) with protein sequence and structural features (i.e. basic feature set), including amino acid sequence, secondary structures, solvent accessibilities, and residue-residue contacts to make predictions. We also trained a SVM model with two new additional features (profiles and SOV scores) on 20 CASP8 targets and found that including them can only improve the performance when real deviations between native and model are higher than 5Å. The SMOQ tool finally released uses the basic feature set trained on 85 CASP8 targets. Moreover, SMOQ implemented a way to convert predicted local quality scores into a global quality score. SMOQ was tested on the 84 CASP9 single-domain targets. The average difference between the residue-specific distance deviation predicted by our method and the actual distance deviation on the test data is 2.637Å. The global quality prediction accuracy of the tool is comparable to other good tools on the same benchmark. SMOQ is a useful tool for protein single model quality assessment. Its source code and executable are available at: http://sysbio.rnet.missouri.edu/multicom_toolbox/.

Globalization of the economy and women's work in a sustainable society.

PubMed

Mies, M

1998-01-01

This article critiques theories of development and growth models, which are not compatible with conservation of resources, women's empowerment, and a sustainable society. Affluent societies are using up most of the world's resources in unsustainable ways. Industrial giants have co-opted the term "sustainability." This gender discussion addresses the issue of patriarchal and capitalist systems and presents a new theoretical framework. The author disagrees with the global division of labor, where women are manipulated as producer-housewives and consumer-housewives, and with the global level of violence against women, in general. Gender equality is not viable in the present patriarchal order. In all economic theories, women's work is a free resource and invisible as unpaid housework and nurturing work. The globalization of the economy leads to greater capital and power concentration in the hands of a few. Women are ill served by structural adjustment policies. New global restructuring has improved the welfare of Third World elites. Globalization of capital and new technology makes ethics obsolete. A new economic model must be based on the preservation of life at the center, with livelihood based on wage labor and unpaid work, control of communal assets, and solidarity of communities. Unpaid necessary social labor must be shared by men and women equally. The checklist for change includes, for example, that money would be a means of circulation, not of accumulation. Nature would be reintegrated into economics. There must be new meanings for work, productive labor, economics, the good life, satisfaction of needs, and political structures.

Spatially-explicit models of global tree density.

PubMed

Glick, Henry B; Bettigole, Charlie; Maynard, Daniel S; Covey, Kristofer R; Smith, Jeffrey R; Crowther, Thomas W

2016-08-16

Remote sensing and geographic analysis of woody vegetation provide means of evaluating the distribution of natural resources, patterns of biodiversity and ecosystem structure, and socio-economic drivers of resource utilization. While these methods bring geographic datasets with global coverage into our day-to-day analytic spheres, many of the studies that rely on these strategies do not capitalize on the extensive collection of existing field data. We present the methods and maps associated with the first spatially-explicit models of global tree density, which relied on over 420,000 forest inventory field plots from around the world. This research is the result of a collaborative effort engaging over 20 scientists and institutions, and capitalizes on an array of analytical strategies. Our spatial data products offer precise estimates of the number of trees at global and biome scales, but should not be used for local-level estimation. At larger scales, these datasets can contribute valuable insight into resource management, ecological modelling efforts, and the quantification of ecosystem services.

The Magnetospheric Constellation Mission. Dynamic Response and Coupling Observatory (DRACO): Understanding the Global Dynamics of the Structured Magnetotail

NASA Technical Reports Server (NTRS)

2001-01-01

Magnetospheric Constellation Dynamic Response and Coupling Observatory (DRACO) is the Solar Terrestrial Probe (STP) designed to understand the nonlinear dynamics, responses, and connections within the Earth's structured magnetotail, using a constellation of approximately 50 to 100 distributed vector measurement spacecraft. DRACO will reveal magnetotail processes operating within a domain extending 20 Earth radii (R(sub E)) across the tail and 40 R(sub E)down the tail, on spatial and time scales accessible to global circulation models, i.e., approximately 2 R(sub E) and 10 seconds.

The storage capacity of Potts models for semantic memory retrieval

NASA Astrophysics Data System (ADS)

Kropff, Emilio; Treves, Alessandro

2005-08-01

We introduce and analyse a minimal network model of semantic memory in the human brain. The model is a global associative memory structured as a collection of N local modules, each coding a feature, which can take S possible values, with a global sparseness a (the average fraction of features describing a concept). We show that, under optimal conditions, the number cM of modules connected on average to a module can range widely between very sparse connectivity (high dilution, c_{M}/N\\to 0 ) and full connectivity (c_{M}\\to N ), maintaining a global network storage capacity (the maximum number pc of stored and retrievable concepts) that scales like pc~cMS2/a, with logarithmic corrections consistent with the constraint that each synapse may store up to a fraction of a bit.

OESbathy version 1.0: a method for reconstructing ocean bathymetry with realistic continental shelf-slope-rise structures

NASA Astrophysics Data System (ADS)

Goswami, A.; Olson, P. L.; Hinnov, L. A.; Gnanadesikan, A.

2015-04-01

We present a method for reconstructing global ocean bathymetry that uses a plate cooling model for the oceanic lithosphere, the age distribution of the oceanic crust, global oceanic sediment thicknesses, plus shelf-slope-rise structures calibrated at modern active and passive continental margins. Our motivation is to reconstruct realistic ocean bathymetry based on parameterized relationships of present-day variables that can be applied to global oceans in the geologic past, and to isolate locations where anomalous processes such as mantle convection may affect bathymetry. Parameters of the plate cooling model are combined with ocean crustal age to calculate depth-to-basement. To the depth-to-basement we add an isostatically adjusted, multicomponent sediment layer, constrained by sediment thickness in the modern oceans and marginal seas. A continental shelf-slope-rise structure completes the bathymetry reconstruction, extending from the ocean crust to the coastlines. Shelf-slope-rise structures at active and passive margins are parameterized using modern ocean bathymetry at locations where a complete history of seafloor spreading is preserved. This includes the coastal regions of the North, South, and Central Atlantic Ocean, the Southern Ocean between Australia and Antarctica, and the Pacific Ocean off the west coast of South America. The final products are global maps at 0.1° × 0.1° resolution of depth-to-basement, ocean bathymetry with an isostatically adjusted, multicomponent sediment layer, and ocean bathymetry with reconstructed continental shelf-slope-rise structures. Our reconstructed bathymetry agrees with the measured ETOPO1 bathymetry at most passive margins, including the east coast of North America, north coast of the Arabian Sea, and northeast and southeast coasts of South America. There is disagreement at margins with anomalous continental shelf-slope-rise structures, such as around the Arctic Ocean, the Falkland Islands, and Indonesia.

A decentralized linear quadratic control design method for flexible structures

NASA Technical Reports Server (NTRS)

Su, Tzu-Jeng; Craig, Roy R., Jr.

1990-01-01

A decentralized suboptimal linear quadratic control design procedure which combines substructural synthesis, model reduction, decentralized control design, subcontroller synthesis, and controller reduction is proposed for the design of reduced-order controllers for flexible structures. The procedure starts with a definition of the continuum structure to be controlled. An evaluation model of finite dimension is obtained by the finite element method. Then, the finite element model is decomposed into several substructures by using a natural decomposition called substructuring decomposition. Each substructure, at this point, still has too large a dimension and must be reduced to a size that is Riccati-solvable. Model reduction of each substructure can be performed by using any existing model reduction method, e.g., modal truncation, balanced reduction, Krylov model reduction, or mixed-mode method. Then, based on the reduced substructure model, a subcontroller is designed by an LQ optimal control method for each substructure independently. After all subcontrollers are designed, a controller synthesis method called substructural controller synthesis is employed to synthesize all subcontrollers into a global controller. The assembling scheme used is the same as that employed for the structure matrices. Finally, a controller reduction scheme, called the equivalent impulse response energy controller (EIREC) reduction algorithm, is used to reduce the global controller to a reasonable size for implementation. The EIREC reduced controller preserves the impulse response energy of the full-order controller and has the property of matching low-frequency moments and low-frequency power moments. An advantage of the substructural controller synthesis method is that it relieves the computational burden associated with dimensionality. Besides that, the SCS design scheme is also a highly adaptable controller synthesis method for structures with varying configuration, or varying mass and stiffness properties.

Mantle shear-wave tomography and the fate of subducted slabs.

PubMed

Grand, Steven P

2002-11-15

A new seismic model of the three-dimensional variation in shear velocity throughout the Earth's mantle is presented. The model is derived entirely from shear bodywave travel times. Multibounce shear waves, core-reflected waves and SKS and SKKS waves that travel through the core are used in the analysis. A unique aspect of the dataset used in this study is the use of bodywaves that turn at shallow depths in the mantle, some of which are triplicated. The new model is compared with other global shear models. Although competing models show significant variations, several large-scale structures are common to most of the models. The high-velocity anomalies are mostly associated with subduction zones. In some regions the anomalies only extend into the shallow lower mantle, whereas in other regions tabular high-velocity structures seem to extend to the deepest mantle. The base of the mantle shows long-wavelength high-velocity zones also associated with subduction zones. The heterogeneity seen in global tomography models is difficult to interpret in terms of mantle flow due to variations in structure from one subduction zone to another. The simplest interpretation of the seismic images is that slabs in general penetrate to the deepest mantle, although the flow is likely to be sporadic. The interruption in slab sinking is likely to be associated with the 660 km discontinuity.

A Cross-Cultural Test of the Work-Family Interface in 48 Countries

ERIC Educational Resources Information Center

Jeffrey Hill, E.; Yang, Chongming; Hawkins, Alan J.; Ferris, Maria

2004-01-01

This study tests a cross-cultural model of the work-family interface. Using multigroup structural equation modeling with IBM survey responses from 48 countries (N= 25,380), results show that the same work-family interface model that fits the data globally also fits the data in a four-group model composed of culturally related groups of countries,…

Comparison of Global and Mode of Action-Based Models for Aquatic Toxicity

EPA Science Inventory

The ability to estimate aquatic toxicity for a wide variety of chemicals is a critical need for ecological risk assessment and chemical regulation. The consensus in the literature is that mode of action (MOA) based QSAR (Quantitative Structure Activity Relationship) models yield ...

MicroRNAfold: pre-microRNA secondary structure prediction based on modified NCM model with thermodynamics-based scoring strategy.

PubMed

Han, Dianwei; Zhang, Jun; Tang, Guiliang

2012-01-01

An accurate prediction of the pre-microRNA secondary structure is important in miRNA informatics. Based on a recently proposed model, nucleotide cyclic motifs (NCM), to predict RNA secondary structure, we propose and implement a Modified NCM (MNCM) model with a physics-based scoring strategy to tackle the problem of pre-microRNA folding. Our microRNAfold is implemented using a global optimal algorithm based on the bottom-up local optimal solutions. Our experimental results show that microRNAfold outperforms the current leading prediction tools in terms of True Negative rate, False Negative rate, Specificity, and Matthews coefficient ratio.

Modeling global scene factors in attention

NASA Astrophysics Data System (ADS)

Torralba, Antonio

2003-07-01

Models of visual attention have focused predominantly on bottom-up approaches that ignored structured contextual and scene information. I propose a model of contextual cueing for attention guidance based on the global scene configuration. It is shown that the statistics of low-level features across the whole image can be used to prime the presence or absence of objects in the scene and to predict their location, scale, and appearance before exploring the image. In this scheme, visual context information can become available early in the visual processing chain, which allows modulation of the saliency of image regions and provides an efficient shortcut for object detection and recognition. 2003 Optical Society of America

[Review of dynamic global vegetation models (DGVMs)].

PubMed

Che, Ming-Liang; Chen, Bao-Zhang; Wang, Ying; Guo, Xiang-Yun

2014-01-01

Dynamic global vegetation model (DGVM) is an important and efficient tool for study on the terrestrial carbon circle processes and vegetation dynamics. This paper reviewed the development history of DGVMs, introduced the basic structure of DGVMs, and the outlines of several world-widely used DGVMs, including CLM-DGVM, LPJ, IBIS and SEIB. The shortages of the description of dynamic vegetation mechanisms in the current DGVMs were proposed, including plant functional types (PFT) scheme, vegetation competition, disturbance, and phenology. Then the future research directions of DGVMs were pointed out, i. e. improving the PFT scheme, refining the vegetation dynamic mechanism, and implementing a model inter-comparison project.

Inferring global upper-mantle shear attenuation structure by waveform tomography using the spectral element method

NASA Astrophysics Data System (ADS)

Karaoǧlu, Haydar; Romanowicz, Barbara

2018-06-01

We present a global upper-mantle shear wave attenuation model that is built through a hybrid full-waveform inversion algorithm applied to long-period waveforms, using the spectral element method for wavefield computations. Our inversion strategy is based on an iterative approach that involves the inversion for successive updates in the attenuation parameter (δ Q^{-1}_μ) and elastic parameters (isotropic velocity VS, and radial anisotropy parameter ξ) through a Gauss-Newton-type optimization scheme that employs envelope- and waveform-type misfit functionals for the two steps, respectively. We also include source and receiver terms in the inversion steps for attenuation structure. We conducted a total of eight iterations (six for attenuation and two for elastic structure), and one inversion for updates to source parameters. The starting model included the elastic part of the relatively high-resolution 3-D whole mantle seismic velocity model, SEMUCB-WM1, which served to account for elastic focusing effects. The data set is a subset of the three-component surface waveform data set, filtered between 400 and 60 s, that contributed to the construction of the whole-mantle tomographic model SEMUCB-WM1. We applied strict selection criteria to this data set for the attenuation iteration steps, and investigated the effect of attenuation crustal structure on the retrieved mantle attenuation structure. While a constant 1-D Qμ model with a constant value of 165 throughout the upper mantle was used as starting model for attenuation inversion, we were able to recover, in depth extent and strength, the high-attenuation zone present in the depth range 80-200 km. The final 3-D model, SEMUCB-UMQ, shows strong correlation with tectonic features down to 200-250 km depth, with low attenuation beneath the cratons, stable parts of continents and regions of old oceanic crust, and high attenuation along mid-ocean ridges and backarcs. Below 250 km, we observe strong attenuation in the southwestern Pacific and eastern Africa, while low attenuation zones fade beneath most of the cratons. The strong negative correlation of Q^{-1}_μ and VS anomalies at shallow upper-mantle depths points to a common dominant origin for the two, likely due to variations in thermal structure. A comparison with two other global upper-mantle attenuation models shows promising consistency. As we updated the elastic 3-D model in alternate iterations, we found that the VS part of the model was stable, while the ξ structure evolution was more pronounced, indicating that it may be important to include 3-D attenuation effects when inverting for ξ, possibly due to the influence of dispersion corrections on this less well-constrained parameter.

Comparison of modeling approaches for carbon partitioning: Impact on estimates of global net primary production and equilibrium biomass of woody vegetation from MODIS GPP

Treesearch

Takeshi Ise; Creighton M. Litton; Christian P. Giardina; Akihiko Ito

2010-01-01

Partitioning of gross primary production (GPP) to aboveground versus belowground, to growth versus respiration, and to short versus long�]lived tissues exerts a strong influence on ecosystem structure and function, with potentially large implications for the global carbon budget. A recent meta-analysis of forest ecosystems suggests that carbon partitioning...

Global Modeling of Spur Formation in Spiral Galaxies

NASA Astrophysics Data System (ADS)

Shetty, Rahul; Ostriker, Eve C.

2006-08-01

We investigate the formation of substructure in spiral galaxies using global MHD simulations, including gas self-gravity. Local modeling by Kim & Ostriker previously showed that self-gravity and magnetic fields cause rapid growth of overdensities in spiral arms; differential compression of gas flowing through the arms then results in the formation of sheared structures in the interarms. These sheared structures resemble features described as spurs or feathers in optical and IR observations of many spiral galaxies. Global modeling extends previous local models by including the full effects of curvilinear coordinates, a realistic log-spiral perturbation, self-gravitational contribution from five radial wavelengths of the spiral shock, and variation of density and epicyclic frequency with radius. We show that with realistic Toomre Q-values self-gravity and galactic differential rotation produce filamentary gaseous structures with kiloparsec-scale separations, regardless of the strength-or even presence-of a stellar spiral potential. However, a sufficiently strong spiral potential is required to produce true spurs, consisting of interarm structures emerging from gas concentrations in the main spiral arms. In models where Q is initially constant, filaments due to interarm self-gravity grow mainly in the outer regions, whereas true arm spurs grow only in the inner regions. For models with Q~R, outer regions are intrinsically more stable, so background interarm filaments do not grow, but arm spurs can develop if the spiral potential is strong. Unlike independently growing background filaments, the orientation of arm spurs depends on galactic location. Inside corotation, spurs emanate outward, on the convex side of the arm; outside corotation, spurs grow inward, on the concave side of the arm. Based on orientation and the relation to arm clumps, it is possible to distinguish true spurs that originate as instabilities in the arms from independently growing background filaments. We measure spur spacings of ~3-5 times the Jeans length in the arm and arm clump masses of ~107 Msolar. Finally, we have also studied models without self-gravity, finding that magnetic fields suppress a purely hydrodynamic instability recently proposed by Wada & Koda as a means of growing interarm spurs and feathers. Our models also suggest that magnetic fields are important in preserving grand-design spiral structure when gas in the arms fragments via self-gravity into GMCs.

A Global Comparison of the Human and T. brucei Degradomes Gives Insights about Possible Parasite Drug Targets

PubMed Central

Mashiyama, Susan T.; Koupparis, Kyriacos; Caffrey, Conor R.; McKerrow, James H.; Babbitt, Patricia C.

2012-01-01

We performed a genome-level computational study of sequence and structure similarity, the latter using crystal structures and models, of the proteases of Homo sapiens and the human parasite Trypanosoma brucei. Using sequence and structure similarity networks to summarize the results, we constructed global views that show visually the relative abundance and variety of proteases in the degradome landscapes of these two species, and provide insights into evolutionary relationships between proteases. The results also indicate how broadly these sequence sets are covered by three-dimensional structures. These views facilitate cross-species comparisons and offer clues for drug design from knowledge about the sequences and structures of potential drug targets and their homologs. Two protease groups (“M32” and “C51”) that are very different in sequence from human proteases are examined in structural detail, illustrating the application of this global approach in mining new pathogen genomes for potential drug targets. Based on our analyses, a human ACE2 inhibitor was selected for experimental testing on one of these parasite proteases, TbM32, and was shown to inhibit it. These sequence and structure data, along with interactive versions of the protein similarity networks generated in this study, are available at http://babbittlab.ucsf.edu/resources.html. PMID:23236535

Processes of Equatorial Thermal Structure: An Analysis of Galileo Temperature Profile with 3-D Model

NASA Technical Reports Server (NTRS)

Majeed, T.; Waite, J. H., Jr.; Bougher, S. W.; Gladstone, G. R.

2005-01-01

The Jupiter Thermosphere General Circulation Model (JTGCM) calculates the global dynamical structure of Jupiter's thermosphere self-consistently with its global thermal structure and composition. The main heat source that drives the thermospheric flow is high-latitude Joule heating. A secondary source of heating is the auroral process of particle precipitation. Global simulations of Jovian thermospheric dynamics indicate strong neutral outflows from the auroral ovals with velocities up to approximately 2 kilometers per second and subsequent convergence and downwelling at the Jovian equator. Such circulation is shown to be an important process for transporting significant amounts of auroral energy to equatorial latitudes and for regulating the global heat budget in a manner consistent with the high thermospheric temperatures observed by the Galileo probe. Adiabatic compression of the neutral atmosphere resulting from downward motion is an important source of equatorial heating (less than 0.06 microbar). The adiabatic heating continues to dominate between 0.06 and 0.2 microbar, but with an addition of comparable heating due to horizontal advection induced by the meridional flow. Thermal conduction plays an important role in transporting heat down to lower altitudes (greater than 0.2microbar) where it is balanced by the cooling associated with the wind transport processes. Interestingly, we find that radiative cooling caused by H3(+), CH4, and C2H2 emissions does not play a significant role in interpreting the Galileo temperature profile.

Toward a Model of Expert Knowledge Structure and Their Role in Cognitive Task Performance

DTIC Science & Technology

1993-11-01

ONR. I I ’Ibis project addressed the role of knowledge organization in skilled cognitive task performance. In particular, this work focused on three...aspects. I EDETERMKNOWLEDGES STRUCTURE MEASURES Figure 1. Knowledge Structure Domain. The work performed under this contract is divided into three...for knowledge structure development would lead to a more global training approach. As such, this effort attempted to define the scope of further work

Spectral-element global waveform tomography: A second-generation upper-mantle model

NASA Astrophysics Data System (ADS)

French, S. W.; Lekic, V.; Romanowicz, B. A.

2012-12-01

The SEMum model of Lekic and Romanowicz (2011a) was the first global upper-mantle VS model obtained using whole-waveform inversion with spectral element (SEM: Komatitsch and Vilotte, 1998) forward modeling of time domain three component waveforms. SEMum exhibits stronger amplitudes of heterogeneity in the upper 200km of the mantle compared to previous global models - particularly with respect to low-velocity anomalies. To make SEM-based waveform inversion tractable at global scales, SEMum was developed using: (1) a version of SEM coupled to 1D mode computation in the earth's core (C-SEM, Capdeville et al., 2003); (2) asymptotic normal-mode sensitivity kernels, incorporating multiple forward scattering and finite-frequency effects in the great-circle plane (NACT: Li and Romanowicz, 1995); and (3) a smooth anisotropic crustal layer of uniform 60km thickness, designed to match global surface-wave dispersion while reducing the cost of time integration in the SEM. The use of asymptotic kernels reduced the number of SEM computations considerably (≥ 3x) relative to purely numerical approaches (e.g. Tarantola, 1984), while remaining sufficiently accurate at the periods of interest (down to 60s). However, while the choice of a 60km crustal-layer thickness is justifiable in the continents, it can complicate interpretation of shallow oceanic upper-mantle structure. We here present an update to the SEMum model, designed primarily to address these concerns. The resulting model, SEMum2, was derived using a crustal layer that again fits global surface-wave dispersion, but with a more geologically consistent laterally varying thickness: approximately honoring Crust2.0 (Bassin, et al., 2000) Moho depth in the continents, while saturating at 30km in the oceans. We demonstrate that this approach does not bias our upper mantle model, which is constrained not only by fundamental mode surface waves, but also by overtone waveforms. We have also improved our data-selection and assimilation scheme, more readily allowing for additional and higher-quality data to be incorporated into our inversion as the model improves. Further, we have been able to refine the parameterization of the isotropic component of our model, previously limited by our ability to solve the large dense linear system that governs model updates (Tarantola and Valette, 1982). The construction of SEMum2 involved 3 additional inversion iterations away from SEMum. Overall, the combined effect of these improvements confirms and validates the general structure of the original SEMum. Model amplitudes remain an impressive feature in SEMum2, wherein peak-to-peak variation in VS can exceed 15% in close lateral juxtaposition. Further, many intriguing structures present in SEMum are now imaged with improved resolution in the updated model. In particular, the geographic extents of the anomalous oceanic cluster identified by Lekic and Romanowicz (2011b) are consistent with our findings and now allow us to further identify alternating bands of lower and higher velocities in the 200-300km depth range beneath the Pacific basin, with a characteristic spacing of ˜2000km normal to absolute plate motion. Possible dynamic interpretation of these and other features in the ocean basins is explored in a companion presentation (Romanowicz et al., this meeting).

Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models

PubMed Central

2011-01-01

Background Design of newly engineered microbial strains for biotechnological purposes would greatly benefit from the development of realistic mathematical models for the processes to be optimized. Such models can then be analyzed and, with the development and application of appropriate optimization techniques, one could identify the modifications that need to be made to the organism in order to achieve the desired biotechnological goal. As appropriate models to perform such an analysis are necessarily non-linear and typically non-convex, finding their global optimum is a challenging task. Canonical modeling techniques, such as Generalized Mass Action (GMA) models based on the power-law formalism, offer a possible solution to this problem because they have a mathematical structure that enables the development of specific algorithms for global optimization. Results Based on the GMA canonical representation, we have developed in previous works a highly efficient optimization algorithm and a set of related strategies for understanding the evolution of adaptive responses in cellular metabolism. Here, we explore the possibility of recasting kinetic non-linear models into an equivalent GMA model, so that global optimization on the recast GMA model can be performed. With this technique, optimization is greatly facilitated and the results are transposable to the original non-linear problem. This procedure is straightforward for a particular class of non-linear models known as Saturable and Cooperative (SC) models that extend the power-law formalism to deal with saturation and cooperativity. Conclusions Our results show that recasting non-linear kinetic models into GMA models is indeed an appropriate strategy that helps overcoming some of the numerical difficulties that arise during the global optimization task. PMID:21867520

Factor Scores, Structure and Communality Coefficients: A Primer

ERIC Educational Resources Information Center

Odum, Mary

2011-01-01

(Purpose) The purpose of this paper is to present an easy-to-understand primer on three important concepts of factor analysis: Factor scores, structure coefficients, and communality coefficients. Given that statistical analyses are a part of a global general linear model (GLM), and utilize weights as an integral part of analyses (Thompson, 2006;…

A simple predictive model for the structure of the oceanic pycnocline

PubMed

Gnanadesikan

1999-03-26

A simple theory for the large-scale oceanic circulation is developed, relating pycnocline depth, Northern Hemisphere sinking, and low-latitude upwelling to pycnocline diffusivity and Southern Ocean winds and eddies. The results show that Southern Ocean processes help maintain the global ocean structure and that pycnocline diffusion controls low-latitude upwelling.

Management of a Single Species Fishery with Stage Structure

ERIC Educational Resources Information Center

Kar, T. K.; Pahari, U. K.; Chaudhuri, K. S.

2004-01-01

A dynamic model for a single species fishery with stage structure is proposed using taxation as a control instrument to protect the fish population from overexploitation. Criteria for local stability and global stability of the system are derived. The optimal tax policy is established by using Pontryagin's maximal principle. By numerical…

Three-level global resource allocation model for hiv control: A hierarchical decision system approach.

PubMed

Kassa, Semu Mitiku

2018-02-01

Funds from various global organizations, such as, The Global Fund, The World Bank, etc. are not directly distributed to the targeted risk groups. Especially in the so-called third-world-countries, the major part of the fund in HIV prevention programs comes from these global funding organizations. The allocations of these funds usually pass through several levels of decision making bodies that have their own specific parameters to control and specific objectives to achieve. However, these decisions are made mostly in a heuristic manner and this may lead to a non-optimal allocation of the scarce resources. In this paper, a hierarchical mathematical optimization model is proposed to solve such a problem. Combining existing epidemiological models with the kind of interventions being on practice, a 3-level hierarchical decision making model in optimally allocating such resources has been developed and analyzed. When the impact of antiretroviral therapy (ART) is included in the model, it has been shown that the objective function of the lower level decision making structure is a non-convex minimization problem in the allocation variables even if all the production functions for the intervention programs are assumed to be linear.

Global Sensitivity Analysis for Identifying Important Parameters of Nitrogen Nitrification and Denitrification under Model and Scenario Uncertainties

NASA Astrophysics Data System (ADS)

Ye, M.; Chen, Z.; Shi, L.; Zhu, Y.; Yang, J.

2017-12-01

Nitrogen reactive transport modeling is subject to uncertainty in model parameters, structures, and scenarios. While global sensitivity analysis is a vital tool for identifying the parameters important to nitrogen reactive transport, conventional global sensitivity analysis only considers parametric uncertainty. This may result in inaccurate selection of important parameters, because parameter importance may vary under different models and modeling scenarios. By using a recently developed variance-based global sensitivity analysis method, this paper identifies important parameters with simultaneous consideration of parametric uncertainty, model uncertainty, and scenario uncertainty. In a numerical example of nitrogen reactive transport modeling, a combination of three scenarios of soil temperature and two scenarios of soil moisture leads to a total of six scenarios. Four alternative models are used to evaluate reduction functions used for calculating actual rates of nitrification and denitrification. The model uncertainty is tangled with scenario uncertainty, as the reduction functions depend on soil temperature and moisture content. The results of sensitivity analysis show that parameter importance varies substantially between different models and modeling scenarios, which may lead to inaccurate selection of important parameters if model and scenario uncertainties are not considered. This problem is avoided by using the new method of sensitivity analysis in the context of model averaging and scenario averaging. The new method of sensitivity analysis can be applied to other problems of contaminant transport modeling when model uncertainty and/or scenario uncertainty are present.

Modeling of Local BEAM Structure for Evaluation of MMOD Impacts to Support Development of a Health Monitoring System

NASA Technical Reports Server (NTRS)

Lyle, Karen H.; Vassilakos, Gregory J.

2015-01-01

This report summarizes initial modeling of the local response of the Bigelow Expandable Activity Module (BEAM) to micrometeorite and orbital debris (MMOD) impacts using a structural, non-linear, transient dynamic finite element code. Complementary test results for a local BEAM structure are presented for both hammer and projectile impacts. Review of these data provided guidance for the transient dynamic model development. The local model is intended to support predictions using the global BEAM model, described in a companion report. Two types of local models were developed. One mimics the simplified Soft-Goods (fabric envelop) part of the BEAM NASTRAN model delivered by the project. The second investigates through-the-thickness modeling challenges for MMOD-type impacts. Both the testing and the analysis summaries contain lessons learned and areas for future efforts.

Composite Study Of Aerosol Long-Range Transport Events From East Asia And North America

NASA Astrophysics Data System (ADS)

Jiang, X.; Waliser, D. E.; Guan, B.; Xavier, P.; Petch, J.; Klingaman, N. P.; Woolnough, S.

2011-12-01

While the Madden-Julian Oscillation (MJO) exerts pronounced influences on global climate and weather systems, current general circulation models (GCMs) exhibit rather limited capability in representing this prominent tropical variability mode. Meanwhile, the fundamental physics of the MJO are still elusive. Given the central role of the diabatic heating for prevailing MJO theories and demands for reducing the model deficiencies in simulating the MJO, a global model inter-comparison project on diabatic processes and vertical heating structure associated with the MJO has been coordinated through a joint effort by the WCRP-WWRP/THORPEX YOTC MJO Task Force and GEWEX GASS Program. In this presentation, progress of this model inter-comparison project will be reported, with main focus on climate simulations from about 27 atmosphere-only and coupled GCMs. Vertical structures of heating and diabatic processes associated with the MJO based on multi-model simulations will be presented along with their reanalysis and satellite estimate counterparts. Key processes possibly responsible for a realistic simulation of the MJO, including moisture-convection interaction, gross moist stability, ocean coupling, and surface heat flux, will be discussed.

Development of Computer Models for the Assessment of Foreign Body Impact Events on Composite Structures

NASA Technical Reports Server (NTRS)

Bucinell, Ronald B.

1997-01-01

The objective of this project was to model the 5-3/4 inch pressure vessels used on the NASA RTOP program in an attempt to learn more about how impact damage forms and what are the residual effects of the resulting damage. A global-local finite element model was developed for the bottle and the states of stress in the bottles were determined down to the constituent level. The experimental data that was generated on the NASA RTOP program was not in a form that enabled the model developed under this grant to be correlated with the experimental data. As a result of this exercise it is recommended that an experimental program be designed using statistical design of experiment techniques to generate data that can be used to isolate the phenomenon that control the formation of impact damage. This data should include residual property determinations so that models for post impact structural integrity can be developed. It is also recommended that the global-local methodology be integrated directly into the finite element code. This will require considerable code development.

Adolescents and Music Media: Toward an Involvement-Mediational Model of Consumption and Self-Concept

ERIC Educational Resources Information Center

Kistler, Michelle; Rodgers, Kathleen Boyce; Power, Thomas; Austin, Erica Weintraub; Hill, Laura Griner

2010-01-01

Using social cognitive theory and structural regression modeling, we examined pathways between early adolescents' music media consumption, involvement with music media, and 3 domains of self-concept (physical appearance, romantic appeal, and global self-worth; N=124). A mediational model was supported for 2 domains of self-concept. Music media…

Global rates of mantle serpentinization and H2 release at oceanic transform faults

NASA Astrophysics Data System (ADS)

Ruepke, Lars; Hasenclever, Joerg

2017-04-01

The cycling of seawater through the ocean floor is the dominant mechanism of biogeochemical exchange between the solid earth and the global ocean. Crustal fluid flow appears to be typically associated with major seafloor structures, and oceanic transform faults (OTF) are one of the most striking yet poorly understood features of the global mid-ocean ridge systems. Fracture zones and transform faults have long been hypothesized to be sites of substantial biogeochemical exchange between the solid Earth and the global ocean. This is particularly interesting with regard to the ocean biome. Deep ocean ecosystems constitute 60% of it but their role in global ocean biogeochemical cycles is much overlooked. There is growing evidence that life is supported by chemosynthesis at hydrothermal vents but also in the crust, and therefore this may be a more abundant process than previously thought. In this context, the serpentine forming interaction between seawater and cold lithospheric mantle rocks is particularly interesting as it is also a mechanism of abiotic hydrogen and methane formation. Interestingly, a quantitative global assessment of mantle serpentinization at oceanic transform faults in the context of the biogeochemical exchange between the seafloor and the global ocean is still largely missing. Here we present the results of a set of 3-D thermo-mechanical model calculations that investigate mantle serpentinization at OTFs for the entire range of globally observed slip rates and fault lengths. These visco-plastic models predict the OTF thermal structure and the location of crustal-scale brittle deformation, which is a prerequisite for mantle serpentinization to occur. The results of these simulations are integrated with information on the global distribution of OTF lengths and slip rates yielding global estimates on mantle serpentinization and associated H2 release. We find that OTFs are potentially sites of intense crustal fluid flow and are in terms of H2 release almost as important as MOR-related serpentinization.

Ionospheric Simulation System for Satellite Observations and Global Assimilative Model Experiments - ISOGAME

NASA Technical Reports Server (NTRS)

Pi, Xiaoqing; Mannucci, Anthony J.; Verkhoglyadova, Olga; Stephens, Philip; Iijima, Bryron A.

2013-01-01

Modeling and imaging the Earth's ionosphere as well as understanding its structures, inhomogeneities, and disturbances is a key part of NASA's Heliophysics Directorate science roadmap. This invention provides a design tool for scientific missions focused on the ionosphere. It is a scientifically important and technologically challenging task to assess the impact of a new observation system quantitatively on our capability of imaging and modeling the ionosphere. This question is often raised whenever a new satellite system is proposed, a new type of data is emerging, or a new modeling technique is developed. The proposed constellation would be part of a new observation system with more low-Earth orbiters tracking more radio occultation signals broadcast by Global Navigation Satellite System (GNSS) than those offered by the current GPS and COSMIC observation system. A simulation system was developed to fulfill this task. The system is composed of a suite of software that combines the Global Assimilative Ionospheric Model (GAIM) including first-principles and empirical ionospheric models, a multiple- dipole geomagnetic field model, data assimilation modules, observation simulator, visualization software, and orbit design, simulation, and optimization software.

Parametric uncertainties in global model simulations of black carbon column mass concentration

NASA Astrophysics Data System (ADS)

Pearce, Hana; Lee, Lindsay; Reddington, Carly; Carslaw, Ken; Mann, Graham

2016-04-01

Previous studies have deduced that the annual mean direct radiative forcing from black carbon (BC) aerosol may regionally be up to 5 W m-2 larger than expected due to underestimation of global atmospheric BC absorption in models. We have identified the magnitude and important sources of parametric uncertainty in simulations of BC column mass concentration from a global aerosol microphysics model (GLOMAP-Mode). A variance-based uncertainty analysis of 28 parameters has been performed, based on statistical emulators trained on model output from GLOMAP-Mode. This is the largest number of uncertain model parameters to be considered in a BC uncertainty analysis to date and covers primary aerosol emissions, microphysical processes and structural parameters related to the aerosol size distribution. We will present several recommendations for further research to improve the fidelity of simulated BC. In brief, we find that the standard deviation around the simulated mean annual BC column mass concentration varies globally between 2.5 x 10-9 g cm-2 in remote marine regions and 1.25 x 10-6 g cm-2 near emission sources due to parameter uncertainty Between 60 and 90% of the variance over source regions is due to uncertainty associated with primary BC emission fluxes, including biomass burning, fossil fuel and biofuel emissions. While the contributions to BC column uncertainty from microphysical processes, for example those related to dry and wet deposition, are increased over remote regions, we find that emissions still make an important contribution in these areas. It is likely, however, that the importance of structural model error, i.e. differences between models, is greater than parametric uncertainty. We have extended our analysis to emulate vertical BC profiles at several locations in the mid-Pacific Ocean and identify the parameters contributing to uncertainty in the vertical distribution of black carbon at these locations. We will present preliminary comparisons of emulated BC vertical profiles from the AeroCom multi-model ensemble and Hiaper Pole-to-Pole (HIPPO) observations.

Global Organization of a Positive-strand RNA Virus Genome

PubMed Central

Wu, Baodong; Grigull, Jörg; Ore, Moriam O.; Morin, Sylvie; White, K. Andrew

2013-01-01

The genomes of plus-strand RNA viruses contain many regulatory sequences and structures that direct different viral processes. The traditional view of these RNA elements are as local structures present in non-coding regions. However, this view is changing due to the discovery of regulatory elements in coding regions and functional long-range intra-genomic base pairing interactions. The ∼4.8 kb long RNA genome of the tombusvirus tomato bushy stunt virus (TBSV) contains these types of structural features, including six different functional long-distance interactions. We hypothesized that to achieve these multiple interactions this viral genome must utilize a large-scale organizational strategy and, accordingly, we sought to assess the global conformation of the entire TBSV genome. Atomic force micrographs of the genome indicated a mostly condensed structure composed of interconnected protrusions extending from a central hub. This configuration was consistent with the genomic secondary structure model generated using high-throughput selective 2′-hydroxyl acylation analysed by primer extension (i.e. SHAPE), which predicted different sized RNA domains originating from a central region. Known RNA elements were identified in both domain and inter-domain regions, and novel structural features were predicted and functionally confirmed. Interestingly, only two of the six long-range interactions known to form were present in the structural model. However, for those interactions that did not form, complementary partner sequences were positioned relatively close to each other in the structure, suggesting that the secondary structure level of viral genome structure could provide a basic scaffold for the formation of different long-range interactions. The higher-order structural model for the TBSV RNA genome provides a snapshot of the complex framework that allows multiple functional components to operate in concert within a confined context. PMID:23717202

On the use of tower-flux measurements to assess the performance of global ecosystem models

NASA Astrophysics Data System (ADS)

El Maayar, M.; Kucharik, C.

2003-04-01

Global ecosystem models are important tools for the study of biospheric processes and their responses to environmental changes. Such models typically translate knowledge, gained from local observations, into estimates of regional or even global outcomes of ecosystem processes. A typical test of ecosystem models consists of comparing their output against tower-flux measurements of land surface-atmosphere exchange of heat and mass. To perform such tests, models are typically run using detailed information on soil properties (texture, carbon content,...) and vegetation structure observed at the experimental site (e.g., vegetation height, vegetation phenology, leaf photosynthetic characteristics,...). In global simulations, however, earth's vegetation is typically represented by a limited number of plant functional types (PFT; group of plant species that have similar physiological and ecological characteristics). For each PFT (e.g., temperate broadleaf trees, boreal conifer evergreen trees,...), which can cover a very large area, a set of typical physiological and physical parameters are assigned. Thus, a legitimate question arises: How does the performance of a global ecosystem model run using detailed site-specific parameters compare with the performance of a less detailed global version where generic parameters are attributed to a group of vegetation species forming a PFT? To answer this question, we used a multiyear dataset, measured at two forest sites with contrasting environments, to compare seasonal and interannual variability of surface-atmosphere exchange of water and carbon predicted by the Integrated BIosphere Simulator-Dynamic Global Vegetation Model. Two types of simulations were, thus, performed: a) Detailed runs: observed vegetation characteristics (leaf area index, vegetation height,...) and soil carbon content, in addition to climate and soil type, are specified for model run; and b) Generic runs: when only observed climates and soil types at the measurement sites are used to run the model. The generic runs were performed for the number of years equal to the current age of the forests, initialized with no vegetation and a soil carbon density equal to zero.

Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling.

PubMed

Jo, Sunhwan; Lee, Hui Sun; Skolnick, Jeffrey; Im, Wonpil

2013-01-01

Understanding glycan structure and dynamics is central to understanding protein-carbohydrate recognition and its role in protein-protein interactions. Given the difficulties in obtaining the glycan's crystal structure in glycoconjugates due to its flexibility and heterogeneity, computational modeling could play an important role in providing glycosylated protein structure models. To address if glycan structures available in the PDB can be used as templates or fragments for glycan modeling, we present a survey of the N-glycan structures of 35 different sequences in the PDB. Our statistical analysis shows that the N-glycan structures found on homologous glycoproteins are significantly conserved compared to the random background, suggesting that N-glycan chains can be confidently modeled with template glycan structures whose parent glycoproteins share sequence similarity. On the other hand, N-glycan structures found on non-homologous glycoproteins do not show significant global structural similarity. Nonetheless, the internal substructures of these N-glycans, particularly, the substructures that are closer to the protein, show significantly similar structures, suggesting that such substructures can be used as fragments in glycan modeling. Increased interactions with protein might be responsible for the restricted conformational space of N-glycan chains. Our results suggest that structure prediction/modeling of N-glycans of glycoconjugates using structure database could be effective and different modeling approaches would be needed depending on the availability of template structures.

Restricted N-glycan Conformational Space in the PDB and Its Implication in Glycan Structure Modeling

PubMed Central

Jo, Sunhwan; Lee, Hui Sun; Skolnick, Jeffrey; Im, Wonpil

2013-01-01

Understanding glycan structure and dynamics is central to understanding protein-carbohydrate recognition and its role in protein-protein interactions. Given the difficulties in obtaining the glycan's crystal structure in glycoconjugates due to its flexibility and heterogeneity, computational modeling could play an important role in providing glycosylated protein structure models. To address if glycan structures available in the PDB can be used as templates or fragments for glycan modeling, we present a survey of the N-glycan structures of 35 different sequences in the PDB. Our statistical analysis shows that the N-glycan structures found on homologous glycoproteins are significantly conserved compared to the random background, suggesting that N-glycan chains can be confidently modeled with template glycan structures whose parent glycoproteins share sequence similarity. On the other hand, N-glycan structures found on non-homologous glycoproteins do not show significant global structural similarity. Nonetheless, the internal substructures of these N-glycans, particularly, the substructures that are closer to the protein, show significantly similar structures, suggesting that such substructures can be used as fragments in glycan modeling. Increased interactions with protein might be responsible for the restricted conformational space of N-glycan chains. Our results suggest that structure prediction/modeling of N-glycans of glycoconjugates using structure database could be effective and different modeling approaches would be needed depending on the availability of template structures. PMID:23516343

Layerwise mechanics and finite element for the dynamic analysis of piezoelectric composite plates

NASA Technical Reports Server (NTRS)

Saravanos, Dimitris A.; Heyliger, Paul R.; Hopkins, Dale A.

1996-01-01

Laminate and structural mechanics for the analysis of laminated composite plate structures with piezoelectric actuators and sensors are presented. The theories implement layerwise representations of displacements and electric potential, and can model both the global and local electromechanical response of smart composite laminates. Finite-element formulations are developed for the quasi-static and dynamic analysis of smart composite structures containing piezoelectric layers. Comparisons with an exact solution illustrate the accuracy, robustness and capability of the developed mechanics to capture the global and local response of thin and/or thick laminated piezoelectric plates. Additional correlations and numerical applications demonstrate the unique capabilities of the mechanics in analyzing the static and free-vibration response of composite plates with distributed piezoelectric actuators and sensors.

Do oil shocks predict economic policy uncertainty?

NASA Astrophysics Data System (ADS)

Rehman, Mobeen Ur

2018-05-01

Oil price fluctuations have influential role in global economic policies for developed as well as emerging countries. I investigate the role of international oil prices disintegrated into structural (i) oil supply shock, (ii) aggregate demand shock and (iii) oil market specific demand shocks, based on the work of Kilian (2009) using structural VAR framework on economic policies uncertainty of sampled markets. Economic policy uncertainty, due to its non-linear behavior is modeled in a regime switching framework with disintegrated structural oil shocks. Our results highlight that Indian, Spain and Japanese economic policy uncertainty responds to the global oil price shocks, however aggregate demand shocks fail to induce any change. Oil specific demand shocks are significant only for China and India in high volatility state.

Analysis and calculation of macrosegregation in a casting ingot. MPS solidification model. Volume 2: Software documentation

NASA Technical Reports Server (NTRS)

Maples, A. L.

1980-01-01

The software developed for the solidification model is presented. A link between the calculations and the FORTRAN code is provided, primarily in the form of global flow diagrams and data structures. A complete listing of the solidification code is given.

Undergraduates in a Sustainability Semester: Models of Social Change for Sustainability

ERIC Educational Resources Information Center

Miller, Hannah K.

2016-01-01

Interdisciplinary sustainability programs are emerging globally, but little is known about the learning in these educational contexts. This qualitative case study examined undergraduates' experience in a Sustainability Semester, using the agency/structure dialectic as a theoretical lens. Before the semester, students' models of change for…

Nonlinear analyses and failure patterns of typical masonry school buildings in the epicentral zone of the 2016 Italian earthquakes

NASA Astrophysics Data System (ADS)

Clementi, Cristhian; Clementi, Francesco; Lenci, Stefano

2017-11-01

The paper discusses the behavior of typical masonry school buildings in the center of Italy built at the end of 1950s without any seismic guidelines. These structures have faced the recent Italian earthquakes in 2016 without diffuse damages. Global numerical models of the building have been built and masonry material has been simulated as nonlinear. Sensitivity analyses are done to evaluate the reliability of the structural models.

Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC.

PubMed

Contreras-Torres, Ernesto

2018-06-02

In this study, I introduce novel global and local 0D-protein descriptors based on a statistical quantity named Total Sum of Squares (TSS). This quantity represents the sum of the squares differences of amino acid properties from the arithmetic mean property. As an extension, the amino acid-types and amino acid-groups formalisms are used for describing zones of interest in proteins. To assess the effectiveness of the proposed descriptors, a Nearest Neighbor model for predicting the major four protein structural classes was built. This model has a success rate of 98.53% on the jackknife cross-validation test; this performance being superior to other reported methods despite the simplicity of the predictor. Additionally, this predictor has an average success rate of 98.35% in different cross-validation tests performed. A value of 0.98 for the Kappa statistic clearly discriminates this model from a random predictor. The results obtained by the Nearest Neighbor model demonstrated the ability of the proposed descriptors not only to reflect relevant biochemical information related to the structural classes of proteins but also to allow appropriate interpretability. It can thus be expected that the current method may play a supplementary role to other existing approaches for protein structural class prediction and other protein attributes. Copyright © 2018 Elsevier Ltd. All rights reserved.

3D Protein structure prediction with genetic tabu search algorithm

PubMed Central

2010-01-01

Background Protein structure prediction (PSP) has important applications in different fields, such as drug design, disease prediction, and so on. In protein structure prediction, there are two important issues. The first one is the design of the structure model and the second one is the design of the optimization technology. Because of the complexity of the realistic protein structure, the structure model adopted in this paper is a simplified model, which is called off-lattice AB model. After the structure model is assumed, optimization technology is needed for searching the best conformation of a protein sequence based on the assumed structure model. However, PSP is an NP-hard problem even if the simplest model is assumed. Thus, many algorithms have been developed to solve the global optimization problem. In this paper, a hybrid algorithm, which combines genetic algorithm (GA) and tabu search (TS) algorithm, is developed to complete this task. Results In order to develop an efficient optimization algorithm, several improved strategies are developed for the proposed genetic tabu search algorithm. The combined use of these strategies can improve the efficiency of the algorithm. In these strategies, tabu search introduced into the crossover and mutation operators can improve the local search capability, the adoption of variable population size strategy can maintain the diversity of the population, and the ranking selection strategy can improve the possibility of an individual with low energy value entering into next generation. Experiments are performed with Fibonacci sequences and real protein sequences. Experimental results show that the lowest energy obtained by the proposed GATS algorithm is lower than that obtained by previous methods. Conclusions The hybrid algorithm has the advantages from both genetic algorithm and tabu search algorithm. It makes use of the advantage of multiple search points in genetic algorithm, and can overcome poor hill-climbing capability in the conventional genetic algorithm by using the flexible memory functions of TS. Compared with some previous algorithms, GATS algorithm has better performance in global optimization and can predict 3D protein structure more effectively. PMID:20522256

Characterizing Woody Vegetation Spectral and Structural Parameters with a 3-D Scene Model

NASA Astrophysics Data System (ADS)

Qin, W.; Yang, L.

2004-05-01

Quantification of structural and biophysical parameters of woody vegetation is of great significance in understanding vegetation condition, dynamics and functionality. Such information over a landscape scale is crucial for global and regional land cover characterization, global carbon-cycle research, forest resource inventories, and fire fuel estimation. While great efforts and progress have been made in mapping general land cover types over large area, at present, the ability to quantify regional woody vegetation structural and biophysical parameters is limited. One approach to address this research issue is through an integration of physically based 3-D scene model with multiangle and multispectral remote sensing data and in-situ measurements. The first step of this work is to model woody vegetation structure and its radiation regime using a physically based 3-D scene model and field data, before a robust operational algorithm can be developed for retrieval of important woody vegetation structural/biophysical parameters. In this study, we use an advanced 3-D scene model recently developed by Qin and Gerstl (2000), based on L-systems and radiosity theories. This 3-D scene model has been successfully applied to semi-arid shrubland to study structure and radiation regime at a regional scale. We apply this 3-D scene model to a more complicated and heterogeneous forest environment dominated by deciduous and coniferous trees. The data used in this study are from a field campaign conducted by NASA in a portion of the Superior National Forest (SNF) near Ely, Minnesota during the summers of 1983 and 1984, and supplement data collected during our revisit to the same area of SNF in summer of 2003. The model is first validated with reflectance measurements at different scales (ground observations, helicopter, aircraft, and satellite). Then its ability to characterize the structural and spectral parameters of the forest scene is evaluated. Based on the results from this study and the current multi-spectral and multi-angular satellite data (MODIS, MISR), a robust retrieval system to estimate woody vegetation structural/biophysical parameters is proposed.

Improved Hydrology over Peatlands in a Global Land Modeling System

NASA Technical Reports Server (NTRS)

Bechtold, M.; Delannoy, G.; Reichle, R.; Koster, R.; Mahanama, S.; Roose, Dirk

2018-01-01

Peatlands of the Northern Hemisphere represent an important carbon pool that mainly accumulated since the last ice age under permanently wet conditions in specific geological and climatic settings. The carbon balance of peatlands is closely coupled to water table dynamics. Consequently, the future carbon balance over peatlands is strongly dependent on how hydrology in peatlands will react to changing boundary conditions, e.g. due to climate change or regional water level drawdown of connected aquifers or streams. Global land surface modeling over organic-rich regions can provide valuable global-scale insights on where and how peatlands are in transition due to changing boundary conditions. However, the current global land surface models are not able to reproduce typical hydrological dynamics in peatlands well. We implemented specific structural and parametric changes to account for key hydrological characteristics of peatlands into NASA's GEOS-5 Catchment Land Surface Model (CLSM, Koster et al. 2000). The main modifications pertain to the modeling of partial inundation, and the definition of peatland-specific runoff and evapotranspiration schemes. We ran a set of simulations on a high performance cluster using different CLSM configurations and validated the results with a newly compiled global in-situ dataset of water table depths in peatlands. The results demonstrate that an update of soil hydraulic properties for peat soils alone does not improve the performance of CLSM over peatlands. However, structural model changes for peatlands are able to improve the skill metrics for water table depth. The validation results for the water table depth indicate a reduction of the bias from 2.5 to 0.2 m, and an improvement of the temporal correlation coefficient from 0.5 to 0.65, and from 0.4 to 0.55 for the anomalies. Our validation data set includes both bogs (rain-fed) and fens (ground and/or surface water influence) and reveals that the metrics improved less for fens. In addition, a comparison of evapotranspiration and soil moisture estimates over peatlands will be presented, albeit only with limited ground-based validation data. We will discuss strengths and weaknesses of the new model by focusing on time series of specific validation sites.

Global Symmetries of Six Dimensional Superconformal Field Theories

NASA Astrophysics Data System (ADS)

Merkx, Peter R.

In this work we investigate the global symmetries of six-dimensional superconformal field theories (6D SCFTs) via their description in F-theory. We provide computer algebra system routines determining global symmetry maxima for all known 6D SCFTs while tracking the singularity types of the associated elliptic fibrations. We tabulate these bounds for many CFTs including every 0-link based theory. The approach we take provides explicit tracking of geometric information which has remained implicit in the classifications of 6D SCFTs to date. We derive a variety of new geometric restrictions on collections of singularity collisions in elliptically fibered Calabi-Yau varieties and collect data from local model analyses of these collisions. The resulting restrictions are sufficient to match the known gauge enhancement structure constraints for all 6D SCFTs without appeal to anomaly cancellation and enable our global symmetry computations for F-theory SCFT models to proceed similarly.

Structural Mapping of Paterae and Mountains on Io: Implications for Crustal Stresses and Feature Evolution

NASA Astrophysics Data System (ADS)

Ahern, A.; Radebaugh, J.; Christiansen, E. H.; Harris, R. A.

2015-12-01

Paterae and mountains are some of the most distinguishing and well-distributed surface features on Io, and they reveal the role of tectonism in Io's crust. Paterae, similar to calderas, are volcano-tectonic collapse features that often have straight margins. Io's mountains are some of the highest in the solar system and contain linear features that reveal crustal stresses. Paterae and mountains are often found adjacent to one another, suggesting possible genetic relationships. We have produced twelve detailed regional structural maps from high-resolution images of relevant features, where available, as well as a global structural map from the Io Global Color Mosaic. The regional structural maps identify features such as fractures, lineations, folds, faults, and mass wasting scarps, which are then interpreted in the context of global and regional stress regimes. A total of 1048 structural lineations have been identified globally. Preliminary analyses of major thrust and normal fault orientations are dominantly 90° offset from each other, suggesting the maximum contractional stresses leading to large mountain formation are not a direct result of tidal extension. Rather, these results corroborate the model of volcanic loading of the crust and global shortening, leading to thrust faulting and uplift of coherent crustal blocks. Several paterae, such as Hi'iaka and Tohil, are found adjacent to mountains inside extensional basins where lava has migrated up normal faults to erupt onto patera floors. Over time, mass wasting and volcanic resurfacing can change mountains from young, steep, and angular peaks to older, gentler, and more rounded hills. Mass wasting scarps make up 53% of all features identified. The structural maps highlight the significant effect of mass wasting on Io's surface, the evolution of mountains through time, the role of tectonics in the formation of paterae, and the formation of mountains through global contraction due to volcanism.

The effect of road network patterns on pedestrian safety: A zone-based Bayesian spatial modeling approach.

PubMed

Guo, Qiang; Xu, Pengpeng; Pei, Xin; Wong, S C; Yao, Danya

2017-02-01

Pedestrian safety is increasingly recognized as a major public health concern. Extensive safety studies have been conducted to examine the influence of multiple variables on the occurrence of pedestrian-vehicle crashes. However, the explicit relationship between pedestrian safety and road network characteristics remains unknown. This study particularly focused on the role of different road network patterns on the occurrence of crashes involving pedestrians. A global integration index via space syntax was introduced to quantify the topological structures of road networks. The Bayesian Poisson-lognormal (PLN) models with conditional autoregressive (CAR) prior were then developed via three different proximity structures: contiguity, geometry-centroid distance, and road network connectivity. The models were also compared with the PLN counterpart without spatial correlation effects. The analysis was based on a comprehensive crash dataset from 131 selected traffic analysis zones in Hong Kong. The results indicated that higher global integration was associated with more pedestrian-vehicle crashes; the irregular pattern network was proved to be safest in terms of pedestrian crash occurrences, whereas the grid pattern was the least safe; the CAR model with a neighborhood structure based on road network connectivity was found to outperform in model goodness-of-fit, implying the importance of accurately accounting for spatial correlation when modeling spatially aggregated crash data. Copyright © 2016 Elsevier Ltd. All rights reserved.

Spatiotemporal correlation structure of the Earth's surface temperature

NASA Astrophysics Data System (ADS)

Fredriksen, Hege-Beate; Rypdal, Kristoffer; Rypdal, Martin

2015-04-01

We investigate the spatiotemporal temperature variability for several gridded instrumental and climate model data sets. The temporal variability is analysed by estimating the power spectral density and studying the differences between local and global temperatures, land and sea, and among local temperature records at different locations. The spatiotemporal correlation structure is analysed through cross-spectra that allow us to compute frequency-dependent spatial autocorrelation functions (ACFs). Our results are then compared to theoretical spectra and frequency-dependent spatial ACFs derived from a fractional stochastic-diffusive energy balance model (FEBM). From the FEBM we expect both local and global temperatures to have a long-range persistent temporal behaviour, and the spectral exponent (β) is expected to increase by a factor of two when going from local to global scales. Our comparison of the average local spectrum and the global spectrum shows good agreement with this model, although the FEBM has so far only been studied for a pure land planet and a pure ocean planet, respectively, with no seasonal forcing. Hence it cannot capture the substantial variability among the local spectra, in particular between the spectra for land and sea, and for equatorial and non-equatorial temperatures. Both models and observation data show that land temperatures in general have a low persistence, while sea surface temperatures show a higher, and also more variable degree of persistence. Near the equator the spectra deviate from the power-law shape expected from the FEBM. Instead we observe large variability at time scales of a few years due to ENSO, and a flat spectrum at longer time scales, making the spectrum more reminiscent of that of a red noise process. From the frequency-dependent spatial ACFs we observe that the spatial correlation length increases with increasing time scale, which is also consistent with the FEBM. One consequence of this is that longer-lasting structures must also be wider in space. The spatial correlation length is also observed to be longer for land than for sea. The climate model simulations studied are mainly CMIP5 control runs of length 500-1000 yr. On time scales up to several centuries we do not observe that the difference between the local and global spectral exponents vanish. This also follows from the FEBM and shows that the dynamics is spatiotemporal (not just temporal) even on these time scales.

Gravitational Lenses and the Structure and Evolution of Galaxies

NASA Technical Reports Server (NTRS)

Kochanek, Christopher

2003-01-01

The grant has supported the completion of 16 papers and 4 conference proceedings to date. During the first year of the project we completed five papers, each of which represents a new direction in the theory and interpretation of gravitational lenses. In the first paper, "The Importance of Einstein Rings", we developed the first theory for the formation and structure of the Einstein rings formed by lensing extended sources like the host galaxies of quasar and radio sources. We applied the theory to three lenses with lensed host galaxies. For the time delay lens PG 1115+080 we found that the structure of the Einstein ring ruled out models of the gravitational potential which permitted a large Hubble constant (70 km/s Mpc). In the second paper, :Cusped Mass Models Of Gravitational Lenses", we introduced a new class of lens models where the central density is characterized by a cusp ( rho proportional to tau(sup -gamma), 1 less than gamma less than 2) as in most modern models and theories of galaxies rather than a finite core radius. In the third paper, "Global Probes of the Impact of Baryons on Dark Matter Halos", we made the first globally consistent models for the separation distribution of gravitational lenses including both galaxy and cluster lenses. We show that the key physics for the origin of the sharp separation cutoff in the separation distribution near 3 arc sec is the effect of the cooling baryons in galaxies on the density structure of the system.

Geocoronal Imaging from the Deep Space Gateway

NASA Astrophysics Data System (ADS)

Waldrop, L.; Immel, T.; Clarke, J.; Fillingim, M.; Rider, K.; Qin, J.; Bhattacharyya, D.; Doe, R.

2018-02-01

UV imaging of geocoronal emission at high spatial and temporal resolution from deep space would provide crucial new constraints on global exospheric structure and dynamics, significantly advancing models of space weather and atmospheric escape.

Global remote sensing of water-chlorophyll ratio in terrestrial plant leaves.

PubMed

Kushida, Keiji

2012-10-01

I evaluated the use of global remote sensing techniques for estimating plant leaf chlorophyll a + b (C(ab); μg cm(-2)) and water (C(w); mg cm(-2)) concentrations as well as the ratio of C(w)/C(ab) with the PROSAIL model under possible distributions for leaf and soil spectra, leaf area index (LAI), canopy geometric structure, and leaf size. First, I estimated LAI from the normalized difference vegetation index. I found that, at LAI values <2, C(ab), C(w), and C(w)/C(ab) could not be reliably estimated. At LAI values >2, C(ab) and C(w) could be estimated for only restricted ranges of the canopy structure; however, the ratio of C(w)/C(ab) could be reliably estimated for a variety of possible canopy structures with coefficients of determination (R(2)) ranging from 0.56 to 0.90. The remote estimation of the C(w)/C(ab) ratio from satellites offers information on plant condition at a global scale.

Curvature, metric and parametrization of origami tessellations: theory and application to the eggbox pattern.

PubMed

Nassar, H; Lebée, A; Monasse, L

2017-01-01

Origami tessellations are particular textured morphing shell structures. Their unique folding and unfolding mechanisms on a local scale aggregate and bring on large changes in shape, curvature and elongation on a global scale. The existence of these global deformation modes allows for origami tessellations to fit non-trivial surfaces thus inspiring applications across a wide range of domains including structural engineering, architectural design and aerospace engineering. The present paper suggests a homogenization-type two-scale asymptotic method which, combined with standard tools from differential geometry of surfaces, yields a macroscopic continuous characterization of the global deformation modes of origami tessellations and other similar periodic pin-jointed trusses. The outcome of the method is a set of nonlinear differential equations governing the parametrization, metric and curvature of surfaces that the initially discrete structure can fit. The theory is presented through a case study of a fairly generic example: the eggbox pattern. The proposed continuous model predicts correctly the existence of various fittings that are subsequently constructed and illustrated.

Curvature, metric and parametrization of origami tessellations: theory and application to the eggbox pattern

NASA Astrophysics Data System (ADS)

Nassar, H.; Lebée, A.; Monasse, L.

2017-01-01

Origami tessellations are particular textured morphing shell structures. Their unique folding and unfolding mechanisms on a local scale aggregate and bring on large changes in shape, curvature and elongation on a global scale. The existence of these global deformation modes allows for origami tessellations to fit non-trivial surfaces thus inspiring applications across a wide range of domains including structural engineering, architectural design and aerospace engineering. The present paper suggests a homogenization-type two-scale asymptotic method which, combined with standard tools from differential geometry of surfaces, yields a macroscopic continuous characterization of the global deformation modes of origami tessellations and other similar periodic pin-jointed trusses. The outcome of the method is a set of nonlinear differential equations governing the parametrization, metric and curvature of surfaces that the initially discrete structure can fit. The theory is presented through a case study of a fairly generic example: the eggbox pattern. The proposed continuous model predicts correctly the existence of various fittings that are subsequently constructed and illustrated.

"Globalized public health." A transdisciplinary comprehensive framework for analyzing contemporary globalization's influences on the field of public health.

PubMed

Lapaige, Véronique

2009-01-01

The current phase of globalization represents a "double-edged sword" challenge facing public health practitioners and health policy makers. The first "edge" throws light on two constructs in the field of public health: global health (formerly international health) and globalized public health. The second "edge" is that of global governance, and raises the question, "how can we construct public health regulations that adequately respond to both global and local complexities related to the two constructs mentioned earlier (global health and globalized public health)?" The two constructs call for the development of norms that will assure sustained population-wide health improvement and these two constructs have their own conceptual tools and theoretical models that permit a better understanding of them. In this paper, we introduce the "globalized public health" construct and we present an interactive comprehensive framework for critically analyzing contemporary globalization's influences on the field of public health. "Globalized public health", simultaneously a theoretical model and a conceptual framework, concerns the transformation of the field of public health in the sociohistorical context of globalization. The model is the fruit of an original theoretical research study conducted from 2005 to 2008 ("contextualized research," Gibbons' Mode II of knowledge production), founded on a QUAL-quant sequential mixed-method design. This research also reflects our political and ideological position, fuelled with aspirations of social democracy and cosmopolitical values. It is profoundly anchored in the pragmatic approach to globalization, looking to "reconcile" the market and equity. The model offers several features to users: (1) it is transdisciplinary; (2) it is interactive (CD-ROM); (3) it is nonlinear (nonlinear interrelations between the contextual globalization and the field of public health); (4) it is synchronic/diachronic (a double-crossed perspective permits analysis of global social change, the emergence of global agency and the transmutation of the field of public health, in the full complexity of their nonlinear interaction); (5) it offers five characteristics as an auto-eco-organized system of social interactions, or dynamic, nonlinear sociohistorical system. The model features a visual interface (five interrelated figures), a structure of 30 "integrator concepts" that integrates 114 other element-parts via 1,300 hypertext links. The model is both a knowledge translation tool and an interactive heuristic guide designed for practitioners and researchers in public health/community health/population health, as well as for decision-makers at all levels.

Structure and conformational dynamics of scaffolded DNA origami nanoparticles

DTIC Science & Technology

2017-05-08

all-atom molecular dynamics and coarse-grained finite element modeling to DX-based nanoparticles to elucidate their fine-scale and global conforma... finite element (FE) modeling approach CanDo is also routinely used to predict the 3D equilibrium conformation of programmed DNA assemblies based on a...model with both experimental cryo-electron microscopy (cryo-EM) data and all-atom modeling. MATERIALS AND METHODS Lattice-free finite element model

Distributed Prognostics based on Structural Model Decomposition

NASA Technical Reports Server (NTRS)

Daigle, Matthew J.; Bregon, Anibal; Roychoudhury, I.

2014-01-01

Within systems health management, prognostics focuses on predicting the remaining useful life of a system. In the model-based prognostics paradigm, physics-based models are constructed that describe the operation of a system and how it fails. Such approaches consist of an estimation phase, in which the health state of the system is first identified, and a prediction phase, in which the health state is projected forward in time to determine the end of life. Centralized solutions to these problems are often computationally expensive, do not scale well as the size of the system grows, and introduce a single point of failure. In this paper, we propose a novel distributed model-based prognostics scheme that formally describes how to decompose both the estimation and prediction problems into independent local subproblems whose solutions may be easily composed into a global solution. The decomposition of the prognostics problem is achieved through structural decomposition of the underlying models. The decomposition algorithm creates from the global system model a set of local submodels suitable for prognostics. Independent local estimation and prediction problems are formed based on these local submodels, resulting in a scalable distributed prognostics approach that allows the local subproblems to be solved in parallel, thus offering increases in computational efficiency. Using a centrifugal pump as a case study, we perform a number of simulation-based experiments to demonstrate the distributed approach, compare the performance with a centralized approach, and establish its scalability. Index Terms-model-based prognostics, distributed prognostics, structural model decomposition ABBREVIATIONS

Conceptional Considerations to Energy Balance and Global Warming Potential of Soil Bioengineering Structures

NASA Astrophysics Data System (ADS)

von der Thannen, Magdalena; Paratscha, Roman; Smutny, Roman; Lampalzer, Thomas; Strauss, Alfred; Rauch, Hans Peter

2016-04-01

Nowadays there is a high demand on engineering solutions considering not only technical aspects but also ecological and aesthetic values. In this context soil bioengineering techniques are often used as standalone solutions or in combination with conventional engineering structures. It is a construction technique that uses biological components for hydraulic and civil engineering solutions. In general it pursues the same objectives as conventional civil engineering structures. Currently the used assessment methods for soil bioengineering structures are referencing technically, ecologically and socio-economically. In a modern engineering approach additionally, environmental impacts and potential added values should be considered. The research project E-Protect aims at developing Environmental Life Cycle Assessment (LCA) models for this special field of alpine protective constructions. Both, the Cumulative Energy Demand (CED) and the Global Warming Potential (GWP) should be considered in an Environmental LCA over the whole life cycle of an engineering structure. The life cycle itself can be divided into three phases: the construction phase, the use phase and the end of life phase. The paper represents a concept to apply an Environmental LCA model for soil bioengineering structures. Beside the construction phase of these structures particular attention will be given to the use phase. It is not only important in terms of engineering effects but also plays an important role for positive carbon footprint due to the growing plants of soil bioengineering structures in contrast to conventional structures. Innovative Environmental LCA models will be applied to soil bioengineering structures which provide a new transparency for the responsible planners and stakeholders, by pointing out the total consumption of resources in all construction phases and components.

Global Electromagnetic Imaging of Lithosphere and Upper Mantle from Space and Ground. Recent Results and Challenges

NASA Astrophysics Data System (ADS)

Kuvshinov, A. V.

2016-12-01

Electrical conductivity is one of the characteristic physical parameters of materials making up Earth's interior which is sensitive to variations of temperature, chemical composition, water content, and partial melt. As a consequence, estimating lithosphere and upper mantle (LUM) electrical conductivity structure is a potentially strong tool for mapping their chemistry, mineralogy and physical structure thus presenting a complementary method to seismic studies that focus on LUM elastic properties. Global electromagnetic (EM) studies, which provide information on LUM electrical conductivity, have attracted increasing interest during the last decade, mainly for three reasons. A primary reason is the recent growth in the amount of EM data available, especially from low-Earth orbiting magnetic satellite missions (Oersted, CHAMP, SAC-C, and Swarm). A second reason is the great interest in the characterization of the three-dimensional properties of Earth's interior on a global scale. Finally, the interest has also resulted from the significant methodological progress made during the last years in EM data analysis, forward modelling and inversion. In this talk I will summarize advances and challenges in EM data interpretation, and present recent global and regional models of LUM conductivity derived from satellite and ground-based data. I will also discuss possible topics for future research.

Microstructure-based hyperelastic models for closed-cell solids

PubMed Central

Wyatt, Hayley

2017-01-01

For cellular bodies involving large elastic deformations, mesoscopic continuum models that take into account the interplay between the geometry and the microstructural responses of the constituents are developed, analysed and compared with finite-element simulations of cellular structures with different architecture. For these models, constitutive restrictions for the physical plausibility of the material responses are established, and global descriptors such as nonlinear elastic and shear moduli and Poisson’s ratio are obtained from the material characteristics of the constituents. Numerical results show that these models capture well the mechanical responses of finite-element simulations for three-dimensional periodic structures of neo-Hookean material with closed cells under large tension. In particular, the mesoscopic models predict the macroscopic stiffening of the structure when the stiffness of the cell-core increases. PMID:28484340

Microstructure-based hyperelastic models for closed-cell solids.

PubMed

Mihai, L Angela; Wyatt, Hayley; Goriely, Alain

2017-04-01

For cellular bodies involving large elastic deformations, mesoscopic continuum models that take into account the interplay between the geometry and the microstructural responses of the constituents are developed, analysed and compared with finite-element simulations of cellular structures with different architecture. For these models, constitutive restrictions for the physical plausibility of the material responses are established, and global descriptors such as nonlinear elastic and shear moduli and Poisson's ratio are obtained from the material characteristics of the constituents. Numerical results show that these models capture well the mechanical responses of finite-element simulations for three-dimensional periodic structures of neo-Hookean material with closed cells under large tension. In particular, the mesoscopic models predict the macroscopic stiffening of the structure when the stiffness of the cell-core increases.

Microstructure-based hyperelastic models for closed-cell solids

NASA Astrophysics Data System (ADS)

Mihai, L. Angela; Wyatt, Hayley; Goriely, Alain

2017-04-01

For cellular bodies involving large elastic deformations, mesoscopic continuum models that take into account the interplay between the geometry and the microstructural responses of the constituents are developed, analysed and compared with finite-element simulations of cellular structures with different architecture. For these models, constitutive restrictions for the physical plausibility of the material responses are established, and global descriptors such as nonlinear elastic and shear moduli and Poisson's ratio are obtained from the material characteristics of the constituents. Numerical results show that these models capture well the mechanical responses of finite-element simulations for three-dimensional periodic structures of neo-Hookean material with closed cells under large tension. In particular, the mesoscopic models predict the macroscopic stiffening of the structure when the stiffness of the cell-core increases.

Optimization of a hydrodynamic separator using a multiscale computational fluid dynamics approach.

PubMed

Schmitt, Vivien; Dufresne, Matthieu; Vazquez, Jose; Fischer, Martin; Morin, Antoine

2013-01-01

This article deals with the optimization of a hydrodynamic separator working on the tangential separation mechanism along a screen. The aim of this study is to optimize the shape of the device to avoid clogging. A multiscale approach is used. This methodology combines measurements and computational fluid dynamics (CFD). A local model enables us to observe the different phenomena occurring at the orifice scale, which shows the potential of expanded metal screens. A global model is used to simulate the flow within the device using a conceptual model of the screen (porous wall). After validation against the experimental measurements, the global model was used to investigate the influence of deflectors and disk plates in the structure.

The GEWEX LandFlux project: Evaluation of model evaporation using tower-based and globally gridded forcing data

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCabe, M. F.; Ershadi, A.; Jimenez, C.

Determining the spatial distribution and temporal development of evaporation at regional and global scales is required to improve our understanding of the coupled water and energy cycles and to better monitor any changes in observed trends and variability of linked hydrological processes. With recent international efforts guiding the development of long-term and globally distributed flux estimates, continued product assessments are required to inform upon the selection of suitable model structures and also to establish the appropriateness of these multi-model simulations for global application. In support of the objectives of the Global Energy and Water Cycle Exchanges (GEWEX) LandFlux project, fourmore » commonly used evaporation models are evaluated against data from tower-based eddy-covariance observations, distributed across a range of biomes and climate zones. The selected schemes include the Surface Energy Balance System (SEBS) approach, the Priestley–Taylor Jet Propulsion Laboratory (PT-JPL) model, the Penman–Monteith-based Mu model (PM-Mu) and the Global Land Evaporation Amsterdam Model (GLEAM). Here we seek to examine the fidelity of global evaporation simulations by examining the multi-model response to varying sources of forcing data. To do this, we perform parallel and collocated model simulations using tower-based data together with a global-scale grid-based forcing product. Through quantifying the multi-model response to high-quality tower data, a better understanding of the subsequent model response to the coarse-scale globally gridded data that underlies the LandFlux product can be obtained, while also providing a relative evaluation and assessment of model performance. Using surface flux observations from 45 globally distributed eddy-covariance stations as independent metrics of performance, the tower-based analysis indicated that PT-JPL provided the highest overall statistical performance (0.72; 61 W m –2; 0.65), followed closely by GLEAM (0.68; 64 W m –2; 0.62), with values in parentheses representing the R 2, RMSD and Nash–Sutcliffe efficiency (NSE), respectively. PM-Mu (0.51; 78 W m –2; 0.45) tended to underestimate fluxes, while SEBS (0.72; 101 W m –2; 0.24) overestimated values relative to observations. A focused analysis across specific biome types and climate zones showed considerable variability in the performance of all models, with no single model consistently able to outperform any other. Results also indicated that the global gridded data tended to reduce the performance for all of the studied models when compared to the tower data, likely a response to scale mismatch and issues related to forcing quality. Rather than relying on any single model simulation, the spatial and temporal variability at both the tower- and grid-scale highlighted the potential benefits of developing an ensemble or blended evaporation product for global-scale LandFlux applications. Hence, challenges related to the robust assessment of the LandFlux product are also discussed.« less

The GEWEX LandFlux project: Evaluation of model evaporation using tower-based and globally gridded forcing data

DOE PAGES

McCabe, M. F.; Ershadi, A.; Jimenez, C.; ...

2016-01-26

Determining the spatial distribution and temporal development of evaporation at regional and global scales is required to improve our understanding of the coupled water and energy cycles and to better monitor any changes in observed trends and variability of linked hydrological processes. With recent international efforts guiding the development of long-term and globally distributed flux estimates, continued product assessments are required to inform upon the selection of suitable model structures and also to establish the appropriateness of these multi-model simulations for global application. In support of the objectives of the Global Energy and Water Cycle Exchanges (GEWEX) LandFlux project, fourmore » commonly used evaporation models are evaluated against data from tower-based eddy-covariance observations, distributed across a range of biomes and climate zones. The selected schemes include the Surface Energy Balance System (SEBS) approach, the Priestley–Taylor Jet Propulsion Laboratory (PT-JPL) model, the Penman–Monteith-based Mu model (PM-Mu) and the Global Land Evaporation Amsterdam Model (GLEAM). Here we seek to examine the fidelity of global evaporation simulations by examining the multi-model response to varying sources of forcing data. To do this, we perform parallel and collocated model simulations using tower-based data together with a global-scale grid-based forcing product. Through quantifying the multi-model response to high-quality tower data, a better understanding of the subsequent model response to the coarse-scale globally gridded data that underlies the LandFlux product can be obtained, while also providing a relative evaluation and assessment of model performance. Using surface flux observations from 45 globally distributed eddy-covariance stations as independent metrics of performance, the tower-based analysis indicated that PT-JPL provided the highest overall statistical performance (0.72; 61 W m –2; 0.65), followed closely by GLEAM (0.68; 64 W m –2; 0.62), with values in parentheses representing the R 2, RMSD and Nash–Sutcliffe efficiency (NSE), respectively. PM-Mu (0.51; 78 W m –2; 0.45) tended to underestimate fluxes, while SEBS (0.72; 101 W m –2; 0.24) overestimated values relative to observations. A focused analysis across specific biome types and climate zones showed considerable variability in the performance of all models, with no single model consistently able to outperform any other. Results also indicated that the global gridded data tended to reduce the performance for all of the studied models when compared to the tower data, likely a response to scale mismatch and issues related to forcing quality. Rather than relying on any single model simulation, the spatial and temporal variability at both the tower- and grid-scale highlighted the potential benefits of developing an ensemble or blended evaporation product for global-scale LandFlux applications. Hence, challenges related to the robust assessment of the LandFlux product are also discussed.« less

Mesoscale weather and climate modeling with the global non-hydrostatic Goddard Earth Observing System Model (GEOS-5) at cloud-permitting resolutions

NASA Astrophysics Data System (ADS)

Putman, W. M.; Suarez, M.

2009-12-01

The Goddard Earth Observing System Model (GEOS-5), an earth system model developed in the NASA Global Modeling and Assimilation Office (GMAO), has integrated the non-hydrostatic finite-volume dynamical core on the cubed-sphere grid. The extension to a non-hydrostatic dynamical framework and the quasi-uniform cubed-sphere geometry permits the efficient exploration of global weather and climate modeling at cloud permitting resolutions of 10- to 4-km on today's high performance computing platforms. We have explored a series of incremental increases in global resolution with GEOS-5 from it's standard 72-level 27-km resolution (~5.5 million cells covering the globe from the surface to 0.1 hPa) down to 3.5-km (~3.6 billion cells). We will present results from a series of forecast experiments exploring the impact of the non-hydrostatic dynamics at transition resolutions of 14- to 7-km, and the influence of increased horizontal/vertical resolution on convection and physical parameterizations within GEOS-5. Regional and mesoscale features of 5- to 10-day weather forecasts will be presented and compared with satellite observations. Our results will highlight the impact of resolution on the structure of cloud features including tropical convection and tropical cyclone predicability, cloud streets, von Karman vortices, and the marine stratocumulus cloud layer. We will also present experiment design and early results from climate impact experiments for global non-hydrostatic models using GEOS-5. Our climate experiments will focus on support for the Year of Tropical Convection (YOTC). We will also discuss a seasonal climate time-slice experiment design for downscaling coarse resolution century scale climate simulations to global non-hydrostatic resolutions of 14- to 7-km with GEOS-5.

Studies of planetary upper atmospheres through occultations

NASA Technical Reports Server (NTRS)

Elliot, J. L.

1982-01-01

The structure, composition, dynamics and energy balance of planetary upper atmospheres through interpretation of steller occultation data from Uranus is discussed. The wave-optical problem of modelling strong scintillation for arbitrary turbulent atmospheres is studied, as well as influence of turbulence. It was concluded that quasi-global features of atmospheric structure are accurately determined by numerical inversion. Horizontally inhomogeneous structures are filtered out and have little effect on temperature profiles.

Uniscale multi-view registration using double dog-leg method

NASA Astrophysics Data System (ADS)

Chen, Chao-I.; Sargent, Dusty; Tsai, Chang-Ming; Wang, Yuan-Fang; Koppel, Dan

2009-02-01

3D computer models of body anatomy can have many uses in medical research and clinical practices. This paper describes a robust method that uses videos of body anatomy to construct multiple, partial 3D structures and then fuse them to form a larger, more complete computer model using the structure-from-motion framework. We employ the Double Dog-Leg (DDL) method, a trust-region based nonlinear optimization method, to jointly optimize the camera motion parameters (rotation and translation) and determine a global scale that all partial 3D structures should agree upon. These optimized motion parameters are used for constructing local structures, and the global scale is essential for multi-view registration after all these partial structures are built. In order to provide a good initial guess of the camera movement parameters and outlier free 2D point correspondences for DDL, we also propose a two-stage scheme where multi-RANSAC with a normalized eight-point algorithm is first performed and then a few iterations of an over-determined five-point algorithm is used to polish the results. Our experimental results using colonoscopy video show that the proposed scheme always produces more accurate outputs than the standard RANSAC scheme. Furthermore, since we have obtained many reliable point correspondences, time-consuming and error-prone registration methods like the iterative closest points (ICP) based algorithms can be replaced by a simple rigid-body transformation solver when merging partial structures into a larger model.

Understanding changes in the UK's CO2 emissions: a global perspective.

PubMed

Baiocchi, Giovanni; Minx, Jan C

2010-02-15

The UK appears to be a leading country in curbing greenhouse gas (GHG) emissions. Unlike many other developed countries, it has already met its Kyoto obligations and defined ambitious, legally binding targets for the future. Recently this achievement has been called into question as it ignores rapidly changing patterns of production and international trade. We use structural decomposition analysis (SDA) to investigate the drivers behind annual changes in CO(2) emission from consumption in the UK between 1992 and 2004. In contrast with previous SDA-based studies, we apply the decomposition to a global, multiregional input-output model (MRIO), which accounts for UK imports from all regions and uses region-specific production structures and CO(2) intensities. We find that improvements from "domestic" changes in efficiency and production structure led to a 148 Mt reduction in CO(2) emissions, which only partially offsets emission increases of 217 Mt from changes in the global supply chain and from growing consumer demand. Recent emission reductions achieved in the UK are not merely a reflection of a greening of the domestic supply chain, but also of a change in the international division of labor in the global production of goods and services.

Using Global Plate Velocity Boundary Conditions for Embedded Regional Geodynamic Models: Application to 3-D Modeling of the Early Rifting of the South Atlantic

NASA Astrophysics Data System (ADS)

Taramón, Jorge M.; Morgan, Jason P.; Pérez-Gussinyé, Marta

2016-04-01

The treatment of far-field boundary conditions is one of the most poorly resolved issues for regional modeling of geodynamic processes. In viscous flow, the choice of far-field boundary conditions often strongly shapes the large-scale structure of a geosimulation. The mantle velocity field along the sidewalls and base of a modeling region is typically much more poorly known than the geometry of past global motions of the surface plates as constrained by global plate motion reconstructions. For regional rifting models it has become routine to apply highly simplified 'plate spreading' or 'uniform rifting' boundary conditions to a 3-D model that limits its ability to simulate the geodynamic evolution of a specific rifted margin. One way researchers are exploring the sensitivity of regional models to uncertain boundary conditions is to use a nested modeling approach in which a global model is used to determine a large-scale flow pattern that is imposed as a constraint along the boundaries of the region to be modeled. Here we explore the utility of a different approach that takes advantage of the ability of finite element models to use unstructured meshes than can embed much higher resolution sub-regions. Here we demonstrate the workflow and code tools that we created to generate this unstructured mesh: solver based on springs, guide-mesh and routines to improve the quality, e.g., closeness to a regular tetrahedron, of the tetrahedral elements of the mesh. Note that the same routines are used to generate a new mesh in the remeshing of a distorted Lagrangian mesh. In our initial project to validate this approach, we create a global spherical shell mesh in which a higher resolution sub-region is created around the nascent South Atlantic Rifting Margin. Global Plate motion BCs and plate boundaries are applied for the time of the onset of rifting, continuing through several 10s of Ma of rifting. Thermal, compositional, and melt-related buoyancy forces are only non-zero within the high-resolution sub-region, elsewhere, motions are constrained by surface plate-motion constraints. The total number of unknowns needed to solve an embedded regional model with this approach is less than 1/3 larger than that needed for a structured-mesh solution on a Cartesian or spherical cap sub-regional mesh. Here we illustrate the steps within this workflow for modeling the potential mantle flow associated with the early rifting evolution of the South Atlantic, in particular studying the potential effects of a 'Parana Plume' during the transition from rift to drift.

Goddard Cumulus Ensemble (GCE) Model: Application for Understanding Preciptation Processes

NASA Technical Reports Server (NTRS)

Tao, Wei-Kuo; Einaudi, Franco (Technical Monitor)

2000-01-01

The global hydrological cycle is central to climate system interactions and the key to understanding their behavior. Rainfall and its associated precipitation processes are a key link in the hydrologic cycle. Fresh water provided by tropical rainfall and its variability can exert a large impact upon the structure of the upper ocean layer. In addition, approximately two-thirds of the global rain falls in the Tropics, while the associated latent heat release accounts for about three-fourths of the total heat energy for the Earth's atmosphere. Precipitation from convective cloud systems comprises a large portion of tropical heating and rainfall. Furthermore, the vertical distribution of convective latent-heat releases modulates large-scale tropical circulations (e.g., the 30-60-day intraseasonal oscillation), which, in turn, impacts midlatitude weather through teleconnection patterns such as those associated with El Nino. Shifts in these global circulations can result in prolonged periods of droughts and floods, thereby exerting a tremendous impact upon the biosphere and human habitation. And yet, monthly rainfall over the tropical oceans is still not known within a factor of two over large (5 degrees latitude by 5 degrees longitude) areas. Hence, the Tropical Rainfall Measuring Mission (TRMM), a joint U.S./Japan space project, can provide a more accurate measurement of rainfall as well as estimate the four-dimensional structure of diabatic heating over the global tropics. The distributions of rainfall and inferred heating can be used to advance our understanding of the global energy and water cycle. In addition, this information can be used for global circulation and climate models for testing and improving their parameterizations.

Structural Limitations of Model Reference Adaptive Controllers

DTIC Science & Technology

1989-04-01

Global Uncertainty CkpVps)I4(s) kWVh(s) In [3) a design rule similar the one studied heme Dps(ms+Cs)V~)Ds = s (4) (ectly the samne when n-m--l) was...Ir represent the under the uncertainty indicated by ES and Eu. output of this structured singular value analysis, p: is an Defint 6: The Design

Factorial Structure of Rosenberg's Self-Esteem Scale among Crack-Cocaine Drug Users.

ERIC Educational Resources Information Center

Wang, Jichuan; Siegal, Harvey A.; Falck, Russell S.; Carlson, Robert G.

2001-01-01

Used nine different confirmatory factor analysis models to test the factorial structure of Rosenberg's (M. Rosenberg, 1965) self-esteem scale with a sample of 430 crack-cocaine users. Results partly support earlier research to show a single global self-esteem factor underlying responses to the Rosenberg scale, method effects associated with item…

Brain Structure-function Couplings (FY11)

DTIC Science & Technology

2012-01-01

influence time-evolving models of global brain function and dynamic changes in cognitive performance. Both structural and functional connections change on...Artifact Resistant Measure to Detect Cognitive EEG Activity During Locomotion. Journal of NeuroEngineering and Rehabilitation, submitted. 10...Specifically, identifying the communication between brain regions that occurs during tasks may provide information regarding the cognitive processes involved in

The CHIC Model: A Global Model for Coupled Binary Data

ERIC Educational Resources Information Center

Wilderjans, Tom; Ceulemans, Eva; Van Mechelen, Iven

2008-01-01

Often problems result in the collection of coupled data, which consist of different N-way N-mode data blocks that have one or more modes in common. To reveal the structure underlying such data, an integrated modeling strategy, with a single set of parameters for the common mode(s), that is estimated based on the information in all data blocks, may…

A Structural Model of Self-Concept, Autonomous Motivation and Academic Performance in Cross-Cultural Perspective

ERIC Educational Resources Information Center

Ahmed, Wondimu; Bruinsma, Marjon

2006-01-01

The purpose of this study was to propose and test a motivational model of performance by integrating constructs from self-concept and self-determination theories and to explore cultural group differences in the model. To this end, self-report measures of global self-esteem, academic self-concept, academic motivation and academic performance were…

China's "Exported Carbon" Peak: Patterns, Drivers, and Implications

NASA Astrophysics Data System (ADS)

Mi, Zhifu; Meng, Jing; Green, Fergus; Coffman, D'Maris; Guan, Dabo

2018-05-01

Over the past decade, China has entered a "new normal" phase in economic development, with its role in global trade flows changing significantly. This study estimates the driving forces of Chinese export-embodied carbon emissions in the new normal phase, based on environmentally extended multiregional input-output modeling and structural decomposition analysis. We find that Chinese export-embodied CO2 emissions peaked in 2008 at a level of 1,657 million tones. The subsequent decline in CO2 emissions was mainly due to the changing structure of Chinese production. The peak in Chinese export-embodied emissions is encouraging from the perspective of global climate change mitigation, as it implies downward pressure on global CO2 emissions. However, more attention should focus on ensuring that countries that may partly replace China as major production bases increase their exports using low-carbon inputs.

Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

NASA Astrophysics Data System (ADS)

Fu, Linyun; Ma, Xiaogang; Zheng, Jin; Goldstein, Justin; Duggan, Brian; West, Patrick; Aulenbach, Steve; Tilmes, Curt; Fox, Peter

2014-05-01

This poster will show how we used a case-driven iterative methodology to develop an ontology to represent the content structure and the associated provenance information in a National Climate Assessment (NCA) report of the US Global Change Research Program (USGCRP). We applied the W3C PROV-O ontology to implement a formal representation of provenance. We argue that the use case-driven, iterative development process and the application of a formal provenance ontology help efficiently incorporate domain knowledge from earth and environmental scientists in a well-structured model interoperable in the context of the Web of Data.

Scalable PGAS Metadata Management on Extreme Scale Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chavarría-Miranda, Daniel; Agarwal, Khushbu; Straatsma, TP

Programming models intended to run on exascale systems have a number of challenges to overcome, specially the sheer size of the system as measured by the number of concurrent software entities created and managed by the underlying runtime. It is clear from the size of these systems that any state maintained by the programming model has to be strictly sub-linear in size, in order not to overwhelm memory usage with pure overhead. A principal feature of Partitioned Global Address Space (PGAS) models is providing easy access to global-view distributed data structures. In order to provide efficient access to these distributedmore » data structures, PGAS models must keep track of metadata such as where array sections are located with respect to processes/threads running on the HPC system. As PGAS models and applications become ubiquitous on very large transpetascale systems, a key component to their performance and scalability will be efficient and judicious use of memory for model overhead (metadata) compared to application data. We present an evaluation of several strategies to manage PGAS metadata that exhibit different space/time tradeoffs. We use two real-world PGAS applications to capture metadata usage patterns and gain insight into their communication behavior.« less

Mesoscopic Effects in an Agent-Based Bargaining Model in Regular Lattices

PubMed Central

Poza, David J.; Santos, José I.; Galán, José M.; López-Paredes, Adolfo

2011-01-01

The effect of spatial structure has been proved very relevant in repeated games. In this work we propose an agent based model where a fixed finite population of tagged agents play iteratively the Nash demand game in a regular lattice. The model extends the multiagent bargaining model by Axtell, Epstein and Young [1] modifying the assumption of global interaction. Each agent is endowed with a memory and plays the best reply against the opponent's most frequent demand. We focus our analysis on the transient dynamics of the system, studying by computer simulation the set of states in which the system spends a considerable fraction of the time. The results show that all the possible persistent regimes in the global interaction model can also be observed in this spatial version. We also find that the mesoscopic properties of the interaction networks that the spatial distribution induces in the model have a significant impact on the diffusion of strategies, and can lead to new persistent regimes different from those found in previous research. In particular, community structure in the intratype interaction networks may cause that communities reach different persistent regimes as a consequence of the hindering diffusion effect of fluctuating agents at their borders. PMID:21408019

Mesoscopic effects in an agent-based bargaining model in regular lattices.

PubMed

Poza, David J; Santos, José I; Galán, José M; López-Paredes, Adolfo

2011-03-09

The effect of spatial structure has been proved very relevant in repeated games. In this work we propose an agent based model where a fixed finite population of tagged agents play iteratively the Nash demand game in a regular lattice. The model extends the multiagent bargaining model by Axtell, Epstein and Young modifying the assumption of global interaction. Each agent is endowed with a memory and plays the best reply against the opponent's most frequent demand. We focus our analysis on the transient dynamics of the system, studying by computer simulation the set of states in which the system spends a considerable fraction of the time. The results show that all the possible persistent regimes in the global interaction model can also be observed in this spatial version. We also find that the mesoscopic properties of the interaction networks that the spatial distribution induces in the model have a significant impact on the diffusion of strategies, and can lead to new persistent regimes different from those found in previous research. In particular, community structure in the intratype interaction networks may cause that communities reach different persistent regimes as a consequence of the hindering diffusion effect of fluctuating agents at their borders.

OESbathy version 1.0: a method for reconstructing ocean bathymetry with generalized continental shelf-slope-rise structures

NASA Astrophysics Data System (ADS)

Goswami, A.; Olson, P. L.; Hinnov, L. A.; Gnanadesikan, A.

2015-09-01

We present a method for reconstructing global ocean bathymetry that combines a standard plate cooling model for the oceanic lithosphere based on the age of the oceanic crust, global oceanic sediment thicknesses, plus generalized shelf-slope-rise structures calibrated at modern active and passive continental margins. Our motivation is to develop a methodology for reconstructing ocean bathymetry in the geologic past that includes heterogeneous continental margins in addition to abyssal ocean floor. First, the plate cooling model is applied to maps of ocean crustal age to calculate depth to basement. To the depth to basement we add an isostatically adjusted, multicomponent sediment layer constrained by sediment thickness in the modern oceans and marginal seas. A three-parameter continental shelf-slope-rise structure completes the bathymetry reconstruction, extending from the ocean crust to the coastlines. Parameters of the shelf-slope-rise structures at active and passive margins are determined from modern ocean bathymetry at locations where a complete history of seafloor spreading is preserved. This includes the coastal regions of the North, South, and central Atlantic, the Southern Ocean between Australia and Antarctica, and the Pacific Ocean off the west coast of South America. The final products are global maps at 0.1° × 0.1° resolution of depth to basement, ocean bathymetry with an isostatically adjusted multicomponent sediment layer, and ocean bathymetry with reconstructed continental shelf-slope-rise structures. Our reconstructed bathymetry agrees with the measured ETOPO1 bathymetry at most passive margins, including the east coast of North America, north coast of the Arabian Sea, and northeast and southeast coasts of South America. There is disagreement at margins with anomalous continental shelf-slope-rise structures, such as around the Arctic Ocean, the Falkland Islands, and Indonesia.

Cross-site comparison of land-use decision-making and its consequences across land systems with a generalized agent-based model.

PubMed

Magliocca, Nicholas R; Brown, Daniel G; Ellis, Erle C

2014-01-01

Local changes in land use result from the decisions and actions of land-users within land systems, which are structured by local and global environmental, economic, political, and cultural contexts. Such cross-scale causation presents a major challenge for developing a general understanding of how local decision-making shapes land-use changes at the global scale. This paper implements a generalized agent-based model (ABM) as a virtual laboratory to explore how global and local processes influence the land-use and livelihood decisions of local land-users, operationalized as settlement-level agents, across the landscapes of six real-world test sites. Test sites were chosen in USA, Laos, and China to capture globally-significant variation in population density, market influence, and environmental conditions, with land systems ranging from swidden to commercial agriculture. Publicly available global data were integrated into the ABM to model cross-scale effects of economic globalization on local land-use decisions. A suite of statistics was developed to assess the accuracy of model-predicted land-use outcomes relative to observed and random (i.e. null model) landscapes. At four of six sites, where environmental and demographic forces were important constraints on land-use choices, modeled land-use outcomes were more similar to those observed across sites than the null model. At the two sites in which market forces significantly influenced land-use and livelihood decisions, the model was a poorer predictor of land-use outcomes than the null model. Model successes and failures in simulating real-world land-use patterns enabled the testing of hypotheses on land-use decision-making and yielded insights on the importance of missing mechanisms. The virtual laboratory approach provides a practical framework for systematic improvement of both theory and predictive skill in land change science based on a continual process of experimentation and model enhancement.

The Earth’s Population Can Reach 14 Billion in the 23rd Century without Significant Adverse Effects on Survivability

PubMed Central

Krapivin, Vladimir F.; Varotsos, Costas A.; Soldatov, Vladimir Yu.

2017-01-01

This paper presents the results obtained from the study of the sustainable state between nature and human society on a global scale, focusing on the most critical interactions between the natural and anthropogenic processes. Apart from the conventional global models, the basic tool employed herein is the newly proposed complex model entitled “nature-society system (NSS) model”, through which a reliable modeling of the processes taking place in the global climate-nature-society system (CNSS) is achieved. This universal tool is mainly based on the information technology that allows the adaptive conformance of the parametric and functional space of this model. The structure of this model includes the global biogeochemical cycles, the hydrological cycle, the demographic processes and a simple climate model. In this model, the survivability indicator is used as a criterion for the survival of humanity, which defines a trend in the dynamics of the total biomass of the biosphere, taking into account the trends of the biocomplexity dynamics of the land and hydrosphere ecosystems. It should be stressed that there are no other complex global models comparable to those of the CNSS model developed here. The potential of this global model is demonstrated through specific examples in which the classification of the terrestrial ecosystem is accomplished by separating 30 soil-plant formations for geographic pixels 4° × 5°. In addition, humanity is considered to be represented by three groups of economic development status (high, transition, developing) and the World Ocean is parameterized by three latitude zones (low, middle, high). The modelling results obtained show the dynamics of the CNSS at the beginning of the 23rd century, according to which the world population can reach the level of 14 billion without the occurrence of major negative impacts. PMID:28783136

Cross-Site Comparison of Land-Use Decision-Making and Its Consequences across Land Systems with a Generalized Agent-Based Model

PubMed Central

Magliocca, Nicholas R.; Brown, Daniel G.; Ellis, Erle C.

2014-01-01

Local changes in land use result from the decisions and actions of land-users within land systems, which are structured by local and global environmental, economic, political, and cultural contexts. Such cross-scale causation presents a major challenge for developing a general understanding of how local decision-making shapes land-use changes at the global scale. This paper implements a generalized agent-based model (ABM) as a virtual laboratory to explore how global and local processes influence the land-use and livelihood decisions of local land-users, operationalized as settlement-level agents, across the landscapes of six real-world test sites. Test sites were chosen in USA, Laos, and China to capture globally-significant variation in population density, market influence, and environmental conditions, with land systems ranging from swidden to commercial agriculture. Publicly available global data were integrated into the ABM to model cross-scale effects of economic globalization on local land-use decisions. A suite of statistics was developed to assess the accuracy of model-predicted land-use outcomes relative to observed and random (i.e. null model) landscapes. At four of six sites, where environmental and demographic forces were important constraints on land-use choices, modeled land-use outcomes were more similar to those observed across sites than the null model. At the two sites in which market forces significantly influenced land-use and livelihood decisions, the model was a poorer predictor of land-use outcomes than the null model. Model successes and failures in simulating real-world land-use patterns enabled the testing of hypotheses on land-use decision-making and yielded insights on the importance of missing mechanisms. The virtual laboratory approach provides a practical framework for systematic improvement of both theory and predictive skill in land change science based on a continual process of experimentation and model enhancement. PMID:24489696

Posttest analysis of the 1:6-scale reinforced concrete containment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pfeiffer, P.A.; Kennedy, J.M.; Marchertas, A.H.

A prediction of the response of the Sandia National Laboratories 1:6- scale reinforced concrete containment model test was made by Argonne National Laboratory. ANL along with nine other organizations performed a detailed nonlinear response analysis of the 1:6-scale model containment subjected to overpressurization in the fall of 1986. The two-dimensional code TEMP-STRESS and the three-dimensional NEPTUNE code were utilized (1) to predict the global response of the structure, (2) to identify global failure sites and the corresponding failure pressures and (3) to identify some local failure sites and pressure levels. A series of axisymmetric models was studied with the two-dimensionalmore » computer program TEMP-STRESS. The comparison of these pretest computations with test data from the containment model has provided a test for the capability of the respective finite element codes to predict global failure modes, and hence serves as a validation of these codes. Only the two-dimensional analyses will be discussed in this paper. 3 refs., 10 figs.« less

Chronic Motivational State Interacts with Task Reward Structure in Dynamic Decision-Making

PubMed Central

Cooper, Jessica A.; Worthy, Darrell A.; Maddox, W. Todd

2015-01-01

Research distinguishes between a habitual, model-free system motivated toward immediately rewarding actions, and a goal-directed, model-based system motivated toward actions that improve future state. We examined the balance of processing in these two systems during state-based decision-making. We tested a regulatory fit hypothesis (Maddox & Markman, 2010) that predicts that global trait motivation affects the balance of habitual- vs. goal-directed processing but only through its interaction with the task framing as gain-maximization or loss-minimization. We found support for the hypothesis that a match between an individual’s chronic motivational state and the task framing enhances goal-directed processing, and thus state-based decision-making. Specifically, chronic promotion-focused individuals under gain-maximization and chronic prevention-focused individuals under loss-minimization both showed enhanced state-based decision-making. Computational modeling indicates that individuals in a match between global chronic motivational state and local task reward structure engaged more goal-directed processing, whereas those in a mismatch engaged more habitual processing. PMID:26520256

Langevin Equation for DNA Dynamics

NASA Astrophysics Data System (ADS)

Grych, David; Copperman, Jeremy; Guenza, Marina

Under physiological conditions, DNA oligomers can contain well-ordered helical regions and also flexible single-stranded regions. We describe the site-specific motion of DNA with a modified Rouse-Zimm Langevin equation formalism that describes DNA as a coarse-grained polymeric chain with global structure and local flexibility. The approach has successfully described the protein dynamics in solution and has been extended to nucleic acids. Our approach provides diffusive mode analytical solutions for the dynamics of global rotational diffusion and internal motion. The internal DNA dynamics present a rich energy landscape that accounts for an interior where hydrogen bonds and base-stacking determine structure and experience limited solvent exposure. We have implemented several models incorporating different coarse-grained sites with anisotropic rotation, energy barrier crossing, and local friction coefficients that include a unique internal viscosity and our models reproduce dynamics predicted by atomistic simulations. The models reproduce bond autocorrelation along the sequence as compared to that directly calculated from atomistic molecular dynamics simulations. The Langevin equation approach captures the essence of DNA dynamics without a cumbersome atomistic representation.

Cirrus cloud spectra and layers observed during the FIRE and GASP projects

NASA Technical Reports Server (NTRS)

Flatau, Piotr J.; Gultepe, I.; Nastrom, G.; Cotton, William R.; Heymsfield, A. J.

1990-01-01

A general characterization is developed for cirrus clouds in terms of their spectra, shapes, optical thicknesses, and radiative properties for use in numerical models. Data sets from the Global Atmospheric Sampling Project (GASP) of the upper troposphere and the First ISCCP Regional Experiment (FIRE) are combined and analyzed to study general traits of cirrus clouds. A definition is given for 2D turbulence, and the GASP and FIRE data sets are examined with respect to cirrus layers and entrainment and to dominant turbulent scales. The approach employs conditional sampling in cloudy and clear air, power-spectral analysis, and mixing-line-type diagrams. Evidence is given for a well mixed cloud deck and for the tendency of cirrus to be formed in multilayer structures. The results are of use in mesoscale and global circulation models which predict cirrus, in small-scale cirrus modeling, and in studying the role of gravity waves in the horizontal structure of upper tropospheric clouds.

Fatigue Technology Assessment and Strategies for Fatigue Avoidance in Marine Structures

DTIC Science & Technology

1992-06-01

time history. xii MODELING ERROR (Xme) : Typically defined as the ratio of actual behavior of the structure to the one predicted by the model. It is...and temperature changes may be important to fatigue in a local component, these loadings are not a major concern in the global behavior of typical...Reference 3.1) to assess fracture behavior in a low toughness HAZ indicated that a small low- toughness area in the HAZ can be masked by the higher

Evolutionary optimization with data collocation for reverse engineering of biological networks.

PubMed

Tsai, Kuan-Yao; Wang, Feng-Sheng

2005-04-01

Modern experimental biology is moving away from analyses of single elements to whole-organism measurements. Such measured time-course data contain a wealth of information about the structure and dynamic of the pathway or network. The dynamic modeling of the whole systems is formulated as a reverse problem that requires a well-suited mathematical model and a very efficient computational method to identify the model structure and parameters. Numerical integration for differential equations and finding global parameter values are still two major challenges in this field of the parameter estimation of nonlinear dynamic biological systems. We compare three techniques of parameter estimation for nonlinear dynamic biological systems. In the proposed scheme, the modified collocation method is applied to convert the differential equations to the system of algebraic equations. The observed time-course data are then substituted into the algebraic system equations to decouple system interactions in order to obtain the approximate model profiles. Hybrid differential evolution (HDE) with population size of five is able to find a global solution. The method is not only suited for parameter estimation but also can be applied for structure identification. The solution obtained by HDE is then used as the starting point for a local search method to yield the refined estimates.

Temperature-Correlated Changes in Phytoplankton Community Structure Are Restricted to Polar Waters.

PubMed

Ward, Ben A

2015-01-01

Globally distributed observations of size-fractionated chlorophyll a and temperature were used to incorporate temperature dependence into an existing semi-empirical model of phytoplankton community size structure. The additional temperature-dependent term significantly increased the model's ability to both reproduce and predict observations of chlorophyll a size-fractionation at temperatures below 2°C. The most notable improvements were in the smallest (picoplankton) size-class, for which overall model fit was more than doubled, and predictive skill was increased by approximately 40%. The model was subsequently applied to generate global maps for three phytoplankton size classes, on the basis of satellite-derived estimates of surface chlorophyll a and sea surface temperature. Polar waters were associated with marked decline in the chlorophyll a biomass of the smallest cells, relative to lower latitude waters of equivalent total chlorophyll a. In the same regions a complementary increase was seen in the chlorophyll a biomass of larger size classes. These findings suggest that a warming and stratifying ocean will see a poleward expansion of the habitat range of the smallest phytoplankton, with the possible displacement of some larger groups that currently dominate. There was no evidence of a strong temperature dependence in tropical or sub-tropical regions, suggesting that future direct temperature effects on community structure at lower latitudes may be small.

Computational Methods for Structural Mechanics and Dynamics, part 1

NASA Technical Reports Server (NTRS)

Stroud, W. Jefferson (Editor); Housner, Jerrold M. (Editor); Tanner, John A. (Editor); Hayduk, Robert J. (Editor)

1989-01-01

The structural analysis methods research has several goals. One goal is to develop analysis methods that are general. This goal of generality leads naturally to finite-element methods, but the research will also include other structural analysis methods. Another goal is that the methods be amenable to error analysis; that is, given a physical problem and a mathematical model of that problem, an analyst would like to know the probable error in predicting a given response quantity. The ultimate objective is to specify the error tolerances and to use automated logic to adjust the mathematical model or solution strategy to obtain that accuracy. A third goal is to develop structural analysis methods that can exploit parallel processing computers. The structural analysis methods research will focus initially on three types of problems: local/global nonlinear stress analysis, nonlinear transient dynamics, and tire modeling.

Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models.

PubMed

Ajelli, Marco; Gonçalves, Bruno; Balcan, Duygu; Colizza, Vittoria; Hu, Hao; Ramasco, José J; Merler, Stefano; Vespignani, Alessandro

2010-06-29

In recent years large-scale computational models for the realistic simulation of epidemic outbreaks have been used with increased frequency. Methodologies adapt to the scale of interest and range from very detailed agent-based models to spatially-structured metapopulation models. One major issue thus concerns to what extent the geotemporal spreading pattern found by different modeling approaches may differ and depend on the different approximations and assumptions used. We provide for the first time a side-by-side comparison of the results obtained with a stochastic agent-based model and a structured metapopulation stochastic model for the progression of a baseline pandemic event in Italy, a large and geographically heterogeneous European country. The agent-based model is based on the explicit representation of the Italian population through highly detailed data on the socio-demographic structure. The metapopulation simulations use the GLobal Epidemic and Mobility (GLEaM) model, based on high-resolution census data worldwide, and integrating airline travel flow data with short-range human mobility patterns at the global scale. The model also considers age structure data for Italy. GLEaM and the agent-based models are synchronized in their initial conditions by using the same disease parameterization, and by defining the same importation of infected cases from international travels. The results obtained show that both models provide epidemic patterns that are in very good agreement at the granularity levels accessible by both approaches, with differences in peak timing on the order of a few days. The relative difference of the epidemic size depends on the basic reproductive ratio, R0, and on the fact that the metapopulation model consistently yields a larger incidence than the agent-based model, as expected due to the differences in the structure in the intra-population contact pattern of the approaches. The age breakdown analysis shows that similar attack rates are obtained for the younger age classes. The good agreement between the two modeling approaches is very important for defining the tradeoff between data availability and the information provided by the models. The results we present define the possibility of hybrid models combining the agent-based and the metapopulation approaches according to the available data and computational resources.

Stochastic global identification of a bio-inspired self-sensing composite UAV wing via wind tunnel experiments

NASA Astrophysics Data System (ADS)

Kopsaftopoulos, Fotios; Nardari, Raphael; Li, Yu-Hung; Wang, Pengchuan; Chang, Fu-Kuo

2016-04-01

In this work, the system design, integration, and wind tunnel experimental evaluation are presented for a bioinspired self-sensing intelligent composite unmanned aerial vehicle (UAV) wing. A total of 148 micro-sensors, including piezoelectric, strain, and temperature sensors, in the form of stretchable sensor networks are embedded in the layup of a composite wing in order to enable its self-sensing capabilities. Novel stochastic system identification techniques based on time series models and statistical parameter estimation are employed in order to accurately interpret the sensing data and extract real-time information on the coupled air flow-structural dynamics. Special emphasis is given to the wind tunnel experimental assessment under various flight conditions defined by multiple airspeeds and angles of attack. A novel modeling approach based on the recently introduced Vector-dependent Functionally Pooled (VFP) model structure is employed for the stochastic identification of the "global" coupled airflow-structural dynamics of the wing and their correlation with dynamic utter and stall. The obtained results demonstrate the successful system-level integration and effectiveness of the stochastic identification approach, thus opening new perspectives for the state sensing and awareness capabilities of the next generation of "fly-by-fee" UAVs.

Basement structures over Rio Grande Rise from gravity inversion

NASA Astrophysics Data System (ADS)

Constantino, Renata Regina; Hackspacher, Peter Christian; de Souza, Iata Anderson; Lima Costa, Iago Sousa

2017-04-01

The basement depth in the Rio Grande Rise (RGR), South Atlantic, is estimated from combining gravity data obtained from satellite altimetry, marine surveys, bathymetry, sediment thickness and crustal thickness information. We formulate a crustal model of the region by inverse gravity modeling. The effect of the sediment layer is evaluated using the global sediment thickness model of National Oceanic and Atmospheric Administration (NOAA) and fitting the sediment compaction model to observed density values from Deep Sea Drilling Project (DSDP) reports. The Global Relief Model ETOPO1 and constraining data from seismic interpretation on crustal thickness are integrated in the inversion process. The modeled Moho depth values vary between 6 and 27 km over the area, being thicker under the RGR and also in the direction of São Paulo Plateau. The inversion for the gravity-equivalent basement topography is applied to gravity residual data, which is free from the gravity effect of sediments and from the gravity effect of the estimated Moho interface. We find several short-wavelengths structures not present in the bathymetry data. Our model shows a rift crossing the entire Rio Grande Rise deeper than previously presented in literature, with depths up to 5 km in the East Rio Grande Rise (ERGR) and deeper in the West Rio Grande Rise (WRGR), reaching 6.4 km. An interesting NS structure that goes from 34°S and extends through de São Paulo Ridge may be related to the South Atlantic Opening and could reveal an extinct spreading center.

The ISO Edi Conceptual Model Activity and Its Relationship to OSI.

ERIC Educational Resources Information Center

Fincher, Judith A.

1990-01-01

The edi conceptual model is being developed to define common structures, services, and processes that syntax-specific standards like X12 and EDIFACT could adopt. Open Systems Interconnection (OSI) is of interest to edi because of its potential to help enable global interoperability across Electronic Data Interchange (EDI) functional groups. A…

Global strong solutions to the one-dimensional heat-conductive model for planar non-resistive magnetohydrodynamics with large data

NASA Astrophysics Data System (ADS)

Li, Yang

2018-06-01

In this paper, we consider the initial-boundary value problem to the one-dimensional compressible heat-conductive model for planar non-resistive magnetohydrodynamics. By making full use of the effective viscous flux and an analogue, together with the structure of the equations, global existence and uniqueness of strong solutions are obtained on condition that the initial density is bounded below away from vacuum and the heat conductivity coefficient κ satisfies the growth condition κ _1(1+θ^{α })≤ κ (θ)≤ κ _2(1+θ^{α }),\\quad { for some }0< α < ∞, with κ _1,κ _2 being positive constants. Moreover, global solvability of strong solutions is shown with the initial vacuum. The results are obtained without any smallness restriction to the initial data.

Construction and evaluation of thoracic injury risk curves for a finite element human body model in frontal car crashes.

PubMed

Mendoza-Vazquez, Manuel; Davidsson, Johan; Brolin, Karin

2015-12-01

There is a need to improve the protection to the thorax of occupants in frontal car crashes. Finite element human body models are a more detailed representation of humans than anthropomorphic test devices (ATDs). On the other hand, there is no clear consensus on the injury criteria and the thresholds to use with finite element human body models to predict rib fractures. The objective of this study was to establish a set of injury risk curves to predict rib fractures using a modified Total HUman Model for Safety (THUMS). Injury criteria at the global, structural and material levels were computed with a modified THUMS in matched Post Mortem Human Subjects (PMHSs) tests. Finally, the quality of each injury risk curve was determined. For the included PMHS tests and the modified THUMS, DcTHOR and shear stress were the criteria at the global and material levels that reached an acceptable quality. The injury risk curves at the structural level did not reach an acceptable quality. Copyright © 2015 Elsevier Ltd. All rights reserved.

Gravitational Lenses and the Structure and Evolution of Galaxies

NASA Technical Reports Server (NTRS)

Oliversen, Ronald J. (Technical Monitor); Kochanek, Christopher

2004-01-01

During the first year of the project we completed five papers, each of which represents a new direction in the theory and interpretation of gravitational lenses. In the first paper, The Importance of Einstein Rings, we developed the first theory for the formation and structure of the Einstein rings formed by lensing extended sources like the host galaxies of quasar and radio sources. In the second paper, Cusped Mass Models Of Gravitational Lenses, we introduced a new class of lens models. In the third paper, Global Probes of the Impact of Baryons on Dark Matter Halos, we made the first globally consistent models for the separation distribution of gravitational lenses including both galaxy and cluster lenses. The last two papers explore the properties of two lenses in detail. During the second year we have focused more closely on the relationship of baryons and dark matter. In the third year we have been further examining the relationship between baryons and dark matter. In the present year we extended our statistical analysis of lens mass distributions using a self-similar model for the halo mass distribution as compared to the luminous galaxy.

Global and local threshold in a metapopulational SEIR model with quarantine

NASA Astrophysics Data System (ADS)

Gomes, Marcelo F. C.; Rossi, Luca; Pastore Y Piontti, Ana; Vespignani, Alessandro

2013-03-01

Diseases which have the possibility of transmission before the onset of symptoms pose a challenging threat to healthcare since it is hard to track spreaders and implement quarantine measures. More precisely, one main concerns regarding pandemic spreading of diseases is the prediction-and eventually control-of local outbreaks that will trigger a global invasion of a particular disease. We present a metapopulation disease spreading model with transmission from both symptomatic and asymptomatic agents and analyze the role of quarantine measures and mobility processes between subpopulations. We show that, depending on the disease parameters, it is possible to separate in the parameter space the local and global thresholds and study the system behavior as a function of the fraction of asymptomatic transmissions. This means that it is possible to have a range of parameters values where although we do not achieve local control of the outbreak it is possible to control the global spread of the disease. We validate the analytic picture in data-driven model that integrates commuting, air traffic flow and detailed information about population size and structure worldwide. Laboratory for the Modeling of Biological and Socio-Technical Systems (MoBS)

Exploring the role of movement in determining the global distribution of marine biomass using a coupled hydrodynamic - Size-based ecosystem model

NASA Astrophysics Data System (ADS)

Watson, James R.; Stock, Charles A.; Sarmiento, Jorge L.

2015-11-01

Modeling the dynamics of marine populations at a global scale - from phytoplankton to fish - is necessary if we are to quantify how climate change and other broad-scale anthropogenic actions affect the supply of marine-based food. Here, we estimate the abundance and distribution of fish biomass using a simple size-based food web model coupled to simulations of global ocean physics and biogeochemistry. We focus on the spatial distribution of biomass, identifying highly productive regions - shelf seas, western boundary currents and major upwelling zones. In the absence of fishing, we estimate the total ocean fish biomass to be ∼ 2.84 ×109 tonnes, similar to previous estimates. However, this value is sensitive to the choice of parameters, and further, allowing fish to move had a profound impact on the spatial distribution of fish biomass and the structure of marine communities. In particular, when movement is implemented the viable range of large predators is greatly increased, and stunted biomass spectra characterizing large ocean regions in simulations without movement, are replaced with expanded spectra that include large predators. These results highlight the importance of considering movement in global-scale ecological models.

Identifiability of PBPK Models with Applications to ...

EPA Pesticide Factsheets

Any statistical model should be identifiable in order for estimates and tests using it to be meaningful. We consider statistical analysis of physiologically-based pharmacokinetic (PBPK) models in which parameters cannot be estimated precisely from available data, and discuss different types of identifiability that occur in PBPK models and give reasons why they occur. We particularly focus on how the mathematical structure of a PBPK model and lack of appropriate data can lead to statistical models in which it is impossible to estimate at least some parameters precisely. Methods are reviewed which can determine whether a purely linear PBPK model is globally identifiable. We propose a theorem which determines when identifiability at a set of finite and specific values of the mathematical PBPK model (global discrete identifiability) implies identifiability of the statistical model. However, we are unable to establish conditions that imply global discrete identifiability, and conclude that the only safe approach to analysis of PBPK models involves Bayesian analysis with truncated priors. Finally, computational issues regarding posterior simulations of PBPK models are discussed. The methodology is very general and can be applied to numerous PBPK models which can be expressed as linear time-invariant systems. A real data set of a PBPK model for exposure to dimethyl arsinic acid (DMA(V)) is presented to illustrate the proposed methodology. We consider statistical analy

Global Fluxon Modeling of the Solar Corona and Inner Heliosphere

NASA Astrophysics Data System (ADS)

Lamb, D. A.; DeForest, C. E.

2017-12-01

The fluxon approach to MHD modeling enables simulations of low-beta plasmas in the absence of undesirable numerical effects such as diffusion and magnetic reconnection. The magnetic field can be modeled as a collection of discrete field lines ("fluxons") containing a set amount of magnetic flux in a prescribed field topology. Due to the fluxon model's pseudo-Lagrangian grid, simulations can be completed in a fraction of the time of traditional grid-based simulations, enabling near-real-time simulations of the global magnetic field structure and its influence on solar wind properties. Using SDO/HMI synoptic magnetograms as lower magnetic boundary conditions, and a separate one-dimensional fluid flow model attached to each fluxon, we compare the resulting fluxon relaxations with other commonly-used global models (such as PFSS), and with white-light images of the corona (including the August 2017 total solar eclipse). Finally, we show the computed magnetic field expansion ratio, and the modeled solar wind speed near the coronal-heliospheric transition. Development of the fluxon MHD model FLUX (the Field Line Universal relaXer), has been funded by NASA's Living with a Star program and by Southwest Research Institute.

LCS-TA to identify similar fragments in RNA 3D structures.

PubMed

Wiedemann, Jakub; Zok, Tomasz; Milostan, Maciej; Szachniuk, Marta

2017-10-23

In modern structural bioinformatics, comparison of molecular structures aimed to identify and assess similarities and differences between them is one of the most commonly performed procedures. It gives the basis for evaluation of in silico predicted models. It constitutes the preliminary step in searching for structural motifs. In particular, it supports tracing the molecular evolution. Faced with an ever-increasing amount of available structural data, researchers need a range of methods enabling comparative analysis of the structures from either global or local perspective. Herein, we present a new, superposition-independent method which processes pairs of RNA 3D structures to identify their local similarities. The similarity is considered in the context of structure bending and bonds' rotation which are described by torsion angles. In the analyzed RNA structures, the method finds the longest continuous segments that show similar torsion within a user-defined threshold. The length of the segment is provided as local similarity measure. The method has been implemented as LCS-TA algorithm (Longest Continuous Segments in Torsion Angle space) and is incorporated into our MCQ4Structures application, freely available for download from http://www.cs.put.poznan.pl/tzok/mcq/ . The presented approach ties torsion-angle-based method of structure analysis with the idea of local similarity identification by handling continuous 3D structure segments. The first method, implemented in MCQ4Structures, has been successfully utilized in RNA-Puzzles initiative. The second one, originally applied in Euclidean space, is a component of LGA (Local-Global Alignment) algorithm commonly used in assessing protein models submitted to CASP. This unique combination of concepts implemented in LCS-TA provides a new perspective on structure quality assessment in local and quantitative aspect. A series of computational experiments show the first results of applying our method to comparison of RNA 3D models. LCS-TA can be used for identifying strengths and weaknesses in the prediction of RNA tertiary structures.

Analysis of the dynamic behavior of structures using the high-rate GNSS-PPP method combined with a wavelet-neural model: Numerical simulation and experimental tests

NASA Astrophysics Data System (ADS)

Kaloop, Mosbeh R.; Yigit, Cemal O.; Hu, Jong W.

2018-03-01

Recently, the high rate global navigation satellite system-precise point positioning (GNSS-PPP) technique has been used to detect the dynamic behavior of structures. This study aimed to increase the accuracy of the extraction oscillation properties of structural movements based on the high-rate (10 Hz) GNSS-PPP monitoring technique. A developmental model based on the combination of wavelet package transformation (WPT) de-noising and neural network prediction (NN) was proposed to improve the dynamic behavior of structures for GNSS-PPP method. A complicated numerical simulation involving highly noisy data and 13 experimental cases with different loads were utilized to confirm the efficiency of the proposed model design and the monitoring technique in detecting the dynamic behavior of structures. The results revealed that, when combined with the proposed model, GNSS-PPP method can be used to accurately detect the dynamic behavior of engineering structures as an alternative to relative GNSS method.

Creating academic structures to promote nursing's role in global health policy.

PubMed

Gimbel, S; Kohler, P; Mitchell, P; Emami, A

2017-03-01

We highlight key components of emerging academic structures in global health nursing and explain how this investment can expand nursing's broader engagement in global health policy development. Engaging nursing in global health policy development is vital to ensure the scale-up of effective health programmes. Globally, nurses promote development of interprofessional healthcare teams who are responsible for translating sound global health policy and evidence-based programming into practice. However, the role of nurses within policy forums and on influential decision-making bodies within the global health space remains limited, which reinforces suboptimal global health policy implementation. Investment in globally engaged academic structures is an important way to expand participation of nursing in global health policy development. A review of the current knowledge and substantive findings related to academic structures promoting global health nursing was conducted, and included a directed search of institutional websites, related grey and peer-reviewed literature, and communication with top-tier schools of nursing in the United States, to identify specific developments in global health nursing academic structures. Effective academic structures promoting global health nursing include a framework of four critical components - Research, Education, Policy and Partnership. Academic structure type and core activities vary depending on institutional priorities. Increasingly, global health research, driven by individual nursing investigators, is expanding; however, in order to translate these advances into expanded involvement in global health policy development, academic structures within schools of nursing need to systematically expand educational opportunities, bolster research capacity and promote partnership with policymakers. © 2017 The Authors International Nursing Review published by John Wiley & Sons Ltd on behalf of International Council of Nurses.

“Globalized public health.” A transdisciplinary comprehensive framework for analyzing contemporary globalization’s influences on the field of public health

PubMed Central

Lapaige, Véronique

2009-01-01

The current phase of globalization represents a “double-edged sword” challenge facing public health practitioners and health policy makers. The first “edge” throws light on two constructs in the field of public health: global health (formerly international health) and globalized public health. The second “edge” is that of global governance, and raises the question, “how can we construct public health regulations that adequately respond to both global and local complexities related to the two constructs mentioned earlier (global health and globalized public health)?” The two constructs call for the development of norms that will assure sustained population-wide health improvement and these two constructs have their own conceptual tools and theoretical models that permit a better understanding of them. In this paper, we introduce the “globalized public health” construct and we present an interactive comprehensive framework for critically analyzing contemporary globalization’s influences on the field of public health. “Globalized public health”, simultaneously a theoretical model and a conceptual framework, concerns the transformation of the field of public health in the sociohistorical context of globalization. The model is the fruit of an original theoretical research study conducted from 2005 to 2008 (“contextualized research,” Gibbons’ Mode II of knowledge production), founded on a QUAL-quant sequential mixed-method design. This research also reflects our political and ideological position, fuelled with aspirations of social democracy and cosmopolitical values. It is profoundly anchored in the pragmatic approach to globalization, looking to “reconcile” the market and equity. The model offers several features to users: (1) it is transdisciplinary; (2) it is interactive (CD-ROM); (3) it is nonlinear (nonlinear interrelations between the contextual globalization and the field of public health); (4) it is synchronic/diachronic (a double-crossed perspective permits analysis of global social change, the emergence of global agency and the transmutation of the field of public health, in the full complexity of their nonlinear interaction); (5) it offers five characteristics as an auto-eco-organized system of social interactions, or dynamic, nonlinear sociohistorical system. The model features a visual interface (five interrelated figures), a structure of 30 “integrator concepts” that integrates 114 other element-parts via 1,300 hypertext links. The model is both a knowledge translation tool and an interactive heuristic guide designed for practitioners and researchers in public health/community health/population health, as well as for decision-makers at all levels. PMID:22312210

Accurate protein structure modeling using sparse NMR data and homologous structure information.

PubMed

Thompson, James M; Sgourakis, Nikolaos G; Liu, Gaohua; Rossi, Paolo; Tang, Yuefeng; Mills, Jeffrey L; Szyperski, Thomas; Montelione, Gaetano T; Baker, David

2012-06-19

While information from homologous structures plays a central role in X-ray structure determination by molecular replacement, such information is rarely used in NMR structure determination because it can be incorrect, both locally and globally, when evolutionary relationships are inferred incorrectly or there has been considerable evolutionary structural divergence. Here we describe a method that allows robust modeling of protein structures of up to 225 residues by combining (1)H(N), (13)C, and (15)N backbone and (13)Cβ chemical shift data, distance restraints derived from homologous structures, and a physically realistic all-atom energy function. Accurate models are distinguished from inaccurate models generated using incorrect sequence alignments by requiring that (i) the all-atom energies of models generated using the restraints are lower than models generated in unrestrained calculations and (ii) the low-energy structures converge to within 2.0 Å backbone rmsd over 75% of the protein. Benchmark calculations on known structures and blind targets show that the method can accurately model protein structures, even with very remote homology information, to a backbone rmsd of 1.2-1.9 Å relative to the conventional determined NMR ensembles and of 0.9-1.6 Å relative to X-ray structures for well-defined regions of the protein structures. This approach facilitates the accurate modeling of protein structures using backbone chemical shift data without need for side-chain resonance assignments and extensive analysis of NOESY cross-peak assignments.

The impact of resolution on the dynamics of the martian global atmosphere: Varying resolution studies with the MarsWRF GCM

NASA Astrophysics Data System (ADS)

Toigo, Anthony D.; Lee, Christopher; Newman, Claire E.; Richardson, Mark I.

2012-09-01

We investigate the sensitivity of the circulation and thermal structure of the martian atmosphere to numerical model resolution in a general circulation model (GCM) using the martian implementation (MarsWRF) of the planetWRF atmospheric model. We provide a description of the MarsWRF GCM and use it to study the global atmosphere at horizontal resolutions from 7.5° × 9° to 0.5° × 0.5°, encompassing the range from standard Mars GCMs to global mesoscale modeling. We find that while most of the gross-scale features of the circulation (the rough location of jets, the qualitative thermal structure, and the major large-scale features of the surface level winds) are insensitive to horizontal resolution over this range, several major features of the circulation are sensitive in detail. The northern winter polar circulation shows the greatest sensitivity, showing a continuous transition from a smooth polar winter jet at low resolution, to a distinct vertically “split” jet as resolution increases. The separation of the lower and middle atmosphere polar jet occurs at roughly 10 Pa, with the split jet structure developing in concert with the intensification of meridional jets at roughly 10 Pa and above 0.1 Pa. These meridional jets appear to represent the separation of lower and middle atmosphere mean overturning circulations (with the former being consistent with the usual concept of the “Hadley cell”). Further, the transition in polar jet structure is more sensitive to changes in zonal than meridional horizontal resolution, suggesting that representation of small-scale wave-mean flow interactions is more important than fine-scale representation of the meridional thermal gradient across the polar front. Increasing the horizontal resolution improves the match between the modeled thermal structure and the Mars Climate Sounder retrievals for northern winter high latitudes. While increased horizontal resolution also improves the simulation of the northern high latitudes at equinox, even the lowest model resolution considered here appears to do a good job for the southern winter and southern equinoctial pole (although in detail some discrepancies remain). These results suggest that studies of the northern winter jet (e.g., transient waves and cyclogenesis) will be more sensitive to global model resolution that those of the south (e.g., the confining dynamics of the southern polar vortex relevant to studies of argon transport). For surface winds, the major effect of increased horizontal resolution is in the superposition of circulations forced by local-scale topography upon the large-scale surface wind patterns. While passive predictions of dust lifting are generally insensitive to model horizontal resolution when no lifting threshold is considered, increasing the stress threshold produces significantly more lifting in higher resolution simulations with the generation of finer-scale, higher-stress winds due primarily to better-resolved topography. Considering the positive feedbacks expected for radiatively active dust lifting, we expect this bias to increase when such feedbacks are permitted.

0-2 Ma Paleomagnetic Field Behavior from Lava Flow Data Sets

NASA Astrophysics Data System (ADS)

Johnson, C. L.; Constable, C.; Tauxe, L.; Cromwell, G.

2010-12-01

The global time-averaged (TAF) structure of the paleomagnetic field and paleosecular variation (PSV) provide important constraints for numerical geodynamo simulations. Studies of the TAF have sought to characterize the nature of non-geocentric-axial dipole contributions to the field, in particular any such contributions that may be diagnostic of the influence of core-mantle boundary conditions on field generation. Similarly geographical variations in PSV are of interest, in particular the long-standing debate concerning anomalously low VGP (virtual geomagnetic pole) dispersion at Hawaii. Here, we analyze updated global directional data sets from lava flows. We present global models for the time-averaged field for the Brunhes and Matuyama epochs. New TAF models based on lava flow directional data for the Brunhes show longitudinal structure. In particular, high latitude flux lobes are observed, constrained by improved data sets from N. and S. America, Japan, and New Zealand. Anomalous TAF structure is also observed in the region around Hawaii. At Hawaii, previous inferences of the anomalous TAF (large inclination anomaly) and PSV (low VGP dispersion) have been argued to be the result of temporal sampling bias toward young flows. We use resampling techniques to examine possible biases in the TAF and PSV incurred by uneven temporal sampling. Resampling of the paleodirectional data onto a uniform temporal distribution, incorporating site ages and age errors leads to a TAF estimate for the Brunhes that is close to that reported for the actual data set, but an estimate for VGP dispersion that is increased relative to that obtained from the unevenly sampled data. Future investigations will incorporate the temporal resampling procedures into TAF modeling efforts, as well as recent progress in modeling the 0-2 Ma paleomagnetic dipole moment.

Langley's CSI evolutionary model: Phase O

NASA Technical Reports Server (NTRS)

Belvin, W. Keith; Elliott, Kenny B.; Horta, Lucas G.; Bailey, Jim P.; Bruner, Anne M.; Sulla, Jeffrey L.; Won, John; Ugoletti, Roberto M.

1991-01-01

A testbed for the development of Controls Structures Interaction (CSI) technology to improve space science platform pointing is described. The evolutionary nature of the testbed will permit the study of global line-of-sight pointing in phases 0 and 1, whereas, multipayload pointing systems will be studied beginning with phase 2. The design, capabilities, and typical dynamic behavior of the phase 0 version of the CSI evolutionary model (CEM) is documented for investigator both internal and external to NASA. The model description includes line-of-sight pointing measurement, testbed structure, actuators, sensors, and real time computers, as well as finite element and state space models of major components.

A predictive framework for evaluating models of semantic organization in free recall

PubMed Central

Morton, Neal W; Polyn, Sean M.

2016-01-01

Research in free recall has demonstrated that semantic associations reliably influence the organization of search through episodic memory. However, the specific structure of these associations and the mechanisms by which they influence memory search remain unclear. We introduce a likelihood-based model-comparison technique, which embeds a model of semantic structure within the context maintenance and retrieval (CMR) model of human memory search. Within this framework, model variants are evaluated in terms of their ability to predict the specific sequence in which items are recalled. We compare three models of semantic structure, latent semantic analysis (LSA), global vectors (GloVe), and word association spaces (WAS), and find that models using WAS have the greatest predictive power. Furthermore, we find evidence that semantic and temporal organization is driven by distinct item and context cues, rather than a single context cue. This finding provides important constraint for theories of memory search. PMID:28331243

Learning Parsimonious Classification Rules from Gene Expression Data Using Bayesian Networks with Local Structure.

PubMed

Lustgarten, Jonathan Lyle; Balasubramanian, Jeya Balaji; Visweswaran, Shyam; Gopalakrishnan, Vanathi

2017-03-01

The comprehensibility of good predictive models learned from high-dimensional gene expression data is attractive because it can lead to biomarker discovery. Several good classifiers provide comparable predictive performance but differ in their abilities to summarize the observed data. We extend a Bayesian Rule Learning (BRL-GSS) algorithm, previously shown to be a significantly better predictor than other classical approaches in this domain. It searches a space of Bayesian networks using a decision tree representation of its parameters with global constraints, and infers a set of IF-THEN rules. The number of parameters and therefore the number of rules are combinatorial to the number of predictor variables in the model. We relax these global constraints to a more generalizable local structure (BRL-LSS). BRL-LSS entails more parsimonious set of rules because it does not have to generate all combinatorial rules. The search space of local structures is much richer than the space of global structures. We design the BRL-LSS with the same worst-case time-complexity as BRL-GSS while exploring a richer and more complex model space. We measure predictive performance using Area Under the ROC curve (AUC) and Accuracy. We measure model parsimony performance by noting the average number of rules and variables needed to describe the observed data. We evaluate the predictive and parsimony performance of BRL-GSS, BRL-LSS and the state-of-the-art C4.5 decision tree algorithm, across 10-fold cross-validation using ten microarray gene-expression diagnostic datasets. In these experiments, we observe that BRL-LSS is similar to BRL-GSS in terms of predictive performance, while generating a much more parsimonious set of rules to explain the same observed data. BRL-LSS also needs fewer variables than C4.5 to explain the data with similar predictive performance. We also conduct a feasibility study to demonstrate the general applicability of our BRL methods on the newer RNA sequencing gene-expression data.

The Impact of Variable Phytoplankton Stoichiometry on Projections of Primary Production, Food Quality, and Carbon Uptake in the Global Ocean

NASA Astrophysics Data System (ADS)

Kwiatkowski, Lester; Aumont, Olivier; Bopp, Laurent; Ciais, Philippe

2018-04-01

Ocean biogeochemical models are integral components of Earth system models used to project the evolution of the ocean carbon sink, as well as potential changes in the physical and chemical environment of marine ecosystems. In such models the stoichiometry of phytoplankton C:N:P is typically fixed at the Redfield ratio. The observed stoichiometry of phytoplankton, however, has been shown to considerably vary from Redfield values due to plasticity in the expression of phytoplankton cell structures with different elemental compositions. The intrinsic structure of fixed C:N:P models therefore has the potential to bias projections of the marine response to climate change. We assess the importance of variable stoichiometry on 21st century projections of net primary production, food quality, and ocean carbon uptake using the recently developed Pelagic Interactions Scheme for Carbon and Ecosystem Studies Quota (PISCES-QUOTA) ocean biogeochemistry model. The model simulates variable phytoplankton C:N:P stoichiometry and was run under historical and business-as-usual scenario forcing from 1850 to 2100. PISCES-QUOTA projects similar 21st century global net primary production decline (7.7%) to current generation fixed stoichiometry models. Global phytoplankton N and P content or food quality is projected to decline by 1.2% and 6.4% over the 21st century, respectively. The largest reductions in food quality are in the oligotrophic subtropical gyres and Arctic Ocean where declines by the end of the century can exceed 20%. Using the change in the carbon export efficiency in PISCES-QUOTA, we estimate that fixed stoichiometry models may be underestimating 21st century cumulative ocean carbon uptake by 0.5-3.5% (2.0-15.1 PgC).

Screened exchange hybrid density functional for accurate and efficient structures and interaction energies.

PubMed

Brandenburg, Jan Gerit; Caldeweyher, Eike; Grimme, Stefan

2016-06-21

We extend the recently introduced PBEh-3c global hybrid density functional [S. Grimme et al., J. Chem. Phys., 2015, 143, 054107] by a screened Fock exchange variant based on the Henderson-Janesko-Scuseria exchange hole model. While the excellent performance of the global hybrid is maintained for small covalently bound molecules, its performance for computed condensed phase mass densities is further improved. Most importantly, a speed up of 30 to 50% can be achieved and especially for small orbital energy gap cases, the method is numerically much more robust. The latter point is important for many applications, e.g., for metal-organic frameworks, organic semiconductors, or protein structures. This enables an accurate density functional based electronic structure calculation of a full DNA helix structure on a single core desktop computer which is presented as an example in addition to comprehensive benchmark results.

On-the-Fly Machine Learning of Atomic Potential in Density Functional Theory Structure Optimization

NASA Astrophysics Data System (ADS)

Jacobsen, T. L.; Jørgensen, M. S.; Hammer, B.

2018-01-01

Machine learning (ML) is used to derive local stability information for density functional theory calculations of systems in relation to the recently discovered SnO2 (110 )-(4 ×1 ) reconstruction. The ML model is trained on (structure, total energy) relations collected during global minimum energy search runs with an evolutionary algorithm (EA). While being built, the ML model is used to guide the EA, thereby speeding up the overall rate by which the EA succeeds. Inspection of the local atomic potentials emerging from the model further shows chemically intuitive patterns.

In the process of drinking to cope among college students: An examination of specific vs. global coping motives for depression and anxiety symptoms.

PubMed

Bravo, Adrian J; Pearson, Matthew R

2017-10-01

The present study sought to address an issue in the drinking to cope (DTC) motives literature, namely the inconsistent application of treating DTC motives as a single construct and splitting it into DTC-depression and DTC-anxiety motives. Specifically, we aimed to determine if the effects of anxiety and depression on alcohol-related problems are best explained via their associations with DTC with specific affects or via their associations with a more global measure of DTC by testing four distinct models: the effects of anxiety/depression on alcohol-related problems mediated by DTC-anxiety only (Model 1), these effects mediated by DTC-depression only (Model 2), these effects mediated by a combined, global DTC factor (Model 3), and these effects mediated by both DTC-anxiety and DTC-depression (Model 4). Using path analysis/structural equation modeling across two independent samples, we found that there was a significant total indirect effect of both anxiety and depressive symptoms on alcohol-related problems in every model. However, there was a slightly larger indirect effect in all models using the global DTC motives factor compared to even the model that included the two distinct DTC motives. Our results provide some preliminary evidence that at least at the between-subjects level, a global DTC motives factor may have more predictive validity than separate DTC motives. Additional research is needed to examine how to best operationalize DTC motives at different levels of analysis (e.g., within-subjects vs. between subjects) and in different populations (e.g., college students vs. individuals with alcohol use disorder). Copyright © 2017. Published by Elsevier Ltd.

Representative Agricultural Pathways and Scenarios for Regional Integrated Assessment of Climate Change Impacts, Vulnerability, and Adaptation. 5; Chapter

NASA Technical Reports Server (NTRS)

Valdivia, Roberto O.; Antle, John M.; Rosenzweig, Cynthia; Ruane, Alexander C.; Vervoort, Joost; Ashfaq, Muhammad; Hathie, Ibrahima; Tui, Sabine Homann-Kee; Mulwa, Richard; Nhemachena, Charles;

Importance of vegetation distribution for future carbon balance

NASA Astrophysics Data System (ADS)

Ahlström, A.; Xia, J.; Arneth, A.; Luo, Y.; Smith, B.

2015-12-01

Projections of future terrestrial carbon uptake vary greatly between simulations. Net primary production (NPP), wild fires, vegetation dynamics (including biome shifts) and soil decomposition constitute the main processes governing the response of the terrestrial carbon cycle in a changing climate. While primary production and soil respiration are relatively well studied and implemented in all global ecosystem models used to project the future land sink of CO2, vegetation dynamics are less studied and not always represented in global models. Here we used a detailed second generation dynamic global vegetation model with advanced representation of vegetation growth and mortality and the associated turnover and proven skill in predicting vegetation distribution and succession. We apply an emulator that describes the carbon flows and pools exactly as in simulations with the full model. The emulator simulates ecosystem dynamics in response to 13 different climate or Earth system model simulations from the CMIP5 ensemble under RCP8.5 radiative forcing at year 2085. We exchanged carbon cycle processes between these 13 simulations and investigate the changes predicted by the emulator. This method allowed us to partition the entire ensemble carbon uptake uncertainty into individual processes. We found that NPP, vegetation dynamics (including biome shifts, wild fires and mortality) and soil decomposition rates explained 49%, 17% and 33% respectively of uncertainties in modeled global C-uptake. Uncertainty due to vegetation dynamics was further partitioned into stand-clearing disturbances (16%), wild fires (0%), stand dynamics (7%), reproduction (10%) and biome shifts (67%) globally. We conclude that while NPP and soil decomposition rates jointly account for 83% of future climate induced C-uptake uncertainties, vegetation turnover and structure, dominated by shifts in vegetation distribution, represent a significant fraction globally and regionally (tropical forests: 40%), strongly motivating their representation and analysis in future C-cycle studies.

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

NASA Astrophysics Data System (ADS)

Hochberg, E. J.

2016-02-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

NASA Astrophysics Data System (ADS)

Hochberg, E. J.

2015-12-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

Investigating melting induced mantle heterogeneities in plate driven mantle convection models

NASA Astrophysics Data System (ADS)

Price, M.; Davies, H.; Panton, J.

2017-12-01

Observations from geochemistry and seismology continue to suggest a range of complex heterogeneity in Earth's mantle. In the deep mantle, two large low velocity provinces (LLVPs) have been regularly observed in seismic studies, with their longevity, composition and density compared to the surrounding mantle debated. The cause of these observed LLVPs is equally uncertain, with previous studies advocating either thermal or thermo-chemical causes. There is also evidence that these structures could provide chemically distinct reservoirs within the mantle, with recent studies also suggesting there may be additional reservoirs in the mantle, such as bridgmanite-enriched ancient mantle structures (BEAMS). One way to test these hypotheses is using computational models of the mantle, with models that capture the full 3D system being both complex and computationally expensive. Here we present results from our global mantle model TERRA. Using our model, we can track compositional variations in the convecting mantle that are generated by self-consistent, evolving melting zones. Alongside the melting, we track trace elements and other volatiles which can be partitioned during melting events, and expelled and recycled at the surface. Utilising plate reconstruction models as a boundary condition, the models generate the tectonic features observed at Earth's surface, while also organising the lower mantle into recognisable degree-two structures. This results in our models generating basaltic `oceanic' crusts which are then brought into the mantle at tectonic boundaries, providing additional chemical heterogeneity in the mantle volume. Finally, by utilising thermodynamic lookup tables to convert the final outputs from the model to seismic structures, together with resolution filters for global tomography models, we are able to make direct comparisons between our results and observations. By varying the parameters of the model, we investigate a range of current hypotheses for heterogeneity in the mantle. Our work attempts to reconcile the many proposed current ideas for the deep mantle, giving additional insight from modelling on the latest observations from other Deep Earth disciplines.

A short generic measure of work stress in the era of globalization: effort-reward imbalance.

PubMed

Siegrist, Johannes; Wege, Natalia; Pühlhofer, Frank; Wahrendorf, Morten

2009-08-01

We evaluate psychometric properties of a short version of the original effort-reward imbalance (ERI) questionnaire. This measure is of interest in the context of assessing stressful work conditions in the era of economic globalization. In a representative sample of 10,698 employed men and women participating in the longitudinal Socio-Economic Panel (SOEP) in Germany, a short version of the ERI questionnaire was included in the 2006 panel wave. Structural equation modeling and logistic regression analysis were applied. In addition to satisfactory internal consistency of scales, a model representing the theoretical structure of the scales provided the best data fit in a competitive test (RMSEA = 0.059, CAIC = 4124.19). Scoring high on the ERI scales was associated with elevated risks of poor self-rated health. This short version of the ERI questionnaire reveals satisfactory psychometric properties, and can be recommended for further use in research and practice.

SURFEX v8.0 interface with OASIS3-MCT to couple atmosphere with hydrology, ocean, waves and sea-ice models, from coastal to global scales

NASA Astrophysics Data System (ADS)

Voldoire, Aurore; Decharme, Bertrand; Pianezze, Joris; Lebeaupin Brossier, Cindy; Sevault, Florence; Seyfried, Léo; Garnier, Valérie; Bielli, Soline; Valcke, Sophie; Alias, Antoinette; Accensi, Mickael; Ardhuin, Fabrice; Bouin, Marie-Noëlle; Ducrocq, Véronique; Faroux, Stéphanie; Giordani, Hervé; Léger, Fabien; Marsaleix, Patrick; Rainaud, Romain; Redelsperger, Jean-Luc; Richard, Evelyne; Riette, Sébastien

2017-11-01

This study presents the principles of the new coupling interface based on the SURFEX multi-surface model and the OASIS3-MCT coupler. As SURFEX can be plugged into several atmospheric models, it can be used in a wide range of applications, from global and regional coupled climate systems to high-resolution numerical weather prediction systems or very fine-scale models dedicated to process studies. The objective of this development is to build and share a common structure for the atmosphere-surface coupling of all these applications, involving on the one hand atmospheric models and on the other hand ocean, ice, hydrology, and wave models. The numerical and physical principles of SURFEX interface between the different component models are described, and the different coupled systems in which the SURFEX OASIS3-MCT-based coupling interface is already implemented are presented.

Structure and Reversibility of 2D von Neumann Cellular Automata Over Triangular Lattice

NASA Astrophysics Data System (ADS)

Uguz, Selman; Redjepov, Shovkat; Acar, Ecem; Akin, Hasan

2017-06-01

Even though the fundamental main structure of cellular automata (CA) is a discrete special model, the global behaviors at many iterative times and on big scales could be a close, nearly a continuous, model system. CA theory is a very rich and useful phenomena of dynamical model that focuses on the local information being relayed to the neighboring cells to produce CA global behaviors. The mathematical points of the basic model imply the computable values of the mathematical structure of CA. After modeling the CA structure, an important problem is to be able to move forwards and backwards on CA to understand their behaviors in more elegant ways. A possible case is when CA is to be a reversible one. In this paper, we investigate the structure and the reversibility of two-dimensional (2D) finite, linear, triangular von Neumann CA with null boundary case. It is considered on ternary field ℤ3 (i.e. 3-state). We obtain their transition rule matrices for each special case. For given special triangular information (transition) rule matrices, we prove which triangular linear 2D von Neumann CAs are reversible or not. It is known that the reversibility cases of 2D CA are generally a much challenged problem. In the present study, the reversibility problem of 2D triangular, linear von Neumann CA with null boundary is resolved completely over ternary field. As far as we know, there is no structure and reversibility study of von Neumann 2D linear CA on triangular lattice in the literature. Due to the main CA structures being sufficiently simple to investigate in mathematical ways, and also very complex to obtain in chaotic systems, it is believed that the present construction can be applied to many areas related to these CA using any other transition rules.

Design, analysis, and applications of cellular contact-aided compliant mechanisms

NASA Astrophysics Data System (ADS)

Mehta, Vipul

A new class of compliant mechanisms utilizing the benefits of cellular geometry and contact are addressed in this work. The design, analysis, fabrication and testing of such structures for high-strain and high-strength applications is the focus of the present research. Cellular structures have relatively good strength-to-weight ratios. They also have a higher strain capability than solid structures. Contact during deformation reduces failure-causing bending stresses through stress relief, thereby enabling such cellular structures to be stretched more than the corresponding structures without contact. Both analytical and numerical models are developed to represent one specific mechanism. Several candidate materials are investigated for such mechanisms. Although the allowable strain of all these materials is small, the overall strain of the contact-aided cellular mechanisms is at least an order of magnitude greater than that of the constitutive material. Application of contact to different materials yields an improvement in the global strain capacity by more than 100% relative to cellular structures without contact. Experiments are conducted to validate the models, and good agreement is found. Size optimization is carried out to maximize the stress relief and the overall strain. Two main applications are considered in the present work. One application consists of a morphing aircraft skin for adaptive structures. Different material models such as linearly elastic and multi-linear elastic are examined. For linearly elastic materials, contact-induced stress-relief is advantageous and for nonlinear elastic materials, reduction of transverse deflection due to contact is useful. The proposed contact-aided skin structure is compared with a cellular skin without contact. The contact mechanism helps to increase the morphing capacity while decreasing the structural mass. Using contact-aided cellular mechanisms, the global strain capability is increased by as much as 37%. For a fixed global strain, the optimum contact-aided structure is 15% lighter than an optimum non-contact structure. Another application involves investigation of meso-scaled cellular structures. Two different materials are considered---nanoparticulate zirconia and particulate stainless steel. The lost mold rapid infiltration forming process is utilized to fabricate free standing cellular mechanisms. The analytical model is employed to address the tradeoffs between the manufacturing constraints and to design suitable contact-aided cellular mechanisms. A custom rig is developed to test these meso-scaled parts. Force displacement characteristics are experimentally obtained and compared against those found using the analytical model. Topology optimization tools are applied to the design of compliant cellular mechanisms with and without a contact mechanism. A two-step procedure is developed. For cellular structures without contact, an inverse homogenization method is employed. The compliant mechanism is optimized to yield prescribed elasticity coefficients and achieve a large effective elastic strain. To implement a contact mechanism in the second step, the continuum model of a non-contact structure is converted into a frame model. Only the non-overlapping designs are investigated exhaustively for stress relief. A differential evolution optimizer is used to maximize the stress relief. Four cell topologies are found for different effective properties corresponding to different structural requirements. For each such topology, a contact mechanism is devised that demonstrates stress relief. One such topology resulted a stress relief as high as 36%.

Airport Flight Departure Delay Model on Improved BN Structure Learning

NASA Astrophysics Data System (ADS)

Cao, Weidong; Fang, Xiangnong

An high score prior genetic simulated annealing Bayesian network structure learning algorithm (HSPGSA) by combining genetic algorithm(GA) with simulated annealing algorithm(SAA) is developed. The new algorithm provides not only with strong global search capability of GA, but also with strong local hill climb search capability of SAA. The structure with the highest score is prior selected. In the mean time, structures with lower score are also could be choice. It can avoid efficiently prematurity problem by higher score individual wrong direct growing population. Algorithm is applied to flight departure delays analysis in a large hub airport. Based on the flight data a BN model is created. Experiments show that parameters learning can reflect departure delay.

AxiSEM3D: a new fast method for global wave propagation in 3-D Earth models with undulating discontinuities

NASA Astrophysics Data System (ADS)

Leng, K.; Nissen-Meyer, T.; van Driel, M.; Al-Attar, D.

2016-12-01

We present a new, computationally efficient numerical method to simulate global seismic wave propagation in realistic 3-D Earth models with laterally heterogeneous media and finite boundary perturbations. Our method is a hybrid of pseudo-spectral and spectral element methods (SEM). We characterize the azimuthal dependence of 3-D wavefields in terms of Fourier series, such that the 3-D equations of motion reduce to an algebraic system of coupled 2-D meridional equations, which can be solved by a 2-D spectral element method (based on www.axisem.info). Computational efficiency of our method stems from lateral smoothness of global Earth models (with respect to wavelength) as well as axial singularity of seismic point sources, which jointly confine the Fourier modes of wavefields to a few lower orders. All boundary perturbations that violate geometric spherical symmetry, including Earth's ellipticity, topography and bathymetry, undulations of internal discontinuities such as Moho and CMB, are uniformly considered by means of a Particle Relabeling Transformation.The MPI-based high performance C++ code AxiSEM3D, is now available for forward simulations upon 3-D Earth models with fluid outer core, ellipticity, and both mantle and crustal structures. We show novel benchmarks for global wave solutions in 3-D mantle structures between our method and an independent, fully discretized 3-D SEM with remarkable agreement. Performance comparisons are carried out on three state-of-the-art tomography models, with seismic period going down to 5s. It is shown that our method runs up to two orders of magnitude faster than the 3-D SEM for such settings, and such computational advantage scales favourably with seismic frequency. By examining wavefields passing through hypothetical Gaussian plumes of varying sharpness, we identify in model-wavelength space the limits where our method may lose its advantage.

Description of the University of Auckland Global Mars Mesoscale Meteorological Model (GM4)

NASA Astrophysics Data System (ADS)

Wing, D. R.; Austin, G. L.

2005-08-01

The University of Auckland Global Mars Mesoscale Meteorological Model (GM4) is a numerical weather prediction model of the Martian atmosphere that has been developed through the conversion of the Penn State University / National Center for Atmospheric Research fifth generation mesoscale model (MM5). The global aspect of this model is self consistent, overlapping, and forms a continuous domain around the entire planet, removing the need to provide boundary conditions other than at initialisation, yielding independence from the constraint of a Mars general circulation model. The brief overview of the model will be given, outlining the key physical processes and setup of the model. Comparison between data collected from Mars Pathfinder during its 1997 mission and simulated conditions using GM4 have been performed. Diurnal temperature variation as predicted by the model shows very good correspondence with the surface truth data, to within 5 K for the majority of the diurnal cycle. Mars Viking Data is also compared with the model, with good agreement. As a further means of validation for the model, various seasonal comparisons of surface and vertical atmospheric structure are conducted with the European Space Agency AOPP/LMD Mars Climate Database. Selected simulations over regions of interest will also be presented.

Shaking table experimentation on adjacent structures controlled by passive and semi-active MR dampers

NASA Astrophysics Data System (ADS)

Basili, M.; De Angelis, M.; Fraraccio, G.

2013-06-01

This paper presents the results of shaking table tests on adjacent structures controlled by passive and semi-active MR dampers. The aim was to demonstrate experimentally the effectiveness of passive and semi-active strategies in reducing structural vibrations due to seismic excitation. The physical model at issue was represented by two adjacent steel structures, respectively of 4 and 2 levels, connected at the second level by a MR damper. When the device operated in semi-active mode, an ON-OFF control algorithm, derived by the Lyapunov stability theory, was implemented and experimentally validated. Since the experimentation concerned adjacent structures, two control objectives have been reached: global and selective protection. In case of global protection, the attention was focused on protecting both structures, whereas, in case of selective protection, the attention was focused on protecting only one structure. For each objective the effectiveness of passive control has been compared with the situation of no control and then the effectiveness of semi-active control has been compared with the passive one. The quantities directly compared have been: measured displacements, accelerations and force-displacement of the MR damper, moreover some global response quantities have been estimated from experimental measures, which are the base share force and the base bending moment, the input energy and the energy dissipated by the device. In order to evaluate the effectiveness of the control action in both passive and semi-active case, an energy index EDI, previously defined and already often applied numerically, has been utilized. The aspects investigated in the experimentation have been: the implementation and validation of the control algorithm for selective and global protection, the MR damper input voltage influence, the kind of seismic input and its intensity.

Providing Context for Complexity: Using Infographics and Conceptual Models to Teach Global Change Processes

NASA Astrophysics Data System (ADS)

Bean, J. R.; White, L. D.

2015-12-01

Understanding modern and historical global changes requires interdisciplinary knowledge of the physical and life sciences. The Understanding Global Change website from the UC Museum of Paleontology will use a focal infographic that unifies diverse content often taught in separate K-12 science units. This visualization tool provides scientists with a structure for presenting research within the broad context of global change, and supports educators with a framework for teaching and assessing student understanding of complex global change processes. This new approach to teaching the science of global change is currently being piloted and refined based on feedback from educators and scientists in anticipation of a 2016 website launch. Global change concepts are categorized within the infographic as causes of global change (e.g., burning of fossil fuels, volcanism), ongoing Earth system processes (e.g., ocean circulation, the greenhouse effect), and the changes scientists measure in Earth's physical and biological systems (e.g., temperature, extinctions/radiations). The infographic will appear on all website content pages and provides a template for the creation of flowcharts, which are conceptual models that allow teachers and students to visualize the interdependencies and feedbacks among processes in the atmosphere, hydrosphere, biosphere, and geosphere. The development of this resource is timely given that the newly adopted Next Generation Science Standards emphasize cross-cutting concepts, including model building, and Earth system science. Flowchart activities will be available on the website to scaffold inquiry-based lessons, determine student preconceptions, and assess student content knowledge. The infographic has already served as a learning and evaluation tool during professional development workshops at UC Berkeley, Stanford University, and the Smithsonian National Museum of Natural History. At these workshops, scientists and educators used the infographic to highlight how their research and activities reinforce conceptual links among global change topics. Pre- and post-workshop assessment results and responses to questionnaires have guided the refinement of classroom activities and assessment tools utilizing flowcharts as models for global change processes.

Carbon fluxes in tropical forest ecosystems: the value of Eddy-covariance data for individual-based dynamic forest gap models

NASA Astrophysics Data System (ADS)

Roedig, Edna; Cuntz, Matthias; Huth, Andreas

2015-04-01

The effects of climatic inter-annual fluctuations and human activities on the global carbon cycle are uncertain and currently a major issue in global vegetation models. Individual-based forest gap models, on the other hand, model vegetation structure and dynamics on a small spatial (<100 ha) and large temporal scale (>1000 years). They are well-established tools to reproduce successions of highly-diverse forest ecosystems and investigate disturbances as logging or fire events. However, the parameterizations of the relationships between short-term climate variability and forest model processes are often uncertain in these models (e.g. daily variable temperature and gross primary production (GPP)) and cannot be constrained from forest inventories. We addressed this uncertainty and linked high-resolution Eddy-covariance (EC) data with an individual-based forest gap model. The forest model FORMIND was applied to three diverse tropical forest sites in the Amazonian rainforest. Species diversity was categorized into three plant functional types. The parametrizations for the steady-state of biomass and forest structure were calibrated and validated with different forest inventories. The parameterizations of relationships between short-term climate variability and forest model processes were evaluated with EC-data on a daily time step. The validations of the steady-state showed that the forest model could reproduce biomass and forest structures from forest inventories. The daily estimations of carbon fluxes showed that the forest model reproduces GPP as observed by the EC-method. Daily fluctuations of GPP were clearly reflected as a response to daily climate variability. Ecosystem respiration remains a challenge on a daily time step due to a simplified soil respiration approach. In the long-term, however, the dynamic forest model is expected to estimate carbon budgets for highly-diverse tropical forests where EC-measurements are rare.

Global modeling of thermospheric airglow in the far ultraviolet

NASA Astrophysics Data System (ADS)

Solomon, Stanley C.

2017-07-01

The Global Airglow (GLOW) model has been updated and extended to calculate thermospheric emissions in the far ultraviolet, including sources from daytime photoelectron-driven processes, nighttime recombination radiation, and auroral excitation. It can be run using inputs from empirical models of the neutral atmosphere and ionosphere or from numerical general circulation models of the coupled ionosphere-thermosphere system. It uses a solar flux module, photoelectron generation routine, and the Nagy-Banks two-stream electron transport algorithm to simultaneously handle energetic electron distributions from photon and auroral electron sources. It contains an ion-neutral chemistry module that calculates excited and ionized species densities and the resulting airglow volume emission rates. This paper describes the inputs, algorithms, and code structure of the model and demonstrates example outputs for daytime and auroral cases. Simulations of far ultraviolet emissions by the atomic oxygen doublet at 135.6 nm and the molecular nitrogen Lyman-Birge-Hopfield bands, as viewed from geostationary orbit, are shown, and model calculations are compared to limb-scan observations by the Global Ultraviolet Imager on the TIMED satellite. The GLOW model code is provided to the community through an open-source academic research license.

Build your own soil: exploring microfluidics to create microbial habitat structures

PubMed Central

Aleklett, Kristin; Kiers, E Toby; Ohlsson, Pelle; Shimizu, Thomas S; Caldas, Victor EA; Hammer, Edith C

2018-01-01

Soil is likely the most complex ecosystem on earth. Despite the global importance and extraordinary diversity of soils, they have been notoriously challenging to study. We show how pioneering microfluidic techniques provide new ways of studying soil microbial ecology by allowing simulation and manipulation of chemical conditions and physical structures at the microscale in soil model habitats. PMID:29135971

Development of vehicle model test-bending of a simple structural surfaces model for automotive vehicle sedan

NASA Astrophysics Data System (ADS)

Nor, M. K. Mohd; Noordin, A.; Ruzali, M. F. S.; Hussen, M. H.; Mustapa@Othman, N.

2017-04-01

Simple Structural Surfaces (SSS) method is offered as a means of organizing the process for rationalizing the basic vehicle body structure load paths. The application of this simplified approach is highly beneficial in the development of modern passenger car structure design. In Malaysia, the SSS topic has been widely adopted and seems compulsory in various automotive programs related to automotive vehicle structures in many higher education institutions. However, there is no real physical model of SSS available to gain considerable insight and understanding into the function of each major subassembly in the whole vehicle structures. Based on this motivation, a real physical SSS of sedan model and the corresponding model vehicle tests of bending is proposed in this work. The proposed approach is relatively easy to understand as compared to Finite Element Method (FEM). The results prove that the proposed vehicle model test is useful to physically demonstrate the importance of providing continuous load path using the necessary structural components within the vehicle structures. It is clearly observed that the global bending stiffness reduce significantly when more panels are removed from the complete SSS model. The analysis shows the front parcel shelf is an important subassembly to sustain bending load.

Emergence of scale-free close-knit friendship structure in online social networks.

PubMed

Cui, Ai-Xiang; Zhang, Zi-Ke; Tang, Ming; Hui, Pak Ming; Fu, Yan

2012-01-01

Although the structural properties of online social networks have attracted much attention, the properties of the close-knit friendship structures remain an important question. Here, we mainly focus on how these mesoscale structures are affected by the local and global structural properties. Analyzing the data of four large-scale online social networks reveals several common structural properties. It is found that not only the local structures given by the indegree, outdegree, and reciprocal degree distributions follow a similar scaling behavior, the mesoscale structures represented by the distributions of close-knit friendship structures also exhibit a similar scaling law. The degree correlation is very weak over a wide range of the degrees. We propose a simple directed network model that captures the observed properties. The model incorporates two mechanisms: reciprocation and preferential attachment. Through rate equation analysis of our model, the local-scale and mesoscale structural properties are derived. In the local-scale, the same scaling behavior of indegree and outdegree distributions stems from indegree and outdegree of nodes both growing as the same function of the introduction time, and the reciprocal degree distribution also shows the same power-law due to the linear relationship between the reciprocal degree and in/outdegree of nodes. In the mesoscale, the distributions of four closed triples representing close-knit friendship structures are found to exhibit identical power-laws, a behavior attributed to the negligible degree correlations. Intriguingly, all the power-law exponents of the distributions in the local-scale and mesoscale depend only on one global parameter, the mean in/outdegree, while both the mean in/outdegree and the reciprocity together determine the ratio of the reciprocal degree of a node to its in/outdegree. Structural properties of numerical simulated networks are analyzed and compared with each of the four real networks. This work helps understand the interplay between structures on different scales in online social networks.

Emergence of Scale-Free Close-Knit Friendship Structure in Online Social Networks

PubMed Central

Cui, Ai-Xiang; Zhang, Zi-Ke; Tang, Ming; Hui, Pak Ming; Fu, Yan

2012-01-01

Although the structural properties of online social networks have attracted much attention, the properties of the close-knit friendship structures remain an important question. Here, we mainly focus on how these mesoscale structures are affected by the local and global structural properties. Analyzing the data of four large-scale online social networks reveals several common structural properties. It is found that not only the local structures given by the indegree, outdegree, and reciprocal degree distributions follow a similar scaling behavior, the mesoscale structures represented by the distributions of close-knit friendship structures also exhibit a similar scaling law. The degree correlation is very weak over a wide range of the degrees. We propose a simple directed network model that captures the observed properties. The model incorporates two mechanisms: reciprocation and preferential attachment. Through rate equation analysis of our model, the local-scale and mesoscale structural properties are derived. In the local-scale, the same scaling behavior of indegree and outdegree distributions stems from indegree and outdegree of nodes both growing as the same function of the introduction time, and the reciprocal degree distribution also shows the same power-law due to the linear relationship between the reciprocal degree and in/outdegree of nodes. In the mesoscale, the distributions of four closed triples representing close-knit friendship structures are found to exhibit identical power-laws, a behavior attributed to the negligible degree correlations. Intriguingly, all the power-law exponents of the distributions in the local-scale and mesoscale depend only on one global parameter, the mean in/outdegree, while both the mean in/outdegree and the reciprocity together determine the ratio of the reciprocal degree of a node to its in/outdegree. Structural properties of numerical simulated networks are analyzed and compared with each of the four real networks. This work helps understand the interplay between structures on different scales in online social networks. PMID:23272067

The structure and rainfall features of Tropical Cyclone Rammasun (2002)

NASA Astrophysics Data System (ADS)

Ma, Leiming; Duan, Yihong; Zhu, Yongti

2004-12-01

Tropical Rainfall Measuring Mission (TRMM) data [TRMM Microwave Imager/Precipitation Radar/Visible and Infrared Scanner (TMI/PR/VIRS)] and a numerical model are used to investigate the structure and rainfall features of Tropical Cyclone (TC) Rammasun (2002). Based on the analysis of TRMM data, which are diagnosed together with NCEP/AVN [Aviation (global model)] analysis data, some typical features of TC structure and rainfall are preliminary discovered. Since the limitations of TRMM data are considered for their time resolution and coverage, the world observed by TRMM at several moments cannot be taken as the representation of the whole period of the TC lifecycle, therefore the picture should be reproduced by a numerical model of high quality. To better understand the structure and rainfall features of TC Rammasun, a numerical simulation is carried out with mesoscale model MM5 in which the validations have been made with the data of TRMM and NCEP/AVN analysis.

Symmetric tridiagonal structure preserving finite element model updating problem for the quadratic model

NASA Astrophysics Data System (ADS)

Rakshit, Suman; Khare, Swanand R.; Datta, Biswa Nath

2018-07-01

One of the most important yet difficult aspect of the Finite Element Model Updating Problem is to preserve the finite element inherited structures in the updated model. Finite element matrices are in general symmetric, positive definite (or semi-definite) and banded (tridiagonal, diagonal, penta-diagonal, etc.). Though a large number of papers have been published in recent years on various aspects of solutions of this problem, papers dealing with structure preservation almost do not exist. A novel optimization based approach that preserves the symmetric tridiagonal structures of the stiffness and damping matrices is proposed in this paper. An analytical expression for the global minimum solution of the associated optimization problem along with the results of numerical experiments obtained by both the analytical expressions and by an appropriate numerical optimization algorithm are presented. The results of numerical experiments support the validity of the proposed method.

Earth survey applications division: Research leading to the effective use of space technology in applications relating to the Earth's surface and interior

NASA Technical Reports Server (NTRS)

Carpenter, L. (Editor)

1980-01-01

Accomplishments and future plans are described for the following areas: (1) geology - geobotanical indicators and geopotential data; (2) modeling magnetic fields; (3) modeling the structure, composition, and evolution of the Earth's crust; (4) global and regional motions of the Earth's crust and earthquake occurrence; (5) modeling geopotential from satellite tracking data; (6) modeling the Earth's gravity field; (7) global Earth dynamics; (8) sea surface topography, ocean dynamics; and geophysical interpretation; (9) land cover and land use; (10) physical and remote sensing attributes important in detecting, measuring, and monitoring agricultural crops; (11) prelaunch studies using LANDSAT D; (12) the multispectral linear array; (13) the aircraft linear array pushbroom radiometer; and (14) the spaceborne laser ranging system.

Multiple model self-tuning control for a class of nonlinear systems

NASA Astrophysics Data System (ADS)

Huang, Miao; Wang, Xin; Wang, Zhenlei

2015-10-01

This study develops a novel nonlinear multiple model self-tuning control method for a class of nonlinear discrete-time systems. An increment system model and a modified robust adaptive law are proposed to expand the application range, thus eliminating the assumption that either the nonlinear term of the nonlinear system or its differential term is global-bounded. The nonlinear self-tuning control method can address the situation wherein the nonlinear system is not subject to a globally uniformly asymptotically stable zero dynamics by incorporating the pole-placement scheme. A novel, nonlinear control structure based on this scheme is presented to improve control precision. Stability and convergence can be confirmed when the proposed multiple model self-tuning control method is applied. Furthermore, simulation results demonstrate the effectiveness of the proposed method.

Continental scale data assimilation of discharge and its effect on flow predictions

NASA Astrophysics Data System (ADS)

Weerts, Albrecht; Schellekens, Jaap; van Dijk, Albert

2017-04-01

Floods are the most frequent of natural disasters, affecting millions of people across the globe every year. The anticipation and forecasting of floods at the global scale is crucial to preparing for severe events and providing early awareness where local flood models and warning services may not exist (Emmerton et al., 2016). Current global flood forecasting system heavily rely on forecast forcing (precipitation, temperature, reference potential evaporation) to derive initial state estimates of the hydrological model for the next forecast (e.g. by glueing the first day of subsequent forecast as proxy for the historical observed forcing). It is clear that this approach is not perfect and that data assimilation can help to overcome some of the weaknesses of this approach. So far most hydrologic da studies have focused mostly on catchment scale. Here we conduct a da experiment by assimilating multiple streamflow observations across the contiguous united states (CONUS) and Europe into a global hydrological model (W3RA) and run with and without localization method using OpenDA in the global flood forecasting information system (GLOFFIS). It is shown that assimilation of streamflow holds considerable potential for improving global scale flood forecasting (improving NSE scores from 0 to 0.7 and beyond). Weakness in the model (e.g. structural problems and missing processes) and forcing that influence the performance will be highlighted.

Continental scale data assimilation of discharge and its effect on flow predictions across the contiguous US (CONUS)

NASA Astrophysics Data System (ADS)

Weerts, A.; Schellekens, J.; van Dijk, A.; Molenaar, R.

2016-12-01

Floods are the most frequent of natural disasters, affecting millions of people across the globe every year. The anticipation and forecasting of floods at the global scale is crucial to preparing for severe events and providing early awareness where local flood models and warning services may not exist (Emmerton et al., 2016). Current global flood forecasting system heavily rely on forecast forcing (precipitation, temperature, reference potential evaporation) to derive initial state estimates of the hydrological model for the next forecast (e.g. by glueing the first day of subsequent forecast as proxy for the historical observed forcing). It is clear that this approach is not perfect and that data assimilation can help to overcome some of the weaknesses of this approach. So far most hydrologic da studies have focused mostly on catchment scale. Here we conduct a da experiment by assimilating multiple streamflow observations across the contiguous united states (CONUS) into a global hydrological model (W3RA) and run with and without localization method using OpenDA in the global flood forecasting information system (GLOFFIS). It is shown that assimilation of streamflow holds considerable potential for improving global scale flood forecasting (improving NSE scores from 0 to 0.7 and beyond). Weakness in the model (e.g. structural problems and missing processes) and forcing that influence the performance will be highlighted.

Predicting RNA 3D structure using a coarse-grain helix-centered model

PubMed Central

Kerpedjiev, Peter; Höner zu Siederdissen, Christian; Hofacker, Ivo L.

2015-01-01

A 3D model of RNA structure can provide information about its function and regulation that is not possible with just the sequence or secondary structure. Current models suffer from low accuracy and long running times and either neglect or presume knowledge of the long-range interactions which stabilize the tertiary structure. Our coarse-grained, helix-based, tertiary structure model operates with only a few degrees of freedom compared with all-atom models while preserving the ability to sample tertiary structures given a secondary structure. It strikes a balance between the precision of an all-atom tertiary structure model and the simplicity and effectiveness of a secondary structure representation. It provides a simplified tool for exploring global arrangements of helices and loops within RNA structures. We provide an example of a novel energy function relying only on the positions of stems and loops. We show that coupling our model to this energy function produces predictions as good as or better than the current state of the art tools. We propose that given the wide range of conformational space that needs to be explored, a coarse-grain approach can explore more conformations in less iterations than an all-atom model coupled to a fine-grain energy function. Finally, we emphasize the overarching theme of providing an ensemble of predicted structures, something which our tool excels at, rather than providing a handful of the lowest energy structures. PMID:25904133

A new, accurate, global hydrography data for remote sensing and modelling of river hydrodynamics

NASA Astrophysics Data System (ADS)

Yamazaki, D.

2017-12-01

A high-resolution hydrography data is an important baseline data for remote sensing and modelling of river hydrodynamics, given the spatial scale of river network is much smaller than that of land hydrology or atmosphere/ocean circulations. For about 10 years, HydroSHEDS, developed based on the SRTM3 DEM, has been the only available global-scale hydrography data. However, the data availability at the time of HydroSHEDS development limited the quality of the represented river networks. Here, we developed a new global hydrography data using latest geodata such as the multi-error-removed elevation data (MERIT DEM), Landsat-based global water body data (GSWO & G3WBM), cloud-sourced open geography database (OpenStreetMap). The new hydrography data covers the entire globe (including boreal regions above 60N), and it represents more detailed structure of the world river network and contains consistent supplementary data layers such as hydrologically adjusted elevations and river channel width. In the AGU meeting, the developing methodology, assessed quality, and potential applications of the new global hydrography data will be introduced.

The Global Fund to Fight AIDS, Tuberculosis and Malaria: 10 years on.

PubMed

Hanefeld, Johanna

2014-02-01

The Global Fund to Fight AIDS, Tuberculosis and Malaria (the Global Fund or GFATM) is a private public partnership aimed at leveraging and providing funding for the three focal diseases outlined in its title. Set up in 2002, the fund was part of a new 'breed' of players in the field of global health, combining skills from bilateral and multilateral agencies with private sector and civil society. Highly innovative in its structure and funding model, the Global Fund's secretariat in Geneva provides grants directly to one or more organisations - not just governments - in recipient countries. Despite great successes, including scaling up treatment for AIDS to reach 4.2 million people, the fund has been the subject of intense debate. This includes discussion of its impact on health systems and allegations of financial irregularities among recipients in four countries. The organisation has now emerged with a new strategy, funding model and executive director. This paper charts its history, discusses some of the challenges faced, drawing on fieldwork conducted by the author in 2007-08, and reflects on recent changes and the road ahead.

An anatomy of the projected North Atlantic warming hole in CMIP5 models

NASA Astrophysics Data System (ADS)

Menary, Matthew B.; Wood, Richard A.

2018-04-01

Global mean surface air temperature has increased over the past century and climate models project this trend to continue. However, the pattern of change is not homogeneous. Of particular interest is the subpolar North Atlantic, which has cooled in recent years and is projected to continue to warm less rapidly than the global mean. This is often termed the North Atlantic warming hole (WH). In climate model projections, the development of the WH is concomitant with a weakening of the Atlantic meridional overturning circulation (AMOC). Here, we further investigate the possible link between the AMOC and WH and the competing drivers of vertical mixing and surface heat fluxes. Across a large ensemble of 41 climate models we find that the spatial structure of the WH varies considerably from model to model but is generally upstream of the simulated deep water formation regions. A heat budget analysis suggests the formation of the WH is related to changes in ocean heat transport. Although the models display a plethora of AMOC mean states, they generally predict a weakening and shallowing of the AMOC also consistent with the evolving depth structure of the WH. A lagged regression analysis during the WH onset phase suggests that reductions in wintertime mixing lead a weakening of the AMOC by 5 years in turn leading initiation of the WH by 5 years. Inter-model differences in the evolution and structure of the WH are likely to lead to somewhat different projected climate impacts in nearby Europe and North America.

Template based protein structure modeling by global optimization in CASP11.

PubMed

Joo, Keehyoung; Joung, InSuk; Lee, Sun Young; Kim, Jong Yun; Cheng, Qianyi; Manavalan, Balachandran; Joung, Jong Young; Heo, Seungryong; Lee, Juyong; Nam, Mikyung; Lee, In-Ho; Lee, Sung Jong; Lee, Jooyoung

2016-09-01

For the template-based modeling (TBM) of CASP11 targets, we have developed three new protein modeling protocols (nns for server prediction and LEE and LEER for human prediction) by improving upon our previous CASP protocols (CASP7 through CASP10). We applied the powerful global optimization method of conformational space annealing to three stages of optimization, including multiple sequence-structure alignment, three-dimensional (3D) chain building, and side-chain remodeling. For more successful fold recognition, a new alignment method called CRFalign was developed. It can incorporate sensitive positional and environmental dependence in alignment scores as well as strong nonlinear correlations among various features. Modifications and adjustments were made to the form of the energy function and weight parameters pertaining to the chain building procedure. For the side-chain remodeling step, residue-type dependence was introduced to the cutoff value that determines the entry of a rotamer to the side-chain modeling library. The improved performance of the nns server method is attributed to successful fold recognition achieved by combining several methods including CRFalign and to the current modeling formulation that can incorporate native-like structural aspects present in multiple templates. The LEE protocol is identical to the nns one except that CASP11-released server models are used as templates. The success of LEE in utilizing CASP11 server models indicates that proper template screening and template clustering assisted by appropriate cluster ranking promises a new direction to enhance protein 3D modeling. Proteins 2016; 84(Suppl 1):221-232. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles

PubMed Central

Ghouzam, Yassine; Postic, Guillaume; Guerin, Pierre-Edouard; de Brevern, Alexandre G.; Gelly, Jean-Christophe

2016-01-01

Protein structure prediction based on comparative modeling is the most efficient way to produce structural models when it can be performed. ORION is a dedicated webserver based on a new strategy that performs this task. The identification by ORION of suitable templates is performed using an original profile-profile approach that combines sequence and structure evolution information. Structure evolution information is encoded into profiles using structural features, such as solvent accessibility and local conformation —with Protein Blocks—, which give an accurate description of the local protein structure. ORION has recently been improved, increasing by 5% the quality of its results. The ORION web server accepts a single protein sequence as input and searches homologous protein structures within minutes. Various databases such as PDB, SCOP and HOMSTRAD can be mined to find an appropriate structural template. For the modeling step, a protein 3D structure can be directly obtained from the selected template by MODELLER and displayed with global and local quality model estimation measures. The sequence and the predicted structure of 4 examples from the CAMEO server and a recent CASP11 target from the ‘Hard’ category (T0818-D1) are shown as pertinent examples. Our web server is accessible at http://www.dsimb.inserm.fr/ORION/. PMID:27319297

ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles.

PubMed

Ghouzam, Yassine; Postic, Guillaume; Guerin, Pierre-Edouard; de Brevern, Alexandre G; Gelly, Jean-Christophe

2016-06-20

Protein structure prediction based on comparative modeling is the most efficient way to produce structural models when it can be performed. ORION is a dedicated webserver based on a new strategy that performs this task. The identification by ORION of suitable templates is performed using an original profile-profile approach that combines sequence and structure evolution information. Structure evolution information is encoded into profiles using structural features, such as solvent accessibility and local conformation -with Protein Blocks-, which give an accurate description of the local protein structure. ORION has recently been improved, increasing by 5% the quality of its results. The ORION web server accepts a single protein sequence as input and searches homologous protein structures within minutes. Various databases such as PDB, SCOP and HOMSTRAD can be mined to find an appropriate structural template. For the modeling step, a protein 3D structure can be directly obtained from the selected template by MODELLER and displayed with global and local quality model estimation measures. The sequence and the predicted structure of 4 examples from the CAMEO server and a recent CASP11 target from the 'Hard' category (T0818-D1) are shown as pertinent examples. Our web server is accessible at http://www.dsimb.inserm.fr/ORION/.

Using a fast Fourier method to model sound propagation in a stratified atmosphere over a stratified porous-elastic ground

NASA Technical Reports Server (NTRS)

Tooms, S.; Attenborough, K.

1990-01-01

Using a Fast Fourier integration method and a global matrix method for solution of the boundary condition equations at all interfaces simultaneously, a useful tool for predicting acoustic propagation in a stratified fluid over a stratified porous-elastic solid was developed. The model for the solid is a modified Biot-Stoll model incorporating four parameters describing the pore structure corresponding to the Rayleigh-Attenborough rigid-porous structure model. The method is also compared to another Fast Fourier code (CERL-FFP) which models the ground as an impedance surface under a horizontally stratified air. Agreement with the CERL FFP is good. The effects on sound propagation of a combination of ground elasticity, complex ground structure, and atmospheric conditions are demonstrated by theoretical results over a snow layer, and experimental results over a model ground surface.

Bayesian uncertainty analysis for complex systems biology models: emulation, global parameter searches and evaluation of gene functions.

PubMed

Vernon, Ian; Liu, Junli; Goldstein, Michael; Rowe, James; Topping, Jen; Lindsey, Keith

2018-01-02

Many mathematical models have now been employed across every area of systems biology. These models increasingly involve large numbers of unknown parameters, have complex structure which can result in substantial evaluation time relative to the needs of the analysis, and need to be compared to observed data of various forms. The correct analysis of such models usually requires a global parameter search, over a high dimensional parameter space, that incorporates and respects the most important sources of uncertainty. This can be an extremely difficult task, but it is essential for any meaningful inference or prediction to be made about any biological system. It hence represents a fundamental challenge for the whole of systems biology. Bayesian statistical methodology for the uncertainty analysis of complex models is introduced, which is designed to address the high dimensional global parameter search problem. Bayesian emulators that mimic the systems biology model but which are extremely fast to evaluate are embeded within an iterative history match: an efficient method to search high dimensional spaces within a more formal statistical setting, while incorporating major sources of uncertainty. The approach is demonstrated via application to a model of hormonal crosstalk in Arabidopsis root development, which has 32 rate parameters, for which we identify the sets of rate parameter values that lead to acceptable matches between model output and observed trend data. The multiple insights into the model's structure that this analysis provides are discussed. The methodology is applied to a second related model, and the biological consequences of the resulting comparison, including the evaluation of gene functions, are described. Bayesian uncertainty analysis for complex models using both emulators and history matching is shown to be a powerful technique that can greatly aid the study of a large class of systems biology models. It both provides insight into model behaviour and identifies the sets of rate parameters of interest.

Global and regional ecosystem modeling: comparison of model outputs and field measurements

NASA Astrophysics Data System (ADS)

Olson, R. J.; Hibbard, K.

2003-04-01

The Ecosystem Model-Data Intercomparison (EMDI) Workshops provide a venue for global ecosystem modeling groups to compare model outputs against measurements of net primary productivity (NPP). The objective of EMDI Workshops is to evaluate model performance relative to observations in order to improve confidence in global model projections terrestrial carbon cycling. The questions addressed by EMDI include: How does the simulated NPP compare with the field data across biome and environmental gradients? How sensitive are models to site-specific climate? Does additional mechanistic detail in models result in a better match with field measurements? How useful are the measures of NPP for evaluating model predictions? How well do models represent regional patterns of NPP? Initial EMDI results showed general agreement between model predictions and field measurements but with obvious differences that indicated areas for potential data and model improvement. The effort was built on the development and compilation of complete and consistent databases for model initialization and comparison. Database development improves the data as well as models; however, there is a need to incorporate additional observations and model outputs (LAI, hydrology, etc.) for comprehensive analyses of biogeochemical processes and their relationships to ecosystem structure and function. EMDI initialization and NPP data sets are available from the Oak Ridge National Laboratory Distributed Active Archive Center http://www.daac.ornl.gov/. Acknowledgements: This work was partially supported by the International Geosphere-Biosphere Programme - Data and Information System (IGBP-DIS); the IGBP-Global Analysis, Interpretation and Modelling Task Force (GAIM); the National Center for Ecological Analysis and Synthesis (NCEAS); and the National Aeronautics and Space Administration (NASA) Terrestrial Ecosystem Program. Oak Ridge National Laboratory is managed by UT-Battelle LLC for the U.S. Department of Energy under contract DE-AC05-00OR22725

Global Three-Dimensional Atmospheric Structure of the Atlantic Multidecadal Oscillation as Revealed by Two Reanalyses

NASA Astrophysics Data System (ADS)

Stuckman, Scott Seele

This study is a first documentation of the structure of the entire AMO life cycle, including extreme and transition phases, throughout the global troposphere. The extreme phase climate signature is constructed based on the strongest and most robust patterns identified by two methods (linear correlation and composite analyses), two reanalysis datasets (the National Centers for Environmental Prediction/National Center for Atmospheric Research and Twentieth Century Reanalysis, supplemented with precipitation data from the University of Delaware dataset) and data from two consecutive AMO cycles. The first characterization of the AMO transition phases uses a transition index based on the time derivative of AMO index. When trying to compare the zonal mean structure of AMO with the El Niño-Southern Oscillation (ENSO), a literature search showed the zonal mean structure of ENSO remained unpublished, despite the otherwise generally well-characterized horizontal structures. Therefore this study includes a seasonal analysis of the ENSO zonal mean structure during boreal winter (DJF) and summer (JJA). The AMO extreme phase is characterized by a blend of low and middle latitude centers of action, with the associated tilt of geopotential height anomaly patterns consistent with off-equatorial heating patterns generated by the Held idealized model. The surface climate signature is connected to the upper air with baroclinic vertical structure over the North Atlantic but barotropic structures elsewhere. The associated zonal mean circulation features three circulation cells globally with strong inter-hemispheric mixing that suggests the traditional view of the AMO involving a Northern-Southern Hemisphere asymmetry is accurate only near the surface. The AMO transition phase features a more equatorial-based climate signature and associated geopotential height anomaly patterns consistent with the Matsuno-Gill idealized model. The zonal mean circulation of the transition phases features six, rather than three, circulation cells globally. The only baroclinic structure, over North America, and several barotropic structures are positioned west of corresponding similar structures during the AMO extreme phase, suggesting an eastward evolution of climate anomalies as the AMO progresses from a cool-to-warm transition phase to warm phase. The Pacific-based climate signature resembles the IPO warm phase and it is proposed the AMO and IPO are different basin-wide expressions of a single multidecadal oscillation. The identification of an AMO transition phase climate signature distinct from the extreme phase suggests transition phases are not neutral and may provide an additional source of information for characterizing climate cycles.

Stability of Lobed Balloons

NASA Technical Reports Server (NTRS)

Ball, Danny (Technical Monitor); Pagitz, M.; Pellegrino, Xu S.

2004-01-01

This paper presents a computational study of the stability of simple lobed balloon structures. Two approaches are presented, one based on a wrinkled material model and one based on a variable Poisson s ratio model that eliminates compressive stresses iteratively. The first approach is used to investigate the stability of both a single isotensoid and a stack of four isotensoids, for perturbations of in.nitesimally small amplitude. It is found that both structures are stable for global deformation modes, but unstable for local modes at su.ciently large pressure. Both structures are stable if an isotropic model is assumed. The second approach is used to investigate the stability of the isotensoid stack for large shape perturbations, taking into account contact between di.erent surfaces. For this structure a distorted, stable configuration is found. It is also found that the volume enclosed by this con.guration is smaller than that enclosed by the undistorted structure.

The Feasibility of Quality Function Deployment (QFD) as an Assessment and Quality Assurance Model

ERIC Educational Resources Information Center

Matorera, D.; Fraser, W. J.

2016-01-01

Business schools are globally often seen as structured, purpose-driven, multi-sector and multi-perspective organisations. This article is based on the response of a graduate school to an innovative industrial Quality Function Deployment-based model (QFD), which was to be adopted initially in a Master's degree programme for quality assurance…

Diagnosis and Quantification of Climatic Sensitivity of Carbon Fluxes in Ensemble Global Ecosystem Models

NASA Astrophysics Data System (ADS)

Wang, W.; Hashimoto, H.; Milesi, C.; Nemani, R. R.; Myneni, R.

2011-12-01

Terrestrial ecosystem models are primary scientific tools to extrapolate our understanding of ecosystem functioning from point observations to global scales as well as from the past climatic conditions into the future. However, no model is nearly perfect and there are often considerable structural uncertainties existing between different models. Ensemble model experiments thus become a mainstream approach in evaluating the current status of global carbon cycle and predicting its future changes. A key task in such applications is to quantify the sensitivity of the simulated carbon fluxes to climate variations and changes. Here we develop a systematic framework to address this question solely by analyzing the inputs and the outputs from the models. The principle of our approach is to assume the long-term (~30 years) average of the inputs/outputs as a quasi-equlibrium of the climate-vegetation system while treat the anomalies of carbon fluxes as responses to climatic disturbances. In this way, the corresponding relationships can be largely linearized and analyzed using conventional time-series techniques. This method is used to characterize three major aspects of the vegetation models that are mostly important to global carbon cycle, namely the primary production, the biomass dynamics, and the ecosystem respiration. We apply this analytical framework to quantify the climatic sensitivity of an ensemble of models including CASA, Biome-BGC, LPJ as well as several other DGVMs from previous studies, all driven by the CRU-NCEP climate dataset. The detailed analysis results are reported in this study.

The scaling structure of the global road network

PubMed Central

Giometto, Andrea; Shai, Saray; Bertuzzo, Enrico; Mucha, Peter J.; Rinaldo, Andrea

2017-01-01

Because of increasing global urbanization and its immediate consequences, including changes in patterns of food demand, circulation and land use, the next century will witness a major increase in the extent of paved roads built worldwide. To model the effects of this increase, it is crucial to understand whether possible self-organized patterns are inherent in the global road network structure. Here, we use the largest updated database comprising all major roads on the Earth, together with global urban and cropland inventories, to suggest that road length distributions within croplands are indistinguishable from urban ones, once rescaled to account for the difference in mean road length. Such similarity extends to road length distributions within urban or agricultural domains of a given area. We find two distinct regimes for the scaling of the mean road length with the associated area, holding in general at small and at large values of the latter. In suitably large urban and cropland domains, we find that mean and total road lengths increase linearly with their domain area, differently from earlier suggestions. Scaling regimes suggest that simple and universal mechanisms regulate urban and cropland road expansion at the global scale. As such, our findings bear implications for global road infrastructure growth based on land-use change and for planning policies sustaining urban expansions. PMID:29134071

The scaling structure of the global road network.

PubMed

Strano, Emanuele; Giometto, Andrea; Shai, Saray; Bertuzzo, Enrico; Mucha, Peter J; Rinaldo, Andrea

2017-10-01

Because of increasing global urbanization and its immediate consequences, including changes in patterns of food demand, circulation and land use, the next century will witness a major increase in the extent of paved roads built worldwide. To model the effects of this increase, it is crucial to understand whether possible self-organized patterns are inherent in the global road network structure. Here, we use the largest updated database comprising all major roads on the Earth, together with global urban and cropland inventories, to suggest that road length distributions within croplands are indistinguishable from urban ones, once rescaled to account for the difference in mean road length. Such similarity extends to road length distributions within urban or agricultural domains of a given area. We find two distinct regimes for the scaling of the mean road length with the associated area, holding in general at small and at large values of the latter. In suitably large urban and cropland domains, we find that mean and total road lengths increase linearly with their domain area, differently from earlier suggestions. Scaling regimes suggest that simple and universal mechanisms regulate urban and cropland road expansion at the global scale. As such, our findings bear implications for global road infrastructure growth based on land-use change and for planning policies sustaining urban expansions.

Developing Regionalized Models of Lithospheric Thickness and Velocity Structure Across Eurasia and the Middle East from Jointly Inverting P-Wave and S-Wave Receiver Functions with Rayleigh Wave Group and Phase Velocities

DTIC Science & Technology

2011-09-01

modeling of regional waveforms at station ANTO , in UNIFIED region #14. The velocity models (left) and the corresponding predictions (middle and right) are...models, Geophy. J. Int. 118: 245–254. Rychert, C. A. and P. M. Shearer (2009). A global view of the lithosphere-asthenosphere boundary, Science 324 : 495

Recent Naval Postgraduate School Publications.

DTIC Science & Technology

1982-04-01

477 p. Haney, R L; et al.; eds. Ocean models for climate research: A workshop Sponsored by the U.S. Committee for the Global Atmos. Hes. Program. Nat... climate variability Oceanus, vol. 21, no. 4, p. 33-39, (1978). Williams, R T A review of theoretical models of atmospheric frontogenesis Chapman Conf...structure in large-scale optimization models Symp. 9 n Computer-Assisted Analysis and Model Simpification, Boulder, Colo., Mar. 24, 1980. Brown, G G

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stavros, E. Natasha; Schimel, David; Pavlick, Ryan

Technologies on the International Space Station will provide ~1 year of synchronous observations of ecosystem composition, structure and function, in 2018. Here, we discuss these instruments and how they can be used to constrain global models and improve our understanding of the current state of terrestrial ecosystems.

Subtle balance of tropoelastin molecular shape and flexibility regulates dynamics and hierarchical assembly.

PubMed

Yeo, Giselle C; Tarakanova, Anna; Baldock, Clair; Wise, Steven G; Buehler, Markus J; Weiss, Anthony S

2016-02-01

The assembly of the tropoelastin monomer into elastin is vital for conferring elasticity on blood vessels, skin, and lungs. Tropoelastin has dual needs for flexibility and structure in self-assembly. We explore the structure-dynamics-function interplay, consider the duality of molecular order and disorder, and identify equally significant functional contributions by local and global structures. To study these organizational stratifications, we perturb a key hinge region by expressing an exon that is universally spliced out in human tropoelastins. We find a herniated nanostructure with a displaced C terminus and explain by molecular modeling that flexible helices are replaced with substantial β sheets. We see atypical higher-order cross-linking and inefficient assembly into discontinuous, thick elastic fibers. We explain this dysfunction by correlating local and global structural effects with changes in the molecule's assembly dynamics. This work has general implications for our understanding of elastomeric proteins, which balance disordered regions with defined structural modules at multiple scales for functional assembly.

Neural model of gene regulatory network: a survey on supportive meta-heuristics.

PubMed

Biswas, Surama; Acharyya, Sriyankar

2016-06-01

Gene regulatory network (GRN) is produced as a result of regulatory interactions between different genes through their coded proteins in cellular context. Having immense importance in disease detection and drug finding, GRN has been modelled through various mathematical and computational schemes and reported in survey articles. Neural and neuro-fuzzy models have been the focus of attraction in bioinformatics. Predominant use of meta-heuristic algorithms in training neural models has proved its excellence. Considering these facts, this paper is organized to survey neural modelling schemes of GRN and the efficacy of meta-heuristic algorithms towards parameter learning (i.e. weighting connections) within the model. This survey paper renders two different structure-related approaches to infer GRN which are global structure approach and substructure approach. It also describes two neural modelling schemes, such as artificial neural network/recurrent neural network based modelling and neuro-fuzzy modelling. The meta-heuristic algorithms applied so far to learn the structure and parameters of neutrally modelled GRN have been reviewed here.

A local structure model for network analysis

DOE PAGES

Casleton, Emily; Nordman, Daniel; Kaiser, Mark

2017-04-01

The statistical analysis of networks is a popular research topic with ever widening applications. Exponential random graph models (ERGMs), which specify a model through interpretable, global network features, are common for this purpose. In this study we introduce a new class of models for network analysis, called local structure graph models (LSGMs). In contrast to an ERGM, a LSGM specifies a network model through local features and allows for an interpretable and controllable local dependence structure. In particular, LSGMs are formulated by a set of full conditional distributions for each network edge, e.g., the probability of edge presence/absence, depending onmore » neighborhoods of other edges. Additional model features are introduced to aid in specification and to help alleviate a common issue (occurring also with ERGMs) of model degeneracy. Finally, the proposed models are demonstrated on a network of tornadoes in Arkansas where a LSGM is shown to perform significantly better than a model without local dependence.« less

A local structure model for network analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Casleton, Emily; Nordman, Daniel; Kaiser, Mark

The statistical analysis of networks is a popular research topic with ever widening applications. Exponential random graph models (ERGMs), which specify a model through interpretable, global network features, are common for this purpose. In this study we introduce a new class of models for network analysis, called local structure graph models (LSGMs). In contrast to an ERGM, a LSGM specifies a network model through local features and allows for an interpretable and controllable local dependence structure. In particular, LSGMs are formulated by a set of full conditional distributions for each network edge, e.g., the probability of edge presence/absence, depending onmore » neighborhoods of other edges. Additional model features are introduced to aid in specification and to help alleviate a common issue (occurring also with ERGMs) of model degeneracy. Finally, the proposed models are demonstrated on a network of tornadoes in Arkansas where a LSGM is shown to perform significantly better than a model without local dependence.« less

Modeling ready biodegradability of fragrance materials.

PubMed

Ceriani, Lidia; Papa, Ester; Kovarich, Simona; Boethling, Robert; Gramatica, Paola

2015-06-01

In the present study, quantitative structure activity relationships were developed for predicting ready biodegradability of approximately 200 heterogeneous fragrance materials. Two classification methods, classification and regression tree (CART) and k-nearest neighbors (kNN), were applied to perform the modeling. The models were validated with multiple external prediction sets, and the structural applicability domain was verified by the leverage approach. The best models had good sensitivity (internal ≥80%; external ≥68%), specificity (internal ≥80%; external 73%), and overall accuracy (≥75%). Results from the comparison with BIOWIN global models, based on group contribution method, show that specific models developed in the present study perform better in prediction than BIOWIN6, in particular for the correct classification of not readily biodegradable fragrance materials. © 2015 SETAC.

Active control of interior noise in model aircraft fuselages using piezoceramic actuators

NASA Technical Reports Server (NTRS)

Fuller, C. R.; Hansen, C. H.; Silcox, R. J.; Snyder, S. D.

1990-01-01

Active control of interior noise in model aircraft fuselages using piezoceramic actuators is experimentally studied. The actuators are bonded directly to the structure and error information is taken from up to two microphones located in the interior acoustic field. The results demonstrate that global attenuation of the order of 10 to 15 dB of interior noise can be achieved with piezoceramic actuators, irrespective of whether the shell system is vibrating at an acoustic or structural resonant frequency. The work also proves that active control using vibration (moment) inputs works well when a floor simulating that of an aircraft is installed in the model. This result suggests that the technique will be successful in controlling interior noise in realistic aircraft structures.

Magnetofluid Simulations of the Global Solar Wind Including Pickup Ions and Turbulence Modeling

NASA Technical Reports Server (NTRS)

Goldstein, Melvyn L.; Usmanov, Arcadi V.; Matthaeus, William H.

2011-01-01

I will describe a three-dimensional magnetohydrodynamic model of the solar wind that takes into account turbulent heating of the wind by velocity and magnetic fluctuations as well as a variety of effects produced by interstellar pickup protons. In this report, the interstellar pickup protons are treated as one fluid and the protons and electrons are treated together as a second fluid. The model equations include a Reynolds decomposition of the plasma velocity and magnetic field into mean and fluctuating quantities, as well as energy transfer from interstellar pickup protons to solar wind protons that results in the deceleration of the solar wind. The model is used to simulate the global steady-state structure of the solar wind in the region from 0.3 to 100 AU. Where possible, the model is compared with Voyager data. Initial results from generalization to a three-fluid model is described elsewhere in this session.

Coordinated Parameterization Development and Large-Eddy Simulation for Marine and Arctic Cloud-Topped Boundary Layers

NASA Technical Reports Server (NTRS)

Bretherton, Christopher S.

2002-01-01

The goal of this project was to compare observations of marine and arctic boundary layers with: (1) parameterization systems used in climate and weather forecast models; and (2) two and three dimensional eddy resolving (LES) models for turbulent fluid flow. Based on this comparison, we hoped to better understand, predict, and parameterize the boundary layer structure and cloud amount, type, and thickness as functions of large scale conditions that are predicted by global climate models. The principal achievements of the project were as follows: (1) Development of a novel boundary layer parameterization for large-scale models that better represents the physical processes in marine boundary layer clouds; and (2) Comparison of column output from the ECMWF global forecast model with observations from the SHEBA experiment. Overall the forecast model did predict most of the major precipitation events and synoptic variability observed over the year of observation of the SHEBA ice camp.

Computing approximate solutions of the protein structure determination problem using global constraints on discrete crystal lattices.

PubMed

Dal Palù, Alessandro; Dovier, Agostino; Pontelli, Enrico

2010-01-01

Crystal lattices are discrete models of the three-dimensional space that have been effectively employed to facilitate the task of determining proteins' natural conformation. This paper investigates alternative global constraints that can be introduced in a constraint solver over discrete crystal lattices. The objective is to enhance the efficiency of lattice solvers in dealing with the construction of approximate solutions of the protein structure determination problem. Some of them (e.g., self-avoiding-walk) have been explicitly or implicitly already used in previous approaches, while others (e.g., the density constraint) are new. The intrinsic complexities of all of them are studied and preliminary experimental results are discussed.

A computational study of open-chain epothilone analogue

NASA Astrophysics Data System (ADS)

Kamel, Karol; Rusinska-Roszak, Danuta

Molecular mechanics (MM/Ambers) calculations were applied to probe the conformational profile of open-chain epothilone analogue [Org Lett 2006, 8, 685], cytotoxic against some cell lines. Geometries of the most stable conformers were optimized at DFT level using the B3LYP functional and then compared to known both experimental and virtual conformers of epothilone. One of the most stable structures is III (1.47 kcal/mol above global minimum) which represents high similarity to the appropriate fragment of the Taylor's model of epothilone A, but two other conformers: XIV and XX, although they have almost the same conformation as the mother structure, are very unstable (6.7 and 12.4 kcal/mol above the global minimum).0

Poisson structure of dynamical systems with three degrees of freedom

NASA Astrophysics Data System (ADS)

Gümral, Hasan; Nutku, Yavuz

1993-12-01

It is shown that the Poisson structure of dynamical systems with three degrees of freedom can be defined in terms of an integrable one-form in three dimensions. Advantage is taken of this fact and the theory of foliations is used in discussing the geometrical structure underlying complete and partial integrability. Techniques for finding Poisson structures are presented and applied to various examples such as the Halphen system which has been studied as the two-monopole problem by Atiyah and Hitchin. It is shown that the Halphen system can be formulated in terms of a flat SL(2,R)-valued connection and belongs to a nontrivial Godbillon-Vey class. On the other hand, for the Euler top and a special case of three-species Lotka-Volterra equations which are contained in the Halphen system as limiting cases, this structure degenerates into the form of globally integrable bi-Hamiltonian structures. The globally integrable bi-Hamiltonian case is a linear and the SL(2,R) structure is a quadratic unfolding of an integrable one-form in 3+1 dimensions. It is shown that the existence of a vector field compatible with the flow is a powerful tool in the investigation of Poisson structure and some new techniques for incorporating arbitrary constants into the Poisson one-form are presented herein. This leads to some extensions, analogous to q extensions, of Poisson structure. The Kermack-McKendrick model and some of its generalizations describing the spread of epidemics, as well as the integrable cases of the Lorenz, Lotka-Volterra, May-Leonard, and Maxwell-Bloch systems admit globally integrable bi-Hamiltonian structure.

Overload, autonomy, and burnout as predictors of physicians' quality of care.

PubMed

Shirom, Arie; Nirel, Nurit; Vinokur, Amiram D

2006-10-01

A model in which perceived overload and burnout mediated the relations of workload and autonomy with physicians' quality of care to their patients was examined. The study was based on data from 890 specialists representing six medical specialties. Including global burnout as well as its three first-order facets of physical fatigue, cognitive weariness, and emotional exhaustion improved the fit between the structural model and the data relative to an alternative model that included only global burnout. Workload (number of work hours) indirectly predicted quality of care through perceived overload. Additionally, the authors found that the paths from the first order factors of emotional exhaustion, physical fatigue, and cognitive weariness predicted quality of care negatively, positively, and nonsignificantly, respectively.

Global Admittance Estimates of Elastic and Crustal Thickness of Venus: Results from Top, Hot Spot, and Bottom Loading Models

NASA Technical Reports Server (NTRS)

Smrekar, S. E.; Anderson, F. S.

2005-01-01

We have calculated admittance spectra using the spatio-spectral method [14] for Venus by moving the central location of the spectrum over a 1 grid, create 360x180 admittance spectra. We invert the observed admittance using top-loading (TL), hot spot (HS), and bottom loading (BL) models, resulting in elastic, crustal, and lithospheric thickness estimates (Te, Zc, and Zl) [0]. The result is a global map for interpreting subsurface structure. Estimated values of Te and Zc concur with previous TL local admittance results, but BL estimates indicate larger values than previously suspected.

Integrated Modeling Study of the Effects of the Magnetospheric Forcing on the Jovian Ionosphere-Thermosphere System

NASA Technical Reports Server (NTRS)

Bogan, Denis (Technical Monitor); Waite, J. Hunter

2005-01-01

The Jupiter Thermosphere General Circulation Model (JTGCM) calculates the global dynamical structure of Jupiter s thermosphere self-consistently with its global thermal structure and composition. The main heat source that drives the thermospheric flow is high-latitude Joule heating. A secondary source of heating is the auroral process of particle precipitation. Global simulations of Jovian thermospheric dynamics indicate strong neutral outflows from the auroral ovals with velocities up to approx.2 km/s and subsequent convergence and downwelling at the Jovian equator. Such circulation is shown to be an important process for transporting significant amounts of auroral energy t o equatorial latitudes and for regulating the global heat budget in a manner consistent with the high thermospheric temperatures observed by the Galileo probe. Adiabatic compression of the neutral atmosphere resulting from downward motion is an important source of equatorial heating (< 0.06 microbar). The adiabatic heating continues to dominate between 0.06 and 0.2 microbar, but with an addition of comparable heating due to horizontal advection induced by the meridional flow. Thermal conduction plays an important role in transporting heat down to lower altitudes (>0.2microbar) where it is balanced by the cooling associated with the wind transport processes. Interestingly, we find that radiative cooling caused by H3(+), CH4, and C2H2 emissions does not play a significant role in interpreting the Galileo temperature profile.

Global characteristics of zonal flows due to the effect of finite bandwidth in drift wave turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uzawa, K.; Li Jiquan; Kishimoto, Y.

2009-04-15

The spectral effect of the zonal flow (ZF) on its generation is investigated based on the Charney-Hasegawa-Mima turbulence model. It is found that the effect of finite ZF bandwidth qualitatively changes the characteristics of ZF instability. A spatially localized (namely, global) nonlinear ZF state with an enhanced, unique growth rate for all spectral components is created under a given turbulent fluctuation. It is identified that such state originates from the successive cross couplings among Fourier components of the ZF and turbulence spectra through the sideband modulation. Furthermore, it is observed that the growth rate of the global ZF is determinedmore » not only by the spectral distribution and amplitudes of turbulent pumps as usual, but also statistically by the turbulence structure, namely, their probabilistic initial phase factors. A ten-wave coupling model of the ZF modulation instability involving the essential effect of the ZF spectrum is developed to clarify the basic features of the global nonlinear ZF state.« less

Global constitutionalism, applied to global health governance: uncovering legitimacy deficits and suggesting remedies.

PubMed

Ooms, Gorik; Hammonds, Rachel

2016-12-03

Global constitutionalism is a way of looking at the world, at global rules and how they are made, as if there was a global constitution, empowering global institutions to act as a global government, setting rules which bind all states and people. This essay employs global constitutionalism to examine how and why global health governance, as currently structured, has struggled to advance the right to health, a fundamental human rights obligation enshrined in the International Covenant on Economic, Social and Cultural Rights. It first examines the core structure of the global health governance architecture, and its evolution since the Second World War. Second, it identifies the main constitutionalist principles that are relevant for a global constitutionalism assessment of the core structure of the global health governance architecture. Finally, it applies these constitutionalist principles to assess the core structure of the global health governance architecture. Leading global health institutions are structurally skewed to preserve high incomes countries' disproportionate influence on transnational rule-making authority, and tend to prioritise infectious disease control over the comprehensive realisation of the right to health. A Framework Convention on Global Health could create a classic division of powers in global health governance, with WHO as the law-making power in global health governance, a global fund for health as the executive power, and the International Court of Justice as the judiciary power.

Precipitation Processes Derived from TRMM Satellite Data, Cloud Resolving Model and Field Campaigns

NASA Technical Reports Server (NTRS)

Tao, W.-K.; Lang, S.; Simpson, J.; Meneghini, R.; Halverson, J.; Johnson, R.; Adler, R.; Einaudi, Franco (Technical Monitor)

2001-01-01

Rainfall is a key link in the hydrologic cycle and is a primary heat source for the atmosphere. The vertical distribution of latent-heat release, which is accompanied by rainfall, modulates the large-scale circulations of the tropics and in turn can impact midlatitude weather. This latent heat release is a consequence of phase changes between vapor, liquid. and solid water. Present large-scale weather and climate models can simulate cloud latent heat release only crudely thus reducing their confidence in predictions on both global and regional scales. In this paper, NASA Tropical Rainfall Measuring (TRMM) precipitation radar (PR) derived rainfall information and the Goddard Convective and Stratiform Heating (CSH) algorithm used to estimate the four-dimensional structure of global monthly latent heating and rainfall profiles over the global tropics from December 1997 to October 2000. Rainfall latent heating and radar reflectively structure between ENSO (1997-1998 winter) and non-ENSO (1998-1999 winter) periods are examined and compared. The seasonal variation of heating over various geographic locations (i.e. Indian ocean vs west Pacific; Africa vs S. America) are also analyzed. In addition, the relationship between rainfall latent heating maximum heating level), radar reflectively and SST are examined.

Material damage modeling and detection in a thin metallic sheet and sandwich panel using passive acoustic transmission

NASA Astrophysics Data System (ADS)

Jiang, Hao

A method is developed for modeling, detecting, and locating material damage in homogeneous thin metallic sheets and sandwich panels. Analytical and numerical models are used along with non-contact, passive acoustic transmission measurements. It is shown that global and local damage mechanisms characterized by both material and geometrical changes in structural components can be detected using passive acoustic transmission measurements. Theoretical models of a flat sheet and sandwich panel are developed to describe the effects of global material damage due to density, modulus, or thickness changes on backplane radiated sound pressure level distributions. To describe the effects of local material damage, a three-segment stepped beam model and finite element beam, plate, and sandwich panel models are developed and analyzed using the acoustic transmission approach. It is shown that increases or decreases in transmitted sound energy occur behind a damaged material component that exhibits changes in thickness or other geometric or material properties. The damage due to thickness and density changes can be detected from the acoustic transmission, but modulus changes cannot. If the damage is located at an anti-node of a certain forced vibration pattern, the damage can be more readily observed in the data. Higher excitation frequencies within the operating spectrum are preferred to lower frequencies for damage detection. With the finite element beam, plate, and sandwich panel models, local damage detection has been performed in simulations. Experiments on a baffled homogeneous sheet and sandwich panel subjected to broadband acoustic energy show that transmitted intensity measurements with non-contact probes can be used to identify and locate material defects in the sheet and sandwich panel. Material damage is most readily identified where the changes in transmitted sound intensity are largest in the resonant frequency range of the panel. The three main contributions of this research are: (1) the use of non-contact sensing to detect global and localized damage in structural components; (2) the analytical and numerical modeling of material and geometrical damage mechanisms in structural components; and, (3) the experimental verification of acoustic transmission measurements for detecting both material and geometric damage mechanisms.

A New Global LAI Product and Its Use for Terrestrial Carbon Cycle Estimation

NASA Astrophysics Data System (ADS)

Chen, J. M.; Liu, R.; Ju, W.; Liu, Y.

2014-12-01

For improving the estimation of the spatio-temporal dynamics of the terrestrial carbon cycle, a new time series of the leaf area index (LAI) is generated for the global land surface at 8 km resolution from 1981 to 2012 by combining AVHRR and MODIS satellite data. This product differs from existing LAI products in the following two aspects: (1) the non-random spatial distribution of leaves with the canopy is considered, and (2) the seasonal variation of the vegetation background is included. The non-randomness of the leaf spatial distribution in the canopy is considered using the second vegetation structural parameter named clumping index (CI), which quantifies the deviation of the leaf spatial distribution from the random case. Using the MODIS Bidirectional Reflectance Distribution Function product, a global map of CI is produced at 500 m resolution. In our LAI algorithm, CI is used to convert the effective LAI obtained from mono-angle remote sensing into the true LAI, otherwise LAI would be considerably underestimated. The vegetation background is soil in crop, grass and shrub but includes soil, grass, moss, and litter in forests. Through processing a large volume of MISR data from 2000 to 2010, monthly red and near-infrared reflectances of the vegetation background is mapped globally at 1 km resolution. This new LAI product has been validated extensively using ground-based LAI measurements distributed globally. In carbon cycle modeling, the use of CI in addition to LAI allows for accurate separation of sunlit and shaded leaves as an important step in terrestrial photosynthesis and respiration modeling. Carbon flux measurements over 100 sites over the globe are used to validate an ecosystem model named Boreal Ecosystem Productivity Simulator (BEPS). The validated model is run globally at 8 km resolution for the period from 1981 to 2012 using the LAI product and other spatial datasets. The modeled results suggest that changes in vegetation structure as quantified by LAI do not contribute significantly to the increasing trend in carbon sink over the last 32 years. The increases in atmospheric CO2 concentration and nitrogen deposition are found to be the major causes for the increases in plant productivity and carbon sink over the last 32 years.

Optical interferometer testbed

NASA Technical Reports Server (NTRS)

Blackwood, Gary H.

1991-01-01

Viewgraphs on optical interferometer testbed presented at the MIT Space Research Engineering Center 3rd Annual Symposium are included. Topics covered include: space-based optical interferometer; optical metrology; sensors and actuators; real time control hardware; controlled structures technology (CST) design methodology; identification for MIMO control; FEM/ID correlation for the naked truss; disturbance modeling; disturbance source implementation; structure design: passive damping; low authority control; active isolation of lightweight mirrors on flexible structures; open loop transfer function of mirror; and global/high authority control.

Improving the representation of photosynthesis in Earth system models

NASA Astrophysics Data System (ADS)

Rogers, A.; Medlyn, B. E.; Dukes, J.; Bonan, G. B.; von Caemmerer, S.; Dietze, M.; Kattge, J.; Leakey, A. D.; Mercado, L. M.; Niinemets, U.; Prentice, I. C. C.; Serbin, S.; Sitch, S.; Way, D. A.; Zaehle, S.

2015-12-01

Continued use of fossil fuel drives an accelerating increase in atmospheric CO2 concentration ([CO2]) and is the principal cause of global climate change. Many of the observed and projected impacts of rising [CO2] portend increasing environmental and economic risk, yet the uncertainty surrounding the projection of our future climate by Earth System Models (ESMs) is unacceptably high. Improving confidence in our estimation of future [CO2] is essential if we seek to project global change with greater confidence. There are critical uncertainties over the long term response of terrestrial CO2 uptake to global change, more specifically, over the size of the terrestrial carbon sink and over its sensitivity to rising [CO2] and temperature. Reducing the uncertainty associated with model representation of the largest CO2 flux on the planet is therefore an essential part of improving confidence in projections of global change. Here we have examined model representation of photosynthesis in seven process models including several global models that underlie the representation of photosynthesis in the land surface model component of ESMs that were part of the recent Fifth Assessment Report from the IPCC. Our approach was to focus on how physiological responses are represented by these models, and to better understand how structural and parametric differences drive variation in model responses to light, CO2, nutrients, temperature, vapor pressure deficit and soil moisture. We challenged each model to produce leaf and canopy responses to these factors to help us identify areas in which current process knowledge and emerging data sets could be used to improve model skill, and also identify knowledge gaps in current understanding that directly impact model outputs. We hope this work will provide a roadmap for the scientific activity that is necessary to advance process representation, parameterization and scaling of photosynthesis in the next generation of Earth System Models.

The Institute for Global Orthopedics and Traumatology: A Model for Academic Collaboration in Orthopedic Surgery.

PubMed

Conway, Devin James; Coughlin, Richard; Caldwell, Amber; Shearer, David

2017-01-01

In 2006, surgeons at the University of California, San Francisco (UCSF) established the Institute for Global Orthopedics and Traumatology (IGOT), an initiative within the department of orthopedic surgery. The principal aim of IGOT is to create long-term, sustainable solutions to the growing burden of musculoskeletal injury in low- and middle-income countries (LMICs) through academic partnership. IGOT currently has relationships with teaching hospitals in Ghana, Malawi, Tanzania, Nicaragua, and Nepal. The organizational structure of IGOT is built on four pillars: Global Surgical Education (GSE), Global Knowledge Exchange (GKE), Global Research Initiative (GRI), and Global Leadership and Advocacy. GSE focuses on increasing surgical knowledge and technical proficiency through hands-on educational courses. The GKE facilitates the mutual exchange of surgeons and trainees among IGOT and its partners. This includes a global resident elective that allows UCSF residents to complete an international rotation at one of IGOT's partner sites. The GRI strives to build research capacity and sponsor high-quality clinical research projects that address questions relevant to local partners. The fourth pillar, Global Leadership and Advocacy aims to increase awareness of the global impact of musculoskeletal injury through national and international courses and events, such as the Bay Area Global Health Film Festival. At the core of each tenet is the collaboration among IGOT and its international partners. Over the last decade, IGOT has experienced tremendous growth and maturation in its partnership model based on cumulative experience and the needs of its partners.

The Institute for Global Orthopedics and Traumatology: A Model for Academic Collaboration in Orthopedic Surgery

PubMed Central

Conway, Devin James; Coughlin, Richard; Caldwell, Amber; Shearer, David

2017-01-01

In 2006, surgeons at the University of California, San Francisco (UCSF) established the Institute for Global Orthopedics and Traumatology (IGOT), an initiative within the department of orthopedic surgery. The principal aim of IGOT is to create long-term, sustainable solutions to the growing burden of musculoskeletal injury in low- and middle-income countries (LMICs) through academic partnership. IGOT currently has relationships with teaching hospitals in Ghana, Malawi, Tanzania, Nicaragua, and Nepal. The organizational structure of IGOT is built on four pillars: Global Surgical Education (GSE), Global Knowledge Exchange (GKE), Global Research Initiative (GRI), and Global Leadership and Advocacy. GSE focuses on increasing surgical knowledge and technical proficiency through hands-on educational courses. The GKE facilitates the mutual exchange of surgeons and trainees among IGOT and its partners. This includes a global resident elective that allows UCSF residents to complete an international rotation at one of IGOT’s partner sites. The GRI strives to build research capacity and sponsor high-quality clinical research projects that address questions relevant to local partners. The fourth pillar, Global Leadership and Advocacy aims to increase awareness of the global impact of musculoskeletal injury through national and international courses and events, such as the Bay Area Global Health Film Festival. At the core of each tenet is the collaboration among IGOT and its international partners. Over the last decade, IGOT has experienced tremendous growth and maturation in its partnership model based on cumulative experience and the needs of its partners. PMID:28713803

Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.

PubMed

Park, Hahnbeom; Lee, Gyu Rie; Heo, Lim; Seok, Chaok

2014-01-01

Protein loop modeling is a tool for predicting protein local structures of particular interest, providing opportunities for applications involving protein structure prediction and de novo protein design. Until recently, the majority of loop modeling methods have been developed and tested by reconstructing loops in frameworks of experimentally resolved structures. In many practical applications, however, the protein loops to be modeled are located in inaccurate structural environments. These include loops in model structures, low-resolution experimental structures, or experimental structures of different functional forms. Accordingly, discrepancies in the accuracy of the structural environment assumed in development of the method and that in practical applications present additional challenges to modern loop modeling methods. This study demonstrates a new strategy for employing a hybrid energy function combining physics-based and knowledge-based components to help tackle this challenge. The hybrid energy function is designed to combine the strengths of each energy component, simultaneously maintaining accurate loop structure prediction in a high-resolution framework structure and tolerating minor environmental errors in low-resolution structures. A loop modeling method based on global optimization of this new energy function is tested on loop targets situated in different levels of environmental errors, ranging from experimental structures to structures perturbed in backbone as well as side chains and template-based model structures. The new method performs comparably to force field-based approaches in loop reconstruction in crystal structures and better in loop prediction in inaccurate framework structures. This result suggests that higher-accuracy predictions would be possible for a broader range of applications. The web server for this method is available at http://galaxy.seoklab.org/loop with the PS2 option for the scoring function.

An extreme climatic event alters marine ecosystem structure in a global biodiversity hotspot

NASA Astrophysics Data System (ADS)

Wernberg, Thomas; Smale, Dan A.; Tuya, Fernando; Thomsen, Mads S.; Langlois, Timothy J.; de Bettignies, Thibaut; Bennett, Scott; Rousseaux, Cecile S.

2013-01-01

Extreme climatic events, such as heat waves, are predicted to increase in frequency and magnitude as a consequence of global warming but their ecological effects are poorly understood, particularly in marine ecosystems. In early 2011, the marine ecosystems along the west coast of Australia--a global hotspot of biodiversity and endemism--experienced the highest-magnitude warming event on record. Sea temperatures soared to unprecedented levels and warming anomalies of 2-4°C persisted for more than ten weeks along >2,000km of coastline. We show that biodiversity patterns of temperate seaweeds, sessile invertebrates and demersal fish were significantly different after the warming event, which led to a reduction in the abundance of habitat-forming seaweeds and a subsequent shift in community structure towards a depauperate state and a tropicalization of fish communities. We conclude that extreme climatic events are key drivers of biodiversity patterns and that the frequency and intensity of such episodes have major implications for predictive models of species distribution and ecosystem structure, which are largely based on gradual warming trends.

Assessing deep and shallow learning methods for quantitative prediction of acute chemical toxicity.

PubMed

Liu, Ruifeng; Madore, Michael; Glover, Kyle P; Feasel, Michael G; Wallqvist, Anders

2018-05-02

Animal-based methods for assessing chemical toxicity are struggling to meet testing demands. In silico approaches, including machine-learning methods, are promising alternatives. Recently, deep neural networks (DNNs) were evaluated and reported to outperform other machine-learning methods for quantitative structure-activity relationship modeling of molecular properties. However, most of the reported performance evaluations relied on global performance metrics, such as the root mean squared error (RMSE) between the predicted and experimental values of all samples, without considering the impact of sample distribution across the activity spectrum. Here, we carried out an in-depth analysis of DNN performance for quantitative prediction of acute chemical toxicity using several datasets. We found that the overall performance of DNN models on datasets of up to 30,000 compounds was similar to that of random forest (RF) models, as measured by the RMSE and correlation coefficients between the predicted and experimental results. However, our detailed analyses demonstrated that global performance metrics are inappropriate for datasets with a highly uneven sample distribution, because they show a strong bias for the most populous compounds along the toxicity spectrum. For highly toxic compounds, DNN and RF models trained on all samples performed much worse than the global performance metrics indicated. Surprisingly, our variable nearest neighbor method, which utilizes only structurally similar compounds to make predictions, performed reasonably well, suggesting that information of close near neighbors in the training sets is a key determinant of acute toxicity predictions.

Evaluation of the Thermodynamic Consistency of Closure Approximations in Several Models Proposed for the Description of Liquid Crystalline Dynamics

NASA Astrophysics Data System (ADS)

Edwards, Brian J.

2002-05-01

Given the premise that a set of dynamical equations must possess a definite, underlying mathematical structure to ensure local and global thermodynamic stability, as has been well documented, several different models for describing liquid crystalline dynamics are examined with respect to said structure. These models, each derived during the past several years using a specific closure approximation for the fourth moment of the distribution function in Doi's rigid rod theory, are all shown to be inconsistent with this basic mathematical structure. The source of this inconsistency lies in Doi's expressions for the extra stress tensor and temporal evolution of the order parameter, which are rederived herein using a transformation that allows for internal compatibility with the underlying mathematical structure that is present on the distribution function level of description.

Quantifying Diurnal and Spatial Variations in CO2 Concentrations and Partial Columns using High-Resolution Global Model Simulations

NASA Astrophysics Data System (ADS)

Pawson, S.; Nielsen, J.; Ott, L. E.; Darmenov, A.; Putman, W.

2015-12-01

Model-data fusion approaches, such as global inverse modeling for surface flux estimation, have traditionally been performed at spatial resolutions of several tens to a few hundreds of kilometers. Use of such coarse scales presents a fundamental limitation in reconciling the modeled field with both the atmospheric observations and the distribution of surface emissions and uptake. Emissions typically occur on small scales, including point sources (e.g. power plants, forest fires) or with inhomegeneous structure. Biological uptake can have spatial variations related to complex, diverse vegetation, etc. Atmospheric observations of CO2 are either surface based, providing information at a single point, or space based with a finite-sized footprint. For instance, GOSAT and OCO-2 have footprint sizes of around 10km and proposed active sensors (such as ASCENDS) will likely have even finer footprints. One important aspect of reconciling models to measurements is the representativeness of the observation for the model field, and this depends on the generally unknown spatio-temporal variations of the CO2 field around the measurement location and time. This work presents an assessment of the global spatio-temporal variations of the CO2 field using the "7km GEOS-5 Nature Run" (7km-G5NR), which includes CO2 emissions and uptake mapped to the finest possible resolution. Results are shown for surface CO2 concentrations, total-column CO2, and separate upper and lower tropospheric columns. Spatial variability is shown to be largest in regions with strong point sources and at night in regions with complex terrain, especially where biological processes dominate the local CO2 fluxes, where the day-night differences are also most marked. The spatio-temporal variations are strongest for surface concentrations and for lower tropospheric CO2. While these results are largely anticipated, these high resolution simulations provide quantitative estimates of the global nature of spatio-temporal CO2 variability. Implications for characterizing representativeness of passive CO2 observations will be discussed. Differences between daytime and nighttime structures will be considered in light of active CO2 sensors. Finally, some possible limitations of the model will be highlighted, using some global 3-km simulations.

Comparison of global optimization approaches for robust calibration of hydrologic model parameters

NASA Astrophysics Data System (ADS)

Jung, I. W.

2015-12-01

Robustness of the calibrated parameters of hydrologic models is necessary to provide a reliable prediction of future performance of watershed behavior under varying climate conditions. This study investigated calibration performances according to the length of calibration period, objective functions, hydrologic model structures and optimization methods. To do this, the combination of three global optimization methods (i.e. SCE-UA, Micro-GA, and DREAM) and four hydrologic models (i.e. SAC-SMA, GR4J, HBV, and PRMS) was tested with different calibration periods and objective functions. Our results showed that three global optimization methods provided close calibration performances under different calibration periods, objective functions, and hydrologic models. However, using the agreement of index, normalized root mean square error, Nash-Sutcliffe efficiency as the objective function showed better performance than using correlation coefficient and percent bias. Calibration performances according to different calibration periods from one year to seven years were hard to generalize because four hydrologic models have different levels of complexity and different years have different information content of hydrological observation. Acknowledgements This research was supported by a grant (14AWMP-B082564-01) from Advanced Water Management Research Program funded by Ministry of Land, Infrastructure and Transport of Korean government.

Lineations and structural mapping of Io's paterae and mountains: Implications for internal stresses

NASA Astrophysics Data System (ADS)

Ahern, Alexandra A.; Radebaugh, Jani; Christiansen, Eric H.; Harris, Ronald A.; Tass, E. Shannon

2017-11-01

The mountains of Jupiter's volcanic moon Io are tall, steep, and tectonic in origin, yet their precise modes of formation and their associations with volcanic paterae are not fully understood. Global spatial statistics of paterae and mountains and their associated lineations reveal that both types of features are more common at low latitudes and tectonic lineations have preferred orientations, whereas straight patera margins are randomly oriented. Additionally, structurally controlled lineations tend to cluster with each other, and in areas of high concentrations these tectonic lineations are shorter in length than their global average. These results indicate that global-scale (rather than local or regional) processes are involved in forming Io's tectonic structures, but that the diversity of mountain characteristics and the collapse of paterae adjacent to mountain complexes are more locally controlled. Regional structural mapping of the Hi'iaka, Shamshu, Tohil, and Zal regions reveals Io's mountains reside in large, fault-bounded crustal blocks that have undergone modification through local responses of subsurface structures to variable stresses. Strike-slip motion along reactivated faults led to the formation of transpressional and transtensional features, creating tall peaks and low basins, some of which are now occupied by paterae. We propose Io's mountains result from a combination of crustal stresses involving global and local-scale processes, dominantly volcanic loading and tidal flexing. These stresses sometimes are oriented at oblique angles to pre-existing faults, reactivating them as reverse, normal, or strike-slip faults, modifying the large, cohesive crustal blocks that many of Io's mountains reside in. Further degradation of mountains and burial of faults has occurred from extensive volcanism, mass wasting, gravitational collapse, and erosion by sublimation and sapping of sulfur-rich layers. This model of fault-bounded blocks being modified by global stresses and local structural response accounts for the variation and patterns of mountain sizes, shapes, and orientations, along with their isolation and interactions with other features. It also provides a context for the operation and extent of global and regional stresses in shaping Io's surface.

Testing MODFLOW-LGR for simulating flow around buried Quaternary valleys - synthetic test cases

NASA Astrophysics Data System (ADS)

Vilhelmsen, T. N.; Christensen, S.

2009-12-01

In this study the Local Grid Refinement (LGR) method developed for MODFLOW-2005 (Mehl and Hill, 2005) is utilized to describe groundwater flow in areas containing buried Quaternary valley structures. The tests are conducted as comparative analysis between simulations run with a globally refined model, a locally refined model, and a globally coarse model, respectively. The models vary from simple one layer models to more complex ones with up to 25 model layers. The comparisons of accuracy are conducted within the locally refined area and focus on water budgets, simulated heads, and simulated particle traces. Simulations made with the globally refined model are used as reference (regarded as “true” values). As expected, for all test cases the application of local grid refinement resulted in more accurate results than when using the globally coarse model. A significant advantage of utilizing MODFLOW-LGR was that it allows increased numbers of model layers to better resolve complex geology within local areas. This resulted in more accurate simulations than when using either a globally coarse model grid or a locally refined model with lower geological resolution. Improved accuracy in the latter case could not be expected beforehand because difference in geological resolution between the coarse parent model and the refined child model contradicts the assumptions of the Darcy weighted interpolation used in MODFLOW-LGR. With respect to model runtimes, it was sometimes found that the runtime for the locally refined model is much longer than for the globally refined model. This was the case even when the closure criteria were relaxed compared to the globally refined model. These results are contradictory to those presented by Mehl and Hill (2005). Furthermore, in the complex cases it took some testing (model runs) to identify the closure criteria and the damping factor that secured convergence, accurate solutions, and reasonable runtimes. For our cases this is judged to be a serious disadvantage of applying MODFLOW-LGR. Another disadvantage in the studied cases was that the MODFLOW-LGR results proved to be somewhat dependent on the correction method used at the parent-child model interface. This indicates that when applying MODFLOW-LGR there is a need for thorough and case-specific considerations regarding choice of correction method. References: Mehl, S. and M. C. Hill (2005). "MODFLOW-2005, THE U.S. GEOLOGICAL SURVEY MODULAR GROUND-WATER MODEL - DOCUMENTATION OF SHARED NODE LOCAL GRID REFINEMENT (LGR) AND THE BOUNDARY FLOW AND HEAD (BFH) PACKAGE " U.S. Geological Survey Techniques and Methods 6-A12

Digital Morphing Wing: Active Wing Shaping Concept Using Composite Lattice-Based Cellular Structures.

PubMed

Jenett, Benjamin; Calisch, Sam; Cellucci, Daniel; Cramer, Nick; Gershenfeld, Neil; Swei, Sean; Cheung, Kenneth C

2017-03-01

We describe an approach for the discrete and reversible assembly of tunable and actively deformable structures using modular building block parts for robotic applications. The primary technical challenge addressed by this work is the use of this method to design and fabricate low density, highly compliant robotic structures with spatially tuned stiffness. This approach offers a number of potential advantages over more conventional methods for constructing compliant robots. The discrete assembly reduces manufacturing complexity, as relatively simple parts can be batch-produced and joined to make complex structures. Global mechanical properties can be tuned based on sub-part ordering and geometry, because local stiffness and density can be independently set to a wide range of values and varied spatially. The structure's intrinsic modularity can significantly simplify analysis and simulation. Simple analytical models for the behavior of each building block type can be calibrated with empirical testing and synthesized into a highly accurate and computationally efficient model of the full compliant system. As a case study, we describe a modular and reversibly assembled wing that performs continuous span-wise twist deformation. It exhibits high performance aerodynamic characteristics, is lightweight and simple to fabricate and repair. The wing is constructed from discrete lattice elements, wherein the geometric and mechanical attributes of the building blocks determine the global mechanical properties of the wing. We describe the mechanical design and structural performance of the digital morphing wing, including their relationship to wind tunnel tests that suggest the ability to increase roll efficiency compared to a conventional rigid aileron system. We focus here on describing the approach to design, modeling, and construction as a generalizable approach for robotics that require very lightweight, tunable, and actively deformable structures.

Digital Morphing Wing: Active Wing Shaping Concept Using Composite Lattice-Based Cellular Structures

PubMed Central

Jenett, Benjamin; Calisch, Sam; Cellucci, Daniel; Cramer, Nick; Gershenfeld, Neil; Swei, Sean

2017-01-01

Abstract We describe an approach for the discrete and reversible assembly of tunable and actively deformable structures using modular building block parts for robotic applications. The primary technical challenge addressed by this work is the use of this method to design and fabricate low density, highly compliant robotic structures with spatially tuned stiffness. This approach offers a number of potential advantages over more conventional methods for constructing compliant robots. The discrete assembly reduces manufacturing complexity, as relatively simple parts can be batch-produced and joined to make complex structures. Global mechanical properties can be tuned based on sub-part ordering and geometry, because local stiffness and density can be independently set to a wide range of values and varied spatially. The structure's intrinsic modularity can significantly simplify analysis and simulation. Simple analytical models for the behavior of each building block type can be calibrated with empirical testing and synthesized into a highly accurate and computationally efficient model of the full compliant system. As a case study, we describe a modular and reversibly assembled wing that performs continuous span-wise twist deformation. It exhibits high performance aerodynamic characteristics, is lightweight and simple to fabricate and repair. The wing is constructed from discrete lattice elements, wherein the geometric and mechanical attributes of the building blocks determine the global mechanical properties of the wing. We describe the mechanical design and structural performance of the digital morphing wing, including their relationship to wind tunnel tests that suggest the ability to increase roll efficiency compared to a conventional rigid aileron system. We focus here on describing the approach to design, modeling, and construction as a generalizable approach for robotics that require very lightweight, tunable, and actively deformable structures. PMID:28289574

Substructure Versus Property-Level Dispersed Modes Calculation

NASA Technical Reports Server (NTRS)

Stewart, Eric C.; Peck, Jeff A.; Bush, T. Jason; Fulcher, Clay W.

2016-01-01

This paper calculates the effect of perturbed finite element mass and stiffness values on the eigenvectors and eigenvalues of the finite element model. The structure is perturbed in two ways: at the "subelement" level and at the material property level. In the subelement eigenvalue uncertainty analysis the mass and stiffness of each subelement is perturbed by a factor before being assembled into the global matrices. In the property-level eigenvalue uncertainty analysis all material density and stiffness parameters of the structure are perturbed modified prior to the eigenvalue analysis. The eigenvalue and eigenvector dispersions of each analysis (subelement and property-level) are also calculated using an analytical sensitivity approximation. Two structural models are used to compare these methods: a cantilevered beam model, and a model of the Space Launch System. For each structural model it is shown how well the analytical sensitivity modes approximate the exact modes when the uncertainties are applied at the subelement level and at the property level.

Test Cases for Modeling and Validation of Structures with Piezoelectric Actuators

NASA Technical Reports Server (NTRS)

Reaves, Mercedes C.; Horta, Lucas G.

2001-01-01

A set of benchmark test articles were developed to validate techniques for modeling structures containing piezoelectric actuators using commercially available finite element analysis packages. The paper presents the development, modeling, and testing of two structures: an aluminum plate with surface mounted patch actuators and a composite box beam with surface mounted actuators. Three approaches for modeling structures containing piezoelectric actuators using the commercially available packages: MSC/NASTRAN and ANSYS are presented. The approaches, applications, and limitations are discussed. Data for both test articles are compared in terms of frequency response functions from deflection and strain data to input voltage to the actuator. Frequency response function results using the three different analysis approaches provided comparable test/analysis results. It is shown that global versus local behavior of the analytical model and test article must be considered when comparing different approaches. Also, improper bonding of actuators greatly reduces the electrical to mechanical effectiveness of the actuators producing anti-resonance errors.

Challenges in global modeling of wetland extent and wetland methane dynamics

NASA Astrophysics Data System (ADS)

Spahni, R.; Melton, J. R.; Wania, R.; Stocker, B. D.; Zürcher, S.; Joos, F.

2012-12-01

Global wetlands are known to be climate sensitive, and are the largest natural emitters of methane (CH4). Increased wetland CH4 emissions could act as a positive feedback to future warming. Modelling of global wetland extent and wetland CH4 dynamics remains a challenge. Here we present results from the Wetland and Wetland CH4 Inter-comparison of Models Project (WETCHIMP) that investigated our present ability to simulate large scale wetland characteristics (e.g. wetland type, water table, carbon cycling, gas transport, etc.) and corresponding CH4 emissions. Ten models participated, covering the spectrum from simple to relatively complex, including models tailored either for regional or global simulations. The WETCHIMP experiments showed that while models disagree in spatial and temporal patterns of simulated CH4 emissions and wetland areal extent, they all do agree on a strong positive response to increased carbon dioxide concentrations. WETCHIMP made clear that we currently lack observation data sets that are adequate to evaluate model CH4 soil-atmosphere fluxes at a spatial scale comparable to model grid cells. Thus there are substantial parameter and structural uncertainties in large-scale CH4 emission models. As an illustration of the implications of CH4 emissions on climate we show results of the LPX-Bern model, as one of the models participating in WETCHIMP. LPX-Bern is forced with observed 20th century climate and climate output from an ensemble of five comprehensive climate models for a low and a high emission scenario till 2100 AD. In the high emission scenario increased substrate availability for methanogenesis due to a strong stimulation of net primary productivity, and faster soil turnover leads to an amplification of CH4 emissions with the sharpest increase in peatlands (+180% compared to present). Combined with prescribed anthropogenic CH4 emissions, simulated atmospheric CH4 concentration reaches ~4500 ppbv by 2100 AD, about 800 ppbv more than in standard IPCC scenarios. This represents a significant contribution to radiative forcing of global climate.

Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources.

PubMed

Huang, Yingxiang; Lee, Junghye; Wang, Shuang; Sun, Jimeng; Liu, Hongfang; Jiang, Xiaoqian

2018-05-16

Data sharing has been a big challenge in biomedical informatics because of privacy concerns. Contextual embedding models have demonstrated a very strong representative capability to describe medical concepts (and their context), and they have shown promise as an alternative way to support deep-learning applications without the need to disclose original data. However, contextual embedding models acquired from individual hospitals cannot be directly combined because their embedding spaces are different, and naive pooling renders combined embeddings useless. The aim of this study was to present a novel approach to address these issues and to promote sharing representation without sharing data. Without sacrificing privacy, we also aimed to build a global model from representations learned from local private data and synchronize information from multiple sources. We propose a methodology that harmonizes different local contextual embeddings into a global model. We used Word2Vec to generate contextual embeddings from each source and Procrustes to fuse different vector models into one common space by using a list of corresponding pairs as anchor points. We performed prediction analysis with harmonized embeddings. We used sequential medical events extracted from the Medical Information Mart for Intensive Care III database to evaluate the proposed methodology in predicting the next likely diagnosis of a new patient using either structured data or unstructured data. Under different experimental scenarios, we confirmed that the global model built from harmonized local models achieves a more accurate prediction than local models and global models built from naive pooling. Such aggregation of local models using our unique harmonization can serve as the proxy for a global model, combining information from a wide range of institutions and information sources. It allows information unique to a certain hospital to become available to other sites, increasing the fluidity of information flow in health care. ©Yingxiang Huang, Junghye Lee, Shuang Wang, Jimeng Sun, Hongfang Liu, Xiaoqian Jiang. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 16.05.2018.

Ionospheric current source modeling and global geomagnetic induction using ground geomagnetic observatory data

USGS Publications Warehouse

Sun, Jin; Kelbert, Anna; Egbert, G.D.

2015-01-01

Long-period global-scale electromagnetic induction studies of deep Earth conductivity are based almost exclusively on magnetovariational methods and require accurate models of external source spatial structure. We describe approaches to inverting for both the external sources and three-dimensional (3-D) conductivity variations and apply these methods to long-period (T≥1.2 days) geomagnetic observatory data. Our scheme involves three steps: (1) Observatory data from 60 years (only partly overlapping and with many large gaps) are reduced and merged into dominant spatial modes using a scheme based on frequency domain principal components. (2) Resulting modes are inverted for corresponding external source spatial structure, using a simplified conductivity model with radial variations overlain by a two-dimensional thin sheet. The source inversion is regularized using a physically based source covariance, generated through superposition of correlated tilted zonal (quasi-dipole) current loops, representing ionospheric source complexity smoothed by Earth rotation. Free parameters in the source covariance model are tuned by a leave-one-out cross-validation scheme. (3) The estimated data modes are inverted for 3-D Earth conductivity, assuming the source excitation estimated in step 2. Together, these developments constitute key components in a practical scheme for simultaneous inversion of the catalogue of historical and modern observatory data for external source spatial structure and 3-D Earth conductivity.

Seasonal meridional energy balance and thermal structure of the atmosphere of Uranus - A radiative-convective-dynamical model

NASA Technical Reports Server (NTRS)

Friedson, James; Ingersoll, Andrew P.

1987-01-01

A model is presented for the thermodynamics of the seasonal meridional energy balance and thermal structure of the Uranian atmosphere. The model considers radiation and small-scale convection, and dynamical heat fluxes due to large-scale baroclinic eddies. Phase oscillations with a period of 0.5 Uranian year are discerned in the total internal power and global enthalpy storage. The variations in the identity of the main transport agent with the magnitude of the internal heat source are discussed. It is shown that meridional heat transport in the atmosphere is sufficient to lower seasonal horizontal temperature contrasts below those predicted with radiative-convection models.

Box Tomography: An efficient tomographic method for imaging localized structures in the deep Earth

NASA Astrophysics Data System (ADS)

Masson, Yder; Romanowicz, Barbara

2017-04-01

The accurate imaging of localized geological structures inside the deep Earth is key to understand our planet and its history. Since the introduction of the Preliminary Reference Earth Model, many generations of global tomographic models have been developed and give us access to the 3D structure of the Earth's interior. The latest generation of global tomographic models has emerged with the development of accurate numerical wavefield computations in a 3D earth combined with access to enhanced HPC capabilities. These models have sharpened up mantle images and unveiled relatively small scale structures that were blurred out in previous generation models. Fingerlike structures have been found at the base of the oceanic asthenosphere, and vertically oriented broad low velocity plume conduits [1] extend throughout the lower mantle beneath those major hotspots that are located within the perimeter of the deep mantle large low shear velocity provinces (LLSVPs). While providing new insights into our understanding of mantle dynamics, the detailed morphology of these features requires further efforts to obtain higher resolution images. In recent years, we developed a theoretical framework [2][3] for the tomographic imaging of localised geological structures buried inside the Earth, where no seismic sources nor receivers are necessarily present. We call this "box tomography" [4]. The essential difference between box-tomography and standard tomographic methods is that the numerical modeling (i.e. the raytracing in travel time tomography and the wave propagation in waveform tomography or full waveform inversion) is completely confined within the small box-region imaged. Thus, box tomography is a lot more efficient than global tomography (i.e. where we invert for the velocity in the larger volume that encompasses all the sources and receivers), for imaging localised objects. We present 2D and 3D examples showing that box tomography can be employed for imaging structures present within the D'' region at the base of the mantle. Further, we show that box-tomography performs well even in the difficult situation where the velocity distribution in the mantle above the target structure is not known a-priori. REFERENCES [1] French, S. W. and B. Romanowicz (2015) Broad Plumes at the base of the mantle beneath major hotspots, Nature, 525, 95-99 [2] Masson, Y., Cupillard, P., Capdeville, Y., & Romanowicz, B. (2013). On the numerical implementation of time-reversal mirrors for tomographic imaging. Geophysical Journal International, ggt459. [3] Masson, Y., & Romanowicz, B. (2017). Fast computation of synthetic seismograms within a medium containing remote localized perturbations: a numerical solution to the scattering problem. Geophysical Journal International, 208(2), 674-692. [4] Masson, Y., & Romanowicz, B. (2017). Box Tomography: Localised imaging of remote targets buried in an unknown medium, a step forward for understanding key structures in the deep Earth. Geophysical Journal International, (under review).

Pivot method for global optimization: A study of structures and phase changes in water clusters

NASA Astrophysics Data System (ADS)

Nigra, Pablo Fernando

In this thesis, we have carried out a study of water clusters. The research work has been developed in two stages. In the first stage, we have investigated the properties of water clusters at zero temperature by means of global optimization. The clusters were modeled by using two well known pairwise potentials having distinct characteristics. One is the Matsuoka-Clementi-Yoshimine potential (MCY) that is an ab initio fitted function based on a rigid-molecule model, the other is the Sillinger-Rahman potential (SR) which is an empirical function based on a flexible-molecule model. The algorithm used for the global optimization of the clusters was the pivot method, which was developed in our group. The results have shown that, under certain conditions, the pivot method may yield optimized structures which are related to one another in such a way that they seem to form structural families. The structures in a family can be thought of as formed from the aggregation of single units. The particular types of structures we have found are quasi-one dimensional tubes built from stacking cyclic units such as tetramers, pentamers, and hexamers. The binding energies of these tubes form sequences that span smooth curves with clear asymptotic behavior; therefore, we have also studied the sequences applying the Bulirsch-Stoer (BST) algorithm to accelerate convergence. In the second stage of the research work, we have studied the thermodynamic properties of a typical water cluster at finite temperatures. The selected cluster was the water octamer which exhibits a definite solid-liquid phase change. The water octamer also has several low lying energy cubic structures with large energetic barriers that cause ergodicity breaking in regular Monte Carlo simulations. For that reason we have simulated the octamer using paralell tempering Monte Carlo combined with the multihistogram method. This has permited us to calculate the heat capacity from very low temperatures up to T = 230 K. We have found the melting temperature to be 178.5 K. In addition, we have been able to estimate at 12 K the onset temperature of a solid-solid phase change between the two lowest energy lying isomers.

Global modeling of land water and energy balances. Part II: Land-characteristic contributions to spatial variability

USGS Publications Warehouse

Milly, P.C.D.; Shmakin, A.B.

2002-01-01

Land water and energy balances vary around the globe because of variations in amount and temporal distribution of water and energy supplies and because of variations in land characteristics. The former control (water and energy supplies) explains much more variance in water and energy balances than the latter (land characteristics). A largely untested hypothesis underlying most global models of land water and energy balance is the assumption that parameter values based on estimated geographic distributions of soil and vegetation characteristics improve the performance of the models relative to the use of globally constant land parameters. This hypothesis is tested here through an evaluation of the improvement in performance of one land model associated with the introduction of geographic information on land characteristics. The capability of the model to reproduce annual runoff ratios of large river basins, with and without information on the global distribution of albedo, rooting depth, and stomatal resistance, is assessed. To allow a fair comparison, the model is calibrated in both cases by adjusting globally constant scale factors for snow-free albedo, non-water-stressed bulk stomatal resistance, and critical root density (which is used to determine effective root-zone depth). The test is made in stand-alone mode, that is, using prescribed radiative and atmospheric forcing. Model performance is evaluated by comparing modeled runoff ratios with observed runoff ratios for a set of basins where precipitation biases have been shown to be minimal. The withholding of information on global variations in these parameters leads to a significant degradation of the capability of the model to simulate the annual runoff ratio. An additional set of optimization experiments, in which the parameters are examined individually, reveals that the stomatal resistance is, by far, the parameter among these three whose spatial variations add the most predictive power to the model in stand-alone mode. Further single-parameter experiments with surface roughness length, available water capacity, thermal conductivity, and thermal diffusivity show very little sensitivity to estimated global variations in these parameters. Finally, it is found that even the constant-parameter model performance exceeds that of the Budyko and generalized Turc-Pike water-balance equations, suggesting that the model benefits also from information on the geographic variability of the temporal structure of forcing.

An enhanced model of land water and energy for global hydrologic and earth-system studies

USGS Publications Warehouse

Milly, Paul C.D.; Malyshev, Sergey L.; Shevliakova, Elena; Dunne, Krista A.; Findell, Kirsten L.; Gleeson, Tom; Liang, Zhi; Phillips, Peter; Stouffer, Ronald J.; Swenson, Sean

2014-01-01

LM3 is a new model of terrestrial water, energy, and carbon, intended for use in global hydrologic analyses and as a component of earth-system and physical-climate models. It is designed to improve upon the performance and to extend the scope of the predecessor Land Dynamics (LaD) and LM3V models by better quantifying the physical controls of climate and biogeochemistry and by relating more directly to components of the global water system that touch human concerns. LM3 includes multilayer representations of temperature, liquid water content, and ice content of both snowpack and macroporous soil–bedrock; topography-based description of saturated area and groundwater discharge; and transport of runoff to the ocean via a global river and lake network. Sensible heat transport by water mass is accounted throughout for a complete energy balance. Carbon and vegetation dynamics and biophysics are represented as in LM3V. In numerical experiments, LM3 avoids some of the limitations of the LaD model and provides qualitatively (though not always quantitatively) reasonable estimates, from a global perspective, of observed spatial and/or temporal variations of vegetation density, albedo, streamflow, water-table depth, permafrost, and lake levels. Amplitude and phase of annual cycle of total water storage are simulated well. Realism of modeled lake levels varies widely. The water table tends to be consistently too shallow in humid regions. Biophysical properties have an artificial stepwise spatial structure, and equilibrium vegetation is sensitive to initial conditions. Explicit resolution of thick (>100 m) unsaturated zones and permafrost is possible, but only at the cost of long (≫300 yr) model spinup times.

Trainable structure-activity relationship model for virtual screening of CYP3A4 inhibition.

PubMed

Didziapetris, Remigijus; Dapkunas, Justas; Sazonovas, Andrius; Japertas, Pranas

2010-11-01

A new structure-activity relationship model predicting the probability for a compound to inhibit human cytochrome P450 3A4 has been developed using data for >800 compounds from various literature sources and tested on PubChem screening data. Novel GALAS (Global, Adjusted Locally According to Similarity) modeling methodology has been used, which is a combination of baseline global QSAR model and local similarity based corrections. GALAS modeling method allows forecasting the reliability of prediction thus defining the model applicability domain. For compounds within this domain the statistical results of the final model approach the data consistency between experimental data from literature and PubChem datasets with the overall accuracy of 89%. However, the original model is applicable only for less than a half of PubChem database. Since the similarity correction procedure of GALAS modeling method allows straightforward model training, the possibility to expand the applicability domain has been investigated. Experimental data from PubChem dataset served as an example of in-house high-throughput screening data. The model successfully adapted itself to both data classified using the same and different IC₅₀ threshold compared with the training set. In addition, adjustment of the CYP3A4 inhibition model to compounds with a novel chemical scaffold has been demonstrated. The reported GALAS model is proposed as a useful tool for virtual screening of compounds for possible drug-drug interactions even prior to the actual synthesis.

Polyhedral shape model for terrain correction of gravity and gravity gradient data based on an adaptive mesh

NASA Astrophysics Data System (ADS)

Guo, Zhikui; Chen, Chao; Tao, Chunhui

2016-04-01

Since 2007, there are four China Da yang cruises (CDCs), which have been carried out to investigate polymetallic sulfides in the southwest Indian ridge (SWIR) and have acquired both gravity data and bathymetry data on the corresponding survey lines(Tao et al., 2014). Sandwell et al. (2014) published a new global marine gravity model including the free air gravity data and its first order vertical gradient (Vzz). Gravity data and its gradient can be used to extract unknown density structure information(e.g. crust thickness) under surface of the earth, but they contain all the mass effect under the observation point. Therefore, how to get accurate gravity and its gradient effect of the existing density structure (e.g. terrain) has been a key issue. Using the bathymetry data or ETOPO1 (http://www.ngdc.noaa.gov/mgg/global/global.html) model at a full resolution to calculate the terrain effect could spend too much computation time. We expect to develop an effective method that takes less time but can still yield the desired accuracy. In this study, a constant-density polyhedral model is used to calculate the gravity field and its vertical gradient, which is based on the work of Tsoulis (2012). According to gravity field attenuation with distance and variance of bathymetry, we present an adaptive mesh refinement and coarsening strategies to merge both global topography data and multi-beam bathymetry data. The local coarsening or size of mesh depends on user-defined accuracy and terrain variation (Davis et al., 2011). To depict terrain better, triangular surface element and rectangular surface element are used in fine and coarse mesh respectively. This strategy can also be applied to spherical coordinate in large region and global scale. Finally, we applied this method to calculate Bouguer gravity anomaly (BGA), mantle Bouguer anomaly(MBA) and their vertical gradient in SWIR. Further, we compared the result with previous results in the literature. Both synthetic model tests and field applications indicate that the adaptive terrain correction method can be adopted as a rapid and accurate tool of marine gravity data processing. References Davis, K. &Kass, M.A. & Li, Y., 2011. Rapid gravity and gravity gradiometry terrain corrections via an adaptive quadtree mesh discretization, EXPLOR GEOPHYS, 42, 88-97. Sandwell, D.T., Müller, R.D., Smith, W.H., Garcia, E. & Francis, R., 2014. New global marine gravity model from CryoSat-2 and Jason-1 reveals buried tectonic structure, SCIENCE, 346, 65-67. Tao, C., Li, H., Jin, X., Zhou, J., Wu, T., He, Y., Deng, X., Gu, C., Zhang, G. & Liu, W., 2014. Seafloor hydrothermal activity and polymetallic sulfide exploration on the southwest Indian ridge, CHINESE SCI BULL, 59, 2266-2276. Tsoulis, D., 2012. Analytical computation of the full gravity tensor of a homogeneous arbitrarily shaped polyhedral source using line integrals, GEOPHYSICS, 77, F1-F11.

Long-term spatial distributions and trends of the latent heat fluxes over the global cropland ecosystem using multiple satellite-based models

PubMed Central

Feng, Fei; Yao, Yunjun; Liu, Meng

2017-01-01

Estimating cropland latent heat flux (LE) from continental to global scales is vital to modeling crop production and managing water resources. Over the past several decades, numerous LE models were developed, such as the moderate resolution imaging spectroradiometer LE (MOD16) algorithm, revised remote sensing-based Penman–Monteith LE algorithm (RRS), the Priestley–Taylor LE algorithm of the Jet Propulsion Laboratory (PT-JPL) and the modified satellite-based Priestley-Taylor LE algorithm (MS-PT). However, these LE models have not been directly compared over the global cropland ecosystem using various algorithms. In this study, we evaluated the performances of these four LE models using 34 eddy covariance (EC) sites. The results showed that mean annual LE for cropland varied from 33.49 to 58.97 W/m2 among the four models. The interannual LE slightly increased during 1982–2009 across the global cropland ecosystem. All models had acceptable performances with the coefficient of determination (R2) ranging from 0.4 to 0.7 and a root mean squared error (RMSE) of approximately 35 W/m2. MS-PT had good overall performance across the cropland ecosystem with the highest R2, lowest RMSE and a relatively low bias. The reduced performances of MOD16 and RRS, with R2 ranging from 0.4 to 0.6 and RMSEs from 30 to 39 W/m2, might be attributed to empirical parameters in the structure algorithms and calibrated coefficients. PMID:28837704

Heating Structures Derived from Satellite

NASA Technical Reports Server (NTRS)

Tao, W.-K.; Adler, R.; Haddad, Z.; Hou, A.; Kakar, R.; Krishnamurti, T. N.; Kummerow, C.; Lang, S.; Meneghini, R.; Olson, W.

2004-01-01

Rainfall is a key link in the hydrologic cycle and is a primary heat source for the atmosphere. The vertical distribution of latent-heat release, which is accompanied by rainfall, modulates the large-scale circulations of the tropics and in turn can impact midlatitude weather. This latent heat release is a consequence of phase changes between vapor, liquid, and solid water. The Tropical Rainfall Measuring Mission (TRMM), a joint U.S./Japan space project, was launched in November 1997. It provides an accurate measurement of rainfall over the global tropics which can be used to estimate the four-dimensional structure of latent heating over the global tropics. The distributions of rainfall and inferred heating can be used to advance our understanding of the global energy and water cycle. This paper describes several different algorithms for estimating latent heating using TRMM observations. The strengths and weaknesses of each algorithm as well as the heating products are also discussed. The validation of heating products will be exhibited. Finally, the application of this heating information to global circulation and climate models is presented.