Turbulence, transport, and zonal flows in the Madison symmetric torus reversed-field pinch

NASA Astrophysics Data System (ADS)

Williams, Z. R.; Pueschel, M. J.; Terry, P. W.; Hauff, T.

2017-12-01

The robustness and the effect of zonal flows in trapped electron mode (TEM) turbulence and Ion Temperature Gradient (ITG) turbulence in the reversed-field pinch (RFP) are investigated from numerical solutions of the gyrokinetic equations with and without magnetic external perturbations introduced to model tearing modes. For simulations without external magnetic field perturbations, zonal flows produce a much larger reduction of transport for the density-gradient-driven TEM turbulence than they do for the ITG turbulence. Zonal flows are studied in detail to understand the nature of their strong excitation in the RFP and to gain insight into the key differences between the TEM- and ITG-driven regimes. The zonal flow residuals are significantly larger in the RFP than in tokamak geometry due to the low safety factor. Collisionality is seen to play a significant role in the TEM zonal flow regulation through the different responses of the linear growth rate and the size of the Dimits shift to collisionality, while affecting the ITG only minimally. A secondary instability analysis reveals that the TEM turbulence drives zonal flows at a rate that is twice that of the ITG turbulence. In addition to interfering with zonal flows, the magnetic perturbations are found to obviate an energy scaling relation for fast particles.

Gyrokinetic-Vlasov simulations of the ion temperature gradient turbulence in tokamak and helical systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Watanabe, T.-H.; Sugama, H.; Graduate University for Advanced Studies

2006-11-30

Recent progress of the gyrokinetic-Vlasov simulations on the ion temperature gradient (ITG) turbulence in tokamak and helical systems is reported, where the entropy balance is checked as a reference for the numerical accuracy. The tokamak ITG turbulence simulation carried out on the Earth Simulator clearly captures a nonlinear generation process of zonal flows. The tera-flops and tera-bytes scale simulation is also applied to a helical system with the same poloidal and toroidal periodicities of L = 2 and M = 10 as in the Large Helical Device.

Fast ion stabilization of the ion temperature gradient driven modes in the Joint European Torus hybrid-scenario plasmas: a trigger mechanism for internal transport barrier formation

NASA Astrophysics Data System (ADS)

Romanelli, M.; Zocco, A.; Crisanti, F.; Contributors, JET-EFDA

2010-04-01

Understanding and modelling turbulent transport in thermonuclear fusion plasmas are crucial for designing and optimizing the operational scenarios of future fusion reactors. In this context, plasmas exhibiting state transitions, such as the formation of an internal transport barrier (ITB), are particularly interesting since they can shed light on transport physics and offer the opportunity to test different turbulence suppression models. In this paper, we focus on the modelling of ITB formation in the Joint European Torus (JET) [1] hybrid-scenario plasmas, where, due to the monotonic safety factor profile, magnetic shear stabilization cannot be invoked to explain the transition. The turbulence suppression mechanism investigated here relies on the increase in the plasma pressure gradient in the presence of a minority of energetic ions. Microstability analysis of the ion temperature gradient driven modes (ITG) in the presence of a fast-hydrogen minority shows that energetic ions accelerated by the ion cyclotron resonance heating (ICRH) system (hydrogen, nH,fast/nD,thermal up to 10%, TH,fast/TD,thermal up to 30) can increase the pressure gradient enough to stabilize the ITG modes driven by the gradient of the thermal ions (deuterium). Numerical analysis shows that, by increasing the temperature of the energetic ions, electrostatic ITG modes are gradually replaced by nearly electrostatic modes with tearing parity at progressively longer wavelengths. The growth rate of the microtearing modes is found to be lower than that of the ITG modes and comparable to the local E × B-velocity shearing rate. The above mechanism is proposed as a possible trigger for the formation of ITBs in this type of discharges.

Threshold for the destabilisation of the ion-temperature-gradient mode in magnetically confined toroidal plasmas

NASA Astrophysics Data System (ADS)

Zocco, A.; Xanthopoulos, P.; Doerk, H.; Connor, J. W.; Helander, P.

2018-02-01

The threshold for the resonant destabilisation of ion-temperature-gradient (ITG) driven instabilities that render the modes ubiquitous in both tokamaks and stellarators is investigated. We discover remarkably similar results for both confinement concepts if care is taken in the analysis of the effect of the global shear . We revisit, analytically and by means of gyrokinetic simulations, accepted tokamak results and discover inadequacies of some aspects of their theoretical interpretation. In particular, for standard tokamak configurations, we find that global shear effects on the critical gradient cannot be attributed to the wave-particle resonance destabilising mechanism of Hahm & Tang (Phys. Plasmas, vol. 1, 1989, pp. 1185-1192), but are consistent with a stabilising contribution predicted by Biglari et al. (Phys. Plasmas, vol. 1, 1989, pp. 109-118). Extensive analytical and numerical investigations show that virtually no previous tokamak theoretical predictions capture the temperature dependence of the mode frequency at marginality, thus leading to incorrect instability thresholds. In the asymptotic limit , where is the rotational transform, and such a threshold should be solely determined by the resonant toroidal branch of the ITG mode, we discover a family of unstable solutions below the previously known threshold of instability. This is true for a tokamak case described by a local local equilibrium, and for the stellarator Wendelstein 7-X, where these unstable solutions are present even for configurations with a small trapped-particle population. We conjecture they are of the Floquet type and derive their properties from the Fourier analysis of toroidal drift modes of Connor & Taylor (Phys. Fluids, vol. 30, 1987, pp. 3180-3185), and to Hill's theory of the motion of the lunar perigee (Acta Math., vol. 8, 1886, pp. 1-36). The temperature dependence of the newly determined threshold is given for both confinement concepts. In the first case, the new temperature-gradient threshold is found to be rather insensitive to the temperature ratio i/Te$ , at least for i/Te\\lesssim 1$ , and to be a growing function of the density gradient scale for i/Te\\gtrsim 1$ . For Wendelstein 7-X, the new critical temperature gradient is a growing function of the temperature ratio. The importance of these findings for the assessment of turbulence in stellarators and low-shear tokamak configurations is discussed.

Turbulent transport of alpha particles in tokamak plasmas

NASA Astrophysics Data System (ADS)

Croitoru, A.; Palade, D. I.; Vlad, M.; Spineanu, F.

2017-03-01

We investigate the \\boldsymbol{E}× \\boldsymbol{B} diffusion of fusion born α particles in tokamak plasmas. We determine the transport regimes for a realistic model that has the characteristics of the ion temperature gradient (ITG) or of the trapped electron mode (TEM) driven turbulence. It includes a spectrum of potential fluctuations that is modeled using the results of the numerical simulations, the drift of the potential with the effective diamagnetic velocity and the parallel motion. Our semi-analytical statistical approach is based on the decorrelation trajectory method (DTM), which is adapted to the gyrokinetic approximation. We obtain the transport coefficients as a function of the parameters of the turbulence and of the energy of the α particles. According to our results, significant turbulent transport of the α particles can appear only at energies of the order of 100 KeV. We determine the corresponding conditions.

Nonlinear verification of a linear critical gradient model for energetic particle transport by Alfven eigenmodes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bass, Eric M.; Waltz, R. E.

Here, a “stiff transport” critical gradient model of energetic particle (EP) transport by EPdriven Alfven eigenmodes (AEs) is verified against local nonlinear gyrokinetic simulations of a well-studied beam-heated DIII-D discharge 146102. A greatly simplifying linear “recipe” for the limiting EP-density gradient (critical gradient) is considered here. In this recipe, the critical gradient occurs when the AE linear growth rate, driven mainly by the EP gradient, exceeds the ion temperature gradient (ITG) or trapped electron mode (TEM) growth rate, driven by the thermal plasma gradient, at the same toroidal mode number (n) as the AE peak growth, well below the ITG/TEMmore » peak n. This linear recipe for the critical gradient is validated against the critical gradient determined from far more expensive local nonlinear simulations in the gyrokinetic code GYRO, as identified by the point of transport runaway when all driving gradients are held fixed. The reduced linear model is extended to include the stabilization from equilibrium E×B velocity shear. The nonlinear verification unambiguously endorses one of two alternative recipes proposed in Ref. 1: the EP-driven AE growth rate should be determined with rather than without added thermal plasma drive.« less

Nonlinear verification of a linear critical gradient model for energetic particle transport by Alfven eigenmodes

DOE PAGES

Bass, Eric M.; Waltz, R. E.

2017-12-08

Here, a “stiff transport” critical gradient model of energetic particle (EP) transport by EPdriven Alfven eigenmodes (AEs) is verified against local nonlinear gyrokinetic simulations of a well-studied beam-heated DIII-D discharge 146102. A greatly simplifying linear “recipe” for the limiting EP-density gradient (critical gradient) is considered here. In this recipe, the critical gradient occurs when the AE linear growth rate, driven mainly by the EP gradient, exceeds the ion temperature gradient (ITG) or trapped electron mode (TEM) growth rate, driven by the thermal plasma gradient, at the same toroidal mode number (n) as the AE peak growth, well below the ITG/TEMmore » peak n. This linear recipe for the critical gradient is validated against the critical gradient determined from far more expensive local nonlinear simulations in the gyrokinetic code GYRO, as identified by the point of transport runaway when all driving gradients are held fixed. The reduced linear model is extended to include the stabilization from equilibrium E×B velocity shear. The nonlinear verification unambiguously endorses one of two alternative recipes proposed in Ref. 1: the EP-driven AE growth rate should be determined with rather than without added thermal plasma drive.« less

Gyrokinetic global three-dimensional simulations of linear ion-temperature-gradient modes in Wendelstein 7-X

NASA Astrophysics Data System (ADS)

Kornilov, V.; Kleiber, R.; Hatzky, R.; Villard, L.; Jost, G.

2004-06-01

Using a global approach for solving an ion gyrokinetic model in three-dimensional geometry the linear stability and structure of ion-temperature-gradient (ITG) modes in the configuration of the stellarator Wendelstein 7-X (W7-X) [G. Grieger et al., in Plasma Physics and Controlled Nuclear Fusion Research 1990 (International Atomic Energy Agency, Vienna, 1991), Vol. 3, p. 525.] is studied. The time evolution of electrostatic perturbations is solved as an initial value problem with a particle-in-cell δf method. The vacuum magnetohydrodynamic equilibrium is calculated by the code VMEC [S. P. Hirshman and D. K. Lee, Comput. Phys. Commun. 39, 161 (1986)]. In this work the most unstable ITG mode in W7-X is presented. This mode has a pronounced ballooning-type structure; however, it is not tokamak-like. A driving mechanism analysis using the energy transfer shows that the contribution of curvature effects is non-negligible. The growth rate and the mixing-length estimate for transport are compared with those for ITG modes found in axisymmetric geometries.

Zonal flow dynamics and control of turbulent transport in stellarators.

PubMed

Xanthopoulos, P; Mischchenko, A; Helander, P; Sugama, H; Watanabe, T-H

2011-12-09

The relation between magnetic geometry and the level of ion-temperature-gradient (ITG) driven turbulence in stellarators is explored through gyrokinetic theory and direct linear and nonlinear simulations. It is found that the ITG radial heat flux is sensitive to details of the magnetic configuration that can be understood in terms of the linear behavior of zonal flows. The results throw light on the question of how the optimization of neoclassical confinement is related to the reduction of turbulence.

Comparing simulation of plasma turbulence with experiment

NASA Astrophysics Data System (ADS)

Ross, David W.; Bravenec, Ronald V.; Dorland, William; Beer, Michael A.; Hammett, G. W.; McKee, George R.; Fonck, Raymond J.; Murakami, Masanori; Burrell, Keith H.; Jackson, Gary L.; Staebler, Gary M.

2002-01-01

The direct quantitative correspondence between theoretical predictions and the measured plasma fluctuations and transport is tested by performing nonlinear gyro-Landau-fluid simulations with the GRYFFIN (or ITG) code [W. Dorland and G. W. Hammett, Phys. Fluids B 5, 812 (1993); M. A. Beer and G. W. Hammett, Phys. Plasmas 3, 4046 (1996)]. In an L-mode reference discharge in the DIII-D tokamak [J. L. Luxon and L. G. Davis, Fusion Technol. 8, 441 (1985)], which has relatively large fluctuations and transport, the turbulence is dominated by ion temperature gradient (ITG) modes. Trapped electron modes and impurity drift waves also play a role. Density fluctuations are measured by beam emission spectroscopy [R. J. Fonck, P. A. Duperrex, and S. F. Paul, Rev. Sci. Instrum. 61, 3487 (1990)]. Experimental fluxes and corresponding diffusivities are analyzed by the TRANSP code [R. J. Hawryluk, in Physics of Plasmas Close to Thermonuclear Conditions, edited by B. Coppi, G. G. Leotta, D. Pfirsch, R. Pozzoli, and E. Sindoni (Pergamon, Oxford, 1980), Vol. 1, p. 19]. The shape of the simulated wave number spectrum is close to the measured one. The simulated ion thermal transport, corrected for E×B low shear, exceeds the experimental value by a factor of 1.5 to 2.0. The simulation overestimates the density fluctuation level by an even larger factor. On the other hand, the simulation underestimates the electron thermal transport, which may be accounted for by modes that are not accessible to the simulation or to the BES measurement.

Ion temperature gradient driven transport in tokamaks with square shaping

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joiner, N.; Dorland, W.

2010-06-15

Advanced tokamak schemes which may offer significant improvement to plasma confinement on the usual large aspect ratio Dee-shaped flux surface configuration are of great interest to the fusion community. One possibility is to introduce square shaping to the flux surfaces. The gyrokinetic code GS2[Kotschenreuther et al., Comput. Phys. Commun. 88, 128 (1996)] is used to study linear stability and the resulting nonlinear thermal transport of the ion temperature gradient driven (ITG) mode in tokamak equilibria with square shaping. The maximum linear growth rate of ITG modes is increased by negative squareness (diamond shaping) and reduced by positive values (square shaping).more » The dependence of thermal transport produced by saturated ITG instabilities on squareness is not as clear. The overall trend follows that of the linear instability, heat and particle fluxes increase with negative squareness and decrease with positive squareness. This is contradictory to recent experimental results [Holcomb et al., Phys. Plasmas 16, 056116 (2009)] which show a reduction in transport with negative squareness. This may be reconciled as a reduction in transport (consistent with the experiment) is observed at small negative values of the squareness parameter.« less

Simulation of ITG instabilities with fully kinetic ions and drift-kinetic electrons in tokamaks

NASA Astrophysics Data System (ADS)

Hu, Youjun; Chen, Yang; Parker, Scott

2017-10-01

A turbulence simulation model with fully kinetic ions and drift-kinetic electrons is being developed in the toroidal electromagnetic turbulence code GEM. This is motivated by the observation that gyrokinetic ions are not well justified in simulating turbulence in tokamak edges with steep density profile, where ρi / L is not small enough to be used a small parameter needed by the gyrokinetic ordering (here ρi is the gyro-radius of ions and L is the scale length of density profile). In this case, the fully kinetic ion model may be useful. Our model uses an implicit scheme to suppress high-frequency compressional Alfven waves and waves associated with the gyro-motion of ions. The ion orbits are advanced by using the well-known Boris scheme, which reproduces correct drift-motion even with large time-step comparable to the ion gyro-period. The field equation in this model is Ampere's law with the magnetic field eliminated by using an implicit scheme of Faraday's law. The current contributed by ions are computed by using an implicit δf method. A flux tube approximation is adopted, which makes the field equation much easier to solve. Numerical results of electromagnetic ITG obtained from this model will be presented and compared with the gyrokinetic results. This work is supported by U.S. Department of Energy, Office of Fusion Energy Sciences under Award No. DE-SC0008801.

A mechanism for the formation and sustainment of the self-organized global profile and E   ×   B staircase in tokamak plasmas

NASA Astrophysics Data System (ADS)

Wang, W.; Kishimoto, Y.; Imadera, K.; Li, J. Q.; Wang, Z. X.

2018-05-01

The mechanism for the formation and sustainment of a self-organized global profile and the ‘ E   ×   B staircase’ are investigated through simulations of a flux-driven ion temperature gradient (ITG) turbulence based on GKNET, a 5D global gyrokinetic code. The staircase is found to be initiated from the radially extended ITG mode structures with nearly up-down symmetry during the saturation phase, and is established as it evolves into a quasi-steady turbulence, leading to a self-organized global temperature profile and to meso-scale isomorphic profiles of the radial electric field and the temperature gradient. It is found that the quasi-regular E   ×   B shear flow pattern is primarily originated from an even-symmetrical zonal flow produced by the extended ITG mode, which flow pattern exhibits an in-phase relation with the mean flow variation induced by the temperature relaxation. Consequently, the staircase is initiated through the profiles of total electric field and temperature gradient with a self-organized manner. Since the sign of E   ×   B shear flow at the central part are opposite to that at both edges, it disintegrates the ITG mode into smaller scale eddies. Meanwhile, smaller scale eddies tend to be aligned radially by spontaneous phase matching, which can provide the growth of mode amplitude and the formation of radially extended mode structures, leading to the bursty heat transport. This process is repeated quasi-periodically, sustaining self-organized structures and the E   ×   B staircase. Moreover, the equilibrium mean field is found to be of specific importance in causing the structures and dynamics from meso- to macro scales in toroidal plasmas.

ITG modes in the presence of inhomogeneous field-aligned flow

NASA Astrophysics Data System (ADS)

Sen, S.; McCarthy, D. R.; Lontano, M.; Lazzaro, E.; Honary, F.

2010-02-01

In a recent paper, Varischetti et al. (Plasma Phys. Contr. F. 2008, 50, 105008-1-15) have found that in a slab geometry the effect of the flow shear in the field-aligned parallel flow on the linear mode stability of the ion temperature gradient (ITG)-driven modes is not very prominent. They found that the flow shear also has a negligible effect on the mode characteristics. The work in this paper shows that the inclusion of flow curvature in the field-aligned flow can have a considerable effect on the mode stability; it can also change the mode structure so as to effect the mixing length transport in the core region of a fusion device. Flow shear, on the other hand, has indeed an insignificant role in the mode stability and mode structure. Inhomogeneous field-aligned flow should therefore still be considered for a viable candidate in controlling the ITG mode stability and mode structure.

Comparison between measured and predicted turbulence frequency spectra in ITG and TEM regimes

NASA Astrophysics Data System (ADS)

Citrin, J.; Arnichand, H.; Bernardo, J.; Bourdelle, C.; Garbet, X.; Jenko, F.; Hacquin, S.; Pueschel, M. J.; Sabot, R.

2017-06-01

The observation of distinct peaks in tokamak core reflectometry measurements—named quasi-coherent-modes (QCMs)—are identified as a signature of trapped-electron-mode (TEM) turbulence (Arnichand et al 2016 Plasma Phys. Control. Fusion 58 014037). This phenomenon is investigated with detailed linear and nonlinear gyrokinetic simulations using the Gene code. A Tore-Supra density scan is studied, which traverses through a linear (LOC) to saturated (SOC) ohmic confinement transition. The LOC and SOC phases are both simulated separately. In the LOC phase, where QCMs are observed, TEMs are robustly predicted unstable in linear studies. In the later SOC phase, where QCMs are no longer observed, ion-temperature-gradient (ITG) modes are identified. In nonlinear simulations, in the ITG (SOC) phase, a broadband spectrum is seen. In the TEM (LOC) phase, a clear emergence of a peak at the TEM frequencies is seen. This is due to reduced nonlinear frequency broadening of the underlying linear modes in the TEM regime compared with the ITG regime. A synthetic diagnostic of the nonlinearly simulated frequency spectra reproduces the features observed in the reflectometry measurements. These results support the identification of core QCMs as an experimental marker for TEM turbulence.

GTC simulations of ion temperature gradient driven instabilities in W7-X and LHD stellarators

NASA Astrophysics Data System (ADS)

Wang, Hongyu

2017-10-01

We report GTC linear simulations of ion temperature gradient (ITG) instabilities in Wendelstein 7-X (W7-X) and Large Helical Device (LHD) stellarators. GTC has recently been updated to treat 3D equilibria by interfacing with MHD equilibrium code VMEC. GTC simulations of ITG have been carried out in both full torus and partial torus taking into account the toroidal periodicity of the stellarators. The effects of toroidal mode coupling on linear dispersions and mode structures in W7-X and LHD are studied. The mode structure in W7-X is more localized in the toroidal direction, and LHD is more extended in the toroidal direction and tokamak-like. Linear growth rates, real frequencies, and mode structures agree reasonably with results of EUTERPE simulations. In collaboration with I. Holod, J. Riemann, Z. Lin, J. Bao, L. Shi, S. Taimourzadeh, R. Kleiber, and M. Borchardt.

Development and validation of a critical gradient energetic particle driven Alfven eigenmode transport model for DIII-D tilted neutral beam experiments

DOE PAGES

Waltz, Ronald E.; Bass, Eric M.; Heidbrink, William W.; ...

2015-10-30

Recent experiments with the DIII-D tilted neutral beam injection (NBI) varying the beam energetic particle (EP) source profiles have provided strong evidence that unstable Alfven eigenmodes (AE) drive stiff EP transport at a critical EP density gradient. Here the critical gradient is identified by the local AE growth rate being equal to the local ITG/TEM growth rate at the same low toroidal mode number. The growth rates are taken from the gyrokinetic code GYRO. Simulation show that the slowing down beam-like EP distribution has a slightly lower critical gradient than the Maxwellian. The ALPHA EP density transport code, used tomore » validate the model, combines the low-n stiff EP critical density gradient AE mid-core transport with the energy independent high-n ITG/TEM density transport model controling the central core EP density profile. For the on-axis NBI heated DIII-D shot 146102, while the net loss to the edge is small, about half the birth fast ions are transported from the central core r/a < 0.5 and the central density is about half the slowing down density. Lastly, these results are in good agreement with experimental fast ion pressure profiles inferred from MSE constrained EFIT equilibria.« less

Gyrokinetic theory of turbulent acceleration and momentum conservation in tokamak plasmas

NASA Astrophysics Data System (ADS)

Lu, WANG; Shuitao, PENG; P, H. DIAMOND

2018-07-01

Understanding the generation of intrinsic rotation in tokamak plasmas is crucial for future fusion reactors such as ITER. We proposed a new mechanism named turbulent acceleration for the origin of the intrinsic parallel rotation based on gyrokinetic theory. The turbulent acceleration acts as a local source or sink of parallel rotation, i.e., volume force, which is different from the divergence of residual stress, i.e., surface force. However, the order of magnitude of turbulent acceleration can be comparable to that of the divergence of residual stress for electrostatic ion temperature gradient (ITG) turbulence. A possible theoretical explanation for the experimental observation of electron cyclotron heating induced decrease of co-current rotation was also proposed via comparison between the turbulent acceleration driven by ITG turbulence and that driven by collisionless trapped electron mode turbulence. We also extended this theory to electromagnetic ITG turbulence and investigated the electromagnetic effects on intrinsic parallel rotation drive. Finally, we demonstrated that the presence of turbulent acceleration does not conflict with momentum conservation.

Full-f XGC1 gyrokinetic study of improved ion energy confinement from impurity stabilization of ITG turbulence

NASA Astrophysics Data System (ADS)

Kim, Kyuho; Kwon, Jae-Min; Chang, C. S.; Seo, Janghoon; Ku, S.; Choe, W.

2017-06-01

Flux-driven full-f gyrokinetic simulations are performed to study carbon impurity effects on the ion temperature gradient (ITG) turbulence and ion thermal transport in a toroidal geometry. Employing the full-f gyrokinetic code XGC1, both main ions and impurities are evolved self-consistently including turbulence and neoclassical physics. It is found that the carbon impurity profile self-organizes to form an inwardly peaked density profile, which weakens the ITG instabilities and reduces the overall fluctuations and ion thermal transport. A stronger reduction appears in the low frequency components of the fluctuations. The global structure of E × B flow also changes, resulting in the reduction of global avalanche like transport events in the impure plasma. Detailed properties of impurity transport are also studied, and it is revealed that both the inward neoclassical pinch and the outward turbulent transport are equally important in the formation of the steady state impurity profile.

Effects of plasma shaping on nonlinear gyrokinetic turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Belli, E. A.; Hammett, G. W.; Dorland, W.

The effects of flux surface shape on the gyrokinetic stability and transport of tokamak plasmas are studied using the GS2 code [M. Kotschenreuther, G. Rewoldt, and W. M. Tang, Comput. Phys. Commun. 88, 128 (1995); W. Dorland, F. Jenko, M. Kotschenreuther, and B. N. Rogers, Phys. Rev. Lett. 85, 5579 (2000)]. Studies of the scaling of nonlinear turbulence with shaping parameters are performed using analytic equilibria based on interpolations of representative shapes of the Joint European Torus [P. H. Rebut and B. E. Keen, Fusion Technol. 11, 13 (1987)]. High shaping is found to be a stabilizing influence on bothmore » the linear ion-temperature-gradient (ITG) instability and the nonlinear ITG turbulence. For the parameter regime studied here, a scaling of the heat flux with elongation of {chi}{approx}{kappa}{sup -1.5} or {kappa}{sup -2.0}, depending on the triangularity, is observed at fixed average temperature gradient. While this is not as strong as empirical elongation scalings, it is also found that high shaping results in a larger Dimits upshift of the nonlinear critical temperature gradient due to an enhancement of the Rosenbluth-Hinton residual zonal flows.« less

A theory of self-organized zonal flow with fine radial structure in tokamak

NASA Astrophysics Data System (ADS)

Zhang, Y. Z.; Liu, Z. Y.; Xie, T.; Mahajan, S. M.; Liu, J.

2017-12-01

The (low frequency) zonal flow-ion temperature gradient (ITG) wave system, constructed on Braginskii's fluid model in tokamak, is shown to be a reaction-diffusion-advection system; it is derived by making use of a multiple spatiotemporal scale technique and two-dimensional (2D) ballooning theory. For real regular group velocities of ITG waves, two distinct temporal processes, sharing a very similar meso-scale radial structure, are identified in the nonlinear self-organized stage. The stationary and quasi-stationary structures reflect a particular feature of the poloidal group velocity. The equation set posed to be an initial value problem is numerically solved for JET low mode parameters; the results are presented in several figures and two movies that show the spatiotemporal evolutions as well as the spectrum analysis—frequency-wave number spectrum, auto power spectrum, and Lissajous diagram. This approach reveals that the zonal flow in tokamak is a local traveling wave. For the quasi-stationary process, the cycle of ITG wave energy is composed of two consecutive phases in distinct spatiotemporal structures: a pair of Cavitons growing and breathing slowly without long range propagation, followed by a sudden decay into many Instantons that carry negative wave energy rapidly into infinity. A spotlight onto the motion of Instantons for a given radial position reproduces a Blob-Hole temporal structure; the occurrence as well as the rapid decay of Caviton into Instantons is triggered by zero-crossing of radial group velocity. A sample of the radial profile of zonal flow contributed from 31 nonlinearly coupled rational surfaces near plasma edge is found to be very similar to that observed in the JET Ohmic phase [J. C. Hillesheim et al., Phys. Rev. Lett. 116, 165002 (2016)]. The theory predicts an interior asymmetric dipole structure associated with the zonal flow that is driven by the gradients of ITG turbulence intensity.

Comparison of kinetic and extended magnetohydrodynamics computational models for the linear ion temperature gradient instability in slab geometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schnack, D. D.; Department of Physics, University of Wisconsin-Madison, Madison, Wisconsin 53706; Cheng, J.

We perform linear stability studies of the ion temperature gradient (ITG) instability in unsheared slab geometry using kinetic and extended magnetohydrodynamics (MHD) models, in the regime k{sub ∥}/k{sub ⊥}≪1. The ITG is a parallel (to B) sound wave that may be destabilized by finite ion Larmor radius (FLR) effects in the presence of a gradient in the equilibrium ion temperature. The ITG is stable in both ideal and resistive MHD; for a given temperature scale length L{sub Ti0}, instability requires that either k{sub ⊥}ρ{sub i} or ρ{sub i}/L{sub Ti0} be sufficiently large. Kinetic models capture FLR effects to all ordersmore » in either parameter. In the extended MHD model, these effects are captured only to lowest order by means of the Braginskii ion gyro-viscous stress tensor and the ion diamagnetic heat flux. We present the linear electrostatic dispersion relations for the ITG for both kinetic Vlasov and extended MHD (two-fluid) models in the local approximation. In the low frequency fluid regime, these reduce to the same cubic equation for the complex eigenvalue ω=ω{sub r}+iγ. An explicit solution is derived for the growth rate and real frequency in this regime. These are found to depend on a single non-dimensional parameter. We also compute the eigenvalues and the eigenfunctions with the extended MHD code NIMROD, and a hybrid kinetic δf code that assumes six-dimensional Vlasov ions and isothermal fluid electrons, as functions of k{sub ⊥}ρ{sub i} and ρ{sub i}/L{sub Ti0} using a spatially dependent equilibrium. These solutions are compared with each other, and with the predictions of the local kinetic and fluid dispersion relations. Kinetic and fluid calculations agree well at and near the marginal stability point, but diverge as k{sub ⊥}ρ{sub i} or ρ{sub i}/L{sub Ti0} increases. There is good qualitative agreement between the models for the shape of the unstable global eigenfunction for L{sub Ti0}/ρ{sub i}=30 and 20. The results quantify how far fluid calculations can be extended accurately into the kinetic regime. We conclude that for the linear ITG problem in slab geometry with unsheared magnetic field when k{sub ∥}/k{sub ⊥}≪1, the extended MHD model may be a reliable physical model for this problem when ρ{sub i}/L{sub Ti0}<10{sup −2} and k{sub ⊥}ρ{sub i}<0.2.« less

Isotope effects of trapped electron modes in the presence of impurities in tokamak plasmas

NASA Astrophysics Data System (ADS)

Shen, Yong; Dong, J. Q.; Sun, A. P.; Qu, H. P.; Lu, G. M.; He, Z. X.; He, H. D.; Wang, L. F.

2016-04-01

The trapped electron modes (TEMs) are numerically investigated in toroidal magnetized hydrogen, deuterium and tritium plasmas, taking into account the effects of impurity ions such as carbon, oxygen, helium, tungsten and others with positive and negative density gradients with the rigorous integral eigenmode equation. The effects of impurity ions on TEMs are investigated in detail. It is shown that impurity ions have substantially-destabilizing (stabilizing) effects on TEMs in isotope plasmas for {{L}ez}\\equiv {{L}ne}/{{L}nz}>0 (<0 ), opposite to the case of ion temperature gradient (ITG) driven modes. Detailed analyses of the isotope mass dependence for TEM turbulences in hydrogenic isotope plasmas with and without impurities are performed. The relations between the maximum growth rate of the TEMs with respect to the poloidal wave number and the ion mass number are given in the presence of the impurity ions. The results demonstrate that the maximum growth rates scale as {γ\\max}\\propto Mi-0.5 in pure hydrogenic plasmas. The scale depends on the sign of its density gradient and charge number when there is a second species of (impurity) ions. When impurity ions have density profiles peaking inwardly (i.e. {{L}ez}\\equiv {{L}ne}/{{L}nz}>0 ), the scaling also depends on ITG parameter {ηi} . The maximum growth rates scale as {γ\\max}\\propto M\\text{eff}-0.5 for the case without ITG ({ηi}=0 ) or the ITG parameter is positive ({ηi}>0 ) but the impurity ion charge number is low (Z≤slant 5.0 ). However, when {ηi}>0 and the impurity ion charge number is moderate (Z=6.0-8.0 ), the scaling law is found as {γ\\max}\\propto M\\text{eff}-1.0 . Here, Z is impurity ion charge number, and the effective mass number, {{M}\\text{eff}}=≤ft(1-{{f}z}\\right){{M}i}+{{f}z}{{M}z} , with {{M}i} and {{M}Z} being the mass numbers of the hydrogenic and impurity ions, respectively, and {{f}z}=Z{{n}0z}/{{n}0e} being the charge concentration of impurity ions. In addition, with regard to the case of {{L}ez}<0 , the maximum growth rate scaling is {γ\\max}\\propto Mi-0.5 . The possible relations of the results with experimental observations are discussed.

Development and validation of a critical gradient energetic particle driven Alfven eigenmode transport model for DIII-D tilted neutral beam experiments

NASA Astrophysics Data System (ADS)

Waltz, R. E.; Bass, E. M.; Heidbrink, W. W.; VanZeeland, M. A.

2015-11-01

Recent experiments with the DIII-D tilted neutral beam injection (NBI) varying the beam energetic particle (EP) source profiles have provided strong evidence that unstable Alfven eigenmodes (AE) drive stiff EP transport at a critical EP density gradient [Heidbrink et al 2013 Nucl. Fusion 53 093006]. Here the critical gradient is identified by the local AE growth rate being equal to the local ITG/TEM growth rate at the same low toroidal mode number. The growth rates are taken from the gyrokinetic code GYRO. Simulation show that the slowing down beam-like EP distribution has a slightly lower critical gradient than the Maxwellian. The ALPHA EP density transport code [Waltz and Bass 2014 Nucl. Fusion 54 104006], used to validate the model, combines the low-n stiff EP critical density gradient AE mid-core transport with the Angioni et al (2009 Nucl. Fusion 49 055013) energy independent high-n ITG/TEM density transport model controling the central core EP density profile. For the on-axis NBI heated DIII-D shot 146102, while the net loss to the edge is small, about half the birth fast ions are transported from the central core r/a  <  0.5 and the central density is about half the slowing down density. These results are in good agreement with experimental fast ion pressure profiles inferred from MSE constrained EFIT equilibria.

Role of turbulence regime on determining the local density gradient

DOE PAGES

Wang, X.; Mordijck, Saskia; Doyle, E. J.; ...

2017-11-16

In this study we show that the local density gradient in the plasma core depends on the calculated mode-frequency of the most unstable linear mode and reaches a maximum when this frequency is close to zero. Previous theoretical and experimental work on AUG has shown that the ratio of electron to ion temperature, and as such the frequency of the dominant linear gyrokinetic mode, affects the local density gradient close to ρ = 0.3 [1, 2]. On DIII-D we find that by adding Electron Cyclotron Heating (ECH), we modify the dominant unstable linear gyro kinetic mode from an Ion Temperaturemore » Gradient (ITG) mode to a Trapped Electron Mode (TEM), which means that the frequency of the dominant mode changes sign (from the ion to the electron direction). Local density peaking around mid-radius increases by 50% right around the cross-over between the ITG and TEM regimes. By comparing how the particle flux changes, through the derivative of the electron density, n e, with respect to time, ∂n e/∂t, we find that the particle flux also exhibits the same trend versus mode frequency. As a result, we find that the changes in local particle transport are inversely proportional to the changes in electron density, indicating that the changes are driven by a change in thermo-diffusive pinch.« less

Non-linear gyrokinetic simulations of microturbulence in TCV electron internal transport barriers

NASA Astrophysics Data System (ADS)

Lapillonne, X.; Brunner, S.; Sauter, O.; Villard, L.; Fable, E.; Görler, T.; Jenko, F.; Merz, F.

2011-05-01

Using the local (flux-tube) version of the Eulerian code GENE (Jenko et al 2000 Phys. Plasmas 7 1904), gyrokinetic simulations of microturbulence were carried out considering parameters relevant to electron-internal transport barriers (e-ITBs) in the TCV tokamak (Sauter et al 2005 Phys. Rev. Lett. 94 105002), generated under conditions of low or negative shear. For typical density and temperature gradients measured in such barriers, the corresponding simulated fluctuation spectra appears to simultaneously contain longer wavelength trapped electron modes (TEMs, for typically k⊥ρi < 0.5, k⊥ being the characteristic perpendicular wavenumber and ρi the ion Larmor radius) and shorter wavelength ion temperature gradient modes (ITG, k⊥ρi > 0.5). The contributions to the electron particle flux from these two types of modes are, respectively, outward/inward and may cancel each other for experimentally realistic gradients. This mechanism may partly explain the feasibility of e-ITBs. The non-linear simulation results confirm the predictions of a previously developed quasi-linear model (Fable et al 2010 Plasma Phys. Control. Fusion 52 015007), namely that the stationary condition of zero particle flux is obtained through the competitive contributions of ITG and TEM. A quantitative comparison of the electron heat flux with experimental estimates is presented as well.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sen, Amiya K.

The goal of this grant has been to study the basic physics of various sources of anomalous transport in tokamaks. Anomalous transport in tokamaks continues to be one of the major problems in magnetic fusion research. As a tokamak is not a physics device by design, direct experimental observation and identification of the instabilities responsible for transport, as well as physics studies of the transport in tokamaks, have been difficult and of limited value. It is noted that direct experimental observation, identification and physics study of microinstabilities including ITG, ETG, and trapped electron/ion modes in tokamaks has been very difficultmore » and nearly impossible. The primary reasons are co-existence of many instabilities, their broadband fluctuation spectra, lack of flexibility for parameter scans and absence of good local diagnostics. This has motivated us to study the suspected tokamak instabilities and their transport consequences in a simpler, steady state Columbia Linear Machine (CLM) with collisionless plasma and the flexibility of wide parameter variations. Earlier work as part of this grant was focused on both ITG turbulence, widely believed to be a primary source of ion thermal transport in tokamaks, and the effects of isotope scaling on transport levels. Prior work from our research team has produced and definitively identified both the slab and toroidal branches of this instability and determined the physics criteria for their existence. All the experimentally observed linear physics corroborate well with theoretical predictions. However, one of the large areas of research dealt with turbulent transport results that indicate some significant differences between our experimental results and most theoretical predictions. Latter years of this proposal were focused on anomalous electron transport with a special focus on ETG. There are several advanced tokamak scenarios with internal transport barriers (ITB), when the ion transport is reduced to neoclassical values by combined mechanisms of ExB and diamagnetic flow shear suppression of the ion temperature gradient (ITG) instabilities. However, even when the ion transport is strongly suppressed, the electron transport remains highly anomalous. The most plausible physics scenario for the anomalous electron transport is based on electron temperature gradient (ETG) instabilities. This instability is an electron analog of and nearly isomorphic to the ITG instability, which we had studied before extensively. However, this isomorphism is broken nonlinearily. It is noted that as the typical ETG mode growth rates are larger (in contrast to ITG modes) than ExB shearing rates in usual tokamaks, the flow shear suppression of ETG modes is highly unlikely. This motivated a broader range of investigations of other physics scenarios of nonlinear saturation and transport scaling of ETG modes.« less

Symmetry Breaking by Parallel Flow Shear

NASA Astrophysics Data System (ADS)

Li, Jiacong; Diamond, Patrick

2015-11-01

Plasma rotation is important in reducing turbulent transport, suppressing MHD instabilities, and is beneficial to confinement. Intrinsic rotation without an external momentum input is of interest for its plausible application on ITER. k∥ spectrum asymmetry is required for residual Reynolds stress that drives the intrinsic rotation. Parallel flows are reported in linear devices without magnetic shear. In CSDX, parallel flows are mostly peaked in the core [Thakur et al., 2014]; more robust flows and reversed profiles are seen in PANTA [Oldenburger, et al. 2012]. A novel mechanism for symmetry breaking in momentum transport is proposed. Magnetic shear or mean flow profile are not required. A seed parallel flow shear (PFS) sets the sign of residual stress by selecting certain modes to grow faster. The resulted spectrum imbalance leads to a nonzero residual stress, which further drives a parallel flow with ∇n as the free energy source, adding to the shear until saturated by diffusion. Balanced flow gradient is set by Π∥Res /χϕ . Residual stress is calculated for ITG turbulence and collisional drift wave turbulence where electron-ion and electron-neutral collisions are discussed and compared. Numerical simulation is proposed for testing the effect of PFS.

Steady State Global Simulations of Microturbulence

NASA Astrophysics Data System (ADS)

Lee, W. W.

2004-11-01

Critical physics issues for the steady state simulation of ion temperature gradient (ITG) drift instabilities are associated with collisionless and collisional dissipation processes. In this paper, we will report on recent investigations involving the inclusion of velocity-space nonlinearity term in our global Gyrokinetic Toroidal Code (GTC) [1]. It is important to point out that this term has not been critically examined in the turbulence simulation community [2], although it has attracted some recent interest for energy conservation considerations as well as for its effect on transport [3]. The nonlinearity in question is actually of the same order as the nonlinear zonal flow, and it can also play an interesting role in entropy balance for steady state transport [4]. Our initial results with adiabatic electrons have shown that the velocity-space nonlinearity for the ions can have a small but non-negligible effect at the early nonlinear stage of the ITG simulation. In the later stage, it can actually enhance the level of zonal flow and, in turn, can reduce the steady state thermal flux. The enhanced fluctuation of (n=0, m=1) mode has also been observed. More detailed simulation results including also collisions [5] as well as the theoretical attempt to understand the nonlinear physics of mode-coupling and entropy balance will be reported. The implication of the present work on transport time scale simulation including Alfven kinetic-MHD physics [6] will also be discussed. [1] Z. Lin, T. S. Hahm, W. W. Lee, W. M. Tang and R. White, Science, <281>, 1835 (1998). [2] W. M. Nevins et al., Plasma Microturbulence Project, this conference. [3] L. Villard et al., Nuclear Fusion <44>, 172 (2004). [4] W. W. Lee and W. M. Tang, Phys. Fluids <31>, 612 (1988). [5] Z. Lin, T. S. Hahm, W. W. Lee, W. M. Tang and R. White, Phys. Plasmas <7>, 1857 (2000). [6] W. W. Lee and H. Qin, Phys. Plasmas <10>, 3196 (2003).

Theoretical issues on the spontaneous rotation of axisymmetric plasmas

NASA Astrophysics Data System (ADS)

Coppi, B.; Zhou, T.

2014-09-01

An extensive series of experiments have confirmed that the observed ‘spontaneous rotation’ phenomenon in axisymmetric plasmas is related to the confinement properties of these plasmas and connected to the excitation of collective modes associated with these properties (Coppi 2000 18th IAEA Fusion Energy Conf. (Sorrento, Italy, 2000) THP 1/17, www-pub.iaea.org/MTCD/publications/PDF/csp_008c/html/node343.htm and Coppi 2002 Nucl. Fusion 42 1). In particular, radially localized modes can extract angular momentum from the plasma column from which they grow while the background plasma has to recoil in the direction opposite to that of the mode phase velocity. In the case of the excitation of the plasma modes at the edge, the loss of their angular momentum can be connected to the directed particle ejection to the surrounding medium. The recoil angular momentum is then redistributed inside the plasma column mainly by the combination of an effective viscous diffusion and an inward angular momentum transport velocity that is connected, for instance, to ion temperature gradient (ITG) driven modes. The linear and quasi-linear theories of the collisionless trapped electron modes and of the toroidal ITG driven modes are re-examined in the context of their influence on angular momentum transport. Internal modes that produce magnetic reconnection and are electromagnetic in nature, acquire characteristic phase velocity directions in high temperature regimes and become relevant to the ‘generation’ of angular momentum. The drift-tearing mode, the ‘complex’ reconnecting mode and the m0 = 1 internal mode belong to this category, the last mode acquiring different features depending on the strength of its driving factor. Toroidal velocity profiles that reproduce the experimental observations are obtained considering a global angular momentum balance equation that includes the localized sources associated with the excited internal electrostatic and electromagnetic modes besides the appropriate diffusive and the inward angular momentum transparent terms.

A self-organized criticality model for ion temperature gradient mode driven turbulence in confined plasma

NASA Astrophysics Data System (ADS)

Isliker, H.; Pisokas, Th.; Strintzi, D.; Vlahos, L.

2010-08-01

A new self-organized criticality (SOC) model is introduced in the form of a cellular automaton (CA) for ion temperature gradient (ITG) mode driven turbulence in fusion plasmas. Main characteristics of the model are that it is constructed in terms of the actual physical variable, the ion temperature, and that the temporal evolution of the CA, which necessarily is in the form of rules, mimics actual physical processes as they are considered to be active in the system, i.e., a heating process and a local diffusive process that sets on if a threshold in the normalized ITG R /LT is exceeded. The model reaches the SOC state and yields ion temperature profiles of exponential shape, which exhibit very high stiffness, in that they basically are independent of the loading pattern applied. This implies that there is anomalous heat transport present in the system, despite the fact that diffusion at the local level is imposed to be of a normal kind. The distributions of the heat fluxes in the system and of the heat out-fluxes are of power-law shape. The basic properties of the model are in good qualitative agreement with experimental results.

Particle transport in low-collisionality H-mode plasmas on DIII-D

DOE PAGES

Mordijck, Saskia; Wang, Xin; Doyle, Edward J.; ...

2015-10-05

In this article we show that changing from an ion temperature gradient (ITG) to trapped electron mode (TEM) dominant turbulence regime (based on linear gyrokinetic simulations) results experimentally in a strong density pump-out (defined as a reduction in line-averaged density) in low collisionality, low power H-mode plasmas. We vary the turbulence drive by changing the heating from pre-dominantly ion heatedusing neutral beam injection to electron heated using electron cyclotron heating, which changes the T e/T i ratio and the temperature gradients. Perturbed gas puff experiments show an increase in transport outside ρ = 0.6, through a strong increase in themore » perturbed diffusion coefficient and a decrease in the inward pinch. Linear gyrokinetic simulations with TGLF show an increase in the particle flux outside the mid-radius. In conjunction an increase in intermediate-scale length density fluctuations is observed, which indicates an increase in turbulence intensity at typical TEM wavelengths. However, although the experimental changes in particle transport agree with a change from ITG to TEM turbulence regimes, we do not observe a reduction in the core rotation at mid-radius, nor a rotation reversal.« less

Edge-core interaction of ITG turbulence in Tokamaks: Is the Tail Wagging the Dog?

NASA Astrophysics Data System (ADS)

Ku, S.; Chang, C. S.; Dif-Pradalier, G.; Diamond, P. H.

2010-11-01

A full-f XGC1 gyrokinetic simulation of ITG turbulence, together with the neoclassical dynamics without scale separation, has been performed for the whole-volume plasma in realistic diverted DIII-D geometry. The simulation revealed that the global structure of the turbulence and transport in tokamak plasmas results from a synergy between edge-driven inward propagation of turbulence intensity and the core-driven outward heat transport. The global ion confinement and the ion temperature gradient then self-organize quickly at turbulence propagation time scale. This synergy results in inward-outward pulse scattering leading to spontaneous production of strong internal shear layers in which the turbulent transport is almost suppressed over several radial correlation lengths. Co-existence of the edge turbulence source and the strong internal shear layer leads to radially increasing turbulence intensity and ion thermal transport profiles.

Shear-flow trapped-ion-mode interaction revisited. II. Intermittent transport associated with low-frequency zonal flow dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ghizzo, A., E-mail: alain.ghizzo@univ-lorraine.fr; Palermo, F.

We address the mechanisms underlying low-frequency zonal flow generation in turbulent system and the associated intermittent regime of ion-temperature-gradient (ITG) turbulence. This model is in connection with the recent observation of quasi periodic zonal flow oscillation at a frequency close to 2 kHz, at the low-high transition, observed in the ASDEX Upgrade [Conway et al., Phys. Rev. Lett. 106, 065001 (2011)] and EAST tokamak [Xu et al., Phys. Rev. Lett 107, 125001 (2011)]. Turbulent bursts caused by the coupling of Kelvin-Helmholtz (KH) driven shear flows with trapped ion modes (TIMs) were investigated by means of reduced gyrokinetic simulations. It was foundmore » that ITG turbulence can be regulated by low-frequency meso-scale zonal flows driven by resonant collisionless trapped ion modes (CTIMs), through parametric-type scattering, a process in competition with the usual KH instability.« less

Drift and Behavior of E. coli Cells

NASA Astrophysics Data System (ADS)

Micali, Gabriele; Colin, Rémy; Sourjik, Victor; Endres, Robert G.

2017-12-01

Chemotaxis of the bacterium Escherichia coli is well understood in shallow chemical gradients, but its swimming behavior remains difficult to interpret in steep gradients. By focusing on single-cell trajectories from simulations, we investigated the dependence of the chemotactic drift velocity on attractant concentration in an exponential gradient. While maxima of the average drift velocity can be interpreted within analytical linear-response theory of chemotaxis in shallow gradients, limits in drift due to steep gradients and finite number of receptor-methylation sites for adaptation go beyond perturbation theory. For instance, we found a surprising pinning of the cells to the concentration in the gradient at which cells run out of methylation sites. To validate the positions of maximal drift, we recorded single-cell trajectories in carefully designed chemical gradients using microfluidics.

Simulation of ion-temperature-gradient turbulence in tokamaks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cohen, B I; Dimits, A M; Kim, C

Results are presented from nonlinear gyrokinetic simulations of toroidal ion temperature gradient (ITG) turbulence and transport. The gyrokinetic simulations are found to yield values of the thermal diffusivity significantly lower than gyrofluid or IFS-PPPL-model predictions. A new phenomenon of nonlinear effective critical gradients larger than the linear instability threshold gradients is observed, and is associated with undamped flux-surface-averaged shear flows. The nonlinear gyrokineic codes have passed extensive validity tests which include comparison against independent linear calculations, a series of nonlinear convergence tests, and a comparison between two independent nonlinear gyrokinetic codes. Our most realistic simulations to date have actual reconstructedmore » equilibria from experiments and a model for dilution by impurity and beam ions. These simulations highlight the need for still more physics to be included in the simulations« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xie, T., E-mail: xietao@ustc.edu.cn; Key Laboratory of Geospace Environment, CAS, Hefei, Anhui 230026; Qin, H.

A unified ballooning theory, constructed on the basis of two special theories [Zhang et al., Phys. Fluids B 4, 2729 (1992); Y. Z. Zhang and T. Xie, Nucl. Fusion Plasma Phys. 33, 193 (2013)], shows that a weak up-down asymmetric mode structure is normally formed in an up-down symmetric equilibrium; the weak up-down asymmetry in mode structure is the manifestation of non-trivial higher order effects beyond the standard ballooning equation. It is shown that the asymmetric mode may have even higher growth rate than symmetric modes. The salient features of the theory are illustrated by investigating a fluid model formore » the ion temperature gradient (ITG) mode. The two dimensional (2D) analytical form of the ITG mode, solved in ballooning representation, is then converted into the radial-poloidal space to provide the natural boundary condition for solving the 2D mathematical local eigenmode problem. We find that the analytical expression of the mode structure is in a good agreement with finite difference solution. This sets a reliable framework for quasi-linear computation.« less

ITG-TEM turbulence simulation with bounce-averaged kinetic electrons in tokamak geometry

NASA Astrophysics Data System (ADS)

Kwon, Jae-Min; Qi, Lei; Yi, S.; Hahm, T. S.

2017-06-01

We develop a novel numerical scheme to simulate electrostatic turbulence with kinetic electron responses in magnetically confined toroidal plasmas. Focusing on ion gyro-radius scale turbulences with slower frequencies than the time scales for electron parallel motions, we employ and adapt the bounce-averaged kinetic equation to model trapped electrons for nonlinear turbulence simulation with Coulomb collisions. Ions are modeled by employing the gyrokinetic equation. The newly developed scheme is implemented on a global δf particle in cell code gKPSP. By performing linear and nonlinear simulations, it is demonstrated that the new scheme can reproduce key physical properties of Ion Temperature Gradient (ITG) and Trapped Electron Mode (TEM) instabilities, and resulting turbulent transport. The overall computational cost of kinetic electrons using this novel scheme is limited to 200%-300% of the cost for simulations with adiabatic electrons. Therefore the new scheme allows us to perform kinetic simulations with trapped electrons very efficiently in magnetized plasmas.

Multi-scale gyrokinetic simulations: Comparison with experiment and implications for predicting turbulence and transport

NASA Astrophysics Data System (ADS)

Howard, N. T.; Holland, C.; White, A. E.; Greenwald, M.; Candy, J.; Creely, A. J.

2016-05-01

To better understand the role of cross-scale coupling in experimental conditions, a series of multi-scale gyrokinetic simulations were performed on Alcator C-Mod, L-mode plasmas. These simulations, performed using all experimental inputs and realistic ion to electron mass ratio ((mi/me)1/2 = 60.0), simultaneously capture turbulence at the ion ( kθρs˜O (1.0 ) ) and electron-scales ( kθρe˜O (1.0 ) ). Direct comparison with experimental heat fluxes and electron profile stiffness indicates that Electron Temperature Gradient (ETG) streamers and strong cross-scale turbulence coupling likely exist in both of the experimental conditions studied. The coupling between ion and electron-scales exists in the form of energy cascades, modification of zonal flow dynamics, and the effective shearing of ETG turbulence by long wavelength, Ion Temperature Gradient (ITG) turbulence. The tightly coupled nature of ITG and ETG turbulence in these realistic plasma conditions is shown to have significant implications for the interpretation of experimental transport and fluctuations. Initial attempts are made to develop a "rule of thumb" based on linear physics, to help predict when cross-scale coupling plays an important role and to inform future modeling of experimental discharges. The details of the simulations, comparisons with experimental measurements, and implications for both modeling and experimental interpretation are discussed.

ITG: A New Global GNSS Tropospheric Correction Model

PubMed Central

Yao, Yibin; Xu, Chaoqian; Shi, Junbo; Cao, Na; Zhang, Bao; Yang, Junjian

2015-01-01

Tropospheric correction models are receiving increasing attentions, as they play a crucial role in Global Navigation Satellite System (GNSS). Most commonly used models to date include the GPT2 series and the TropGrid2. In this study, we analyzed the advantages and disadvantages of existing models and developed a new model called the Improved Tropospheric Grid (ITG). ITG considers annual, semi-annual and diurnal variations, and includes multiple tropospheric parameters. The amplitude and initial phase of diurnal variation are estimated as a periodic function. ITG provides temperature, pressure, the weighted mean temperature (Tm) and Zenith Wet Delay (ZWD). We conducted a performance comparison among the proposed ITG model and previous ones, in terms of meteorological measurements from 698 observation stations, Zenith Total Delay (ZTD) products from 280 International GNSS Service (IGS) station and Tm from Global Geodetic Observing System (GGOS) products. Results indicate that ITG offers the best performance on the whole. PMID:26196963

Comparison of analytical models for zonal flow generation in ion-temperature-gradient mode turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, J.; Miki, K.; Uzawa, K.

2006-11-30

During the past years the understanding of the multi scale interaction problems have increased significantly. However, at present there exists a flora of different analytical models for investigating multi scale interactions and hardly any specific comparisons have been performed among these models. In this work two different models for the generation of zonal flows from ion-temperature-gradient (ITG) background turbulence are discussed and compared. The methods used are the coherent mode coupling model and the wave kinetic equation model (WKE). It is shown that the two models give qualitatively the same results even though the assumption on the spectral difference ismore » used in the (WKE) approach.« less

The Low-Recycling Lithium Boundary and Implications for Plasma Transport

DOE Office of Scientific and Technical Information (OSTI.GOV)

Granstedt, Erik Michael

Pumping of incident hydrogen and impurity ions by lithium enables control of the particle inventory and fueling profile in magnetic-confined plasmas, and may raise the plasma temperature near the wall. As a result, the density gradient is expected to contribute substantially to the free-energy, affecting particle and thermal transport from micro-turbulence which is typically the dominant transport mechanism in high-temperature fusion experiments. Transport in gyrokinetic simulations of density-gradient-dominated profiles is characterized by a small linear critical gradient, large particle flux, and preferential diffusion of cold particles. As a result, the heat flux is below 5/2 or even 3/2 times themore » particle flux, usually assumed to be the minimum for convection. While surprising, this result is consistent with increasing entropy. Coupled TEM-ITG (ion-temperature- gradient) simulations using ηe = ηi find η = ∇T /∇n∼0.8 maximizes the linear critical pressure gradient, which suggests that experiments operating near marginal ITG stability with larger η would increase the linear critical pressure gradient by transferring free-energy from the temperature gradient to the density gradient. Simulations were performed with profiles predicted for the Lithium Tokamak Experiment (LTX) if ion thermal transport was neoclassical, while electron thermal transport and particle transport were a fixed ratio above the neoclassical level. A robust TEM instability was found for the outer half radius, while the ITG was found to be driven unstable as well during gas puff fueling. This suggests that TEM transport will be an important transport mechanism in high-temperature low-recycling fusion experiments, and in the absence of stabilizing mechanisms, may dominate over neoclassical transport. A diagnostic suite has been developed to measure hydrogen and impurity emission in LTX in order to determine the lower bound on recycling that can be achieved in a small tokamak using solid lithium coatings, assess its dependence on the operating condition of the lithium surface, and evaluate its impact on the discharge. Coatings on the close-fitting stainless-steel substrate produce a significant reduction in recyling, so that the effective particle confinement times are as low as 1 ms. Measurements of particle inventory in the plasma and hydrogen Lyman-α emission indicate that hydrogen recycling at the surface increases as subsequent discharges are performed; nevertheless, strong pumping of hydrogen is observed even after almost double the cumulative fueling is applied that should saturate the lithium coating to the penetration depth of hydrogen ions. Probe measurements show that when external fueling is terminated, the scrape-off-layer of discharges with fresh coatings decays to lower density and rises to higher electron temperature than for discharges with a partially-passivated surface, consistent with reduced edge cooling from recycled particles. Near the end of the discharge, higher plasma current correlates with reduced τp* and hydrogen emission, suggesting that discharges with fresh coatings achieve higher electron temperature in the core. A novel approach using neutral modeling was developed for the inverse problem of determining the distribution of recycled particle flux from PFC surfaces given a large number of emission measurements, revealing that extremely low levels of recycling (Rcore∼0.6 and Rplate∼0.8) have been achieved with solid lithium coatings. Together with impurity emission measurements, modeling suggests that during periods of particularly low electron density, influx of impurities from the walls contributes substantially to the global particle balance.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bardóczi, L.; Rhodes, T. L.; Carter, T. A.

We report the first observation of localized modulation of turbulent density uctuations en (via Beam Emission Spectroscopy) by neoclassical tearing modes (NTMs) in the core of the DIII-D tokamak. NTMs are important as they often lead to severe degradation of plasma confinement and disruptions in high-confinement fusion experiments. Magnetic islands associated with NTMs significantly modify the profiles and turbulence drives. In this experiment n was found to be modulated by 14% across the island. Gyrokinetic simulations suggest that en could be dominantly driven by the ion temperature gradient (ITG) instability.

A preference for mathematical processing outweighs the selectivity for Arabic numbers in the inferior temporal gyrus.

PubMed

Grotheer, Mareike; Jeska, Brianna; Grill-Spector, Kalanit

2018-03-28

A region in the posterior inferior temporal gyrus (ITG), referred to as the number form area (NFA, here ITG-numbers) has been implicated in the visual processing of Arabic numbers. However, it is unknown if this region is specifically involved in the visual encoding of Arabic numbers per se or in mathematical processing more broadly. Using functional magnetic resonance imaging (fMRI) during experiments that systematically vary tasks and stimuli, we find that mathematical processing, not preference to Arabic numbers, consistently drives both mean and distributed responses in the posterior ITG. While we replicated findings of higher responses in ITG-numbers to numbers than other visual stimuli during a 1-back task, this preference to numbers was abolished when participants engaged in mathematical processing. In contrast, an ITG region (ITG-math) that showed higher responses during an adding task vs. other tasks maintained this preference for mathematical processing across a wide range of stimuli including numbers, number/letter morphs, hands, and dice. Analysis of distributed responses across an anatomically-defined posterior ITG expanse further revealed that mathematical task but not Arabic number form can be successfully and consistently decoded from these distributed responses. Together, our findings suggest that the function of neuronal regions in the posterior ITG goes beyond the specific visual processing of Arabic numbers. We hypothesize that they ascribe numerical content to the visual input, irrespective of the format of the stimulus. Copyright © 2018 Elsevier Inc. All rights reserved.

Density and magnetic fluctuations in type III-ELM pedestal evolution in JET: experimental and numerical characterization

NASA Astrophysics Data System (ADS)

De Masi, G.; Predebon, I.; Spagnolo, S.; Meneses, L.; Delabie, E.; Lupelli, I.; Hillesheim, J. C.; Maggi, C.; Contributors, JET

2018-04-01

Density and magnetic fluctuation measurements in low-β type-III ELM discharges are obtained in the Joint European Torus (JET). They are observed during the inter-ELM pedestal evolution, after the LH transition phase, at about 60-70 kHz. Density fluctuations are measured with a correlation reflectometer system installed on the low-field side and they are localized at the pedestal top. Magnetic fluctuations with a spatial scale k_yρ_i˜ 0.1 are measured through a high resolution coil array. The main features and the relations with local plasma parameters are presented. The nature of these fluctuations is discussed along with linear gyrokinetic simulations. Ion temperature gradient (ITG) modes are the dominant instabilities in the frequency range of interest. In terms of radial localization, typical oscillation frequency and qualitative relation with the possible linear drive, ITG modes are consistent with the experimental density fluctuations measurements. Micro-tearing modes (MTMs), found unstable with a lower growth rate, appear a possible explanation for magnetic fluctuations in terms of typical wavenumbers and direction of propagation.

Long-wavelength microinstabilities in toroidal plasmas*

NASA Astrophysics Data System (ADS)

Tang, W. M.; Rewoldt, G.

1993-07-01

Realistic kinetic toroidal eigenmode calculations have been carried out to support a proper assessment of the influence of long-wavelength microturbulence on transport in tokamak plasmas. In order to efficiently evaluate large-scale kinetic behavior extending over many rational surfaces, significant improvements have been made to a toroidal finite element code used to analyze the fully two-dimensional (r,θ) mode structures of trapped-ion and toroidal ion temperature gradient (ITG) instabilities. It is found that even at very long wavelengths, these eigenmodes exhibit a strong ballooning character with the associated radial structure relatively insensitive to ion Landau damping at the rational surfaces. In contrast to the long-accepted picture that the radial extent of trapped-ion instabilities is characterized by the ion-gyroradius-scale associated with strong localization between adjacent rational surfaces, present results demonstrate that under realistic conditions, the actual scale is governed by the large-scale variations in the equilibrium gradients. Applications to recent measurements of fluctuation properties in Tokamak Fusion Test Reactor (TFTR) [Plasma Phys. Controlled Nucl. Fusion Res. (International Atomic Energy Agency, Vienna, 1985), Vol. 1, p. 29] L-mode plasmas indicate that the theoretical trends appear consistent with spectral characteristics as well as rough heuristic estimates of the transport level. Benchmarking calculations in support of the development of a three-dimensional toroidal gyrokinetic code indicate reasonable agreement with respect to both the properties of the eigenfunctions and the magnitude of the eigenvalues during the linear phase of the simulations of toroidal ITG instabilities.

Effects of particle drifts on the solar modulation of galactic cosmic rays

NASA Technical Reports Server (NTRS)

Jokipii, J. R.; Levy, E. H.

1977-01-01

Gradient and curvature drifts in an Archimedean-spiral magnetic field are shown to produce a significant effect on the modulation of galactic cosmic rays by the solar wind. The net modulation, heliocentric radial gradient, and average energy change of particles which reach the inner solar system are significantly reduced. The effects of drifts are due to the fact that cosmic rays for which the drift velocity is comparable to the wind velocity or larger, have more rapid access to the inner solar system than in the absence of drifts.

Gyrophase drifts and the orbital evolution of dust at Jupiter's Gossamer Ring

NASA Technical Reports Server (NTRS)

Northrop, T. G.; Mendis, D. A.; Schaffer, Les

1989-01-01

The 'gyrophase drift' phenomenon in Jupiter's fine-dust 'gossamer ring' is presently shown to exceed the plasma-drag drift, and may be able to move small, charged grains either toward or away from synchronous radius. The grain gyrophase drifts toward the higher temperature in the presence of a radial gradient in plasma temperature; gyrophase drift will also occur in conjunction with a radial gradient in the relative concentrations of different plasma ion species, or even due to plasma-grain velocity variation associated with the grain's cycloidal motion through the plasma. The Poynting-Robertson drift is noted to be diminutive by comparison with either the plasma-drag or gyrophase drifts.

Combined ERP/fMRI evidence for early word recognition effects in the posterior inferior temporal gyrus.

PubMed

Dien, Joseph; Brian, Eric S; Molfese, Dennis L; Gold, Brian T

2013-10-01

Two brain regions with established roles in reading are the posterior middle temporal gyrus and the posterior fusiform gyrus (FG). Lesion studies have also suggested that the region located between them, the posterior inferior temporal gyrus (pITG), plays a central role in word recognition. However, these lesion results could reflect disconnection effects since neuroimaging studies have not reported consistent lexicality effects in pITG. Here we tested whether these reported pITG lesion effects are due to disconnection effects or not using parallel Event-related Potentials (ERP)/functional magnetic resonance imaging (fMRI) studies. We predicted that the Recognition Potential (RP), a left-lateralized ERP negativity that peaks at about 200-250 msec, might be the electrophysiological correlate of pITG activity and that conditions that evoke the RP (perceptual degradation) might therefore also evoke pITG activity. In Experiment 1, twenty-three participants performed a lexical decision task (temporally flanked by supraliminal masks) while having high-density 129-channel ERP data collected. In Experiment 2, a separate group of fifteen participants underwent the same task while having fMRI data collected in a 3T scanner. Examination of the ERP data suggested that a canonical RP effect was produced. The strongest corresponding effect in the fMRI data was in the vicinity of the pITG. In addition, results indicated stimulus-dependent functional connectivity between pITG and a region of the posterior FG near the Visual Word Form Area (VWFA) during word compared to nonword processing. These results provide convergent spatiotemporal evidence that the pITG contributes to early lexical access through interaction with the VWFA. Copyright © 2013 Elsevier Ltd. All rights reserved.

Global linear gyrokinetic simulations for LHD including collisions

NASA Astrophysics Data System (ADS)

Kauffmann, K.; Kleiber, R.; Hatzky, R.; Borchardt, M.

2010-11-01

The code EUTERPE uses a Particle-In-Cell (PIC) method to solve the gyrokinetic equation globally (full radius, full flux surface) for three-dimensional equilibria calculated with VMEC. Recently this code has been extended to include multiple kinetic species and electromagnetic effects. Additionally, a pitch-angle scattering operator has been implemented in order to include collisional effects in the simulation of instabilities and to be able to simulate neoclassical transport. As a first application of this extended code we study the effects of collisions on electrostatic ion-temperature-gradient (ITG) instabilities in LHD.

Three-Dimensional Model of Heat and Mass Transfer in Fractured Rocks to Estimate Environmental Conditions Along Heated Drifts

NASA Astrophysics Data System (ADS)

Fedors, R. W.; Painter, S. L.

2004-12-01

Temperature gradients along the thermally-perturbed drifts of the potential high-level waste repository at Yucca Mountain, Nevada, will drive natural convection and associated heat and mass transfer along drifts. A three-dimensional, dual-permeability, thermohydrological model of heat and mass transfer was used to estimate the magnitude of temperature gradients along a drift. Temperature conditions along heated drifts are needed to support estimates of repository-edge cooling and as input to computational fluid dynamics modeling of in-drift axial convection and the cold-trap process. Assumptions associated with abstracted heat transfer models and two-dimensional thermohydrological models weakly coupled to mountain-scale thermal models can readily be tested using the three-dimensional thermohydrological model. Although computationally expensive, the fully coupled three-dimensional thermohydrological model is able to incorporate lateral heat transfer, including host rock processes of conduction, convection in gas phase, advection in liquid phase, and latent-heat transfer. Results from the three-dimensional thermohydrological model showed that weakly coupling three-dimensional thermal and two-dimensional thermohydrological models lead to underestimates of temperatures and underestimates of temperature gradients over large portions of the drift. The representative host rock thermal conductivity needed for abstracted heat transfer models are overestimated using the weakly coupled models. If axial flow patterns over large portions of drifts are not impeded by the strong cross-sectional flow patterns imparted by the heat rising directly off the waste package, condensation from the cold-trap process will not be limited to the extreme ends of each drift. Based on the three-dimensional thermohydrological model, axial temperature gradients occur sooner over a larger portion of the drift, though high gradients nearest the edge of the potential repository are dampened. This abstract is an independent product of CNWRA and does not necessarily reflect the view or regulatory position of the Nuclear Regulatory Commission.

Drift and separation in collisionality gradients

DOE PAGES

Ochs, I. E.; Rax, J. M.; Gueroult, R.; ...

2017-07-20

Here we identify a single-particle drift resulting from collisional interactions with a background species, in the presence of a collisionality gradient and background net flow. We also analyze this drift in different limits, showing how it reduces to the well known impurity pinch for high-Zi impurities. We find that in the low-temperature, singly ionized limit, the magnitude of the drift becomes mass-dependent and energy-dependent. Furthermore, by solving for the resulting diffusion-advection motion, we propose a mass-separation scheme that takes advantage of this drift, and analyze the separative capability as a function of collisionally dissipated energy.

Drift and separation in collisionality gradients

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ochs, I. E.; Rax, J. M.; Gueroult, R.

Here we identify a single-particle drift resulting from collisional interactions with a background species, in the presence of a collisionality gradient and background net flow. We also analyze this drift in different limits, showing how it reduces to the well known impurity pinch for high-Zi impurities. We find that in the low-temperature, singly ionized limit, the magnitude of the drift becomes mass-dependent and energy-dependent. Furthermore, by solving for the resulting diffusion-advection motion, we propose a mass-separation scheme that takes advantage of this drift, and analyze the separative capability as a function of collisionally dissipated energy.

Zebrafish Dkk3a Protein Regulates the Activity of myf5 Promoter through Interaction with Membrane Receptor Integrin α6b*

PubMed Central

Fu, Chuan-Yang; Su, Ying-Fang; Lee, Ming-Hsuan; Chang, Geen-Dong; Tsai, Huai-Jen

2012-01-01

Myogenic regulatory factor Myf5 plays important roles in muscle development. In zebrafish myf5, a microRNA (miR), termed miR-3906 or miR-In300, was reported to silence dickkopf-3-related gene (dkk3r or dkk3a), resulting in repression of myf5 promoter activity. However, the membrane receptor that interacts with ligand Dkk3a to control myf5 expression through signal transduction remains unknown. To address this question, we applied immunoprecipitation and LC-MS/MS to screen putative membrane receptors of Dkk3a, and Integrin α6b (Itgα6b) was finally identified. To further confirm this, we used cell surface binding assays, which showed that Dkk3a and Itgα6b were co-expressed at the cell membrane of HEK-293T cells. Cross-linking immunoprecipitation data also showed high affinity of Itgα6b for Dkk3a. We further proved that the β-propeller repeat domains of Itgα6b are key segments bound by Dkk3a. Moreover, when dkk3a and itgα6b mRNAs were co-injected into embryos, luciferase activity was up-regulated 4-fold greater than that of control embryos. In contrast, the luciferase activities of dkk3a knockdown embryos co-injected with itgα6b mRNA and itgα6b knockdown embryos co-injected with dkk3a mRNA were decreased in a manner similar to that in control embryos, respectively. Knockdown of itgα6b resulted in abnormal somite shape, fewer somitic cells, weaker or absent myf5 expression, and reduced the protein level of phosphorylated p38a in somites. These defective phenotypes of trunk muscular development were similar to those of dkk3a knockdown embryos. We demonstrated that the secreted ligand Dkk3a binds to the membrane receptor Itgα6b, which increases the protein level of phosphorylated p38a and activates myf5 promoter activity of zebrafish embryos during myogenesis. PMID:23024366

SciDAC Center for Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Zhihong

2013-12-18

During the first year of the SciDAC gyrokinetic particle simulation (GPS) project, the GPS team (Zhihong Lin, Liu Chen, Yasutaro Nishimura, and Igor Holod) at the University of California, Irvine (UCI) studied the tokamak electron transport driven by electron temperature gradient (ETG) turbulence, and by trapped electron mode (TEM) turbulence and ion temperature gradient (ITG) turbulence with kinetic electron effects, extended our studies of ITG turbulence spreading to core-edge coupling. We have developed and optimized an elliptic solver using finite element method (FEM), which enables the implementation of advanced kinetic electron models (split-weight scheme and hybrid model) in the SciDACmore » GPS production code GTC. The GTC code has been ported and optimized on both scalar and vector parallel computer architectures, and is being transformed into objected-oriented style to facilitate collaborative code development. During this period, the UCI team members presented 11 invited talks at major national and international conferences, published 22 papers in peer-reviewed journals and 10 papers in conference proceedings. The UCI hosted the annual SciDAC Workshop on Plasma Turbulence sponsored by the GPS Center, 2005-2007. The workshop was attended by about fifties US and foreign researchers and financially sponsored several gradual students from MIT, Princeton University, Germany, Switzerland, and Finland. A new SciDAC postdoc, Igor Holod, has arrived at UCI to initiate global particle simulation of magnetohydrodynamics turbulence driven by energetic particle modes. The PI, Z. Lin, has been promoted to the Associate Professor with tenure at UCI.« less

First steps towards modeling of ion-driven turbulence in Wendelstein 7-X

NASA Astrophysics Data System (ADS)

Warmer, F.; Xanthopoulos, P.; Proll, J. H. E.; Beidler, C. D.; Turkin, Y.; Wolf, R. C.

2018-01-01

Due to foreseen improvement of neoclassical confinement in optimised stellarators—like the newly commissioned Wendelstein 7-X (W7-X) experiment in Greifswald, Germany—it is expected that turbulence will significantly contribute to the heat and particle transport, thus posing a limit to the performance of such devices. In order to develop discharge scenarios, it is thus necessary to develop a model which could reliably capture the basic characteristics of turbulence and try to predict the levels thereof. The outcome will not only be affordable, using only a fraction of the computational cost which is normally required for repetitive direct turbulence simulations, but would also highlight important physics. In this model, we seek to describe the ion heat flux caused by ion temperature gradient (ITG) micro-turbulence, which, in certain heating scenarios, can be a strong source of free energy. With the aid of a relatively small number of state-of-the-art nonlinear gyrokinetic simulations, an initial critical gradient model (CGM) is devised, with the aim to replace an empirical model, stemming from observations in prior stellarator experiments. The novel CGM, in its present form, encapsulates all available knowledge about ion-driven 3D turbulence to date, also allowing for further important extensions, towards an accurate interpretation and prediction of the ‘anomalous’ transport. The CGM depends on the stiffness of the ITG turbulence scaling in W7-X, and implicitly includes the nonlinear zonal flow response. It is shown that the CGM is suitable for a 1D framework turbulence modeling.

Advances in stellarator gyrokinetics

NASA Astrophysics Data System (ADS)

Helander, P.; Bird, T.; Jenko, F.; Kleiber, R.; Plunk, G. G.; Proll, J. H. E.; Riemann, J.; Xanthopoulos, P.

2015-05-01

Recent progress in the gyrokinetic theory of stellarator microinstabilities and turbulence simulations is summarized. The simulations have been carried out using two different gyrokinetic codes, the global particle-in-cell code EUTERPE and the continuum code GENE, which operates in the geometry of a flux tube or a flux surface but is local in the radial direction. Ion-temperature-gradient (ITG) and trapped-electron modes are studied and compared with their counterparts in axisymmetric tokamak geometry. Several interesting differences emerge. Because of the more complicated structure of the magnetic field, the fluctuations are much less evenly distributed over each flux surface in stellarators than in tokamaks. Instead of covering the entire outboard side of the torus, ITG turbulence is localized to narrow bands along the magnetic field in regions of unfavourable curvature, and the resulting transport depends on the normalized gyroradius ρ* even in radially local simulations. Trapped-electron modes can be significantly more stable than in typical tokamaks, because of the spatial separation of regions with trapped particles from those with bad magnetic curvature. Preliminary non-linear simulations in flux-tube geometry suggest differences in the turbulence levels in Wendelstein 7-X and a typical tokamak.

Modulation of Core Turbulent Density Fluctuations by Large-Scale Neoclassical Tearing Mode Islands in the DIII-D Tokamak

DOE PAGES

Bardóczi, L.; Rhodes, T. L.; Carter, T. A.; ...

2016-05-26

We report the first observation of localized modulation of turbulent density uctuations en (via Beam Emission Spectroscopy) by neoclassical tearing modes (NTMs) in the core of the DIII-D tokamak. NTMs are important as they often lead to severe degradation of plasma confinement and disruptions in high-confinement fusion experiments. Magnetic islands associated with NTMs significantly modify the profiles and turbulence drives. In this experiment n was found to be modulated by 14% across the island. Gyrokinetic simulations suggest that en could be dominantly driven by the ion temperature gradient (ITG) instability.

The US Navy Coupled Ocean-Wave Prediction System

DTIC Science & Technology

2014-09-01

Stokes drift to be the dominant wave effect and that it increased surface drift speeds by 35% and veered the current in the direction of the wind...ocean model has been modified to incorporate the effect of the Stokes drift current, wave radiation stresses due to horizontal gradients of the momentum...for fourth-order differences for horizontal baroclinic pressure gradients and for interpolation of Coriolis terms. There is an option to use the

The effect of magnetic islands on Ion Temperature Gradient turbulence driven transport

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hill, P., E-mail: peter.hill@york.ac.uk; York Plasma Institute, Department of Physics, University of York, Heslington, York YO10 5DD; Hariri, F.

2015-04-15

In this work, we address the question of the influence of magnetic islands on the perpendicular transport due to steady-state ITG turbulence on the energy transport time scale. We demonstrate that turbulence can cross the separatrix and enhance the perpendicular transport across magnetic islands. As the perpendicular transport in the interior of the island sets the critical island size needed for growth of neoclassical tearing modes, this increased transport leads to a critical island size larger than that predicted from considering collisional conductivities, but smaller than that using anomalous effective conductivities. We find that on Bohm time scales, the turbulencemore » is able to re-establish the temperature gradient across the island for islands widths w ≲ λ{sub turb}, the turbulence correlation length. The reduction in the island flattening is estimated by comparison with simulations retaining only the perpendicular temperature and no turbulence. At intermediate island widths, comparable to λ{sub turb}, turbulence is able to maintain finite temperature gradients across the island.« less

Flux tube gyrokinetic simulations of the edge pedestal

NASA Astrophysics Data System (ADS)

Parker, Scott; Wan, Weigang; Chen, Yang

2011-10-01

The linear instabilities of DIII-D H-mode pedestal are studied with gyrokinetic micro-turbulence simulations. The simulation code GEM is an electromagnetic δf code with global tokamak geometry in the form of Miller equilibrium. Local flux tube simulations are carried out for multiple positions of two DIII-D profiles: shot #98889 and shot #131997. Near the top of the pedestal, the instability is clearly ITG. The dominant instability of the pedestal appears at the steep gradient region, and it is identified as a low frequency mode mostly driven by electron temperature gradient. The mode propagates along the electron diamagnetic direction for low n and may propagate along the ion direction for high n. At some positions near the steep gradient region, an ion instability is found which shows some characteristics of kinetic ballooning mode (KBM). These results will be compared to the results of E. Wang et al. and D. Fulton et al. in the same session. We thank R. Groebner and P. Snyder for providing experimental profiles and helpful discussions.

Nonlinear saturation of the slab ITG instability and zonal flow generation with fully kinetic ions

NASA Astrophysics Data System (ADS)

Miecnikowski, Matthew T.; Sturdevant, Benjamin J.; Chen, Yang; Parker, Scott E.

2018-05-01

Fully kinetic turbulence models are of interest for their potential to validate or replace gyrokinetic models in plasma regimes where the gyrokinetic expansion parameters are marginal. Here, we demonstrate fully kinetic ion capability by simulating the growth and nonlinear saturation of the ion-temperature-gradient instability in shearless slab geometry assuming adiabatic electrons and including zonal flow dynamics. The ion trajectories are integrated using the Lorentz force, and the cyclotron motion is fully resolved. Linear growth and nonlinear saturation characteristics show excellent agreement with analogous gyrokinetic simulations across a wide range of parameters. The fully kinetic simulation accurately reproduces the nonlinearly generated zonal flow. This work demonstrates nonlinear capability, resolution of weak gradient drive, and zonal flow physics, which are critical aspects of modeling plasma turbulence with full ion dynamics.

Comment on ``Turbulent equipartition theory of toroidal momentum pinch'' [Phys. Plasmas 15, 055902 (2008)

NASA Astrophysics Data System (ADS)

Peeters, A. G.; Angioni, C.; Strintzi, D.

2009-03-01

The comment addresses questions raised on the derivation of the momentum pinch velocity due to the Coriolis drift effect [A. G. Peeters et al., Phys. Rev. Lett. 98, 265003 (2007)]. These concern the definition of the gradient, and the scaling with the density gradient length. It will be shown that the turbulent equipartition mechanism is included within the derivation using the Coriolis drift, with the density gradient scaling being the consequence of drift terms not considered in [T. S. Hahm et al., Phys. Plasmas 15, 055902 (2008)]. Finally the accuracy of the analytic models is assessed through a comparison with the full gyrokinetic solution.

Equatorial Ionospheric Disturbance Field-Aligned Plasma Drifts Observed by C/NOFS

NASA Astrophysics Data System (ADS)

Zhang, Ruilong; Liu, Libo; Balan, N.; Le, Huijun; Chen, Yiding; Zhao, Biqiang

2018-05-01

Using C/NOFS satellite observations, this paper studies the disturbance field-aligned plasma drifts in the equatorial topside ionosphere during eight geomagnetic storms in 2011-2015. During all six storms occurred in the solstices, the disturbance field-aligned plasma drift is from winter to summer hemisphere especially in the morning-midnight local time sector and the disturbance is stronger in June solstice. The two storms occurred at equinoxes have very little effect on the field-aligned plasma drift. Using the plasma temperature data from DMSP satellites and Global Positioning System-total electron content, it is suggested that the plasma density gradient seems likely to cause the disturbance winter-to-summer plasma drift while the role of plasma temperature gradient is opposite to the observed plasma drift.

Investigations of Turbulent Transport Channels in Gyrokinetic Simulations

NASA Astrophysics Data System (ADS)

Dimits, A. M.; Candy, J.; Guttenfelder, W.; Holland, C.; Howard, N.; Nevins, W. M.; Wang, E.

2014-10-01

Magnetic-field stochasticity arises due to microtearing perturbations, which can be driven linearly or nonlinearly (in cases where they are linearly stable), even at very modest values of the plasma beta. The resulting magnetic-flutter contribution may or may not be a significant component of the overall electron (particle and thermal) transport. Investigations of the effect of ExB flow shear on electron-drift magnetic-flutter diffusion coefficient Dedr (r ,v||) using perturbed magnetic fields from simulations, using the GYRO code, of ITG turbulence show a significant effect for electrons with parallel velocities v|| surprisingly far from the resonant velocity. We further examine changes in the radial dependence of this diffusion coefficient vs. v|| and which resonant magnetic-field perturbations are important to the values and radial structure of Dedr. The resulting electron transport fluxes are compared with the simulation results. Improvements over in treating the ambipolar field in the relationship between the magnetic (or drift) diffusion coefficients and the transport have been made in these comparisons. Prepared for US DOE by LLNL under Contract DE-AC52-07NA27344, by GA under Contract DE-FG03-95ER54309, and by PPPL under Contract DE-AC02-09CH11466.

Deep sea sedimentation processes and geomorphology: Northwest Atlantic continental margin

NASA Astrophysics Data System (ADS)

Mosher, David; Campbell, Calvin; Gardner, Jim; Chaytor, Jason; Piper, David; Rebesco, Michele

2017-04-01

Deep-sea sedimentation processes impart a fundamental control on the morphology of the western North Atlantic continental margin from Blake Spur to Hudson Strait. This fact is illustrated by the variable patterns of cross-margin gradients that are based on extensive new multibeam echo-sounder data informed by subbottom profiler and seismic reflection data. Erosion by off-shelf sediment transport in turbidity currents creates gullies, canyons and channels and a steep upper slope. Amalgamation of these conduits produces singular channels and turbidite fan complexes on the lower slope, flattening slope-profile gradients. The effect is an exponentially decaying "graded" slope profile. Comparatively, sediment mass failure produces steeper upper slopes due to head scarp development and a wedging architecture to the lower slope as deposits thin in the downslope direction. This process results in either a "stepped" slope, and/or a significant downslope gradient change where MTDs pinch out. Large drift deposits created by geostrophic currents are developed all along the margin. Blake Ridge, Sackville Spur, and Hamilton Spur are large detached drifts on disparate parts of the margin. They form a linear "above grade" profile along their crests from the shelf to abyssal plain. Deeper portions of the US continental margin are dominated by the Chesapeake Drift and Hatteras Outer Ridge; both plastered elongate mounded drifts. Farther north, particularly on the Grand Banks margin, are plastered and separated drifts. These drifts form "stepped" slope profiles, where they onlap the margin. Trough-mouth fan complexes become more common along the margin with increasing latitude. Sediment deposition and retention, particularly those dominated by glacigenic debris flows, characterize these segments producing an "above grade" slope profile. Understanding these geomorphological consequences of deep sea sedimentation processes is important to extended continental shelf mapping in which gradients and gradient change is a critical metric.

The Electron Drift Instrument for MMS

NASA Astrophysics Data System (ADS)

Torbert, R. B.; Vaith, H.; Granoff, M.; Widholm, M.; Gaidos, J. A.; Briggs, B. H.; Dors, I. G.; Chutter, M. W.; Macri, J.; Argall, M.; Bodet, D.; Needell, J.; Steller, M. B.; Baumjohann, W.; Nakamura, R.; Plaschke, F.; Ottacher, H.; Hasiba, J.; Hofmann, K.; Kletzing, C. A.; Bounds, S. R.; Dvorsky, R. T.; Sigsbee, K.; Kooi, V.

2016-03-01

The Electron Drift Instrument (EDI) on the Magnetospheric Multiscale (MMS) mission measures the in-situ electric and magnetic fields using the drift of a weak beam of test electrons that, when emitted in certain directions, return to the spacecraft after one or more gyrations. This drift is related to the electric field and, to a lesser extent, the gradient in the magnetic field. Although these two quantities can be determined separately by use of different electron energies, for MMS regions of interest the magnetic field gradient contribution is negligible. As a by-product of the drift determination, the magnetic field strength and constraints on its direction are also determined. The present paper describes the scientific objectives, the experimental method, and the technical realization of the various elements of the instrument on MMS.

Towards a better understanding of critical gradients and near-marginal turbulence in burning plasma conditions

NASA Astrophysics Data System (ADS)

Holland, C.; Candy, J.; Howard, N. T.

2017-10-01

Developing accurate predictive transport models of burning plasma conditions is essential for confident prediction and optimization of next step experiments such as ITER and DEMO. Core transport in these plasmas is expected to be very small in gyroBohm-normalized units, such that the plasma should lie close to the critical gradients for onset of microturbulence instabilities. We present recent results investigating the scaling of linear critical gradients of ITG, TEM, and ETG modes as a function of parameters such as safety factor, magnetic shear, and collisionality for nominal conditions and geometry expected in ITER H-mode plasmas. A subset of these results is then compared against predictions from nonlinear gyrokinetic simulations, to quantify differences between linear and nonlinear thresholds. As part of this study, linear and nonlinear results from both GYRO and CGYRO codes will be compared against each other, as well as to predictions from the quasilinear TGLF model. Challenges arising from near-marginal turbulence dynamics are addressed. This work was supported by the US Department of Energy under US DE-SC0006957.

Stabilization of lower hybrid drift modes by finite parallel wavenumber and electron temperature gradients in field-reversed configurations

NASA Astrophysics Data System (ADS)

Farengo, R.; Guzdar, P. N.; Lee, Y. C.

1989-08-01

The effect of finite parallel wavenumber and electron temperature gradients on the lower hybrid drift instability is studied in the parameter regime corresponding to the TRX-2 device [Fusion Technol. 9, 48 (1986)]. Perturbations in the electrostatic potential and all three components of the vector potential are considered and finite beta electron orbit modifications are included. The electron temperature gradient decreases the growth rate of the instability but, for kz=0, unstable modes exist for ηe(=T'en0/Ten0)>6. Since finite kz effects completely stabilize the mode at small values of kz/ky(≂5×10-3), magnetic shear could be responsible for stabilizing the lower hybrid drift instability in field-reversed configurations.

Iron supplementation prevents a decline in iron stores and enhances strength performance in elite female volleyball players during the competitive season.

PubMed

Mielgo-Ayuso, Juan; Zourdos, Michael C; Calleja-González, Julio; Urdampilleta, Aritz; Ostojic, Sergej

2015-06-01

The primary aim of this study was to examine the effects of 11 weeks of iron supplementation on hematological and strength markers in elite female volleyball players. Twenty-two volleyball players (aged 27.0 ± 5.6 years) from 2 Spanish First National League teams participated and were counterbalanced into 1 of 2 groups based upon iron status: (i) control group (CG, n = 11); or (ii) iron treatment group (ITG, n = 11), which received 325 mg/day of ferrous sulphate daily. Subjects performed their team's regimen of training or match play every day. Both groups were tested for hematological and strength levels at 2 points: (i) baseline (T0, before preseason) and (ii) 11 weeks later (T11, post-testing). Hematological parameters were serum iron (sFe), serum ferritin (FER), transferrin saturation index (TSI), and hemoglobin (Hb); strength assessments were bench press, military press, half-squat, power clean, clean and jerk, and pull-over. CG experienced a significant decrease (p < 0.05) for sFe (T0, 112.7 ± 31.5; T11, 69.0 ± 20.5 μg·dL(-1); -33.9%), FER (T0, 60.2 ± 28.6; T11, 38.2 ± 16.4 ng·mL(-1); -34.6%), TSI (T0, 29.4% ± 9.5%; T11, 17.4% ± 5.1%; -35.3%), and Hb (T0, 14.1 ± 1.0; T11, 13.0 ± 0.8 g·L(-1); -7.44%); however, ITG experienced no changes (p > 0.05). Consequently, in ITG all hematological parameters were significantly greater (p < 0.05) than CG at T11. There was greater (p < 0.05) percent increase in the clean and jerk (CG: +5.1% ± 20.9 vs. ITG: +29.0% ± 21.3%), power clean (CG: -5.8% ± 30.3% vs. ITG: +44.6% ± 56.6%), and total mean strength (CG: +10.9% ± 3.2% vs. ITG: +26.2% ± 3.6%) in ITG. Our findings suggest that oral iron supplementation prevents iron loss and enhances strength in female volleyball players during the competitive season.

Gyrokinetic analysis of pedestal transport

NASA Astrophysics Data System (ADS)

Kotschenreuther, Mike; Liu, X.; Hatch, Dr; Zheng, Lj; Mahajan, S.; Diallo, A.; Groebner, Rj; Hubbard, Ae; Hughes, Jw; Maggi, Cf; Saarelma, S.; JET Contributors

2017-10-01

Surprisingly, basic considerations can determine which modes are responsible for pedestal energy transport (e.g., KBM, ETG, ITG, MTM etc.). Gyrokinetic simulations of experiments, and analysis of the Gyrokinetic-Maxwell equations, find that each mode type produces characteristic ratios of transport in the various channels: density, heat and impurities. This, together with the relative size of the driving sources of each channel, can strongly constrain or determine the dominant modes causing energy transport. MHD-like modes are not the dominant agent of energy transport - when the density source is weak as is often expected. Drift modes must fill this role. Detailed examination of experimental observations, including frequency and transport channel behavior, with simulations, demonstrates these points. Also see related posters by X. Liu, D.R. Hatch, and A. Blackmon. Work supported by US DOE under DE-FC02-04ER54698, DE-FG02-04ER54742 and DE-FC02-99ER54512 and by Eurofusion under Grant No. 633053.

Introduction - Background, Goal and Content of the Lecture Series on Polarimetric SAR Interferometry

DTIC Science & Technology

2007-02-01

Information on EUSAR is available under: www.vde.de/ VDE /Fachgesellschaften/ITG/Publikationen/KonferenzUndFachberichte There are for each EUSAR...in 2003.Memberships: IEEE-GRSS (Fellow) Awards Committee; VDE /ITG; DGON; Electromagnetic Academy (US); Consultant for several EU –Projects; Guest

Geomorphology of the Eastern North American Continental Margin: the role of deep sea sedimentation processes

NASA Astrophysics Data System (ADS)

Mosher, D. C.; Campbell, C.; Piper, D.; Chaytor, J. D.; Gardner, J. V.; Rebesco, M.

2016-12-01

Deep-sea sedimentation processes impart a fundamental control on the morphology of the western North Atlantic continental margin from Blake Spur to Hudson Strait. This fact is illustrated by the variable patterns of cross-margin gradients that are based on extensive new multibeam echo-sounder data in concert with subbottom profiler and seismic reflection data. Most of the continental margin has a steep (>3o) upper slope down to 1500 to 2500 m and then a gradual middle and lower slope with a general concave upward shape There is a constant interplay of deep sea sedimentation processes, but the general morphology is dictated by the dominant one. Erosion by off-shelf sediment transport in turbidity currents creating channels, gullies and canyons creates the steep upper slope. These gullies and canyons amalgamate to form singular channels that are conduits to the abyssal plain. This process results in a general seaward flattening of gradients, producing an exponentially decaying slope profile. Comparatively, sediment mass failure produces steeper upper slopes due to head scarp development and a wedging architecture to the lower slope as deposits thin in the downslope direction. This process results in either a two-segment slope, and/or a significant downslope gradient change where MTDs pinch out. Large sediment bodies deposited by contour-following currents are developed all along the margin. Blake Ridge, Sackville Spur, and Hamilton Spur are large detached drifts on disparate parts of the margin. Along their crests, they form a linear profile from the shelf to abyssal plain. Deeper portions of the US continental margin are dominated by the Chesapeake Drift and Hatteras Outer Ridge; both plastered elongate mounded drifts. Farther north, particularly on the Grand Banks margin, are plastered and separated drifts. These drifts tend to form bathymetric steps in profile, where they onlap the margin. Stacked drifts create several steps. Turbidites of the abyssal plain onlap the lowermost drift creating a significant gradient change at this juncture. Understanding the geomorphological consequences of deep sea sedimentation processes is important to extended continental shelf mapping, for example, in which gradient change is a critical metric.

What happens to full-f gyrokinetic transport and turbulence in a toroidal wedge simulation?

DOE PAGES

Kim, Kyuho; Chang, C. S.; Seo, Janghoon; ...

2017-01-24

Here, in order to save the computing time or to fit the simulation size into a limited computing hardware in a gyrokinetic turbulence simulation of a tokamak plasma, a toroidal wedge simulation may be utilized in which only a partial toroidal section is modeled with a periodic boundary condition in the toroidal direction. The most severe restriction in the wedge simulation is expected to be in the longest wavelength turbulence, i.e., ion temperature gradient (ITG) driven turbulence. The global full-f gyrokinetic code XGC1 is used to compare the transport and turbulence properties from a toroidal wedge simulation against the fullmore » torus simulation in an ITG unstable plasma in a model toroidal geometry. It is found that (1) the convergence study in the wedge number needs to be conducted all the way down to the full torus in order to avoid a false convergence, (2) a reasonably accurate simulation can be performed if the correct wedge number N can be identified, (3) the validity of a wedge simulation may be checked by performing a wave-number spectral analysis of the turbulence amplitude |δΦ| and assuring that the variation of δΦ between the discrete kθ values is less than 25% compared to the peak |δΦ|, and (4) a frequency spectrum may not be used for the validity check of a wedge simulation.« less

What happens to full-f gyrokinetic transport and turbulence in a toroidal wedge simulation?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Kyuho; Chang, C. S.; Seo, Janghoon

Here, in order to save the computing time or to fit the simulation size into a limited computing hardware in a gyrokinetic turbulence simulation of a tokamak plasma, a toroidal wedge simulation may be utilized in which only a partial toroidal section is modeled with a periodic boundary condition in the toroidal direction. The most severe restriction in the wedge simulation is expected to be in the longest wavelength turbulence, i.e., ion temperature gradient (ITG) driven turbulence. The global full-f gyrokinetic code XGC1 is used to compare the transport and turbulence properties from a toroidal wedge simulation against the fullmore » torus simulation in an ITG unstable plasma in a model toroidal geometry. It is found that (1) the convergence study in the wedge number needs to be conducted all the way down to the full torus in order to avoid a false convergence, (2) a reasonably accurate simulation can be performed if the correct wedge number N can be identified, (3) the validity of a wedge simulation may be checked by performing a wave-number spectral analysis of the turbulence amplitude |δΦ| and assuring that the variation of δΦ between the discrete kθ values is less than 25% compared to the peak |δΦ|, and (4) a frequency spectrum may not be used for the validity check of a wedge simulation.« less

Ion-scale turbulence in MAST: anomalous transport, subcritical transitions, and comparison to BES measurements

NASA Astrophysics Data System (ADS)

van Wyk, F.; Highcock, E. G.; Field, A. R.; Roach, C. M.; Schekochihin, A. A.; Parra, F. I.; Dorland, W.

2017-11-01

We investigate the effect of varying the ion temperature gradient (ITG) and toroidal equilibrium scale sheared flow on ion-scale turbulence in the outer core of MAST by means of local gyrokinetic simulations. We show that nonlinear simulations reproduce the experimental ion heat flux and that the experimentally measured values of the ITG and the flow shear lie close to the turbulence threshold. We demonstrate that the system is subcritical in the presence of flow shear, i.e., the system is formally stable to small perturbations, but transitions to a turbulent state given a large enough initial perturbation. We propose that the transition to subcritical turbulence occurs via an intermediate state dominated by low number of coherent long-lived structures, close to threshold, which increase in number as the system is taken away from the threshold into the more strongly turbulent regime, until they fill the domain and a more conventional turbulence emerges. We show that the properties of turbulence are effectively functions of the distance to threshold, as quantified by the ion heat flux. We make quantitative comparisons of correlation lengths, times, and amplitudes between our simulations and experimental measurements using the MAST BES diagnostic. We find reasonable agreement of the correlation properties, most notably of the correlation time, for which significant discrepancies were found in previous numerical studies of MAST turbulence.

Advances in the simulation of toroidal gyro-Landau fluid model turbulence

NASA Astrophysics Data System (ADS)

Waltz, R. E.; Kerbel, G. D.; Milovich, J.; Hammett, G. W.

1995-06-01

The gyro-Landau fluid (GLF) model equations for toroidal geometry [R. E. Waltz, R. R. Dominguez, and G. W. Hammett, Phys. Fluids B 4, 3138 (1992)] have been recently applied to study ion temperature gradient (ITG) mode turbulence using the three-dimensional (3-D) nonlinear ballooning mode representation (BMR) outlined earlier [R. E. Waltz, G. D. Kerbel, and J. Milovich, Phys. Plasmas 1, 2229 (1994)]. The present paper extends this work by treating some unresolved issues concerning ITG turbulence with adiabatic electrons. Although eddies are highly elongated in the radial direction, long time radial correlation lengths are short and comparable to poloidal lengths. Although transport at vanishing shear is not particularly large, transport at reverse global shear, is significantly less. Electrostatic transport at moderate shear is not much affected by inclusion of local shear and average favorable curvature. Transport is suppressed when critical E×B rotational shear is comparable to the maximum linear growth rate with only a weak dependence on magnetic shear. Self-consistent turbulent transport of toroidal momentum can result in a transport bifurcation at sufficiently large r/(Rq). However, the main thrust of the new formulation in the paper deals with advances in the development of finite beta GLF models with trapped electrons and BMR numerical methods for treating the fast parallel field motion of the untrapped electrons.

Attraction of Rotors to the Pulmonary Veins in Paroxysmal Atrial Fibrillation: A Modeling Study

PubMed Central

Calvo, Conrado J.; Deo, Makarand; Zlochiver, Sharon; Millet, José; Berenfeld, Omer

2014-01-01

Maintenance of paroxysmal atrial fibrillation (AF) by fast rotors in the left atrium (LA) or at the pulmonary veins (PVs) is not fully understood. To gain insight into this dynamic and complex process, we studied the role of the heterogeneous distribution of transmembrane currents in the PVs and LA junction (PV-LAJ) in the localization of rotors in the PVs. We also investigated whether simple pacing protocols could be used to predict rotor drift in the PV-LAJ. Experimentally observed heterogeneities in IK1, IKs, IKr, Ito, and ICaL in the PV-LAJ were incorporated into two- and pseudo three-dimensional models of Courtemanche-Ramirez-Nattel-Kneller human atrial kinetics to simulate various conditions and investigate rotor drifting mechanisms. Spatial gradients in the currents resulted in shorter action potential duration, minimum diastolic potential that was less negative, and slower upstroke and conduction velocity for rotors in the PV region than in the LA. Rotors under such conditions drifted toward the PV and stabilized at the shortest action potential duration and less-excitable region, consistent with drift direction under intercellular coupling heterogeneities and regardless of the geometrical constraint in the PVs. Simulations with various IK1 gradient conditions and current-voltage relationships substantiated its major role in the rotor drift. In our 1:1 pacing protocol, we found that among various action potential properties, only the minimum diastolic potential gradient was a rate-independent predictor of rotor drift direction. Consistent with experimental and clinical AF studies, simulations in an electrophysiologically heterogeneous model of the PV-LAJ showed rotor attraction toward the PV. Our simulations suggest that IK1 heterogeneity is dominant compared to other currents in determining the drift direction through its impact on the excitability gradient. These results provide a believed novel framework for understanding the complex dynamics of rotors in AF. PMID:24739180

Attraction of rotors to the pulmonary veins in paroxysmal atrial fibrillation: a modeling study.

PubMed

Calvo, Conrado J; Deo, Makarand; Zlochiver, Sharon; Millet, José; Berenfeld, Omer

2014-04-15

Maintenance of paroxysmal atrial fibrillation (AF) by fast rotors in the left atrium (LA) or at the pulmonary veins (PVs) is not fully understood. To gain insight into this dynamic and complex process, we studied the role of the heterogeneous distribution of transmembrane currents in the PVs and LA junction (PV-LAJ) in the localization of rotors in the PVs. We also investigated whether simple pacing protocols could be used to predict rotor drift in the PV-LAJ. Experimentally observed heterogeneities in IK1, IKs, IKr, Ito, and ICaL in the PV-LAJ were incorporated into two- and pseudo three-dimensional models of Courtemanche-Ramirez-Nattel-Kneller human atrial kinetics to simulate various conditions and investigate rotor drifting mechanisms. Spatial gradients in the currents resulted in shorter action potential duration, minimum diastolic potential that was less negative, and slower upstroke and conduction velocity for rotors in the PV region than in the LA. Rotors under such conditions drifted toward the PV and stabilized at the shortest action potential duration and less-excitable region, consistent with drift direction under intercellular coupling heterogeneities and regardless of the geometrical constraint in the PVs. Simulations with various IK1 gradient conditions and current-voltage relationships substantiated its major role in the rotor drift. In our 1:1 pacing protocol, we found that among various action potential properties, only the minimum diastolic potential gradient was a rate-independent predictor of rotor drift direction. Consistent with experimental and clinical AF studies, simulations in an electrophysiologically heterogeneous model of the PV-LAJ showed rotor attraction toward the PV. Our simulations suggest that IK1 heterogeneity is dominant compared to other currents in determining the drift direction through its impact on the excitability gradient. These results provide a believed novel framework for understanding the complex dynamics of rotors in AF. Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

78 FR 75400 - Self-Regulatory Organizations; National Securities Clearing Corporation; Notice of No Objection...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-12-11

... Technology Group Inc. (``ITG''), dated April 25, 2013 (``ITG Letter I''); Matthew S. Levine, Managing...'') and September 5, 2013 (``Citadel Letter IV''); and Mark Solomon, Managing Director and Deputy General... well as one industry trade group, SIFMA.\\22\\ NSCC also submitted two responses to comment letters...

78 FR 75413 - Self-Regulatory Organizations; National Securities Clearing Corporation; Order Approving Proposed...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-12-11

..., Bracewell & Giuliani LLP, on behalf of Investment Technology Group, Inc. (``ITG''), dated April 25, 2013... (``Citadel Letter IV''); and Mark Solomon, Managing Director and Deputy General Counsel, ITG, dated August 5... well as one industry trade group, SIFMA.\\23\\ NSCC also submitted two responses to comment letters...

The search for the number form area: A functional neuroimaging meta-analysis.

PubMed

Yeo, Darren J; Wilkey, Eric D; Price, Gavin R

2017-07-01

Recent studies report a putative "number form area" (NFA) in the inferior temporal gyrus (ITG) suggested to be specialized for Arabic numeral processing. However, a number of earlier studies report no such NFA. The reasons for such discrepancies across studies are unclear. To examine evidence for a convergent NFA across studies, we conducted two activation likelihood estimation meta-analyses on 31 and a subset of 20 neuroimaging studies that have contrasted digits with other meaningful symbols. Results suggest the potential existence of an NFA in the right ITG, in addition to a 'symbolic number processing network' comprising bilateral parietal regions, and right-lateralized superior and inferior frontal regions. Critically, convergent localization for the NFA was only evident when contrasts were appropriately controlled for task demands, and does not appear to depend on employing methods designed to overcome fMRI signal dropout in the ITG. Importantly, only five studies had foci within the identified ITG NFA cluster boundary, indicating that more empirical evidence is necessary to determine the true functional specialization and regional specificity of the putative NFA. Copyright © 2017 Elsevier Ltd. All rights reserved.

A study of self organized criticality in ion temperature gradient mode driven gyrokinetic turbulence

NASA Astrophysics Data System (ADS)

Mavridis, M.; Isliker, H.; Vlahos, L.; Görler, T.; Jenko, F.; Told, D.

2014-10-01

An investigation on the characteristics of self organized criticality (Soc) in ITG mode driven turbulence is made, with the use of various statistical tools (histograms, power spectra, Hurst exponents estimated with the rescaled range analysis, and the structure function method). For this purpose, local non-linear gyrokinetic simulations of the cyclone base case scenario are performed with the GENE software package. Although most authors concentrate on global simulations, which seem to be a better choice for such an investigation, we use local simulations in an attempt to study the locally underlying mechanisms of Soc. We also study the structural properties of radially extended structures, with several tools (fractal dimension estimate, cluster analysis, and two dimensional autocorrelation function), in order to explore whether they can be characterized as avalanches. We find that, for large enough driving temperature gradients, the local simulations exhibit most of the features of Soc, with the exception of the probability distribution of observables, which show a tail, yet they are not of power-law form. The radial structures have the same radial extent at all temperature gradients examined; radial motion (transport) though appears only at large temperature gradients, in which case the radial structures can be interpreted as avalanches.

A study of self organized criticality in ion temperature gradient mode driven gyrokinetic turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mavridis, M.; Isliker, H.; Vlahos, L.

2014-10-15

An investigation on the characteristics of self organized criticality (Soc) in ITG mode driven turbulence is made, with the use of various statistical tools (histograms, power spectra, Hurst exponents estimated with the rescaled range analysis, and the structure function method). For this purpose, local non-linear gyrokinetic simulations of the cyclone base case scenario are performed with the GENE software package. Although most authors concentrate on global simulations, which seem to be a better choice for such an investigation, we use local simulations in an attempt to study the locally underlying mechanisms of Soc. We also study the structural properties ofmore » radially extended structures, with several tools (fractal dimension estimate, cluster analysis, and two dimensional autocorrelation function), in order to explore whether they can be characterized as avalanches. We find that, for large enough driving temperature gradients, the local simulations exhibit most of the features of Soc, with the exception of the probability distribution of observables, which show a tail, yet they are not of power-law form. The radial structures have the same radial extent at all temperature gradients examined; radial motion (transport) though appears only at large temperature gradients, in which case the radial structures can be interpreted as avalanches.« less

Turbulent transport stabilization by ICRH minority fast ions in low rotating JET ILW L-mode plasmas

NASA Astrophysics Data System (ADS)

Bonanomi, N.; Mantica, P.; Di Siena, A.; Delabie, E.; Giroud, C.; Johnson, T.; Lerche, E.; Menmuir, S.; Tsalas, M.; Van Eester, D.; Contributors, JET

2018-05-01

The first experimental demonstration that fast ion induced stabilization of thermal turbulent transport takes place also at low values of plasma toroidal rotation has been obtained in JET ILW (ITER-like wall) L-mode plasmas with high (3He)-D ICRH (ion cyclotron resonance heating) power. A reduction of the gyro-Bohm normalized ion heat flux and higher values of the normalized ion temperature gradient have been observed at high ICRH power and low NBI (neutral beam injection) power and plasma rotation. Gyrokinetic simulations indicate that ITG (ion temperature gradient) turbulence stabilization induced by the presence of high-energetic 3He ions is the key mechanism in order to explain the experimental observations. Two main mechanisms have been identified to be responsible for the turbulence stabilization: a linear electrostatic wave-fast particle resonance mechanism and a nonlinear electromagnetic mechanism. The dependence of the stabilization on the 3He distribution function has also been studied.

Understanding and Predicting Profile Structure and Parametric Scaling of Intrinsic Rotation

NASA Astrophysics Data System (ADS)

Wang, Weixing

2016-10-01

It is shown for the first time that turbulence-driven residual Reynolds stress can account for both the shape and magnitude of the observed intrinsic toroidal rotation profile. Nonlinear, global gyrokinetic simulations using GTS of DIII-D ECH plasmas indicate a substantial ITG fluctuation-induced non-diffusive momentum flux generated around a mid-radius-peaked intrinsic toroidal rotation profile. The non-diffusive momentum flux is dominated by the residual stress with a negligible contribution from the momentum pinch. The residual stress profile shows a robust anti-gradient, dipole structure in a set of ECH discharges with varying ECH power. Such interesting features of non-diffusive momentum fluxes, in connection with edge momentum sources and sinks, are found to be critical to drive the non-monotonic core rotation profiles in the experiments. Both turbulence intensity gradient and zonal flow ExB shear are identified as major contributors to the generation of the k∥-asymmetry needed for the residual stress generation. By balancing the residual stress and the momentum diffusion, a self-organized, steady-state rotation profile is calculated. The predicted core rotation profiles agree well with the experimentally measured main-ion toroidal rotation. The validated model is further used to investigate the characteristic dependence of global rotation profile structure in the multi-dimensional parametric space covering turbulence type, q-profile structure and collisionality with the goal of developing physics understanding needed for rotation profile control and optimization. Interesting results obtained include intrinsic rotation reversal induced by ITG-TEM transition in flat-q profile regime and by change in q-profile from weak to normal shear.. Fluctuation-generated poloidal Reynolds stress is also shown to significantly modify the neoclassical poloidal rotation in a way consistent with experimental observations. Finally, the first-principles-based model is applied to studying the ρ * -scaling and predicting rotations in ITER regime. Work supported by U.S. DOE Contract DE-AC02-09-CH11466.

Effect of magnetic shear on dissipative drift instabilities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guzdar, P.N.; Chen, L.; Kaw, P.K.

1978-03-01

In this letter we report the results of a linear radial eigenmode analysis of dissipative drift waves in a plasma with magnetic shear and spatially varying density gradient. The results of the analysis are shown to be consistent with a recent experiment on the study of dissipative drift instabilities in a toroidal stellarator.

Plasma Irregularities on the Leading and Trailing Edges of Polar Cap Patches

NASA Astrophysics Data System (ADS)

Lamarche, L. J.; Varney, R. H.; Gillies, R.; Chartier, A.; Mitchell, C. N.

2017-12-01

Plasma irregularities in the polar cap have often been attributed to the gradient drift instability (GDI). Traditional fluid theories of GDI predicts irregularity growth only on the trailing edge of polar patches, where the plasma density gradient is parallel to the plasma drift velocity, however many observations show irregularities also form on the leading edge of patches. We consider decameter-scale irregularities detected by polar-latitude SuperDARN (Super Dual Auroral Radar Network) radars with any relationship between the background density gradients and drift velocity. Global electron density from the Multi-Instrument Data Analysis System (MIDAS), a GPS tomography routine, is used to provide context for where irregularities are observed relative to polar patches and finer-scale background density gradients are found from 3D imaging from both the North and Canada faces of the Resolute Bay Incoherent Scatter Radars (RISR-N and RISR-C) jointly. Shear-based instabilities are considered as mechanisms by which plasma irregularities could form on the leading edge of patches. Theoretical predictions of instability growth from both GDI and shear instabilities are compared with irregularity observations for the October 13, 2016 storm.

Electron Profile Stiffness and Critical Gradient Length Studies in the Alcator C-Mod Tokamak

NASA Astrophysics Data System (ADS)

Houshmandyar, Saeid; Hatch, David R.; Liao, Kenneth T.; Zhao, Bingzhe; Phillips, Perry E.; Rowan, William L.; Cao, Norman; Ernst, Darin R.; Rice, John E.

2017-10-01

Electron temperature profile stiffness was investigated at Alcator C-Mod L-mode discharges. Electrons were heated by ion cyclotron range of frequencies (ICRF) through minority heating. The intent of the heating mechanism was to vary the heat flux and simultaneously, gradually change the local gradient. The electron temperature gradient scale length (LTe- 1 = | ∇Te |/Te) was accurately measured through a novel technique, using the high-resolution radiometer ECE diagnostic. The TRANSP power balance analysis (Q/QGB) and the measured scale length (a/LTe) result in critical scale length measurements at all major radius locations. These measurements suggest that the profiles are already at the critical values. Furthermore, the dependence of the stiffness on plasma rotation and magnetic shear will be discussed. In order to understand the underlying mechanism of turbulence for these discharges, simulations using the gyrokinetic code, GENE, were carried out. For linear runs at electron scales, it was found that the largest growth rates are very sensitive to a/LTe variation, which suggests the presence of ETG modes, while the sensitivity studies in the ion scales indicate ITG/TEM modes. Supported by USDoE awards DE-FG03-96ER54373 and DE-FC02-99ER54512.

Relative influences of the metocean forcings on the drifting ice pack and estimation of internal ice stress gradients in the Labrador Sea

NASA Astrophysics Data System (ADS)

Turnbull, I. D.; Torbati, R. Z.; Taylor, R. S.

2017-07-01

Understanding the relative influences of the metocean forcings on the drift of sea ice floes is a crucial component to the overall characterization of an ice environment and to developing an understanding of the factors controlling the ice dynamics. In addition, estimating the magnitude of the internal stress gradients on drifting sea ice floes generated by surrounding ice cover is important for modeling operations, informing the design of offshore structures and vessels in ice environments, and for the proper calibration of Discrete Element Models (DEM) of fields of drifting ice floes. In the spring of 2015 and 2016, four sea ice floes offshore Makkovik, Labrador were tagged with satellite-linked ice tracking buoys along with one satellite-linked weather station on each floe to transmit wind speed and direction. Twenty satellite-linked Lagrangian surface ocean current tracking buoys were also deployed in the open water adjacent to the targeted ice floes. In this paper, the dynamics of the four ice floes are explored in terms of the relative proportions which were forced by the wind, current, sea surface topography, Coriolis, and internal stress gradients. The internal ice stress gradients are calculated as residuals between the observed accelerations of the floes as measured by the tracking buoys and the sums of the other metocean forcings. Results show that internal ice stress gradients accounted for up to 50% of the observed forcing on the floes, and may have reached up to around 0.19 kPa.

Neuropsychology Outcomes Following Trephine Epilepsy Surgery: The Inferior Temporal Gyrus Approach for Amygdalohippocampectomy in Medically Refractory Mesial Temporal Lobe Epilepsy.

PubMed

Schoenberg, Mike R; Clifton, William E; Sever, Ryan W; Vale, Fernando L

2018-06-01

Surgery is indicated in cases of mesial temporal lobe epilepsy(MTLE) that are refractory to medical management. The inferior temporal gyrus (ITG) approach provides access to the mesial temporal lobe (MTL) structures with minimal tissue disruption. Reported neuropsychology outcomes following this approach are limited. To report neuropsychological outcomes using an ITG approach to amygdalohippocampectomy (AH) in patients with medically refractory MTLE based on a prospective design. Fifty-four participants had Engel class I/II outcome following resection of MTL using the ITG approach. All participants had localization-related epilepsy confirmed by long-term surface video-electroencephalography and completed pre/postsurgical evaluations that included magnetic resonance imaging (MRI), Wada test or functional MRI, and neuropsychology assessment. Clinical semiology/video-electroencephalography indicated that of the 54 patients, 28 (52%) had left MTLE and 26 (48%) had right MTLE. Dominant hemisphere resections were performed on 23 patients (43%), nondominant on 31(57%). Twenty-nine (29) had pathology-confirmed mesial temporal sclerosis (MTS). Group level analyses found declines in verbal memory for patients with language-dominant resections (P < .05). No significant decline in neuropsychological measures occurred for patients with MTS. Participants without MTS who underwent a language-dominant lobe resection exhibited a significant decline in verbal and visual memory (P < .05). Nondominant resection participants did not exhibit significant change in neuropsychology scores (P > .05). Neuropsychology outcomes of an ITG approach for selective mesial temporal resection are comparable to other selective AH techniques showing minimal adverse cognitive effects. These data lend support to the ITG approach for selective AH as an option for MTLE.

Improvements of the particle-in-cell code EUTERPE for petascaling machines

NASA Astrophysics Data System (ADS)

Sáez, Xavier; Soba, Alejandro; Sánchez, Edilberto; Kleiber, Ralf; Castejón, Francisco; Cela, José M.

2011-09-01

In the present work we report some performance measures and computational improvements recently carried out using the gyrokinetic code EUTERPE (Jost, 2000 [1] and Jost et al., 1999 [2]), which is based on the general particle-in-cell (PIC) method. The scalability of the code has been studied for up to sixty thousand processing elements and some steps towards a complete hybridization of the code were made. As a numerical example, non-linear simulations of Ion Temperature Gradient (ITG) instabilities have been carried out in screw-pinch geometry and the results are compared with earlier works. A parametric study of the influence of variables (step size of the time integrator, number of markers, grid size) on the quality of the simulation is presented.

Modelling of Dictyostelium discoideum movement in a linear gradient of chemoattractant.

PubMed

Eidi, Zahra; Mohammad-Rafiee, Farshid; Khorrami, Mohammad; Gholami, Azam

2017-11-15

Chemotaxis is a ubiquitous biological phenomenon in which cells detect a spatial gradient of chemoattractant, and then move towards the source. Here we present a position-dependent advection-diffusion model that quantitatively describes the statistical features of the chemotactic motion of the social amoeba Dictyostelium discoideum in a linear gradient of cAMP (cyclic adenosine monophosphate). We fit the model to experimental trajectories that are recorded in a microfluidic setup with stationary cAMP gradients and extract the diffusion and drift coefficients in the gradient direction. Our analysis shows that for the majority of gradients, both coefficients decrease over time and become negative as the cells crawl up the gradient. The extracted model parameters also show that besides the expected drift in the direction of the chemoattractant gradient, we observe a nonlinear dependency of the corresponding variance on time, which can be explained by the model. Furthermore, the results of the model show that the non-linear term in the mean squared displacement of the cell trajectories can dominate the linear term on large time scales.

Accurate prediction of retention in hydrophilic interaction chromatography by back calculation of high pressure liquid chromatography gradient profiles.

PubMed

Wang, Nu; Boswell, Paul G

2017-10-20

Gradient retention times are difficult to project from the underlying retention factor (k) vs. solvent composition (φ) relationships. A major reason for this difficulty is that gradients produced by HPLC pumps are imperfect - gradient delay, gradient dispersion, and solvent mis-proportioning are all difficult to account for in calculations. However, we recently showed that a gradient "back-calculation" methodology can measure these imperfections and take them into account. In RPLC, when the back-calculation methodology was used, error in projected gradient retention times is as low as could be expected based on repeatability in the k vs. φ relationships. HILIC, however, presents a new challenge: the selectivity of HILIC columns drift strongly over time. Retention is repeatable in short time, but selectivity frequently drifts over the course of weeks. In this study, we set out to understand if the issue of selectivity drift can be avoid by doing our experiments quickly, and if there any other factors that make it difficult to predict gradient retention times from isocratic k vs. φ relationships when gradient imperfections are taken into account with the back-calculation methodology. While in past reports, the accuracy of retention projections was >5%, the back-calculation methodology brought our error down to ∼1%. This result was 6-43 times more accurate than projections made using ideal gradients and 3-5 times more accurate than the same retention projections made using offset gradients (i.e., gradients that only took gradient delay into account). Still, the error remained higher in our HILIC projections than in RPLC. Based on the shape of the back-calculated gradients, we suspect the higher error is a result of prominent gradient distortion caused by strong, preferential water uptake from the mobile phase into the stationary phase during the gradient - a factor our model did not properly take into account. It appears that, at least with the stationary phase we used, column distortion is an important factor to take into account in retention projection in HILIC that is not usually important in RPLC. Copyright © 2017 Elsevier B.V. All rights reserved.

Suppression of Collisionless Magnetic Reconnection in Asymmetric Current Sheets

NASA Technical Reports Server (NTRS)

Liu, Yi-Hsin; Hesse, Michael

2016-01-01

Using fully kinetic simulations, we study the suppression of asymmetric reconnection in the limit where the diamagnetic drift speed >> Alfven speed and the magnetic shear angle is moderate. We demonstrate that the slippage between electrons and the magnetic flux mitigates the suppression and can even result in fast reconnection that lacks one of the outflow jets. Through comparing a case where the diamagnetic drift is supported by the temperature gradient with a companion case that has a density gradient instead, we identify a robust suppression mechanism. The drift of the x-line is slowed down locally by the asymmetric nature of the x-line, and then the x-line is run over and swallowed by the faster-moving following flux.

High-Beta Electromagnetic Turbulence in LAPD Plasmas

NASA Astrophysics Data System (ADS)

Rossi, G.; Carter, T. A.; Pueschel, M. J.; Jenko, F.; Told, D.; Terry, P. W.

2015-11-01

The introduction of a new LaB6 cathode plasma source in the Large Plasma Device has enabled the study of pressure-gradient-driven turbulence and transport variations at significantly higher plasma β. Density fluctuations are observed to decrease with increasing β while magnetic fluctuations increase. Furthermore, the perpendicular magnetic fluctuations are seen to saturate while parallel (compressional) magnetic fluctuations increase continuously with β. These observations are compared to linear and nonlinear simulations with the GENE code. The results are consistent with the linear excitation of a Gradient-driven Drift Coupling mode (GDC) which relies on grad-B drift due to parallel magnetic fluctuations and can be driven by density or temperature gradients.

Magnetic field shift due to mechanical vibration in functional magnetic resonance imaging.

PubMed

Foerster, Bernd U; Tomasi, Dardo; Caparelli, Elisabeth C

2005-11-01

Mechanical vibrations of the gradient coil system during readout in echo-planar imaging (EPI) can increase the temperature of the gradient system and alter the magnetic field distribution during functional magnetic resonance imaging (fMRI). This effect is enhanced by resonant modes of vibrations and results in apparent motion along the phase encoding direction in fMRI studies. The magnetic field drift was quantified during EPI by monitoring the resonance frequency interleaved with the EPI acquisition, and a novel method is proposed to correct the apparent motion. The knowledge on the frequency drift over time was used to correct the phase of the k-space EPI dataset. Since the resonance frequency changes very slowly over time, two measurements of the resonance frequency, immediately before and after the EPI acquisition, are sufficient to remove the field drift effects from fMRI time series. The frequency drift correction method was tested "in vivo" and compared to the standard image realignment method. The proposed method efficiently corrects spurious motion due to magnetic field drifts during fMRI. (c) 2005 Wiley-Liss, Inc.

Density-Gradient-Driven trapped-electron-modes in improved-confinement RFP plasmas

NASA Astrophysics Data System (ADS)

Duff, James

2016-10-01

Short wavelength density fluctuations in improved-confinement MST plasmas exhibit multiple features characteristic of the trapped-electron-mode (TEM), strong evidence that drift wave turbulence emerges in RFP plasmas when transport associated with MHD tearing is reduced. Core transport in the RFP is normally governed by magnetic stochasticity stemming from long wavelength tearing modes that arise from current profile peaking. Using inductive control, the tearing modes are reduced and global confinement is increased to values expected for a comparable tokamak plasma. The improved confinement is associated with a large increase in the pressure gradient that can destabilize drift waves. The measured density fluctuations have frequencies >50 kHz, wavenumbers k_phi*rho_s<0.14, and propagate in the electron drift direction. Their spectral emergence coincides with a sharp decrease in fluctuations associated with global tearing modes. Their amplitude increases with the local density gradient, and they exhibit a density-gradient threshold at R/L_n 15, higher than in tokamak plasmas by R/a. the GENE code, modified for RFP equilibria, predicts the onset of microinstability for these strong-gradient plasma conditions. The density-gradient-driven TEM is the dominant instability in the region where the measured density fluctuations are largest, and the experimental threshold-gradient is close to the predicted critical gradient for linear stability. While nonlinear analysis shows a large Dimits shift associated with predicted strong zonal flows, the inclusion of residual magnetic fluctuations causes a collapse of the zonal flows and an increase in the predicted transport to a level close to the experimentally measured heat flux. Similar circumstances could occur in the edge region of tokamak plasmas when resonant magnetic perturbations are applied for the control of ELMs. Work supported by US DOE.

Distinguishing the Biomass Allocation Variance Resulting from Ontogenetic Drift or Acclimation to Soil Texture

PubMed Central

Xie, Jiangbo; Tang, Lisong; Wang, Zhongyuan; Xu, Guiqing; Li, Yan

2012-01-01

In resource-poor environments, adjustment in plant biomass allocation implies a complex interplay between environmental signals and plant development rather than a delay in plant development alone. To understand how environmental factors influence biomass allocation or the developing phenotype, it is necessary to distinguish the biomass allocations resulting from environmental gradients or ontogenetic drift. Here, we compared the development trajectories of cotton plants (Gossypium herbaceum L.), which were grown in two contrasting soil textures during a 60-d period. Those results distinguished the biomass allocation pattern resulting from ontogenetic drift and the response to soil texture. The soil texture significantly changed the biomass allocation to leaves and roots, but not to stems. Soil texture also significantly changed the development trajectories of leaf and root traits, but did not change the scaling relationship between basal stem diameter and plant height. Results of nested ANOVAs of consecutive plant-size categories in both soil textures showed that soil gradients explained an average of 63.64–70.49% of the variation of biomass allocation to leaves and roots. Ontogenetic drift explained 77.47% of the variation in biomass allocation to stems. The results suggested that the environmental factors governed the biomass allocation to roots and leaves, and ontogenetic drift governed the biomass allocation to stems. The results demonstrated that biomass allocation to metabolically active organs (e.g., roots and leaves) was mainly governed by environmental factors, and that biomass allocation to metabolically non-active organs (e.g., stems) was mainly governed by ontogenetic drift. We concluded that differentiating the causes of development trajectories of plant traits was important to the understanding of plant response to environmental gradients. PMID:22911802

High frequency drift instabilities in a dusty plasma

NASA Technical Reports Server (NTRS)

Rosenberg, M.; Krall, N. A.

1994-01-01

High frequency drift instabilities with omega(sub ce) much greater than omega which is greater than omega(sub ci) are investigated in a dusty magnetized plasma in which locally there is an electron density gradient which is opposite in sign to a dust density gradient. Two different equilibria are considered, characterized by rho(sub d) greater than L(sub d) and less than L(sub d), where rho(sub d) is the dust gyroradius and L(sub nd) is the dust density scale length. Possible application to Saturn's F-ring is discussed.

A Diffusion Approximation Based on Renewal Processes with Applications to Strongly Biased Run-Tumble Motion.

PubMed

Thygesen, Uffe Høgsbro

2016-03-01

We consider organisms which use a renewal strategy such as run-tumble when moving in space, for example to perform chemotaxis in chemical gradients. We derive a diffusion approximation for the motion, applying a central limit theorem due to Anscombe for renewal-reward processes; this theorem has not previously been applied in this context. Our results extend previous work, which has established the mean drift but not the diffusivity. For a classical model of tumble rates applied to chemotaxis, we find that the resulting chemotactic drift saturates to the swimming velocity of the organism when the chemical gradients grow increasingly steep. The dispersal becomes anisotropic in steep gradients, with larger dispersal across the gradient than along the gradient. In contrast to one-dimensional settings, strong bias increases dispersal. We next include Brownian rotation in the model and find that, in limit of high chemotactic sensitivity, the chemotactic drift is 64% of the swimming velocity, independent of the magnitude of the Brownian rotation. We finally derive characteristic timescales of the motion that can be used to assess whether the diffusion limit is justified in a given situation. The proposed technique for obtaining diffusion approximations is conceptually and computationally simple, and applicable also when statistics of the motion is obtained empirically or through Monte Carlo simulation of the motion.

Longitudinal waves in a perpendicular collisionless plasma shock. IV - Gradient B.

NASA Technical Reports Server (NTRS)

Gary, S. P.

1972-01-01

The consideration of elastic waves in a Vlasov plasma of unmagnetized ions and magnetized electrons undergoing E x B electron drift and gradient B drift, pursued in the earlier three parts, is brought to conclusion in this last part of the longitudinal wave study in a collisionless plasma shock. Detailed calculations of the effects of the beta sub e dimensionless parameter on the E x B electron drift instability are presented. It is shown that the range of propagation of the elastic waves about the perpendicular remains quite narrow, and that, for oblique propagation, the already narrow angular range of unstable waves is decreased by increases in the value of the beta sub e dimensionless parameter. Also, increases in wave number generally reduce the growth rate and the angular range of propagation.

Particle drift model for Z-pinch-driven magneto-Rayleigh-Taylor instability

NASA Astrophysics Data System (ADS)

Dan, Jia Kun; Xu, Qiang; Wang, Kun Lun; Ren, Xiao Dong; Huang, Xian Bin

2016-09-01

A theoretical model of Z-pinch driven magneto-Rayleigh-Taylor instability is proposed based on the particle drift point of view, which can explain the helical instability structure observed in premagnetized imploding liner experiments. It is demonstrated that all possible drift motions, including polarization drift, gradient drift, and curvature drift, which can lead to charge separations, each will attribute to an effective gravity acceleration. Theoretical predictions given by this model are dramatically different from those given by previous theories which have been readily recovered in the theory presented here as a limiting case. The theory shows qualitative agreement with available experimental data of the pitch angle and provides certain predictions to be verified.

Global Surrogates for the Upshift of the Critical Threshold in the Gradient for ITG Driven Turbulence

NASA Astrophysics Data System (ADS)

Michoski, Craig; Janhunen, Salomon; Faghihi, Danial; Carey, Varis; Moser, Robert

2017-10-01

The suppression of micro-turbulence and ultimately the inhibition of large-scale instabilities observed in tokamak plasmas is partially characterized by the onset of a global stationary state. This stationary attractor corresponds experimentally to a state of ``marginal stability'' in the plasma. The critical threshold that characterizes the onset in the nonlinear regime is observed both experimentally and numerically to exhibit an upshift relative to the linear theory. That is, the onset in the stationary state is up-shifted from those predicted by the linear theory as a function of the ion temperature gradient R0 /LT . Because the transition to this state with enhanced transport and therefore reduced confinement times is inaccessible to the linear theory, strategies for developing nonlinear reduced physics models to predict the upshift have been ongoing. As a complement to these effort, the principle aim of this work is to establish low-fidelity surrogate models that can be used to predict instability driven loss of confinement using training data from high-fidelity models. DE-SC0008454 and DE-AC02-09CH11466.

Validation of theoretical models of intrinsic torque in DIII-D

NASA Astrophysics Data System (ADS)

Grierson, B. A.; Wang, W. X.; Battaglia, D. J.; Chrystal, C.; Solomon, W. M.; Degrassie, J. S.; Staebler, G. M.; Boedo, J. A.

2016-10-01

Plasma rotation experiments in DIII-D are validating models of main-ion intrinsic rotation by testing Reynolds stress induced toroidal flow in the plasma core and intrinsic rotation induced by ion orbit losses in the plasma edge. In the core of dominantly electron heated plasmas with Te=Ti, the main-ion intrinsic toroidal rotation undergoes a reversal that correlates with the critical gradient for ITG turbulence. Residual stress arising from zonal-flow ExB shear and turbulence intensity gradient produce residual stress and counter-current intrinsic torque, which is balanced by momentum diffusion, creating the hollow profile. Quantitative agreement is obtained for the first time between the measured main-ion toroidal rotation and the rotation profile predicted by nonlinear GTS gyrokinetic simulations. At the plasma boundary, new main-ion CER measurements show a co-current rotation layer and this is tested against ion orbit loss models as the source of bulk plasma rotation. Work supported by the US Department of Energy under DE-AC02-09CH11466 and DE-FC02-04ER54698.

The Electron Drift Instrument for Cluster

NASA Technical Reports Server (NTRS)

Paschmann, G.; Melzner, F.; Frenzel, R.; Vaith, H.; Parigger, P.; Pagel, U.; Bauer, O. H.; Haerendel, G.; Baumjohann, W.; Scopke, N.

1997-01-01

The Electron Drift Instrument (EDI) measures the drift of a weak beam of test electrons that, when emitted in certain directions, return to the spacecraft after one or more gyrations. This drift is related to the electric field and the gradient in the magnetic field, and these quantities can, by use of different electron energies, be determined separately. As a by-product, the magnetic field strength is also measured. The present paper describes the scientific objectives, the experimental method, and the technical realization of the various elements of the instrument.

Drift Wave Chaos and Turbulence in a LAPTAG Plasma Physics experiment

NASA Astrophysics Data System (ADS)

Katz, Cami; Gekelman, Walter; Pribyl, Patrick; Wise, Joe; Birge-Lee, Henry; Baker, Bob; Marmie, Ken; Thomas, Sam; Buckley-Bonnano, Samuel

2015-11-01

Whenever there is a pressure gradient in a magnetized plasma drift waves occur spontaneously. Drift waves have density and electrical potential fluctuations but no self magnetic field. In our experiment the drift waves form spontaneously in a narrow plasma column. (ne = 5 ×1011 cm3 , Te = 5 eV , B = 200 Gauss, dia = 25 cm , L = 1 . 5 m). As the drift waves grow from noise simple averaging techniques cannot be used to map them out in space and time. The ion saturation current Isat n√{Te} is recorded for an ensemble of 50 shots on a fixed probe located on the density gradient and for a movable probe. The probe signals are not sinusoidal and are filtered to calculate the cross-spectral function CSF = ∫ ∑ nshot Ifix, ωr->1 , tImov , ω (r->1 + δr-> , t + τ) dt , which can be used to extract the temporal and spatially varying wave patterns. The dominant wave at 18 kHz is a rotating spiral with m =2. LAPTAG is a university-high school alliance outreach program, which has been in existence for over 20 years. Work done at the BaPSF and supported by NSF/DOE.

Evidence of a New Instability in Gyrokinetic Simulations of LAPD Plasmas

NASA Astrophysics Data System (ADS)

Terry, P. W.; Pueschel, M. J.; Rossi, G.; Jenko, F.; Told, D.; Carter, T. A.

2015-11-01

Recent experiments at the LArge Plasma Device (LAPD) have focused on structure formation driven by density and temperature gradients. A central difference relative to typical, tokamak-like plasmas stems from the linear geometry and absence of background magnetic shear. At sufficiently high β, strong excitation of parallel (compressional) magnetic fluctuations was observed. Here, linear and nonlinear simulations with the Gene code are used to demonstrate that these findings can be explained through the linear excitation of a Gradient-driven Drift Coupling mode (GDC). This recently-discovered instability, unlike other drift waves, relies on the grad-B drift due to parallel magnetic fluctuations in lieu of a parallel electron response, and can be driven by density or temperature gradients. The linear properties of the GDC for LAPD parameters are studied in detail, and the corresponding turbulence is investigated. It is found that, despite the very large collisionality in the experiment, many properties are recovered fairly well in the simulations. In addition to confirming the existence of the GDC, this opens up interesting questions regarding GDC activity in astrophysical and space plasmas. Supported by USDOE.

Production of internal transport barriers via self-generated mean flows in Alcator C-Moda)

NASA Astrophysics Data System (ADS)

Fiore, C. L.; Ernst, D. R.; Podpaly, Y. A.; Mikkelsen, D.; Howard, N. T.; Lee, Jungpyo; Reinke, M. L.; Rice, J. E.; Hughes, J. W.; Ma, Y.; Rowan, W. L.; Bespamyatnov, I.

2012-05-01

New results suggest that changes observed in the intrinsic toroidal rotation influence the internal transport barrier (ITB) formation in the Alcator C-Mod tokamak [E. S. Marmar and Alcator C-Mod group, Fusion Sci. Technol. 51, 261 (2007)]. These arise when the resonance for ion cyclotron range of frequencies (ICRF) minority heating is positioned off-axis at or outside of the plasma half-radius. These ITBs form in a reactor relevant regime, without particle or momentum injection, with Ti ≈ Te, and with monotonic q profiles (qmin < 1). C-Mod H-mode plasmas exhibit strong intrinsic co-current rotation that increases with increasing stored energy without external drive. When the resonance position is moved off-axis, the rotation decreases in the center of the plasma resulting in a radial toroidal rotation profile with a central well which deepens and moves farther off-axis when the ICRF resonance location reaches the plasma half-radius. This profile results in strong E × B shear (>1.5 × 105 rad/s) in the region where the ITB foot is observed. Gyrokinetic analyses indicate that this spontaneous shearing rate is comparable to the linear ion temperature gradient (ITG) growth rate at the ITB location and is sufficient to reduce the turbulent particle and energy transport. New and detailed measurement of the ion temperature demonstrates that the radial profile flattens as the ICRF resonance position moves off axis, decreasing the drive for the ITG the instability as well. These results are the first evidence that intrinsic rotation can affect confinement in ITB plasmas.

Non-linear isotope and fast ions effects: routes for low turbulence in DT plasmas

NASA Astrophysics Data System (ADS)

Garcia, Jeronimo

2017-10-01

The isotope effect, i.e. the fact that heat and particle fluxes do not follow the expected Gyro-Bohm estimate for turbulent transport when the plasma mass is changed, is one of the main challenges in plasma theory. Of particular interest is the isotope exchange between the fusion of deuterium (DD) and deuterium-tritium (DT) nuclei as there are no clear indications of what kind of transport difference can be expected in burning plasmas. The GENE code is therefore used for computing DD vs DT linear and nonlinear microturbulence characteristics in the core plasma region of a previously ITER hybrid scenario at high beta obtained in the framework of simplified integrated modelling. Scans on common turbulence related quantitates as external ExB flow shear, Parallel Velocity Gradient (PVG), plasma beta, colisionality or the number of ion species have been performed. Additionally, the role of energetic particles, known to reduce Ion Temperature Gradient (ITG) turbulence has been also addressed. It is obtained that the ITER operational point will be close to threshold and in these conditions turbulence is dominated by ITG modes. A purely weak non-linear isotope effect, absent in linear scans, can be found when separately adding moderate ExB flow shear or electromagnetic effects, whereas collisionality just modulates the intensity. The isotope effect, on the other hand, becomes very strong in conditions with simultaneously moderate ExB flow shear, beta and low q profile with significant reductions of ion heat transport from DD to DT. By analyzing the radial structure of the two point electrostatic potential correlation function it has been found that the inherent Gyro-Bohm scaling for plasma microturbulence, which increases the radial correlation length at short scales form DD to DT, is counteracted by the concomitant appearance of a complex nonlinear multiscale space interaction involving external ExB flow shear, zonal flow activity, magnetic geometry and electromagnetic effects. The number of ion species and the fast ion population is also found to play a role in this non-linear process whereas a symmetry breaking between D and T, with systematic reduced heat and particle transport for T, is always obtained.

Stability of drift-cyclotron loss-cone waves in H-mode plasmas

DOE PAGES

Farmer, W. A.; Morales, G. J.

2016-05-24

The drift-cyclotron loss-cone mode was first studied in mirror machines. In such devices, particles with small pitch angles are not confined, creating a hole in the velocity distribution function that is a source of free energy and leads to micro-instabilities in the cyclotron-range of frequencies. In the edge region of tokamak devices operating under H-mode conditions, ion loss also occurs. In this case, gradient drift carries ions moving opposite to the plasma current preferentially into the divertor, creating a one-sided loss cone. A simple analysis shows that for the quiescent H-mode plasmas in DIII-D the critical gradient for instability ismore » exceeded within 2 cm of the separatrix, and the maximum growth rate at the separatrix is 3×10 7 s -1.« less

Lagrangian particle drift and surface deformation in a rotating wave on a free liquid surface

NASA Astrophysics Data System (ADS)

Fontana, Paul W.; Francois, Nicolas; Xia, Hua; Punzmann, Horst; Shats, Michael

2017-11-01

A nonlinear model of a rotating wave on the free surface of a liquid is presented. The flow is assumed to be inviscid and irrotational. The wave is constructed as a superposition of two perpendicular, monochromatic standing Stokes waves and is standing-wave-like, but with ``antinodes'' or cells consisting of rotating surface gradients of alternating polarity. Lagrangian fluid particle trajectories show a rotational drift about each cell in the direction of wave rotation, corresponding to a rotating Stokes drift. Each cell therefore has a circulating flow and localized angular momentum even though the Eulerian flow is irrotational. Meanwhile, the wave sets up a static displacement of the free surface, making a trough in each cell. This static surface gradient provides a centripetal force that may account for additional rotation seen in experiments.

Hydrodynamic Model for Density Gradients Instability in Hall Plasmas Thrusters

NASA Astrophysics Data System (ADS)

Singh, Sukhmander

2017-10-01

There is an increasing interest for a correct understanding of purely growing electromagnetic and electrostatic instabilities driven by a plasma gradient in a Hall thruster devices. In Hall thrusters, which are typically operated with xenon, the thrust is provided by the acceleration of ions in the plasma generated in a discharge chamber. The goal of this paper is to study the instabilities due to gradients of plasma density and conditions for the growth rate and real part of the frequency for Hall thruster plasmas. Inhomogeneous plasmas prone a wide class of eigen modes induced by inhomogeneities of plasma density and called drift waves and instabilities. The growth rate of the instability has a dependences on the magnetic field, plasma density, ion temperature and wave numbers and initial drift velocities of the plasma species.

The Major Role of IK1 in Mechanisms of Rotor Drift in the Atria: A Computational Study

PubMed Central

Berenfeld, Omer

2016-01-01

Maintenance of paroxysmal atrial fibrillation (AF) by fast rotors in the left atrium (LA) or at the pulmonary veins (PVs) is not fully understood. This review describes the role of the heterogeneous distribution of transmembrane currents in the PVs and LA junction (PV-LAJ) in the localization of rotors in the PVs. Experimentally observed heterogeneities in IK1, IKs, IKr, Ito, and ICaL in the PV-LAJ were incorporated into models of human atrial kinetics to simulate various conditions and investigate rotor drifting mechanisms. Spatial gradients in the currents resulted in shorter action potential duration, less negative minimum diastolic potential, slower upstroke and conduction velocity for rotors in the PV region than in the LA. Rotors under such conditions drifted toward the PV and stabilized at the less excitable region. Our simulations suggest that IK1 heterogeneity is dominant in determining the drift direction through its impact on the excitability gradient. These results provide a novel framework for understanding the complex dynamics of rotors in AF. PMID:28096699

Adiabatic theory in regions of strong field gradients. [in magnetosphere

NASA Technical Reports Server (NTRS)

Whipple, E. C.; Northrop, T. G.; Birmingham, T. J.

1986-01-01

The theory for the generalized first invariant for adiabatic motion of charged particles in regions where there are large gradients in magnetic or electric fields is developed. The general condition for an invariant to exist in such regions is that the potential well in which the particle oscillates change its shape slowly as the particle drifts. It is shown how the Kruskal (1962) procedure can be applied to obtain expressions for the invariant and for drift velocities that are asymptotic in a smallness parameter epsilon. The procedure is illustrated by obtaining the invariant and drift velocities for particles traversing a perpendicular shock, and the generalized invariant is compared with the magnetic moment, and the drift orbits with the actual orbits, for a particular case. In contrast to the magnetic moment, the generalized first invariant is better for large gyroradii (large kinetic energies) than for small gyroradii. Expressions for the invariant when an electrostatic potential jump is imposed across the perpendicular shock, and when the particle traverses a rotational shear layer with a small normal component of the magnetic field are given.

Ohmic ITBs in Alcator C-Mod

NASA Astrophysics Data System (ADS)

Rowan, William L.; Bespamyatnov, Igor O.; Fiore, C. L.; Dominguez, A.; Hubbard, A. E.; Ince-Cushman, A.; Greenwald, M. J.; Lin, L.; Marmar, E. S.; Reinke, M.; Rice, J. E.; Zhurovich, K.

2007-11-01

Internal transport barrier (ITB) plasmas can arise spontaneously in Ohmic Alcator C-Mod plasmas. The operational prescription for the ITB include formation of an EDA H-mode in a toroidal magnetic field that is ramping down and a subsequent increase in the toroidal magnetic field. Like ITBs generated with off-axis ICRF heating, these have peaked pressure profiles which can be suppressed by on-axis ICRF heating. Recent work on onset conditions for the ICRF generated ITB (K. Zhurovich, et al., To be published in Nuclear Fusion) demonstrates that the broadening of the ion temperature profile due to off-axis ICRF reduces the ion temperature gradient and suppreses the ITG instability driven particle flux as the primary mechanism for ITB formation. The object of this study is to examine the characteristics of Ohmic ITBs to find whether this model for onset is supported.

Density-Gradient-Driven trapped-electron-modes in improved-confinement RFP plasmas

NASA Astrophysics Data System (ADS)

Duff, James; Sarff, John; Ding, Weixing; Brower, David; Parke, Eli; Chapman, Brett; Terry, Paul; Pueschel, M. J.; Williams, Zach

2017-10-01

Short wavelength density fluctuations in improved-confinement MST plasmas exhibit multiple features characteristic of the trapped-electron-mode (TEM). Core transport in the RFP is normally governed by magnetic stochasticity stemming from long wavelength tearing modes that arise from current profile peaking, which are suppressed via inductive control for this work. The improved confinement is associated with an increase in the pressure gradient that can destabilize drift waves. The measured density fluctuations have f 50 kHz, kϕρs < 0.14 , and propagate in the electron drift direction. Their spectral emergence coincides with a sharp decrease in global tearing mode associated fluctuations, their amplitude increases with local density gradient, and they exhibit a density-gradient threshold at R /Ln 15 . The GENE code, modified for the RFP, predicts the onset of density-gradient-driven TEM for these strong-gradient plasma conditions. While nonlinear analysis shows a large Dimits shift associated with predicted strong zonal flows, the inclusion of residual magnetic fluctuations, comparable to experimental magnetic fluctuations, causes a collapse of the zonal flows and an increase in the predicted transport to a level close to the experimentally measured heat flux. Work supported by US DOE.

Drift, selection, or migration? Processes affecting genetic differentiation and variation along a latitudinal gradient in an amphibian.

PubMed

Cortázar-Chinarro, Maria; Lattenkamp, Ella Z; Meyer-Lucht, Yvonne; Luquet, Emilien; Laurila, Anssi; Höglund, Jacob

2017-08-14

Past events like fluctuations in population size and post-glacial colonization processes may influence the relative importance of genetic drift, migration and selection when determining the present day patterns of genetic variation. We disentangle how drift, selection and migration shape neutral and adaptive genetic variation in 12 moor frog populations along a 1700 km latitudinal gradient. We studied genetic differentiation and variation at a MHC exon II locus and a set of 18 microsatellites. Using outlier analyses, we identified the MHC II exon 2 (corresponding to the β-2 domain) locus and one microsatellite locus (RCO8640) to be subject to diversifying selection, while five microsatellite loci showed signals of stabilizing selection among populations. STRUCTURE and DAPC analyses on the neutral microsatellites assigned populations to a northern and a southern cluster, reflecting two different post-glacial colonization routes found in previous studies. Genetic variation overall was lower in the northern cluster. The signature of selection on MHC exon II was weaker in the northern cluster, possibly as a consequence of smaller and more fragmented populations. Our results show that historical demographic processes combined with selection and drift have led to a complex pattern of differentiation along the gradient where some loci are more divergent among populations than predicted from drift expectations due to diversifying selection, while other loci are more uniform among populations due to stabilizing selection. Importantly, both overall and MHC genetic variation are lower at northern latitudes. Due to lower evolutionary potential, the low genetic variation in northern populations may increase the risk of extinction when confronted with emerging pathogens and climate change.

Two-fluid equilibrium transition during multi-pulsing CHI in spherical torus

NASA Astrophysics Data System (ADS)

Kanki, T.; Nagata, M.

2015-11-01

Two-fluid dynamo current drive has been studied to achieve a quasi-steady sustainment and good confinement of spherical torus (ST) plasmas by multi-pulsing CHI (M-CHI) in the HIST device. The density gradient, poloidal flow shear, and radial electric shear enhanced by applying the second CHI pulse is observed around the separatrix in the high field side to cause not only the ExB drift but also the ion diamagnetic drift, leading the two-fluid dynamo. The two-fluid equilibrium transition during the M-CHI in the ST is investigated by modelling the M-CHI in the two-fluid equilibrium calculations. The toroidal magnetic field becomes from a diamagnetic to a paramagnetic profile in the closed flux region due to the increase of the poloidal electron flow velocity in the central open flux column (OFC) region, while the diamagnetic profile is kept in the OFC region. The toroidal ion flow velocity is increased from negative to positive values in the closed flux region due to the increase in the drift velocity and the Hall effect. As the ion diamagnetic drift velocity is changed in the same direction as the ExB drift velocity around the separatrix in the high field side through the negative ion pressure gradient there, the poloidal ion flow velocity is increased in the OFC region, enhancing the flow shear. The radial electric field shear around the separatrix is enhanced due to the strong dependence on the magnetic force through the interaction of toroidal ion flow velocity and axial magnetic field. The density is decreased in the closed flux region according to the generalized Bernoulli law and its negative gradient around the separatrix steepens.

Modern spandrels: the roles of genetic drift, gene flow and natural selection in the evolution of parallel clines.

PubMed

Santangelo, James S; Johnson, Marc T J; Ness, Rob W

2018-05-16

Urban environments offer the opportunity to study the role of adaptive and non-adaptive evolutionary processes on an unprecedented scale. While the presence of parallel clines in heritable phenotypic traits is often considered strong evidence for the role of natural selection, non-adaptive evolutionary processes can also generate clines, and this may be more likely when traits have a non-additive genetic basis due to epistasis. In this paper, we use spatially explicit simulations modelled according to the cyanogenesis (hydrogen cyanide, HCN) polymorphism in white clover ( Trifolium repens ) to examine the formation of phenotypic clines along urbanization gradients under varying levels of drift, gene flow and selection. HCN results from an epistatic interaction between two Mendelian-inherited loci. Our results demonstrate that the genetic architecture of this trait makes natural populations susceptible to decreases in HCN frequencies via drift. Gradients in the strength of drift across a landscape resulted in phenotypic clines with lower frequencies of HCN in strongly drifting populations, giving the misleading appearance of deterministic adaptive changes in the phenotype. Studies of heritable phenotypic change in urban populations should generate null models of phenotypic evolution based on the genetic architecture underlying focal traits prior to invoking selection's role in generating adaptive differentiation. © 2018 The Author(s).

The Electron Drift Technique for Measuring Electric and Magnetic Fields

NASA Technical Reports Server (NTRS)

Paschmann, G.; McIlwain, C. E.; Quinn, J. M.; Torbert, R. B.; Whipple, E. C.; Christensen, John (Technical Monitor)

1998-01-01

The electron drift technique is based on sensing the drift of a weak beam of test electrons that is caused by electric fields and/or gradients in the magnetic field. These quantities can, by use of different electron energies, in principle be determined separately. Depending on the ratio of drift speed to magnetic field strength, the drift velocity can be determined either from the two emission directions that cause the electrons to gyrate back to detectors placed some distance from the emitting guns, or from measurements of the time of flight of the electrons. As a by-product of the time-of-flight measurements, the magnetic field strength is also determined. The paper describes strengths and weaknesses of the method as well as technical constraints.

Observation and analysis of pellet material del B drift on MAST

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garzotti, L.; Baylor, Larry R; Kochi, F.

2010-01-01

Pellet material deposited in a tokamak plasma experiences a drift towards the low field side of the torus induced by the magnetic field gradient. Plasma fuelling in ITER relies on the beneficial effect of this drift to increase the pellet deposition depth and fuelling efficiency. It is therefore important to analyse this phenomenon in present machines to improve the understanding of the del B induced drift and the accuracy of the predictions for ITER. This paper presents a detailed analysis of pellet material drift in MAST pellet injection experiments based on the unique diagnostic capabilities available on this machine andmore » compares the observations with predictions of state-of-the-art ablation and deposition codes.« less

The Development of Drift Wave Turbulence in Magnetic Reconnection

NASA Astrophysics Data System (ADS)

McMurtrie, L.; Drake, J. F.; Swisdak, M. M.

2013-12-01

An important feature in collisionless magnetic reconnection is the development of sharp discontinuities along the separatrices bounding the Alfvenic outflow. The typical scale length of these features is ρs (the Larmor radius based on the sound speed) for guide field reconnection. Temperature gradients in the inflowing plasma (as might be found in the magnetopause) can lead to instabilities at these separatrices, specifically drift wave turbulence. We present standalone 2D and 3D PIC simulations of drift wave turbulence to investigate scaling properties and growth rates. Further investigations of the relative importance of drift wave turbulence in the development of reconnection will also be considered.

On the Nocturnal Downward and Westward Equatorial Ionospheric Plasma Drifts During the 17 March 2015 Geomagnetic Storm

NASA Astrophysics Data System (ADS)

Bagiya, Mala S.; Vichare, Geeta; Sinha, A. K.; Sripathi, S.

2018-02-01

During quiet period, the nocturnal equatorial ionospheric plasma drifts eastward in the zonal direction and downward in the vertical direction. This quiet time drift pattern could be understood through dynamo processes in the nighttime equatorial ionosphere. The present case study reports the nocturnal simultaneous occurrence of the vertically downward and zonally westward plasma drifts over the Indian latitudes during the geomagnetic storm of 17 March 2015. After 17:00 UT ( 22:10 local time), the vertical plasma drift became downward and coincided with the westward zonal drift, a rarely observed feature of low latitude plasma drifts. The vertical drift turned upward after 18:00 UT, while the zonal drift became eastward. We mainly emphasize here the distinct bipolar type variations of vertical and zonal plasma drifts observed around 18:00 UT. We explain the vertical plasma drift in terms of the competing effects between the storm time prompt penetration and disturbance dynamo electric fields. Whereas, the westward drift is attributed to the storm time local electrodynamical changes mainly through the disturbance dynamo field in addition to the vertical Pedersen current arising from the spatial (longitudinal) gradient of the field aligned Pedersen conductivity.

Comparing simulation of plasma turbulence with experiment. II. Gyrokinetic simulations

NASA Astrophysics Data System (ADS)

Ross, David W.; Dorland, William

2002-12-01

The direct quantitative correspondence between theoretical predictions and the measured plasma fluctuations and transport is tested by performing nonlinear gyrokinetic simulations with the GS2 code. This is a continuation of previous work with gyrofluid simulations [D. W. Ross et al., Phys. Plasmas 9, 177 (2002)], and the same L-mode reference discharge in the DIII-D tokamak [J. L. Luxon and L. G. Davis, Fusion Technol. 8, 441 (1985)] is studied. The simulated turbulence is dominated by ion temperature gradient (ITG) modes, corrected by trapped-electron, passing-electron and impurity effects. The energy fluxes obtained in the gyrokinetic simulations are comparable to, even somewhat higher than, those of the earlier work, and the simulated ion thermal transport, corrected for E×B flow shear, exceeds the experimental value by more than a factor of 2. The simulation also overestimates the density fluctuation level. Varying the local temperature gradient shows a stiff response in the flux and an apparent up-shift from the linear mode threshold [A. M. Dimits et al., Phys. Plasmas 7, 969 (2000)]. This effect is insufficient, within the estimated error, to bring the results into conformity with the experiment.

Nonisothermal Brownian motion: Thermophoresis as the macroscopic manifestation of thermally biased molecular motion.

PubMed

Brenner, Howard

2005-12-01

A quiescent single-component gravity-free gas subject to a small steady uniform temperature gradient T, despite being at rest, is shown to experience a drift velocity UD=-D* gradient ln T, where D* is the gas's nonisothermal self-diffusion coefficient. D* is identified as being the gas's thermometric diffusivity alpha. The latter differs from the gas's isothermal isotopic self-diffusion coefficient D, albeit only slightly. Two independent derivations are given of this drift velocity formula, one kinematical and the other dynamical, both derivations being strictly macroscopic in nature. Within modest experimental and theoretical uncertainties, this virtual drift velocity UD=-alpha gradient ln T is shown to be constitutively and phenomenologically indistinguishable from the well-known experimental and theoretical formulas for the thermophoretic velocity U of a macroscopic (i.e., non-Brownian) non-heat-conducting particle moving under the influence of a uniform temperature gradient through an otherwise quiescent single-component rarefied gas continuum at small Knudsen numbers. Coupled with the size independence of the particle's thermophoretic velocity, the empirically observed equality, U=UD, leads naturally to the hypothesis that these two velocities, the former real and the latter virtual, are, in fact, simply manifestations of the same underlying molecular phenomenon, namely the gas's Brownian movement, albeit biased by the temperature gradient. This purely hydrodynamic continuum-mechanical equality is confirmed by theoretical calculations effected at the kinetic-molecular level on the basis of an existing solution of the Boltzmann equation for a quasi-Lorentzian gas, modulo small uncertainties pertaining to the choice of collision model. Explicitly, this asymptotically valid molecular model allows the virtual drift velocity UD of the light gas and the thermophoretic velocity U of the massive, effectively non-Brownian, particle, now regarded as the tracer particle of the light gas's drift velocity, to each be identified with the Chapman-Enskog "thermal diffusion velocity" of the quasi-Lorentzian gas, here designated by the symbol UM/M, as calculated by de la Mora and Mercer. It is further pointed out that, modulo the collective uncertainties cited above, the common velocities UD,U, and UM/M are identical to the single-component gas's diffuse volume current jv, the latter representing yet another, independent, strictly continuum-mechanical concept. Finally, comments are offered on the extension of the single-component drift velocity notion to liquids, and its application towards rationalizing Soret thermal-diffusion separation phenomena in quasi-Lorentzian liquid-phase binary mixtures composed of disparately sized solute and solvent molecules, with the massive Brownian solute molecules (e.g., colloidal particles) present in disproportionately small amounts relative to that of the solvent.

Effect of entropy on anomalous transport in ITG-modes of magneto-plasma

NASA Astrophysics Data System (ADS)

Yaqub Khan, M.; Qaiser Manzoor, M.; Haq, A. ul; Iqbal, J.

2017-04-01

The ideal gas equation and S={{c}v}log ≤ft(P/ρ \\right) (where S is entropy, P is pressure and ρ is the mass density) define the interconnection of entropy with the temperature and density of plasma. Therefore, different phenomena relating to plasma and entropy need to be investigated. By employing the Braginskii transport equations for a nonuniform electron-ion magnetoplasma, two new parameters—the entropy distribution function and the entropy gradient drift—are defined, a new dispersion relation is obtained, and the dependence of anomalous transport on entropy is also proved. Some results, like monotonicity, the entropy principle and the second law of thermodynamics, are proved with a new definition of entropy. This work will open new horizons in fusion processes, not only by controlling entropy in tokamak plasmas—particularly in the pedestal regions of the H-mode and space plasmas—but also in engineering sciences.

Tracing the Pathway from Drift-Wave Turbulence with Broken Symmetry to the Production of Sheared Axial Mean Flow

NASA Astrophysics Data System (ADS)

Hong, R.; Li, J. C.; Chakraborty Thakur, S.; Hajjar, R.; Diamond, P. H.; Tynan, G. R.

2018-05-01

This study traces the emergence of sheared axial flow from collisional drift-wave turbulence with broken symmetry in a linear plasma device—the controlled shear decorrelation experiment. As the density profile steepens, the axial Reynolds stress develops and drives a radially sheared axial flow that is parallel to the magnetic field. Results show that the nondiffusive piece of the Reynolds stress is driven by the density gradient, results from spectral asymmetry of the turbulence, and, thus, is dynamical in origin. Taken together, these findings constitute the first simultaneous demonstration of the causal link between the density gradient, turbulence, and stress with broken spectral symmetry and the mean axial flow.

[Individual therapy goals: on outcome documentation of inpatient psychotherapy from the patient and therapist viewpoint].

PubMed

Heuft, G; Senf, W; Wagener, R; Pintelon, C; Lorenzen, J

1996-01-01

The results of a study evaluation in practicability of two newly developed documentation forms are presented. Examined are 82 inpatient treatment episodes in an already published clinical concept with different treatment settings. Parallel versions of the forms were completed by patients and therapists. The 'Erge-Doku-A-Form' allows for the naming of up to five therapy goals determined at the beginning of therapy and evaluated in relation to their achieved quality at the end of therapy. The 'Erge-Doku-B-Form' describes a variety of problem areas as well as questions related to medication and changes induced by therapy. Surprising there were a high number of 230 Individual Therapy Goals (ITG) by patients and 262 ITG by therapists which could be arranged into 89 content categories and 5 main categories. Outcome measurement shows different results. There was a significant relationship between the 'well-being', the impression of 'satisfying treatment' at the end of the inpatient period and 'success in the main ITG'. The documentation forms presented here allow an outcome-measurement depending on differential indications.

[Influence of the difference in the pollen count on medical costs in an allergen-specific immunotherapy for Japanese cedar pollinosis].

PubMed

Yuta, Atsushi; Miyamoto, Yukiko; Hattori, Reiko; Ogihara, Hitomi; Takeuchi, Kazuhiko; Majima, Yuichi

2007-11-01

We studied medical economic efficacy and influence by the different number of pollen scattering in patients treated with allergen-specific immunotherapy for Japanese cedar pollinosis. We calculated medical treatment costs and the medicine expense from medical records in eighteen cedar pollinosis patients treated with allergen-specific immunotherapy (IT-G) and with medications (M-G). We examined with the same patients for three years of different pollen scattering, mass scattering year (2005), moderate scattering year (2003), a few scattering year (2004). Furthermore, satisfaction of treatment and symptom score measured by visual analog scale in both subjects was studied in a mass scattering year. Total medical costs at hospital was cheaper in IT-G than in M-G. The result was depended on prescribed medical costs. In addition, prescribed medicine agents and total medical costs did not increase by the mass scattering year of pollen. Satisfaction of treatment and symptom score in IT-G was better than that in M-G. Immunotherapy had a benefit on a medical economy.

Experience in production of (68)Ga-DOTA-NOC for clinical use under an Expanded Access IND.

PubMed

Green, Mark A; Mathias, Carla J; Fletcher, James W

2016-10-01

[(68)Ga]Ga-DOTA-NOC was produced under an Expanded Access IND for 174 clinical PET/CT studies to evaluate patients with neuroendocrine tumors. Production employed either the TiO2-based Eckert & Ziegler (EZAG) (68)Ge/(68)Ga-generator (with fractionated elution), or the SiO2-based ITG (68)Ge/(68)Ga-generator. In both cases, [(68)Ga]Ga-DOTA-NOC was reliably produced, without pre-synthesis purification of the(68)Ga generator eluate, using readily-implemented manual synthesis procedures. [(68)Ga]Ga-DOTA-NOC radiochemical purity averaged 99.2±0.4%. Administered (68)Ga dose averaged 181±22 MBq, and administered peptide mass averaged 43.2±5.2µg (n=47) and 23.9±5.7µg (n=127), respectively, using the EZAG and ITG generators. At dose expiration, (68)Ge breakthrough in the final product averaged 2.7×10(-7)% and 5.4×10(-5%) using the EZAG and ITG generators, respectively. Copyright © 2016 Elsevier Ltd. All rights reserved.

Generation of parasitic axial flow by drift wave turbulence with broken symmetry: Theory and experiment

NASA Astrophysics Data System (ADS)

Hong, R.; Li, J. C.; Hajjar, R.; Chakraborty Thakur, S.; Diamond, P. H.; Tynan, G. R.

2018-05-01

Detailed measurements of intrinsic axial flow generation parallel to the magnetic field in the controlled shear decorrelation experiment linear plasma device with no axial momentum input are presented and compared to theory. The results show a causal link from the density gradient to drift-wave turbulence with broken spectral symmetry and development of the axial mean parallel flow. As the density gradient steepens, the axial and azimuthal Reynolds stresses increase and radially sheared azimuthal and axial mean flows develop. A turbulent axial momentum balance analysis shows that the axial Reynolds stress drives the radially sheared axial mean flow. The turbulent drive (Reynolds power) for the azimuthal flow is an order of magnitude greater than that for axial flow, suggesting that the turbulence fluctuation levels are set by azimuthal flow shear regulation. The direct energy exchange between axial and azimuthal mean flows is shown to be insignificant. Therefore, the axial flow is parasitic to the turbulence-zonal flow system and is driven primarily by the axial turbulent stress generated by that system. The non-diffusive, residual part of the axial Reynolds stress is found to be proportional to the density gradient and is formed due to dynamical asymmetry in the drift-wave turbulence.

RF cavity design and qualification for proton accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Teotia, Vikas; Malhotra, Sanjay; Ukarde, Priti

Alvarez type Drift Tube Linac (DTL) is used for acceleration of proton beam in low energy section of beta ranging from 0.04 to 0.40. DTL is cylindrical RF cavity resonating in TM010 mode at 352.21 MHz frequency. It consists of array of drift tubes arranged ensuring that DTL centre and Drift Tube centre are concentric. The Drift Tubes also houses Permanent Magnet Quadrupole for transverse focusing of proton beam. A twelve cell prototype of DTL section is designed, developed and fabricated at Bhabha Atomic Research Centre, Trombay. Complete DTL accelerator consists of eight such DTL sections. High frequency microwave simulationsmore » are carried out in SOPRANO, vector fields and COMSOL simulation software. This prototype DTL is 1640.56 mm long cavity with 520 mm ID, 600 mm OD and consists of eleven Drift Tubes, two RF end flanges, three slug tuners, six post couplers, three RF field monitors, one RF waveguide coupler, two DN100 vacuum flanges and DTL tank platform with alignment features. Girder based Drift tube mounting arrangement utilizing uncompressing energy of disc springs for optimum combo RF-vacuum seal compression is worked out and implemented. This paper discusses design of this RF vacuum cavity operating at high accelerating field gradient in ultra-high vacuum. Detailed vacuum design and results of RF and vacuum qualifications are discussed. Results on mechanical accuracy achieved on scaled pre-prototype are also presented. Paper summarizes the engineering developments carried out for this RF cavity and brings out the future activities proposed in indigenous development of high gradient RF cavities for ion accelerators. (author)« less

Effects of density gradient caused by multi-pulsing CHI on two-fluid flowing equilibria of spherical torus plasmas

NASA Astrophysics Data System (ADS)

Kanki, T.; Nagata, M.

2014-10-01

Two-fluid dynamo relaxation is examined to understand sustainment mechanism of spherical torus (ST) plasmas by multi-pulsing CHI (M-CHI) in the HIST device. The steeper density gradient between the central open flux column (OFC) and closed flux regions by applying the second CHI pulse is observed to cause not only the E × B drift but also the ion diamagnetic drift, leading the two-fluid dynamo. The purpose of this study is to investigate the effects of the steep change in the density gradient on the ST equilibria by using the two-fluid equilibrium calculations. The toroidal magnetic field becomes from a diamagnetic to a paramagnetic profile in the closed flux region while it remains a diamagnetic profile in the OFC region. The toroidal ion flow velocity is increased from negative to positive values in the closed flux region. Here, the negative ion flow velocity is the opposite direction to the toroidal current. The poloidal ion flow velocity between the OFC and closed flux regions is increased, because the ion diamagnetic drift velocity is changed in the same direction as the E × B drift velocity through the steeper ion pressure gradient. As a result, the strong shear flow and the paramagnetic toroidal field are generated in the closed flux region. Here, the ion flow velocity is the same direction as the poloidal current. The radial electric field shear between the OFC and closed flux regions is enhanced due to the strong dependence on the magnetic force through the interaction of toroidal ion flow velocity and axial magnetic field. The two-fluid effect is significant there due to the ion diamagnetic effect.

Hydrolysis of Sequenced β-Casein Peptides Provides New Insight into Peptidase Activity from Thermophilic Lactic Acid Bacteria and Highlights Intrinsic Resistance of Phosphopeptides

PubMed Central

Deutsch, Stéphanie-Marie; Molle, Daniel; Gagnaire, Valérie; Piot, Michel; Atlan, Danièle; Lortal, Sylvie

2000-01-01

The peptidases of thermophilic lactic acid bacteria have a key role in the proteolysis of Swiss cheeses during warm room ripening. To compare their peptidase activities toward a dairy substrate, a tryptic/chymotryptic hydrolysate of purified β-casein was used. Thirty-four peptides from 3 to 35 amino acids, including three phosphorylated peptides, constitute the β-casein hydrolysate, as shown by tandem mass spectrometry. Cell extracts prepared from Lactobacillus helveticus ITG LH1, ITG LH77, and CNRZ 32, Lactobacillus delbrueckii subsp. lactis ITG LL14 and ITG LL51, L. delbrueckii subsp. bulgaricus CNRZ 397 and NCDO 1489, and Streptococcus thermophilus CNRZ 385, CIP 102303, and TA 060 were standardized in protein. The peptidase activities were assessed with the β-casein hydrolysate as the substrate at pH 5.5 and 24°C (conditions of warm room ripening) by (i) free amino acid release, (ii) reverse-phase chromatography, and (iii) identification of undigested peptides by mass spectrometry. Regardless of strain, L. helveticus was the most efficient in hydrolyzing β-casein peptides. Interestingly, cell extracts of S. thermophilus were not able to release a significant level of free proline from the β-casein hydrolysate, which was consistent with the identification of numerous dipeptides containing proline. With the three lactic acid bacteria tested, the phosphorylated peptides remained undigested or weakly hydrolyzed indicating their high intrinsic resistance to peptidase activities. Finally, several sets of peptides differing by a single amino acid in a C-terminal position revealed the presence of at least one carboxypeptidase in the cell extracts of these species. PMID:11097915

Plasma shaping effects on tokamak scrape-off layer turbulence

NASA Astrophysics Data System (ADS)

Riva, Fabio; Lanti, Emmanuel; Jolliet, Sébastien; Ricci, Paolo

2017-03-01

The impact of plasma shaping on tokamak scrape-off layer (SOL) turbulence is investigated. The drift-reduced Braginskii equations are written for arbitrary magnetic geometries, and an analytical equilibrium model is used to introduce the dependence of turbulence equations on tokamak inverse aspect ratio (ε ), Shafranov’s shift (Δ), elongation (κ), and triangularity (δ). A linear study of plasma shaping effects on the growth rate of resistive ballooning modes (RBMs) and resistive drift waves (RDWs) reveals that RBMs are strongly stabilized by elongation and negative triangularity, while RDWs are only slightly stabilized in non-circular magnetic geometries. Assuming that the linear instabilities saturate due to nonlinear local flattening of the plasma gradient, the equilibrium gradient pressure length {L}p=-{p}e/{{\

Plasma Irregularity Production in the Polar Cap F-Region Ionosphere

NASA Astrophysics Data System (ADS)

Lamarche, Leslie

Plasma in the Earth's ionosphere is highly irregular on scales ranging between a few centimeters and hundreds of kilometers. Small-scale irregularities or plasma waves can scatter radio waves resulting in a loss of signal for navigation and communication networks. The polar region is particularly susceptible to strong disturbances due to its direct connection with the Sun's magnetic field and energetic particles. In this thesis, factors that contribute to the production of decameter-scale plasma irregularities in the polar F region ionosphere are investigated. Both global and local control of irregularity production are studied, i.e. we consider global solar control through solar illumination and solar wind as well as much more local control by plasma density gradients and convection electric field. In the first experimental study, solar control of irregularity production is investigated using the Super Dual Auroral Radar Network (SuperDARN) radar at McMurdo, Antarctica. The occurrence trends for irregularities are analyzed statistically and a model is developed that describes the location of radar echoes within the radar's field-of-view. The trends are explained through variations in background plasma density with solar illumination affecting radar beam propagation. However, it is found that the irregularity occurrence during the night is higher than expected from ray tracing simulations based on a standard ionospheric density model. The high occurrence at night implies an additional source of plasma density and it is proposed that large-scale density enhancements called polar patches may be the source of this density. Additionally, occurrence maximizes around the terminator due to different competing irregularity production processes that favor a more or less sunlit ionosphere. The second study is concerned with modeling irregularity characteristics near a large-scale density gradient reversal, such as those expected near polar patches, with a particular focus on the asymmetry of the irregularity growth rate across the gradient reversal. Directional dependencies on the plasma density gradient, plasma drift, and wavevector are analyzed in the context of the recently developed general fluid theory of the gradient-drift instability. In the ionospheric F region, the strongest asymmetry is found when an elongated structure is oriented along the radar's boresight and moving perpendicular to its direction of elongation. These results have important implications for finding optimal configurations for oblique-scanning ionospheric radars such as SuperDARN to observe gradient reversals. To test the predictions of the developed model and the general theory of the gradient-drift instability, an experimental investigation is presented focusing on decameter-scale irregularities near a polar patch and the previously uninvestigated directional dependence of irregularity characteristics. Backscatter power and occurrence of irregularities are analyzed using measurements from the SuperDARN radar at Rankin Inlet, Canada, while background density gradients and convection electric fields are found from the north face of the Resolute Bay Incoherent Scatter Radar. It is shown that irregularity occurrence tends to follow the expected trends better than irregularity power, suggesting that while the gradient-drift instability may be a dominant process in generating small-scale irregularities, other mechanisms such as a shear-driven instability or nonlinear process may exert greater control over their intensity. It is concluded from this body of work that the production of small-scale plasma irregularities in the polar F-region ionosphere is controlled both by global factors such as solar illumination as well as local plasma density gradients and electric fields. In general, linear gradient-drift instability theory describes small-scale irregularity production well, particularly for low-amplitude perturbations. The production of irregularities is complex, and while ground-based radars are invaluable tools to study the ionosphere, care must be taken to interpret results correctly.

Radar observations of density gradients, electric fields, and plasma irregularities near polar cap patches in the context of the gradient-drift instability

NASA Astrophysics Data System (ADS)

Lamarche, Leslie J.; Makarevich, Roman A.

2017-03-01

We present observations of plasma density gradients, electric fields, and small-scale plasma irregularities near a polar cap patch made by the Super Dual Auroral Radar Network radar at Rankin Inlet (RKN) and the northern face of Resolute Bay Incoherent Scatter Radar (RISR-N). RKN echo power and occurrence are analyzed in the context of gradient-drift instability (GDI) theory, with a particular focus on the previously uninvestigated 2-D dependencies on wave propagation, electric field, and gradient vectors, with the latter two quantities evaluated directly from RISR-N measurements. It is shown that higher gradient and electric field components along the wave vector generally lead to the higher observed echo occurrence, which is consistent with the expected higher GDI growth rate, but the relationship with echo power is far less straightforward. The RKN echo power increases monotonically as the predicted linear growth rate approaches zero from negative values but does not continue this trend into positive growth rate values, in contrast with GDI predictions. The observed greater consistency of echo occurrence with GDI predictions suggests that GDI operating in the linear regime can control basic plasma structuring, but measured echo strength may be affected by other processes and factors, such as multistep or nonlinear processes or a shear-driven instability.

Fast Ion extraction from the MedEBIS

NASA Astrophysics Data System (ADS)

Höltermann, H.; Becker, R.; Kleinod, M.; Müller, I.

2004-01-01

Cancer therapy synchrotrons profit from single turn injection in terms of size, costs and easy operation. The MEdically Dedicated EBIS (MEDEBIS), built in Frankfurt, will deliver short (~1.5 µs) and intense (~1.3 mA) pulses of highly charged light ions (C, N, O) to meet the requirements for therapy facilities. The MEDEBIS operates with an electron beam of 400 mA at 5 keV and a ratio of beam to drift tube of 1/20. Drift tube potentials up to 1.6 kV are switched in some 100 ns to deliver a 1.5 µs ion pulse at an axial field gradient of 6.5 kV/m. On extraction, all potentials applied to the drift tubes are set to a given primary potential to define the extraction gradient. During extraction the drift tubes are not held at constant voltage to avoid spreading out of the pulse due to the restoration of the full space charge depression at locations where ions have already been extracted. To locally distribute the action of the applied potentials the drift tubes are fully interpenetrating each other with tapered fingers. Combining these features result in a potential wall, which follows the extracted ion pulse and produces a compressed short ion pulse for single turn injection. In the future similar constructions could be considered for the RHIS EBIS device or proposed for LHC to provide the advantage with respect to lowest emittance and highest luminosity to the accelerators at BNL and CERN.

Gradient Drift Turbulence from Electron Bite-Outs: Dependence on Atmospheric Parameters.

NASA Astrophysics Data System (ADS)

Young, M.; Oppenheim, M. M.; Dimant, Y. S.

2017-12-01

Electron bite-outs are regions of decreased electron density without a corresponding decrease in ion density, often caused by electron attachment to dust grains. They typically occur in the upper D-/lower E-region ionosphere and the accompanying electron gradient provides free energy to drive the gradient drift instability (GDI). The major difference between classical GDI and electron bite-out driven GDI is that the instability occurs on the top side of the bite-out region in the latter, as opposed to the bottom side in the former, in the presence of a vertical background electric field. Moreover, the mobile plasma population contains a gradient in only one species while the entire system remains quasineutral. This modified geometry presents new pathways for instabilities as the ions build up near the bite-out layer, leaving behind depletions that ascend away from the layer. Previous simulation runs showed that the presence of an electron gradient drives GDI-like turbulence even when ions and electrons start in momentum balance. Furthermore, a simulation run that replaced the electron bite-out with a layer of enhanced ion density, as though ions and electrons had filled in the bite-out region, did not lead to instability. This work examines the role of atmospheric parameters at altitudes between 80-100 km in instability formation and turbulence development, including the role of collisions in impeding instability growth as altitude decreases. Key parameters include the ambient electric field, which plays a critical role in triggering the gradient-drift instability; collision frequencies and temperature, which vary with altitude and effect the turbulent growth rate; and relative charge density of the bite-out, which increases the electron gradient strength. This work provides insight into how electron bite-out layers can produce turbulence that ground-based high frequency (HF) radars may be able to observe. The upper D-/lower E-region ionosphere is generally difficult to study in situ, making simulations of ground-based observables much more important. Assuming that electron bite-out layers result from dust charging in particular will allow the community to use the predictions of this work to study the ionospheric dust population.

Investigation of the mediating effects of IT governance-value delivery on service quality and ERP performance

NASA Astrophysics Data System (ADS)

Tsai, Wen-Hsien; Chou, Yu-Wei; Leu, Jun-Der; Chao Chen, Der; Tsaur, Tsen-Shu

2015-02-01

This study aimed to explore the mediating effects of IT governance (ITG)-value delivery in the relationships among the quality of vendor service, the quality of consultant services, ITG-value delivery and enterprise resource planning (ERP) performance. The sampling of this research was acquired from a questionnaire survey concerning ERP implementations in Taiwan. In this survey, 4366 questionnaires were sent to manufacturing and service companies listed in the TOP 5000: The Largest Corporations in Taiwan 2009. The results showed that an ERP system will exhibit a decreased error rate and improved performance if ERP system vendors and consultants provide good service quality. The results also demonstrated that significant relationships exist among the quality of vendor service, the quality of consultant services and value delivery. The contribution of this article is twofold. First, it found that value delivery provides an effective measure of ERP performance under an ITG framework. Second, it provides evidence of the partial mediating effects of value delivery between service quality and ERP performance. In other words, if enterprises want to improve ERP performance, they need to consider factors such as value delivery and the quality of a vendor/consultant's service.

Gyrokinetic theory of slab universal modes and the non-existence of the gradient drift coupling (GDC) instability

NASA Astrophysics Data System (ADS)

Rogers, Barrett N.; Zhu, Ben; Francisquez, Manaure

2018-05-01

A gyrokinetic linear stability analysis of a collisionless slab geometry in the local approximation is presented. We focus on k∥=0 universal (or entropy) modes driven by plasma gradients at small and large plasma β. These are small scale non-MHD instabilities with growth rates that typically peak near k⊥ρi˜1 and vanish in the long wavelength k⊥→0 limit. This work also discusses a mode known as the Gradient Drift Coupling (GDC) instability previously reported in the gyrokinetic literature, which has a finite growth rate γ=√{β/[2 (1 +β)] }Cs/|Lp| with Cs2=p0/ρ0 for k⊥→0 and is universally unstable for 1 /Lp≠0 . We show that the GDC instability is a spurious, unphysical artifact that erroneously arises due to the failure to respect the total equilibrium pressure balance p0+B02/(8 π)=constant , which renders the assumption B0'=0 inconsistent if p0'≠0 .

MONITORING OF PORE WATER PRESSURE AND WATER CONTENT AROUND A HORIZONTAL DRIFT THROUGH EXCAVATION - MEASUREMENT AT THE 140m GALLERY IN THE HORONOBE URL -

NASA Astrophysics Data System (ADS)

Yabuuchi, Satoshi; Kunimaru, Takanori; Kishi, Atsuyasu; Komatsu, Mitsuru

Japan Atomic Energy Agency has been conducting the Horonobe Underground Research Laboratory (URL) project in Horonobe, Hokkaido, as a part of the research and development program on geological disposal of high-level radioactive waste. Pore water pressure and water content around a horizontal drift in the URL have been monitored for over 18 months since before the drift excavation was started. During the drift excavation, both pore water pressure and water content were decreasing. Pore water pressure has been still positive though it continued to decrease with its gradient gradually smaller after excavation, while water content turned to increase about 6 months after the completion of the excavation. It turned to fall again about 5 months later. An unsaturated zone containing gases which were dissolved in groundwater may have been formed around the horizontal drift.

Characteristics of Muti-pulsing CHI driven ST plasmas on HIST

NASA Astrophysics Data System (ADS)

Ishihara, M.; Hanao, T.; Ito, K.; Matsumoto, K.; Higashi, T.; Kikuchi, Y.; Fukumoto, N.; Nagata, M.

2011-10-01

The flux amplification and sustainment of the ST configurations by operating in Multi-pulsing Coaxial Helicity Injection (M-CHI) method have been demonstrated on HIST. The multi-pulsing experiment was demonstrated in the SSPX spheromak device at LLNL. In the double pulsing discharges, we have observed that the plasma current has been sustained much longer against the resistive decay as compared to the single CHI. We have measured the radial profiles of the flow velocities by using Ion Doppler Spectrometer and Mach probes. The result shows that poloidal shear flow exists between the open flux column and the most outer closed flux surface. The poloidal velocity shear at the interface may be caused by the ion diamagnetic drift, because of a steep density gradient there. The radial electric field is determined by the flow velocities and the ion pressure gradient through the radial momentum balance equation. We have investigated the contribution of ExB or the ion pressure gradient on the poloidal velocity shear by comparing the impurity ion flow obtained from the IDS with the bulk ion flow from the Mach probe. It should be noted that the diamagnetic drift velocity of the impurity is much smaller than ExB drift velocity. We will discuss characteristics of M-CHI-driven ST plasmas by varying TF coil current and the line averaged electron density.

Gyrokinetic GDC turbulence simulations: confirming a new instability regime in LAPD plasmas

NASA Astrophysics Data System (ADS)

Pueschel, M. J.; Rossi, G.; Told, D.; Terry, P. W.; Jenko, F.; Carter, T. A.

2016-10-01

Recent high-beta experiments at the LArge Plasma Device have found significant parallel magnetic fluctuations in the region of large pressure gradients. Linear gyrokinetic simulations show the dominant instability at these radii to be the gradient-driven drift coupling (GDC) mode, a non-textbook mode driven by pressure gradients and destabilized by the coupling of ExB and grad-B∥ drifts. Unlike in previous studies, the large parallel extent of the device allows for finite-kz versions of this instability in addition to kz = 0 . The locations of maximum linear growth match very well with experimentally observed peaks of B∥ fluctuations. Local nonlinear simulations reproduce many features of the observations fairly well, with the exception of Bperp fluctuations, for which experimental profiles suggest a source unrelated to pressure gradients. In toto, the results presented here show that turbulence and transport in these experiments are driven by the GDC instability, that important characteristics of the linear instability carry over to nonlinear simulations, and - in the context of validation - that the gyrokinetic framework performs surprisingly well far outside its typical area of application, increasing confidence in its predictive abilities. Supported by U.S. DOE.

Fluid equations with nonlinear wave-particle resonances^

NASA Astrophysics Data System (ADS)

Mattor, Nathan

1997-11-01

We have derived fluid equations that include linear and nonlinear wave-particle resonance effects. This greatly extends previous ``Landau-fluid'' closures, which include linear Landau damping. (G.W. Hammett and F.W. Perkins, Phys. Rev. Lett. 64,) 3019 (1990).^, (Z. Chang and J. D. Callen, Phys. Fluids B 4,) 1167 (1992). The new fluid equations are derived with no approximation regarding nonlinear kinetic interaction, and so additionally include numerous nonlinear kinetic effects. The derivation starts with the electrostatic drift kinetic equation for simplicity, with a Maxwellian distribution function. Fluid closure is accomplished through a simple integration trick applied to the drift kinetic equation, using the property that the nth moment of Maxwellian distribution is related to the nth derivative. The result is a compact closure term appearing in the highest moment equation, a term which involves a plasma dispersion function of the electrostatic field and its derivatives. The new term reduces to the linear closures in appropriate limits, so both approaches retain linear Landau damping. But the nonlinearly closed equations have additional desirable properties. Unlike linear closures, the nonlinear closure retains the time-reversibility of the original kinetic equation. We have shown directly that the nonlinear closure retains at least two nonlinear resonance effects: wave-particle trapping and Compton scattering. Other nonlinear kinetic effects are currently under investigation. The new equations correct two previous discrepancies between kinetic and Landau-fluid predictions, including a propagator discrepancy (N. Mattor, Phys. Fluids B 4,) 3952 (1992). and a numerical discrepancy for the 3-mode shearless bounded slab ITG problem. (S. E. Parker et al.), Phys. Plasmas 1, 1461 (1994). ^* In collaboration with S. E. Parker, Department of Physics, University of Colorado, Boulder. ^ Work performed at LLNL under DoE contract No. W7405-ENG-48.

Pressure balance inconsistency exhibited in a statistical model of magnetospheric plasma

NASA Astrophysics Data System (ADS)

Garner, T. W.; Wolf, R. A.; Spiro, R. W.; Thomsen, M. F.; Korth, H.

2003-08-01

While quantitative theories of plasma flow from the magnetotail to the inner magnetosphere typically assume adiabatic convection, it has long been understood that these convection models tend to overestimate the plasma pressure in the inner magnetosphere. This phenomenon is called the pressure crisis or the pressure balance inconsistency. In order to analyze it in a new and more detailed manner we utilize an empirical model of the proton and electron distribution functions in the near-Earth plasma sheet (-50 RE < X < -10 RE), which uses the [1989] magnetic field model and a plasma sheet representation based upon several previously published statistical studies. We compare our results to a statistically derived particle distribution function at geosynchronous orbit. In this analysis the particle distribution function is characterized by the isotropic energy invariant λ = EV2/3, where E is the particle's kinetic energy and V is the magnetic flux tube volume. The energy invariant is conserved in guiding center drift under the assumption of strong, elastic pitch angle scattering. If, in addition, loss is negligible, the phase space density f(λ) is also conserved along the same path. The statistical model indicates that f(λ, ?) is approximately independent of X for X ≤ -35 RE but decreases with increasing X for X ≥ -35 RE. The tailward gradient of f(λ, ?) might be attributed to gradient/curvature drift for large isotropic energy invariants but not for small invariants. The tailward gradient of the distribution function indicates a violation of the adiabatic drift condition in the plasma sheet. It also confirms the existence of a "number crisis" in addition to the pressure crisis. In addition, plasma sheet pressure gradients, when crossed with the gradient of flux tube volume computed from the [1989] magnetic field model, indicate Region 1 currents on the dawn and dusk sides of the outer plasma sheet.

Gyrokinetic water-bag modeling of a plasma column: Magnetic moment distribution and finite Larmor radius effects

NASA Astrophysics Data System (ADS)

Klein, R.; Gravier, E.; Morel, P.; Besse, N.; Bertrand, P.

2009-08-01

Describing turbulent transport in fusion plasmas is a major concern in magnetic confinement fusion. It is now widely known that kinetic and fluid descriptions can lead to significantly different properties. Although more accurate, the kinetic calculation of turbulent transport is much more demanding of computer resources than fluid simulations. An alternative approach is based on a water-bag representation of the distribution function that is not an approximation but rather a special class of initial conditions, allowing one to reduce the full kinetic Vlasov equation into a set of hydrodynamics equations while keeping its kinetic character [P. Morel, E. Gravier, N. Besse et al., Phys. Plasmas 14, 112109 (2007)]. In this paper, the water-bag concept is used in a gyrokinetic context to study finite Larmor radius effects with the possibility of using the full Larmor radius distribution instead of an averaged Larmor radius. The resulting model is used to study the ion temperature gradient (ITG) instability.

Do insect repellents induce drift behaviour in aquatic non-target organisms?

PubMed

Fink, Patrick; Moelzner, Jana; Berghahn, Ruediger; von Elert, Eric

2017-01-01

Synthetic insect repellents are compounds applied to surfaces to discourage insects, mainly mosquitoes, from landing on those surfaces. As some of these repellents have repeatedly been detected in surface waters at significant concentrations, they may also exert repellent effects on aquatic non-target organisms. In running water systems, aquatic invertebrates actively enter downstream drift in order to avoid unfavourable environmental conditions. We thus tested the hypothesis that the widely used insect repellents DEET (N,N-Diethyl-m-toluamide), EBAAP (3-[N-butyl-N-acetyl]-aminopropionic acid ethyl ester) and Icaridin (1-piperidinecarboxylic acid 2-(2-hydroxyethyl)-1-methylpropyl ester) induce downstream drift behaviour in the aquatic invertebrates Gammarus pulex (Crustacea, Amphipoda) and Cloeon dipterum (Insecta, Ephemeroptera), using a laboratory-scale drift assay. We found no clear increase in the drift behaviour of both invertebrate species across a concentration gradient of eight orders of magnitude and even beyond maximum environmental concentrations for any of the three repellents. We found no evidence for a direct drift-inducing activity of insect repellents on aquatic non-target organisms. Copyright © 2016 Elsevier Ltd. All rights reserved.

Plasma Drift Rates During and Preceding Equatorial Spread F Inferred by the HF Doppler Technique

NASA Astrophysics Data System (ADS)

Miller, E. S.; Hilton, A. J.; Chartier, A.

2017-12-01

The quiet time afternoon and evening equatorial and low-latitude ionosphere is characterized by increasing vertical drift and sharpening plasma density gradient in the lower F region. This combination of effects leads to the plasma instability cascade known imprecisely as "equatorial spread F." In this work, we utilize a simple transequatorial HF Doppler observation to infer the vertical and horizontal plasma drifts preceding and during spread-F conditions. The data exhibit three behavior regimes indicative of three different processes: The first is a slow vertical drift that may be due to either increasing vertical plasma drifts or recombination of the bottomside. The second is an explosive spread Doppler signature (indicating relative velocities of 600 m/s or more) that is associated with the initiation of the spread-F depletions. Finally, the third is a structure that represents a changing HF propagation channel as radio rays propagate through the regions of depleted-but still unstable-plasma. Observations of the March 2016 Pacific total solar eclipse will also be included as a test case for the effects of vertical drifts versus recombination.

The effect of two different interval-training programmes on physiological and performance indices.

PubMed

Sindiani, Mahmood; Eliakim, Alon; Segev, Daria; Meckel, Yoav

2017-08-01

The aim of the present study was to compare the effect of an increasing-distance, interval-training programme and a decreasing-distance, interval-training programme, matched for total distance, on aerobic and anaerobic physiological indices. Forty physical education students were randomly assigned to either the increasing- or decreasing-distance, interval-training group (ITG and DTG), and completed two similar relevant sets of tests before and after six weeks of training. One training programme consisted of increasing-distance interval-training (100-200-300-400-500 m) and the other decreasing-distance interval training (500-400-300-200-100 m). While both training programmes led to a significant improvement in VO 2 max (ES = 0.83-1.25), the improvement in the DTG was significantly greater than in the ITG (14.5 ± 3.6 vs. 7.8 ± 3.2%, p < .05). In addition, while both training programmes led to a significant improvement in all anaerobic indices (ES = 0.83-1.63), the improvements in peak power (15.7 ± 7.8 vs. 8.9 ± 4.7), mean power (10.6 ± 5.4 vs. 6.8 ± 4.4), and fatigue index (18.2 ± 10.9 vs. 7.0 ± 14.2) were significantly greater in the DTG compared to the ITG (p < .05). The main finding of the present study was that beyond the significant positive effects of both training programmes on aerobic and anaerobic fitness, the DTG showed significant superiority over the ITG in improving aerobic and anaerobic performance capabilities. Coaches and athletes should therefore be aware that, in spite of identical total work, an interval-training programme might induce different physiological impacts if the order of intervals is not identical.

Efficacy of a New Ocular Surface Modulator in Restoring Epithelial Changes in an In Vitro Model of Dry Eye Syndrome.

PubMed

Barabino, Stefano; De Servi, Barbara; Aragona, Salvatore; Manenti, Demetrio; Meloni, Marisa

2017-03-01

So far tear substitutes have demonstrated a limited role in restoring ocular surface damage in dry eye syndrome (DES). The aim of this study was to assess the efficacy of a new ocular surface modulator in an in vitro model of human corneal epithelium (HCE) damaged by severe osmotic stress mirroring the features of dry eye conditions. A reconstructed HCE model challenged by the introduction of sorbitol in the culture medium for 16 h was used to induce an inflammatory pathway and to impair the tight junctions integrity determining a severe modification of the superficial layer ultrastructure. At the end of the overnight stress period in the treated HCE series, 30 μl of the ocular surface modulator (T-LysYal, Sildeha, Switzerland) and of hyaluronic acid (HA) in the control HCE series were applied for 24 h. The following parameters were quantified: scanning electron microscopy (SEM), trans-epithelial electrical resistance (TEER), immunofluorescence analysis of integrin β1 (ITG-β1), mRNA expression of Cyclin D-1 (CCND1), and ITG-β1. In the positive control after the osmotic stress the HCE surface damage was visible at the ultrastructural level with loss of cell-cell interconnections, intercellular matrix destruction, and TEER reduction. After 24 h of treatment with T-LysYal, HCE showed a significant improvement of the ultrastructural morphological organization and increased expression of ITG-β1 at the tissue level when compared to positive and control series. A significant increase of mRNA expression for ITG-β1 and CCND1 was shown in the HA-treated cells compared to T-LysYal. TEER measurement showed a significant reduction in all groups after 16 h without modifications after the treatment period. This study has shown the possibility of a new class of agents denominated ocular surface modulators to restore corneal cells damaged by dry eye conditions. Further in vivo studies are certainly necessary to confirm these results.

A latitudinal diversity gradient in terrestrial bacteria of the genus Streptomyces

DOE PAGES

Andam, Cheryl P.; Doroghazi, James R.; Campbell, Ashley N.; ...

2016-04-12

We show that Streptomyces biogeography in soils across North America is influenced by the regional diversification of microorganisms due to dispersal limitation and genetic drift. Streptomyces spp. form desiccation-resistant spores, which can be dispersed on the wind, allowing for a strong test of whether dispersal limitation governs patterns of terrestrial microbial diversity. We employed an approach that has high sensitivity for determining the effects of genetic drift. Specifically, we examined the genetic diversity and phylogeography of physiologically similar Streptomyces strains isolated from geographically distributed yet ecologically similar habitats. We found that Streptomyces beta diversity scales with geographic distance and bothmore » beta diversity and phylogenetic diversity manifest in a latitudinal diversity gradient. This pattern of Streptomyces biogeography resembles patterns seen for diverse species of plants and animals, and we therefore evaluated these data in the context of ecological and evolutionary hypotheses proposed to explain latitudinal diversity gradients. The data are consistent with the hypothesis that niche conservatism limits dispersal, and historical patterns of glaciation have limited the time for speciation in higher-latitude sites. Most notably, higher-latitude sites have lower phylogenetic diversity, higher phylogenetic clustering, and evidence of range expansion from lower latitudes. In addition, patterns of beta diversity partition with respect to the glacial history of sites. Furthermore, the data support the hypothesis that extant patterns of Streptomyces biogeography have been driven by historical patterns of glaciation and are the result of demographic range expansion, dispersal limitation, and regional diversification due to drift.« less

A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces

PubMed Central

Andam, Cheryl P.; Doroghazi, James R.; Campbell, Ashley N.; Kelly, Peter J.; Choudoir, Mallory J.

2016-01-01

ABSTRACT We show that Streptomyces biogeography in soils across North America is influenced by the regional diversification of microorganisms due to dispersal limitation and genetic drift. Streptomyces spp. form desiccation-resistant spores, which can be dispersed on the wind, allowing for a strong test of whether dispersal limitation governs patterns of terrestrial microbial diversity. We employed an approach that has high sensitivity for determining the effects of genetic drift. Specifically, we examined the genetic diversity and phylogeography of physiologically similar Streptomyces strains isolated from geographically distributed yet ecologically similar habitats. We found that Streptomyces beta diversity scales with geographic distance and both beta diversity and phylogenetic diversity manifest in a latitudinal diversity gradient. This pattern of Streptomyces biogeography resembles patterns seen for diverse species of plants and animals, and we therefore evaluated these data in the context of ecological and evolutionary hypotheses proposed to explain latitudinal diversity gradients. The data are consistent with the hypothesis that niche conservatism limits dispersal, and historical patterns of glaciation have limited the time for speciation in higher-latitude sites. Most notably, higher-latitude sites have lower phylogenetic diversity, higher phylogenetic clustering, and evidence of range expansion from lower latitudes. In addition, patterns of beta diversity partition with respect to the glacial history of sites. Hence, the data support the hypothesis that extant patterns of Streptomyces biogeography have been driven by historical patterns of glaciation and are the result of demographic range expansion, dispersal limitation, and regional diversification due to drift. PMID:27073097

Characterizing the nature of subpulse drifting in pulsars

NASA Astrophysics Data System (ADS)

Basu, Rahul; Mitra, Dipanjan

2018-04-01

We report a detailed study of subpulse drifting in four long-period pulsars. These pulsars were observed in the Meterwavelength Single-pulse Polarimetric Emission Survey and the presence of phase-modulated subpulse drifting was reported in each case. We carried out longer duration and more sensitive observations lasting 7000-12 000 periods in the frequency range 306-339 MHz. The drifting features were characterized in great detail, including the phase variations across the pulse window. For two pulsars, J0820-1350 and J1720-2933, the phases changed steadily across the pulse window. The pulsar J1034-3224 has five components. The leading component was very weak and was barely detectable in our single-pulse observations. The four trailing components showed subpulse drifting. The phase variations changed in alternate components with a reversal in the sign of the gradient. This phenomenon is known as bi-drifting. The pulsar J1555-3134 showed two distinct peak frequencies of comparable strengths in the fluctuation spectrum. The two peaks did not appear to be harmonically related and were most likely a result of different physical processes. Additionally, the long observations enabled us to explore the temporal variations of the drifting features. The subpulse drifting was largely constant with time but small fluctuations around a mean value were seen.

Density-Gradient Theory: A Macroscopic Approach to Quantum Confinement and Tunneling in Semiconductor Devices

DTIC Science & Technology

2011-01-01

that are attractive as luminescent biolabels, and possibly also for optoelectronic devices and solar cells . The equilibrium nature of such situations...The boundary layers as- sociated with the diffusion and Debye lengths are familiar, while that of LQ defines the layer in which the quantum in...circuits, transmission lines Diffusion -drift, density-gradient Semi-classical electron dynamics, Boltzmann transport Schrödinger, density- matrix, Wigner

Effects of finite electron temperature on gradient drift instabilities in partially magnetized plasmas

NASA Astrophysics Data System (ADS)

Lakhin, V. P.; Ilgisonis, V. I.; Smolyakov, A. I.; Sorokina, E. A.; Marusov, N. A.

2018-01-01

The gradient-drift instabilities of partially magnetized plasmas in plasma devices with crossed electric and magnetic fields are investigated in the framework of the two-fluid model with finite electron temperature in an inhomogeneous magnetic field. The finite electron Larmor radius (FLR) effects are also included via the gyroviscosity tensor taking into account the magnetic field gradient. This model correctly describes the electron dynamics for k⊥ρe>1 in the sense of Padé approximants (here, k⊥ and ρe are the wavenumber perpendicular to the magnetic field and the electron Larmor radius, respectively). The local dispersion relation for electrostatic plasma perturbations with the frequency in the range between the ion and electron cyclotron frequencies and propagating strictly perpendicular to the magnetic field is derived. The dispersion relation includes the effects of the equilibrium E ×B electron current, finite ion velocity, electron inertia, electron FLR, magnetic field gradients, and Debye length effects. The necessary and sufficient condition of stability is derived, and the stability boundary is found. It is shown that, in general, the electron inertia and FLR effects stabilize the short-wavelength perturbations. In some cases, such effects completely suppress the high-frequency short-wavelength modes so that only the long-wavelength low-frequency (with respect to the lower-hybrid frequency) modes remain unstable.

Concepts and procedures required for successful reduction of tensor magnetic gradiometer data obtained from an unexploded ordnance detection demonstration at Yuma Proving Grounds, Arizona

USGS Publications Warehouse

Bracken, Robert E.; Brown, Philip J.

2006-01-01

On March 12, 2003, data were gathered at Yuma Proving Grounds, in Arizona, using a Tensor Magnetic Gradiometer System (TMGS). This report shows how these data were processed and explains concepts required for successful TMGS data reduction. Important concepts discussed include extreme attitudinal sensitivity of vector measurements, low attitudinal sensitivity of gradient measurements, leakage of the common-mode field into gradient measurements, consequences of thermal drift, and effects of field curvature. Spatial-data collection procedures and a spin-calibration method are addressed. Discussions of data-reduction procedures include tracking of axial data by mathematically matching transfer functions among the axes, derivation and application of calibration coefficients, calculation of sensor-pair gradients, thermal-drift corrections, and gradient collocation. For presentation, the magnetic tensor at each data station is converted to a scalar quantity, the I2 tensor invariant, which is easily found by calculating the determinant of the tensor. At important processing junctures, the determinants for all stations in the mapped area are shown in shaded relief map-view. Final processed results are compared to a mathematical model to show the validity of the assumptions made during processing and the reasonableness of the ultimate answer obtained.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vaezi, P.; Holland, C.; Thakur, S. C.

The Controlled Shear Decorrelation Experiment (CSDX) linear plasma device provides a unique platform for investigating the underlying physics of self-regulating drift-wave turbulence/zonal flow dynamics. A minimal model of 3D drift-reduced nonlocal cold ion fluid equations which evolves density, vorticity, and electron temperature fluctuations, with proper sheath boundary conditions, is used to simulate dynamics of the turbulence in CSDX and its response to changes in parallel boundary conditions. These simulations are then carried out using the BOUndary Turbulence (BOUT++) framework and use equilibrium electron density and temperature profiles taken from experimental measurements. The results show that density gradient-driven drift-waves are themore » dominant instability in CSDX. However, the choice of insulating or conducting endplate boundary conditions affects the linear growth rates and energy balance of the system due to the absence or addition of Kelvin-Helmholtz modes generated by the sheath-driven equilibrium E × B shear and sheath-driven temperature gradient instability. Moreover, nonlinear simulation results show that the boundary conditions impact the turbulence structure and zonal flow formation, resulting in less broadband (more quasi-coherent) turbulence and weaker zonal flow in conducting boundary condition case. These results are qualitatively consistent with earlier experimental observations.« less

Van Allen Probes observations of drift-bounce resonance and energy transfer between energetic ring current protons and poloidal Pc4 wave

NASA Astrophysics Data System (ADS)

Oimatsu, S.; Masahito, N.; Takahashi, K.; Yamamoto, K.; Keika, K.; Kletzing, C.; MacDowall, R. J.; Smith, C.; Mitchell, D. G.

2017-12-01

Poloidal Pc4 wave and proton flux oscillation due to the drift-bounce resonance are observed in the inner magnetosphere on the dayside near the magnetic equator by the Van Allen Probes spacecraft on 2 March 2014. The flux modulation is observed in the energy range of 67.0 keV to 268.8 keV with the same frequency of poloidal Pc4 wave. We estimate the resonant energy to be 120 keV for pitch angle (α) of 20º-40º or 140º-160º, and 170-180 keV for α=40º-60º or 120º-140º. The drift-bounce resonance theory gives the resonant energy of 110-120 keV, which is consistent with the observation for small α (or large α when α≥90º), but slightly higher than the observation for large α (or small α when α≥90º). We consider that this discrepancy of the resonant energy is due to the drift shell splitting. In order to examine the direction of energy flow between protons and the wave, we calculate the sign of the gradient of proton phase space density (df/dW) in both outbound and inbound paths. Results showed positive gradient in both paths, which means that the energy is transferred from the protons to the wave. During the appearance of poloidal Pc4 wave, the Dst* index shows a sudden increase of 6.7 nT. We estimate the total energy loss of the ring current from the recovery of the Dst* index and the variation of proton flux by the drift-bounce resonance. The estimated energy loss is almost comparable for both cases. Therefore, we suggest that the energy transfer from the ring current protons to the wave via the drift-bounce resonance cause the increase of Dst* index.

Eddy, drift wave and zonal flow dynamics in a linear magnetized plasma

PubMed Central

Arakawa, H.; Inagaki, S.; Sasaki, M.; Kosuga, Y.; Kobayashi, T.; Kasuya, N.; Nagashima, Y.; Yamada, T.; Lesur, M.; Fujisawa, A.; Itoh, K.; Itoh, S.-I.

2016-01-01

Turbulence and its structure formation are universal in neutral fluids and in plasmas. Turbulence annihilates global structures but can organize flows and eddies. The mutual-interactions between flow and the eddy give basic insights into the understanding of non-equilibrium and nonlinear interaction by turbulence. In fusion plasma, clarifying structure formation by Drift-wave turbulence, driven by density gradients in magnetized plasma, is an important issue. Here, a new mutual-interaction among eddy, drift wave and flow in magnetized plasma is discovered. A two-dimensional solitary eddy, which is a perturbation with circumnavigating motion localized radially and azimuthally, is transiently organized in a drift wave – zonal flow (azimuthally symmetric band-like shear flows) system. The excitation of the eddy is synchronized with zonal perturbation. The organization of the eddy has substantial impact on the acceleration of zonal flow. PMID:27628894

Cosmic-ray streaming and anisotropies

NASA Technical Reports Server (NTRS)

Forman, M. A.; Gleeson, L. J.

1975-01-01

The paper is concerned with the differential current densities and anisotropies that exist in the interplanetary cosmic-ray gas, and in particular with a correct formulation and simple interpretation of the momentum equation that describes these on a local basis. Two examples of the use of this equation in the interpretation of previous data are given. It is demonstrated that in interplanetary space, the electric-field drifts and convective flow parallel to the magnetic field of cosmic-ray particles combine as a simple convective flow with the solar wind, and that there exist diffusive currents and transverse gradient drift currents. Thus direct reference to the interplanetary electric-field drifts is eliminated, and the study of steady-state and transient cosmic-ray anisotropies is both more systematic and simpler.

A statistical study of ion pitch-angle distributions

NASA Technical Reports Server (NTRS)

Sibeck, D. G.; Mcentire, R. W.; Lui, A. T. Y.; Krimigis, S. M.

1987-01-01

Preliminary results of a statistical study of energetic (34-50 keV) ion pitch-angle distributions (PADs) within 9 Re of earth provide evidence for an orderly pattern consistent with both drift-shell splitting and magnetopause shadowing. Normal ion PADs dominate the dayside and inner magnetosphere. Butterfly PADs typically occur in a narrow belt stretching from dusk to dawn through midnight, where they approach within 6 Re of earth. While those ion butterfly PADs that typically occur on closed drift paths are mainly caused by drift-shell splitting, there is also evidence for magnetopause shadowing in observations of more frequent butterfly PAD occurrence in the outer magnetosphere near dawn than dusk. Isotropic and gradient boundary PADs terminate the tailward extent of the butterfly ion PAD belt.

Intratympanic steroids injection is effective for the treatment of drop attacks with Ménière's disease and delayed endolymphatic hydrops

PubMed Central

Liu, Bo; Leng, Yangming; Zhou, Renhong; Liu, Jingjing; Liu, Dongdong; Zhang, Su-Lin; Kong, Wei-Jia

2016-01-01

Abstract Drop attack (DA) associated with Ménière's disease (MD) and delayed endolymphatic hydrops (DEH) is not common and may cause life-threatening clinical problems. The intratympanic dexamethasone (ITD) is one of primary treatments for MD or DEH. Our study investigated the effect of ITD on the DA associated with endolymphatic hydrops (EH). We retrospectively reviewed 10 patients with MD- and DEH-associated DA between January 2009 and December 2013 in Outpatient Department of Otolaryngology, Union Hospital, Wuhan, China. Among them, 7 patients (5 cases with MD, 2 cases of DEH) received ITD (4 times, on weekly basis). Further repeated ITD courses or intratympanic gentamicin (ITG) were given if the vertigo was not satisfactorily controlled. The number of DA and status of vertigo control after intratympanic injection were evaluated. After a follow-up study lasting from 19 to 35 months, DA in 5 cases (71.4%) disappeared after initial ITD course. In 2 cases, DA was altogether controlled after an additional intratympanic injection (repeated ITD or/and ITG). This study showed that ITD promises to be a first-line conservative treatment for MD- or DEH-related DA since the steroid possesses no inner-ear toxicity. Furthermore, for MD- or DEH-related DA refractory to ITD, ITG can be an effective alternative. PMID:28033296

Characteristics of equatorial plasma bubbles observed by TEC map based on ground-based GNSS receivers over South America

NASA Astrophysics Data System (ADS)

Barros, Diego; Takahashi, Hisao; Wrasse, Cristiano M.; Figueiredo, Cosme Alexandre O. B.

2018-01-01

A ground-based network of GNSS receivers has been used to monitor equatorial plasma bubbles (EPBs) by mapping the total electron content (TEC map). The large coverage of the TEC map allowed us to monitor several EPBs simultaneously and get characteristics of the dynamics, extension and longitudinal distributions of the EPBs from the onset time until their disappearance. These characteristics were obtained by using TEC map analysis and the keogram technique. TEC map databases analyzed were for the period between November 2012 and January 2016. The zonal drift velocities of the EPBs showed a clear latitudinal gradient varying from 123 m s-1 at the Equator to 65 m s-1 for 35° S latitude. Consequently, observed EPBs are inclined against the geomagnetic field lines. Both zonal drift velocity and the inclination of the EPBs were compared to the thermospheric neutral wind, which showed good agreement. Moreover, the large two-dimensional coverage of TEC maps allowed us to study periodic EPBs with a wide longitudinal distance. The averaged values observed for the inter-bubble distances also presented a clear latitudinal gradient varying from 920 km at the Equator to 640 km at 30° S. The latitudinal gradient in the inter-bubble distances seems to be related to the difference in the zonal drift velocity of the EPB from the Equator to middle latitudes and to the difference in the westward movement of the terminator. On several occasions, the distances reached more than 2000 km. Inter-bubble distances greater than 1000 km have not been reported in the literature.

Partnership for Edge Physics Simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kritz, Arnold H.; Rafiq, Tariq

A major goal of our participation in the Edge Physics Simulation project has been to contribute to the understanding of the self-organization of tokamak turbulence fluctuations resulting in the formation of a staircase structure in the ion temperature. A second important goal is to demonstrate how small scale turbulence in plasmas self-organizes with dynamically driven quasi-stationary flow shear. These goals have been accomplished through the analyses of the statistical properties of XGC1 flux driven Gyrokinetic electrostatic ion temperature gradient (ITG) turbulence simulation data in which neutrals are included. The ITG turbulence data, and in particular fluctuation data, were obtained frommore » a massively parallel flux-driven gyrokinetic full-f particle-in-cell simulation of a DIII-D like equilibrium. Below some the findings are summarized. It was observed that the emergence of staircase structure is related to the variations in the normalized temperature gradient length (R/LT) and the poloidal flow shear. Average turbulence intensity is found to be large in the vicinity of minima in R/LTi, where ITG growth is expected to be lower. The distributions of the occurrences of potential fluctuation are found to be Gaussian away from the staircase-step locations, but they are found to be non-Gaussian in the vicinity of staircase-step locations. The results of analytically derived expressions for the distribution of the occurrences of turbulence intensity and intensity flux were compared with the corresponding quantities computed using XGC1 simulation data and good agreement is found. The derived expressions predicts inward and outward propagation of turbulence intensity flux in an intermittent fashion. The outward propagation of turbulence intensity flux occurs at staircase-step locations and is related to the change in poloidal flow velocity shear and to the change in the ion temperature gradient. The standard deviation, skewness and kurtosis for turbulence quantities were computed and found to be large in the vicinity of the staircase-step structures. Large values of skewness and kurtosis can be explained by a temporary opening and closing of the structure which allows turbulence intensity events to propagate. The staircase patterns may reduce the ion heat transport and a manipulation of these patterns may be used to optimize heat transport in tokamaks. An additional objective of the research in support of the Edge Physics Simulation initiative has been to improve the understanding of scrape-off layer thermal transport. In planning experiments and designing future tokamaks, it is important to understand the physical effects that contribute to divertor heat-load fluxes. The research accomplished will contribute to developing new models for the scrape-off layer region. The XGC0 code was used to compute the heat fluxes and the heat-load width in the outer divertor plates of C-Mod and DIII-D tokamaks. It was observed that the width of the XGC0 neoclassical heat-load was approximately inversely proportional to the total plasma current. Anomalous transport in the H-mode pedestal region of five Alcator C-Mod discharges, representing a collisionality scan, was analyzed. The understanding of anomalous transport in the pedestal region is important for the development of a comprehensive model for the H-mode pedestal slope. It was found that the electron thermal anomalous diffusivities at the pedestal top increase with the electron collisionality. This dependence can point to the DRIBM as the modes that drive the anomalous transport in the plasma edge of highly collisional discharges. The effects of plasma shaping on the H-mode pedestal structure was also investigated. The differences in the predicted H-mode pedestal width and height for the DIII-D discharges with different elongation and triangularities were discussed. For the discharges with higher elongation, it was found that the gradients of the plasma profiles in the H-mode pedestal reach semi-steady states. In these simulations, the pedestal slowly continued to evolve to higher pedestal pressures and bootstrap currents until the peeling ballooning stability conditions were satisfied. The discharges with lower elongation do not reach the semi-steady state, and ELM crashes were triggered at earlier times. The plasma elongation was found to have a stronger stabilizing effect than the plasma triangularity. For the discharges with lower elongation and lower triangularity, the ELM frequency was large, and the H-mode pedestal evolves rapidly. It was found that the temperature of neutrals in the scrape-off-layer region can affect the dynamics of the H-mode pedestal buildup. However, the final pedestal profiles were nearly independent of the neutral temperature. The elongation and triangularity affected the pedestal widths of plasma density and electron temperature profiles differently. This study illustrated a new mechanism for controlling the pedestal bootstrap current and the pedestal stability.« less

Mass Transfer and Rheology of Fiber Suspensions

NASA Astrophysics Data System (ADS)

Wang, Jianghui

Rheological and mass transfer properties of non-Brownian fiber suspensions are affected by fiber characteristics, fiber interactions, and processing conditions. In this thesis we develop several simulation methods to study the dynamics of single fibers in simple shear flow, as well as the rheology and mass transfer of fiber suspensions. Isolated, rigid, neutrally-buoyant, non-Brownian, slightly curved, nonchiral fibers in simple shear flow of an incompressible Newtonian fluid at low Reynolds number can drift steadily in the gradient direction without external forces or torques. The average drift velocity and direction depend on the fiber aspect ratio, curvature and initial orientation. The drift results from the coupling of rotational and translational dynamics, and the combined effects of flipping, scooping, and spinning motions of the fiber. Irreversible fiber collisions in the suspensions cause shear-induced diffusion. The shear-induced self-diffusivity of dilute suspensions of fibers increases with increasing concentration and increasing static friction between contacts. The diffusivities in both the gradient and vorticity directions are larger for suspensions of curved fibers than for suspensions of straight fibers. For suspensions of curved fibers, significant enhancements in the diffusivity in the gradient direction are attributed to fiber drift in the gradient direction. The shear-induced self-diffusivity of concentrated suspensions of fibers increases with increasing concentration before fiber networks or flocs are formed, after which the diffusivity decreases with increasing concentration. The diffusivity increases with increasing fiber equilibrium bending angle, effective stiffness, coefficient of static friction, and rate of collisions. The specific viscosity of fiber suspensions increases with increasing fiber curvature, friction coefficient between mechanical contacts, and solids concentration. The specific viscosity increases linearly with concentration in the dilute regime, and increases with the cube of the concentration in the semi-dilute regime. Concentrated fiber suspensions are highly viscous, shear thinning, and exhibit significant yield stresses and normal stress differences. Yield stresses scale with volume concentration and fiber aspect ratio in the same way as that observed in experiments. The first normal stress difference increases linearly with shear rate. The shear-induced diffusivity increases linearly with the derivative of the particle contribution to stress for dilute suspensions with respective to concentration. This correlation between rheology and shear-induced diffusion makes it possible to predict diffusivity from easily measured rheological properties.

Electromagnetic turbulence and transport in increased β LAPD Plasmas

NASA Astrophysics Data System (ADS)

Rossi, Giovanni; Carter, Troy; Pueschel, Mj; Jenko, Frank; Terry, Paul; Told, Daniel

2016-10-01

The new LaB6 plasma source in LAPD has enabled the production of magnetized, increased β plasmas (up to 15%). We report on the modifications of pressure-gradient-driven turbulence and transport with increased plasma β. Density fluctuations decrease with increasing β while magnetic fluctuations increase. B ⊥ fluctuations saturate while parallel (compressional) magnetic fluctuations increase continuously with β. At the highest β values Î δ ||/ δ B ⊥ 2 and δ B/B 1%. The measurements are consistent with the excitation of the Gradient-driven Drift Coupling (GDC). This instability prefers k|| = 0 and grows in finite β plasmas due to density and temperature gradients through the production of parallel magnetic field fluctuations and resulting ⊥ B|| drifts. Comparisons between experimental measurements and theoretical predictions for the GDC will be shown. Direct measurements of electrostatic particle flux have been performed and show a strong reduction with increasing β. No evidence is found (e.g. density profile shape) of enhanced confinement, suggesting that other transport mechanisms are active. Preliminary measurements indicate that electromagnetic transport due to parallel magnetic field fluctuations at first increases with β but is subsequently suppressed at higher β values.

Limiting similarity and functional diversity along environmental gradients

USGS Publications Warehouse

Schwilk, D.W.; Ackerly, D.D.

2005-01-01

Recent developments in community models emphasize the importance of incorporating stochastic processes (e.g. ecological drift) in models of niche-structured community assembly. We constructed a finite, spatially explicit, lottery model to simulate the distribution of species in a one-dimensional landscape with an underlying gradient in environmental conditions. Our framework combines the potential for ecological drift with environmentally-mediated competition for space in a heterogeneous environment. We examined the influence of niche breadth, dispersal distances, community size (total number of individuals) and the breadth of the environmental gradient on levels of species and functional trait diversity (i.e. differences in niche optima). Three novel results emerge from this model: (1) niche differences between adjacent species (e.g. limiting similarity) increase in smaller communities, because of the interaction of competitive effects and finite population sizes; (2) immigration from a regional species pool, stochasticity and niche-assembly generate a bimodal distribution of species residence times ('transient' and 'resident') under a heterogeneous environment; and (3) the magnitude of environmental heterogeneity has a U-shaped effect on diversity, because of shifts in species richness of resident vs. transient species. These predictions illustrate the potential importance of stochastic (although not necessarily neutral) processes in community assembly. ??2005 Blackwell Publishing Ltd/CNRS.

A Motor-Gradient and Clustering Model of the Centripetal Motility of MTOCs in Meiosis I of Mouse Oocytes

PubMed Central

2016-01-01

Asters nucleated by Microtubule (MT) organizing centers (MTOCs) converge on chromosomes during spindle assembly in mouse oocytes undergoing meiosis I. Time-lapse imaging suggests that this centripetal motion is driven by a biased ‘search-and-capture’ mechanism. Here, we develop a model of a random walk in a drift field to test the nature of the bias and the spatio-temporal dynamics of the search process. The model is used to optimize the spatial field of drift in simulations, by comparison to experimental motility statistics. In a second step, this optimized gradient is used to determine the location of immobilized dynein motors and MT polymerization parameters, since these are hypothesized to generate the gradient of forces needed to move MTOCs. We compare these scenarios to self-organized mechanisms by which asters have been hypothesized to find the cell-center- MT pushing at the cell-boundary and clustering motor complexes. By minimizing the error between simulation outputs and experiments, we find a model of “pulling” by a gradient of dynein motors alone can drive the centripetal motility. Interestingly, models of passive MT based “pushing” at the cortex, clustering by cross-linking motors and MT-dynamic instability gradients alone, by themselves do not result in the observed motility. The model predicts the sensitivity of the results to motor density and stall force, but not MTs per aster. A hybrid model combining a chromatin-centered immobilized dynein gradient, diffusible minus-end directed clustering motors and pushing at the cell cortex, is required to comprehensively explain the available data. The model makes experimentally testable predictions of a spatial bias and self-organized mechanisms by which MT asters can find the center of a large cell. PMID:27706163

A Motor-Gradient and Clustering Model of the Centripetal Motility of MTOCs in Meiosis I of Mouse Oocytes.

PubMed

Khetan, Neha; Athale, Chaitanya A

2016-10-01

Asters nucleated by Microtubule (MT) organizing centers (MTOCs) converge on chromosomes during spindle assembly in mouse oocytes undergoing meiosis I. Time-lapse imaging suggests that this centripetal motion is driven by a biased 'search-and-capture' mechanism. Here, we develop a model of a random walk in a drift field to test the nature of the bias and the spatio-temporal dynamics of the search process. The model is used to optimize the spatial field of drift in simulations, by comparison to experimental motility statistics. In a second step, this optimized gradient is used to determine the location of immobilized dynein motors and MT polymerization parameters, since these are hypothesized to generate the gradient of forces needed to move MTOCs. We compare these scenarios to self-organized mechanisms by which asters have been hypothesized to find the cell-center- MT pushing at the cell-boundary and clustering motor complexes. By minimizing the error between simulation outputs and experiments, we find a model of "pulling" by a gradient of dynein motors alone can drive the centripetal motility. Interestingly, models of passive MT based "pushing" at the cortex, clustering by cross-linking motors and MT-dynamic instability gradients alone, by themselves do not result in the observed motility. The model predicts the sensitivity of the results to motor density and stall force, but not MTs per aster. A hybrid model combining a chromatin-centered immobilized dynein gradient, diffusible minus-end directed clustering motors and pushing at the cell cortex, is required to comprehensively explain the available data. The model makes experimentally testable predictions of a spatial bias and self-organized mechanisms by which MT asters can find the center of a large cell.

Understanding the impact of insulating and conducting endplate boundary conditions on turbulence in CSDX through nonlocal simulations

DOE PAGES

Vaezi, P.; Holland, C.; Thakur, S. C.; ...

2017-04-01

The Controlled Shear Decorrelation Experiment (CSDX) linear plasma device provides a unique platform for investigating the underlying physics of self-regulating drift-wave turbulence/zonal flow dynamics. A minimal model of 3D drift-reduced nonlocal cold ion fluid equations which evolves density, vorticity, and electron temperature fluctuations, with proper sheath boundary conditions, is used to simulate dynamics of the turbulence in CSDX and its response to changes in parallel boundary conditions. These simulations are then carried out using the BOUndary Turbulence (BOUT++) framework and use equilibrium electron density and temperature profiles taken from experimental measurements. The results show that density gradient-driven drift-waves are themore » dominant instability in CSDX. However, the choice of insulating or conducting endplate boundary conditions affects the linear growth rates and energy balance of the system due to the absence or addition of Kelvin-Helmholtz modes generated by the sheath-driven equilibrium E × B shear and sheath-driven temperature gradient instability. Moreover, nonlinear simulation results show that the boundary conditions impact the turbulence structure and zonal flow formation, resulting in less broadband (more quasi-coherent) turbulence and weaker zonal flow in conducting boundary condition case. These results are qualitatively consistent with earlier experimental observations.« less

Doubling The Intensity Of An ERL Based Light Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andrew Hutton

2005-05-01

A light source based on an Energy Recovered Linac (ERL) [1] consists of a superconducting linac and a transfer line that includes wigglers and undulators to produce the synchrotron light. The transfer line brings the electron bunches back to the beginning of the linac so that their energy can be recovered when they traverse the linac a second time, {lambda}/2 out of RF phase. There is another interesting condition when the length of the transfer line is (n {+-} 1/4) {lambda}. In this case, the electrons drift through on the zero RF crossing, and make a further pass around themore » transfer line, effectively doubling the circulating current in the wigglers and undulators. On the third pass through the linac, they will be decelerated and their energy recovered. The longitudinal focusing at the zero crossing is a problem, but it can be canceled if the drifting beam sees a positive energy gradient for the first half of the linac and a negative gradient for the second half (or vice versa). This paper presents a proposal to use a double chicane at the center of the linac to provide this focusing inversion for the drifting beam while leaving the accelerating and decelerating beams on crest. [1] G. R. Neil, et al, Phys. Rev. Let. 84, 662 2000« less

A Stokes drift approximation based on the Phillips spectrum

NASA Astrophysics Data System (ADS)

Breivik, Øyvind; Bidlot, Jean-Raymond; Janssen, Peter A. E. M.

2016-04-01

A new approximation to the Stokes drift velocity profile based on the exact solution for the Phillips spectrum is explored. The profile is compared with the monochromatic profile and the recently proposed exponential integral profile. ERA-Interim spectra and spectra from a wave buoy in the central North Sea are used to investigate the behavior of the profile. It is found that the new profile has a much stronger gradient near the surface and lower normalized deviation from the profile computed from the spectra. Based on estimates from two open-ocean locations, an average value has been estimated for a key parameter of the profile. Given this parameter, the profile can be computed from the same two parameters as the monochromatic profile, namely the transport and the surface Stokes drift velocity.

Proceedings of the STRESS Data Review Meeting, 29-30 November 1977

DTIC Science & Technology

1978-06-01

INSULATORS MAGNETOMETER BEACON ANTENNA fe?^ S-BAND ANTENNA- -DC PROBE SENSING ELEMENT PLASMA FREQUENCY PROBE MONOPOLE -GUARD ELECTRODE PLASMA...have demonstrated, using calculational results from MICE and MRHYDE (MHD computer codes), that the gradient-drift instability is the one primarily

Differential effects of gemfibrozil and fenofibrate on reverse cholesterol transport from macrophages to feces in vivo.

PubMed

Rotllan, Noemí; Llaverías, Gemma; Julve, Josep; Jauhiainen, Matti; Calpe-Berdiel, Laura; Hernández, Cristina; Simó, Rafael; Blanco-Vaca, Francisco; Escolà-Gil, Joan Carles

2011-02-01

Gemfibrozil and fenofibrate, two of the fibrates most used in clinical practice, raise HDL cholesterol (HDLc) and are thought to reduce the risk of atherosclerotic cardiovascular disease. These drugs act as PPARα agonists and upregulate the expression of genes crucial in reverse cholesterol transport (RCT). In the present study, we determined the effects of these two fibrates on RCT from macrophages to feces in vivo in human apoA-I transgenic (hApoA-ITg) mice. [(3)H]cholesterol-labeled mouse macrophages were injected intraperitoneally into hApoA-ITg mice treated with intragastric doses of fenofibrate, gemfibrozil or a vehicle solution for 17days, and radioactivity was determined in plasma, liver and feces. Fenofibrate, but not gemfibrozil, enhanced [(3)H]cholesterol flux to plasma and feces of female hApoA-ITg mice. Fenofibrate significantly increased plasma HDLc, HDL phospholipids, hApoA-I levels and phospholipid transfer protein activity, whereas these parameters were not altered by gemfibrozil treatment. Unlike gemfibrozil, fenofibrate also induced the generation of larger HDL particles, which were more enriched in cholesteryl esters, together with higher potential to generate preβ-HDL formation and caused a significant increase in [(3)H]cholesterol efflux to plasma. Our findings demonstrate that fenofibrate promotes RCT from macrophages to feces in vivo and, thus, highlight a differential action of this fibrate on HDL. Copyright © 2010 Elsevier B.V. All rights reserved.

Effect of external plasma flows on the interaction between turbulence and convective cells

NASA Astrophysics Data System (ADS)

Uzawa, Ken; Li, Jiquan

2005-10-01

It is widely recognized that large scale structures, such as zonal flows, streamers and also long wavelength Kelvin-Helmholtz modes are nonlinearly generated from maternal turbulence through modulational instability process and play a crucial role in regulating the transport in tokamaks. In order to control the transport, it is desirable to control such structures and/or modulational process. One of control parameters may be mean flow which intrinsically exists in tokamak plasmas. Besides the direct influence on the transport through vortex decorrelation, the mean flow may indirectly change the zonal flow generation by acting on the modulational process itself. In this work, we theoretically investigate the characteristics of zonal flow generation due to the electron temperature gradient (ETG) turbulence in the presence of long wavelength ITG driven zonal flow. This was done by extending our previous modulational analyses[1]. We have numerically analyzed the influence of mean flow on zonal flow generation. The main result is that the zonal flow generation is suppressed by the presence of the mean flow. [1]J. Li, Y. Kishimoto, Physics of Plasmas, 9, 1241 (2002)

The Role of Plasma Rotation in C-Mod Internal Transport Barriers

NASA Astrophysics Data System (ADS)

Fiore, C. L.; Ernst, D. R.; Rice, J. E.; Podpaly, Y.; Reinke, M. L.; Greenwald, M. J.; Hughes, J. W.; Ma, Y.; Bespamyatnov, I. O.; Rowan, W. L.

2010-11-01

ITBs in Alcator C-Mod featuring highly peaked density and pressure profiles are induced by injecting ICRF power with the second harmonic of the resonant frequency for minority hydrogen off-axis at the plasma half radius. These ITBs are formed in the absence of particle or momentum injection, and with monotonic q profiles with qmin < 1. In C-Mod a strong co-current toroidal rotation, peaked on axis, develops after the transition to H-mode. If an ITB forms, this rotation decreases in the center of the plasma and forms a well, and often reverses direction in the core. This indicates that there is a strong EXB shearing rate in the region where the foot in the ITB density profile is observed. Preliminary gyrokinetic analyses indicate that this shearing rate is comparable to the ion temperature gradient mode (ITG) growth rate at this location and may be responsible for stabilizing the turbulence. Gyrokinetic analyses of recent experimental data obtained from a complete scan of the ICRF resonance position across the entire C-Mod plasma will be presented.

The role of turbulent suppression in the triggering ITBs on C-Mod

NASA Astrophysics Data System (ADS)

Zhurovich, K.; Fiore, C. L.; Ernst, D. R.; Bonoli, P. T.; Greenwald, M. J.; Hubbard, A. E.; Hughes, J. W.; Marmar, E. S.; Mikkelsen, D. R.; Phillips, P.; Rice, J. E.

2007-11-01

Internal transport barriers can be routinely produced in C-Mod steady EDA H-mode plasmas by applying ICRF at |r/a|>= 0.5. Access to the off-axis ICRF heated ITBs may be understood within the paradigm of marginal stability. Analysis of the Te profiles shows a decrease of R/LTe in the ITB region as the RF resonance is moved off axis. Ti profiles broaden as the ICRF power deposition changes from on-axis to off-axis. TRANSP calculations of the Ti profiles support this trend. Linear GS2 calculations do not reveal any difference in ETG growth rate profiles for ITB vs. non-ITB discharges. However, they do show that the region of stability to ITG modes widens as the ICRF resonance is moved outward. Non-linear simulations show that the outward turbulent particle flux exceeds the Ware pinch by factor of 2 in the outer plasma region. Reducing the temperature gradient significantly decreases the diffusive flux and allows the Ware pinch to peak the density profile. Details of these experiments and simulations will be presented.

Ohmic ITBs in Alcator C-Mod

NASA Astrophysics Data System (ADS)

Fiore, C. L.; Rowan, W. L.; Dominguez, A.; Hubbard, A. E.; Ince-Cushman, A.; Greenwald, M. J.; Lin, L.; Marmar, E. S.; Reinke, M.; Rice, J. E.; Zhurovich, K.

2007-11-01

Internal transport barrier plasmas can arise spontaneously in ohmic Alcator C-Mod plasmas where an EDA H-mode has been developed by magnetic field ramping. These ohmic ITBs share the hallmarks of ITBs created with off-axis ICRF injection in that they have highly peaked density and pressure profiles and the peaking can be suppressed by on-axis ICRF. There is a reduction of particle and thermal flux in the barrier region which then allows the neoclassical pinch to peak the central density. Recent work on ITB onset conditions [1] which was motivated by turbulence studies [2] points to the broadening of the Ti profile with off-axis ICRF acting to reduce the ion temperature gradient. This suppresses ITG instability driven particle fluxes, which is thought to be the primary mechanism for ITB formation. The object of this study is to examine the characteristics of ohmic ITBs to find whether the stability of plasmas and the plasma parameters support the onset model. [1]K. Zhurovich, et al., To be published in Nuclear Fusion [2] D. R. Ernst, et al., Phys. Plasmas 11, 2637 (2004)

Recurrent noise-induced phase singularities in drifting patterns.

PubMed

Clerc, M G; Coulibaly, S; del Campo, F; Garcia-Nustes, M A; Louvergneaux, E; Wilson, M

2015-11-01

We show that the key ingredients for creating recurrent traveling spatial phase defects in drifting patterns are a noise-sustained structure regime together with the vicinity of a phase transition, that is, a spatial region where the control parameter lies close to the threshold for pattern formation. They both generate specific favorable initial conditions for local spatial gradients, phase, and/or amplitude. Predictions from the stochastic convective Ginzburg-Landau equation with real coefficients agree quite well with experiments carried out on a Kerr medium submitted to shifted optical feedback that evidence noise-induced traveling phase slips and vortex phase-singularities.

The role of merged interaction regions and drafts in the heliospheric modulation of cosmic rays beyond 20 AU - A computer simulation

NASA Technical Reports Server (NTRS)

Potgieter, M. S.; Le Roux, J. A.; Burlaga, L. F.; Mcdonald, F. B.

1993-01-01

Voyager 2 magnetic field measurements are used to simulate merged interaction and rarefaction regions (MIRs and RRs) for 1985-1989 via numerical solutions of the time-dependent, axially symmetric transport equation of cosmic rays in the heliosphere, together with the concurrent use of the wavy neutral sheet as a time-dependent drift parameter. This drift approach was found to be more successful, because it was able to reproduce the intensity levels, the factor modulation, and latitudinal gradients for 1 GeV protons at 23 AU.

Self-organization and self-limitation in high power impulse magnetron sputtering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anders, Andre

The plasma over the racetrack in high power impulse magnetron sputtering develops in traveling ionization zones. Power densities can locally reach 10{sup 9} W/m{sup 2}, which is much higher than usually reported. Ionization zones move because ions are 'evacuated' by the electric field, exposing neutrals to magnetically confined, drifting electrons. Drifting secondary electrons amplify ionization of the same ionization zone where the primary ions came from, while sputtered and outgassing atoms are supplied to the following zone(s). Strong density gradients parallel to the target disrupt electron confinement: a negative feedback mechanism that stabilizes ionization runaway.

Atomic physics effects on tokamak edge drift-tearing modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hahm, T.S.

1993-03-01

The effects of ionization and charge exchange on the linear stability of drift-tearing modes are analytically investigated. In particular, the linear instability threshold {Delta}{sup Th}, produced by ion sound wave coupling is modified. In the strongly collisional regime, the ionization breaks up the near cancellation of the perturbed electric field and the pressure gradient along the magnetic field, and increases the threshold. In the semi-collisional regime, both ionization and charge exchange act as drag on the ion parallel velocity, and consequently decrease the threshold by reducing the effectiveness of ion sound wave propagation.

Atomic physics effects on tokamak edge drift-tearing modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hahm, T.S.

1993-03-01

The effects of ionization and charge exchange on the linear stability of drift-tearing modes are analytically investigated. In particular, the linear instability threshold [Delta][sup Th], produced by ion sound wave coupling is modified. In the strongly collisional regime, the ionization breaks up the near cancellation of the perturbed electric field and the pressure gradient along the magnetic field, and increases the threshold. In the semi-collisional regime, both ionization and charge exchange act as drag on the ion parallel velocity, and consequently decrease the threshold by reducing the effectiveness of ion sound wave propagation.

Electrical torques on the electrostatic gyro in the gyro relativity experiment

NASA Technical Reports Server (NTRS)

Eby, P.; Darbo, W.

1980-01-01

A comprehensive discussion and calculation of electrical torques on an electrostatic gyro as they relate to the gyroscope experiment to test general relativity is presented. Drift rates were computed for some typical state of the art rotors, including higher harmonics in the rotor shape. The effect of orbital averaging of gravity gradient forces, roll averaging of torques, and the effect of spin averaging on the effective shape of the rotor were considered. The electrical torques are reduced sufficiently in a low g environment to permit a measurement of the relativistic drifts predicted by general relativity.

Analysis and forecast experiments incorporating satellite soundings and cloud and water vapor drift wind information

NASA Technical Reports Server (NTRS)

Goodman, Brian M.; Diak, George R.; Mills, Graham A.

1986-01-01

A system for assimilating conventional meteorological data and satellite-derived data in order to produce four-dimensional gridded data sets of the primary atmospheric variables used for updating limited area forecast models is described. The basic principles of a data assimilation scheme as proposed by Lorenc (1984) are discussed. The design of the system and its incremental assimilation cycles are schematically presented. The assimilation system was tested using radiosonde, buoy, VAS temperature, dew point, gradient wind data, cloud drift, and water vapor motion data. The rms vector errors for the data are analyzed.

Van Allen Probes Observations of Radiation Belt Acceleration associated with Solar Wind Shocks

NASA Astrophysics Data System (ADS)

Foster, J. C.; Wygant, J. R.; Baker, D. N.

2017-12-01

During a moderate solar wind shock event on 8 October 2013 the twin Van Allen Probes spacecraft observed the shock-induced electric field in the dayside magnetosphere and the response of the electron populations across a broad range of energies. Whereas other mechanisms populating the radiation belts close to Earth (L 3-5) take place on time scales of months (diffusion) or hours (storm and substorm effects), acceleration during shock events occurs on a much faster ( 1 minute) time scale. During this event the dayside equatorial magnetosphere experienced a strong dusk-dawn/azimuthal component of the electric field of 1 min duration. This shock-induced pulse accelerates radiation belt electrons for the length of time they are exposed to it creating "quasi-periodic pulse-like" enhancements in the relativistic (2 - 6 MeV) electron flux. Electron acceleration occurs on a time scale that is a fraction of their orbital drift period around the Earth. Those electrons whose drift velocity closely matches the azimuthal phase velocity of the shock-induced pulse stay in the accelerating wave as it propagates tailward and receive the largest increase in energy. Relativistic electron gradient drift velocities are energy-dependent, selecting a preferred range of energies (3-4 MeV) for the strongest enhancement. The time scale for shock acceleration is short with respect to the electron drift period ( 5 min), but long with respect to bounce and gyro periodicities. As a result, the third invariant is broken and the affected electron populations are displaced earthward experiencing an adiabatic energy gain. At radial distances tailward of the peak in phase space density, the impulsive inward displacement of the electron population produces a decrease in electron flux and a sequence of gradient drifting "negative holes".Dual spacecraft coverage of the 8 October 2013 event provided a before/after time sequence documenting shock effects.

Formation of the terrestrial planets in the solar system around 1 au via radial concentration of planetesimals

NASA Astrophysics Data System (ADS)

Ogihara, Masahiro; Kokubo, Eiichiro; Suzuki, Takeru K.; Morbidelli, Alessandro

2018-05-01

Context. No planets exist inside the orbit of Mercury and the terrestrial planets of the solar system exhibit a localized configuration. According to thermal structure calculation of protoplanetary disks, a silicate condensation line ( 1300 K) is located around 0.1 au from the Sun except for the early phase of disk evolution, and planetesimals could have formed inside the orbit of Mercury. A recent study of disk evolution that includes magnetically driven disk winds showed that the gas disk obtains a positive surface density slope inside 1 au from the central star. In a region with positive midplane pressure gradient, planetesimals undergo outward radial drift. Aims: We investigate the radial drift of planetesimals and type I migration of planetary embryos in a disk that viscously evolves with magnetically driven disk winds. We show a case in which no planets remain in the close-in region. Methods: Radial drifts of planetesimals are simulated using a recent disk evolution model that includes effects of disk winds. The late stage of planet formation is also examined by performing N-body simulations of planetary embryos. Results: We demonstrate that in the middle stage of disk evolution, planetesimals can undergo convergent radial drift in a magnetorotational instability (MRI)-inactive disk, in which the pressure maximum is created, and accumulate in a narrow ring-like region with an inner edge at 0.7 au from the Sun. We also show that planetary embryos that may grow from the narrow planetesimal ring do not exhibit significant type I migration in the late stage of disk evolution. Conclusions: The origin of the localized configuration of the terrestrial planets of the solar system, in particular the deficit of close-in planets, can be explained by the convergent radial drift of planetesimals in disks with a positive pressure gradient in the close-in region.

Understanding rotation profile structures in ECH-heated plasmas using nonlinear gyrokinetic simulations

NASA Astrophysics Data System (ADS)

Wang, Weixing; Brian, B.; Ethier, S.; Chen, J.; Startsev, E.; Diamond, P. H.; Lu, Z.

2015-11-01

A non-diffusive momentum flux connecting edge momentum sources/sinks and core plasma flow is required to establish the off-axis peaked ion rotation profile typically observed in ECH-heated DIII-D plasmas without explicit external momentum input. The understanding of the formation of such profile structures provides an outstanding opportunity to test the physics of turbulence driving intrinsic rotation, and validate first-principles-based gyrokinetic simulation models. Nonlinear, global gyrokinetic simulations of DIII-D ECH plasmas indicate a substantial ITG fluctuation-induced residual stress generated around the region of peaked toroidal rotation, along with a diffusive momentum flux. The residual stress profile shows an anti-gradient, dipole structure, which is critical for accounting for the formation of the peaked rotation profile. It is showed that both turbulence intensity gradient and zonal flow ExB shear contribute to the generation of k// asymmetry needed for residual stress generation. By balancing the simulated residual stress and the momentum diffusion, a rotation profile is calculated. In general, the radial structure of core rotation profile is largely determined by the residual stress profile, while the amplitude of core rotation depends on the edge toroidal rotation velocity, which is determined by edge physics and used as a boundary condition in our model. The calculated core rotation profile is consistent with the experimental measurements. Also discussed is the modification of turbulence-generated Reynolds stress on poloidal rotation in those plasmas. Work supported by U.S. DOE Contract DE-AC02-09-CH11466.

Theory and Simulation of Rotational Shear Stabilization of Turbulence

NASA Astrophysics Data System (ADS)

Waltz, R. E.

1997-11-01

Stabilization of turbulence in tokamaks by E×B rotational shear is now thought to be a key mechanism leading to both L/H-edge and core transport barriers. Numerical simulations of ion temperature gradient (ITG) mode transport with gyrofluid flux tude codes first lead to the approximate rule that the critical E×B rotational shear rate γE = r/q partial (q v_E×B/r)/partialr ≈ γ_max the maximum of ballooning mode growth rates γ0 in the absence of the E×B shear.(R.E. Waltz, G.D. Kerbel, J Milovich, and G.W. Hammett, Phys. Plasmas 2) (1995) 2408; Phys. Plasmas 1 (1994) 2229. The present work revisits the (ρ arrow 0) flux tube simulations reformulated terms in of Floquet ballooning modes which convect in the ballooning mode angle θ0 arrow θ0 + γ_E/hats t. This formulation avoids linearly unstable and spurious ``box modes" which arise from discretizing in θ0 and illustrates the true nonlinear nature of the stabilization in toroidal geometry. The eigenmodes can be linearly stable(J.W. Connor, J.B. Taylor, and H.R Wilson, Phys. Rev. Lett. 70) (1993) 1803. at vanishingly small γE when θ_0-averaged γ_0(θ_0) <= 0, yet Floquet mode convective amplification with nonlinear coupling allows turbulence to persists unless γE ≈ γ_max. The rule seems to hold at vanishing magnetic shear hats. Going to finite ρ^* with diamagnetic velocities comparable to v_E× B, likely requires the total mode phase velocity shear (not just the v_E× B Doppler part) r/q partial (q v_mode/r)/partial r >= γ_max. ``Profile curvature" (x^2 profile variations in γ_0) works against stabilization from ``profile shear" (x-variation). From studies of global eigenmodes of the ``ballooning-Schrödinger equation,"(R.L. Dewar, Plasma Phys. and Control. Fusion 39) (1997) 437. the profile curvature is generally not important if ρ^* is typically small. Further studies of profile stabilization use the 2d full radius ITG code.(X. Garbet and R.E. Waltz, Phys. of Plasmas 3) (1996) 1898.

A multi-instrument case study of high-latitude ionospheric GNSS scintillation due to drifting plasma irregularities

NASA Astrophysics Data System (ADS)

van der Meeren, C.; Oksavik, K.; Moen, J. I.; Romano, V.

2013-12-01

For this study, GPS receiver scintillation and Total Electron Content (TEC) data from high-latitude locations on Svalbard have been combined with several other data sets, including the EISCAT Svalbard Radar (ESR) and allsky cameras, to perform a multi-instrument case study of high-latitude GPS ionospheric scintillations in relation to drifting plasma irregularities at night over Svalbard on 31 October 2011. Scintillations are rapid amplitude and phase fluctuations of electromagnetic signals. GNSS-based systems may be disturbed by ionospheric plasma irregularities and structures such as plasma patches (areas of enhanced electron density in the polar cap) and plasma gradients. When the GNSS radio signals propagate through such areas, in particular gradients, the signals experience scintillations that at best increases positioning errors and at worst may break the receiver's signal lock, potentially resulting in the GNSS receiver losing track of its position. Due to the importance of many GNSS applications, it is desirable to study the scintillation environment to understand the limitations of the GNSS systems. We find scintillation mainly localised to plasma gradients, with predominantly phase scintillation at the leading edge of patches and both phase and amplitude scintillation at the trailing edge. A single edge may also contain different scintillation types at different locations.

LASER APPLICATIONS AND OTHER TOPICS IN QUANTUM ELECTRONICS: Laser acceleration of neutrons (physical foundations)

NASA Astrophysics Data System (ADS)

Rivlin, Lev A.

2010-08-01

The concept of neutron acceleration in a gradient magnetic field of a 'drifting' standing electromagnetic wave is presented. The promising fields of application of an accelerated directional beam of ultracold neurons, in particular, remote initiation of nuclear reactions, are suggested.

Analytic non-Maxwellian electron velocity distribution function in a Hall discharge plasma

NASA Astrophysics Data System (ADS)

Shagayda, Andrey; Tarasov, Alexey

2017-10-01

The electron velocity distribution function in the low-pressure discharges with the crossed electric and magnetic fields, which occur in magnetrons, plasma accelerators, and Hall thrusters with a closed electron drift, is not Maxwellian. A deviation from equilibrium is caused by a large electron mean free path relative to the Larmor radius and the size of the discharge channel. In this study, we derived in the relaxation approximation the analytical expression of the electron velocity distribution function in a weakly ionized Lorentz plasma with the crossed electric and magnetic fields in the presence of the electron density and temperature gradients in the direction of the electric field. The solution was obtained in the stationary approximation far from boundary surfaces, when diffusion and mobility are determined by the classical effective collision frequency of electrons with ions and atoms. The moments of the distribution function including the average velocity, the stress tensor, and the heat flux were calculated and compared with the classical hydrodynamic expressions. It was shown that a kinetic correction to the drift velocity stems from a contribution of the off-diagonal component of the stress tensor. This correction becomes essential if the drift velocity in the crossed electric and magnetic fields would be comparable to the thermal velocity of electrons. The electron temperature has three different components at a nonzero effective collision frequency and two different components in the limit when the collision frequency tends to zero. It is shown that, in the presence of ionization collisions, the components of the heat flux have additives that are not related to the temperature gradient, and arise because of the electron drift.

Characterization of a Dynamic String Method for the Construction of Transition Pathways in Molecular Reactions

PubMed Central

Johnson, Margaret E.; Hummer, Gerhard

2012-01-01

We explore the theoretical foundation of different string methods used to find dominant reaction pathways in high-dimensional configuration spaces. Pathways are assessed by the amount of reactive flux they carry and by their orientation relative to the committor function. By examining the effects of transforming between different collective coordinates that span the same underlying space, we unmask artificial coordinate dependences in strings optimized to follow the free energy gradient. In contrast, strings optimized to follow the drift vector produce reaction pathways that are significantly less sensitive to reparameterizations of the collective coordinates. The differences in these paths arise because the drift vector depends on both the free energy gradient and the diffusion tensor of the coarse collective variables. Anisotropy and position dependence of diffusion tensors arise commonly in spaces of coarse variables, whose generally slow dynamics are obtained by nonlinear projections of the strongly coupled atomic motions. We show here that transition paths constructed to account for dynamics by following the drift vector will (to a close approximation) carry the maximum reactive flux both in systems with isotropic position dependent diffusion, and in systems with constant but anisotropic diffusion. We derive a simple method for calculating the committor function along paths that follow the reactive flux. Lastly, we provide guidance for the practical implementation of the dynamic string method. PMID:22616575

Limitations of quasilinear transport theory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balescu, R.

1992-01-01

The anomalous fluxes are evaluated in the simplest possible geometric situation: drift waves in a shearless slab geometry, in the presence of density and temperature gradients. It is shown that, within the strict quasilinear framework, the linear transport equations relating the fluxes to the thermodynamic forces have serious limitations. Such a linear relation does not even exist for the ion energy flux. For all the fluxes, the first correction'' has a singularity whose location depends on the relative value of the density gradient and of the ion temperature gradient: its existence seriously restricts the domain of validity of the quasilinearmore » transport theory. The semiempirical quasilinear'' formulas used in the comparisons with experiments are also discussed.« less

Decreased regional activity of default-mode network in unaffected siblings of schizophrenia patients at rest.

PubMed

Guo, Wenbin; Su, Qinji; Yao, Dapeng; Jiang, Jiajing; Zhang, Jian; Zhang, Zhikun; Yu, Liuyu; Zhai, Jinguo; Xiao, Changqing

2014-04-01

Dysconnectivity hypothesis posits that abnormal resting-state connectivity within the default-mode network (DMN) acts as a key role in schizophrenia. However, little is known about the regional alterations of the DMN in unaffected siblings of schizophrenia patients. Unaffected siblings have a unique advantage in neuroimaging studies independent of clinical and treatment issues that complicate studies on patients themselves. In the present study, we used fractional amplitude of low-frequency fluctuation (fALFF) to investigate regional alterations of the DMN in unaffected siblings of schizophrenia patients at rest. Forty-six unaffected siblings of schizophrenia patients and 50 age-, sex-, and education-matched healthy controls underwent a resting-state functional magnetic resonance imaging (fMRI). The fALFF and independent component analysis (ICA) approaches were used to analyze the data. The unaffected siblings of schizophrenia patients had lower fALFF than the controls in the left inferior temporal gyrus (ITG). No significantly increased fALFF was found in any brain regions in the siblings compared to that in the controls. Further receiver operating characteristic (ROC) curve and support vector machine (SVM) analyses showed that the fALFF values of the left ITG could be utilized to separate the siblings from the controls. Our results first suggest that there is decreased regional activity of the DMN in unaffected siblings of schizophrenia patients, and provide a clue that decreased regional activity of the left ITG could be applied as a candidate biomarker to identify the siblings from the controls. Copyright © 2014 Elsevier B.V. and ECNP. All rights reserved.

Intratympanic treatment of intractable unilateral Meniere disease: gentamicin or dexamethasone? A randomized controlled trial.

PubMed

Casani, Augusto Pietro; Piaggi, Paolo; Cerchiai, Niccolò; Seccia, Veronica; Franceschini, Stefano Sellari; Dallan, Iacopo

2012-03-01

To determine the efficacy and safety of low-dose intratympanic gentamicin (ITG) compared with intratympanic dexamethasone (ITD) in patients with intractable unilateral Ménière disease (MD). Open prospective randomized controlled study. Tertiary referral center. Sixty patients affected by definite unilateral MD were enrolled between January 1, 2007, and June 30, 2008. Thirty-two patients were treated with a buffered gentamicin solution injected in the middle ear (maximum of 2 injections); 28 patients were treated with ITD (4 mg/mL, 3 injections at intervals of 1 every 3 days). Mean outcome measurements consisted of control of vertigo attacks, pure tone average (PTA), speech discrimination score, functional disability score, and statistical analysis using repeated measures analysis of variance. In the ITG group at 2-year follow-up, complete control of vertigo (class A) was achieved in 26 patients (81%) and substantial control of vertigo (class B) in 4 patients (12.5%). In the ITD group, class A was achieved in 12 (43%), and class B in 5 (18%) patients. In the gentamicin group, 4 patients showed a reduction in PTA of ≥10 dB. In the ITD group, PTA was unchanged or slightly improved in 16 patients (belonging to class A-B) and worse in 12. Low-dose ITG achieved better outcome than ITD in the control of vertigo attacks in patients suffering from unilateral MD, with a very low incidence of hearing deterioration. ITD offers poorer vertigo control rate, and hearing preservation is achieved only in cases with no vertigo recurrences.

Estimating IMU heading error from SAR images.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doerry, Armin Walter

Angular orientation errors of the real antenna for Synthetic Aperture Radar (SAR) will manifest as undesired illumination gradients in SAR images. These gradients can be measured, and the pointing error can be calculated. This can be done for single images, but done more robustly using multi-image methods. Several methods are provided in this report. The pointing error can then be fed back to the navigation Kalman filter to correct for problematic heading (yaw) error drift. This can mitigate the need for uncomfortable and undesired IMU alignment maneuvers such as S-turns.

Estuarine density fronts and their effect on oil slicks

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator); Polis, D. F.; Davis, G. R.

1976-01-01

The author has identified the following significant results. Estuarine fronts represent regions of extremely high gradient or discontinuity in various parameters of physical interest, the most important being the water velocity and density fields. Aircraft and boats were combined to study the behavior of different types of fronts in Delaware Bay and their effect on pollutants in order to provide a basis for improving an oil drift and spreading model. Imagery from the LANDSAT satellites provided the most effective means of determining the location and extent of frontal systems over all portions of the tidal cycle. This data is being used to modify the oil drift and spreading model.

Toroidal momentum pinch velocity due to the coriolis drift effect on small scale instabilities in a toroidal plasma.

PubMed

Peeters, A G; Angioni, C; Strintzi, D

2007-06-29

In this Letter, the influence of the "Coriolis drift" on small scale instabilities in toroidal plasmas is shown to generate a toroidal momentum pinch velocity. Such a pinch results because the Coriolis drift generates a coupling between the density and temperature perturbations on the one hand and the perturbed parallel flow velocity on the other. A simple fluid model is used to highlight the physics mechanism and gyro-kinetic calculations are performed to accurately assess the magnitude of the pinch. The derived pinch velocity leads to a radial gradient of the toroidal velocity profile even in the absence of a torque on the plasma and is predicted to generate a peaking of the toroidal velocity profile similar to the peaking of the density profile. Finally, the pinch also affects the interpretation of current experiments.

Toroidal Momentum Pinch Velocity due to the Coriolis Drift Effect on Small Scale Instabilities in a Toroidal Plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peeters, A. G.; Angioni, C.; Strintzi, D.

In this Letter, the influence of the ''Coriolis drift'' on small scale instabilities in toroidal plasmas is shown to generate a toroidal momentum pinch velocity. Such a pinch results because the Coriolis drift generates a coupling between the density and temperature perturbations on the one hand and the perturbed parallel flow velocity on the other. A simple fluid model is used to highlight the physics mechanism and gyro-kinetic calculations are performed to accurately assess the magnitude of the pinch. The derived pinch velocity leads to a radial gradient of the toroidal velocity profile even in the absence of a torquemore » on the plasma and is predicted to generate a peaking of the toroidal velocity profile similar to the peaking of the density profile. Finally, the pinch also affects the interpretation of current experiment000.« less

Fishbone Oscillations in the Experimental Advanced Superconductivity Tokamak

NASA Astrophysics Data System (ADS)

Xu, Li-Qing; Hu, Li-Qun; Yuan, Yi; Li, Ying-Ying; Zhong, Guo-Qiang; Liu, Hai-Qing; Chen, Kai-Yun; Shi, Tong-Hui; Duan, Yan-Min

2018-03-01

A fishbone oscillation was observed in the neutral beam injection plasma at Experimental Advanced Superconductivity Tokamak (EAST). This m = 1/n = 1 ( m, n: poloidal, toroidal mode numbers, respectively) typical internal kink mode travels in the ion-diamagnetism direction in the poloidal section with a rotation speed close to the ion diamagnetic drift frequency. A high thermal plasma beta and high amounts of energetic ions are necessary for the mode to develop. Fishbone oscillations can expel heavy impurities in the core, which favors sustaining a high-performance plasma. The born frequency of the fishbone oscillation is the ion diamagnetic drift frequency and the chirping down of the frequency during the initial growth phase is the result of a drop in iondiamagnetic drift frequency. The excitation energy is thought to be due to the thermal plasma pressure gradient; however, the development of a fishbone oscillation is related to energetic ions.

Turbulent Transport of Fast Ions in the Large Plasma Device (LAPD)

NASA Astrophysics Data System (ADS)

Zhou, Shu; Heidbrink, William; McWilliams, Roger; Boehmer, Heinrich; Carter, Troy; Popovich, Pavel; Tripathi, Shreekrishna; Vincena, Steve; Jenko, Frank

2010-11-01

Due to gyroradius averaging and drift-orbit averaging, the transport of fast ions by microturbulence is often smaller than for thermal ions. In this experiment, Strong drift wave turbulence is observed in LAPD on gradients produced by a plate obstacle. Energetic lithium ions orbit through the turbulent region. Scans with a collimated analyzer and with probes give detailed profiles of the fast ion spatial distribution and of the fluctuating fields. The fast-ion transport decreases rapidly with increasing fast-ion gyroradius. Unlike the diffusive transport caused by Coulomb collisions, in this case the turbulent transport is non-diffusive. Analysis and simulation suggest that the fast ions interact ballistically with stationary two-dimensional electrostatic turbulence. The energy dependence of the transport is well explained by gyro-averaging theory. In new experiments, different sources and obstacles alter the drift-wave turbulence to modify the nature of the transport.

Gyrokinetic particle simulations of the effects of compressional magnetic perturbations on drift-Alfvenic instabilities in tokamaks

DOE PAGES

Dong, Ge; Bao, Jian; Bhattacharjee, Amitava; ...

2017-08-10

The compressional component of magnetic perturbation δB- || to can play an important role in drift-Alfvenic instabilities in tokamaks, especially as the plasma β increases (β is the ratio of kinetic pressure to magnetic pressure). In this work, we have formulated a gyrokinetic particle simulation model incorporating δB- ||, and verified the model in kinetic Alfven wave simulations using the Gyrokinetic Toroidal Code in slab geometry. Simulations of drift-Alfvenic instabilities in tokamak geometry shows that the kinetic ballooning mode (KBM) growth rate decreases more than 20% when δB- || is neglected for β e = 0.02, and that δB- ||more » to has stabilizing effects on the ion temperature gradient instability, but negligible effects on the collisionless trapped electron mode. Lastly, the KBM growth rate decreases about 15% when equilibrium current is neglected.« less

Changing patterns in coastal cutthroat trout (Oncorhynchus clarki clarki) diet and prey in a gradient of deciduous canopies

USGS Publications Warehouse

Romero, N.; Gresswell, R.E.; Li, J.L.

2005-01-01

We examined the influence of riparian vegetation patterns on coastal cutthroat trout Oncorhynchus clarki clarki diet and prey from the summer of 2001 through the spring of 2002. Benthic and drifting invertebrates, allochthonous prey, and fish diet were collected from deciduous, conifer, and mixed sections of three Oregon coastal watersheds. The nine sites were best characterized as a continuum of deciduous cover, and shrub cover and proportion of deciduous canopy were positively correlated (r = 0.74). Most sources of prey (benthic invertebrate biomass, allochthonous invertebrate inputs, aquatic and total invertebrate drift) and aquatic prey ingested by coastal cutthroat trout were greater where shrub cover was more abundant. Only aquatic drift, total invertebrate drift, and allochthonous invertebrates were positively correlated with deciduous vegetation. Compared with coniferous sites, allochthonous invertebrates under deciduous and mixed canopies were almost 30% more abundant. Stream discharge likely influenced seasonal fluxes of aquatic invertebrate biomass in the benthos and drift. Aquatic insects dominated gut contents during this study; however, terrestrial prey were most common in the diet during the summer and fall. In the Pacific northwest, systematic removal of deciduous riparian vegetation to promote conifers may have unintended consequences on food resources of coastal cutthroat trout and aquatic food web interactions. ?? 2005 NRC.

The character of drift spreading of artificial plasma clouds in the middle-latitude ionosphere

NASA Astrophysics Data System (ADS)

Blaunstein, N.

1996-02-01

Nonlinear equations describing the evolution of plasma clouds with real initial sizes, along and across the geomagnetic field B, which drift in the ionosphere in the presence of an ambient electric field and a neutral wind have been solved and analysed. An ionospheric model close to the real conditions of the middle-latitude ionosphere is introduced, taking into account the altitude dependence of the transport coefficients and background ionospheric plasma. The striation of the initial plasma cloud into a cluster of plasmoids, stretched along the field B, is obtained. The process of dispersive splitting of the initial plasma cloud can be understood in terms of gradient drift instability (GDI) as a most probable striation mechanism. The dependence of the characteristic time of dispersive splitting on the value of the ambient electric field, the initial plasma disturbance in the cloud and its initial sizes was investigated. The stretching criterion, necessary for the plasma cloud's striation is obtained. The possibility of the drift stabilization effect arising from azimuthal drift velocity shear, obtained by Drake et al. [1988], is examined for various parameters of the barium cloud and the background ionospheric conditions. A comparison with experimental data on the evolution of barium clouds in rocket experiments at the height of the lower ionosphere is made.

Attraction and repulsion of spiral waves by inhomogeneity of conduction anisotropy--a model of spiral wave interaction with electrical remodeling of heart tissue.

PubMed

Kuklik, Pawel; Sanders, Prashanthan; Szumowski, Lukasz; Żebrowski, Jan J

2013-01-01

Various forms of heart disease are associated with remodeling of the heart muscle, which results in a perturbation of cell-to-cell electrical coupling. These perturbations may alter the trajectory of spiral wave drift in the heart muscle. We investigate the effect of spatially extended inhomogeneity of transverse cell coupling on the spiral wave trajectory using a simple active media model. The spiral wave was either attracted or repelled from the center of inhomogeneity as a function of cell excitability and gradient of the cell coupling. High levels of excitability resulted in an attraction of the wave to the center of inhomogeneity, whereas low levels resulted in an escape and termination of the spiral wave. The spiral wave drift velocity was related to the gradient of the coupling and the initial position of the wave. In a diseased heart, a region of altered transverse coupling corresponds with local gap junction remodeling that may be responsible for stabilization-destabilization of spiral waves and hence reflect potentially important targets in the treatment of heart arrhythmias.

Slanting Design: A Pilot Program

DTIC Science & Technology

1985-10-01

adequate financing and proper planning and forethought. itG’ven the significant number of variables over which FEMA has no control , however, it would...Eskilstuna SWEDEN Ministero dell Interno Direzione Generale della Protezione Civile 00100 Rome ITALY Directeur de la Protection: Civile Ministere de

Anomalous cosmic ray oxygen gradients throughout the heliosphere

NASA Technical Reports Server (NTRS)

Cummings, A. C.; Mewaldt, R. A.; Blake, J. B.; Cummings, J. R.; Franz, M.; Hovestadt, D.; Klecker, B.; Mason, G. M.; Mazur, J. E.; Stone, E. C.

1995-01-01

We have used data from the Solar, Anomalous, and Magnetospheric Particle Explorer (SAMPEX), Ulysses, Voyager 1, Voyager 2, and Pioneer 10 spacecraft to determine the radial and latitudinal gradients of anomalous cosmic ray oxygen at 10 MeV/nuc during the last half of 1993. These five spacecraft cover radial distances from 1 AU (SAMPEX) to 58 AU (P10) and latitudes to 41 deg S (Ulysses) and 32 deg N (V1). We find that the radial gradient is a decreasing function of radial distance, approximately r(exp -n), with n = 1.7 +/- 0.7. The large-scale radial gradient between the inner and outer heliosphere is much smaller than it was during the last solar minimum period in approximately 1987. The latitudinal gradient is small and positive, 1.3 +/- 0.4 %/deg, as opposed to the large and negative latitudinal gradients found during 1987, but similar to the small positive latitudinal gradient measured during 1976 for anomalous cosmic ray helium. These observations confirm that effects of curvature and gradient drift in the large scale magnetic field of the Sun are important for establishing the three-dimensional intensity distributions of these particles in the heliosphere during periods of solar minimum conditions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andam, Cheryl P.; Doroghazi, James R.; Campbell, Ashley N.

We show that Streptomyces biogeography in soils across North America is influenced by the regional diversification of microorganisms due to dispersal limitation and genetic drift. Streptomyces spp. form desiccation-resistant spores, which can be dispersed on the wind, allowing for a strong test of whether dispersal limitation governs patterns of terrestrial microbial diversity. We employed an approach that has high sensitivity for determining the effects of genetic drift. Specifically, we examined the genetic diversity and phylogeography of physiologically similar Streptomyces strains isolated from geographically distributed yet ecologically similar habitats. We found that Streptomyces beta diversity scales with geographic distance and bothmore » beta diversity and phylogenetic diversity manifest in a latitudinal diversity gradient. This pattern of Streptomyces biogeography resembles patterns seen for diverse species of plants and animals, and we therefore evaluated these data in the context of ecological and evolutionary hypotheses proposed to explain latitudinal diversity gradients. The data are consistent with the hypothesis that niche conservatism limits dispersal, and historical patterns of glaciation have limited the time for speciation in higher-latitude sites. Most notably, higher-latitude sites have lower phylogenetic diversity, higher phylogenetic clustering, and evidence of range expansion from lower latitudes. In addition, patterns of beta diversity partition with respect to the glacial history of sites. Furthermore, the data support the hypothesis that extant patterns of Streptomyces biogeography have been driven by historical patterns of glaciation and are the result of demographic range expansion, dispersal limitation, and regional diversification due to drift.« less

Equinoctial asymmetry in the zonal distribution of scintillation as observed by GPS receivers in Indonesia

NASA Astrophysics Data System (ADS)

Abadi, P.; Otsuka, Y.; Shiokawa, K.; Husin, A.; Liu, Huixin; Saito, S.

2017-08-01

We investigate the azimuthal distribution of amplitude scintillation observed by Global Positioning System (GPS) ground receivers at Pontianak (0.0°S, 109.3°E; magnetic latitude: 9.8°S) and Bandung (6.9°S, 107.6°E; magnetic latitude: 16.7°S) in Indonesia in March and September from 2011 to 2015. The scintillation is found to occur more to the west than to the east in March at both stations, whereas no such zonal difference is found in September. We also analyze the zonal scintillation drift as estimated using three closely spaced single-frequency GPS receivers at Kototabang (0.2°S, 100.3°E; magnetic latitude: 9.9°S) in Indonesia during 2003-2015 and the zonal thermospheric neutral wind as measured by the CHAMP satellite at longitudes of 90°-120°E during 2001-2008. We find that the velocities of both the zonal scintillation drift and the neutral wind decrease with increasing latitudes. Interestingly, the latitudinal gradients of both the zonal scintillation drift and the neutral wind are steeper in March than in September. These steeper March gradients may be responsible for the increased westward altitudinal and latitudinal tilting of plasma bubbles in March. This equinoctial asymmetry could be responsible for the observed westward bias in scintillation in March, because the scintillation is more likely to occur when radio waves pass through longer lengths of plasma irregularities in the plasma bubbles.

Coastal Processes Study of Santa Barbara and Ventura Counties, California

USGS Publications Warehouse

Barnard, Patrick L.; Revell, David L.; Hoover, Dan; Warrick, Jon; Brocatus, John; Draut, Amy E.; Dartnell, Pete; Elias, Edwin; Mustain, Neomi; Hart, Pat E.; Ryan, Holly F.

2009-01-01

The Santa Barbara littoral cell (SBLC) is a complex coastal system with significant management challenges. The coastline ranges broadly in exposure to wave energy, fluvial inputs, hard structures, and urbanization. Geologic influence (structural control) on coastline orientation exerts an important control on local beach behavior, with anthropogenic alterations and the episodic nature of sediment supply and transport also playing important roles. Short- and long-term temporal analyses of shoreline change, beach width, and volume change show no obvious trends in regional beach behavior. Extensive armoring along the SBLC has accreted the back beach, narrowing beach widths and in some cases increasing sediment transport. Unarmored beaches have exhibited mild erosion while maintaining similar widths. Harbor constructions have had notable impacts on downdrift beaches, but once the coastal system has equilibrated the signal becomes strongly dampened and littoral-drift gradients driven by natural shoreline orientation again become dominant. Sediment inputs from the Santa Clara River dominate sediment processes on beaches to the south. The SBLC is dominated by episodic flood and storm-wave events. Exceptionally large accretion signals along this stretch of coastline are closely tied to major flood events when large amounts of sediment are deposited in deltas. These deltas decay over time, supplying downdrift beaches with sediment. Storm-wave impacts and gradients in alongshore transport can lead to beach rotations and migrating erosion hotspots when geological controls are weak. Annual and seasonal rates of cross-shore and alongshore transport are at least 2-3 times higher for the more west- and southwest-facing beaches south of the Ventura River as compared to the more sheltered beaches to the west/north. Gross littoral transports are good approximations of net littoral transports for beaches west/north of Ventura as transport is almost purely unidirectional. However, significant transport reversals occur intermittently in the east/south, especially adjacent to the Ventura and Channel Islands Harbors. For this reason, and due to the episodic nature of flood and storm wave events, using dredging rates from the harbors at Ventura and Channel Islands as a proxy for drift rates may be invalid. An extensive grain-size investigation of the surface and shallow subsurface in the nearshore region of the SBLC identified only two sites for potential beach-nourishment material: offshore of Santa Barbara Harbor and Oil Piers. However, seismic-reflection lines offshore of Santa Barbara suggest shallow bedrock (< 1 m), so the volume of coarse material in this area may be limited. Sampling of the Santa Clara River delta was minimal, but this site could be promising. Numerical modeling shows that local beach behavior is primarily influenced by local littoral-drift gradients, which are in turn controlled by natural shoreline orientation. Given the high rates of net littoral drift and the relatively insignificant cross-shore transport in the SBLC, the SBLC should be considered a sediment-limited system (as opposed to a transport-limited system). Management actions, such as any future beach nourishment, would likely have a severely limited life span without employing additional measures that adequately address local littoral-drift gradients to retain added sand.

Modeling and simulation of Cu diffusion and drift in porous CMOS backend dielectrics

NASA Astrophysics Data System (ADS)

Ali, R.; Fan, Y.; King, S.; Orlowski, M.

2018-06-01

With the advent of porous dielectrics, Cu drift-diffusion reliability issues in CMOS backend have only been exacerbated. In this regard, a modeling and simulation study of Cu atom/ion drift-diffusion in porous dielectrics is presented to assess the backend reliability and to explore conditions for a reliable Resistive Random Access Memory (RRAM) operation. The numerical computation, using elementary jump frequencies for a random walk in 2D and 3D, is based on an extended adjacency tensor concept. It is shown that Cu diffusion and drift transport are affected as much by the level of porosity as by the pore morphology. Allowance is made for different rates of Cu dissolution into the dielectric and for Cu absorption and transport at and on the inner walls of the pores. Most of the complex phenomena of the drift-diffusion transport in porous media can be understood in terms of local lateral and vertical gradients and the degree of their perturbation caused by the presence of pores in the transport domain. The impact of pore morphology, related to the concept of tortuosity, is discussed in terms of "channeling" and "trapping" effects. The simulations are calibrated to experimental results of porous SiCOH layers of 25 nm thickness, sandwiched between Cu and Pt(W) electrodes with experimental porosity levels of 0%, 8%, 12%, and 25%. We find that porous SICOH is more immune to Cu+ drift at 300 K than non-porous SICOH.

Diamagnetic drift effects on the low-n magnetohydrodynamic modes at the high mode pedestal with plasma rotation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, L. J.; Kotschenreuther, M. T.; Valanju, P.

2014-06-15

The diamagnetic drift effects on the low-n magnetohydrodynamic instabilities at the high-mode (H-mode) pedestal are investigated in this paper with the inclusion of bootstrap current for equilibrium and rotation effects for stability, where n is the toroidal mode number. The AEGIS (Adaptive EiGenfunction Independent Solutions) code [L. J. Zheng and M. T. Kotschenreuther, J. Comp. Phys. 211 (2006)] is extended to include the diamagnetic drift effects. This can be viewed as the lowest order approximation of the finite Larmor radius effects in consideration of the pressure gradient steepness at the pedestal. The H-mode discharges at Jointed European Torus is reconstructedmore » numerically using the VMEC code [P. Hirshman and J. C. Whitson, Phys. Fluids 26, 3553 (1983)], with bootstrap current taken into account. Generally speaking, the diamagnetic drift effects are stabilizing. Our results show that the effectiveness of diamagnetic stabilization depends sensitively on the safe factor value (q{sub s}) at the safety-factor reversal or plateau region. The diamagnetic stabilization are weaker, when q{sub s} is larger than an integer; while stronger, when q{sub s} is smaller or less larger than an integer. We also find that the diamagnetic drift effects also depend sensitively on the rotation direction. The diamagnetic stabilization in the co-rotation case is stronger than in the counter rotation case with respect to the ion diamagnetic drift direction.« less

Analysis of edge stability for models of heat flux width

DOE PAGES

Makowski, Michael A.; Lasnier, Charles J.; Leonard, Anthony W.; ...

2017-05-12

Detailed measurements of the n e, and T e, and T i profiles in the vicinity of the separatrix of ELMing H-mode discharges have been used to examine plasma stability at the extreme edge of the plasma and assess stability dependent models of the heat flux width. The results are strongly contrary to the critical gradient model, which posits that a ballooning instability determines a gradient scale length related to the heat flux width. The results of this analysis are not sensitive to the choice of location to evaluate stability. Significantly, it is also found that the results are completelymore » consistent with the heuristic drift model for the heat flux width. Here the edge pressure gradient scales with plasma density and is proportional to the pressure gradient inferred from the equilibrium in accordance with the predictions of that theory.« less

Magnetic field gradients inferred from multi-point measurements of Cluster FGM and EDI

NASA Astrophysics Data System (ADS)

Teubenbacher, Robert; Nakamura, Rumi; Giner, Lukas; Plaschke, Ferdinand; Baumjohann, Wolfgang; Magnes, Werner; Eichelberger, Hans; Steller, Manfred; Torbert, Roy

2013-04-01

We use Cluster data from fluxgate magnetometer (FGM) and electron drift instrument (EDI) to determine the magnetic field gradients in the near-Earth magnetotail. Here we use the magnetic field data from FGM measurements as well as the gyro-time data of electrons determined from the time of flight measurements of EDI. The results are compared with the values estimated from empirical magnetic field models for different magnetospheric conditions. We also estimated the spin axis offset of FGM based on comparison between EDI and FGM data and discuss the possible effect in determining the current sheet characteristics.

Effects of Sheared Flow on Microinstabilities and Transport in Plasmas

NASA Astrophysics Data System (ADS)

H, Sanuki; K, Itoh; A, Fujisawa; J, Q. Dong

2005-02-01

Theoretical and experimental studies associated with electric field effects on the stability and transport are briefly surveyed. The effects of radial electric field on the suppression and/or enhancement of various microinstabilities such as drift waves, flute mode and temperature gradient modes are discussed. The suppression of flow shear on the electron temperature gradient mode in plasmas with slightly hollow density profiles is investigated by solving the gyrokinetic integral eigenvalue equation. Comparison between theoretical predictions and experimental observations based on the HIBP measurements with high temporal and spatial resolutions is made in bumpy tori and heliotron (CHS) devices.

Theory of ITG turbulent saturation in stellarators: identifying mechanisms to reduce turbulent transport

DOE PAGES

Hegna, Chris C.; Terry, Paul W.; Faber, Ben J.

2018-02-01

A three-field fluid model that allows for general three-dimensional equilibrium geometry is developed to describe ion temperature gradient turbulent saturation processes in stellarators. The theory relies on the paradigm of nonlinear transfer of energy from unstable to damped modes at comparable wavelength as the dominant saturation mechanism. The unstable-to-damped mode interaction is enabled by a third mode that for dominant energy transfer channels primarily serves as a regulator of the nonlinear energy transfer rate. The identity of the third wave in the interaction defines different scenarios for turbulent saturation with the dominant scenario depending upon the properties of the 3Dmore » geometry. The nonlinear energy transfer physics is quantified by the product of a turbulent correlation lifetime and a geometric coupling coefficient. The turbulent correlation time is determined by a three-wave frequency mismatch, which at long wavelength can be calculated from the sum of the linear eigenfrequencies of the three modes. Larger turbulent correlation times denote larger levels of nonlinear energy transfer and hence smaller turbulent transport. The theory provides an analytic prediction for how 3D shaping can be tuned to lower turbulent transport through saturation processes.« less

Theory of ITG turbulent saturation in stellarators: identifying mechanisms to reduce turbulent transport

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hegna, Chris C.; Terry, Paul W.; Faber, Ben J.

A three-field fluid model that allows for general three-dimensional equilibrium geometry is developed to describe ion temperature gradient turbulent saturation processes in stellarators. The theory relies on the paradigm of nonlinear transfer of energy from unstable to damped modes at comparable wavelength as the dominant saturation mechanism. The unstable-to-damped mode interaction is enabled by a third mode that for dominant energy transfer channels primarily serves as a regulator of the nonlinear energy transfer rate. The identity of the third wave in the interaction defines different scenarios for turbulent saturation with the dominant scenario depending upon the properties of the 3Dmore » geometry. The nonlinear energy transfer physics is quantified by the product of a turbulent correlation lifetime and a geometric coupling coefficient. The turbulent correlation time is determined by a three-wave frequency mismatch, which at long wavelength can be calculated from the sum of the linear eigenfrequencies of the three modes. Larger turbulent correlation times denote larger levels of nonlinear energy transfer and hence smaller turbulent transport. The theory provides an analytic prediction for how 3D shaping can be tuned to lower turbulent transport through saturation processes.« less

A number-form area in the blind

PubMed Central

Abboud, Sami; Maidenbaum, Shachar; Dehaene, Stanislas; Amedi, Amir

2015-01-01

Distinct preference for visual number symbols was recently discovered in the human right inferior temporal gyrus (rITG). It remains unclear how this preference emerges, what is the contribution of shape biases to its formation and whether visual processing underlies it. Here we use congenital blindness as a model for brain development without visual experience. During fMRI, we present blind subjects with shapes encoded using a novel visual-to-music sensory-substitution device (The EyeMusic). Greater activation is observed in the rITG when subjects process symbols as numbers compared with control tasks on the same symbols. Using resting-state fMRI in the blind and sighted, we further show that the areas with preference for numerals and letters exhibit distinct patterns of functional connectivity with quantity and language-processing areas, respectively. Our findings suggest that specificity in the ventral ‘visual’ stream can emerge independently of sensory modality and visual experience, under the influence of distinct connectivity patterns. PMID:25613599

Studies of Turbulence and Transport in Alcator C-Mod H-Mode Plasmas with Phase Contrast Imaging and Comparisons with GYRO

NASA Astrophysics Data System (ADS)

Porkolab, M.; Lin, L.; Edlund, E. M.; Rost, J. C.; Fiore, C. L.; Greenwald, M.; Mikkelsen, D.

2008-11-01

We present recent experimental measurements of turbulence and transport in C-Mod H-Mode plasmas with and without internal transport barriers (ITB) using the phase contrast imaging (PCI) diagnostic and compare the results with GYRO predictions. In plasmas without ITB, the fluctuation above 300 kHz observed by PCI agrees with ITG in GYRO simulation, including the direction of propagation, wavenumber spectrum, and absolute intensity within experimental uncertainly (+/-75%). After transition to ITBs, the observed overall fluctuation intensity increases. GYRO simulation in the core shows that ITG dominates in ITBs but its intensity is lower than the overall experimental measurements which may also include contributions from the plasma edge. These results, as well as the impact of varying ∇Ti, ∇n, and ExB shear on turbulence will be discussed. C.L. Fiore et al., Fusion Sci. Technol., 51, 303 (2007). M. Porkolab et al., IEEE Trans. Plasma Sci. 34, 229 (2006). J. Candy et al., Phys. Rev. Lett., 91, 045001 (2003).

Gyrokinetic simulation of ITG modes in a three-mode coupling model

NASA Astrophysics Data System (ADS)

Jenkins, Thomas G.; Lee, W. W.

2004-11-01

A three-mode coupling model of ITG modes with adiabatic electrons is studied both analytically and numerically in 2-dimensional slab geometry using the gyrokinetic formalism. It can be shown analytically that the (quasilinear) saturation amplitude of the waves in the system should be enhanced by the inclusion of the parallel velocity nonlinearity in the governing gyrokinetic equation. The effect of this (frequently neglected) nonlinearity on the steady-state transport properties of the plasma is studied numerically using standard gyrokinetic particle simulation techniques. The balance [1] between various steady-state transport properties of the model (particle and heat flux, entropy production, and collisional dissipation) is examined. Effects resulting from the inclusion of nonadiabatic electrons in the model are also considered numerically, making use of the gyrokinetic split-weight scheme [2] in the simulations. [1] W. W. Lee and W. M. Tang, Phys. Fluids 31, 612 (1988). [2] I. Manuilskiy and W. W. Lee, Phys. Plasmas 7, 1381 (2000).

Investigations of the role of nonlinear couplings in structure formation and transport regulation in plasma turbulence

NASA Astrophysics Data System (ADS)

Holland, Christopher George

Studies of nonlinear couplings and dynamics in plasma turbulence are presented. Particular areas of focus are analytic studies of coherent structure formation in electron temperature gradient turbulence, measurement of nonlinear energy transfer in simulations of plasma turbulence, and bispectral analysis of experimental and computational data. The motivation for these works has been to develop and expand the existing theories of plasma transport, and verify the nonlinear predictions of those theories in simulation and experiment. In Chapter II, we study electromagnetic secondary instabilities of electron temperature gradient turbulence. The growth rate for zonal flow generation via modulational instability of electromagnetic ETG turbulence is calculated, as well as that for zonal (magnetic) field generation. In Chapter III, the stability and saturation of streamers in ETG turbulence is considered, and shown to depend sensitively upon geometry and the damping rates of the Kelvin-Helmholtz mode. Requirements for a credible theory of streamer transport are presented. In addition, a self-consistent model for interactions between ETG and ITG (ion temperature gradient) turbulence is presented. In Chapter IV, the nonlinear transfer of kinetic and internal energy is measured in simulations of plasma turbulence. The regulation of turbulence by radial decorrelation due to zonal flows and generation of zonal flows via the Reynolds stress are explicitly demonstrated, and shown to be symmetric facets of a single nonlinear process. Novel nonlinear saturation mechanisms for zonal flows are discussed. In Chapter V, measurements of fluctuation bicoherence in the edge of the DIII-D tokamak are presented. It is shown that the bicoherence increases transiently before a L-H transition, and decays to its initial value after the barrier has formed. The increase in bicoherence is localized to the region where the transport barrier forms, and shows strong coupling between well-separated frequencies. These results are qualitatively reproduced in a simple numerical "thought experiment," described in Chapter VI, which suggests that zonal flows may trigger the L-H transition.

The drift force on an object in an inviscid weakly-varying rotational flow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wallis, G.B.

The force on any stationary object in an inviscid incompressible extensive steady flow is derived in terms of the added mass tensor and gradient of velocity of the undisturbed fluid. Taylor`s theorem is extended to flows with weak vorticity. There are possible applications to constitutive equations for two-phase flow.

VERTICAL ATMOSPHERIC PROFILE OF MERCURY SPECIES OVER SOUTH FLORIDA

EPA Science Inventory

The Florida Atmospheric Mercury Study (FAMS) was conducted from 1992 to 1996 to characterize the atmospheric loadings of mercury to Florida. This study found relatively high levels of annual wet mercury deposition (32-43 Itg m') to south Florida. Guentzel developed a simple box m...

Local collective motion analysis for multi-probe dynamic imaging and microrheology

NASA Astrophysics Data System (ADS)

Khan, Manas; Mason, Thomas G.

2016-08-01

Dynamical artifacts, such as mechanical drift, advection, and hydrodynamic flow, can adversely affect multi-probe dynamic imaging and passive particle-tracking microrheology experiments. Alternatively, active driving by molecular motors can cause interesting non-Brownian motion of probes in local regions. Existing drift-correction techniques, which require large ensembles of probes or fast temporal sampling, are inadequate for handling complex spatio-temporal drifts and non-Brownian motion of localized domains containing relatively few probes. Here, we report an analytical method based on local collective motion (LCM) analysis of as few as two probes for detecting the presence of non-Brownian motion and for accurately eliminating it to reveal the underlying Brownian motion. By calculating an ensemble-average, time-dependent, LCM mean square displacement (MSD) of two or more localized probes and comparing this MSD to constituent single-probe MSDs, we can identify temporal regimes during which either thermal or athermal motion dominates. Single-probe motion, when referenced relative to the moving frame attached to the multi-probe LCM trajectory, provides a true Brownian MSD after scaling by an appropriate correction factor that depends on the number of probes used in LCM analysis. We show that LCM analysis can be used to correct many different dynamical artifacts, including spatially varying drifts, gradient flows, cell motion, time-dependent drift, and temporally varying oscillatory advection, thereby offering a significant improvement over existing approaches.

Evaluation of dual-tip micromanometers during 21-day implantation in goats

NASA Technical Reports Server (NTRS)

Reister, C. A.; Koenig, S. C.; Schaub, J. D.; Ewert, D. L.; Swope, R. D.; Latham, R. D.; Fanton, J. W.; Convertino, V. A. (Principal Investigator)

1998-01-01

Investigative research efforts using a cardiovascular model required the determination of central circulatory haemodynamic and arterial system parameters for the evaluation of cardiovascular performance. These calculations required continuous beat-to-beat measurement of pressure within the four chambers of the heart and great vessels. Sensitivity and offset drift, longevity, and sources of error for eight 3F dual-tipped micromanometers were determined during 21 days of implantation in goats. Subjects were instrumented with pairs of chronically implanted fluid-filled access catheters in the left and right ventricles, through which dual-tipped (test) micromanometers were chronically inserted and single-tip (standard) micromanometers were acutely inserted. Acutely inserted sensors were calibrated daily and measured pressures were compared in vivo to the chronically inserted sensors. Comparison of the pre- and post-gain calibration of the chronically inserted sensors showed a mean sensitivity drift of 1.0 +/- 0.4% (99% confidence, n = 9 sensors) and mean offset drift of 5.0 +/- 1.5 mmHg (99% confidence, n = 9 sensors). Potential sources of error for these drifts were identified, and included measurement system inaccuracies, temperature drift, hydrostatic column gradients, and dynamic pressure changes. Based upon these findings, we determined that these micromanometers may be chronically inserted in high-pressure chambers for up to 17 days with an acceptable error, but should be limited to acute (hours) insertions in low-pressure applications.

Numerical analysis of azimuthal rotating spokes in a crossed-field discharge plasma

NASA Astrophysics Data System (ADS)

Kawashima, R.; Hara, K.; Komurasaki, K.

2018-03-01

Low-frequency rotating spokes are obtained in a cross-field discharge plasma using two-dimensional numerical simulations. A particle-fluid hybrid model is used to model the plasma flow in a configuration similar to a Hall thruster. It has been reported that the drift-diffusion approximation for an electron fluid results in an ill-conditioned matrix when solving for the potential because of the differences in the electron mobilities across the magnetic field and in the direction of the E × B drift. In this paper, we employ a hyperbolic approach that enables stable calculation, namely, better iterative convergence of the electron fluid model. Our simulation results show a coherent rotating structure propagating in the E × B direction with a phase velocity of 2500 m s‑1, which agrees with experimental data. The phase velocity obtained from the numerical simulations shows good agreement with that predicted by the dispersion relation of the gradient drift instability.

Energetic Particles Dynamics in Mercury's Magnetosphere

NASA Technical Reports Server (NTRS)

Walsh, Brian M.; Ryou, A.S.; Sibeck, D. G.; Alexeev, I. I.

2013-01-01

We investigate the drift paths of energetic particles in Mercury's magnetosphere by tracing their motion through a model magnetic field. Test particle simulations solving the full Lorentz force show a quasi-trapped energetic particle population that gradient and curvature drift around the planet via "Shabansky" orbits, passing though high latitudes in the compressed dayside by equatorial latitudes on the nightside. Due to their large gyroradii, energetic H+ and Na+ ions will typically collide with the planet or the magnetopause and will not be able to complete a full drift orbit. These simulations provide direct comparison for recent spacecraft measurements from MESSENGER. Mercury's offset dipole results in an asymmetric loss cone and therefore an asymmetry in particle precipitation with more particles precipitating in the southern hemisphere. Since the planet lacks an atmosphere, precipitating particles will collide directly with the surface of the planet. The incident charged particles can kick up neutrals from the surface and have implications for the formation of the exosphere and weathering of the surface

The development of magnetic field measurement system for drift-tube linac quadrupole

NASA Astrophysics Data System (ADS)

Zhou, Jianxin; Kang, Wen; Yin, Baogui; Peng, Quanling; Li, Li; Liu, Huachang; Gong, Keyun; Li, Bo; Chen, Qiang; Li, Shuai; Liu, Yiqin

2015-06-01

In the China Spallation Neutron Source (CSNS) linac, a conventional 324 MHz drift-tube linac (DTL) accelerating an H- ion beam from 3 MeV to 80 MeV has been designed and manufactured. The electromagnetic quadrupoles (EMQs) are widely used in a DTL accelerator. The main challenge of DTLQ's structure is to house a strong gradient EMQ in the much reduced space of the drift-tube (DT). To verify the DTLQ's design specifications and fabrication quality, a precision harmonic coil measurement system has been developed, which is based on the high precision movement platform, the harmonic coil with ceramic frame and the special method to make the harmonic coil and the quadrupoles coaxial. After more than one year's continuous running, the magnetic field measurement system still performs accurately and stably. The field measurement of more than one hundred DTLQ has been finished. The components and function of the measurement system, the key point of the technology and the repeatability of the measurement results are described in this paper.

Effect of resonant magnetic perturbations on secondary structures in drift-wave turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leconte, M.; Diamond, P. H.; CMTFO and CASS, UCSD, California 92093

2011-08-15

Recent experiments showed a decrease of long range correlations during the application of resonant magnetic perturbations (RMPs) [Y. Xu et al., Nucl. Fusion 51, 063020 (2011)]. This finding suggests that RMPs damp zonal flows. To elucidate the effect of the RMPs on zonal structures in drift wave turbulence, we construct a generalized Hasegawa-Wakatani model including RMP fields. The effect of the RMPs is to induce a linear coupling between the zonal electric field and the zonal density gradient, which drives the system to a state of electron radial force balance for large RMP amplitude. A predator-prey model coupling the primarymore » drift wave dynamics to the zonal modes evolution is derived. This model has both turbulence drive and RMP amplitude as control parameters and predicts a novel type of transport bifurcation in the presence of RMPs. The novel regime has a power threshold which increases with RMP amplitude as {gamma}{sub c}{approx}[({delta}B{sub r}/B)]{sup 2}.« less

78 FR 25135 - Submission for OMB Review; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-29

... burden, to (1) Office of Information and Regulatory Affairs, Office of Management and Budget, Attention.... Upon completion, the information will be used by the Tribe and ITG to develop training needs... transactions for businesses who accept this form of payment. The IRS is launching pilots aimed at determining...

Studies of numerical algorithms for gyrokinetics and the effects of shaping on plasma turbulence

NASA Astrophysics Data System (ADS)

Belli, Emily Ann

Advanced numerical algorithms for gyrokinetic simulations are explored for more effective studies of plasma turbulent transport. The gyrokinetic equations describe the dynamics of particles in 5-dimensional phase space, averaging over the fast gyromotion, and provide a foundation for studying plasma microturbulence in fusion devices and in astrophysical plasmas. Several algorithms for Eulerian/continuum gyrokinetic solvers are compared. An iterative implicit scheme based on numerical approximations of the plasma response is developed. This method reduces the long time needed to set-up implicit arrays, yet still has larger time step advantages similar to a fully implicit method. Various model preconditioners and iteration schemes, including Krylov-based solvers, are explored. An Alternating Direction Implicit algorithm is also studied and is surprisingly found to yield a severe stability restriction on the time step. Overall, an iterative Krylov algorithm might be the best approach for extensions of core tokamak gyrokinetic simulations to edge kinetic formulations and may be particularly useful for studies of large-scale ExB shear effects. The effects of flux surface shape on the gyrokinetic stability and transport of tokamak plasmas are studied using the nonlinear GS2 gyrokinetic code with analytic equilibria based on interpolations of representative JET-like shapes. High shaping is found to be a stabilizing influence on both the linear ITG instability and nonlinear ITG turbulence. A scaling of the heat flux with elongation of chi ˜ kappa-1.5 or kappa-2 (depending on the triangularity) is observed, which is consistent with previous gyrofluid simulations. Thus, the GS2 turbulence simulations are explaining a significant fraction, but not all, of the empirical elongation scaling. The remainder of the scaling may come from (1) the edge boundary conditions for core turbulence, and (2) the larger Dimits nonlinear critical temperature gradient shift due to the enhancement of zonal flows with shaping, which is observed with the GS2 simulations. Finally, a local linear trial function-based gyrokinetic code is developed to aid in fast scoping studies of gyrokinetic linear stability. This code is successfully benchmarked with the full GS2 code in the collisionless, electrostatic limit, as well as in the more general electromagnetic description with higher-order Hermite basis functions.

The roles of genetic drift and natural selection in quantitative trait divergence along an altitudinal gradient in Arabidopsis thaliana

PubMed Central

Luo, Y; Widmer, A; Karrenberg, S

2015-01-01

Understanding how natural selection and genetic drift shape biological variation is a central topic in biology, yet our understanding of the agents of natural selection and their target traits is limited. We investigated to what extent selection along an altitudinal gradient or genetic drift contributed to variation in ecologically relevant traits in Arabidopsis thaliana. We collected seeds from 8 to 14 individuals from each of 14 A. thaliana populations originating from sites between 800 and 2700 m above sea level in the Swiss Alps. Seed families were grown with and without vernalization, corresponding to winter-annual and summer-annual life histories, respectively. We analyzed putatively neutral genetic divergence between these populations using 24 simple sequence repeat markers. We measured seven traits related to growth, phenology and leaf morphology that are rarely reported in A. thaliana and performed analyses of altitudinal clines, as well as overall QST-FST comparisons and correlation analyses among pair-wise QST, FST and altitude of origin differences. Multivariate analyses suggested adaptive differentiation along altitude in the entire suite of traits, particularly when expressed in the summer-annual life history. Of the individual traits, a decrease in rosette leaf number in the vegetative state and an increase in leaf succulence with increasing altitude could be attributed to adaptive divergence. Interestingly, these patterns relate well to common within- and between-species trends of smaller plant size and thicker leaves at high altitude. Our results thus offer exciting possibilities to unravel the underlying mechanisms for these conspicuous trends using the model species A. thaliana. PMID:25293874

Conditions and growth rate of Rayleigh instability in a Hall thruster under the effect of ion temperature.

PubMed

Malik, Hitendra K; Singh, Sukhmander

2011-03-01

Rayleigh instability is investigated in a Hall thruster under the effect of finite temperature and density gradient of the plasma species. The instability occurs only when the frequency of the oscillations ω falls within a frequency band described by k{y}u₀+1/k_{y}∂²u_{0}/∂x²+Ω/k_{y}n_{0}∂n₀/∂x≪ω

Variation of cosmic rays and solar wind properties with respect to the heliospheric current sheet. II - Rigidity dependence of the latitudinal gradient of cosmic rays at 1 AU

NASA Technical Reports Server (NTRS)

Newkirk, G., Jr.; Asbridge, J.; Lockwood, J. A.; Garcia-Munoz, M.; Simpson, J. A.

1986-01-01

The role which empirical determinations of the latitudinal variation of cosmic rays with respect to the current sheet may have in illuminating the importance of the cross-field drift of particles in the large-scale heliospheric magnetic field is discussed. Using K coronameter observations and measured solar wind speeds, the latitudinal gradients have been determined with respect to the current sheet for cosmic rays in four rigidity ranges. Gradients vary between approximately -2 and -50 pct/AU. The rigidity dependence of the decrease of cosmic ray flux with distance from the current sheet lies between the -0.72 to -0.86 power of the rigidity, with the exact dependence being determined by the definition used for the median rigidity of each monitor.

Stability of Gradient Field Corrections for Quantitative Diffusion MRI.

PubMed

Rogers, Baxter P; Blaber, Justin; Welch, E Brian; Ding, Zhaohua; Anderson, Adam W; Landman, Bennett A

2017-02-11

In magnetic resonance diffusion imaging, gradient nonlinearity causes significant bias in the estimation of quantitative diffusion parameters such as diffusivity, anisotropy, and diffusion direction in areas away from the magnet isocenter. This bias can be substantially reduced if the scanner- and coil-specific gradient field nonlinearities are known. Using a set of field map calibration scans on a large (29 cm diameter) phantom combined with a solid harmonic approximation of the gradient fields, we predicted the obtained b-values and applied gradient directions throughout a typical field of view for brain imaging for a typical 32-direction diffusion imaging sequence. We measured the stability of these predictions over time. At 80 mm from scanner isocenter, predicted b-value was 1-6% different than intended due to gradient nonlinearity, and predicted gradient directions were in error by up to 1 degree. Over the course of one month the change in these quantities due to calibration-related factors such as scanner drift and variation in phantom placement was <0.5% for b-values, and <0.5 degrees for angular deviation. The proposed calibration procedure allows the estimation of gradient nonlinearity to correct b-values and gradient directions ahead of advanced diffusion image processing for high angular resolution data, and requires only a five-minute phantom scan that can be included in a weekly or monthly quality assurance protocol.

Seismostratigraphic model of the Sines Contourite Drift (SW Portuguese Margin) - depositional evolution, structural control and paleoceanographic implications

NASA Astrophysics Data System (ADS)

Rodrigues, Sara; Roque, Cristina; Terrinha, Pedro; Hernández-Molina, Francisco J.; Llave, Estefania; Ercilla, Gemma; Casas, David; Farran, Marcelli

2017-04-01

The Sines Contourite Drift, located in the Southwest Portuguese margin, is a distal drift of the Contourite Depositional System of the Gulf of Cadiz, built by the influence of the Mediterranean Outflow Water (MOW). This drift is located between 1000 and 2000 m water depth on the Alentejo margin continental slope. The Sines Drift is bounded by four major morphologic features, the 1.4 km high Pereira de Sousa Fault escarpment to the west, the upper continental slope to the east and the Setúbal and São Vicente canyons to the north and south, respectively. This work presents a seismic stratigraphic analysis and proposes an evolutionary model for the Sines Drift, as well as the identification of its main driving mechanisms and constraints. We used new seismic reflection lines acquired during the MOWER/CONDRIBER cruise in September-October 2014, pre-existent multichannel seismic lines and lithostratigraphic and chronological data from Site U1391 of IODP Expedition 339 carried out in 2011-2012. Three evolutionary phases are identified for the Sines Drift development: 1) a sheeted-contourite-drift phase (<5.3-3.2 Ma) built since the Late Miocene by an initially weak flowing MOW; 2) a mounded-contourite-drift phase (3.2-0.7 Ma) from Late Pliocene to Early Quaternary times characterized by a mounded drift in the north and sheeted in the south, with a succession of sinuous N-S paleomoats in the east built as a result of a MOW enhancement; and 3) a plastered-contourite-drift phase from Mid-Pleistocene (0.7 Ma) till the present day, characterized by the present depositional (sandy-muddy drifts) and erosional (moats) contourite features associated with two major events of MOW intensification. The growth of the Sines Drift was constrained, in a long-term, by seafloor morphologies that resulted from the Mesozoic rifting processes of the Southwest Portuguese margin, inherited from the Mesozoic rifting phases. The paleomorphology provided accommodation space for drift growth and conditioned its overall architecture. The N-S horsts built during the Mesozoic rifting confined drift formation and did not allow lateral migration. The formation of the Sines Drift has also been influenced, in short-term, by climatic fluctuations and sea-level changes especially during the Quaternary. The succession of sinuous paleomoats beneath the present-day moat suggests a persistent and northward flowing MOW with several phases of enhancement. It was also perceived that the São Vicente and Setúbal canyons took most of the downslope sediment supply, as well as the occurrence of mass-movement processes in the west associated with the steep gradient of the Pereira de Sousa escarpment. All these results suggest the Sines Drift had a complex evolution controlled by several and varied factors at different scales.

Effects of low central fuelling on density and ion temperature profiles in reversed shear plasmas on JT-60U

NASA Astrophysics Data System (ADS)

Takenaga, H.; Ide, S.; Sakamoto, Y.; Fujita, T.; JT-60 Team

2008-07-01

Effects of low central fuelling on density and ion temperature profiles have been investigated using negative ion based neutral beam injection and electron cyclotron heating (ECH) in reversed shear plasmas on JT-60U. Strong internal transport barrier (ITB) was maintained in density and ion temperature profiles, when central fuelling was decreased by switching positive ion based neutral beam injection to ECH after the strong ITB formation. Similar density and ion temperature ITBs were formed for the low and high central fuelling cases during the plasma current ramp-up phase. Strong correlation between the density gradient and the ion temperature gradient was observed, indicating that particle transport and ion thermal transport are strongly coupled or the density gradient assists the ion temperature ITB formation through suppression of drift wave instabilities such as ion temperature gradient mode. These results support that the density and ion temperature ITBs can be formed under reactor relevant conditions.

Influence of flow regime and channel morphology on larval drift and dispersion in a large regulated river

NASA Astrophysics Data System (ADS)

Erwin, S.; Jacobson, R. B.

2013-12-01

Larval drift is a critical phase of ontogenetic development for many species of lotic fishes. Downstream advection and dispersion of passively drifting larvae or eggs is controlled by the complex interaction of flow regime, channel planform, local channel morphology, and the resulting hydraulic gradients. In many regulated rivers, channel engineering and perturbations to the flow regime may disrupt natural drift processes and impact successful recruitment of native fishes. Here we explore the influence of flow regime and channel morphology on the downstream transport, dispersion, and retention of Pallid Sturgeon larvae, an endangered species endemic to the Mississippi River basin and the focus of significant conservation effort on the Missouri River. The transition from drifting free embryo to exogenously feeding larvae has been identified as a potential life stage bottleneck for the Pallid Sturgeon. Previous studies have indicated that river regulation and fragmentation may contribute to mortality of larval Pallid Sturgeon by reducing the extent of free-flowing river required by free embryos to complete the transition to exogenous feeding. Additionally, channelization may have increased the rate at which larvae are advected downstream out of the Missouri River basin. We describe the complex interactions and influence of morphologic and hydraulic factors on larval drift using an extensive library of hydroacoustic data collected along more than 1300 km of the Lower Missouri River. We use a one-dimensional advection-dispersion model to estimate total drift distance and employ the longitudinal dispersion coefficient as a measure to quantify the tendency towards dispersion or retention of passively drifting larvae in geomorphically distinct segments of river. We use a two-dimensional hydrodynamic model to evaluate the sensitivity of drift and dispersion to in-channel navigation structures and flood hydrology. Based on insights gained from the analysis of field data and modeling outputs, we interpret the effects of different styles of channel morphology on larval dispersion and consider the implications of flow regime modifications or channel re-engineering on the distribution and retention of free embryos within the Lower Missouri River.

27 CFR 9.126 - Santa Clara Valley.

Code of Federal Regulations, 2014 CFR

2014-04-01

...: (1) The beginning point is at the junction of Elephant Head Creek and Pacheco Creek (approx. .75 mile... point the boundary moves in a northerly direction up Elephant Head Creek approx. 1.2 miles until it....G.S. map; (29) Then it moves northeast along Pacheco Creek approx. .5 mile to Elephant Head Creek at...

27 CFR 9.126 - Santa Clara Valley.

Code of Federal Regulations, 2013 CFR

2013-04-01

...: (1) The beginning point is at the junction of Elephant Head Creek and Pacheco Creek (approx. .75 mile... point the boundary moves in a northerly direction up Elephant Head Creek approx. 1.2 miles until it....G.S. map; (29) Then it moves northeast along Pacheco Creek approx. .5 mile to Elephant Head Creek at...

27 CFR 9.126 - Santa Clara Valley.

Code of Federal Regulations, 2010 CFR

2010-04-01

...: (1) The beginning point is at the junction of Elephant Head Creek and Pacheco Creek (approx. .75 mile... point the boundary moves in a northerly direction up Elephant Head Creek approx. 1.2 miles until it....G.S. map; (29) Then it moves northeast along Pacheco Creek approx. .5 mile to Elephant Head Creek at...

27 CFR 9.126 - Santa Clara Valley.

Code of Federal Regulations, 2012 CFR

2012-04-01

...: (1) The beginning point is at the junction of Elephant Head Creek and Pacheco Creek (approx. .75 mile... point the boundary moves in a northerly direction up Elephant Head Creek approx. 1.2 miles until it....G.S. map; (29) Then it moves northeast along Pacheco Creek approx. .5 mile to Elephant Head Creek at...

27 CFR 9.126 - Santa Clara Valley.

Code of Federal Regulations, 2011 CFR

2011-04-01

...: (1) The beginning point is at the junction of Elephant Head Creek and Pacheco Creek (approx. .75 mile... point the boundary moves in a northerly direction up Elephant Head Creek approx. 1.2 miles until it....G.S. map; (29) Then it moves northeast along Pacheco Creek approx. .5 mile to Elephant Head Creek at...

The Integration of It Governance, Information Security Leadership and Strategic Alignment in Healthcare: A Correlational Study

ERIC Educational Resources Information Center

Taft, Tiffany H.

2017-01-01

This dissertation is a study of the relationship between Information Technology Governance (ITG), information security leadership, and strategic alignment within a healthcare organization. Strong organizational leadership and adherence to the process are vital to the formulation and management of performance and implementation of key directives.…

Pedestal turbulence simulations using GENE

NASA Astrophysics Data System (ADS)

Liu, Xing; Kotschenreuther, M.; Hatch, D. R.; Zheng, L. J.; Mahajan, S.; Diallo, A.; Groebner, R. J.; Hubbard, A. E.; Hughes, J. W.; Maggi, C. F.; Saarelma, S.; JET Contributors

2017-10-01

We match frequencies, power balance, and other transport characteristics of several pedestals-two DIIID ELMy H-modes and a C-Mod I-mode, and attempt this for a C-Mod ELMy H-mode. Observed quasi-coherent fluctuations (QCFs) on the DIIID shots are identified as MTMs. The MTMs match frequency and power balance (with slight adjustment of temperature profile), and cause low transport in the density, ion heat and impurity channels- consistent with observed inter-ELM evolution of ion and electron temperature, electron and impurity density, or transport analysis of those channels. KBM can be ruled out as the dominant agent for heat transport. We find the Weakly Coherent Mode on C-Mod I-mode may be an electrostatic heavy particle/ITG mode. Analysis is ongoing for the C-Mod ELMy H-mode QCF. Pedestal density profiles in JET-ILW are consistent with ITG induced particle pinch. Work supported by US DOE under DE-FC02-04ER54698, DE-FG02-04ER54742 and DE-FC02-99ER54512 and by Eurofusion under Grant No. 633053.

The time-course of activation in the dorsal and ventral visual streams during landmark cueing and perceptual discrimination tasks.

PubMed

Lambert, Anthony J; Wootton, Adrienne

2017-08-01

Different patterns of high density EEG activity were elicited by the same peripheral stimuli, in the context of Landmark Cueing and Perceptual Discrimination tasks. The C1 component of the visual event-related potential (ERP) at parietal - occipital electrode sites was larger in the Landmark Cueing task, and source localisation suggested greater activation in the superior parietal lobule (SPL) in this task, compared to the Perceptual Discrimination task, indicating stronger early recruitment of the dorsal visual stream. In the Perceptual Discrimination task, source localisation suggested widespread activation of the inferior temporal gyrus (ITG) and fusiform gyrus (FFG), structures associated with the ventral visual stream, during the early phase of the P1 ERP component. Moreover, during a later epoch (171-270ms after stimulus onset) increased temporal-occipital negativity, and stronger recruitment of ITG and FFG were observed in the Perceptual Discrimination task. These findings illuminate the contrasting functions of the dorsal and ventral visual streams, to support rapid shifts of attention in response to contextual landmarks, and conscious discrimination, respectively. Copyright © 2017 Elsevier Ltd. All rights reserved.

Proxy functions for turbulent transport optimization of stellarators

NASA Astrophysics Data System (ADS)

Rorvig, Mordechai; Hegna, Chris; Mynick, Harry; Xanthopoulos, Pavlos

2012-10-01

The design freedom of toroidal confinement shaping suggests the possibility of optimizing the magnetic geometry for turbulent transport, particularly in stellarators. The framework for implementing such an optimization was recently established [1] using a proxy function as a measure of the ITG induced turbulent transport associated with a given geometry. Working in the framework of local 3-D equilibrium [2], we investigate the theory and implications of such proxy functions by analyzing the linear instability dependence on curvature and local shear, and the associated quasilinear transport estimates. Simple analytic models suggest the beneficial effect of local shear enters through polarization effects, which can be controlled by field torsion in small net current regimes. We test the proxy functions with local, electrostatic gyrokinetics calculations [3] of ITG modes for experimentally motivated local 3-D equilibria.[4pt] [1] H. E. Mynick, N. Pomphrey, and P. Xanthopoulos, Phys. Rev. Lett. 105, 095004 (2010).[0pt] [2] C. C. Hegna, Physics of Plasmas 7, 3921 (2000).[0pt] [3] F. Jenko, W. Dorland, M. Kotschenreuther, and B. N. Rogers, Physical Review Letters 7, 1904 (2000).

Effects of ULF waves on local and global energetic particles: Particle energy and species dependences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, L. Y.; Yu, J.; Cao, J. B.

After 06:13 UT on 24 August 2005, an interplanetary shock triggers large-amplitude ultralow-frequency (ULF) waves (|δB| ≥ 15 nT) in the Pc4–Pc5 wave band (1.6–9 mHz) near the noon geosynchronous orbit (6.6 RE). The local and global effects of ULF waves on energetic particles are observed by five Los Alamos National Laboratory satellites at different magnetic local times. The large-amplitude ULF waves cause the synchronous oscillations of energetic electrons and protons (≥75 keV) at the noon geosynchronous orbit. When the energetic particles have a negative phase space density radial gradient, they undergo rapid outward radial diffusion and loss in themore » wave activity region. In the particle drift paths without strong ULF waves, only the rapidly drifting energetic electrons (≥225 keV) display energy-dispersive oscillations and flux decays, whereas the slowly drifting electrons (<225 keV) and protons (75–400 keV) have no ULF oscillation and loss feature. When the dayside magnetopause is compressed to the geosynchronous orbit, most of energetic electrons and protons are rapidly lost because of open drift trajectories. Furthermore, the global and multicomposition particle measurements demonstrate that the effect of ULF waves on nonlocal particle flux depends on the particle energy and species, whereas magnetopause shadowing effect is independent of the energetic particle species. For the rapidly drifting outer radiation belt particles (≥225 keV), nonlocal particle loss/acceleration processes could also change their fluxes in the entire drift trajectory in the absence of “ Dst effect” and substorm injection.« less

Effects of ULF waves on local and global energetic particles: Particle energy and species dependences

DOE PAGES

Li, L. Y.; Yu, J.; Cao, J. B.; ...

2016-11-05

After 06:13 UT on 24 August 2005, an interplanetary shock triggers large-amplitude ultralow-frequency (ULF) waves (|δB| ≥ 15 nT) in the Pc4–Pc5 wave band (1.6–9 mHz) near the noon geosynchronous orbit (6.6 RE). The local and global effects of ULF waves on energetic particles are observed by five Los Alamos National Laboratory satellites at different magnetic local times. The large-amplitude ULF waves cause the synchronous oscillations of energetic electrons and protons (≥75 keV) at the noon geosynchronous orbit. When the energetic particles have a negative phase space density radial gradient, they undergo rapid outward radial diffusion and loss in themore » wave activity region. In the particle drift paths without strong ULF waves, only the rapidly drifting energetic electrons (≥225 keV) display energy-dispersive oscillations and flux decays, whereas the slowly drifting electrons (<225 keV) and protons (75–400 keV) have no ULF oscillation and loss feature. When the dayside magnetopause is compressed to the geosynchronous orbit, most of energetic electrons and protons are rapidly lost because of open drift trajectories. Furthermore, the global and multicomposition particle measurements demonstrate that the effect of ULF waves on nonlocal particle flux depends on the particle energy and species, whereas magnetopause shadowing effect is independent of the energetic particle species. For the rapidly drifting outer radiation belt particles (≥225 keV), nonlocal particle loss/acceleration processes could also change their fluxes in the entire drift trajectory in the absence of “ Dst effect” and substorm injection.« less

[On the Way to Culture-Sensitive Patient Information Materials: Results of a Focus Group Study].

PubMed

Ries, Zivile; Frank, Fabian; Bermejo, Isaac; Kalaitsidou, Chariklia; Zill, Jördis; Dirmaier, Jörg; Härter, Martin; Bengel, Jürgen; Hölzel, Lars

2018-06-01

This study was part of a double-blind randomised controlled trial aimed to evaluate the effects of culture-sensitive patient information materials (PIM) compared with standard translated material. The study aimed to obtain the data for the development of culture sensitive PIM about unipolar depression for the 4 largest migrant groups in Germany (Turkish, Polish, Russian and Italian migration background). A qualitative study using 4 manual-based focus groups (FG), one for each migrant group, with 29 participants (9 with a Turkish (TüG), 8 with a Polish (PoG), 5 with a Russian (RuG) and 7 with an Italian (ItG) migration background) was conducted. The discussions were recorded, transcribed and analyzed using qualitative content analysis. 7 categories were identified. For the (1.) development of a good culture-sensitive PIM an easy language, a clear structure, an assessable extent of information and the avoidance of stereotypes were highlighted cross-culturally in all four FG. RuG and PoG had the largest (2.) lack of information about the German health care system. Concerning the (3.) illness perception RuG named problems with recognizing and understanding depression. PoG, RuG and TüG thematized (4.) feared consequences of the illness and of professional helpseeking. ItG, PoG, RuG had fears concerning (5.) psychotropic drugs as a result from insufficient knowledge about medication. For (6.) doctor-patient relationship cultural specifics were identified in RuG and TüG and for (7.) migration or culture specific reasons for depression in RuG, ItG and TüG. Although the identified categories were relevant for all or for the majority of migrant groups, for most categories specific cultural aspects were discovered. These findings show the importance of a culture sensitive adaptation of PIM. © Georg Thieme Verlag KG Stuttgart · New York.

Tune-stabilized, non-scaling, fixed-field, alternating gradient accelerator

DOEpatents

Johnstone, Carol J [Warrenville, IL

2011-02-01

A FFAG is a particle accelerator having turning magnets with a linear field gradient for confinement and a large edge angle to compensate for acceleration. FODO cells contain focus magnets and defocus magnets that are specified by a number of parameters. A set of seven equations, called the FFAG equations relate the parameters to one another. A set of constraints, call the FFAG constraints, constrain the FFAG equations. Selecting a few parameters, such as injection momentum, extraction momentum, and drift distance reduces the number of unknown parameters to seven. Seven equations with seven unknowns can be solved to yield the values for all the parameters and to thereby fully specify a FFAG.

Annual sediment flux estimates in a tidal strait using surrogate measurements

USGS Publications Warehouse

Ganju, N.K.; Schoellhamer, D.H.

2006-01-01

Annual suspended-sediment flux estimates through Carquinez Strait (the seaward boundary of Suisun Bay, California) are provided based on surrogate measurements for advective, dispersive, and Stokes drift flux. The surrogates are landward watershed discharge, suspended-sediment concentration at one location in the Strait, and the longitudinal salinity gradient. The first two surrogates substitute for tidally averaged discharge and velocity-weighted suspended-sediment concentration in the Strait, thereby providing advective flux estimates, while Stokes drift is estimated with suspended-sediment concentration alone. Dispersive flux is estimated using the product of longitudinal salinity gradient and the root-mean-square value of velocity-weighted suspended-sediment concentration as an added surrogate variable. Cross-sectional measurements validated the use of surrogates during the monitoring period. During high freshwater flow advective and dispersive flux were in the seaward direction, while landward dispersive flux dominated and advective flux approached zero during low freshwater flow. Stokes drift flux was consistently in the landward direction. Wetter than average years led to net export from Suisun Bay, while dry years led to net sediment import. Relatively low watershed sediment fluxes to Suisun Bay contribute to net export during the wet season, while gravitational circulation in Carquinez Strait and higher suspended-sediment concentrations in San Pablo Bay (seaward end of Carquinez Strait) are responsible for the net import of sediment during the dry season. Annual predictions of suspended-sediment fluxes, using these methods, will allow for a sediment budget for Suisun Bay, which has implications for marsh restoration and nutrient/contaminant transport. These methods also provide a general framework for estimating sediment fluxes in estuarine environments, where temporal and spatial variability of transport are large. ?? 2006 Elsevier Ltd. All rights reserved.

Collisionless kinetic theory of oblique tearing instabilities

DOE PAGES

Baalrud, S. D.; Bhattacharjee, A.; Daughton, W.

2018-02-15

The linear dispersion relation for collisionless kinetic tearing instabilities is calculated for the Harris equilibrium. In contrast to the conventional 2D geometry, which considers only modes at the center of the current sheet, modes can span the current sheet in 3D. Modes at each resonant surface have a unique angle with respect to the guide field direction. Both kinetic simulations and numerical eigenmode solutions of the linearized Vlasov-Maxwell equations have recently revealed that standard analytic theories vastly overestimate the growth rate of oblique modes. In this paper, we find that this stabilization is associated with the density-gradient-driven diamagnetic drift. Themore » analytic theories miss this drift stabilization because the inner tearing layer broadens at oblique angles sufficiently far that the assumption of scale separation between the inner and outer regions of boundary-layer theory breaks down. The dispersion relation obtained by numerically solving a single second order differential equation is found to approximately capture the drift stabilization predicted by solutions of the full integro-differential eigenvalue problem. Finally, a simple analytic estimate for the stability criterion is provided.« less

Collisionless kinetic theory of oblique tearing instabilities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baalrud, S. D.; Bhattacharjee, A.; Daughton, W.

The linear dispersion relation for collisionless kinetic tearing instabilities is calculated for the Harris equilibrium. In contrast to the conventional 2D geometry, which considers only modes at the center of the current sheet, modes can span the current sheet in 3D. Modes at each resonant surface have a unique angle with respect to the guide field direction. Both kinetic simulations and numerical eigenmode solutions of the linearized Vlasov-Maxwell equations have recently revealed that standard analytic theories vastly overestimate the growth rate of oblique modes. In this paper, we find that this stabilization is associated with the density-gradient-driven diamagnetic drift. Themore » analytic theories miss this drift stabilization because the inner tearing layer broadens at oblique angles sufficiently far that the assumption of scale separation between the inner and outer regions of boundary-layer theory breaks down. The dispersion relation obtained by numerically solving a single second order differential equation is found to approximately capture the drift stabilization predicted by solutions of the full integro-differential eigenvalue problem. Finally, a simple analytic estimate for the stability criterion is provided.« less

Collisionless kinetic theory of oblique tearing instabilities

NASA Astrophysics Data System (ADS)

Baalrud, S. D.; Bhattacharjee, A.; Daughton, W.

2018-02-01

The linear dispersion relation for collisionless kinetic tearing instabilities is calculated for the Harris equilibrium. In contrast to the conventional 2D geometry, which considers only modes at the center of the current sheet, modes can span the current sheet in 3D. Modes at each resonant surface have a unique angle with respect to the guide field direction. Both kinetic simulations and numerical eigenmode solutions of the linearized Vlasov-Maxwell equations have recently revealed that standard analytic theories vastly overestimate the growth rate of oblique modes. We find that this stabilization is associated with the density-gradient-driven diamagnetic drift. The analytic theories miss this drift stabilization because the inner tearing layer broadens at oblique angles sufficiently far that the assumption of scale separation between the inner and outer regions of boundary-layer theory breaks down. The dispersion relation obtained by numerically solving a single second order differential equation is found to approximately capture the drift stabilization predicted by solutions of the full integro-differential eigenvalue problem. A simple analytic estimate for the stability criterion is provided.

Geomagnetic Field Distortion by a Solar Stream as a Mechanism for the Production of Polar Aurora and Electrojets

NASA Technical Reports Server (NTRS)

Kern, J. W.

1961-01-01

This paper describes a mechanism for charge separation in the geomagnetically trapped radiation which may account for some observed phenomena associated with the polar aurora and the electrojet current systems. The following development is proposed: given that there exist eastward or westward longitudinal gradients in the geomagnetic field resulting from distortion of the geomagnetic field by solar streams, if the trapped radiation is adiabatic in character, radial drift separation of positive and negative charged particles must occur. It follows that, for bounded or irregular distributions of plasma number density in such an adiabatic - drift region, electric fields will arise. The origin of such electric fields will not arrest the drift separation of the charged particles, but will contribute to exponential growth of irregularities in the trapped plasma density. An adiabatic acceleration mechanism is described, which is based on incorporating the electrostatic energy of the particle in the energy function for the particle. Direct consequences of polarization of the geomagnetically trapped radiation will be the polar electrojet current systems and the polar aurora.

Sheared-flow induced confinement transition in a linear magnetized plasma

NASA Astrophysics Data System (ADS)

Zhou, S.; Heidbrink, W. W.; Boehmer, H.; McWilliams, R.; Carter, T. A.; Vincena, S.; Friedman, B.; Schaffner, D.

2012-01-01

A magnetized plasma cylinder (12 cm in diameter) is induced by an annular shape obstacle at the Large Plasma Device [W. Gekelman, H. Pfister, Z. Lucky, J. Bamber, D. Leneman, and J. Maggs, Rev. Sci. Instrum. 62, 2875 (1991)]. Sheared azimuthal flow is driven at the edge of the plasma cylinder through edge biasing. Strong fluctuations of density and potential (δn /n~eδφ/kTe~0.5) are observed at the plasma edge, accompanied by a large density gradient (Ln=|∇lnn |-1~2cm) and shearing rate (γ ~300kHz). Edge turbulence and cross-field transport are modified by changing the bias voltage (Vbias) on the obstacle and the axial magnetic field (Bz) strength. In cases with low Vbias and large Bz, improved plasma confinement is observed, along with steeper edge density gradients. The radially sheared flow induced by E ×B drift dramatically changes the cross-phase between density and potential fluctuations, which causes the wave-induced particle flux to reverse its direction across the shear layer. In cases with higher bias voltage or smaller Bz, large radial transport and rapid depletion of the central plasma density are observed. Two-dimensional cross-correlation measurement shows that a mode with azimuthal mode number m =1 and large radial correlation length dominates the outward transport in these cases. Linear analysis based on a two-fluid Braginskii model suggests that the fluctuations are driven by both density gradient (drift wave like) and flow shear (Kelvin-Helmholtz like) at the plasma edge.

Properties of two-fluid flowing equilibria observed in double-pulsing coaxial helicity injection on HIST

NASA Astrophysics Data System (ADS)

Kanki, T.; Nagata, M.

2013-10-01

Multi-pulsing coaxial helicity injection (M-CHI) method which aims to achieve both quasi-steady sustainment and good confinement has been proposed as a refluxing scenario of the CHI. To explore the usefulness of the M-CHI for spherical torus (ST) configurations, the double-pulsing operations have been carried out in the HIST, verifying the flux amplification and the formation of the closed flux surfaces after the second CHI pulse. The purpose of this study is to investigate the properties of the magnetic field and plasma flow structures during the sustainment by comparing the results of plasma flow, density, and magnetic fields measurements with those of two-fluid equilibrium calculations. The two-fluid flowing equilibrium model which is described by a pair of generalized Grad-Shafranov equations for ion and electron surface variables and Bernoulli equations for density is applied to reconstruct the ST configuration with poloidal flow shear observed in the HIST. Due to the negative steep density gradient in high field side, the toroidal field has a diamagnetic profile (volume average beta, < β > = 68 %) in the central open flux column region. The ion flow velocity with strong flow shear from the separatrix in the inboard side to the core region is the opposite direction to the electron flow velocity due to the diamagentic drift through the density gradient. The electric field is relatively small in the whole region, and thus the Lorentz force nearly balances with the two-fluid effect which is particularly significant in a region with the steep density gradient due to the ion and electron diamagnetic drifts.

Development of a vector-tensor system to measure the absolute magnetic flux density and its gradient in magnetically shielded rooms.

PubMed

Voigt, J; Knappe-Grüneberg, S; Gutkelch, D; Haueisen, J; Neuber, S; Schnabel, A; Burghoff, M

2015-05-01

Several experiments in fundamental physics demand an environment of very low, homogeneous, and stable magnetic fields. For the magnetic characterization of such environments, we present a portable SQUID system that measures the absolute magnetic flux density vector and the gradient tensor. This vector-tensor system contains 13 integrated low-critical temperature (LTc) superconducting quantum interference devices (SQUIDs) inside a small cylindrical liquid helium Dewar with a height of 31 cm and 37 cm in diameter. The achievable resolution depends on the flux density of the field under investigation and its temporal drift. Inside a seven-layer mu-metal shield, an accuracy better than ±23 pT for the components of the static magnetic field vector and ±2 pT/cm for each of the nine components of the gradient tensor is reached by using the shifting method.

Development of a vector-tensor system to measure the absolute magnetic flux density and its gradient in magnetically shielded rooms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Voigt, J.; Knappe-Grüneberg, S.; Gutkelch, D.

2015-05-15

Several experiments in fundamental physics demand an environment of very low, homogeneous, and stable magnetic fields. For the magnetic characterization of such environments, we present a portable SQUID system that measures the absolute magnetic flux density vector and the gradient tensor. This vector-tensor system contains 13 integrated low-critical temperature (LTc) superconducting quantum interference devices (SQUIDs) inside a small cylindrical liquid helium Dewar with a height of 31 cm and 37 cm in diameter. The achievable resolution depends on the flux density of the field under investigation and its temporal drift. Inside a seven-layer mu-metal shield, an accuracy better than ±23more » pT for the components of the static magnetic field vector and ±2 pT/cm for each of the nine components of the gradient tensor is reached by using the shifting method.« less

Models of SOL transport and their relation to scaling of the divertor heat flux width in DIII-D

DOE PAGES

Makowski, M. A.; Lasnier, C. J.; Leonard, A. W.; ...

2014-10-06

Strong support for the critical pressure gradient model for the heat flux width has been obtained, in that the measured separatrix pressure gradient lies below and scales similarly to the pressure gradient limit obtained from the ideal, infinite-n stability codes, BALOO and 2DX, in all cases that have been examined. Predictions of a heuristic drift model for the heat flux width are also in qualitative agreement with the measurements. We obtained these results by using an improved high rep-rate and higher edge spatial resolution Thomson scattering system on DIII-D to measure the upstream electron temperature and density profiles. In ordermore » to compare theory and experiment, profiles of density, temperature, and pressure for both electrons and ions are needed as well values of these quantitities at the separatrix. We also developed a simple method to identify a proxy for the separatrix.« less

26 CFR 1.642(g)-2 - Deductions included.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 26 Internal Revenue 8 2014-04-01 2014-04-01 false Deductions included. 1.642(g)-2 Section 1.642(g... (CONTINUED) INCOME TAXES (CONTINUED) Estates, Trusts, and Beneficiaries § 1.642(g)-2 Deductions included. It...(g) is applicable be treated in the same way. One deduction or portion of a deduction may be allowed...

26 CFR 1.642(g)-2 - Deductions included.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 26 Internal Revenue 8 2013-04-01 2013-04-01 false Deductions included. 1.642(g)-2 Section 1.642(g... (CONTINUED) INCOME TAXES (CONTINUED) Estates, Trusts, and Beneficiaries § 1.642(g)-2 Deductions included. It...(g) is applicable be treated in the same way. One deduction or portion of a deduction may be allowed...

26 CFR 1.642(g)-2 - Deductions included.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 26 Internal Revenue 8 2011-04-01 2011-04-01 false Deductions included. 1.642(g)-2 Section 1.642(g... (CONTINUED) INCOME TAXES (CONTINUED) Estates, Trusts, and Beneficiaries § 1.642(g)-2 Deductions included. It...(g) is applicable be treated in the same way. One deduction or portion of a deduction may be allowed...

26 CFR 1.642(g)-2 - Deductions included.

Code of Federal Regulations, 2012 CFR

2012-04-01

... 26 Internal Revenue 8 2012-04-01 2012-04-01 false Deductions included. 1.642(g)-2 Section 1.642(g... (CONTINUED) INCOME TAXES (CONTINUED) Estates, Trusts, and Beneficiaries § 1.642(g)-2 Deductions included. It...(g) is applicable be treated in the same way. One deduction or portion of a deduction may be allowed...

Torques on the gyro in the gyro relativity experiment

NASA Technical Reports Server (NTRS)

Eby, P.

1982-01-01

Whether the Newtonian drifts on the gyro as conceived in the gyro relativity experiment can be reduced to a level such that the geodetic and motional earth precessions of general relativity can be detected is addressed. Torques due to gas drag, electrical charging, mass unbalance, cosmic ray impacts, magnetic fields, and gravity gradients in a inclined orbit are calculated and discussed. The conditions necessary for the required accuracy are given.

pH-Taxis of Biohybrid Microsystems

NASA Astrophysics Data System (ADS)

Zhuang, Jiang; Wright Carlsen, Rika; Sitti, Metin

2015-06-01

The last decade has seen an increasing number of studies developing bacteria and other cell-integrated biohybrid microsystems. However, the highly stochastic motion of these microsystems severely limits their potential use. Here, we present a method that exploits the pH sensing of flagellated bacteria to realize robust drift control of multi-bacteria propelled microrobots. Under three specifically configured pH gradients, we demonstrate that the microrobots exhibit both unidirectional and bidirectional pH-tactic behaviors, which are also observed in free-swimming bacteria. From trajectory analysis, we find that the swimming direction and speed biases are two major factors that contribute to their tactic drift motion. The motion analysis of microrobots also sheds light on the propulsion dynamics of the flagellated bacteria as bioactuators. It is expected that similar driving mechanisms are shared among pH-taxis, chemotaxis, and thermotaxis. By identifying the mechanism that drives the tactic behavior of bacteria-propelled microsystems, this study opens up an avenue towards improving the control of biohybrid microsystems. Furthermore, assuming that it is possible to tune the preferred pH of bioactuators by genetic engineering, these biohybrid microsystems could potentially be applied to sense the pH gradient induced by cancerous cells in stagnant fluids inside human body and realize targeted drug delivery.

Multi-gradient echo MR thermometry for monitoring of the near-field area during MR-guided high intensity focused ultrasound heating

NASA Astrophysics Data System (ADS)

Lam, Mie K.; de Greef, Martijn; Bouwman, Job G.; Moonen, Chrit T. W.; Viergever, Max A.; Bartels, Lambertus W.

2015-10-01

The multi-gradient echo MR thermometry (MGE MRT) method is proposed to use at the interface of the muscle and fat layers found in the abdominal wall, to monitor MR-HIFU heating. As MGE MRT uses fat as a reference, it is field-drift corrected. Relative temperature maps were reconstructed by subtracting absolute temperature maps. Because the absolute temperature maps are reconstructed of individual scans, MGE MRT provides the flexibility of interleaved mapping of temperature changes between two arbitrary time points. The method’s performance was assessed in an ex vivo water bath experiment. An ex vivo HIFU experiment was performed to show the method’s ability to monitor heating of consecutive HIFU sonications and to estimate cooling time constants, in the presence of field drift. The interleaved use between scans of a clinical protocol was demonstrated in vivo in a patient during a clinical uterine fibroid treatment. The relative temperature measurements were accurate (mean absolute error 0.3 °C) and provided excellent visualization of the heating of consecutive HIFU sonications. Maps were reconstructed of estimated cooling time constants and mean ROI values could be well explained by the applied heating pattern. Heating upon HIFU sonication and subsequent cooling could be observed in the in vivo demonstration.

Impact on Space-Based Navigation Systems of Large Magnetic Storm-Driven Nighttime Flows in the Mid-latitude Ionosphere

NASA Astrophysics Data System (ADS)

Basu, S.; Makela, J.; Doherty, P.; Wright, J.; Coster, A.

2008-05-01

Multi-technique ground and space-based studies conducted during the intense magnetic storm of 7-8 November 2004 yielded a hitherto little-recognized means of impacting space-based navigation systems such as the Federal Aviation Administration's Wide Area Augmentation System (WAAS) that operates in the North American sector. During this superstorm, no appreciable storm-enhanced density gradients were observed. Rather the mid-latitude region was enveloped by the auroral oval and the ionospheric trough within which the sub auroral polarization stream (SAPS) was confined during the local dusk to nighttime hours. This shows that such processes can partially disable GPS-based navigation systems for many hours even in the absence of appreciable TEC gradients, provided an intense flow channel is present in the ionosphere during nighttime hours, as revealed by DMSP and Dynasonde drift results. The competing effects of irregularity amplitude ΔN/N, the background F-region density and the magnitude of SAPS or auroral convection are discussed in establishing the extent of the region of impact on the WAAS system. In order to provide inputs to operational space weather models, the current GPS network used for measuring the total electron content in North America and elsewhere should be augmented by instruments that can measure ionospheric drifts.

Cross-tail current, field-aligned current, and B(y)

NASA Technical Reports Server (NTRS)

Kaufmann, Richard L.; Lu, Chen; Larson, Douglas J.

1994-01-01

Orbits of individual charged particles were traced in a one-dimensional magnetic field model that included a uniform cross-tail component B(sub yo). The effects of B(sub yo) on the cross-tail current distribution j(sub y)(z), the average cross-tail drift velocity(nu(sub y)z), and the average pitch angle change(delta alpha) experienced during current sheet encounters were calculated. The addition of a B(sub yo) that exceeded several tenths of one nanotesla completely eliminated all resonance effects for odd-N orbits. An odd-N resonance involves ions that enter and exit the current sheet on the same side. Pitch angles of nearly all such ions changed substantially during a typical current sheet interaction, and there was no region of large cross-tail drift velocity in the presence of a modest B(sub yo). the addition of a very large B(sub yo) guide field in the direction that enhances the natural drift produces a large j(y) and small (Delta alpha) for ions with all energies. The addition of a modest B(sub yo) had less effect near even-N resonances. In this case, ions in a small energy range were found to undergo so little change in pitch angle that particles which originated in the ionosphere would pass through the current sheet and return to the conjugate ionosphere. Finally, the cross-tail drift of ions from regions dominated by stochastic orbits to regions dominated by either resonant or guiding center orbits was considered. The ion drift speed changed substantially during such transitions. The accompanying electrons obey the guiding center equations, so electron drift is more uniform. Any difference between gradients in the fluxes associated with electron and ion drifts requires the presence of a Birkeland current in order to maintain charge neutrality. This plasma sheet region therefore serves as a current generator. The analysis predicts that the resulting Birkeland current connects to the lowest altitude equatorial regions in which ions drift to or from a point at which stochastic orbits predominate. The proposed mechanism appears only in analyses that include non-guiding-center effects.

Comparative In Situ Measurements of Plasma Instabilities in the Equatorial and Auroral Electrojets

NASA Technical Reports Server (NTRS)

Pfaff, Robert F.

2008-01-01

This presentation provides a comparison of in situ measurements of plasma instabilities gathered by rocket-borne probes in the equatorial and auroral electrojets. Specifically, using detailed measurements of the DC electric fields, current density, and plasma number density within the unstable daytime equatorial electrojet from Brazil (Guara Campaign) and in the auroral electrojet from Sweden (ERRIS Campaign), we present comparative observations and general conclusions regarding the observed physical properties of Farley-Buneman two-stream waves and large scale, gradient drift waves. The two stream observations reveal coherent-like waves propagating near the E x B direction but at reduced speeds (nearer to the presumed acoustic velocity) with wavelengths of approximately 5-10m in both the equatorial and auroral electrojet, as measured using the spaced-receiver technique. The auroral electrojet data generally shows extensions to shorter wavelengths, in concert with the fact that these waves are driven harder. With respect to gradient-drift driven waves, observations of this instability are much more pronounced in the equatorial electrojet, given the more favorable geometry for growth provided by the vertical gradient and horizontal magnetic field lines. We present new analysis of Guara rocket observations of electric field and plasma density data that reveal considerable structuring in the middle and lower portion of the electrojet (90-105 km) where the ambient plasma density gradient is unstable. Although the electric field amplitudes are largest (approximately 10-15 mV/m) in the zonal direction, considerable structure (approximately 5-10 mV/m) is also observed in the vertical electric field component as well, implying that the dominant large scale waves involve significant vertical interaction and coupling within the narrow altitude range where they are observed. Furthermore, a detailed examination of the phase of the waveforms show that on some, but not all occasions, locally enhanced eastward fields are associated with locally enhanced upwards (polarization) electric fields. The measurements are discussed in terms of theories involving the non-linear evolution and structuring of plasma waves.

Toward an integrated view of ionospheric plasma instabilities: Altitudinal transitions and strong gradient case

NASA Astrophysics Data System (ADS)

Makarevich, Roman A.

2016-04-01

A general dispersion relation is derived that integrates the Farley-Buneman, gradient-drift, and current-convective plasma instabilities (FBI, GDI, and CCI) within the same formalism for an arbitrary altitude, wave propagation vector, and background density gradient. The limiting cases of the FBI/GDI in the E region for nearly field-aligned irregularities, GDI/CCI in the main F region at long wavelengths, and GDI at high altitudes are successfully recovered using analytic analysis. Numerical solutions are found for more general representative cases spanning the entire ionosphere. It is demonstrated that the results are consistent with those obtained using a general FBI/GDI/CCI theory developed previously at and near E region altitudes under most conditions. The most significant differences are obtained for strong gradients (scale lengths of 100 m) at high altitudes such as those that may occur during highly structured soft particle precipitation events. It is shown that the strong gradient case is dominated by inertial effects and, for some scales, surprisingly strong additional damping due to higher-order gradient terms. The growth rate behavior is examined with a particular focus on the range of wave propagations with positive growth (instability cone) and its transitions between altitudinal regions. It is shown that these transitions are largely controlled by the plasma density gradients even when FBI is operational.

Drift turbulence, particle transport, and anomalous dissipation at the reconnecting magnetopause

NASA Astrophysics Data System (ADS)

Le, A.; Daughton, W.; Ohia, O.; Chen, L.-J.; Liu, Y.-H.; Wang, S.; Nystrom, W. D.; Bird, R.

2018-06-01

Using fully kinetic 3D simulations, the reconnection dynamics of asymmetric current sheets are examined at the Earth's magnetopause. The plasma parameters are selected to model MMS magnetopause diffusion region crossings with guide fields of 0.1, 0.4, and 1 of the reconnecting magnetosheath field. In each case, strong drift-wave fluctuations are observed in the lower-hybrid frequency range at the steep density gradient across the magnetospheric separatrix. These fluctuations give rise to cross-field electron particle transport. In addition, this turbulent mixing leads to significantly enhanced electron parallel heating in comparison to 2D simulations. We study three different methods of quantifying the anomalous dissipation produced by the drift fluctuations, based on spatial averaging, temporal averaging, and temporal averaging followed by integrating along magnetic field lines. A comparison of different methods reveals complications in identifying and measuring the anomalous dissipation. Nevertheless, the anomalous dissipation from short wavelength drift fluctuations appears weak for each case, and the reconnection rates observed in 3D are nearly the same as in 2D models. The 3D simulations feature a number of interesting new features that are consistent with recent MMS observations, including cold beams of magnetosheath electrons that penetrate into the hotter magnetospheric inflow, the related observation of decreasing temperature in regions of increasing total density, and an effective turbulent diffusion coefficient that agrees with predictions from quasi-linear theory.

Charged particle motions in the distended magnetospheres of Jupiter and Saturn

NASA Technical Reports Server (NTRS)

Birmingham, T. J.

1982-01-01

Charged particle motion in the guiding center approximation is analyzed for models of the Jovian and Saturnian magnetospheric magnetic fields based on Voyager magnetometer observations. Field lines are traced and exhibit the distention which arises from azimuthally circulating magnetospheric currents. The spatial dependencies of the guiding center bounce period and azimuthal drift rate are investigated for the model fields. Non-dipolar effects in the gradient-curvature drift rate are most important at the equator and affect particles with all mirror latitudes. The effect is a factor of 10-15 for Jupiter with its strong magnetodisc current and 1-2 for Saturn with its more moderate ring current. Limits of adiabaticity, where particle gyroradii become comparable with magnetic scale lengths, are discussed and are shown to occur at quite modest kinetic energies for protons and heavier ions.

Simulation Analysis of Zero Mean Flow Edge Turbulence in LAPD

NASA Astrophysics Data System (ADS)

Friedman, Brett Cory

I model, simulate, and analyze the turbulence in a particular experiment on the Large Plasma Device (LAPD) at UCLA. The experiment, conducted by Schaffner et al. [D. Schaffner et al., Phys. Rev. Lett. 109, 135002 (2012)], nulls out the intrinsic mean flow in LAPD by limiter biasing. The model that I use in the simulation is an electrostatic reduced Braginskii two-fluid model that describes the time evolution of density, electron temperature, electrostatic potential, and parallel electron velocity fluctuations in the edge region of LAPD. The spatial domain is annular, encompassing the radial coordinates over which a significant equilibrium density gradient exists. My model breaks the independent variables in the equations into time-independent equilibrium parts and time-dependent fluctuating parts, and I use experimentally obtained values as input for the equilibrium parts. After an initial exponential growth period due to a linear drift wave instability, the fluctuations saturate and the frequency and azimuthal wavenumber spectra become broadband with no visible coherent peaks, at which point the fluctuations become turbulent. The turbulence develops intermittent pressure and flow filamentary structures that grow and dissipate, but look much different than the unstable linear drift waves, primarily in the extremely long axial wavelengths that the filaments possess. An energy dynamics analysis that I derive reveals the mechanism that drives these structures. The long k|| ˜ 0 intermittent potential filaments convect equilibrium density across the equilibrium density gradient, setting up local density filaments. These density filaments, also with k || ˜ 0, produce azimuthal density gradients, which drive radially propagating secondary drift waves. These finite k|| drift waves nonlinearly couple to one another and reinforce the original convective filament, allowing the process to bootstrap itself. The growth of these structures is by nonlinear instability because they require a finite amplitude to start, and they require nonlinear terms in the equations to sustain their growth. The reason why k|| ˜ 0 structures can grow and support themselves in a dynamical system with no k|| = 0 linear instability is because the linear eigenmodes of the system are nonorthogonal. Nonorthogonal eigenmodes that individually decay under linear dynamics can transiently inject energy into the system, allowing for instability. The instability, however, can only occur when the fluctuations have a finite starting amplitude, and nonlinearities are available to mix energy among eigenmodes. Finally, I attempt to figure out how many effective degrees of freedom control the turbulence to determine whether it is stochastic or deterministic. Using two different methods - permutation entropy analysis by means of time delay trajectory reconstruction and Proper Orthogonal Decomposition - I determine that more than a few degrees of freedom, possibly even dozens or hundreds, are all active. The turbulence, while not stochastic, is not a manifestation of low-dimensional chaos - it is high-dimensional.

Time-resolved lateral spin-caloric transport of optically generated spin packets in n-GaAs

NASA Astrophysics Data System (ADS)

Göbbels, Stefan; Güntherodt, Gernot; Beschoten, Bernd

2018-05-01

We report on lateral spin-caloric transport (LSCT) of electron spin packets which are optically generated by ps laser pulses in the non-magnetic semiconductor n-GaAs at K. LSCT is driven by a local temperature gradient induced by an additional cw heating laser. The spatio-temporal evolution of the spin packets is probed using time-resolved Faraday rotation. We demonstrate that the local temperature-gradient induced spin diffusion is solely driven by a non-equilibrium hot spin distribution, i.e. without involvement of phonon drag effects. Additional electric field-driven spin drift experiments are used to verify directly the validity of the non-classical Einstein relation for moderately doped semiconductors at low temperatures for near band-gap excitation.

Analysis of non-phthalates plasticizers on porous graphitic carbon by supercritical fluid chromatography using evaporative light scattering detection.

PubMed

Vaccher, Claude; Decaudin, Bertrand; Sautou, Valérie; Lecoeur, Marie

2014-09-12

The analysis of several plasticizers, widely used in the production of medical devices, was investigated on porous graphitic carbon (PGC) stationary phase in supercritical fluid chromatography (SFC) with an evaporative light scattering detector (ELSD). Due to strong interaction of compounds with the PGC support, solvents of strong eluotropic strength were added to the CO2 supercritical fluid. The effect of alkyl chain (pentane, hexane, heptane) and chlorinated (CH2Cl2, CHCl3, CCl4) solvents was studied on the retention and on the ELSD detection of plasticizers. A co-solvent mixture composed of CHCl3/heptane, eluted under gradient mode, allowed a significant improvement of the ELSD response compared to the use of each solvent individually. Then, a central composite design (CCD) was implemented to optimize both the separation and the detection of plasticizers. The parameters involved were the outlet pressure, the gradient slope, the co-solvent composition and the drift tube temperature of the ELSD. After optimization, baseline separation of plasticizers was achieved in 7min and best signal-to-noise ratios were obtained with outlet pressure and drift tube temperature of ELSD set at 200bar and 31°C, respectively. The co-solvent mixture was also composed of CHCl3/heptane (35/65 v/v) and a gradient from 15 to 60% of co-solvent in 2.2min was employed. The results demonstrated that CCD is a powerful tool for the optimization of SFC/ELSD method and the response surface model analysis can provide statistical understandings of the significant factors required to achieve optimal separation and ELSD sensitivity. Copyright © 2014 Elsevier B.V. All rights reserved.

High resolution T2(*)-weighted Magnetic Resonance Imaging at 3 Tesla using PROPELLER-EPI.

PubMed

Krämer, Martin; Reichenbach, Jürgen R

2014-05-01

We report the application of PROPELLER-EPI for high resolution T2(*)-weighted imaging with sub-millimeter in-plane resolution on a clinical 3 Tesla scanner. Periodically rotated blades of a long-axis PROPELLER-EPI sequence were acquired with fast gradient echo readout and acquisition matrix of 320 × 50 per blade. Images were reconstructed by using 2D-gridding, phase and geometric distortion correction and compensation of resonance frequency drifts that occurred during extended measurements. To characterize these resonance frequency offsets, short FID calibration measurements were added to the PROPELLER-EPI sequence. Functional PROPELLER-EPI was performed with volunteers using a simple block design of right handed finger tapping. Results indicate that PROPELLER-EPI can be employed for fast, high resolution T2(*)-weighted imaging provided geometric distortions and possible resonance frequency drifts are properly corrected. Even small resonance frequency drifts below 10 Hz as well as non-corrected geometric distortions degraded image quality substantially. In the initial fMRI experiment image quality and signal-to-noise ratio was sufficient for obtaining high resolution functional activation maps. Copyright © 2014. Published by Elsevier GmbH.

Fokker-Planck description for the queue dynamics of large tick stocks.

PubMed

Garèche, A; Disdier, G; Kockelkoren, J; Bouchaud, J-P

2013-09-01

Motivated by empirical data, we develop a statistical description of the queue dynamics for large tick assets based on a two-dimensional Fokker-Planck (diffusion) equation. Our description explicitly includes state dependence, i.e., the fact that the drift and diffusion depend on the volume present on both sides of the spread. "Jump" events, corresponding to sudden changes of the best limit price, must also be included as birth-death terms in the Fokker-Planck equation. All quantities involved in the equation can be calibrated using high-frequency data on the best quotes. One of our central findings is that the dynamical process is approximately scale invariant, i.e., the only relevant variable is the ratio of the current volume in the queue to its average value. While the latter shows intraday seasonalities and strong variability across stocks and time periods, the dynamics of the rescaled volumes is universal. In terms of rescaled volumes, we found that the drift has a complex two-dimensional structure, which is a sum of a gradient contribution and a rotational contribution, both stable across stocks and time. This drift term is entirely responsible for the dynamical correlations between the ask queue and the bid queue.

Particle-in-cell simulation study of a lower-hybrid shock

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dieckmann, M. E.; Ynnerman, A.; Sarri, G.

2016-06-15

The expansion of a magnetized high-pressure plasma into a low-pressure ambient medium is examined with particle-in-cell simulations. The magnetic field points perpendicular to the plasma's expansion direction and binary collisions between particles are absent. The expanding plasma steepens into a quasi-electrostatic shock that is sustained by the lower-hybrid (LH) wave. The ambipolar electric field points in the expansion direction and it induces together with the background magnetic field a fast E cross B drift of electrons. The drifting electrons modify the background magnetic field, resulting in its pile-up by the LH shock. The magnetic pressure gradient force accelerates the ambientmore » ions ahead of the LH shock, reducing the relative velocity between the ambient plasma and the LH shock to about the phase speed of the shocked LH wave, transforming the LH shock into a nonlinear LH wave. The oscillations of the electrostatic potential have a larger amplitude and wavelength in the magnetized plasma than in an unmagnetized one with otherwise identical conditions. The energy loss to the drifting electrons leads to a noticeable slowdown of the LH shock compared to that in an unmagnetized plasma.« less

Fokker-Planck description for the queue dynamics of large tick stocks

NASA Astrophysics Data System (ADS)

Garèche, A.; Disdier, G.; Kockelkoren, J.; Bouchaud, J.-P.

2013-09-01

Motivated by empirical data, we develop a statistical description of the queue dynamics for large tick assets based on a two-dimensional Fokker-Planck (diffusion) equation. Our description explicitly includes state dependence, i.e., the fact that the drift and diffusion depend on the volume present on both sides of the spread. “Jump” events, corresponding to sudden changes of the best limit price, must also be included as birth-death terms in the Fokker-Planck equation. All quantities involved in the equation can be calibrated using high-frequency data on the best quotes. One of our central findings is that the dynamical process is approximately scale invariant, i.e., the only relevant variable is the ratio of the current volume in the queue to its average value. While the latter shows intraday seasonalities and strong variability across stocks and time periods, the dynamics of the rescaled volumes is universal. In terms of rescaled volumes, we found that the drift has a complex two-dimensional structure, which is a sum of a gradient contribution and a rotational contribution, both stable across stocks and time. This drift term is entirely responsible for the dynamical correlations between the ask queue and the bid queue.

Simultaneous use of camera and probe diagnostics to unambiguously identify and study the dynamics of multiple underlying instabilities during the route to plasma turbulence.

PubMed

Thakur, S C; Brandt, C; Light, A; Cui, L; Gosselin, J J; Tynan, G R

2014-11-01

We use multiple-tip Langmuir probes and fast imaging to unambiguously identify and study the dynamics of underlying instabilities during the controlled route to fully-developed plasma turbulence in a linear magnetized helicon plasma device. Langmuir probes measure radial profiles of electron temperature, plasma density and potential; from which we compute linear growth rates of instabilities, cross-phase between density and potential fluctuations, Reynold's stress, particle flux, vorticity, time-delay estimated velocity, etc. Fast imaging complements the 1D probe measurements by providing temporally and spatially resolved 2D details of plasma structures associated with the instabilities. We find that three radially separated plasma instabilities exist simultaneously. Density gradient driven resistive drift waves propagating in the electron diamagnetic drift direction separate the plasma into an edge region dominated by strong, velocity shear driven Kelvin-Helmholtz instabilities and a central core region which shows coherent Rayleigh-Taylor modes propagating in the ion diamagnetic drift direction. The simultaneous, complementary use of both probes and camera was crucial to identify the instabilities and understand the details of the very rich plasma dynamics.

On the origin of the crescent-shaped distributions observed by MMS at the magnetopause

NASA Astrophysics Data System (ADS)

Lapenta, G.; Berchem, J.; Zhou, M.; Walker, R. J.; El-Alaoui, M.; Goldstein, M. L.; Paterson, W. R.; Giles, B. L.; Pollock, C. J.; Russell, C. T.; Strangeway, R. J.; Ergun, R. E.; Khotyaintsev, Y. V.; Torbert, R. B.; Burch, J. L.

2017-02-01

MMS observations recently confirmed that crescent-shaped electron velocity distributions in the plane perpendicular to the magnetic field occur in the electron diffusion region near reconnection sites at Earth's magnetopause. In this paper, we reexamine the origin of the crescent-shaped distributions in the light of our new finding that ions and electrons are drifting in opposite directions when displayed in magnetopause boundary-normal coordinates. Therefore, E × B drifts cannot cause the crescent shapes. We performed a high-resolution multiscale simulation capturing subelectron skin-depth scales. The results suggest that the crescent-shaped distributions are caused by meandering orbits without necessarily requiring any additional processes found at the magnetopause such as the highly asymmetric magnetopause ambipolar electric field. We use an adiabatic Hamiltonian model of particle motion to confirm that conservation of canonical momentum in the presence of magnetic field gradients causes the formation of crescent shapes without invoking asymmetries or the presence of an E × B drift. An important consequence of this finding is that we expect crescent-shaped distributions also to be observed in the magnetotail, a prediction that MMS will soon be able to test.

Construction of a Virtual Scanning Electron Microscope (VSEM)

NASA Technical Reports Server (NTRS)

Fried, Glenn; Grosser, Benjamin

2004-01-01

The Imaging Technology Group (ITG) proposed to develop a Virtual SEM (VSEM) application and supporting materials as the first installed instrument in NASA s Virtual Laboratory Project. The instrument was to be a simulator modeled after an existing SEM, and was to mimic that real instrument as closely as possible. Virtual samples would be developed and provided along with the instrument, which would be written in Java.

SOL effects on the pedestal structure in DIII-D discharges

DOE PAGES

Sontag, Aaron C.; Chen, Xi; Canik, John; ...

2017-05-24

SOLPS analysis explains the differences in pedestal structure associated with different ion ∇B drift directions in DIII-D. Core transport models predict that fusion power scales roughly as the square of the pressure at the top of the pedestal, so understanding the effects that determine pedestal structure in steady-state operational scenarios is important to projecting scenarios developed in DIII-D to ITER and other devices. Both experiments and modeling indicate that scrape off layer (SOL) conditions are important in optimizing the pedestal structure for high-beta steady-state scenarios. The SOLPS code is used to provide interpretive analysis of the pedestal and SOL tomore » examine the nature of flows and fueling on the pedestal structure including the effects of drifts in the fluid model. This analysis shows that flows driven by the ion ∇B drift are outward when this drift is toward the x-point in a single-null divertor configuration (favorable ∇B direction for reduced H-mode power threshold), and inward when the drift is away from the x-point (unfavorable ∇B direction). It is hypothesized that these flows decrease the density gradient in the pedestal in the favorable direction, thereby stabilizing the kinetic ballooning mode (KBM) and increasing the pedestal width. Comparisons of pedestal structures in similarly shaped DIII-D steady-state plasmas confirm this change, showing increased density pedestal width and lower peak density and lower separatrix density with the favorable drift direction. The pedestal temperature is higher in the lower density case, resulting in an increased pedestal pressure, which indicates that the increased particle flux does not significantly degrade energy confinement. Modeling of cases with constant ∇B drift direction but changing between the more open lower divertor and more closed upper divertor show that there is increased fueling inside the pedestal with the more open geometry. As a result, the pedestal fueling rate for both attached and detached cases is always lower with more closed divertor geometry than in any cases with more open geometry.« less

SOL effects on the pedestal structure in DIII-D discharges

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sontag, Aaron C.; Chen, Xi; Canik, John

SOLPS analysis explains the differences in pedestal structure associated with different ion ∇B drift directions in DIII-D. Core transport models predict that fusion power scales roughly as the square of the pressure at the top of the pedestal, so understanding the effects that determine pedestal structure in steady-state operational scenarios is important to projecting scenarios developed in DIII-D to ITER and other devices. Both experiments and modeling indicate that scrape off layer (SOL) conditions are important in optimizing the pedestal structure for high-beta steady-state scenarios. The SOLPS code is used to provide interpretive analysis of the pedestal and SOL tomore » examine the nature of flows and fueling on the pedestal structure including the effects of drifts in the fluid model. This analysis shows that flows driven by the ion ∇B drift are outward when this drift is toward the x-point in a single-null divertor configuration (favorable ∇B direction for reduced H-mode power threshold), and inward when the drift is away from the x-point (unfavorable ∇B direction). It is hypothesized that these flows decrease the density gradient in the pedestal in the favorable direction, thereby stabilizing the kinetic ballooning mode (KBM) and increasing the pedestal width. Comparisons of pedestal structures in similarly shaped DIII-D steady-state plasmas confirm this change, showing increased density pedestal width and lower peak density and lower separatrix density with the favorable drift direction. The pedestal temperature is higher in the lower density case, resulting in an increased pedestal pressure, which indicates that the increased particle flux does not significantly degrade energy confinement. Modeling of cases with constant ∇B drift direction but changing between the more open lower divertor and more closed upper divertor show that there is increased fueling inside the pedestal with the more open geometry. As a result, the pedestal fueling rate for both attached and detached cases is always lower with more closed divertor geometry than in any cases with more open geometry.« less

The PDGFRα-laminin B1-keratin 19 cascade drives tumor progression at the invasive front of human hepatocellular carcinoma

PubMed Central

Govaere, O; Petz, M; Wouters, J; Vandewynckel, Y-P; Scott, E J; Topal, B; Nevens, F; Verslype, C; Anstee, Q M; Van Vlierberghe, H; Mikulits, W; Roskams, T

2017-01-01

Human hepatocellular carcinomas (HCCs) expressing the biliary/hepatic progenitor cell marker keratin 19 (K19) have been linked with a poor prognosis and exhibit an increase in platelet-derived growth factor receptor α (PDGFRα) and laminin beta 1 (LAMB1) expression. PDGFRα has been reported to induce de novo synthesis of LAMB1 protein in a Sjogren syndrome antigen B (La/SSB)-dependent manner in a murine metastasis model. However, the role of this cascade in human HCC remains unclear. This study focused on the functional role of the PDGFRα-La/SSB-LAMB1 pathway and its molecular link to K19 expression in human HCC. In surgical HCC specimens from a cohort of 136 patients, PDGFRα expression correlated with K19 expression, microvascular invasion and metastatic spread. In addition, PDGFRα expression in pre-operative needle biopsy specimens predicted poor overall survival during a 5-year follow-up period. Consecutive histological staining demonstrated that the signaling components of the PDGFRα-La/SSB-LAMB1 pathway were strongly expressed at the invasive front. K19-positive HCC cells displayed high levels of α2β1 integrin (ITG) receptor, both in vitro and in vivo. In vitro activation of PDGFRα signaling triggered the translocation of nuclear La/SSB into the cytoplasm, enhanced the protein synthesis of LAMB1 by activating its internal ribosome entry site, which in turn led to increased secretion of laminin-111. This effect was abrogated by the PDGFRα-specific inhibitor crenolanib. Importantly LAMB1 stimulated ITG-dependent focal adhesion kinase/Src proto-oncogene non-receptor tyrosine kinase signaling. It also promoted the ITG-specific downstream target Rho-associated coiled-coil containing protein kinase 2, induced K19 expression in an autocrine manner, invadopodia formation and cell invasion. Finally, we showed that the knockdown of LAMB1 or K19 in subcutaneous xenograft mouse models resulted in significant loss of cells invading the surrounding stromal tissue and reduced HepG2 colonization into lung and liver after tail vein injection. The PDGFRα-LAMB1 pathway supports tumor progression at the invasive front of human HCC through K19 expression. PMID:28783171

Genetic diversity and population structure in contemporary house sparrow populations along an urbanization gradient

PubMed Central

Vangestel, C; Mergeay, J; Dawson, D A; Callens, T; Vandomme, V; Lens, L

2012-01-01

House sparrow (Passer domesticus) populations have suffered major declines in urban as well as rural areas, while remaining relatively stable in suburban ones. Yet, to date no exhaustive attempt has been made to examine how, and to what extent, spatial variation in population demography is reflected in genetic population structuring along contemporary urbanization gradients. Here we use putatively neutral microsatellite loci to study if and how genetic variation can be partitioned in a hierarchical way among different urbanization classes. Principal coordinate analyses did not support the hypothesis that urban/suburban and rural populations comprise two distinct genetic clusters. Comparison of FST values at different hierarchical scales revealed drift as an important force of population differentiation. Redundancy analyses revealed that genetic structure was strongly affected by both spatial variation and level of urbanization. The results shown here can be used as baseline information for future genetic monitoring programmes and provide additional insights into contemporary house sparrow dynamics along urbanization gradients. PMID:22588131

Genetic diversity and population structure in contemporary house sparrow populations along an urbanization gradient.

PubMed

Vangestel, C; Mergeay, J; Dawson, D A; Callens, T; Vandomme, V; Lens, L

2012-09-01

House sparrow (Passer domesticus) populations have suffered major declines in urban as well as rural areas, while remaining relatively stable in suburban ones. Yet, to date no exhaustive attempt has been made to examine how, and to what extent, spatial variation in population demography is reflected in genetic population structuring along contemporary urbanization gradients. Here we use putatively neutral microsatellite loci to study if and how genetic variation can be partitioned in a hierarchical way among different urbanization classes. Principal coordinate analyses did not support the hypothesis that urban/suburban and rural populations comprise two distinct genetic clusters. Comparison of FST values at different hierarchical scales revealed drift as an important force of population differentiation. Redundancy analyses revealed that genetic structure was strongly affected by both spatial variation and level of urbanization. The results shown here can be used as baseline information for future genetic monitoring programmes and provide additional insights into contemporary house sparrow dynamics along urbanization gradients.

Observation of trapped-electron-mode microturbulence in reversed field pinch plasmas

NASA Astrophysics Data System (ADS)

Duff, J. R.; Williams, Z. R.; Brower, D. L.; Chapman, B. E.; Ding, W. X.; Pueschel, M. J.; Sarff, J. S.; Terry, P. W.

2018-01-01

Density fluctuations in the large-density-gradient region of improved confinement Madison Symmetric Torus reversed field pinch (RFP) plasmas exhibit multiple features that are characteristic of the trapped-electron mode (TEM). Core transport in conventional RFP plasmas is governed by magnetic stochasticity stemming from multiple long-wavelength tearing modes. Using inductive current profile control, these tearing modes are reduced, and global confinement is increased to that expected for comparable tokamak plasmas. Under these conditions, new short-wavelength fluctuations distinct from global tearing modes appear in the spectrum at a frequency of f ˜ 50 kHz, which have normalized perpendicular wavenumbers k⊥ρs≲ 0.2 and propagate in the electron diamagnetic drift direction. They exhibit a critical-gradient threshold, and the fluctuation amplitude increases with the local electron density gradient. These characteristics are consistent with predictions from gyrokinetic analysis using the Gene code, including increased TEM turbulence and transport from the interaction of remnant tearing magnetic fluctuations and zonal flow.

Microwave fields driven domain wall motions in antiferromagnetic nanowires

NASA Astrophysics Data System (ADS)

Chen, Z. Y.; Yan, Z. R.; Zhang, Y. L.; Qin, M. H.; Fan, Z.; Lu, X. B.; Gao, X. S.; Liu, J.-M.

2018-06-01

In this work, we study the microwave field driven domain wall (DW) motion in an antiferromagnetic nanowire, using the numerical calculations based on a classical Heisenberg spin model with the biaxial magnetic anisotropy. We show that a proper combination of a static magnetic field plus an oscillating field perpendicular to the nanowire axis is sufficient to drive the DW propagation along the nanowire. More importantly, the drift velocity at the resonance frequency is comparable to that induced by temperature gradients, suggesting that microwave field can be a very promising tool to control DW motions in antiferromagnetic nanostructures. The dependences of resonance frequency and drift velocity on the static and oscillating fields, the axial anisotropy, and the damping constant are discussed in details. Furthermore, the optimal orientations of the field are also numerically determined and explained. This work provides useful information for the spin dynamics in antiferromagnetic nanostructures for spintronics applications.

New type of drift tubes for gas-discharge detectors operating in vacuum: Production technology and quality control

NASA Astrophysics Data System (ADS)

Azorskii, N. I.; Gusakov, Yu. V.; Elsha, V. V.; Enik, T. L.; Ershov, Yu. V.; Kekelidze, V. D.; Kislov, E. M.; Kolesnikov, A. O.; Madigozhin, D. T.; Movchan, S. A.; Polenkevich, I. A.; Potrebenikov, Yu. K.; Samsonov, V. A.; Shkarovskiy, S. N.; Sotnikov, A. N.; Volkov, A. D.; Zinchenko, A. I.

2017-01-01

A device for fabricating thin-wall (straw) drift tubes using polyethylene terephthalate film 36 μm thick by ultrasonic welding is described together with the technique for controlling their quality. The joint width amounts to 0.4-1.0 mm. The joint breaking strength is 31.9 kg/mm2. The argon leakage from a tube of volume 188.6 cm3 under a pressure gradient of 1.0 atm does not exceed 0.3 × 10-3 cm3/min, which is mainly related to the absence of metallization in the joint vicinity. The high strength, the low tensile creep due to the absence of glued layers, the small value of gas leakage makes the new tubes capable of reliable and long-term operation in vacuum, which is confirmed by the operation of 7168 straw tubes for two years in the NA62 experiment.

Hydrodynamic collective effects of active protein machines in solution and lipid bilayers

PubMed Central

Mikhailov, Alexander S.; Kapral, Raymond

2015-01-01

The cytoplasm and biomembranes in biological cells contain large numbers of proteins that cyclically change their shapes. They are molecular machines that can function as molecular motors or carry out various other tasks in the cell. Many enzymes also undergo conformational changes within their turnover cycles. We analyze the advection effects that nonthermal fluctuating hydrodynamic flows induced by active proteins have on other passive molecules in solution or membranes. We show that the diffusion constants of passive particles are enhanced substantially. Furthermore, when gradients of active proteins are present, a chemotaxis-like drift of passive particles takes place. In lipid bilayers, the effects are strongly nonlocal, so that active inclusions in the entire membrane contribute to local diffusion enhancement and the drift. All active proteins in a biological cell or in a membrane contribute to such effects and all passive particles, and the proteins themselves, will be subject to them. PMID:26124140

Vorticity scaling and intermittency in drift-interchange plasma turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dura, P. D.; Hnat, B.; Robinson, J.

2012-09-15

The effects of spatially varying magnetic field strength on the scaling properties of plasma turbulence, modelled by an extended form of Hasegawa-Wakatani model, are investigated. We study changes in the intermittency of the velocity, density, and vorticity fields, as functions of the magnetic field inhomogeneity C=-{partial_derivative} ln B/{partial_derivative}x. While the velocity fluctuations are always self-similar and their scaling is unaffected by the value of C, the intermittency levels in density and vorticity change with parameter C, reflecting morphological changes in the coherent structures due to the interchange mechanism. Given the centrality of vorticity in conditioning plasma transport, this result ismore » of interest in scaling the results of transport measurements and simulations in tokamak edge plasmas, where drift-interchange turbulence in the presence of a magnetic field gradient is likely to occur.« less

Model of climate evolution based on continental drift and polar wandering

NASA Technical Reports Server (NTRS)

Donn, W. L.; Shaw, D. M.

1977-01-01

The thermodynamic meteorologic model of Adem is used to trace the evolution of climate from Triassic to present time by applying it to changing geography as described by continental drift and polar wandering. Results show that the gross changes of climate in the Northern Hemisphere can be fully explained by the strong cooling in high latitudes as continents moved poleward. High-latitude mean temperatures in the Northern Hemisphere dropped below the freezing point 10 to 15 m.y. ago, thereby accounting for the late Cenozoic glacial age. Computed meridional temperature gradients for the Northern Hemisphere steepened from 20 to 40 C over the 200-m.y. period, an effect caused primarily by the high-latitude temperature decrease. The primary result of the work is that the cooling that has occurred since the warm Mesozoic period and has culminated in glaciation is explainable wholly by terrestrial processes.

A model of impulsive acceleration and transport of energetic particles in Mercury's magnetosphere

NASA Technical Reports Server (NTRS)

Baker, D. N.; Simpson, J. A.; Eraker, J. H.

1986-01-01

A qualitative model of substorm processes in the Mercury magnetosphere is presented based on Mariner 10 observations obtained in 1974-1975. The model is predicated on close analogies observed with the terrestrial case. Particular emphasis is given to energetic particle phenomena as observed by Mariner on March 29, 1974. The suggestion is supported that energetic particles up to about 500 keV are produced by strong induced electric fields at 3 to about 6 Mercury radii in the Hermean tail in association with substorm neutral line formation. The bursts of energetic particles produced are, in this model, subsequently confined on closed field lines near Mercury and drift adiabatically on quasi-trapped orbits for many tens of seconds. Such gradient and curvature drift of the particles can explain prominent periodicities of 5-10 s seen in the Mariner for greater than 170-keV electron flux profiles.

Observations of neutral winds in the auroral E region during the magnetospheric storm of August 3-9, 1972

NASA Technical Reports Server (NTRS)

Brekke, A.; Doupnik, J. R.; Banks, P. M.

1974-01-01

Auroral zone E-region neutral winds have been derived from simultaneous measurements of ion drift velocities in different altitudes by the incoherent radar facility at Chatanika, Alaska, on a quiet day before and during the great magnetospheric storm of Aug. 3-9, 1972. The neutral wind expected for a day-night pressure asymmetry appears to be strongly opposed by ion drag and local pressure gradients in the auroral oval.

Electrostatic drift instability in a magnetotail configuration: The role of bouncing electrons

NASA Astrophysics Data System (ADS)

Fruit, G.; Louarn, P.; Tur, A.

2017-03-01

To understand the possible destabilization of two-dimensional current sheets, a kinetic model is proposed to describe the resonant interaction between electrostatic modes and trapped electrons that bounce within the sheet. This work follows the initial investigation by Tur, Louarn, and Yanovsky [Phys. Plasmas 17, 102905 (2010)] and Fruit, Louarn, and Tur [Phys. Plasmas 20, 022113 (2013)] that is revised and extended. Using a quasi-dipolar equilibrium state, the linearized gyro-kinetic Vlasov equation is solved for electrostatic fluctuations with a period of the order of the electron bounce period. Using an appropriated Fourier expansion of the particle motion along the magnetic field, the complete time integration of the non-local perturbed distribution functions is performed. The dispersion relation for electrostatic modes is then obtained through the quasineutrality condition. It is found that for a mildly stretched configuration ( L ˜8 ), strongly unstable electrostatic modes may develop in the current sheet with the growth rate of the order of a few seconds provided that the background density gradient responsible for the diamagnetic drift effects is sharp enough: typical length scale over one Earth radius or less. However, when this condition in the density gradient is not met, these electrostatic modes grow too slowly to be accountable for a rapid destabilization of the magnetic structure. This strong but finely tuned instability may offer opportunities to explain features in magnetospheric substorms.

BOUT++ simulations of edge turbulence in Alcator C-Mod's EDA H-mode

NASA Astrophysics Data System (ADS)

Davis, E. M.; Porkolab, M.; Hughes, J. W.; Labombard, B.; Snyder, P. B.; Xu, X. Q.; MIT PSFC Team; Atomics Team, General; LLNL Team

2013-10-01

Energy confinement in tokamaks is believed to be strongly controlled by plasma transport in the pedestal. The pedestal of Alcator C-Mod's Enhanced Dα (EDA) H-mode (ν* > 1) is regulated by a quasi-coherent mode (QCM), an edge fluctuation believed to reduce particle confinement and allow steady-state H-mode operation. ELITE calculations indicate that EDA H-modes sit well below the ideal peeling-ballooning instability threshold, in contrast with ELMy H-modes. Here, we use a 3-field reduced MHD model in BOUT++ to study the effects of nonideal and nonlinear physics on EDA H-modes. In particular, incorporation of realistic pedestal resistivity is found to drive resistive ballooning modes (RBMs) and increase linear growth rates above the corresponding ideal rates. These RBMs may ultimately be responsible for constraining the EDA pedestal gradient. However, recent high-fidelity mirror Langmuir probe measurements indicate that the QCM is an electron drift-Alfvén wave - not a RBM. Inclusion of the parallel pressure gradient term in the 3-field reduced MHD Ohm's law and various higher field fluid models are implemented in an effort to capture this drift wave-like response. This work was performed under the auspices of the USDoE under awards DE-FG02-94-ER54235, DE-AC52-07NA27344, DE-AC52-07NA27344, and NNSA SSGF.

BOUT++ Simulations of Edge Turbulence in Alcator C-Mod's EDA H-Mode

NASA Astrophysics Data System (ADS)

Davis, E. M.; Porkolab, M.; Hughes, J. W.; Labombard, B.; Snyder, P. B.; Xu, X. Q.

2013-10-01

Energy confinement in tokamaks is believed to be strongly controlled by plasma transport in the pedestal. The pedestal of Alcator C-Mod's Enhanced Dα (EDA) H-mode (ν* > 1) is regulated by a quasi-coherent mode (QCM), an edge fluctuation believed to reduce particle confinement and allow steady-state H-mode operation. ELITE calculations indicate that EDA H-modes sit well below the ideal peeling-ballooning instability threshold, in contrast with ELMy H-modes. Here, we use a 3-field reduced MHD model in BOUT++ to study the effects of nonideal and nonlinear physics on EDA H-modes. In particular, incorporation of realistic pedestal resistivity is found to drive resistive ballooning modes (RBMs) and increase linear growth rates above the corresponding ideal rates. These RBMs may ultimately be responsible for constraining the EDA pedestal gradient. However, recent high-fidelity mirror Langmuir probe measurements indicate that the QCM is an electron drift-Alfvén wave - not a RBM. Inclusion of the parallel pressure gradient term in the 3-field reduced MHD Ohm's law and various higher field fluid models are implemented in an effort to capture this drift wave-like response. This work was performed under the auspices of the USDoE under awards DE-FG02-94-ER54235, DE-AC52-07NA27344, DE-AC52-07NA27344, and NNSA SSGF.

Local gyrokinetic study of electrostatic microinstabilities in dipole plasmas

NASA Astrophysics Data System (ADS)

Xie, Hua-sheng; Zhang, Yi; Huang, Zi-cong; Ou, Wei-ke; Li, Bo

2017-12-01

A linear gyrokinetic particle-in-cell scheme, which is valid for an arbitrary perpendicular wavelength k⊥ρi and includes the parallel dynamic along the field line, is developed to study the local electrostatic drift modes in point and ring dipole plasmas. We find that the most unstable mode in this system can be either the electron mode or the ion mode. The properties and relations of these modes are studied in detail as a function of k⊥ρi , the density gradient κn, the temperature gradient κT, electron to ion temperature ratio τ=Te/Ti , and mass ratio mi/me . For conventional weak gradient parameters, the mode is on the ground state (with eigenstate number l = 0) and especially k∥˜0 for small k⊥ρi . Thus, the bounce averaged dispersion relation is also derived for comparison. For strong gradient and large k⊥ρi , most interestingly, higher order eigenstate modes with even (e.g., l = 2, 4) or odd (e.g., l = 1) parity can be most unstable, which is not expected in the previous studies. High order eigenstate can also easily be most unstable at weak gradient when τ>10 . This work can be particularly important to understand the turbulent transport in laboratory and space magnetosphere.

Understanding and predicting profile structure and parametric scaling of intrinsic rotation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, W. X.; Grierson, B. A.; Ethier, S.

2017-08-10

This study reports on a recent advance in developing physical understanding and a first-principles-based model for predicting intrinsic rotation profiles in magnetic fusion experiments. It is shown for the first time that turbulent fluctuation-driven residual stress (a non-diffusive component of momentum flux) along with diffusive momentum flux can account for both the shape and magnitude of the observed intrinsic toroidal rotation profile. Both the turbulence intensity gradient and zonal flow E×B shear are identified as major contributors to the generation of the k ∥-asymmetry needed for the residual stress generation. The model predictions of core rotation based on global gyrokineticmore » simulations agree well with the experimental measurements of main ion toroidal rotation for a set of DIII-D ECH discharges. The validated model is further used to investigate the characteristic dependence of residual stress and intrinsic rotation profile structure on the multi-dimensional parametric space covering the turbulence type, q-profile structure, and up-down asymmetry in magnetic geometry with the goal of developing the physics understanding needed for rotation profile control and optimization. It is shown that in the flat-q profile regime, intrinsic rotations driven by ITG and TEM turbulence are in the opposite direction (i.e., intrinsic rotation reverses). The predictive model also produces reversed intrinsic rotation for plasmas with weak and normal shear q-profiles.« less

A Study of Electron Modes in Off-axis Heated Alcator C-Mod Plasmas

NASA Astrophysics Data System (ADS)

Fiore, C. L.; Ernst, D. R.; Mikkelsen, D.; Ennever, P. C.; Howard, N. T.; Gao, C.; Reinke, M. L.; Rice, J. E.; Hughes, J. W.; Walk, J. R.

2013-10-01

Understanding the underlying physics and stability of the peaked density internal transport barriers (ITB) that have been observed during off-axis ICRF heating of Alcator C-Mod plasmas is the goal of recent gyro-kinetic simulations. Two scenarios are examined: an ITB plasma formed with maximal (4.5 MW) off-axis heating power; also the use of off-axis heating in an I-mode plasma as a target in the hopes of establishing an ITB. In the former, it is expected that evidence of trapped electron mode instabilities could be found if a sufficiently high electron temperature is achieved in the core. Linear simulations show unstable modes are present across the plasma core from r/a = 0.2 and greater. In the latter case, despite establishing similar conditions to those in which ITBS were formed, none developed in the I-mode plasmas. Linear gyrokinetic analyses show no unstable ion modes at r/a < 0.55 in these I-mode plasmas, with both ITG and ETG modes present beyond r/a = 0.65. The details of the experimental results will be presented. Linear and non-linear simulations of both of these cases will attempt to explore the underlying role of electron and ion gradient driven instabilities to explain the observations. This work was supported by US-DoE DE-FC02-99ER54512 and DE-AC02-09CH11466.

Erratum: Evidence That a Deep Meridional Flow Sets the Sunspot Cycle Period

NASA Technical Reports Server (NTRS)

Hathaway, David H.; Nandy, Dibyendu; Wilson, Robert M.; Reichmann, Edwin J.

2004-01-01

An error was made in entering the data. This changes the results concerning the length of the time lag between the variations in the meridional flow speed and those in the cycle amplitude. The final paragraph on page 667 should read: Finally, we study the relationship between the drift velocities and the amplitudes of the hemisphere/cycles. We compare the drift velocity at the maximum of the cycle to the amplitude of that cycle for that hemisphere. There is a positive (0.5) and significant (95%) correlation between the two. However, an even stronger relationship is found between the drift velocity and the amplitude of the N + 2 cycle. The correlation is stronger (0.7) and more significant (99%), as shown. This relationship is suggestive of a "memory" in the solar cycle, again a property of dynamo models that use meridional circulation. Indeed, the two-cycle lag is precisely the relationship found by Charbonneau & Dikpati. This behavior is, however, more difficult to interpret, and we elaborate on this in the next section. In either case, these correlations only explain part of the variance in cycle amplitude (25% for the current cycle and 50% for the N + 2 cycle). Obviously, other mechanisms, such as variations in the gradient in the rotation rate, also contribute to the cycle amplitude variations. Our investigation of possible connections between drift rates and the amplitudes of the N + 1 and N + 3 cycles gives no significant correlations at these alternative time lags.

Benchmark studies of the gyro-Landau-fluid code and gyro-kinetic codes on kinetic ballooning modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang, T. F.; Lawrence Livermore National Laboratory, Livermore, California 94550; Xu, X. Q.

2016-03-15

A Gyro-Landau-Fluid (GLF) 3 + 1 model has been recently implemented in BOUT++ framework, which contains full Finite-Larmor-Radius effects, Landau damping, and toroidal resonance [Ma et al., Phys. Plasmas 22, 055903 (2015)]. A linear global beta scan has been conducted using the JET-like circular equilibria (cbm18 series), showing that the unstable modes are kinetic ballooning modes (KBMs). In this work, we use the GYRO code, which is a gyrokinetic continuum code widely used for simulation of the plasma microturbulence, to benchmark with GLF 3 + 1 code on KBMs. To verify our code on the KBM case, we first perform the beta scan basedmore » on “Cyclone base case parameter set.” We find that the growth rate is almost the same for two codes, and the KBM mode is further destabilized as beta increases. For JET-like global circular equilibria, as the modes localize in peak pressure gradient region, a linear local beta scan using the same set of equilibria has been performed at this position for comparison. With the drift kinetic electron module in the GYRO code by including small electron-electron collision to damp electron modes, GYRO generated mode structures and parity suggest that they are kinetic ballooning modes, and the growth rate is comparable to the GLF results. However, a radial scan of the pedestal for a particular set of cbm18 equilibria, using GYRO code, shows different trends for the low-n and high-n modes. The low-n modes show that the linear growth rate peaks at peak pressure gradient position as GLF results. However, for high-n modes, the growth rate of the most unstable mode shifts outward to the bottom of pedestal and the real frequency of what was originally the KBMs in ion diamagnetic drift direction steadily approaches and crosses over to the electron diamagnetic drift direction.« less

A new method of derived equatorial plasma bubbles motion by tracing OI 630 nm emission all-sky images

NASA Astrophysics Data System (ADS)

Li, M.; Yu, T.; Chunliang, X.; Zuo, X.; Liu, Z.

2017-12-01

A new method for estimating the equatorial plasma bubbles (EPBs) motions from airglow emission all-sky images is presented in this paper. This method, which is called 'cloud-derived wind technology' and widely used in satellite observation of wind, could reasonable derive zonal and meridional velocity vectors of EPBs drifts by tracking a series of successive airglow 630.0 nm emission images. Airglow emission images data are available from an all sky airglow camera in Hainan Fuke (19.5°N, 109.2°E) supported by China Meridional Project, which can receive the 630.0nm emission from the ionosphere F region at low-latitudes to observe plasma bubbles. A series of pretreatment technology, e.g. image enhancement, orientation correction, image projection are utilized to preprocess the raw observation. Then the regions of plasma bubble extracted from the images are divided into several small tracing windows and each tracing window can find a target window in the searching area in following image, which is considered as the position tracing window moved to. According to this, velocities in each window are calculated by using the technology of cloud-derived wind. When applying the cloud-derived wind technology, the maximum correlation coefficient (MCC) and the histogram of gradient (HOG) methods to find the target window, which mean to find the maximum correlation and the minimum euclidean distance between two gradient histograms in respectively, are investigated and compared in detail. The maximum correlation method is fianlly adopted in this study to analyze the velocity of plasma bubbles because of its better performance than HOG. All-sky images from Hainan Fuke, between August 2014 and October 2014, are analyzed to investigate the plasma bubble drift velocities using MCC method. The data at different local time at 9 nights are studied and find that zonal drift velocity in different latitude at different local time ranges from 50 m/s to 180 m/s and there is a peak value at about 20°N. For comparison and validation, EPBs motions obtained from three traditional methods are also investigated and compared with MC method. The advantages and disadvantages of using cloud-derived wind technology to calculate EPB drift velocity are discussed.

Biodegradable Vaccine Microcapsules for Systemic and Mucosal Immunization against RVF and VEE Viruses

DTIC Science & Technology

1992-03-31

C-0113 TITLE: BIODEGRADABLE VACCINE MICROCAPSULES FOR SYSTEMIC AND MUCOSAL IMMUNIZATION AGAINST RVF and VEE Viruses PRINCIPAL INVESTIGATOR: John H...approximately 0.8% by weight VEE vaccine. As measured by ELISA, immunization of mice with from 3 to 100 I.tg of microencapsulated vaccine potentiated the plasma...PAGESuzodegradable microspheres, VEE vaccine, RVF vaccine, vaccines RA I, BD, Lab Animals, Mice, Microencapsulation 16. PRICE COOJE 17, SECURITY

Principles of Adaptive Array Processing

DTIC Science & Technology

2006-09-01

ACE with and without tapering (homogeneous case). These analytical results are less suited to predict the detection performance of a real system ...Nickel: Adaptive Beamforming for Phased Array Radars. Proc. Int. Radar Symposium IRS’98 (Munich, Sept. 1998), DGON and VDE /ITG, pp. 897-906.(Reprint also...strategies for airborne radar. Asilomar Conf. on Signals, Systems and Computers, Pacific Grove, CA, 1998, IEEE Cat.Nr. 0-7803-5148-7/98, pp. 1327-1331. [17

The Extraction of 3D Shape from Texture and Shading in the Human Brain

PubMed Central

Georgieva, Svetlana S.; Todd, James T.; Peeters, Ronald

2008-01-01

We used functional magnetic resonance imaging to investigate the human cortical areas involved in processing 3-dimensional (3D) shape from texture (SfT) and shading. The stimuli included monocular images of randomly shaped 3D surfaces and a wide variety of 2-dimensional (2D) controls. The results of both passive and active experiments reveal that the extraction of 3D SfT involves the bilateral caudal inferior temporal gyrus (caudal ITG), lateral occipital sulcus (LOS) and several bilateral sites along the intraparietal sulcus. These areas are largely consistent with those involved in the processing of 3D shape from motion and stereo. The experiments also demonstrate, however, that the analysis of 3D shape from shading is primarily restricted to the caudal ITG areas. Additional results from psychophysical experiments reveal that this difference in neuronal substrate cannot be explained by a difference in strength between the 2 cues. These results underscore the importance of the posterior part of the lateral occipital complex for the extraction of visual 3D shape information from all depth cues, and they suggest strongly that the importance of shading is diminished relative to other cues for the analysis of 3D shape in parietal regions. PMID:18281304

Dissipative ion-cyclotron oscillitons in a form of solitons with chirp in Earth's low-altitude ionosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kovaleva, I. Kh.

2012-10-15

In this paper, we consider theoretically nonlinear ion-cyclotron gradient-drift dissipative structures (oscillitons) in low ionospheric plasmas. Similar to Nonlinear Optics and Condensed Matter Physics, the Ginzburg-Landau equation for the envelope of electric wave fields is derived, and solutions for oscillitons in the form of solitons with chirp are examined. The whole dissipative structure constitutes a soliton with a moving charge-neutral density hump. Conditions for excitation and properties of the structures are considered.

Transverse ac-driven and geometric ratchet effects for vortices in conformal crystal pinning arrays

DOE PAGES

Reichhardt, Charles; Reichhardt, Cynthia Jane Olsen

2016-02-11

A conformal pinning array is created by taking a conformal transformation of a uniform hexagonal lattice to create a structure in which the sixfold ordering of the original lattice is preserved but which has a spatial gradient in the pinning site density. With a series of conformal arrays it is possible to create asymmetric substrates, and it was previously shown that when an ac drive is applied parallel to the asymmetry direction, a pronounced ratchet effect occurs with a net dc flow of vortices in the same direction as the ac drive. Here, in this article, we show that whenmore » the ac drive is applied perpendicular to the substrate asymmetry direction, it is possible to realize a transverse ratchet effect where a net dc flow of vortices is generated perpendicular to the ac drive. The conformal transverse ratchet effect is distinct from previous versions of transverse ratchets in that it occurs due to the generation of non-Gaussian transverse vortex velocity fluctuations by the plastic motion of vortices, so that the system behaves as a noise correlation ratchet. The transverse ratchet effect is much more pronounced in the conformal arrays than in random gradient arrays and is absent in square gradient arrays due the different nature of the vortex flow in each geometry. We show that a series of reversals can occur in the transverse ratchet effect due to changes in the vortex flow across the pinning gradient as a function of vortex filling, pinning strength, and ac amplitude. We also consider the case where a dc drive applied perpendicular to the substrate asymmetry direction generates a net flow of vortices perpendicular to the dc drive, producing what is known as a geometric or drift ratchet that again arises due to non-Gaussian dynamically generated fluctuations. The drift ratchet is more efficient than the ac driven ratchet and also exhibits a series of reversals for varied parameters. Lastly, our results should be general to a wide class of systems undergoing nonequilibrium dynamics on conformal substrates, such as colloidal particles on optical traps.« less

Investigation of the n  =  1 resistive wall modes in the ITER high-mode confinement

NASA Astrophysics Data System (ADS)

Zheng, L. J.; Kotschenreuther, M. T.; Valanju, P.

2017-06-01

The n  =  1 resistive wall mode (RWM) stability of ITER high-mode confinement is investigated with bootstrap current included for equilibrium, together with the rotation and diamagnetic drift effects for stability. Here, n is the toroidal mode number. We use the CORSICA code for computing the free boundary equilibrium and AEGIS code for stability. We find that the inclusion of bootstrap current for equilibrium is critical. It can reduce the local magnetic shear in the pedestal, so that the infernal mode branches can develop. Consequently, the n  =  1 modes become unstable without a stabilizing wall at a considerably lower beta limit, driven by the steep pressure gradient in the pedestal. Typical values of the wall position stabilize the ideal mode, but give rise to the ‘pedestal’ resistive wall modes. We find that the rotation can contribute a stabilizing effect on RWMs and the diamagnetic drift effects can further improve the stability in the co-current rotation case. But, generally speaking, the rotation stabilization effects are not as effective as the case without including the bootstrap current effects on equilibrium. We also find that the diamagnetic drift effects are actually destabilizing when there is a counter-current rotation.

Measurements of Doppler-ion temperature and flow in the multi-pulsing CHI experiment on HIST

NASA Astrophysics Data System (ADS)

Hanao, T.; Ishihara, M.; Hirono, H.; Hyobu, T.; Ito, K.; Matsumoto, K.; Nakayama, T.; Kikuchi, Y.; Fukumoto, N.; Nagata, M.

2012-10-01

The steady-state current sustainment of spherical torus (ST) configurations is expected to be achieved by Multi-pulsing Coaxial Helicity Injection (M-CHI) method. In the double-pulsing discharges, the plasma current can be sustained much longer against the resistive decay compared to the single CHI. The M-CHI has capabilities as a static ion heating method. Ion Doppler Spectrometer (IDS) measurements confirmed a significant increase in the ion temperature after the second CHI pulse. The ion heating mechanism is an important issue to be explored in the M-CHI experiments. It is considered due to the magnetic reconnection process of plasmoids and/or the damping of the Alfven wave. The ion heating becomes suppressed around the separatrix layer in the high field side where the amplitude of the magnetic fluctuations is minimized due to the poloidal flow shear. The shear flow generation is caused by ExB drift and ion diamagnetic drift. The contribution from the diamagnetic drift on the shear flow can be evaluated by measuring the flow velocity of hydrogen and impurity ions by using Mach probe and IDS. We will discuss the dependence of the ion heating characteristics on the variation of the density gradient by varying TF coil current.

At limits of life: multidisciplinary insights reveal environmental constraints on biotic diversity in continental Antarctica.

PubMed

Magalhães, Catarina; Stevens, Mark I; Cary, S Craig; Ball, Becky A; Storey, Bryan C; Wall, Diana H; Türk, Roman; Ruprecht, Ulrike

2012-01-01

Multitrophic communities that maintain the functionality of the extreme Antarctic terrestrial ecosystems, while the simplest of any natural community, are still challenging our knowledge about the limits to life on earth. In this study, we describe and interpret the linkage between the diversity of different trophic level communities to the geological morphology and soil geochemistry in the remote Transantarctic Mountains (Darwin Mountains, 80°S). We examined the distribution and diversity of biota (bacteria, cyanobacteria, lichens, algae, invertebrates) with respect to elevation, age of glacial drift sheets, and soil physicochemistry. Results showed an abiotic spatial gradient with respect to the diversity of the organisms across different trophic levels. More complex communities, in terms of trophic level diversity, were related to the weakly developed younger drifts (Hatherton and Britannia) with higher soil C/N ratio and lower total soluble salts content (thus lower conductivity). Our results indicate that an increase of ion concentration from younger to older drift regions drives a succession of complex to more simple communities, in terms of number of trophic levels and diversity within each group of organisms analysed. This study revealed that integrating diversity across multi-trophic levels of biotic communities with abiotic spatial heterogeneity and geological history is fundamental to understand environmental constraints influencing biological distribution in Antarctic soil ecosystems.

Compressive and rarefactive double layers in non-uniform plasma with q-nonextensive distributed electrons

NASA Astrophysics Data System (ADS)

Shan, S. Ali; Saleem, H.

2018-05-01

Electrostatic solitary waves and double layers (DLs) formed by the coupled ion acoustic (IA) and drift waves have been investigated in non-uniform plasma using q-nonextensive distribution function for the electrons and assuming ions to be cold Ti< Te. It is found that both compressive and rarefactive nonlinear structures (solitary waves and DLs) are possible in such a system. The steeper gradients are supportive for compressive solitary (and double layers) and destructive for rarefactive ones. The q-nonextensivity parameter q and the magnitudes of gradient scale lengths of density and temperature have significant effects on the amplitude of the double layers (and double layers) as well as on the speed of these structures. This theoretical model is general which has been applied here to the F-region ionosphere for illustration.

Controlling chimeras

NASA Astrophysics Data System (ADS)

Bick, Christian; Martens, Erik A.

2015-03-01

Coupled phase oscillators model a variety of dynamical phenomena in nature and technological applications. Non-local coupling gives rise to chimera states which are characterized by a distinct part of phase-synchronized oscillators while the remaining ones move incoherently. Here, we apply the idea of control to chimera states: using gradient dynamics to exploit drift of a chimera, it will attain any desired target position. Through control, chimera states become functionally relevant; for example, the controlled position of localized synchrony may encode information and perform computations. Since functional aspects are crucial in (neuro-)biology and technology, the localized synchronization of a chimera state becomes accessible to develop novel applications. Based on gradient dynamics, our control strategy applies to any suitable observable and can be generalized to arbitrary dimensions. Thus, the applicability of chimera control goes beyond chimera states in non-locally coupled systems.

Pseudochemotaxis in inhomogeneous active Brownian systems

NASA Astrophysics Data System (ADS)

Vuijk, Hidde D.; Sharma, Abhinav; Mondal, Debasish; Sommer, Jens-Uwe; Merlitz, Holger

2018-04-01

We study dynamical properties of confined, self-propelled Brownian particles in an inhomogeneous activity profile. Using Brownian dynamics simulations, we calculate the probability to reach a fixed target and the mean first passage time to the target of an active particle. We show that both these quantities are strongly influenced by the inhomogeneous activity. When the activity is distributed such that high-activity zone is located between the target and the starting location, the target finding probability is increased and the passage time is decreased in comparison to a uniformly active system. Moreover, for a continuously distributed profile, the activity gradient results in a drift of active particle up the gradient bearing resemblance to chemotaxis. Integrating out the orientational degrees of freedom, we derive an approximate Fokker-Planck equation and show that the theoretical predictions are in very good agreement with the Brownian dynamics simulations.

Using geometric morphometric visualizations of directional selection gradients to investigate morphological differentiation.

PubMed

Weaver, Timothy D; Gunz, Philipp

2018-04-01

Researchers studying extant and extinct taxa are often interested in identifying the evolutionary processes that have lead to the morphological differences among the taxa. Ideally, one could distinguish the influences of neutral evolutionary processes (genetic drift, mutation) from natural selection, and in situations for which selection is implicated, identify the targets of selection. The directional selection gradient is an effective tool for investigating evolutionary process, because it can relate form (size and shape) differences between taxa to the variation and covariation found within taxa. However, although most modern morphometric analyses use the tools of geometric morphometrics (GM) to analyze landmark data, to date, selection gradients have mainly been calculated from linear measurements. To address this methodological gap, here we present a GM approach for visualizing and comparing between-taxon selection gradients with each other, associated difference vectors, and "selection" gradients from neutral simulations. To exemplify our approach, we use a dataset of 347 three-dimensional landmarks and semilandmarks recorded on the crania of 260 primate specimens (112 humans, 67 common chimpanzees, 36 bonobos, 45 gorillas). Results on this example dataset show how incorporating geometric information can provide important insights into the evolution of the human braincase, and serve to demonstrate the utility of our approach for understanding morphological evolution. © 2018 The Author(s). Evolution © 2018 The Society for the Study of Evolution.

Effects of Alfvénic Drift on Diffusive Shock Acceleration at Weak Cluster Shocks

NASA Astrophysics Data System (ADS)

Kang, Hyesung; Ryu, Dongsu

2018-03-01

Non-detection of γ-ray emission from galaxy clusters has challenged diffusive shock acceleration (DSA) of cosmic-ray (CR) protons at weak collisionless shocks that are expected to form in the intracluster medium. As an effort to address this problem, we here explore possible roles of Alfvén waves self-excited via resonant streaming instability during the CR acceleration at parallel shocks. The mean drift of Alfvén waves may either increase or decrease the scattering center compression ratio, depending on the postshock cross-helicity, leading to either flatter or steeper CR spectra. We first examine such effects at planar shocks, based on the transport of Alfvén waves in the small amplitude limit. For the shock parameters relevant to cluster shocks, Alfvénic drift flattens the CR spectrum slightly, resulting in a small increase of the CR acceleration efficiency, η. We then consider two additional, physically motivated cases: (1) postshock waves are isotropized via MHD and plasma processes across the shock transition, and (2) postshock waves contain only forward waves propagating along with the flow due to a possible gradient of CR pressure behind the shock. In these cases, Alfvénic drift could reduce η by as much as a factor of five for weak cluster shocks. For the canonical parameters adopted here, we suggest η ∼ 10‑4–10‑2 for shocks with sonic Mach number M s ≈ 2–3. The possible reduction of η may help ease the tension between non-detection of γ-rays from galaxy clusters and DSA predictions.

Relationships of models of the inner magnetosphere to the Rice Convection Model

NASA Astrophysics Data System (ADS)

Heinemann, M.; Wolf, R. A.

2001-08-01

Ideal magnetohydrodynamics is known to be inaccurate for the Earth's inner magnetosphere, where transport by gradient-curvature drift is nonnegligible compared to E×B drift. Most theoretical treatments of the inner plasma sheet and ring current, including the Rice Convection Model (RCM), treat the inner magnetospheric plasma in terms of guiding center drifts. The RCM assumes that the distribution function is isotropic, but particles with different energy invariants are treated as separate guiding center fluids. However, Peymirat and Fontaine [1994] developed a two-fluid picture of the inner magnetosphere, which utilizes modified forms of the conventional fluid equations, not guiding center drift equations. Heinemann [1999] argued theoretically that for inner magnetospheric conditions the fluid energy equation should include a heat flux term, which, in the case of Maxwellian plasma, was derived by Braginskii [1965]. We have now reconciled the Heinemann [1999] fluid approach with the RCM. The fluid equations, including the Braginskii heat flux, can be derived by taking appropriate moments of the RCM equations for the case of the Maxwellian distribution. The physical difference between the RCM formalism and the Heinemann [1999] fluid approach is that the RCM pretends that particles suffer elastic collisions that maintain the isotropy of the distribution function but do not change particle energies. The Heinemann [1999] fluid treatment makes a different physical approximation, namely that the collisions maintain local thermal equilibrium among the ions and separately among the electrons. For some simple cases, numerical results are presented that illustrate the differences in the predictions of the two formalisms, along with those of MHD, guiding center theory, and Peymirat and Fontaine [1994].

Establishing a Rational New Zealand/United States Defense Relationship

DTIC Science & Technology

1994-01-01

5500 Standard Form 298 (Rev. 2-89) Prescribed by ANSI Std. Z39-16 298-102 1~4CJC SRATGYESSAY WRCITING COMIPETITION ENTRY ESTABLISHING A RATIONAL NEW...AJBAvailability Codjes ALABAMA ABSTRACT TITLE: E lishng a Rational New Zealand/United States Defense Relationship AUTHOR.- Richard J. Newlands, Wing...Current Stetu of the New Zealand/United States Relationship 12 OutstandItg Issues .1 Toward a Rational New Zealan/Unted States Defense Relationship .16

ENERGETIC PARTICLE ANISOTROPIES AT THE HELIOSPHERIC BOUNDARY. II. TRANSIENT FEATURES AND RIGIDITY DEPENDENCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Florinski, V.; Roux, J. A. le; Stone, E. C.

In the preceding paper, we showed that large second-order anisotropies of heliospheric ions measured by the Voyager 1 space probe during the August 2012 boundary crossing event could be explained by a magnetic shear across the heliopause preventing particles streaming along the magnetic field from escaping the inner heliosheath. According to Stone et al., the penetration distance of heliospheric ions into the outer heliosheath had a strong dependence on the particle’s Larmor radius. By comparing hydrogen, helium, and oxygen ions with the same energy per nucleon, these authors argued that this effect must be attributed to larger cyclotron radii ofmore » heavier species rather than differences in velocity. We propose that gradient drift in a nonuniform magnetic field was the cause of both the large second-order anisotropies and the spatial differentiation based on the ion’s rigidity. A latitudinal gradient of magnetic field strength of about 10% per AU between 2012.7 and 2012.9 could have provided drift motion sufficient to match both LECP and CRS Voyager 1 observations. We explain the transient intensity dropout observed prior to the heliocliff using flux tube structures embedded in the heliosheath and magnetically connected to interstellar space. Finally, this paper reports a new indirect measurement of the plasma radial velocity at the heliopause on the basis of the time difference between two cosmic-ray telescopes measuring the same intensity dropout.« less

Design principles for high efficiency small-grain polysilicon solar cells, with supporting experimental studies

NASA Technical Reports Server (NTRS)

Lindholm, F. A.; Neugroschel, A.; Sah, C. T.

1982-01-01

Design principles suggested here aim toward high conversion efficiency (greater than 15 percent) in polysilicon cells. The principles seek to decrease the liabilities of both intragranular and grain-boundary-surface defects. The advantages of a phosphorus atom concentration gradient in a thin (less than 50 microns) base of a p(+)/n(x)/n(+) drift-field solar cell, which produces favorable gradients in chemical potential, minority-carrier mobility and diffusivity, and recombination lifetime (via phosphorus gettering) are suggested. The degrading effects of grain boundaries are reduced by these three gradients and by substituting atoms (P, H, F or Li) for vacancies on the grain-boundary surface. From recent experiments comes support for the benefits of P diffusion down grain boundaries and, for quasi-grain-boundary-free and related structures. New analytic solutions for the n(x)-base include the effect of a power-law dependence between P concentration and lifetime. These provide an upper-bound estimate on the open circuit voltage. Finite-difference numerical solutions of the six Shockley equations furnish complete information about all solar-cell parameters and add insight concerning design.

Feedback control of plasma instabilities with charged particle beams and study of plasma turbulence

NASA Technical Reports Server (NTRS)

Tham, Philip Kin-Wah

1994-01-01

A new non-perturbing technique for feedback control of plasma instabilities has been developed in the Columbia Linear Machine (CLM). The feedback control scheme involves the injection of a feedback modulated ion beam as a remote suppressor. The ion beam was obtained from a compact ion beam source which was developed for this purpose. A Langmuir probe was used as the feedback sensor. The feedback controller consisted of a phase-shifter and amplifiers. This technique was demonstrated by stabilizing various plasma instabilities to the background noise level, like the trapped particle instability, the ExB instability and the ion-temperature-gradient (ITG) driven instability. An important feature of this scheme is that the injected ion beam is non-perturbing to the plasma equilibrium parameters. The robustness of this feedback stabilization scheme was also investigated. The principal result is that the scheme is fairly robust, tolerating about 100% variation about the nominal parameter values. Next, this scheme is extended to the unsolved general problem of controlling multimode plasma instabilities simultaneously with a single sensor-suppressor pair. A single sensor-suppressor pair of feedback probes is desirable to reduce the perturbation caused by the probes. Two plasma instabilities the ExB and the ITG modes, were simultaneously stabilized. A simple 'state' feedback type method was used where more state information was generated from the single sensor Langmuir probe by appropriate signal processing, in this case, by differentiation. This proof-of-principle experiment demonstrated for the first time that by designing a more sophisticated electronic feedback controller, many plasma instabilities may be simultaneously controlled. Simple theoretical models showed generally good agreement with the feedback experimental results. On a parallel research front, a better understanding of the saturated state of a plasma instability was sought partly with the help of feedback. A plasma instability is usually observed in its saturated state and appears as a single feature in the frequency spectrum with a single azimuthal and parallel wavenumbers. The physics of the non-zero spectral width was investigated in detail because the finite spectral width can cause "turbulent" transport. One aspect of the "turbulence" was investigated by obtaining the scaling of the linear growth rate of the instabilities with the fluctuation levels. The linear growth rates were measured with the established gated feedback technique. The research showed that the ExB instability evolves into a quasi-coherent state when the fluctuation level is high. The coherent aspects were studied with a bispectral analysis. Moreover, the single spectral feature was discovered to be actually composed of a few radial harmonics. The radial harmonics play a role in the nonlinear saturation of the instability via three-wave coupling.

Instrumental head impulse test changes after intratympanic gentamicin for unilateral definite Ménière's disease: A systematic review and meta-analysis.

PubMed

Marques, Pedro Santos; Dias, Claudia Camila; Perez-Fernandez, Nicolas; Spratley, Jorge

2018-02-02

To estimate how much could intratympanic gentamicin (ITG) interfere with the vestibular-ocular reflex (VOR) parameters on instrumental head impulse test (HIT), either with scleral search coil or video head impulse test and, eventually, foresee the control of vertigo crisis in unilateral intractable Ménière's disease (MD). A literature search was conducted in PubMed, Scopus, Web of Science and Cochrane search engines. The search terms used were "vestibular ocular reflex", "head impulse test", "gentamicin," and "Meniere's disease". Limitations included text availability to be full text, species to be humans and language to be English. All study types were included. 89 articles were screened identifying four eligible studies were identified. Studies were included after consensus of the authors. Meta-analysis was conducted using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Data was analysed using Review Manager software. Instrumental HIT, after ITG for MD, demonstrated, in the treated ear, a decreased gain in the horizontal, posterior and superior semicircular canals (SCC), of 0.36 (0.26; 0.47; 95% CI), 0.35 (0.22; 0.48; 95% CI) and 0.28 (0.21; 0.35; 95% CI), respectively. Gain asymmetry increases between the treated and non-treated ear of 23.78 (7.22; 40.35; 95% CI), 32.01 (12.27; 51.76; 95% CI) and 17.49 (9.99; 24.99; 95% CI), were similarly detected in the horizontal, posterior and superior SCC, respectively. Significantly smaller gain values after the first treatment were observed for a single injection group versus multiple injection group in the horizontal (p=0.002) and superior SCCs (p=0.016). Instrumental HIT is effective in evaluating the SCC function after ITG for intractable unilateral MD. VOR gain changes in the direction of the treated ear in the three SCC have been clearly registered. An increased reduction of the VOR gain in the horizontal and anterior SCC also seemed to foresee the control of vertigo crisis. Still, after meta-analysis, the small number of patients' data available did not allow to define a treatment end-point value. This review also indicated that further and better-designed studies are warranted. Copyright © 2018 Elsevier B.V. All rights reserved.

The dependence of solar modulation on the sign of the cosmic ray particle charge

NASA Technical Reports Server (NTRS)

Garcia-Munoz, M.; Meyer, P.; Pyle, K. R.; Simpson, J. A.; Evenson, P. A.

1985-01-01

The solar modulation of galactic cosmic ray helium and electrons at 1 AU, within the 600-1000 MV magnetic rigidity interval, are compared for the period from 1965 through 1984. The time-intensity variations during the two solar maxima around 1970 and 1981 show that after 1970 the helium intensity recovers earlier than that of the electrons, whereas after 1981 the electron intensity recovers earlier than that of helium. The flux ratio of helium to electrons (He/e) undergoes a major increases during the 1969-1971 period and a major decrease during 1979-83. These experimental results can be interpreted as due to a dependence of the solar modulation of galactic cosmic rays on the sign of the particle charge, possibly as a consequence of drifts due to gradients and curvatures in the interplanetary magnetic field. However, the comparison of the shapes of the intensity-time curves of helium and electrons in the period 1970-1981 does not support a major specific prediction of the drift model.

Linear instability regimes in L-mode edges using reduced MHD models in BOUT + +

NASA Astrophysics Data System (ADS)

Bass, Eric; Holland, Chris; Cohen, Bruce; Umansky, Maxim

2016-10-01

We compare linear instabilities in the edge of two DIII-D L-mode discharges using reduced two-fluid MHD models implemented in BOUT + +. Discharge 119919, a case used in a previous BOUT + + validation study, has a cold edge and is dominated by resistive ballooning modes (RBMs). Hotter discharge 128913, an L-mode shortfall benchmark case, is drift-wave (DW) dominant. The model captures essential drift wave physics through the electron pressure parallel gradient drive term in the A| | evolution. At relevant toroidal mode numbers (50-200), the leading DWs in 128913 are flutelike with high kr and require about an order of magnitude greater radial resolution than the leading RBMs in 119919. We quantify when such high kr modes must be resolved in practice. To aid eigenfunction confirmation, and to identify potential subdominant DWs, a companion eigenvalue solver for the BOUT + + models is under development. Prepared by UCSD under Contract Number DE-FG02-06ER54871.

Transport of light, trace impurities in Alcator C-Mod

NASA Astrophysics Data System (ADS)

Rowan, W. L.; Bespamyatnov, I. O.; Liao, K. T.; Horton, W.; Fu, X. R.; Hughes, J. W.

2012-10-01

Light impurity profiles for boron were measured in ITB, H-mode, L-mode, and I-mode discharges in Alcator C-Mod. Within this wide range of modes, the profiles varied from peaked to hollow to flat. Specifically, hollow profiles are often observed in H-mode, while ITBs produce strong peaking, and L-mode produces moderate peaking. I-mode discharges are characterized by flat impurity profiles. For the study reported here, the profiles were measured with charge exchange recombination spectroscopy. The dependences of Rv/D were sought on dimensionless quantities including ion density scale length, effective charge, collisionality, and temperature scale length. We find that neoclassical transport consistently underestimates the measured transport. The excess measured transport is assumed to be turbulent. The strongest dependence of Rv/D is with temperature scale length. In addition, the measured transport was compared with the prediction of an analytical theory of drift wave turbulence that identifies transport implications for drift waves driven by ion and impurity density gradients.

Fluctuation dynamics in reconnecting current sheets

NASA Astrophysics Data System (ADS)

von Stechow, Adrian; Grulke, Olaf; Ji, Hantao; Yamada, Masaaki; Klinger, Thomas

2015-11-01

During magnetic reconnection, a highly localized current sheet forms at the boundary between opposed magnetic fields. Its steep perpendicular gradients and fast parallel drifts can give rise to a range of instabilities which can contribute to the overall reconnection dynamics. In two complementary laboratory reconnection experiments, MRX (PPPL, Princeton) and VINETA.II (IPP, Greifswald, Germany), magnetic fluctuations are observed within the current sheet. Despite the large differences in geometries (toroidal vs. linear), plasma parameters (high vs. low beta) and magnetic configuration (low vs. high magnetic guide field), similar broadband fluctuation characteristics are observed in both experiments. These are identified as Whistler-like fluctuations in the lower hybrid frequency range that propagate along the current sheet in the electron drift direction. They are intrinsic to the localized current sheet and largely independent of the slower reconnection dynamics. This contribution characterizes these magnetic fluctuations within the wide parameter range accessible by both experiments. Specifically, the fluctuation spectra and wave dispersion are characterized with respect to the magnetic topology and plasma parameters of the reconnecting current sheet.

The truncated conjugate gradient (TCG), a non-iterative/fixed-cost strategy for computing polarization in molecular dynamics: Fast evaluation of analytical forces

NASA Astrophysics Data System (ADS)

Aviat, Félix; Lagardère, Louis; Piquemal, Jean-Philip

2017-10-01

In a recent paper [F. Aviat et al., J. Chem. Theory Comput. 13, 180-190 (2017)], we proposed the Truncated Conjugate Gradient (TCG) approach to compute the polarization energy and forces in polarizable molecular simulations. The method consists in truncating the conjugate gradient algorithm at a fixed predetermined order leading to a fixed computational cost and can thus be considered "non-iterative." This gives the possibility to derive analytical forces avoiding the usual energy conservation (i.e., drifts) issues occurring with iterative approaches. A key point concerns the evaluation of the analytical gradients, which is more complex than that with a usual solver. In this paper, after reviewing the present state of the art of polarization solvers, we detail a viable strategy for the efficient implementation of the TCG calculation. The complete cost of the approach is then measured as it is tested using a multi-time step scheme and compared to timings using usual iterative approaches. We show that the TCG methods are more efficient than traditional techniques, making it a method of choice for future long molecular dynamics simulations using polarizable force fields where energy conservation matters. We detail the various steps required for the implementation of the complete method by software developers.

The truncated conjugate gradient (TCG), a non-iterative/fixed-cost strategy for computing polarization in molecular dynamics: Fast evaluation of analytical forces.

PubMed

Aviat, Félix; Lagardère, Louis; Piquemal, Jean-Philip

2017-10-28

In a recent paper [F. Aviat et al., J. Chem. Theory Comput. 13, 180-190 (2017)], we proposed the Truncated Conjugate Gradient (TCG) approach to compute the polarization energy and forces in polarizable molecular simulations. The method consists in truncating the conjugate gradient algorithm at a fixed predetermined order leading to a fixed computational cost and can thus be considered "non-iterative." This gives the possibility to derive analytical forces avoiding the usual energy conservation (i.e., drifts) issues occurring with iterative approaches. A key point concerns the evaluation of the analytical gradients, which is more complex than that with a usual solver. In this paper, after reviewing the present state of the art of polarization solvers, we detail a viable strategy for the efficient implementation of the TCG calculation. The complete cost of the approach is then measured as it is tested using a multi-time step scheme and compared to timings using usual iterative approaches. We show that the TCG methods are more efficient than traditional techniques, making it a method of choice for future long molecular dynamics simulations using polarizable force fields where energy conservation matters. We detail the various steps required for the implementation of the complete method by software developers.

A gyrokinetic perspective on the JET-ILW pedestal

NASA Astrophysics Data System (ADS)

Hatch, D. R.; Kotschenreuther, M.; Mahajan, S.; Valanju, P.; Liu, X.

2017-03-01

JET has been unable to recover historical confinement levels when operating with an ITER-like wall (ILW) due largely to the inaccessibility of high pedestal temperatures. Finding a path to overcome this challenge is of utmost importance for both a prospective JET DT campaign and for future ITER operation. Gyrokinetic simulations (using the Gene code) quantitatively capture experimental transport levels for a representative experimental discharge and qualitatively recover the major experimental trends. Microtearing turbulence is a major transport mechanisms for the low-temperature pedestals characteristic of unseeded JET-ILW discharges. At higher temperatures and/or lower {ρ\\ast} , we identify electrostatic ITG transport of a type that is strongly shear-suppressed on smaller machines. Consistent with observations, this transport mechanism is strongly reduced by the presence of a low-Z impurity (e.g. carbon or nitrogen at the level of {{Z}\\text{eff}}∼ 2 ), recovering the accessibility of high pedestal temperatures. Notably, simulations based on dimensionless {ρ\\ast} scans recover historical scaling behavior except in the unique JET-ILW parameter regime where ITG turbulence becomes important. Our simulations also elucidate the observed degradation of confinement caused by gas puffing, emphasizing the important role of the density pedestal structure. This study maps out important regions of parameter space, providing insights that may point to optimal physical regimes that can enable the recovery of high pedestal temperatures on JET.

On the Spatial Power Spectrum of the E x B Gradient Drift Instability in Ionospheric Plasma Clouds.

DTIC Science & Technology

1981-04-14

Perkins et al., 1973]. In reality, an artificially injected plasma cloud will, initially, be two- dimensional in the plane perpendicular to the magnetic...Motion of Artificial Ion Clouds in the Upper Atmosphere, Planet. Space Sci., 15, 1, 1967. Kelley, M.C., K.D. Baker, and J.C. Ulwick, Late Time Barium...42960 COMiANDER WORLOA’AY POS’AL CENTER J.S. ARMY MISSILE INTELLIGENCE AGENCY "’OS ANGELES, CA. 90009 REDSTONE ARSENAL, AL 35809 OICY ATTN CODE 52 0ICY

Lagrangian statistics of mesoscale turbulence in a natural environment: The Agulhas return current.

PubMed

Carbone, Francesco; Gencarelli, Christian N; Hedgecock, Ian M

2016-12-01

The properties of mesoscale geophysical turbulence in an oceanic environment have been investigated through the Lagrangian statistics of sea surface temperature measured by a drifting buoy within the Agulhas return current, where strong temperature mixing produces locally sharp temperature gradients. By disentangling the large-scale forcing which affects the small-scale statistics, we found that the statistical properties of intermittency are identical to those obtained from the multifractal prediction in the Lagrangian frame for the velocity trajectory. The results suggest a possible universality of turbulence scaling.

Cavity Solitons in Vertical Cavity Surface Emitting Lasers and their Applications

NASA Astrophysics Data System (ADS)

Giudici, Massimo; Pedaci, Francesco; Caboche, Emilie; Genevet, Patrice; Barland, Stephane; Tredicce, Jorge; Tissoni, Giovanna; Lugiato, Luigi

Cavity solitons (CS) are single peak localized structures which form over a homogeneous background in the section of broad-area non linear resonator driven by a coherent holding beam. They can be switched on and off by shining a writing/ erasing local laser pulse into the optical cavity. Moreover, when a phase or amplitude gradient is introduced in the holding beam, CS are set in motion along the gradient with a speed that depends on gradient strength. The ability to address CS and to control their location as well as their motion makes them interesting for alloptical processing units. In this chapter we report on several functionalities of CS that have been experimentally implemented in a Vertical Cavity Surface Emitting Laser (VCSEL) biased below threshold. We show that CS positions in the transverse section of the resonator can be reconfigured according to a phase landscape introduced in the holding beam. CS drifting propelled by a phase gradient in the holding beam can be used for realizing an all-optical delay line. Information bits are written in form of CS at a point of the device and a time delayed version of the written information can be read elsewhere along the gradient direction. CS existence and functionalities are deeply affected by presence of device defects generated during the fabrication process and randomly distributed through the device section. The sensitivity of CS to parameters gradients can be used to probe these defects, otherwise not detectable, and mapping their positions. Finally, a periodic flow of moving CS can be obtained by the interplay between a device defect and an external parameter gradient. This suggests the possibility of engineering a CS source directly onto the device.

Aspect ratio effects on limited scrape-off layer plasma turbulence

NASA Astrophysics Data System (ADS)

Jolliet, Sébastien; Halpern, Federico D.; Loizu, Joaquim; Mosetto, Annamaria; Ricci, Paolo

2014-02-01

The drift-reduced Braginskii model describing turbulence in the tokamak scrape-off layer is written for a general magnetic configuration with a limiter. The equilibrium is then specified for a circular concentric magnetic geometry retaining aspect ratio effects. Simulations are then carried out with the help of the global, flux-driven fluid three-dimensional code GBS [Ricci et al., Plasma Phys. Controlled Fusion 54, 124047 (2012)]. Linearly, both simulations and simplified analytical models reveal a stabilization of ballooning modes. Nonlinearly, flux-driven nonlinear simulations give a pressure characteristic length whose trends are correctly captured by the gradient removal theory [Ricci and Rogers, Phys. Plasmas 20, 010702 (2013)], that assumes the profile flattening from the linear modes as the saturation mechanism. More specifically, the linear stabilization of ballooning modes is reflected by a 15% increase in the steady-state pressure gradient obtained from GBS nonlinear simulations when going from an infinite to a realistic aspect ratio.

Solar activity beyond the disk and variations of the cosmic ray gradient

NASA Technical Reports Server (NTRS)

Belov, A. V.; Dorman, L. I.; Eroshenko, E. A.; Ishkov, V. N.; Oleneva, V. A.

1985-01-01

Part of galactic cosmic rays (CR) observed near the Earth and on the Earth come from beyond-disk regions of circumsolar space. But CR of those energies which undergo substantial modulation cover too large a path across the lines of force of the interplanetary magnetic field (IMF) in order that they could provide an effective transfer of information about beyond-disk solar activity. And if it is still possible, the most probable channel for transferring such information must be a neutral layer of heliomagnetosphere in which the transverse CR transport is facilitated by their drift in an inhomogeneous magnetic field. A simple diffusion model for an expected CR variation in a neutral layer near the Earth is discussed. It is of importance that variations of the CR gradient are not at all always accompanied by considerable variations of IMF and solar wind velocity at the point of observation.

A Concept of Cross-Ferroic Plasma Turbulence

PubMed Central

Inagaki, S.; Kobayashi, T.; Kosuga, Y.; Itoh, S.-I.; Mitsuzono, T.; Nagashima, Y.; Arakawa, H.; Yamada, T.; Miwa, Y.; Kasuya, N.; Sasaki, M.; Lesur, M.; Fujisawa, A.; Itoh, K.

2016-01-01

The variety of scalar and vector fields in laboratory and nature plasmas is formed by plasma turbulence. Drift-wave fluctuations, driven by density gradients in magnetized plasmas, are known to relax the density gradient while they can generate flows. On the other hand, the sheared flow in the direction of magnetic fields causes Kelvin-Helmholtz type instabilities, which mix particle and momentum. These different types of fluctuations coexist in laboratory and nature, so that the multiple mechanisms for structural formation exist in extremely non-equilibrium plasmas. Here we report the discovery of a new order in plasma turbulence, in which chained structure formation is realized by cross-interaction between inhomogeneities of scalar and vector fields. The concept of cross-ferroic turbulence is developed, and the causal relation in the multiple mechanisms behind structural formation is identified, by measuring the relaxation rate and dissipation power caused by the complex turbulence-driven flux. PMID:26917218

Generation of Plasma Density Irregularities in the Midlatitude/Subauroral F Region

NASA Astrophysics Data System (ADS)

Mishin, E. V.

2017-12-01

A concise review is given of the current state of the theoretical understanding of the creation of small- and meso-scale plasma density irregularities in the midlatitude/subauroral F region during quiet and disturbed periods. The former are discussed in terms of the temperature gradient instability (TGI) in the vicinity of the ionospheric projection of the plasmapause and the Perkins instability. During active conditions some part of the midlatitude ionosphere becomes the subauroral region dominated by enhanced westward flows (SAPS and SAID) driven by poleward electric fields. Their irregular, often nonlinear wave structure leads to the formation of plasma density irregularities in the plasmasphere and conjugate ionosphere. Here, meso-scale irregularities are due to the positive feedback magnetosphere-ionosphere coupling instability, while small scales resulted from the gradient drift instability (GDI), temperature GDI, and the ion frictional heating instability. The theoretical predictions are compared with satellite observations in the perturbed subauroral geospace.

Multi-water-bag models of ion temperature gradient instability in cylindrical geometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coulette, David; Besse, Nicolas

2013-05-15

Ion temperature gradient instabilities play a major role in the understanding of anomalous transport in core fusion plasmas. In the considered cylindrical geometry, ion dynamics is described using a drift-kinetic multi-water-bag model for the parallel velocity dependency of the ion distribution function. In a first stage, global linear stability analysis is performed. From the obtained normal modes, parametric dependencies of the main spectral characteristics of the instability are then examined. Comparison of the multi-water-bag results with a reference continuous Maxwellian case allows us to evaluate the effects of discrete parallel velocity sampling induced by the Multi-Water-Bag model. Differences between themore » global model and local models considered in previous works are discussed. Using results from linear, quasilinear, and nonlinear numerical simulations, an analysis of the first stage saturation dynamics of the instability is proposed, where the divergence between the three models is examined.« less

Erratum: ``Evidence that a Deep Meridional Flow Sets the Sunspot Cycle Period'' (ApJ, 589, 665 [2003])

NASA Astrophysics Data System (ADS)

Hathaway, David H.; Nandy, Dibyendu; Wilson, Robert M.; Reichmann, Edwin J.

2004-02-01

An error was made in entering the data used in Figure 6. This changes the results concerning the length of the time lag between the variations in the meridional flow speed and those in the cycle amplitude. The final paragraph on page 667 should read: ``Finally, we study the relationship between the drift velocities and the amplitudes of the hemisphere/cycles. In Figure 5 we compare the drift velocity at the maximum of the cycle to the amplitude of that cycle for that hemisphere. There is a positive (0.5) and significant (95%) correlation between the two. However, an even stronger relationship is found between the drift velocity and the amplitude of the N+2 cycle. The correlation is stronger (0.7) and more significant (99%), as shown in Figure 6. This relationship is suggestive of a ``memory'' in the solar cycle, again a property of dynamo models that use meridional circulation. Indeed, the two-cycle lag is precisely the relationship found by Charbonneau & Dikpati (ApJ, 589, 665 [2003]). This behavior is, however, more difficult to interpret, and we elaborate on this in the next section. In either case, these correlations only explain part of the variance in cycle amplitude (25% for the current cycle and 50% for the N+2 cycle). Obviously, other mechanisms, such as variations in the gradient in the rotation rate, also contribute to the cycle amplitude variations. Our investigation of possible connections between drift rates and the amplitudes of the N+1 and N+3 cycles gives no significant correlations at these alternative time lags.'' The revised Figure 6 and its caption are given below

ISO Key Project: Exploring the full range of QUASAR/AGN properties

NASA Technical Reports Server (NTRS)

Wilkes, B.

1998-01-01

The PIA (PHOT Interactive Analysis) software was upgraded as new releases were made available by VILSPA. We have continued to analyze our data but, given the large number of still outstanding problems with the calibration and analysis (listed below), we remain unable to move forward on our scientific program. We have concentrated on observations with long (256 sec) exposure times to avoid the most extreme detector responsivity drift problems which occur with a change in observed flux level, ie. as one begins to observe a new target. There remain a significant number of problems with analyzing these data including: (1) the default calibration source (FCS) observations early in the mission were too short and affected by strong detector responsivity drifts; (2) the calibration of the FCS sources is not yet well-understood, particularly for chopped observations (which includes most of ours); (3) the detector responsivity drift is not well-understood and models are only now becoming available for fitting chopped data; (4) charged particle hits on the detector cause transient responsivity drifts which need to be corrected; (5) the "flat-field" calibration of the long-wavelength (array) detectors: C1OO, C200 leaves significant residual structure and so needs to be improved;(6) the vignetting correction, which affects detected flux levels in the array detectors, is not yet available; (7) the intra-filter calibrations are not yet available; and (8) the background above 60 microns has a significant gradient which results in spurious positive and negative "detections" in chopped observations. ISO Observation planning, conferences and talks, ground based observing and other grant related activities are also briefly discussed.

Genetically distinct populations of northern shrimp, Pandalus borealis, in the North Atlantic: adaptation to different temperatures as an isolation factor.

PubMed

Jorde, Per Erik; Søvik, Guldborg; Westgaard, Jon-Ivar; Albretsen, Jon; André, Carl; Hvingel, Carsten; Johansen, Torild; Sandvik, Anne Dagrun; Kingsley, Michael; Jørstad, Knut Eirik

2015-04-01

The large-scale population genetic structure of northern shrimp, Pandalus borealis, was investigated over the species' range in the North Atlantic, identifying multiple genetically distinct groups. Genetic divergence among sample localities varied among 10 microsatellite loci (range: FST = -0.0002 to 0.0475) with a highly significant average (FST = 0.0149; P < 0.0001). In contrast, little or no genetic differences were observed among temporal replicates from the same localities (FST = 0.0004; P = 0.33). Spatial genetic patterns were compared to geographic distances, patterns of larval drift obtained through oceanographic modelling, and temperature differences, within a multiple linear regression framework. The best-fit model included all three factors and explained approximately 29% of all spatial genetic divergence. However, geographic distance and larval drift alone had only minor effects (2.5-4.7%) on large-scale genetic differentiation patterns, whereas bottom temperature differences explained most (26%). Larval drift was found to promote genetic homogeneity in parts of the study area with strong currents, but appeared ineffective across large temperature gradients. These findings highlight the breakdown of gene flow in a species with a long pelagic larval phase (up to 3 months) and indicate a role for local adaptation to temperature conditions in promoting evolutionary diversification and speciation in the marine environment. © 2015 John Wiley & Sons Ltd.

At Limits of Life: Multidisciplinary Insights Reveal Environmental Constraints on Biotic Diversity in Continental Antarctica

PubMed Central

Magalhães, Catarina; Stevens, Mark I.; Cary, S. Craig; Ball, Becky A.; Storey, Bryan C.; Wall, Diana H.; Türk, Roman; Ruprecht, Ulrike

2012-01-01

Multitrophic communities that maintain the functionality of the extreme Antarctic terrestrial ecosystems, while the simplest of any natural community, are still challenging our knowledge about the limits to life on earth. In this study, we describe and interpret the linkage between the diversity of different trophic level communities to the geological morphology and soil geochemistry in the remote Transantarctic Mountains (Darwin Mountains, 80°S). We examined the distribution and diversity of biota (bacteria, cyanobacteria, lichens, algae, invertebrates) with respect to elevation, age of glacial drift sheets, and soil physicochemistry. Results showed an abiotic spatial gradient with respect to the diversity of the organisms across different trophic levels. More complex communities, in terms of trophic level diversity, were related to the weakly developed younger drifts (Hatherton and Britannia) with higher soil C/N ratio and lower total soluble salts content (thus lower conductivity). Our results indicate that an increase of ion concentration from younger to older drift regions drives a succession of complex to more simple communities, in terms of number of trophic levels and diversity within each group of organisms analysed. This study revealed that integrating diversity across multi-trophic levels of biotic communities with abiotic spatial heterogeneity and geological history is fundamental to understand environmental constraints influencing biological distribution in Antarctic soil ecosystems. PMID:23028563

Generation of region 1 current by magnetospheric pressure gradients

NASA Technical Reports Server (NTRS)

Yang, Y. S.; Spiro, R. W.; Wolf, R. A.

1994-01-01

The Rice Convection Model (RCM) is used to illustrate theoretical possibilities for generating region 1 Birkeland currents by pressure gradients on closed field lines in the Earth's magnetosphere. Inertial effects and viscous forces are neglected. The RCM is applied to idealized cases, to emphasize the basic physical ideas rather than realistic representation of the actual magnetosphere. Ionospheric conductance is taken to be uniform, and the simplest possible representations of the magnetospheric plasma are used. Three basic cases are considered: (1) the case of pure northward Interplanetary Magnetic Field (IMF), with cusp merging assumed to create new closed field lines near the nose of the magnetosphere, following the suggestion by Song and Russell (1992); (2) the case where Dungey-type reconnection occurs at the nose, but magnetosheath plasma somehow enters closed field lines on the dawnside and duskside of the merging region, causing a pressure-driven low-latitude boundary layer; and (3) the case where Dungey-type reconnection occurs at the nose, but region 1 currents flow on sunward drifting plasma sheet field lines. In case 1, currents of region 1 sense are generated by pressure gradients, but those currents do not supply the power for ionospheric convection. Results for case 2 suggest that pressure gradients at the inner edge of the low-latitude boundary layer might generate a large fraction of the region 1 Birkeland currents that drive magnetospheric convection. Results for case 3 indicate that pressure gradients in the plasma sheet could provide part of the region 1 current.

Thermal field theory and generalized light front quantization

NASA Astrophysics Data System (ADS)

Weldon, H. Arthur

2003-04-01

The dependence of thermal field theory on the surface of quantization and on the velocity of the heat bath is investigated by working in general coordinates that are arbitrary linear combinations of the Minkowski coordinates. In the general coordinates the metric tensor gμν¯ is nondiagonal. The Kubo-Martin-Schwinger condition requires periodicity in thermal correlation functions when the temporal variable changes by an amount -i/(T(g00¯)). Light-front quantization fails since g00¯=0; however, various related quantizations are possible.

Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species.

PubMed

Torroba-Balmori, Paloma; Budde, Katharina B; Heer, Katrin; González-Martínez, Santiago C; Olsson, Sanna; Scotti-Saintagne, Caroline; Casalis, Maxime; Sonké, Bonaventure; Dick, Christopher W; Heuertz, Myriam

2017-01-01

The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations.

Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species

PubMed Central

Torroba-Balmori, Paloma; Budde, Katharina B.; Heer, Katrin; González-Martínez, Santiago C.; Olsson, Sanna; Scotti-Saintagne, Caroline; Sonké, Bonaventure; Dick, Christopher W.

2017-01-01

The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations. PMID:28771629

Real-time distortion correction of spiral and echo planar images using the gradient system impulse response function.

PubMed

Campbell-Washburn, Adrienne E; Xue, Hui; Lederman, Robert J; Faranesh, Anthony Z; Hansen, Michael S

2016-06-01

MRI-guided interventions demand high frame rate imaging, making fast imaging techniques such as spiral imaging and echo planar imaging (EPI) appealing. In this study, we implemented a real-time distortion correction framework to enable the use of these fast acquisitions for interventional MRI. Distortions caused by gradient waveform inaccuracies were corrected using the gradient impulse response function (GIRF), which was measured by standard equipment and saved as a calibration file on the host computer. This file was used at runtime to calculate the predicted k-space trajectories for image reconstruction. Additionally, the off-resonance reconstruction frequency was modified in real time to interactively deblur spiral images. Real-time distortion correction for arbitrary image orientations was achieved in phantoms and healthy human volunteers. The GIRF-predicted k-space trajectories matched measured k-space trajectories closely for spiral imaging. Spiral and EPI image distortion was visibly improved using the GIRF-predicted trajectories. The GIRF calibration file showed no systematic drift in 4 months and was demonstrated to correct distortions after 30 min of continuous scanning despite gradient heating. Interactive off-resonance reconstruction was used to sharpen anatomical boundaries during continuous imaging. This real-time distortion correction framework will enable the use of these high frame rate imaging methods for MRI-guided interventions. Magn Reson Med 75:2278-2285, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Real-time distortion correction of spiral and echo planar images using the gradient system impulse response function

PubMed Central

Campbell-Washburn, Adrienne E; Xue, Hui; Lederman, Robert J; Faranesh, Anthony Z; Hansen, Michael S

2015-01-01

Purpose MRI-guided interventions demand high frame-rate imaging, making fast imaging techniques such as spiral imaging and echo planar imaging (EPI) appealing. In this study, we implemented a real-time distortion correction framework to enable the use of these fast acquisitions for interventional MRI. Methods Distortions caused by gradient waveform inaccuracies were corrected using the gradient impulse response function (GIRF), which was measured by standard equipment and saved as a calibration file on the host computer. This file was used at runtime to calculate the predicted k-space trajectories for image reconstruction. Additionally, the off-resonance reconstruction frequency was modified in real-time to interactively de-blur spiral images. Results Real-time distortion correction for arbitrary image orientations was achieved in phantoms and healthy human volunteers. The GIRF predicted k-space trajectories matched measured k-space trajectories closely for spiral imaging. Spiral and EPI image distortion was visibly improved using the GIRF predicted trajectories. The GIRF calibration file showed no systematic drift in 4 months and was demonstrated to correct distortions after 30 minutes of continuous scanning despite gradient heating. Interactive off-resonance reconstruction was used to sharpen anatomical boundaries during continuous imaging. Conclusions This real-time distortion correction framework will enable the use of these high frame-rate imaging methods for MRI-guided interventions. PMID:26114951

On the emergence of macroscopic transport barriers from staircase structures

NASA Astrophysics Data System (ADS)

Ashourvan, Arash; Diamond, P. H.

2017-01-01

This paper presents a theory for the formation and evolution of coupled density staircases and zonal shear profiles in a simple model of drift-wave turbulence. Density, vorticity, and fluctuation potential enstrophy are the fields evolved in this system. Formation of staircase structures is due to inhomogeneous mixing of generalized potential vorticity (PV), resulting in the sharpening of density and vorticity gradients in some regions, and weakening them in others. When the PV gradients steepen, the density staircase structure develops into a lattice of mesoscale "jumps," and "steps," which are, respectively, the regions of local gradient steepening and flattening. The jumps merge and migrate in radius, leading to the development of macroscale profile structures from mesoscale elements. The positive feedback process, which drives the staircase formation occurs via a Rhines scale dependent mixing length. We present extensive studies of bifurcation physics of the global state, including results on the global flux-gradient relations (flux landscapes) predicted by the model. Furthermore, we demonstrate that, depending on the sources and boundary conditions, either a region of enhanced confinement, or a region with strong turbulence can form at the edge. This suggests that the profile self-organization is a global process, though one which can be described by a local, but nonlinear model. This model is the first to demonstrate how the mesoscale condensation of staircases leads to global states of enhanced confinement.

Analytical modeling and experimental characterization of chemotaxis in Serratia marcescens

NASA Astrophysics Data System (ADS)

Zhuang, Jiang; Wei, Guopeng; Wright Carlsen, Rika; Edwards, Matthew R.; Marculescu, Radu; Bogdan, Paul; Sitti, Metin

2014-05-01

This paper presents a modeling and experimental framework to characterize the chemotaxis of Serratia marcescens (S. marcescens) relying on two-dimensional and three-dimensional tracking of individual bacteria. Previous studies mainly characterized bacterial chemotaxis based on population density analysis. Instead, this study focuses on single-cell tracking and measuring the chemotactic drift velocity VC from the biased tumble rate of individual bacteria on exposure to a concentration gradient of l-aspartate. The chemotactic response of S. marcescens is quantified over a range of concentration gradients (10-3 to 5 mM/mm) and average concentrations (0.5×10-3 to 2.5 mM). Through the analysis of a large number of bacterial swimming trajectories, the tumble rate is found to have a significant bias with respect to the swimming direction. We also verify the relative gradient sensing mechanism in the chemotaxis of S. marcescens by measuring the change of VC with the average concentration and the gradient. The applied full pathway model with fitted parameters matches the experimental data. Finally, we show that our measurements based on individual bacteria lead to the determination of the motility coefficient μ (7.25×10-6 cm2/s) of a population. The experimental characterization and simulation results for the chemotaxis of this bacterial species contribute towards using S. marcescens in chemically controlled biohybrid systems.

New Model for Ionospheric Irregularities at Mars

NASA Astrophysics Data System (ADS)

Keskinen, M. J.

2018-03-01

A new model for ionospheric irregularities at Mars is presented. It is shown that wind-driven currents in the dynamo region of the Martian ionosphere can be unstable to the electromagnetic gradient drift instability. This plasma instability can generate ionospheric density and magnetic field irregularities with scale sizes of approximately 15-20 km down to a few kilometers. We show that the instability-driven magnetic field fluctuation amplitudes relative to background are correlated with the ionospheric density fluctuation amplitudes relative to background. Our results can explain recent observations made by the Mars Atmosphere and Volatile EvolutioN spacecraft in the Martian ionosphere dynamo region.

Gyro-Landau fluid models for toroidal geometry

NASA Astrophysics Data System (ADS)

Waltz, R. E.; Dominguez, R. R.; Hammett, G. W.

1992-10-01

Gyro-Landau fluid model equations provide first-order time advancement for a limited number of moments of the gyrokinetic equation, while approximately preserving the effects of the gyroradius averaging and Landau damping. This paper extends the work of Hammett and Perkins [Phys. Rev. Lett. 64, 3019 (1990)] for electrostatic motion parallel to the magnetic field and E×B motion to include the gyroaveraging linearly and the curvature drift motion. The equations are tested by comparing the ion-temperature-gradient mode linear growth rates for the model equations with those of the exact gyrokinetic theory over a full range of parameters.

Thermally Generated Spin Signals in a Nondegenerate Silicon Spin Valve

NASA Astrophysics Data System (ADS)

Yamashita, Naoto; Ando, Yuichiro; Koike, Hayato; Miwa, Shinji; Suzuki, Yoshishige; Shiraishi, Masashi

2018-05-01

Thermally generated spin signals are observed in a nondegenerate Si spin valve. The spin-dependent Seebeck effect is used for thermal spin-signal generation. A thermal gradient of about 200 mK at the interface of Fe and Si enables the generation of a spin voltage of 8 μ V at room temperature. A simple expansion of the conventional spin-drift-diffusion model that takes into account the spin-dependent Seebeck effect shows that semiconductor materials are more promising for thermal spin-signal generation comparing than metallic materials, and thus enable efficient heat recycling in semiconductor spin devices.

Flow induced crystallisation of penetrable particles

NASA Astrophysics Data System (ADS)

Scacchi, Alberto; Brader, Joseph M.

2018-03-01

For a system of Brownian particles interacting via a soft exponential potential we investigate the interaction between equilibrium crystallisation and spatially varying shear flow. For thermodynamic state points within the liquid part of the phase diagram, but close to the crystallisation phase boundary, we observe that imposing a Poiseuille flow can induce nonequilibrium crystalline ordering in regions of low shear gradient. The physical mechanism responsible for this phenomenon is shear-induced particle migration, which causes particles to drift preferentially towards the center of the flow channel, thus increasing the local density in the channel center. The method employed is classical dynamical density functional theory.

Flow induced crystallisation of penetrable particles.

PubMed

Scacchi, Alberto; Brader, Joseph M

2018-03-07

For a system of Brownian particles interacting via a soft exponential potential we investigate the interaction between equilibrium crystallisation and spatially varying shear flow. For thermodynamic state points within the liquid part of the phase diagram, but close to the crystallisation phase boundary, we observe that imposing a Poiseuille flow can induce nonequilibrium crystalline ordering in regions of low shear gradient. The physical mechanism responsible for this phenomenon is shear-induced particle migration, which causes particles to drift preferentially towards the center of the flow channel, thus increasing the local density in the channel center. The method employed is classical dynamical density functional theory.

Continuation of comprehensive quality control of the itG 68Ge/68Ga generator and production of 68Ga-DOTATOC and 68Ga-PSMA-HBED-CC for clinical research studies.

PubMed

Amor-Coarasa, Alejandro; Kelly, James M; Gruca, Monika; Nikolopoulou, Anastasia; Vallabhajosula, Shankar; Babich, John W

2017-10-01

Performance of a second itG 68 Ge/ 68 Ga generator system and production of 68 Ga-DOTATOC and 68 Ga-PSMA-HBED-CC were tested over one year as an accompaniment to a previously published study (J Nucl Med. 2016;57:1402-1405). Performance of a 1951MBq 68 Ge/ 68 Ga generator was characterized and the eluate used for preparation of 68 Ga-DOTATOC and 68 Ga-PSMA-HBED-CC. Weekly elution profiles of 68 Ga elution yield and 68 Ge breakthrough were determined. 68 Ga elution yields averaged 82% (61.8-98.4%) and 68 Ge breakthrough averaged 0.002% (0.0007% to 0.004%). The radiochemical purities of 68 Ga-DOTATOC and 68 Ga-PSMA-HBED-CC were determined by HPLC analysis to be >98% and specific activity was 12.6 and 42GBq/μmol, respectively. 68 Ge contamination in the product was under the detection limit (0.00001%). Final sterile, pyrogen-free formulation of 68 Ga-DOTATOC and 68 Ga-PSMA-HBED-CC in physiologic saline with 5%-7% ethanol was achieved. Performance of a 68 Ge/ 68 Ga generator was studied over one year with satisfactory results. The generator eluate was used to synthesize 68 Ga-DOTATOC and 68 Ga-PSMA-HBED-CC on a routine basis in high purity. Copyright © 2017. Published by Elsevier Inc.

Hand shape selection in pantomimed grasping: Interaction between the dorsal and the ventral visual streams and convergence on the ventral premotor area

PubMed Central

Makuuchi, Michiru; Someya, Yoshiaki; Ogawa, Seiji; Takayama, Yoshihiro

2011-01-01

In visually guided grasping, possible hand shapes are computed from the geometrical features of the object, while prior knowledge about the object and the goal of the action influence both the computation and the selection of the hand shape. We investigated the system dynamics of the human brain for the pantomiming of grasping with two aspects accentuated. One is object recognition, with the use of objects for daily use. The subjects mimed grasping movements appropriate for an object presented in a photograph either by precision or power grip. The other is the selection of grip hand shape. We manipulated the selection demands for the grip hand shape by having the subjects use the same or different grip type in the second presentation of the identical object. Effective connectivity analysis revealed that the increased selection demands enhance the interaction between the anterior intraparietal sulcus (AIP) and posterior inferior temporal gyrus (pITG), and drive the converging causal influences from the AIP, pITG, and dorsolateral prefrontal cortex to the ventral premotor area (PMv). These results suggest that the dorsal and ventral visual areas interact in the pantomiming of grasping, while the PMv integrates the neural information of different regions to select the hand posture. The present study proposes system dynamics in visually guided movement toward meaningful objects, but further research is needed to examine if the same dynamics is found also in real grasping. PMID:21739528

The Role of the Upper Atmosphere for Dawn-Dusk and Interhemispheric Differences in the Coupled Magnetosphere-Ionosphere-Thermosphere System

NASA Astrophysics Data System (ADS)

Foerster, M.; Doornbos, E.; Haaland, S.

2016-12-01

Solar wind and IMF interaction with the geomagnetic field sets up a large-scale plasma circulation in the Earth's magnetosphere and the magnetically tightly connected ionosphere. The ionospheric ExB ion drift at polar latitudes accelerates the neutral gas as a nondivergent momentum source primarily in force balance with pressure gradients, while the neutral upper thermosphere circulation is essentially modified by apparent forces due to Earth's rotation (Coriolis and centrifugal forces) as well as advection and viscous forces. The apparent forces affect the dawn and dusk side asymmetrically, favouring a large dusk-side neutral wind vortex, while the non-dipolar portions of the Earth's magnetic field constitute significant hemispheric differences in magnetic flux and field configurations that lead to essential interhemispheric differences of the ion-neutral interaction. We present statistical studies of both the high-latitude ionospheric convection and the upper thermospheric circulation patterns based on measurements of the electron drift instrument (EDI) on board the Cluster satellites and by the accelerometer on board the CHAMP, GOCE, and Swarm spacecraft, respectively.

Nonlinear Diamagnetic Stabilization of Double Tearing Modes in Cylindrical MHD Simulations

NASA Astrophysics Data System (ADS)

Abbott, Stephen; Germaschewski, Kai

2014-10-01

Double tearing modes (DTMs) may occur in reversed-shear tokamak configurations if two nearby rational surfaces couple and begin reconnecting. During the DTM's nonlinear evolution it can enter an ``explosive'' growth phase leading to complete reconnection, making it a possible driver for off-axis sawtooth crashes. Motivated by similarities between this behavior and that of the m = 1 kink-tearing mode in conventional tokamaks we investigate diamagnetic drifts as a possible DTM stabilization mechanism. We extend our previous linear studies of an m = 2 , n = 1 DTM in cylindrical geometry to the fully nonlinear regime using the MHD code MRC-3D. A pressure gradient similar to observed ITB profiles is used, together with Hall physics, to introduce ω* effects. We find the diamagnetic drifts can have a stabilizing effect on the nonlinear DTM through a combination of large scale differential rotation and mechanisms local to the reconnection layer. MRC-3D is an extended MHD code based on the libMRC computational framework. It supports nonuniform grids in curvilinear coordinates with parallel implicit and explicit time integration.

SAPS/SAID revisited: A causal relation to the substorm current wedge

NASA Astrophysics Data System (ADS)

Mishin, Evgeny; Nishimura, Yukitoshi; Foster, John

2017-08-01

We present multispacecraft observations of enhanced flow/electric field channels in the inner magnetosphere and conjugate subauroral ionosphere, i.e., subauroral polarization streams (SAPS) near dusk and subauroral ion drifts (SAID) near midnight. The channels collocate with ring current (RC) injections lagging the onset of substorms by a few to ˜20 min, i.e., significantly shorter than the gradient-curvature drift time of tens of keV ions. The time lag is of the order of the propagation time of reconnection-injected hot plasma jets to the premidnight plasmasphere and the substorm current wedge (SCW) to dusk. The observations confirm and expand on the previous results on the SAID features that negate the paradigm of voltage and current generators. Fast-time duskside SAPS/RC injections appear intimately related to a two-loop circuit of the substorm current wedge (SCW2L). We suggest that the poleward electric field inherent in the SCW2L circuit, which demands closure of the Region 1 and Region 2 sense field-aligned currents via meridional currents, is the ultimate cause of fast RC injections and SAPS on the duskside.

SAID/SAPS Revisited: A Causal Relation to the Substorm Current Wedge

NASA Astrophysics Data System (ADS)

Mishin, E. V.

2017-12-01

We present multi-spacecraft observations of enhanced flow/electric field channels in the inner magnetosphere and conjugate subauroral ionosphere, i.e., subauroral polarization streams (SAPS) near dusk and subauroral ion drifts (SAID) near midnight. The channels collocate with ring current (RC) injections lagging the onset of substorms by a few to ˜20 minutes, i.e., significantly shorter than the gradient-curvature drift time of tens of keV ions. The time lag is of the order of the propagation time of reconnection-injected hot plasma jets to the premidnight plasmasphere and the substorm current wedge (SCW) to dusk. The observations confirm and expand on the previous results on the SAID features that negate the paradigm of voltage and current generators. Fast-time duskside SAPS/RC injections appear intimately related to a two-loop circuit of the substorm current wedge (SCW2L). We suggest that the poleward electric field inherent in the SCW2L circuit, which demands closure of the Region 1- and Region 2-sense field-aligned currents via meridional currents, is the ultimate cause of fast RC injections and SAPS on the duskside.

Simulation of Ultra-Small MOSFETs Using a 2-D Quantum-Corrected Drift-Diffusion Model

NASA Technical Reports Server (NTRS)

Biegel, Bryan A.; Rafferty, Conor S.; Yu, Zhiping; Dutton, Robert W.; Ancona, Mario G.; Saini, Subhash (Technical Monitor)

1998-01-01

We describe an electronic transport model and an implementation approach that respond to the challenges of device modeling for gigascale integration. We use the density-gradient (DG) transport model, which adds tunneling and quantum smoothing of carrier density profiles to the drift-diffusion model. We present the current implementation of the DG model in PROPHET, a partial differential equation solver developed by Lucent Technologies. This implementation approach permits rapid development and enhancement of models, as well as run-time modifications and model switching. We show that even in typical bulk transport devices such as P-N diodes and BJTs, DG quantum effects can significantly modify the I-V characteristics. Quantum effects are shown to be even more significant in small, surface transport devices, such as sub-0.1 micron MOSFETs. In thin-oxide MOS capacitors, we find that quantum effects may reduce gate capacitance by 25% or more. The inclusion of quantum effects in simulations dramatically improves the match between C-V simulations and measurements. Significant quantum corrections also occur in the I-V characteristics of short-channel MOSFETs due to the gate capacitance correction.

Turbulence, intermittency, and transport in the limiter shadow in LAPD and ET

NASA Astrophysics Data System (ADS)

Carter, Troy

2002-11-01

Turbulence in the scrape-off-layer (SOL) of tokamaks is often found to be intermittent, a tendency which has been attributed to the presence and transport of coherent structures (``blobs''). A recent theory [S.I. Krasheninnikov, shape Phys. Lett. A series 283, 368 (2001)] suggests that transport of these structures is controlled by nabla B and curvature drift driven polarization. I will present a study of turbulence and intermittency in limited discharges in the Large Plasma Device (LAPD) (where rotation may substitute for nabla B drift) and in the Electric Tokamak (ET) at UCLA. In LAPD, strongly intermittent turbulence in the 1-50 kHz range is observed localized to limiter produced gradients. A detailed study of these fluctuations will be presented, focusing on transport, dependencies on magnetic field, plasma density, and the presence of flows or rotation. A comparison with initial probe and imaging measurements of fluctuation characteristics in the SOL of the Electric Tokamak, in discharges with either an axisymmetric belt limiter or a toroidally localized limiter, will also be presented.

Energy dynamics in a simulation of LAPD turbulence

NASA Astrophysics Data System (ADS)

Friedman, B.; Carter, T. A.; Umansky, M. V.; Schaffner, D.; Dudson, B.

2012-10-01

Energy dynamics calculations in a 3D fluid simulation of drift wave turbulence in the linear Large Plasma Device [W. Gekelman et al., Rev. Sci. Instrum. 62, 2875 (1991)] illuminate processes that drive and dissipate the turbulence. These calculations reveal that a nonlinear instability dominates the injection of energy into the turbulence by overtaking the linear drift wave instability that dominates when fluctuations about the equilibrium are small. The nonlinear instability drives flute-like (k∥=0) density fluctuations using free energy from the background density gradient. Through nonlinear axial wavenumber transfer to k∥≠0 fluctuations, the nonlinear instability accesses the adiabatic response, which provides the requisite energy transfer channel from density to potential fluctuations as well as the phase shift that causes instability. The turbulence characteristics in the simulations agree remarkably well with experiment. When the nonlinear instability is artificially removed from the system through suppressing k∥=0 modes, the turbulence develops a coherent frequency spectrum which is inconsistent with experimental data. This indicates the importance of the nonlinear instability in producing experimentally consistent turbulence.

A preliminary estimate of geoid-induced variations in repeat orbit satellite altimeter observations

NASA Technical Reports Server (NTRS)

Brenner, Anita C.; Beckley, B. D.; Koblinsky, C. J.

1990-01-01

Altimeter satellites are often maintained in a repeating orbit to facilitate the separation of sea-height variations from the geoid. However, atmospheric drag and solar radiation pressure cause a satellite orbit to drift. For Geosat this drift causes the ground track to vary by + or - 1 km about the nominal repeat path. This misalignment leads to an error in the estimates of sea surface height variations because of the local slope in the geoid. This error has been estimated globally for the Geosat Exact Repeat Mission using a mean sea surface constructed from Geos 3 and Seasat altimeter data. Over most of the ocean the geoid gradient is small, and the repeat-track misalignment leads to errors of only 1 to 2 cm. However, in the vicinity of trenches, continental shelves, islands, and seamounts, errors can exceed 20 cm. The estimated error is compared with direct estimates from Geosat altimetry, and a strong correlation is found in the vicinity of the Tonga and Aleutian trenches. This correlation increases as the orbit error is reduced because of the increased signal-to-noise ratio.

Radiosynthesis of clinical doses of 68Ga-DOTATATE (GalioMedix™) and validation of organic-matrix-based 68Ge/68Ga generators

PubMed Central

Tworowska, Izabela; Ranganathan, David; Thamake, Sanjay; Delpassand, Ebrahim; Mojtahedi, Alireza; Schultz, Michael K.; Zhernosekov, Konstantin; Marx, Sebastian

2017-01-01

Introduction 68Ga-DOTATATE is a radiolabeled peptide-based agonist that targets somatostatin receptors overexpressed in neuroendocrine tumors. Here, we present our results on validation of organic matrix 68Ge/68Ga generators (ITG GmbH) applied for radiosynthesis of the clinical doses of 68Ga-DOTATATE (GalioMedixTM). Methods The clinical grade of DOTATATE (25 µg±5µg) compounded in 1MNaOAc at pH=5.5 was labeled manually with 514±218MBq (13.89±5.9 mCi) of 68Ga eluate in 0.05 N HCl at 95 °C for 10 min. The radiochemical purity of the final dose was validated using radio-TLC. The quality control of clinical doses included tests of their osmolarity, endotoxin level, radionuclide identity, filter integrity, pH, sterility and 68Ge breakthrough. Results The final dose of 272±126MBq (7.35±3.4 mCi) of 68Ga-DOTATATE was produced with a radiochemical yield (RCY) of 99%±1%. The total time required for completion of radiolabeling and quality control averaged approximately 35 min. This resulted in delivery of 50% ± 7% of 68Ga-DOTATATE at the time of calibration (not decay corrected). Conclusions 68Ga eluted from the generator was directly applied for labeling of DOTA-peptide with no additional pre-concentration or pre-purification of isotope. The low acidity of 68Ga eluate allows for facile synthesis of clinical doses with radiochemical and radionuclide purity higher than 98% and average activity of 272 ± 126 MBq (7.3 ± 3 mCi). There is no need for post-labeling C18 Sep-Pak purification of final doses of radiotracer. Advances in knowledge and implications for patient care. The clinical interest in validation of 68Galabeled agents has increased in the past years due to availability of generators from different vendors (Eckert-Ziegler, ITG, iThemba), favorable approach of U.S. FDA agency to initiate clinical trials, and collaboration of U.S. centers with leading EU clinical sites. The list of 68Ga-labeled tracers evaluated in clinical studies should growth because of the sensitivity of PET technique, the simplicity of the shakebake approach for the dose preparation and reliability of 68Ge/68Ga generators. Our studies have confirmed the reproducible elution profile, and high reliability of ITG GmbH generators required for routine doses preparation according to FDA recommendations. PMID:26702783

Radiosynthesis of clinical doses of ⁶⁸Ga-DOTATATE (GalioMedix™) and validation of organic-matrix-based ⁶⁸Ge/⁶⁸Ga generators.

PubMed

Tworowska, Izabela; Ranganathan, David; Thamake, Sanjay; Delpassand, Ebrahim; Mojtahedi, Alireza; Schultz, Michael K; Zhernosekov, Konstantin; Marx, Sebastian

2016-01-01

68Ga-DOTATATE is a radiolabeled peptide-based agonist that targets somatostatin receptors overexpressed in neuroendocrine tumors. Here, we present our results on validation of organic matrix 68Ge/68Ga generators (ITG GmbH) applied for radiosynthesis of the clinical doses of 68Ga-DOTATATE (GalioMedixTM). The clinical grade of DOTATATE (25 μg±5 μg) compounded in 1 M NaOAc at pH=5.5 was labeled manually with 514±218 MBq (13.89±5.9 mCi) of 68Ga eluate in 0.05 N HCl at 95°C for 10 min. The radiochemical purity of the final dose was validated using radio-TLC. The quality control of clinical doses included tests of their osmolarity, endotoxin level, radionuclide identity, filter integrity, pH, sterility and 68Ge breakthrough. The final dose of 272±126 MBq (7.35±3.4 mCi) of 68Ga-DOTATATE was produced with a radiochemical yield (RCY) of 99%±1%. The total time required for completion of radiolabeling and quality control averaged approximately 35 min. This resulted in delivery of 50%±7% of 68Ga-DOTATATE at the time of calibration (not decay corrected). 68Ga eluted from the generator was directly applied for labeling of DOTA-peptide with no additional pre-concentration or pre-purification of isotope. The low acidity of 68Ga eluate allows for facile synthesis of clinical doses with radiochemical and radionuclide purity higher than 98% and average activity of 272±126 MBq (7.3±3 mCi). There is no need for post-labeling C18 Sep-Pak purification of final doses of radiotracer. Advances in knowledge and implications for patient care. The clinical interest in validation of 68Galabeled agents has increased in the past years due to availability of generators from different vendors (Eckert-Ziegler, ITG, iThemba), favorable approach of U.S. FDA agency to initiate clinical trials, and collaboration of U.S. centers with leading EU clinical sites. The list of 68Ga-labeled tracers evaluated in clinical studies should growth because of the sensitivity of PET technique, the simplicity of the shakebake approach for the dose preparation and reliability of 68Ge/68Ga generators. Our studies have confirmed the reproducible elution profile, and high reliability of ITG GmbH generators required for routine doses preparation according to FDA recommendations. Copyright © 2015 Elsevier Inc. All rights reserved.

Structures in Ionospheric Number Density and Velocity Associated with Polar Cap Ionization Patches

NASA Technical Reports Server (NTRS)

Kivanc, O.; Heelis, R. A.

1997-01-01

Spectral characteristics of polar cap F region irregularities on large density gradients associated with polar ionization patches are studied using in situ measurements made by the Dynamics Explorer 2 (DE 2) spacecraft. The 18 patches studied in this paper were identified by the algorithm introduced by Coley and Heelis, and they were encountered during midnight-noon passes of the spacecraft. Density and velocity spectra associated with these antisunward convecting patches are analyzed in detail. Observations indicate the presence of structure on most patches regardless of the distance between the patch and the cusp where they are believed to develop. Existence of structure on both leading and trailing edges is established when such edges exist. Results, which show no large dependence of Delta N/N power on the sign of the edge gradient del N, do not allow the identification of leading and trailing edges of the patch. The Delta N/N is an increasing function of gradient del N regardless of the sign of the gradient. The correlation between Delta N/N and Delta V is generally poor, but for a given intensity in Delta V, Delta N/N maximizes in regions of large gradients in N. There is evidence for the presence of unstructured patches that seem to co-exist with unstructured horizontal velocities. Slightly smaller spectral indices for trailing edges support the presence of the E X B drift instability. Although this instability is found to be operating in some cases, results suggest that stirring may be a significant contributor to kilometer-size structures in the polar cap.

Seabird drift as a proxy to estimate surface currents in the western Mediterranean?

NASA Astrophysics Data System (ADS)

Gomez-Navarro, Laura; Sánchez-Román, Antonio; Pascual, Ananda; Fablet, Ronan; Hernandez-Carrasco, Ismael; Mason, Evan; Arcos, José Manuel; Oro, Daniel

2017-04-01

Seabird trajectories can be used as proxies to investigate the dynamics of marine systems and their spatiotemporal evolution. Previous studies have mainly been based on analyses of long range flights, where birds are travelling at high velocities over long time periods. Such data have been used to study wind patterns, and areas of avian feeding and foraging have also been used to study oceanic fronts. Here we focus on "slow moving" periods (which we associate to when birds appear to be drifting on the sea surface), in order to investigate bird drift as a proxy for sea surface currents in the western Mediterranean Sea. We analyse trajectories corresponding to "slow moving" periods recorded by GPSs attached to individuals of the species Calonectris diomedea ( Scopoli's shearwater) from mid August to mid September 2012. The trajectories are compared with sea level anomaly (SLA), sea surface temperature (SST), Finite Size Lyapunov Exponents (FSLE), wind fields, and the outputs from an automated sea-surface-height based eddy tracker. The SLA and SST datasets were obtained from the Copernicus Marine Environment Monitoring Service (CMEMS) with a spatial resolution of 1/8 ̊ and 1/100 ̊ respectively while the FSLEs were computed from the SLA dataset. Finally, the wind data comes from the outputs of the CCMPv2 numerical model. This model has a global coverage with a spatial resolution of 1/4 ̊. Interesting relationships between the trajectories and SLA fields are found. According to the angle between the SLA gradient and the trajectories of birds, we classify drifts into three scenarios: perpendicular, parallel and other, which are associated with different driving forces. The first scenario implies that bird drift is driven by geostrophic sea surface currents. The second we associate with wind drag as the main driving force. This is validated through the wind dataset. Moreover, from the SST, FSLEs and the eddy tracker, we obtain supplementary information on the presence of oceanic structures (such as eddies or fronts), not observed in the SLA field due to its limited spatial and temporal resolutions. Therefore, this data helps to explain some of the third case scenario trajectories.

Base metal thermocouples drift rate dependence from thermoelement diameter

NASA Astrophysics Data System (ADS)

Pavlasek, P.; Duris, S.; Palencar, R.

2015-02-01

Temperature measurements are one of the key factors in many industrial applications that directly affect the quality, effectiveness and safety of manufacturing processes. In many industrial applications these temperature measurements are realized by thermocouples. Accuracy of thermocouples directly affects the quality of the final product of manufacturing and their durability determines the safety margins required. One of the significant effects that affect the precision of the thermocouples is short and long term stability of their voltage output. This stability issue occurs in every type of thermocouples and is caused by multiple factors. In general these factors affect the Seebeck coefficient which is a material constant, which determines the level of generated voltage when exposed to a temperature gradient. Changes of this constant result in the change of the thermocouples voltage output thus indicated temperature which can result in production quality issues, safety and health hazards. These alternations can be caused by physical and chemical changes within the thermocouple lead material. Modification of this material constant can be of temporary nature or permanent. This paper concentrates on the permanent, or irreversible changes of the Seebeck coefficient that occur in commonly used swaged MIMS Type N thermocouples. These permanent changes can be seen as systematic change of the EMF of the thermocouple when it is exposed to a high temperature over a period of time. This change of EMF by time is commonly known as the drift of the thermocouple. This work deals with the time instability of thermocouples EMF at temperatures above 1200 °C. Instability of the output voltage was taken into relation with the lead diameter of the tested thermocouples. This paper concentrates in detail on the change of voltage output of thermocouples of different diameters which were tested at high temperatures for the overall period of more than 210 hours. The gather data from this testing was used to establish the relation between the level of EMF drift and the lead diameter of the thermocouple thermoelements. Furthermore this data was also used to create a drift function which mathematically expresses the dependency between the drift rate and the diameter of the thermocouple leads.

Study of Turbulence and Radial Electric Field Transitions in ASDEX Upgrade using Doppler Reflectometry

NASA Astrophysics Data System (ADS)

Conway, Garrard

2006-10-01

The radial electric field is recognised as an important factor in the performance of magnetically confined fusion plasmas. On ASDEX Upgrade microwave Doppler reflectometry has been developed to directly measure Er profiles, its shear and its fluctuations. Here a poloidally tilted antenna selects via Bragg a specific turbulence wavenumber giving a frequency shift directly proportional to the perpendicular rotation velocity u= vE xB+ vturb of the turbulence moving in the plasma. Turbulence simulations show vE xBvturb allowing simple extraction of Er with good accuracy. In the scrape-off-layer Er is positive, but reverses across the separatrix due to the pedestal pressure gradient to form a negative well. The strength of the well scales directly with confinement, typically -50V/cm for ohmic/L-mode, rising to -300V/cm for H-mode and in excess of -500V/cm for improved H-modes. Without NBI vE xB vturb which allows the turbulence behaviour to be investigated. For example the core rotation reverses from ion to electron direction when plasma collisionality is raised while matched gyro-kinetic turbulence simulations show the dominant turbulence changing from TEM to ITG with corresponding vturb reversal, which implies the core Er reverses sign with the turbulence. Also of major importance to confinement are zonal flows and GAMs - radially localised oscillating E xB flows. Er fluctuations directly measured by Doppler refl. reveal coherent modes in the edge gradient region where turbulence vorticity and Er shear are largest. The mode frequency scales as sound speed over major radius but is sensitive to plasma shape and local q. So far GAMs have not been seen in H-modes, nor in the plasma core. In each topic, the synergetic combination of experiment, theory and numerical simulation aids interpretation shows Er is interlinked with turbulence and the mean plasma profiles. Collaborators: J.Schirmer, W.Suttrop, C.Angioni, R.Dux, F.Jenko, E.Holzhauer, S.Klenge, B.Kurzan, C.Maggi, A.G.Peeters, M.Reich, F.Ryter, B.Scott, C.Tr"oster, E.Wolfrum, H.Zohm and the ASDEX Upgrade Team.

Role of ionization and electron drift velocity profile to Rayleigh instability in a Hall thruster plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singh, Sukhmander; Malik, Hitendra K.

Role of ionization to Rayleigh instability is clarified in a Hall thruster plasma under the variety of profiles of electron drift velocity, namely, step-like profile (SLP) and two different super-Gaussian profiles (SGP1 and SGP2). For this, a relevant Rayleigh equation is derived and solved numerically using fourth-order Runge-Kutta method. Interestingly, an upper cutoff frequency of oscillations {omega}{sub max} is realized for the occurrence of the instability that shows dependence on the ionization rate {alpha}, electron drift velocity u{sub 0}, electron cyclotron frequency {Omega}, azimuthal wave number k{sub y}, plasma density n{sub 0}, density gradient {partial_derivative}n{sub 0}/{partial_derivative}x, ion (electron) thermal speedmore » V{sub thI}(V{sub thE}), and ion (electron) plasma frequency {omega}{sub pi}({omega}{sub pe}). The frequency {omega}{sub max} follows the trend {omega}{sub max} (for SGP2) >{omega}{sub max} (for SLP) >{omega}{sub max} (for SGP1) and shows a similar behaviour with ionization for all types of the velocity profiles. The instability is found to grow faster for the higher {alpha} and the ion temperature but it acquires lower rate under the effect of the higher electron temperature; the perturbed potential also varies in accordance with the growth rate. The electron temperature influences the growth rate and cutoff frequency less significantly in comparison with the ion temperature.« less

On the relationship between kinetic and fluid formalisms for convection in the inner magnetosphere

NASA Astrophysics Data System (ADS)

Song, Yang; Sazykin, Stanislav; Wolf, Richard A.

2008-08-01

In the inner magnetosphere, the plasma flows are mostly slow compared to thermal or Alfvén speeds, but the convection is far away from the ideal magnetohydrodynamic regime since the gradient/curvature drifts become significant. Both kinetic (Wolf, 1983) and two-fluid (Peymirat and Fontaine, 1994; Heinemann, 1999) formalisms have been used to describe plasma dynamics, but it is not fully understood how they relate to each other. We explore the relations among kinetic, fluid, and recently developed "average" (Liu, 2006) models in an attempt to find the simplest yet realistic way to describe the convection. First, we prove analytically that the model of (Liu, 2006), when closed with the assumption of a Maxwellian distribution, is equivalent to the fluid model of (Heinemann, 1999). Second, we analyze the transport of both one-dimensional and two-dimensional Gaussian-shaped blob of hot plasma. For the kinetic case, it is known that the time evolution of such a blob is gradual spreading in time. For the fluid case, Heinemann and Wolf (2001a, 2001b) showed that in a one-dimensional idealized case, the blob separates into two drifting at different speeds. We present a fully nonlinear solution of this case, confirming this behavior but demonstrating what appears to be a shocklike steepening of the faster drifting secondary blob. A new, more realistic two-dimensional example using the dipole geometry with a uniform electric field confirms the one-dimensional solutions. Implications for the numerical simulations of magnetospheric dynamics are discussed.

Mode Analyses of Gyrokinetic Simulations of Plasma Microturbulence

NASA Astrophysics Data System (ADS)

Hatch, David R.

This thesis presents analysis of the excitation and role of damped modes in gyrokinetic simulations of plasma microturbulence. In order to address this question, mode decompositions are used to analyze gyrokinetic simulation data. A mode decomposition can be constructed by projecting a nonlinearly evolved gyrokinetic distribution function onto a set of linear eigenmodes, or alternatively by constructing a proper orthogonal decomposition of the distribution function. POD decompositions are used to examine the role of damped modes in saturating ion temperature gradient driven turbulence. In order to identify the contribution of different modes to the energy sources and sinks, numerical diagnostics for a gyrokinetic energy quantity were developed for the GENE code. The use of these energy diagnostics in conjunction with POD mode decompositions demonstrates that ITG turbulence saturates largely through dissipation by damped modes at the same perpendicular spatial scales as those of the driving instabilities. This defines a picture of turbulent saturation that is very different from both traditional hydrodynamic scenarios and also many common theories for the saturation of plasma turbulence. POD mode decompositions are also used to examine the role of subdominant modes in causing magnetic stochasticity in electromagnetic gyrokinetic simulations. It is shown that the magnetic stochasticity, which appears to be ubiquitous in electromagnetic microturbulence, is caused largely by subdominant modes with tearing parity. The application of higher-order singular value decomposition (HOSVD) to the full distribution function from gyrokinetic simulations is presented. This is an effort to demonstrate the ability to characterize and extract insight from a very large, complex, and high-dimensional data-set - the 5-D (plus time) gyrokinetic distribution function.

Holocene re-colonisation, central-marginal distribution and habitat specialisation shape population genetic patterns within an Atlantic European grass species.

PubMed

Harter, D E V; Jentsch, A; Durka, W

2015-05-01

Corynephorus canescens (L.) P.Beauv. is an outbreeding, short-lived and wind-dispersed grass species, highly specialised on scattered and disturbance-dependent habitats of open sandy sites. Its distribution ranges from the Iberian Peninsula over Atlantic regions of Western and Central Europe, but excludes the two other classical European glacial refuge regions on the Apennine and Balkan Peninsulas. To investigate genetic patterns of this uncommon combination of ecological and biogeographic species characteristics, we analysed AFLP variation among 49 populations throughout the European distribution range, expecting (i) patterns of SW European glacial refugia and post-glacial expansion to the NE; (ii) decreasing genetic diversity from central to marginal populations; and (iii) interacting effects of high gene flow and disturbance-driven genetic drift. Decreasing genetic diversity from SW to NE and distinct gene pool clustering imply refugia on the Iberian Peninsula and in western France, from where range expansion originated towards the NE. High genetic diversity within and moderate genetic differentiation among populations, and a significant pattern of isolation-by-distance indicate a gene flow drift equilibrium within C. canescens, probably due to its restriction to scattered and dynamic habitats and limited dispersal distances. These features, as well as the re-colonisation history, were found to affect genetic diversity gradients from central to marginal populations. Our study emphasises the need for including the specific ecology into analyses of species (re-)colonisation histories and range centre-margin analyses. To account for discontinuous distributions, new indices of marginality were tested for their suitability in studies of centre-periphery gradients. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.

Effect of q-profile structure on intrinsic torque reversals

NASA Astrophysics Data System (ADS)

Lu, Zhixin

2014-10-01

Intrinsic toroidal rotation plays an important role in mitigating macroinstability and regulating turbulent transport in ITER, where neutral beams are not sufficient to provide the requisite torque. Recent experiments on C-Mod with LHCD observed rotation reversal related to a change in the q profile. In this work, we focus on understanding the physics of intrinsic rotation reversals in LHCD plasmas, using nonlinear, global gyro-kinetic simulations and analysis of mode structure and spectrum symmetry breaking. The sensitive dependence of turbulent residual stress on magnetic shear is identified and characterized. The basic residual stress is non-vanishing when the k-parallel spectrum symmetry is broken, e.g., by E × B shear induced radial shift, non-uniformity in turbulence intensity, etc.. It is found that at low magnetic shear, the poloidal harmonics can shift strongly in the radial direction, as a feature of non-local effects, due to radial propagation and amplitude variation of the mode. This new symmetry breaking mechanism leads to a change in the sign of spectrum averaged parallel wave vector and thus the direction of intrinsic torque. Theoretical study shows that the competition between magnetic drift and ion kinetic effects determines the non-local effects and the structure of the asymmetry. Specifically, it is found that the direction of the intrinsic torque changes from counter- to co-current in the core, when magnetic shear decreases through a critical value. A critical shear ŝR = 0 . 2 ~ 0 . 5 for reversal of CTEM-induced intrinsic torque found by simulation is consistent with that from the LHCD C-Mod reversal experiments. In addition, simulations indicate ŝR = 1 ~ 2 for the reversal of ITG-induced torque, a prediction which can be tested by experiments. This work is supported by CER and CMTFO, UCSD and U.S. DOE-PPPL Contract DE-AC02-09CH11466.

Trapping boundary and field-line motion during geomagnetic storms.

NASA Technical Reports Server (NTRS)

Kaufmann, R. L.; Horng, J.-T.; Konradi, A.

1972-01-01

Observation that the high-latitude trapping boundary for 20-keV electrons and 100-keV protons became very thin in the early morning hours during two intense substorms. The gradients were too steep to be maintained by drifting particles, so they must have been produced locally over the nightside of the earth. The flux gradient is seen to move at speeds in excess of 100 km/sec. Plasma appears to move away from the tail and around the earth at these high speeds during the sudden expansion phases of the substorms. The rapid plasma motion requires the presence of fluctuating electric fields that sometimes exceed 50 to 100 mV/m at a geomagnetic latitude of 30 deg on the L = 5 field line. These observations fit best into a model that contains two field-aligned sheet currents. The high electric fields that accompany the rapid plasma flow can produce nonadiabatic acceleration of 0.1- to 1-MeV electrons and protons.

Axial plasma detachment in helicon plasmas during a global transition due to spontaneous self organization: instabilities, bifurcation and the helicon core formation

NASA Astrophysics Data System (ADS)

Chakraborty Thakur, Saikat; Hong, Rongjie; Tynan, George

2017-10-01

We observe axial plasma detachment in a helicon plasma device that occurs simultaneously along with a spontaneous, self-organized global transition in the plasma dynamics via a transport bifurcation with strong hysteresis, at a certain B_crit. For B B_crit, the plasma exhibits steepened density and ion temperature gradients, strong shearing in the azimuthal and parallel velocities, and multiple, simultaneously present, radially separated plasma instabilities. The axial detachment also follows the same hysteresis curves associated with the transport bifurcation that led to the transition. The value of B_crit depends on the source parameters (pressure, gas flow rate, rf power etc.). This study allows access to new regimes to study plasma turbulence and transport as well as plasma detachment and helicon core formation. We find that the plasma can exist in more than one type of helicon modes.

Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa.

PubMed

Choudoir, Mallory J; Buckley, Daniel H

2018-06-07

The latitudinal diversity gradient is a pattern of biogeography observed broadly in plants and animals but largely undocumented in terrestrial microbial systems. Although patterns of microbial biogeography across broad taxonomic scales have been described in a range of contexts, the mechanisms that generate biogeographic patterns between closely related taxa remain incompletely characterized. Adaptive processes are a major driver of microbial biogeography, but there is less understanding of how microbial biogeography and diversification are shaped by dispersal limitation and drift. We recently described a latitudinal diversity gradient of species richness and intraspecific genetic diversity in Streptomyces by using a geographically explicit culture collection. Within this geographically explicit culture collection, we have identified Streptomyces sister-taxa whose geographic distribution is delimited by latitude. These sister-taxa differ in geographic distribution, genomic diversity, and ecological traits despite having nearly identical SSU rRNA gene sequences. Comparative genomic analysis reveals genomic differentiation of these sister-taxa consistent with restricted gene flow across latitude. Furthermore, we show phylogenetic conservatism of thermal traits between the sister-taxa suggesting that thermal trait adaptation limits dispersal and gene flow across climate regimes as defined by latitude. Such phylogenetic conservatism of thermal traits is commonly associated with latitudinal diversity gradients for plants and animals. These data provide further support for the hypothesis that the Streptomyces latitudinal diversity gradient was formed as a result of historical demographic processes defined by dispersal limitation and driven by paleoclimate dynamics.

Gradient-Type Magnetoelectric Current Sensor with Strong Multisource Noise Suppression.

PubMed

Zhang, Mingji; Or, Siu Wing

2018-02-14

A novel gradient-type magnetoelectric (ME) current sensor operating in magnetic field gradient (MFG) detection and conversion mode is developed based on a pair of ME composites that have a back-to-back capacitor configuration under a baseline separation and a magnetic biasing in an electrically-shielded and mechanically-enclosed housing. The physics behind the current sensing process is the product effect of the current-induced MFG effect associated with vortex magnetic fields of current-carrying cables (i.e., MFG detection) and the MFG-induced ME effect in the ME composite pair (i.e., MFG conversion). The sensor output voltage is directly obtained from the gradient ME voltage of the ME composite pair and is calibrated against cable current to give the current sensitivity. The current sensing performance of the sensor is evaluated, both theoretically and experimentally, under multisource noises of electric fields, magnetic fields, vibrations, and thermals. The sensor combines the merits of small nonlinearity in the current-induced MFG effect with those of high sensitivity and high common-mode noise rejection rate in the MFG-induced ME effect to achieve a high current sensitivity of 0.65-12.55 mV/A in the frequency range of 10 Hz-170 kHz, a small input-output nonlinearity of <500 ppm, a small thermal drift of <0.2%/℃ in the current range of 0-20 A, and a high common-mode noise rejection rate of 17-28 dB from multisource noises.

Gradient-Type Magnetoelectric Current Sensor with Strong Multisource Noise Suppression

PubMed Central

2018-01-01

A novel gradient-type magnetoelectric (ME) current sensor operating in magnetic field gradient (MFG) detection and conversion mode is developed based on a pair of ME composites that have a back-to-back capacitor configuration under a baseline separation and a magnetic biasing in an electrically-shielded and mechanically-enclosed housing. The physics behind the current sensing process is the product effect of the current-induced MFG effect associated with vortex magnetic fields of current-carrying cables (i.e., MFG detection) and the MFG-induced ME effect in the ME composite pair (i.e., MFG conversion). The sensor output voltage is directly obtained from the gradient ME voltage of the ME composite pair and is calibrated against cable current to give the current sensitivity. The current sensing performance of the sensor is evaluated, both theoretically and experimentally, under multisource noises of electric fields, magnetic fields, vibrations, and thermals. The sensor combines the merits of small nonlinearity in the current-induced MFG effect with those of high sensitivity and high common-mode noise rejection rate in the MFG-induced ME effect to achieve a high current sensitivity of 0.65–12.55 mV/A in the frequency range of 10 Hz–170 kHz, a small input-output nonlinearity of <500 ppm, a small thermal drift of <0.2%/℃ in the current range of 0–20 A, and a high common-mode noise rejection rate of 17–28 dB from multisource noises. PMID:29443920

Transport of microplastics in coastal seas

NASA Astrophysics Data System (ADS)

Zhang, Hua

2017-12-01

Microplastic pollution of the marine environment has received increasing attention from scientists, the public, and policy makers over the last few years. Marine microplastics predominantly originate near the coast and can remain in the nearshore zone for some time. However, at present, there is little understanding of the fate and transport of microplastics in coastal regions. This paper provides a comprehensive overview of the physical processes involved in the movement of microplastics from estuaries to the continental shelf. The trajectory and speed of microplastics are controlled by their physical characteristics (density, size, and shape) and ocean dynamic conditions (wind, waves, tides, thermohaline gradients, and the influence of benthic sediments). Microplastic particles can be subjected to beaching, surface drifting, vertical mixing, and biofouling, as well as bed-load and suspended load transport processes, until reaching terminal deposition on beaches, in coastal marshes, in benthic sediments or until they are carried by ocean currents to subtropical convergence zones. The dynamic interaction of released microplastics with the shoreline is regulated by onshore/offshore transport, which is impacted by the source location as well as the geometry, vegetation, tidal regime, and wave direction. Wind and wave conditions dominate surface drifting of buoyant particles through Ekman drift, windage, and Stokes drift mechanisms. Neustic microplastic particles travel in the subsurface because of vertical mixing through wind-driven Langmuir circulation and heat cycling. Increasing accumulation of microplastics in benthic sediments needs to be quantitatively explored in terms of biofouling, deposition, entrainment, and transport dynamics. Further studies are required to understand the following: 1) the primary parameters (e.g., windage, terminal velocity, diffusivity, critical shear stress) that determine microplastic transport in different pathways; 2) dynamic distribution of microplastics in various coastal landscapes (e.g., wetlands, beaches, estuaries, lagoons, barrier islands, depocenters) regulated by hydrodynamic conditions; and 3) interactions between the physical transport processes and biochemical reactions (degradation, flocculation, biofouling, ingestions).

Cleavage of a Gulf of Mexico Loop Current eddy by a deep water cyclone

NASA Astrophysics Data System (ADS)

Biggs, D. C.; Fargion, G. S.; Hamilton, P.; Leben, R. R.

1996-09-01

Eddy Triton, an anticyclonic eddy shed by the Loop Current in late June 1991, drifted SW across the central Gulf of Mexico in the first 6 months of 1992, along the ``southern'' of the three characteristic drift paths described by Vukovich and Crissman [1986] from their analyses of 13 years of advanced very high resolution radiometer sea surface temperature data. An expendable bathythermograph (XBT) and conductivity-temperature-depth (CTD) transect of opportunity through Triton at eddy age 7 months in January 1992 found that eddy interior stood 23 dyn. cm higher than periphery; this gradient drove an anticyclonic swirl transport of 9-10 Sv relative to 800 dbar. At eddy age 9-10 months and while this eddy was in deep water near 94°W, it interacted with a mesoscale cyclonic circulation and was cleaved into two parts. The major (greater dynamic centimeters) piece drifted NW to end up in the ``eddy graveyard'' in the NW corner of the gulf, while the minor piece drifted SW and reached the continental margin of the western gulf off Tuxpan. This southern piece of Eddy Triton then turned north to follow the 2000-m isobath to about 24°N and later coalesced with what remained of the major fragment. Because Eddy Triton's cleavage took place just before the start of marine mammals (GulfCet) and Louisiana-Texas physical oceanography (LATEX) field programs, the closely spaced CTD, XBT, and air dropped XBT (AXBT) data that were gathered on the continental margin north of 26°N in support of these programs allow a detailed look at the northern margin of the larger fragment of this eddy. Supporting data from the space-borne altimeters on ERS 1 and TOPEX/POSEIDON allow us to track both pieces of Eddy Triton in the western Gulf and follow their spin down in dynamic height, coalescence, and ultimate entrainment in January 1993 into another anticyclonic eddy (Eddy U).

Confinement-induced Molecular Templating and Controlled Ligation

NASA Astrophysics Data System (ADS)

Berard, Daniel; Shayegan, Marjan; Michaud, François; Henkin, Gil; Scott, Shane; Leith, Jason; Leslie, Sabrina; Leslie Lab Team

Loading and manipulating long DNA molecules within sub-50 nm cross-section nanostructures for genomic and biochemical analyses, while retaining their structural integrity, present key technological challenges to the biotechnology sector, such as device clogging and molecular breakage. We overcome these challenges by using Convex Lens-induced Confinement (CLiC) technology to gently load DNA into nanogrooves from above. Here, we demonstrate single-fluorophore visualization of custom DNA barcodes as well as efficient top-loading of DNA into sub-50 nm nanogrooves of variable topographies. We study confinement-enhanced self-ligation of polymers loaded in circular nanogrooves. Further, we use concentric, circular nanogrooves to eliminate confinement gradient-induced drift of stretched DNA.

Effects of magnetic islands on drift wave instability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jiang, P., E-mail: jiangp@pku.edu.cn; Department of Physics and Astronomy, University of California, Irvine, California 92697; Lin, Z., E-mail: zhihongl@uci.edu

2014-12-15

Magnetic islands have been implemented in the gyrokinetic toroidal code to study the effects of the islands on microturbulence. The pressure profile flattening is verified in the simulation with the islands. Simulations of ion temperature gradient instability find that different toroidal modes are linearly coupled together and that toroidal spectra become broader when the island width increases. The real frequencies and growth rates of different toroidal modes approach each other with the averaged value independent of the island width. The linear mode structures are enhanced at the island separatrices and weakened at the island centers, consistent with the flattening ofmore » the pressure profile inside the islands.« less

Energy Balance Bowen Ratio (EBBR) Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cook, D. R.

2016-01-01

The Energy Balance Bowen Ratio (EBBR) system produces 30-minute estimates of the vertical fluxes of sensible and latent heat at the local surface. Flux estimates are calculated from observations of net radiation, soil surface heat flux, and the vertical gradients of temperature and relative humidity (RH). Meteorological data collected by the EBBR are used to calculate bulk aerodynamic fluxes, which are used in the Bulk Aerodynamic Technique (BA) EBBR value-added product (VAP) to replace sunrise and sunset spikes in the flux data. A unique aspect of the system is the automatic exchange mechanism (AEM), which helps to reduce errors frommore » instrument offset drift.« less

Energy Balance Bowen Ratio Station (EBBR) Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cook, DR

2011-02-23

The energy balance Bowen ratio (EBBR) system produces 30-minute estimates of the vertical fluxes of sensible and latent heat at the local surface. Flux estimates are calculated from observations of net radiation, soil surface heat flux, and the vertical gradients of temperature and relative humidity (RH). Meteorological data collected by the EBBR are used to calculate bulk aerodynamic fluxes, which are used in the Bulk Aerodynamic Technique (BA) EBBR value-added product (VAP) to replace sunrise and sunset spikes in the flux data. A unique aspect of the system is the automatic exchange mechanism (AEM), which helps to reduce errors frommore » instrument offset drift.« less

Buoyancy of the ''Y2K'' Persistent Train and the Trajectory of the 04:00:29 UT Leonid Fireball

NASA Technical Reports Server (NTRS)

Jenniskens, Peter; Rairden, Rick L.; DeVincenzi, Donald L. (Technical Monitor)

2000-01-01

The atmospheric trajectory is calculated of a particularly well studied fireball and train during the 1999 Leonid Multi-Instrument Aircraft Campaign. Less than a minute after the meteor's first appearance, the train curves into a '2'-shape, which persisted until at least 13 minutes after the fireball. We conclude that the shape results because of horizontal winds from gravity waves with a scale height of 8.3 km at 79-91 km altitude, as well as a westerly wind gradient with altitude. In addition, there is downward drift that affects the formation of loops in the train early on.

Buoyancy of the "Y2K" Persistent Train and the Trajectory of the 04:00:29 UT Leonid Fireball

NASA Astrophysics Data System (ADS)

Jenniskens, Peter; Rairden, Rick L.

The atmospheric trajectory is calculated of a particularly well studied fireball and train during the 1999 Leonid Multi-Instrument Aircraft Campaign. Less than a minute after the meteor's first appearance, the train curves into a "2"-shape, which persisted until at least 13 minutes after the fireball. We conclude that the shape results because of horizontal winds from gravity waves with a scale height of 8.3 km at 79-91 km altitude, as well as a westerly wind gradient with altitude. In addition, there is downward drift that affects the formation of loops in the train early on.

Motion of charged particles normal to an irregular magnetic field. [astrophysical plasmas

NASA Technical Reports Server (NTRS)

Jokipii, J. R.

1975-01-01

The motion is analyzed of charged particles in a fluctuating magnetic field which varies only in directions normal to its mean direction, such as that which would be generated by an ensemble of magnetosonic waves propagating normal to an ambient magnetic field. The appropriate generalization of gradient-drift motion is derived in terms of the power spectrum of the magnetic fluctuations, and an effective spatial diffusion coefficient is obtained. Several special cases are considered, including a Gaussian power spectrum, a power-law spectrum with a cutoff, and a general power-law spectrum. A possible magnitude is calculated for the spatial diffusion coefficient of the solar wind.

Regulation of Ion Gradients across Myocardial Ischemic Border Zones: A Biophysical Modelling Analysis

PubMed Central

Niederer, Steven

2013-01-01

The myocardial ischemic border zone is associated with the initiation and sustenance of arrhythmias. The profile of ionic concentrations across the border zone play a significant role in determining cellular electrophysiology and conductivity, yet their spatial-temporal evolution and regulation are not well understood. To investigate the changes in ion concentrations that regulate cellular electrophysiology, a mathematical model of ion movement in the intra and extracellular space in the presence of ionic, potential and material property heterogeneities was developed. The model simulates the spatial and temporal evolution of concentrations of potassium, sodium, chloride, calcium, hydrogen and bicarbonate ions and carbon dioxide across an ischemic border zone. Ischemia was simulated by sodium-potassium pump inhibition, potassium channel activation and respiratory and metabolic acidosis. The model predicted significant disparities in the width of the border zone for each ionic species, with intracellular sodium and extracellular potassium having discordant gradients, facilitating multiple gradients in cellular properties across the border zone. Extracellular potassium was found to have the largest border zone and this was attributed to the voltage dependence of the potassium channels. The model also predicted the efflux of from the ischemic region due to electrogenic drift and diffusion within the intra and extracellular space, respectively, which contributed to depletion in the ischemic region. PMID:23577101

LAPD Studies on Kelvin-Helmholtz turbulence and Transport

NASA Astrophysics Data System (ADS)

Perez, Jean; Horton, Wendel; Carter, Troy; Gekelman, Walter; Bengtson, Roger; Gentle, Kenneth

2004-11-01

New results on the partial transport barrier and turbulence produced by a strong E×B jet of plasma shear flow are reported. By controlled biasing of the cathode-anode structure of the 20 m long, 1 m diameter Large Plasma Device at UCLA, a strongly localized shear flow is driven in the steady state. The fluctuations are shown to be well described by 2D electrostatic potential simulations of the Kelvin-Helmholtz instability in preprint IFSR-1002. Now, we exam the transport of particles and report the particle flux data for transport across the plasma jet. The mean ion saturation current shows that there is a steep density gradient on the core side of the jet with the foot of the density gradient near the shear layer . We consider the motion of test particles launched from the core side of the layer and calculate the probablity distribution of the first exit times. The density gradient of driven drift waves is also discussed. Experimentally, we propose to use optical tagging and laser induced fluorescence to follow particle trajectories across the shear layer in LAPD. Work supported by DOE grant DE-FG02-04ER54742. Experimental work was performed at the UCLA Basic Plasma Science Facility which is funded by NSF and DOE.

A cognitive behavioral group approach to enhance adherence to hemodialysis fluid restrictions: a randomized controlled trial.

PubMed

Sharp, John; Wild, Matt R; Gumley, Andrew I; Deighan, Christopher J

2005-06-01

Adhering to fluid restrictions represents one of the most difficult aspects of the hemodialysis treatment regimen. This report describes a randomized controlled trial of a group-based cognitive behavioral intervention aimed at improving fluid-restriction adherence in patients receiving hemodialysis. It was hypothesized that the intervention would improve adherence, measured by means of interdialytic weight gain (IWG), without impacting negatively on psychosocial functioning. Fifty-six participants receiving hemodialysis from 4 renal outpatient settings were randomly assigned to an immediate-treatment group (ITG; n = 29) or deferred-treatment group (DTG; n = 27). Participants were assessed at baseline, posttreatment, and follow-up stages. Treatment consisted of a 4-week intervention using educational, cognitive, and behavioral strategies to enhance effective self-management of fluid consumption. No significant difference in mean IWGs was found between the ITG and DTG during the acute-phase analysis (F(1,54) = 0.03; P > 0.05). However, in longitudinal analysis, there was a significant main effect for mean IWG (F(1.76,96.80) = 9.10; P < 0.001) and a significant difference between baseline and follow-up IWG values (t55 = 3.85; P < 0.001), reflecting improved adherence over time. No adverse effects of treatment were indicated through measures of psychosocial functioning. Some significant changes were evidenced in cognitions thought to be important in mediating behavioral change. The current study provides evidence for the feasibility and effectiveness of applying group-based cognitive behavior therapy to enhance adherence to hemodialysis fluid restrictions. Results are discussed in the context of the study's methodological limitations.

Quantitative proteomic analysis of bacterial enzymes released in cheese during ripening.

PubMed

Jardin, Julien; Mollé, Daniel; Piot, Michel; Lortal, Sylvie; Gagnaire, Valérie

2012-04-02

Due to increasingly available bacterial genomes in databases, proteomic tools have recently been used to screen proteins expressed by micro-organisms in food in order to better understand their metabolism in situ. While the main objective is the systematic identification of proteins, the next step will be to bridge the gap between identification and quantification of these proteins. For that purpose, a new mass spectrometry-based approach was applied, using isobaric tagging reagent for quantitative proteomic analysis (iTRAQ), which are amine specific and yield labelled peptides identical in mass. Experimental Swiss-type cheeses were manufactured from microfiltered milk using Streptococcus thermophilus ITG ST20 and Lactobacillus helveticus ITG LH1 as lactic acid starters. At three ripening times (7, 20 and 69 days), cheese aqueous phases were extracted and enriched in bacterial proteins by fractionation. Each sample, standardised in protein amount prior to proteomic analyses, was: i) analysed by 2D-electrophoresis for qualitative analysis and ii) submitted to trypsinolysis, and labelled with specific iTRAQ tag, one per ripening time. The three labelled samples were mixed together and analysed by nano-LC coupled on-line with ESI-QTOF mass spectrometer. Thirty proteins, both from bacterial or bovine origin, were identified and efficiently quantified. The free bacterial proteins detected were enzymes from the central carbon metabolism as well as stress proteins. Depending on the protein considered, the quantity of these proteins in the cheese aqueous extract increased from 2.5 to 20 fold in concentration from day 7 to day 69 of ripening. Copyright © 2012 Elsevier B.V. All rights reserved.

Spatial-temporal dynamics of neotropical velvet ant (Hymenoptera: Mutillidae) communities along a forest-savanna gradient.

PubMed

Alvarenga, Júlio Miguel; Vieira, Cecília Rodrigues; Godinho, Leandro Braga; Campelo, Pedro Henrique; Pitts, James Purser; Colli, Guarino Rinaldi

2017-01-01

Understanding how and why biological communities are organized over space and time is a major challenge and can aid biodiversity conservation in times of global changes. Herein, spatial-temporal variation in the structure of velvet ant communities was examined along a forest-savanna gradient in the Brazilian Cerrado to assess the roles of environmental filters and interspecific interactions upon community assembly. Velvet ants were sampled using 25 arrays of Y-shaped pitfall traps with drift fences for one year along an environmental gradient from cerrado sensu stricto (open canopy, warmer, drier) to cerradão (closed canopy, cooler, moister). Dataloggers installed on each trap recorded microclimate parameters throughout the study period. The effects of spatial distances, microclimate parameters and shared ancestry on species abundances and turnover were assessed with canonical correspondence analysis, generalized dissimilarity modelling and variance components analysis. Velvet ant diversity and abundance were higher in the cerrado sensu stricto and early in the wet season. There was pronounced compositional turnover along the environmental gradient, and temporal variation in richness and abundance was stronger than spatial variation. The dry season blooming of woody plant species fosters host abundance and, subsequently, velvet ant captures. Species were taxonomically clustered along the gradient with Sphaeropthalmina (especially Traumatomutilla spp.) and Pseudomethocina more associated, respectively, with cerrado sensu stricto and cerradão. This suggests a predominant role of environmental filters on community assemble, with physiological tolerances and host preferences being shared among members of the same lineages. Induced environmental changes in Cerrado can impact communities of wasps and their hosts with unpredictable consequences upon ecosystem functioning and services.

Spatial-temporal dynamics of neotropical velvet ant (Hymenoptera: Mutillidae) communities along a forest-savanna gradient

PubMed Central

Godinho, Leandro Braga; Campelo, Pedro Henrique; Pitts, James Purser; Colli, Guarino Rinaldi

2017-01-01

Understanding how and why biological communities are organized over space and time is a major challenge and can aid biodiversity conservation in times of global changes. Herein, spatial-temporal variation in the structure of velvet ant communities was examined along a forest-savanna gradient in the Brazilian Cerrado to assess the roles of environmental filters and interspecific interactions upon community assembly. Velvet ants were sampled using 25 arrays of Y-shaped pitfall traps with drift fences for one year along an environmental gradient from cerrado sensu stricto (open canopy, warmer, drier) to cerradão (closed canopy, cooler, moister). Dataloggers installed on each trap recorded microclimate parameters throughout the study period. The effects of spatial distances, microclimate parameters and shared ancestry on species abundances and turnover were assessed with canonical correspondence analysis, generalized dissimilarity modelling and variance components analysis. Velvet ant diversity and abundance were higher in the cerrado sensu stricto and early in the wet season. There was pronounced compositional turnover along the environmental gradient, and temporal variation in richness and abundance was stronger than spatial variation. The dry season blooming of woody plant species fosters host abundance and, subsequently, velvet ant captures. Species were taxonomically clustered along the gradient with Sphaeropthalmina (especially Traumatomutilla spp.) and Pseudomethocina more associated, respectively, with cerrado sensu stricto and cerradão. This suggests a predominant role of environmental filters on community assemble, with physiological tolerances and host preferences being shared among members of the same lineages. Induced environmental changes in Cerrado can impact communities of wasps and their hosts with unpredictable consequences upon ecosystem functioning and services. PMID:29077763

Refractive index-based detection of gradient elution liquid chromatography using chip-integrated microring resonator arrays.

PubMed

Wade, James H; Bailey, Ryan C

2014-01-07

Refractive index-based sensors offer attractive characteristics as nondestructive and universal detectors for liquid chromatographic separations, but a small dynamic range and sensitivity to minor thermal perturbations limit the utility of commercial RI detectors for many potential applications, especially those requiring the use of gradient elutions. As such, RI detectors find use almost exclusively in sample abundant, isocratic separations when interfaced with high-performance liquid chromatography. Silicon photonic microring resonators are refractive index-sensitive optical devices that feature good sensitivity and tremendous dynamic range. The large dynamic range of microring resonators allows the sensors to function across a wide spectrum of refractive indices, such as that encountered when moving from an aqueous to organic mobile phase during a gradient elution, a key analytical advantage not supported in commercial RI detectors. Microrings are easily configured into sensor arrays, and chip-integrated control microrings enable real-time corrections of thermal drift. Thermal controls allow for analyses at any temperature and, in the absence of rigorous temperature control, obviates extended detector equilibration wait times. Herein, proof of concept isocratic and gradient elution separations were performed using well-characterized model analytes (e.g., caffeine, ibuprofen) in both neat buffer and more complex sample matrices. These experiments demonstrate the ability of microring arrays to perform isocratic and gradient elutions under ambient conditions, avoiding two major limitations of commercial RI-based detectors and maintaining comparable bulk RI sensitivity. Further benefit may be realized in the future through selective surface functionalization to impart degrees of postcolumn (bio)molecular specificity at the detection phase of a separation. The chip-based and microscale nature of microring resonators also make it an attractive potential detection technology that could be integrated within lab-on-a-chip and microfluidic separation devices.

Evolution of Spiral and Scroll Waves of Excitation in a Mathematical Model of Ischaemic Border Zone

PubMed Central

Biktashev, Vadim N.; Biktasheva, Irina V.; Sarvazyan, Narine A.

2011-01-01

Abnormal electrical activity from the boundaries of ischemic cardiac tissue is recognized as one of the major causes in generation of ischemia-reperfusion arrhythmias. Here we present theoretical analysis of the waves of electrical activity that can rise on the boundary of cardiac cell network upon its recovery from ischaemia-like conditions. The main factors included in our analysis are macroscopic gradients of the cell-to-cell coupling and cell excitability and microscopic heterogeneity of individual cells. The interplay between these factors allows one to explain how spirals form, drift together with the moving boundary, get transiently pinned to local inhomogeneities, and finally penetrate into the bulk of the well-coupled tissue where they reach macroscopic scale. The asymptotic theory of the drift of spiral and scroll waves based on response functions provides explanation of the drifts involved in this mechanism, with the exception of effects due to the discreteness of cardiac tissue. In particular, this asymptotic theory allows an extrapolation of 2D events into 3D, which has shown that cells within the border zone can give rise to 3D analogues of spirals, the scroll waves. When and if such scroll waves escape into a better coupled tissue, they are likely to collapse due to the positive filament tension. However, our simulations have shown that such collapse of newly generated scrolls is not inevitable and that under certain conditions filament tension becomes negative, leading to scroll filaments to expand and multiply leading to a fibrillation-like state within small areas of cardiac tissue. PMID:21935402

Hydrogeology of a drift-filled bedrock valley near Lino Lakes, Anoka County, Minnesota

USGS Publications Warehouse

Winter, T.C.; Pfannkuch, H.O.

1976-01-01

The bedrock surface of east-central Minnesota is dissected by an intricate network of valleys. Outside the bedrock valley at site B, 3 mi (4. 8 km) from site A, 100 ft (30 m) of drift overlies the bedrock surface. Observation wells were installed at the two sites to determine the vertical ground-water movement between the various aquifer units and the lateral movement between the two sites. An aquifer test of the lowest valley-fill aquifer at site A showed that the observation well completed in the same aquifer as the pumping well responded immediately; whereas a lag of about 100 min occurred between the lower valley fill and uppermost body of sand and gravel. This indicates that the hydraulic connection between these two layers is poor at the immediate site. Test results show that the lower sand-and-gravel aquifer has a transmissivity between 14,000 and 27,000 ft2/d (1,300 and 2,500 m2/d). Although the hydraulic gradient is vertically downward in the valley, much of the drift fill is poorly permeable. This suggests that the quantity of downward-percolating water reaching the lowest valley-fill aquifer is relatively small at the test site. Because valley cut through a number of bedrock aquifers in the region, they could potentially be an important avenue of contamination from land-surface waste. In addition, the vast network of bedrock valleys in the Twin Cities area might cause contaminants to disseminate rather rapidly throughout a large area.

Short-Term Forecasting of Radiation Belt and Ring Current

NASA Technical Reports Server (NTRS)

Fok, Mei-Ching

2007-01-01

A computer program implements a mathematical model of the radiation-belt and ring-current plasmas resulting from interactions between the solar wind and the Earth s magnetic field, for the purpose of predicting fluxes of energetic electrons (10 keV to 5 MeV) and protons (10 keV to 1 MeV), which are hazardous to humans and spacecraft. Given solar-wind and interplanetary-magnetic-field data as inputs, the program solves the convection-diffusion equations of plasma distribution functions in the range of 2 to 10 Earth radii. Phenomena represented in the model include particle drifts resulting from the gradient and curvature of the magnetic field; electric fields associated with the rotation of the Earth, convection, and temporal variation of the magnetic field; and losses along particle-drift paths. The model can readily accommodate new magnetic- and electric-field submodels and new information regarding physical processes that drive the radiation-belt and ring-current plasmas. Despite the complexity of the model, the program can be run in real time on ordinary computers. At present, the program can calculate present electron and proton fluxes; after further development, it should be able to predict the fluxes 24 hours in advance

Observations of Multi-band Structures in Double Star TC-1 PEACE Electron and HIA Ion Data

NASA Astrophysics Data System (ADS)

Mohan Narasimhan, K.; Fazakerley, A. N.; Grimald, S.; Dandouras, I. S.; Mihaljcic, B.; Kistler, L. M.; Owen, C. J.

2015-12-01

Several authors have reported inner magnetosphere observations of proton distributions confined to narrow energy bands in the range 1 - 25 keV (Smith and Hoffman (1974), etc). These structures have been described as "nose structures", with reference to their appearance in energy-time spectrograms and are also known as "bands" if they occur for extended periods of time. Multi-nose structures have been observed if 2 or more noses appear at the same time (Vallat et al., 2007). Gaps between "noses" (or "bands") have been explained in terms of the competing corotation, convection and magnetic gradient drifts. Charge exchange losses in slow drift paths for steady state scenarios and the role of substorm injections have also been considered (Li et al., 2000; Ebihara et al., 2004). We analyse observations of electron and ion multi-band structures frequently seen in Double-Star TC1 PEACE and HIA data. We present results from statistical surveys conducted using data from the duration of the mission. Furthermore, using a combination of both statistics and simulations, we test previous theories as to possible formation mechanisms and explore other possible explanations.

On the Role of Global Magnetic Field Configuration in Affecting Ring Current Dynamics

NASA Technical Reports Server (NTRS)

Zheng, Y.; Zaharia, S. G.; Fok, M. H.

2010-01-01

Plasma and field interaction is one important aspect of inner magnetospheric physics. The magnetic field controls particle motion through gradient, curvature drifts and E cross B drift. In this presentation, we show how the global magnetic field affects dynamics of the ring current through simulations of two moderate geomagnetic storms (20 November 2007 and 8-9 March 2008). Preliminary results of coupling the Comprehensive Ring Current Model (CRCM) with a three-dimensional plasma force balance code (to achieve self-consistency in both E and B fields) indicate that inclusion of self-consistency in B tends to mitigate the intensification of the ring current as other similar coupling efforts have shown. In our approach, self-consistency in the electric field is already an existing capability of the CRCM. The magnetic self-consistency is achieved by computing the three-dimensional magnetic field in force balance with anisotropic ring current ion distributions. We discuss the coupling methodology and its further improvement. In addition, comparative studies by using various magnetic field models will be shown. Simulation results will be put into a global context by analyzing the morphology of the ring current, its anisotropy and characteristics ofthe interconnected region 2 field-aligned currents.

Laser induced fluorescence measurements of ion velocity and temperature of drift turbulence driven sheared plasma flow in a linear helicon plasma device

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chakraborty Thakur, S.; Fedorczak, N.; Manz, P.

2012-08-15

Using laser induced fluorescence (LIF), radial profiles of azimuthal ion fluid velocity and ion temperature are measured in the controlled shear de-correlation experiment (CSDX) linear helicon plasma device. Ion velocities and temperatures are derived from the measured Doppler broadened velocity distribution functions of argon ions. The LIF system employs a portable, high power (>300 mW), narrowband ({approx}1 MHz) tunable diode laser-based system operating at 668.614 nm. Previous studies in CSDX have shown the existence of a radially sheared azimuthal flow as measured with time delay estimation methods and Mach probes. Here, we report the first LIF measurements of sheared plasmamore » fluid flow in CSDX. Above a critical magnetic field, the ion fluid flow profile evolves from radially uniform to peaked on axis with a distinct reversed flow region at the boundary, indicating the development of a sheared azimuthal flow. Simultaneously, the ion temperature also evolves from a radially uniform profile to a profile with a gradient. Measurements in turbulent and coherent drift wave mode dominated plasmas are compared.« less

Impact of resonant magnetic perturbations on nonlinearly driven modes in drift-wave turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leconte, M.; Diamond, P. H.; CMTFO and CASS, UCSD, California 92093

2012-05-15

In this work, we study the effects of resonant magnetic perturbations (RMPs) on turbulence, flows, and confinement in the framework of resistive drift wave turbulence. We extend the Hasegawa-Wakatani model to include RMP fields. The effect of the RMPs is to induce a linear coupling between the zonal electric field and the zonal density gradient, which drives the system to a state of electron radial force balance for large ({delta}B{sub r}/B{sub 0}). Both the vorticity flux (Reynolds stress) and particle flux are modulated. We derive an extended predator prey model which couples zonal potential and density dynamics to the evolutionmore » of turbulence intensity. This model has both turbulence drive and RMP amplitude as control parameters and predicts a novel type of transport bifurcation in the presence of RMPs. We find states that are similar to the ZF-dominated state of the standard predator-prey model, but for which the power threshold is now a function of the RMP strength. For small RMP amplitude, the energy of zonal flows decreases and the turbulence energy increases with ({delta}B{sub r}/B{sub 0}), corresponding to a damping of zonal flows.« less

Comparison of 2D simulations of detached divertor plasmas with divertor Thomson measurements in the DIII-D tokamak

DOE PAGES

Rognlien, Thomas D.; McLean, Adam G.; Fenstermacher, Max E.; ...

2017-01-27

A modeling study is reported using new 2D data from DIII-D tokamak divertor plasmas and improved 2D transport model that includes large cross-field drifts for the numerically difficult H-mode regime. The data set, which spans a range of plasmas densities for both forward and reverse toroidal magnetic field (B t) over a range of plasma densities, is provided by divertor Thomson scattering (DTS). Measurements utilizing X-point sweeping give corresponding 2D profiles of electron temperature (T e) and density (n e) across both divertor legs for individual discharges. The calculations show the same features of in/out plasma asymmetries as measured inmore » the experiment, with the normal B t direction (ion ∇B drift toward the X-point) having higher n e and lower T e in the inner divertor leg than outer. Corresponding emission data for total radiated power shows a strong inner-divertor/outer-divertor asymmetry that is reproduced by the simulations. Furthermore, these 2D UEDGE transport simulations are enabled for steep-gradient H-mode conditions by newly implemented algorithms to control isolated grid-scale irregularities.« less

Active focus stabilization for upright selective plane illumination microscopy.

PubMed

Hedde, Per Niklas; Gratton, Enrico

2015-06-01

Due to its sectioning capability, large field of view, and minimal light exposure, selective plane illumination microscopy has become the preferred choice for 3D time lapse imaging. Single cells in a dish can be conveniently imaged using an upright/inverted configuration. However, for measurements on long time scales (hours to days), mechanical drift is a problem; especially for studies of mammalian cells that typically require heating to 37°C which causes a thermal gradient across the instrument. Since the light sheet diverges towards the edges of the field of view, such a drift leads to a decrease in axial resolution over time. Or, even worse, the specimen could move out of the imaging volume. Here, we present a simple, cost-effective way to stabilize the axial position using the microscope camera to track the sample position. Thereby, sample loss is prevented and an optimal axial resolution is maintained by keeping the sample at the position where the light sheet is at its thinnest. We demonstrate the virtue of our approach by measurements of the light sheet thickness and 3D time lapse imaging of a cell monolayer at physiological conditions.

Active focus stabilization for upright selective plane illumination microscopy

PubMed Central

Hedde, Per Niklas; Gratton, Enrico

2015-01-01

Due to its sectioning capability, large field of view, and minimal light exposure, selective plane illumination microscopy has become the preferred choice for 3D time lapse imaging. Single cells in a dish can be conveniently imaged using an upright/inverted configuration. However, for measurements on long time scales (hours to days), mechanical drift is a problem; especially for studies of mammalian cells that typically require heating to 37°C which causes a thermal gradient across the instrument. Since the light sheet diverges towards the edges of the field of view, such a drift leads to a decrease in axial resolution over time. Or, even worse, the specimen could move out of the imaging volume. Here, we present a simple, cost-effective way to stabilize the axial position using the microscope camera to track the sample position. Thereby, sample loss is prevented and an optimal axial resolution is maintained by keeping the sample at the position where the light sheet is at its thinnest. We demonstrate the virtue of our approach by measurements of the light sheet thickness and 3D time lapse imaging of a cell monolayer at physiological conditions. PMID:26072829

Chromospheric Evaporation and Decimetric Radio Emission in Solar Flares

NASA Technical Reports Server (NTRS)

Aschwanden, Markus J.; Benz, Arnold O.

1995-01-01

We have discovered decimetric signatures of the chromospheric evaporation process. Evidence for the radio detection of chromospheric evaporation is based on the radio-inferred values of (1) the electron density, (2) the propagation speed, and (3) the timing, which are found to be in good agreement with statistical values inferred from the blueshifted Ca xix soft X-ray line. The physical basis of our model is that free-free absorption of plasma emission is strongly modified by the steep density gradient and the large temperature increase in the upflowing flare plasma. The steplike density increase at the chromospheric evaporation front causes a local discontinuity in the plasma frequency, manifested as almost infinite drift rate in decimetric type III bursts. The large temperature increase of the upflowing plasma considerably reduces the local free-free opacity (due to the T-(exp -3/2) dependence) and thus enhances the brightness of radio bursts emitted at the local plasma frequency near the chromospheric evaporation front, while a high-frequency cutoff is expected in the high-density regions behind the front, which can be used to infer the velocity of the upflowing plasma. From model calculations we find strong evidence that decimetric bursts with a slowly drifting high-frequency cutoff are produced by fundamental plasma emission, contrary to the widespread belief that decimetric bursts are preferentially emitted at the harmonic plasma level. We analyzed 21 flare episodes from 1991-1993 for which broadband (100-3000 MHz) radio dynamic spectra from Phoenix, hard X-ray data from BATSE/CGRO, and soft X-ray data from GOES were available. We detected slowly drifting high-frequency cutoffs between 1.1 and 3.0 GHz, with drift rates of -41 +/- 32 MHz/s, extending over time intervals of 24 +/- 23 s. Developing a density model for type III-emitting flare loops based on the statistically observed drift rate of type III bursts by Alvarez & Haddock, we infer velocities of up to 360 km/s for the upflowing plasma, with an average of v(sub CE) = 236 +/- 130 km /s for episodes with 5-15 s duration. The mean electron density of the upflowing plasma is n(sub e) = 5.2(+/-3.1) x 10(exp 10) /cu cm when it is first detected in radio, at coronal altitudes of h(sub 0) = 9.2 +/- 2.3 Mm.

Modern gyrokinetic particle-in-cell simulation of fusion plasmas on top supercomputers

DOE PAGES

Wang, Bei; Ethier, Stephane; Tang, William; ...

2017-06-29

The Gyrokinetic Toroidal Code at Princeton (GTC-P) is a highly scalable and portable particle-in-cell (PIC) code. It solves the 5D Vlasov-Poisson equation featuring efficient utilization of modern parallel computer architectures at the petascale and beyond. Motivated by the goal of developing a modern code capable of dealing with the physics challenge of increasing problem size with sufficient resolution, new thread-level optimizations have been introduced as well as a key additional domain decomposition. GTC-P's multiple levels of parallelism, including inter-node 2D domain decomposition and particle decomposition, as well as intra-node shared memory partition and vectorization have enabled pushing the scalability ofmore » the PIC method to extreme computational scales. In this paper, we describe the methods developed to build a highly parallelized PIC code across a broad range of supercomputer designs. This particularly includes implementations on heterogeneous systems using NVIDIA GPU accelerators and Intel Xeon Phi (MIC) co-processors and performance comparisons with state-of-the-art homogeneous HPC systems such as Blue Gene/Q. New discovery science capabilities in the magnetic fusion energy application domain are enabled, including investigations of Ion-Temperature-Gradient (ITG) driven turbulence simulations with unprecedented spatial resolution and long temporal duration. Performance studies with realistic fusion experimental parameters are carried out on multiple supercomputing systems spanning a wide range of cache capacities, cache-sharing configurations, memory bandwidth, interconnects and network topologies. These performance comparisons using a realistic discovery-science-capable domain application code provide valuable insights on optimization techniques across one of the broadest sets of current high-end computing platforms worldwide.« less

Modern gyrokinetic particle-in-cell simulation of fusion plasmas on top supercomputers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Bei; Ethier, Stephane; Tang, William

The Gyrokinetic Toroidal Code at Princeton (GTC-P) is a highly scalable and portable particle-in-cell (PIC) code. It solves the 5D Vlasov-Poisson equation featuring efficient utilization of modern parallel computer architectures at the petascale and beyond. Motivated by the goal of developing a modern code capable of dealing with the physics challenge of increasing problem size with sufficient resolution, new thread-level optimizations have been introduced as well as a key additional domain decomposition. GTC-P's multiple levels of parallelism, including inter-node 2D domain decomposition and particle decomposition, as well as intra-node shared memory partition and vectorization have enabled pushing the scalability ofmore » the PIC method to extreme computational scales. In this paper, we describe the methods developed to build a highly parallelized PIC code across a broad range of supercomputer designs. This particularly includes implementations on heterogeneous systems using NVIDIA GPU accelerators and Intel Xeon Phi (MIC) co-processors and performance comparisons with state-of-the-art homogeneous HPC systems such as Blue Gene/Q. New discovery science capabilities in the magnetic fusion energy application domain are enabled, including investigations of Ion-Temperature-Gradient (ITG) driven turbulence simulations with unprecedented spatial resolution and long temporal duration. Performance studies with realistic fusion experimental parameters are carried out on multiple supercomputing systems spanning a wide range of cache capacities, cache-sharing configurations, memory bandwidth, interconnects and network topologies. These performance comparisons using a realistic discovery-science-capable domain application code provide valuable insights on optimization techniques across one of the broadest sets of current high-end computing platforms worldwide.« less

On Thermodiffusion and Gauge Transformations for Thermodynamic Fluxes and Driving Forces

NASA Astrophysics Data System (ADS)

Goldobin, D. S.

2017-12-01

We discuss the molecular diffusion transport in infinitely dilute liquid solutions under nonisothermal conditions. This discussion is motivated by an occurring misinterpretation of thermodynamic transport equations written in terms of chemical potential in the presence of temperature gradient. The transport equations contain the contributions owned by a gauge transformation related to the fact that chemical potential is determined up to the summand of form ( AT + B) with arbitrary constants A and B, where constant A is owned by the entropy invariance with respect to shifts by a constant value and B is owned by the potential energy invariance with respect to shifts by a constant value. The coefficients of the cross-effect terms in thermodynamic fluxes are contributed by this gauge transformation and, generally, are not the actual cross-effect physical transport coefficients. Our treatment is based on consideration of the entropy balance and suggests a promising hint for attempts of evaluation of the thermal diffusion constant from the first principles. We also discuss the impossibility of the "barodiffusion" for dilute solutions, understood in a sense of diffusion flux driven by the pressure gradient itself. When one speaks of "barodiffusion" terms in literature, these terms typically represent the drift in external potential force field (e.g., electric or gravitational fields), where in the final equations the specific force on molecules is substituted with an expression with the hydrostatic pressure gradient this external force field produces. Obviously, the interpretation of the latter as barodiffusion is fragile and may hinder the accounting for the diffusion fluxes produced by the pressure gradient itself.

Exploring the Effect of Media, Salinity and Clay on the Thermoelectric Coupling Coefficient in Self-Potential Data

NASA Astrophysics Data System (ADS)

Meyer, C. D.; Revil, A.

2014-12-01

Self-potential is a non-invasive, passive geophysical technique with applications ranging from imaging oil and gas reservoirs to identifying preferential flow paths in earthen embankments. Several cross-coupled flow phenomena contribute to self-potential data, and there is a need to further quantify these various sources to enable better resolution and quantification of self-potential models. Very little research has been done to constrain thermoelectric source mechanisms that contribute to self-potential signals. A laboratory experiment has been designed to investigate the thermoelectric coupling coefficient (CTE) that relates the voltage change per degree centigrade (V/°C) in porous media. This study focuses on a sand tank experiment using a saturated silica sand. To isolate the temperature gradient dependence of self-potential measurements, no hydraulic gradient is applied to the tank, eliminating the streaming potential component of source current. Self-potential and temperature data are recorded while reservoirs of hot and cold water are established on opposite ends of the tank in order to generate thermoelectric source currents. Various thermal gradients ranging from 0 °C to 80 °C over 20 cm are examined for various salinities (10-3M- 1M NaCl), sand grain sizes and clay content to investigate influences on CTE. A short-duration contact of non-polarizing (Pb/PbCl) electrodes is implemented to minimize temperature drift of electrodes during the experiment. Surface self-potential and temperature measurements are made in 30 minute intervals. Initial measurements have revealed non-linear effects, including a decreased CTE as temperature gradient bounds approach 0 °C.

Kinetic simulation of edge instability in fusion plasmas

NASA Astrophysics Data System (ADS)

Fulton, Daniel Patrick

In this work, gyrokinetic simulations in edge plasmas of both tokamaks and field reversed. configurations (FRC) have been carried out using the Gyrokinetic Toroidal Code (GTC) and A New Code (ANC) has been formulated for cross-separatrix FRC simulation. In the tokamak edge, turbulent transport in the pedestal of an H-mode DIII-D plasma is. studied via simulations of electrostatic driftwaves. Annulus geometry is used and simulations focus on two radial locations corresponding to the pedestal top with mild pressure gradient and steep pressure gradient. A reactive trapped electron instability with typical ballooning mode structure is excited in the pedestal top. At the steep gradient, the electrostatic instability exhibits unusual mode structure, peaking at poloidal angles theta=+- pi/2. Simulations find this unusual mode structure is due to steep pressure gradients in the pedestal but not due to the particular DIII-D magnetic geometry. Realistic DIII-D geometry has a stabilizing effect compared to a simple circular tokamak geometry. Driftwave instability in FRC is studied for the first time using gyrokinetic simulation. GTC. is upgraded to treat realistic equilibrium calculated by an MHD equilibrium code. Electrostatic local simulations in outer closed flux surfaces find ion-scale modes are stable due to the large ion gyroradius and that electron drift-interchange modes are excited by electron temperature gradient and bad magnetic curvature. In the scrape-off layer (SOL) ion-scale modes are excited by density gradient and bad curvature. Collisions have weak effects on instabilities both in the core and SOL. Simulation results are consistent with density fluctuation measurements in the C-2 experiment using Doppler backscattering (DBS). The critical density gradients measured by the DBS qualitatively agree with the linear instability threshold calculated by GTC simulations. One outstanding critical issue in the FRC is the interplay between turbulence in the FRC. core and SOL regions. While the magnetic flux coordinates used by GTC provide a number of computational advantages, they present unique challenges at the magnetic field separatrix. To address this limitation, a new code, capable of coupled core-SOL simulations, is formulated, implemented, and successfully verified.

Observation and modeling of energetic particles at synchronous orbit on July 29, 1977

NASA Technical Reports Server (NTRS)

Baker, D. N.; Higbie, P. R.; Fritz, T. A.; Wilken, B.; Stuedemann, W.; Kaye, S. M.; Kivelson, M. G.; Moore, T. E.; Masley, A. J.; Smith, P. H.

1982-01-01

In the 12 hours immediately after a worldwide storm sudden commencement at 0027 UT on July 29, there was a series of at least four magnetospheric substorms, the last and largest of which exhibited an expansion phase onset at approximately 1200 UT. Data from six spacecraft in three general local time groupings (0300, 0700, and 1300 LT) are examined, and vector magnetic field data and energetic electron and ion data from approximately 15 keV to more than 2MeV are employed. Four primary types of studies are carried out: (1) timing and morphology of energetic particle injections; (2) variation of particle phase space densities, using local magnetic field and particle flux data; (3) measurement of boundary motions, using high-energy ion gradient anisotropies; and (4) adiabatic modeling, which included injection, large-scale convection, corotation, and gradient drifts. For the 1200 UT substorms, it is concluded that there was a substantial flux dropout in a broad sector near local midnight because of a large-scale boundary motion, followed by a recovery to a predropout configuration.

Non-normal dynamics and positive feedback between motion and sensation boosts run-and-tumble navigation.

NASA Astrophysics Data System (ADS)

Long, Junjiajia; Zucker, Steven W.; Emonet, Thierry

The capability to navigate environmental gradients is of critical importance for survival. Countless organisms (microbes, human cells, worms, larvae, and insects) as well as human-made robots use a run-and-tumble strategy to do so. The classical drawback of this approach is that runs in the wrong direction are wasteful. We show analytically that organisms can overcome this fundamental limitation by exploiting the non-normal dynamics and intrinsic nonlinearities inherent to the positive feedback between motion and sensation. Most importantly, this nonlinear amplification is asymmetric, elongating runs in favorable directions and abbreviating others. The result is a ``ratchet-like'' gradient climbing behavior with drift speeds that can approach half the maximum run speed of the organism. By extending the theoretical study of run-and-tumble navigation into the non-mean-field, nonlinear, and non-normal domains, our results provide a new level of understanding about this basic strategy. We thank Yale HPC, NIGMS 1R01GM106189, and the Allen Distinguished Investigator Program through The Paul G. Allen Frontiers Group for support.

Efficient Multi-Dimensional Simulation of Quantum Confinement Effects in Advanced MOS Devices

NASA Technical Reports Server (NTRS)

Biegel, Bryan A.; Rafferty, Conor S.; Ancona, Mario G.; Yu, Zhi-Ping

2000-01-01

We investigate the density-gradient (DG) transport model for efficient multi-dimensional simulation of quantum confinement effects in advanced MOS devices. The formulation of the DG model is described as a quantum correction to the classical drift-diffusion model. Quantum confinement effects are shown to be significant in sub-100nm MOSFETs. In thin-oxide MOS capacitors, quantum effects may reduce gate capacitance by 25% or more. As a result, the inclusion or quantum effects in simulations dramatically improves the match between C-V simulations and measurements for oxide thickness down to 2 nm. Significant quantum corrections also occur in the I-V characteristics of short-channel (30 to 100 nm) n-MOSFETs, with current drive reduced by up to 70%. This effect is shown to result from reduced inversion charge due to quantum confinement of electrons in the channel. Also, subthreshold slope is degraded by 15 to 20 mV/decade with the inclusion of quantum effects via the density-gradient model, and short channel effects (in particular, drain-induced barrier lowering) are noticeably increased.

A note on the electrochemical nature of the thermoelectric power

NASA Astrophysics Data System (ADS)

Apertet, Y.; Ouerdane, H.; Goupil, C.; Lecoeur, Ph.

2016-04-01

While thermoelectric transport theory is well established and widely applied, it is not always clear in the literature whether the Seebeck coefficient, which is a measure of the strength of the mutual interaction between electric charge transport and heat transport, is to be related to the gradient of the system's chemical potential or to the gradient of its electrochemical potential. The present article aims to clarify the thermodynamic definition of the thermoelectric coupling. First, we recall how the Seebeck coefficient is experimentally determined. We then turn to the analysis of the relationship between the thermoelectric power and the relevant potentials in the thermoelectric system: As the definitions of the chemical and electrochemical potentials are clarified, we show that, with a proper consideration of each potential, one may derive the Seebeck coefficient of a non-degenerate semiconductor without the need to introduce a contact potential as seen sometimes in the literature. Furthermore, we demonstrate that the phenomenological expression of the electrical current resulting from thermoelectric effects may be directly obtained from the drift-diffusion equation.

Direct measurements of classical and enhanced gradient-aligned cross-field ion flows in a helicon plasma source using laser-induced fluorescence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siddiqui, M. Umair, E-mail: musiddiqui@mail.wvu.edu; Thompson, Derek S.; McIlvain, Julianne M.

2015-12-15

Direct laser induced fluorescence measurements are shown of cross-field ion flows normal to an absorbing boundary that is aligned parallel to the axial magnetic field in a helicon plasma. We show Langmuir and emissive probe measurements of local density and plasma potential in the same region, as well as floating probe spectra near the boundary. With these measurements, we investigate the influence of ion-neutral collisionality on radial ion transport by varying the ratio of the ion gyro-radius, ρ{sub i}, to the ion-neutral collision length, λ, over the range 0.34 ≤ ρ{sub i}λ{sup −1} ≤ 1.60. Classical drift-diffusion transport along density and potential gradients ismore » sufficient to describe flow profiles for most cases. For two parameter regimes (ρ{sub i}λ{sup −1} = 0.65 and 0.44), low-frequency electrostatic fluctuations (f < 10 kHz) and enhanced cross-field bulk ion flow to the boundary are observed.« less

A basic plasma test for gyrokinetics: GDC turbulence in LAPD

NASA Astrophysics Data System (ADS)

Pueschel, M. J.; Rossi, G.; Told, D.; Terry, P. W.; Jenko, F.; Carter, T. A.

2017-02-01

Providing an important step towards validating gyrokinetics under comparatively little-explored conditions, simulations of pressure-gradient-driven plasma turbulence in the Large Plasma Device (LAPD) are compared with experimental observations. The corresponding signatures confirm the existence of a novel regime of turbulence, based on the recently-discovered gradient-driven drift coupling (GDC) instability, which is thus confirmed as a candidate mechanism for turbulence in basic, space and astrophysical plasmas. Despite the limitations of flux-tube gyrokinetics for this scenario, when accounting for box size scaling by applying a scalar factor η =6, agreement between simulations and experiment improves to within a factor of two for key observables: compressional magnetic, density, and temperature fluctuations, both in amplitude and structure. Thus, a first, strong indication is presented that the GDC instability seen in gyrokinetics appears to operate in the experiment and that the essential instability physics is present in the numerical model. Overall, the gyrokinetic framework and its numerical implementation in the Gene code therefore perform well for LAPD plasmas very different from their brethren in fusion experiments.

Effects of in-plane magnetic field on the transport of 2D electron vortices in non-uniform plasmas

NASA Astrophysics Data System (ADS)

Angus, Justin; Richardson, Andrew; Schumer, Joseph; Pulsed Power Team

2015-11-01

The formation of electron vortices in current-carrying plasmas is observed in 2D particle-in-cell (PIC) simulations of the plasma-opening switch. In the presence of a background density gradient in Cartesian systems, vortices drift in the direction found by crossing the magnetic field with the background density gradient as a result of the Hall effect. However, most of the 2D simulations where electron vortices are seen and studied only allow for in-plane currents and thus only an out-of-plane magnetic field. Here we present results of numerical simulations of 2D, seeded electron vortices in an inhomogeneous background using the generalized 2D electron-magneto-hydrodynamic model that additionally allows for in-plane components of the magnetic field. By seeding vortices with a varying axial component of the velocity field, so that the vortex becomes a corkscrew, it is found that a pitch angle of around 20 degrees is sufficient to completely prevent the vortex from propagating due to the Hall effect for typical plasma parameters. This work is supported by the NRL Base Program.

Numerical Solution of the Extended Nernst-Planck Model.

PubMed

Samson; Marchand

1999-07-01

The main features of a numerical model aiming at predicting the drift of ions in an electrolytic solution upon a chemical potential gradient are presented. The mechanisms of ionic diffusion are described by solving the extended Nernst-Planck system of equations. The electrical coupling between the various ionic fluxes is accounted for by the Poisson equation. Furthermore, chemical activity effects are considered in the model. The whole system of nonlinear equations is solved using the finite-element method. Results yielded by the model for simple test cases are compared to those obtained using an analytical solution. Applications of the model to more complex problems are also presented and discussed. Copyright 1999 Academic Press.

Van Allen Probes observations of structured whistler mode activity and coincident electron Landau acceleration inside a remnant plasmaspheric plume

NASA Astrophysics Data System (ADS)

Woodroffe, J. R.; Jordanova, V. K.; Funsten, H. O.; Streltsov, A. V.; Bengtson, M. T.; Kletzing, C. A.; Wygant, J. R.; Thaller, S. A.; Breneman, A. W.

2017-03-01

We present observations from the Van Allen Probes spacecraft that identify a region of intense whistler mode activity within a large density enhancement outside of the plasmasphere. We speculate that this density enhancement is part of a remnant plasmaspheric plume, with the observed wave being driven by a weakly anisotropic electron injection that drifted into the plume and became nonlinearly unstable to whistler emission. Particle measurements indicate that a significant fraction of thermal (<100 eV) electrons within the plume were subject to Landau acceleration by these waves, an effect that is naturally explained by whistler emission within a gradient and high-density ducting inside a density enhancement.

Finite-β Split-weight Gyrokinetic Particle Simulation of Microinstabilities

NASA Astrophysics Data System (ADS)

Jenkins, Thomas G.; Lee, W. W.; Lewandowski, J. L. V.

2003-10-01

The finite-β split-weight gyrokinetic particle simulation scheme [1] has been implemented in two-dimensional slab geometry for the purpose of studying the effects of high temperature electrons on microinstabilities. Drift wave instabilities and ion temperature gradient modes are studied in both shearless slab and sheared slab geometries. The linear and nonlinear evolution of these modes, as well as the physics of microtearing, is compared with the results of Reynders [2] and Cummings [3]. [1] W. W. Lee, J. L. V. Lewandowski, T. S. Hahm, and Z. Lin, Phys. Plasmas 8, 4435 (2001). [2] J. V. W. Reynders, Ph.D. thesis, Princeton University (1992). [3] J. C. Cummings, Ph.D. thesis, Princeton University (1995).

A Guillemin type E pulse forming network as the driver for a pulsed, high density plasma source.

PubMed

Rathod, Priyavandna J; Anitha, V P; Sholapurwala, Z H; Saxena, Y C

2014-06-01

A Guillemin type E pulse forming network (PFN) has been designed, developed, and tested for its application in generating high density (~1 × 10(18) m(-3)) plasmas. In the present study, plasma thus generated is utilized to investigate the interaction of high power microwaves (HPMs) with plasma in an experimental architecture known as SYMPLE (System for Microwave PLasma Experiment). Plasma discharges of ~100 μs (max) duration are to be produced, by delivering energy of 5 kJ stored in a PFN to the plasma source, a washer gun. The output of the PFN, in terms of its rise time, flat top and amplitude, needs to be tailored, depending on the experimental requirements. An ignitron (NL8900) trigger generator (ITG) is developed in-house to control the PFN discharge through the gun. This ITG is also to be used in a circuit that synchronizes the HPM and plasma shots, to ensure that HPM-plasma interaction takes place during a temporal regime where appropriate parametric conditions are satisfied. Hence it is necessary to retain the jitter within ±2.5 μs. Further, requirement on plasma quiescence (~10%) necessitates maintaining the ripple within 5%. The developmental work of the PFN, keeping in view the above criteria and the test results, is presented in this paper. The parameters of the PFN have been analytically approximated and verified with PSPICE simulation. The test results presented include rise time ~5-8 μs, flat top variable in the range 20-100 μs, ripple within ~1.5%, and jitter within ±2.5 μs, producing quiescent (<10%) plasma discharge meeting the experimental requirements.

Testing of Selected Geopotential Models in Terms of GOCE Satellite Orbit Determination Using Simulated GPS Observations

NASA Astrophysics Data System (ADS)

Bobojc, Andrzej; Drozyner, Andrzej

2016-04-01

This work contains a comparative study of performance of twenty geopotential models in an orbit estimation process of the satellite of the Gravity Field and Steady-State Ocean Circulation Explorer (GOCE) mission. For testing, among others, such models as JYY_GOCE02S, ITG-GOCE02, ULUX_CHAMP2013S, GOGRA02S, ITG-GRACE2010S, EIGEN-51C, EGM2008, EGM96, JGM3, OSU91a, OSU86F were adopted. A special software package, called the Orbital Computation System (OCS), based on the classical method of least squares was used. In the frame of OCS, initial satellite state vector components are corrected in an iterative process, using the given geopotential model and the models describing the remaining gravitational perturbations. An important part of the OCS package is the 8th order Cowell numerical integration procedure, which enables a satellite orbit computation. Different sets of pseudorange simulations along reference GOCE satellite orbital arcs were obtained using real orbits of the Global Positioning System (GPS) satellites. These sets were the basic observation data used in the adjustment. The centimeter-accuracy Precise Science Orbit (PSO) for the GOCE satellite provided by the European Space Agency (ESA) was adopted as the GOCE reference orbit. Comparing various variants of the orbital solutions, the relative accuracy of geopotential models in an orbital aspect is determined. Full geopotential models were used in the adjustment process. However, the solutions were also determined taking into account truncated geopotential models. In such case, an accuracy of the orbit estimated was slightly enhanced. The obtained solutions refer to the orbital arcs with the lengths of 90-minute and 1-day.

Periodontal Pathogens Invade Gingiva and Aortic Adventitia and Elicit Inflammasome Activation in αvβ6 Integrin-Deficient Mice

PubMed Central

Velsko, Irina M.; Chukkapalli, Sasanka S.; Rivera-Kweh, Mercedes F.; Zheng, Donghang; Aukhil, Ikramuddin; Lucas, Alexandra R.; Larjava, Hannu

2015-01-01

The American Heart Association supports an association between periodontal diseases and atherosclerosis but not a causal association. This study explores the use of the integrin β6−/− mouse model to study the causality. We investigated the ability of a polymicrobial consortium of Porphyromonas gingivalis, Treponema denticola, Tannerella forsythia, and Fusobacterium nucleatum to colonize the periodontium and induce local and systemic inflammatory responses. Polymicrobially infected Itgβ6−/− mice demonstrate greater susceptibility to gingival colonization/infection, with severe gingival inflammation, apical migration of the junctional epithelium, periodontal pocket formation, alveolar bone resorption, osteoclast activation, bacterial invasion of the gingiva, a greater propensity for the bacteria to disseminate hematogenously, and a strong splenic T cell cytokine response. Levels of atherosclerosis risk factors, including serum nitric oxide, oxidized low-density lipoprotein, serum amyloid A, and lipid peroxidation, were significantly altered by polybacterial infection, demonstrating an enhanced potential for atherosclerotic plaque progression. Aortic gene expression revealed significant alterations in specific Toll-like receptor (TLR) and nucleotide-binding domain- and leucine-rich-repeat-containing receptor (NLR) pathway genes in response to periodontal bacterial infection. Histomorphometry of the aorta demonstrated larger atherosclerotic plaques in Itgβ6−/− mice than in wild-type (WT) mice but no significant difference in atherosclerotic plaque size between mice with polybacterial infection and mice with sham infection. Fluorescence in situ hybridization demonstrated active invasion of the aortic adventitial layer by P. gingivalis. Our observations suggest that polybacterial infection elicits distinct aortic TLR and inflammasome signaling and significantly increases local aortic oxidative stress. These results are the first to demonstrate the mechanism of the host aortic inflammatory response induced by polymicrobial infection with well-characterized periodontal pathogens. PMID:26371120

Simulation of Mach Probes in Non-Uniform Magnetized Plasmas: the Influence of a Background Density Gradient

NASA Astrophysics Data System (ADS)

Haakonsen, Christian Bernt; Hutchinson, Ian H.

2013-10-01

Mach probes can be used to measure transverse flow in magnetized plasmas, but what they actually measure in strongly non-uniform plasmas has not been definitively established. A fluid treatment in previous work has suggested that the diamagnetic drifts associated with background density and temperature gradients affect transverse flow measurements, but detailed computational study is required to validate and elaborate on those results; it is really a kinetic problem, since the probe deforms and introduces voids in the ion and electron distribution functions. A new code, the Plasma-Object Simulator with Iterated Trajectories (POSIT) has been developed to self-consistently compute the steady-state six-dimensional ion and electron distribution functions in the perturbed plasma. Particle trajectories are integrated backwards in time to the domain boundary, where arbitrary background distribution functions can be specified. This allows POSIT to compute the ion and electron density at each node of its unstructured mesh, update the potential based on those densities, and then iterate until convergence. POSIT is used to study the impact of a background density gradient on transverse Mach probe measurements, and the results compared to the previous fluid theory. C.B. Haakonsen was supported in part by NSF/DOE Grant No. DE-FG02-06ER54512, and in part by an SCGF award administered by ORISE under DOE Contract No. DE-AC05-06OR23100.

Vertical distribution of hydraulic characteristics and water quality in three boreholes in the Galena-Platteville Aquifer at the Parson's Casket Hardware Superfund site, Belvidere, Illinois, 1990

USGS Publications Warehouse

Mills, P.C.

1993-01-01

The U.S. Geological Survey investigated contaminant migration in the Galena-Platteville aquifer at the Parson's Casket Hardware site in Belvidere, Ill. This report presents the results of the first phase of the investigation, from August through December 1990. A packer assembly was used to isolate various depth intervals in three 150-foot-deep boreholes in the dolomite aquifer. Aquifer-test data include vertical distributions of vertical hydraulic gradient, horizontal hydraulic conductivity (K), and response of water levels in observation wells to borehole pumping. Water-quality data include vertical distributions of field-measured properties and laboratory determinations of concentrations of volatile organic compounds (VOC's). vertical hydraulic gradients in the aquifer were downward. The downward gradients ranged from less than 0.01 to 0.37 foot/foot. The largest gradient was associated with an elevated-K interval at 115 to 125 feet below land surface. The hydraulic characteristics of strata within the aquifer seem to be generally consistent across the site. The strata can be subdivided into five hydraulic units with the following approximate depth ranges-and K's : (1) a 1- to 5-foot-thick weathered surface at about 35 feet below land surface, 1-200 ft/d (feet per day); (2) 35-80 feet, 0.05-0.5 ft/d; (3) 80-115 feet, 0.5 ft/d; (4) 115-125 feet, 0.5-10 ft/d; and (5) 125-150 feet, 0.5 ft/d. Water-level drawdowns were detected in one shallow bedrock observation well during pumping of some of the packed intervals in a nearby borehole, indicating that the degree of vertical connection between some intervals in the aquifer may be greater than that between others. During development pumping of one borehole, drawdowns were detected in a nearby well screened in the lower part of the overlying glacial-drift deposits, indicating hydraulic connection between the glacial drift aquifer and the bedrock aquifer. VOC's were detected throughout the upper half (about 150 feet ) of the bedrock aquifer beneath the site. The detected compounds were predominantly chlorinated ethenes and ethanes (maximum concentration was 570 ppb (parts per billion) of trichloroethylene. There was a positive correlation between concentrations of VOC's, specific conductance, and K. The distribution of VOC concentrations indicate that the low-K dolomite beds in the Galena-Platteville aquifer may impede the downward migration of the VOC's and that the high-K beds and fissures may provide pathways for the lateral migration of VOC's through the aquifer. Contaminant migration is possibly affected by ground-water flow through vertical fractures that connect shallow beds with deeper beds in the aquifer, thus explaining the detections of some VOC species at intermittent depths.

Instabilities and transport in Hall plasmas with ExB drift

NASA Astrophysics Data System (ADS)

Smolyakov, Andrei

2016-10-01

Low temperature plasma with moderate magnetic field, where the ions are not or just weakly magnetized, i.e. the ion Larmor radius being larger or comparable to the characteristic length scale of interest (e.g. the size ofthe system), have distinctly different properties from strongly magnetized plasmas such as that for fusion applications. Such parameters regimes are generally defined here as Hall plasmas. The natural scale separation between the ion and electron Larmor radii in Hall plasma, further exploited by the application of the external electric field, offers unique applications in various plasma devices for material processing and electric propulsion. Plasmas in such devices are in strongly non-equilibrium state making it prone to a number of instabilities. This talk presents physics description of the dominant unstable modes in ExB Hall plasmas resulting in highly turbulent state with nonlinear coherent structures and anomalous electron current. Since ions are un-magnetized, fundamental instabilities operating in low temperature Hall plasmas are very different from much studied gradients (density, temperature and magnetic field) driven drift-wave turbulence in strongly magnetized plasmas for fusion applications. As a result the nonlinear saturation mechanisms, role of the ExB shear flows are also markedly different in such plasmas. We review the basic instabilities in these plasmas which are related to the ion-sound, low-hybrid and anti-drift modes, discuss nonlinear saturation and anomalous transport mechanisms. The advanced nonlinear fluid model for such plasmas and results of nonlinear simulations of turbulence and anomalous transport performed within a modified BOUT++ framework will be presented. Research supported by NSERC Canada and US AFOSR FA9550-15-1-0226.

Thermal plasma and fast ion transport in electrostatic turbulence in the large plasma devicea)

NASA Astrophysics Data System (ADS)

Zhou, Shu; Heidbrink, W. W.; Boehmer, H.; McWilliams, R.; Carter, T. A.; Vincena, S.; Tripathi, S. K. P.; Van Compernolle, B.

2012-05-01

The transport of thermal plasma and fast ions in electrostatic microturbulence is studied. Strong density and potential fluctuations (δn /n˜δφ/kTe ˜ 0.5, f ˜ 5-50 kHz) are observed in the large plasma device (LAPD) [W. Gekelman, H. Pfister, Z. Lucky et al., Rev. Sci. Instrum. 62, 2875 (1991)] in density gradient regions produced by obstacles with slab or cylindrical geometry. Wave characteristics and the associated plasma transport are modified by driving sheared E × B drift through biasing the obstacle and by modification of the axial magnetic fields (Bz) and the plasma species. Cross-field plasma transport is suppressed with small bias and large Bz and is enhanced with large bias and small Bz. The transition in thermal plasma confinement is well explained by the cross-phase between density and potential fluctuations. Large gyroradius lithium fast ion beam (ρfast/ρs ˜ 10) orbits through the turbulent region. Scans with a collimated analyzer give detailed profiles of the fast ion spatial-temporal distribution. Fast-ion transport decreases rapidly with increasing fast-ion energy and gyroradius. Background waves with different scale lengths also alter the fast ion transport. Experimental results agree well with gyro-averaging theory. When the fast ion interacts with the wave for most of a wave period, a transition from super-diffusive to sub-diffusive transport is observed, as predicted by diffusion theory. Besides turbulent-wave-induced fast-ion transport, the static radial electric field (Er) from biasing the obstacle leads to drift of the fast-ion beam centroid. The drift and broadening of the beam due to static Er are evaluated both analytically and numerically. Simulation results indicate that the Er induced transport is predominately convective.

Nonrelativistic Perpendicular Shocks Modeling Young Supernova Remnants: Nonstationary Dynamics and Particle Acceleration at Forward and Reverse Shocks

NASA Astrophysics Data System (ADS)

Wieland, Volkmar; Pohl, Martin; Niemiec, Jacek; Rafighi, Iman; Nishikawa, Ken-Ichi

2016-03-01

For parameters that are applicable to the conditions at young supernova remnants, we present results of two-dimensional, three-vector (2D3V) particle-in-cell simulations of a non-relativistic plasma shock with a large-scale perpendicular magnetic field inclined at a 45^\\circ angle to the simulation plane to approximate three-dimensional (3D) physics. We developed an improved clean setup that uses the collision of two plasma slabs with different densities and velocities, leading to the development of two distinctive shocks and a contact discontinuity. The shock formation is mediated by Weibel-type filamentation instabilities that generate magnetic turbulence. Cyclic reformation is observed in both shocks with similar period, for which we note global variations due to shock rippling and local variations arising from turbulent current filaments. The shock rippling occurs on spatial and temporal scales produced by the gyro-motions of shock-reflected ions. The drift motion of electrons and ions is not a gradient drift, but is commensurate with {\\boldsymbol{E}}× {\\boldsymbol{B}} drift. We observe a stable supra-thermal tail in the ion spectra, but no electron acceleration because the amplitude of the Buneman modes in the shock foot is insufficient for trapping relativistic electrons. We see no evidence of turbulent reconnection. A comparison with other two-dimensional (2D) simulation results suggests that the plasma beta and the ion-to-electron mass ratio are not decisive for efficient electron acceleration, but the pre-acceleration efficacy might be reduced with respect to the 2D results once 3D effects are fully accounted for. Other microphysical factors may also play a part in limiting the amplitude of the Buneman waves or preventing the return of electrons to the foot region.

Decay of equatorial ring current ions and associated aeronomical consequences

NASA Technical Reports Server (NTRS)

Fok, M.-C.; Kozyra, J. U.; Nagy, A. F.; Rasmussen, C. E.; Khazanov, G. V.

1993-01-01

The decay of the major ion species which constitute the ring current is studied by solving the time evolution of their distribution functions during the recovery phase of a moderate geomagnetic storm. In this work, only equatorially mirroring particles are considered. Particles are assumed to move subject to E x B and gradient drifts. They also experience loses along their drift paths. Two loss mechanisms are considered: charge exchange with neutral hydrogen atoms and Coulomb collisions with thermal plasma in the plasmasphere. Thermal plasma densities are calculated with a plasmaspheric model employing a time-dependent convection electric field model. The drift-loss model successfully reproduces a number of important and observable features in the distribution function. Charge exchange is found to be the major loss mechanism for the ring current ions; however the important effects of Coulomb collisions on both the ring current and thermal populations are also presented. The model predicts the formation of a low-energy (less than 500 eV) ion population as a result of energy degradation caused by Coulomb collision of the ring current ions with the plasmaspheric electrons; this population may be one source of the low-energy ions observed during active and quiet periods in the inner magnetosphere. The energy transferred to plasmaspheric electrons through Coulomb collisions with ring current ions is believed to be the energy source for the electron temperature enhancement and the associated 6300 A (stable auroral red (SAR) arc) emission in the subauroral region. The calculated energy deposition rate is sufficient to produce a subauroral electron temperature enhancement and SAR arc emissions that are consistent with observations of these quantities during moderate magnetic activity levels.

Parametric Simulations of the Great Dark Spots of Neptune

NASA Astrophysics Data System (ADS)

Deng, Xiaolong; Le Beau, R.

2006-09-01

Observations by Voyager II and the Hubble Space Telescope of the Great Dark Spots (GDS) of Neptune suggest that large vortices with lifespans of years are not uncommon occurrences in the atmosphere of Neptune. The variability of these features over time, in particular the complex motions of GDS-89, make them challenging candidates to simulate in atmospheric models. Previously, using the Explicit Planetary Isentropic-Coordinate (EPIC) General Circulation Model, LeBeau and Dowling (1998) simulated the GDS-like vortex features. Qualitatively, the drift, oscillation, and tail-like features of GDS-89 were recreated, although precise numerical matches were only achieved for the meridional drift rate. In 2001, Stratman et al. applied EPIC to simulate the formation of bright companion clouds to the Great Dark Spots. In 2006, Dowling et al. presented a new version of EPIC, which includes hybrid vertical coordinate, cloud physics, advanced chemistry, and new turbulence models. With the new version of EPIC, more observation results, and more powerful computers, it is the time to revisit CFD simulations of the Neptune's atmosphere and do more detailed work on GDS-like vortices. In this presentation, we apply the new version of EPIC to simulate GDS-89. We test the influences of different parameters in the EPIC model: potential vorticity gradient, wind profile, initial latitude, vortex shape, and vertical structure. The observed motions, especially the latitudinal drift and oscillations in orientation angle and aspect ratio, are used as diagnostics of these unobserved atmospheric conditions. Increased computing power allows for more refined and longer simulations and greater coverage of the parameter space than previous efforts. Improved quantitative results have been achieved, including voritices with near eight-day oscillations and comparable variations in shape to GDS-89. This research has been supported by Kentucky NASA EPSCoR.

Force balance and deformation characteristics of anisotropic Arctic sea ice (a high resolution study)

NASA Astrophysics Data System (ADS)

Feltham, D. L.; Heorton, H. D.; Tsamados, M.

2016-12-01

The spatial distribution of Arctic sea ice arises from its deformation, driven by external momentum forcing, thermodynamic growth and melt. The deformation of Arctic sea ice is observed to have structural alignment on a broad range of length scales. By considering the alignment of diamond-shaped sea ice floes, an anisotropic rheology (known as the Elastic Anisotropic Plastic, EAP, rheology) has been developed for use in a climate sea ice model. Here we present investigations into the role of anisotropy in determining the internal ice stress gradient and the complete force balance of Arctic sea ice using a state-of-the-art climate sea ice model. Our investigations are focused on the link between external imposed dynamical forcing, predominantly the wind stress, and the emergent properties of sea ice, including its drift speed and thickness distribution. We analyse the characteristics of deformation events for different sea ice states and anisotropic alignment over different regions of the Arctic Ocean. We present the full seasonal stress balance and sea ice state over the Arctic ocean. We have performed 10 km basin-scale simulations over a 30-year time scale, and 2 km and 500 m resolution simulations in an idealised configuration. The anisotropic EAP sea ice rheology gives higher shear stresses than the more customary isotropic EVP rheology, and these reduce ice drift speed and mechanical thickening, particularly important in the Archipelago. In the central Arctic the circulation of sea ice is reduced allowing it to grow thicker thermodynamically. The emergent stress-strain rate correlations from the EAP model suggest that it is possible to characterise the internal ice stresses of Arctic sea ice from observable basin-wide deformation and drift patterns.

Flow and diffusion in channel-guided cell migration.

PubMed

Marel, Anna-Kristina; Zorn, Matthias; Klingner, Christoph; Wedlich-Söldner, Roland; Frey, Erwin; Rädler, Joachim O

2014-09-02

Collective migration of mechanically coupled cell layers is a notable feature of wound healing, embryonic development, and cancer progression. In confluent epithelial sheets, the dynamics have been found to be highly heterogeneous, exhibiting spontaneous formation of swirls, long-range correlations, and glass-like dynamic arrest as a function of cell density. In contrast, the flow-like properties of one-sided cell-sheet expansion in confining geometries are not well understood. Here, we studied the short- and long-term flow of Madin-Darby canine kidney (MDCK) cells as they moved through microchannels. Using single-cell tracking and particle image velocimetry (PIV), we found that a defined averaged stationary cell current emerged that exhibited a velocity gradient in the direction of migration and a plug-flow-like profile across the advancing sheet. The observed flow velocity can be decomposed into a constant term of directed cell migration and a diffusion-like contribution that increases with density gradient. The diffusive component is consistent with the cell-density profile and front propagation speed predicted by the Fisher-Kolmogorov equation. To connect diffusion-mediated transport to underlying cellular motility, we studied single-cell trajectories and occurrence of vorticity. We discovered that the directed large-scale cell flow altered fluctuations in cellular motion at short length scales: vorticity maps showed a reduced frequency of swirl formation in channel flow compared with resting sheets of equal cell density. Furthermore, under flow, single-cell trajectories showed persistent long-range, random-walk behavior superimposed on drift, whereas cells in resting tissue did not show significant displacements with respect to neighboring cells. Our work thus suggests that active cell migration manifests itself in an underlying, spatially uniform drift as well as in randomized bursts of short-range correlated motion that lead to a diffusion-mediated transport. Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

GPS Tides and Datums

DTIC Science & Technology

1994-07-01

REPORT DOCUMENTATION PAGE Form Ap~ovd -qmp Pu~~~~~~~~~~hc~~~~~ omef.A Nu0001U~ 0Itg O Mcq ~n, ’tmoa1a q 0 0 fft *cuqIO~ ’W𔃻i.q~ii os .ete .7qO0t.Aqea...water level heights. Using OTF technology it should be possible to obtain a time series of water surface heights to an accuracy of 1 to 2 ymfa...receiver location. 14. SUBJECT TERMS 15. NUMBER OF PAGES On-the-Fly, study of water levels , datum, Bay of Fundy 10 16. PRICE CODE 17. SECURITY

Rotationally driven 'zebra stripes' in Earth's inner radiation belt.

PubMed

Ukhorskiy, A Y; Sitnov, M I; Mitchell, D G; Takahashi, K; Lanzerotti, L J; Mauk, B H

2014-03-20

Structured features on top of nominally smooth distributions of radiation-belt particles at Earth have been previously associated with particle acceleration and transport mechanisms powered exclusively by enhanced solar-wind activity. Although planetary rotation is considered to be important for particle acceleration at Jupiter and Saturn, the electric field produced in the inner magnetosphere by Earth's rotation can change the velocity of trapped particles by only about 1-2 kilometres per second, so rotation has been thought inconsequential for radiation-belt electrons with velocities of about 100,000 kilometres per second. Here we report that the distributions of energetic electrons across the entire spatial extent of Earth's inner radiation belt are organized in regular, highly structured and unexpected 'zebra stripes', even when the solar-wind activity is low. Modelling reveals that the patterns are produced by Earth's rotation. Radiation-belt electrons are trapped in Earth's dipole-like magnetic field, where they undergo slow longitudinal drift motion around the planet because of the gradient and curvature of the magnetic field. Earth's rotation induces global diurnal variations of magnetic and electric fields that resonantly interact with electrons whose drift period is close to 24 hours, modifying electron fluxes over a broad energy range into regular patterns composed of multiple stripes extending over the entire span of the inner radiation belt.

Dynamics Explorer measurements of particles, fields, and plasma drifts over a horse-collar auroral pattern

NASA Technical Reports Server (NTRS)

Sharber, J. R.; Hones, E. W., Jr.; Heelis, R. A.; Craven, J. D.; Frank, L. A.; Maynard, N. C.; Slavin, J. A.; Birn, J.

1992-01-01

As shown from ground-based measurements and satellite-borne imagers, one type of global auroral pattern characteristic of quiet (usually northward IMF) intervals is that of a contracted but thickened emission region of a pattern referred to as 'horse-collar' aurora (Hones et al., 1989). In this report we use the Dynamics Explorer data set to examine a case in which this horse-collar pattern was observed by the DE-1 auroral imager, while at the same time DE-2, at lower altitude, measured precipitating particles, electric and magnetic fields, and plasma drifts. Our analysis shows that, in general, there is close agreement between the optical signatures and the particle precipitation patterns. In many instances, over scales ranging from tens to a few hundred kilometers, electron precipitation features and upward field-aligned currents are observed at locations where the plasma flow gradients indicate negative V-average x E. The particle, plasma, and field measurements made along the satellite track and the 2D perspective of the imager provide a means of determining the configuration of convective flows in the high-latitude ionosphere during this interval of northward IMF. Recent mapping studies are used to relate the low-altitude observations to possible magnetospheric source regions.

Kinetic feature of dipolarization fronts produced by interchange instability in the magnetotail

NASA Astrophysics Data System (ADS)

Lyu, Haoyu

2017-04-01

A two-dimensional extended MHD simulation is performed to study the kinetic feature of depolarization fronts (DF) in the scale of the ion inertial length / ion Larmor radius. The interchange instability, arising due to the force imbalance between the tailward gradient of thermal pressure and Earthward magnetic curvature force, self-consistently produces the DF in the near-Earth region. Numerical investigations indicate that the DF is a tangential discontinuity, which means that the normal plasma velocity across the DF should be zero in the reference system that is static with the DF structure. The electric system, including electric field and current, is determined by Hall effect arising in the scale of ion inertial length. Hall effect not only mainly contributes on the electric field normal to the tangent plane of the DF, increases the current along the tangent plane of the DF, but also makes the DF structure asymmetric. The drifting motion of the large-scale DF structure is determined by the FLR effect arising in the scale of ion Larmor radius. The ion magnetization velocity induced by the FLR effect is towards to duskward at the subsolar point of the DF, but the y component of velocity in the region after the DF, which dominantly results in the drifting motion of the whole mushroom structure towards the dawn.

Inner Core Rotation from Geomagnetic Westward Drift and a Stationary Spherical Vortex in Earth's Core

NASA Technical Reports Server (NTRS)

Voorhies, Coerte V.

1998-01-01

The idea that geomagnetic westward drift indicates convective leveling of the planetary momentum gradient within Earth's core is pursued in search of a differentially rotating mean state, upon which various oscillations and secular effects might be superimposed. The desired state conforms to roughly spherical boundary conditions, minimizes dissipative interference with convective cooling in the bulk of the core, yet may aid core cooling by depositing heat in the uppermost core and lower mantle. The variational calculus of stationary dissipation applied to a spherical vortex within the core yields an interesting differential rotation profile, akin to spherical Couette flow bounded by thin Hartmann layers. Four boundary conditions are required. To concentrate shear induced dissipation near the core-mantle boundary, these are taken to be: (i) no-slip at the core-mantle interface; (ii) geomagnetically estimated bulk westward flow at the base of the core-mantle boundary layer; (iii) no-slip at the inner-outer core interface; and, to describe magnetic locking of the inner core to the deep outer core; (iv) hydrodynamically stress-free at the inner-outer core boundary. By boldly assuming the axial core angular momentum anomaly to be zero, the super-rotation of the inner core relative to the mantle is calculated to be at most 1.5 deg./yr.

Inner Core Rotation from Geomagnetic Westward Drift and a Stationary Spherical Vortex in Earth's Core

NASA Technical Reports Server (NTRS)

Voorhies, C. V.

1999-01-01

The idea that geomagnetic westward drift indicates convective leveling of the planetary momentum gradient within Earth's core is pursued in search of a differentially rotating mean state, upon which various oscillations and secular effects might be superimposed. The desired state conforms to roughly spherical boundary conditions, minimizes dissipative interference with convective cooling in the bulk of the core, yet may aide core cooling by depositing heat in the uppermost core and lower mantle. The variational calculus of stationary dissipation applied to a spherical vortex within the core yields an interesting differential rotation profile akin to spherical Couette flow bounded by thin Hartmann layers. Four boundary conditions are required. To concentrate shear induced dissipation near the core-mantle boundary, these are taken to be: (i) no-slip at the core-mantle interface; (ii) geomagnetically estimated bulk westward flow at the base of the core-mantle boundary layer; (iii) no-slip at the inner-outer core interface; and, to describe magnetic locking of the inner core to the deep outer core, (iv) hydrodynamically stress-free at the inner-outer core boundary. By boldly assuming the axial core angular momentum anomaly to be zero, the super-rotation of the inner core is calculated to be at most 1.5 degrees per year.

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes.

PubMed

Logares, Ramiro; Tesson, Sylvie V M; Canbäck, Björn; Pontarp, Mikael; Hedlund, Katarina; Rengefors, Karin

2018-05-04

Whether or not communities of microbial eukaryotes are structured in the same way as bacteria is a general and poorly explored question in ecology. Here, we investigated this question in a set of planktonic lake microbiotas in Eastern Antarctica that represent a natural community ecology experiment. Most of the analysed lakes emerged from the sea during the last 6,000 years, giving rise to waterbodies that originally contained marine microbiotas and that subsequently evolved into habitats ranging from freshwater to hypersaline. We show that habitat diversification has promoted selection driven by the salinity gradient in bacterial communities (explaining ∼72% of taxa turnover), while microeukaryotic counterparts were predominantly structured by ecological drift (∼72% of the turnover). Nevertheless, we also detected a number of microeukaryotes with specific responses to salinity, indicating that albeit minor, selection has had a role in the structuring of specific members of their communities. In sum, we conclude that microeukaryotes and bacteria inhabiting the same communities can be structured predominantly by different processes. This should be considered in future studies aiming to understand the mechanisms that shape microbial assemblages. This article is protected by copyright. All rights reserved. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Application of an adaptive neuro-fuzzy inference system to ground subsidence hazard mapping

NASA Astrophysics Data System (ADS)

Park, Inhye; Choi, Jaewon; Jin Lee, Moung; Lee, Saro

2012-11-01

We constructed hazard maps of ground subsidence around abandoned underground coal mines (AUCMs) in Samcheok City, Korea, using an adaptive neuro-fuzzy inference system (ANFIS) and a geographical information system (GIS). To evaluate the factors related to ground subsidence, a spatial database was constructed from topographic, geologic, mine tunnel, land use, and ground subsidence maps. An attribute database was also constructed from field investigations and reports on existing ground subsidence areas at the study site. Five major factors causing ground subsidence were extracted: (1) depth of drift; (2) distance from drift; (3) slope gradient; (4) geology; and (5) land use. The adaptive ANFIS model with different types of membership functions (MFs) was then applied for ground subsidence hazard mapping in the study area. Two ground subsidence hazard maps were prepared using the different MFs. Finally, the resulting ground subsidence hazard maps were validated using the ground subsidence test data which were not used for training the ANFIS. The validation results showed 95.12% accuracy using the generalized bell-shaped MF model and 94.94% accuracy using the Sigmoidal2 MF model. These accuracy results show that an ANFIS can be an effective tool in ground subsidence hazard mapping. Analysis of ground subsidence with the ANFIS model suggests that quantitative analysis of ground subsidence near AUCMs is possible.

Elevation as a barrier: genetic structure for an Atlantic rain forest tree (Bathysa australis) in the Serra do Mar mountain range, SE Brazil.

PubMed

Reis, Talita Soares; Ciampi-Guillardi, Maísa; Bajay, Miklos Maximiliano; de Souza, Anete Pereira; Dos Santos, Flavio Antonio Maës

2015-05-01

Distance and discrete geographic barriers play a role in isolating populations, as seed and pollen dispersal become limited. Nearby populations without any geographic barrier between them may also suffer from ecological isolation driven by habitat heterogeneity, which may promote divergence by local adaptation and drift. Likewise, elevation gradients may influence the genetic structure and diversity of populations, particularly those marginally distributed. Bathysa australis (Rubiaceae) is a widespread tree along the elevation gradient of the Serra do Mar, SE Brazil. This self-compatible species is pollinated by bees and wasps and has autochoric seeds, suggesting restricted gene dispersal. We investigated the distribution of genetic diversity in six B. australis populations at two extreme sites along an elevation gradient: a lowland site (80-216 m) and an upland site (1010-1100 m.a.s.l.). Nine microsatellite loci were used to test for genetic structure and to verify differences in genetic diversity between sites. We found a marked genetic structure on a scale as small as 6 km (F ST = 0.21), and two distinct clusters were identified, each corresponding to a site. Although B. australis is continuously distributed along the elevation gradient, we have not observed a gene flow between the extreme populations. This might be related to B. australis biological features and creates a potential scenario for adaptation to the different conditions imposed by the elevation gradient. We failed to find an isolation-by-distance pattern; although on the fine scale, all populations showed spatial autocorrelation until ∼10-20 m. Elevation difference was a relevant factor though, but we need further sampling effort to check its correlation with genetic distance. The lowland populations had a higher allelic richness and showed higher rare allele counts than the upland ones. The upland site may be more selective, eliminating rare alleles, as we did not find any evidence for bottleneck.

Characterizing Intra-Urban Air Quality Gradients with a Spatially-Distributed Network

NASA Astrophysics Data System (ADS)

Zimmerman, N.; Ellis, A.; Schurman, M. I.; Gu, P.; Li, H.; Snell, L.; Gu, J.; Subramanian, R.; Robinson, A. L.; Apte, J.; Presto, A. A.

2016-12-01

City-wide air pollution measurements have typically relied on regulatory or research monitoring sites with low spatial density to assess population-scale exposure. However, air pollutant concentrations exhibit significant spatial variability depending on local sources and features of the built environment, which may not be well captured by the existing monitoring regime. To better understand urban spatial and temporal pollution gradients at 1 km resolution, a network of 12 real-time air quality monitoring stations was deployed beginning July 2016 in Pittsburgh, PA. The stations were deployed at sites along an urban-rural transect and in urban locations with a range of traffic, restaurant, and tall building densities to examine the impact of various modifiable factors. Measurements from the stationary monitoring stations were further supported by mobile monitoring, which provided higher spatial resolution pollutant measurements on nearby roadways and enabled routine calibration checks. The stationary monitoring measurements comprise ultrafine particle number (Aerosol Dynamics "MAGIC" CPC), PM2.5 (Met One Neighborhood PM Monitor), black carbon (Met One BC 1050), and a new low-cost air quality monitor, the Real-time Affordable Multi-Pollutant (RAMP) sensor package for measuring CO, NO2, SO2, O3, CO2, temperature and relative humidity. High time-resolution (sub-minute) measurements across the distributed monitoring network enable insight into dynamic pollutant behaviour. Our preliminary findings show that our instruments are sensitive to PM2.5 gradients exceeding 2 micro-grams per cubic meter and ultrafine particle gradients exceeding 1000 particles per cubic centimeter. Additionally, we have developed rigorous calibration protocols to characterize the RAMP sensor response and drift, as well as multiple linear regression models to convert sensor response into pollutant concentrations that are comparable to reference instrumentation.

Modelling the horizontal structure of mid-latitude E(s) from its refraction effects on F-region echoes

NASA Astrophysics Data System (ADS)

Barnes, R. I.

1991-02-01

The observation of the refraction of F-region echoes presently reported implies that significant horizontal structure exists within some E(s) clouds. A modeling of the data collected with the Bribie Island HF radar indicates that wind shear variations can account for examples in which irregularities either pass through, or pass with, existing layers of E(s) which create the cloudy, nonblanketing variety of E(s). The blanketing variety of E(s) seems to have little or no horizontal structure, and most likely drifts with the same velocity as the irregularities which produce nonblanketing E(s). Irregularities with strong horizontal gradients act as diverging lenses, leading to an overestimation of cloud size via simple occulting geometry.

Solar cycle variations of anomalous He-4 as deduced by studies of cosmic ray He-3

NASA Technical Reports Server (NTRS)

Cummings, A. C.; Mewaldt, R. A.; Stone, E. C.

1986-01-01

Voyager 1 and 2 observations have been used to derive the energy spectrum of 'anomalous' cosmic-ray (ACR) He using a technique based on the separation of the isotopes of He. Previously reported observations show that the ACR oxygen spectrum underwent a change in shape following the solar magnetic field reversal in 1980; in this paper evidence for a corresponding change in the ACR He spectrum is presented. It is found that the energy spectra of ACR He and oxygen and Galactic-cosmic-ray He-4 and He3 can be reproduced both before and after the field reversal using a simple solar modulation model in which the effects of curvature and gradient drifts are arbitrarily neglected.

Enhanced electron mixing and heating in 3-D asymmetric reconnection at the Earth's magnetopause

DOE PAGES

Le, Ari Yitzchak; Daughton, William Scott; Chen, Li -Jen; ...

2017-03-01

Here, electron heating and mixing during asymmetric reconnection are studied with a 3-D kinetic simulation that matches plasma parameters from Magnetospheric Multiscale (MMS) spacecraft observations of a magnetopause diffusion region. The mixing and heating are strongly enhanced across the magnetospheric separatrix compared to a 2-D simulation. The transport of particles across the separatrix in 3-D is attributed to lower hybrid drift turbulence excited at the steep density gradient near the magnetopause. In the 3-D simulation (and not the 2-D simulation), the electron temperature parallel to the magnetic field within the mixing layer is significantly higher than its upstream value inmore » agreement with the MMS observations.« less

Dissipation of ionospheric irregularities by wave-particle and collisional interactions

NASA Technical Reports Server (NTRS)

Bernhardt, P. A.; Pongratz, M. B.; Gray, S. P.; Thomsen, M. F.

1982-01-01

The nonlinear dissipation of plasma irregularities aligned parallel to an ambient magnetic field is studied numerically using a model which employs both wave-particle and collisional diffusion. A wave-particle diffusion coefficient derived from a local theory of the universal drift instability is used. This coefficient is effective in regions of nonzero plasma gradients and produces triangular-shaped irregularities with spectra which vary as f to the -4th, where f is the spatial frequency. Collisional diffusion acts rapidly on the vertices of the irregularities to reduce their amplitude. The simultaneous action of the two dissipative processes is more efficient than collisions acting alone. In this model, wave-particle diffusion mimics the forward cascade process of wave-wave coupling.

Superconducting tensor gravity gradiometer

NASA Technical Reports Server (NTRS)

Paik, H. J.

1981-01-01

The employment of superconductivity and other material properties at cryogenic temperatures to fabricate sensitive, low-drift, gravity gradiometer is described. The device yields a reduction of noise of four orders of magnitude over room temperature gradiometers, and direct summation and subtraction of signals from accelerometers in varying orientations are possible with superconducting circuitry. Additional circuits permit determination of the linear and angular acceleration vectors independent of the measurement of the gravity gradient tensor. A dewar flask capable of maintaining helium in a liquid state for a year's duration is under development by NASA, and a superconducting tensor gravity gradiometer for the NASA Geodynamics Program is intended for a LEO polar trajectory to measure the harmonic expansion coefficients of the earth's gravity field up to order 300.

Development of Pointing Device Using DC-Coupled Electrooculogram

NASA Astrophysics Data System (ADS)

Uchitomi, Hirotaka; Hori, Junichi

A purpose of this study is to support communication of developmentally disabled individuals with motor paralysis, such as Guillain-Barre Syndrome, brain-stem infarction, having difficulty in conveying their intention. In the present paper, a pointing device controlled by DC-coupled electrooculograms (EOGs) has been developed. The optic angle of the subject was estimated from the amplitude of vertical and horizontal EOGs for determining the two dimensional pointing position on the PC screen in real time. The eye blinking artifact was reduced using a median filter. The displacement of electrode position was compensated by considering the potential gradient. Moreover, the position error caused by drift phenomenon was adjusted by using head movement. The accuracy and operating speed of the proposed method were evaluated in human experiments.

A calibrated agent-based computer model of stochastic cell dynamics in normal human colon crypts useful for in silico experiments.

PubMed

Bravo, Rafael; Axelrod, David E

2013-11-18

Normal colon crypts consist of stem cells, proliferating cells, and differentiated cells. Abnormal rates of proliferation and differentiation can initiate colon cancer. We have measured the variation in the number of each of these cell types in multiple crypts in normal human biopsy specimens. This has provided the opportunity to produce a calibrated computational model that simulates cell dynamics in normal human crypts, and by changing model parameter values, to simulate the initiation and treatment of colon cancer. An agent-based model of stochastic cell dynamics in human colon crypts was developed in the multi-platform open-source application NetLogo. It was assumed that each cell's probability of proliferation and probability of death is determined by its position in two gradients along the crypt axis, a divide gradient and in a die gradient. A cell's type is not intrinsic, but rather is determined by its position in the divide gradient. Cell types are dynamic, plastic, and inter-convertible. Parameter values were determined for the shape of each of the gradients, and for a cell's response to the gradients. This was done by parameter sweeps that indicated the values that reproduced the measured number and variation of each cell type, and produced quasi-stationary stochastic dynamics. The behavior of the model was verified by its ability to reproduce the experimentally observed monocolonal conversion by neutral drift, the formation of adenomas resulting from mutations either at the top or bottom of the crypt, and by the robust ability of crypts to recover from perturbation by cytotoxic agents. One use of the virtual crypt model was demonstrated by evaluating different cancer chemotherapy and radiation scheduling protocols. A virtual crypt has been developed that simulates the quasi-stationary stochastic cell dynamics of normal human colon crypts. It is unique in that it has been calibrated with measurements of human biopsy specimens, and it can simulate the variation of cell types in addition to the average number of each cell type. The utility of the model was demonstrated with in silico experiments that evaluated cancer therapy protocols. The model is available for others to conduct additional experiments.

Comparative Study of Drift Compensation Methods for Environmental Gas Sensors

NASA Astrophysics Data System (ADS)

Abidin, M. Z.; Asmat, Arnis; Hamidon, M. N.

2018-02-01

Most drift compensation attempts in environmental gas sensors are only emphasize on the “already-known” drift-causing parameter (i.e., ambient temperature, relative humidity) in compensating the sensor drift. Less consideration is taken to another parameter (i.e., baseline responses) that might have affected indirectly with the promotion of drift-causing parameter variable (in this context, is ambient temperature variable). In this study, the “indirect” drift-causing parameter (drifted baseline responses) has been taken into consideration in compensating the sensor drift caused by ambient temperature variable, by means of a proposed drift compensation method (named as RT-method). The effectiveness of this method in its efficacy of compensating drift was analysed and compared with the common method that used the “already-known” drift-causing parameter (named as T-method), using drift reduction percentage. From the results analysis, the RT-method has outperformed T- method in the drift reduction percentage, with its ability to reduce drift up to 64% rather than the T-method which only able to reduce up to 45% for TGS2600 sensor. It has proven that the inclusion of drifted baseline responses into drift compensation attempt would resulted to an improved drift compensation efficiency.

Thermophoretic aggregation of particles in a protoplanetary disc

NASA Astrophysics Data System (ADS)

Smith, Francis J.

2018-04-01

Thermophoresis causes particles to move down a temperature gradient to a cooler region of a neutral gas. An example is the temperature gradient in the gas around a large cold object, such as an aggregate of particles, cooled by radiation in a protoplanetary disc. Particles near this aggregate move down the temperature gradient to the aggregate, equivalent to the particles being attracted to it by an inter-particle thermophoretic force. This force is proportional to the temperature difference between gas and aggregate, to the gas density and to the cross-section of the aggregate. The force can be large. For example, calculations based on the equations of motion of the interacting particles show that it can be large enough in an optically thin environment to increase the rate of aggregation by up to six orders of magnitude when an aggregate radius lies between 0.1 μm and 1 mm. From 1 mm to about 10 cm aggregates drift inwards through the gas too quickly for the thermophoretic attraction to increase aggregation significantly; so they grow slowly, causing an observed accumulation of particles at these sizes. Particles above 10 cm move more quickly, causing aggregation due to collisions, but also causing fragmentation. However, calculations show that fragmenting particles and bouncing particles in inelastic collisions often have low enough relative velocities that thermophoresis brings them together again. This allows particles to grow above 1 m, which is otherwise difficult to explain.

Edge of polar cap patches

NASA Astrophysics Data System (ADS)

Hosokawa, K.; Taguchi, S.; Ogawa, Y.

2016-04-01

On the night of 4 December 2013, a sequence of polar cap patches was captured by an all-sky airglow imager (ASI) in Longyearbyen, Norway (78.1°N, 15.5°E). The 630.0 nm airglow images from the ASI of 4 second exposure time, oversampled the emission of natural lifetime (with quenching) of at least ˜30 sec, introduce no observational blurring effects. By using such high-quality ASI images, we succeeded in visualizing an asymmetry in the gradients between the leading/trailing edges of the patches in a 2-D fashion. The gradient in the leading edge was found to be 2-3 times steeper than that in the trailing edge. We also identified fingerlike structures, appearing only along the trailing edge of the patches, whose horizontal scale size ranged from 55 to 210 km. These fingers are considered to be manifestations of plasma structuring through the gradient-drift instability (GDI), which is known to occur only along the trailing edge of patches. That is, the current 2-D observations visualized, for the first time, how GDI stirs the patch plasma and such a mixing process makes the trailing edge more gradual. This result strongly implies a close connection between the GDI-driven plasma stirring and the asymmetry in the large-scale shape of patches and then suggests that the fingerlike structures can be used as markers to estimate the fine-scale structure in the plasma flow within patches.

Observation of Trapped-Electron Mode Microturbulence in Improved Confinement Reversed-Field Pinch Plasmas

NASA Astrophysics Data System (ADS)

Duff, James R.

This is a dissertation for the completion of a Doctorate of Philosophy in Physics degree granted at the University of Wisconsin-Madison. Density fluctuations in the large-density-gradient region of improved confinement Madison Sym- metric Torus (MST) RFP plasmas exhibit multiple features that are characteristic of the trapped- electron mode (TEM). In fusion relevant plasmas, thermal transport is a key avenue of research in order to achieve a burning plasma. In the reversed field pinch (RFP) magnetic geometry, the dy- namics of conventional plasma discharges are primarily governed by magnetic stochasticity stem- ming from multiple long-wavelength tearing modes, that sustain the RFP discharge but have an adverse effect on the plasma confinement. Using inductive current profile control, these tearing modes are reduced, and global confinement is increased to that expected for comparable tokamak plasma. Under these conditions with certain plasma equilibria, new short-wavelength fluctuations distinct from global tearing modes appear in the spectrum at frequencies f 50 kHz that have normalized perpendicular wavenumbers k⊥rhos ≤ 0.2, and propagate in the electron diamagnetic drift direction. By adjusting the plasma current or the inductive suppression, there are observable variations in the spectral features. They exhibit a critical-gradient threshold, and the fluctuation amplitude increases with a local density gradient dependent parameter. These characteristics are consistent with the predictions of unstable TEMs based on gyrokinetic analysis using the GENE code. This thesis represents the first observation and description of TEM-like instabilities in the RFP geometry.

Increased electron temperature turbulence during suppression of edge localized mode by resonant magnetic perturbations in the DIII-D tokamak

NASA Astrophysics Data System (ADS)

Sung, C.; Wang, G.; Rhodes, T. L.; Smith, S. P.; Osborne, T. H.; Ono, M.; McKee, G. R.; Yan, Z.; Groebner, R. J.; Davis, E. M.; Zeng, L.; Peebles, W. A.; Evans, T. E.

2017-11-01

The first observation of increased electron temperature turbulence during edge localized mode (ELM) suppression by resonant magnetic perturbations (RMPs) is presented. These are long wavelength fluctuations (kθρs ≤ 0.2, where kθ = poloidal wavenumber and ρs = ion sound gyroradius) observed during H-mode plasmas on the DIII-D. This increase occurs only after ELMs are suppressed and are not observed during the initial RMP application. The T˜ e/Te increases ( >60%) are coincident with changes in normalized density and electron temperature gradients in the region from the top of the pedestal outward to the upper portion of the steep edge gradient. Density turbulence (kθρs ≤ 0.4) in this location was also observed to increase only after ELM suppression. These results are significant since they indicate that increased gradient-driven turbulent transport is one possible mechanism to regulate and maintain ELM-free H-mode operation. Investigation of linear stability of drift wave instabilities using the CGYRO code [Candy et al., J. Comput. Phys. 324, 73 (2016)] shows that the dominant mode moves closer to the electron mode branch from the ion mode branch only after ELMs are suppressed, correlated with the increased turbulence. The increased turbulence during ELM suppression, rather than with the initial RMP application, indicates that the often observed RMP induced "density pump-out" cannot be attributed to long wavelength edge turbulence level changes.

Chemical gradients in the Milky Way from the RAVE data. I. Dwarf stars

NASA Astrophysics Data System (ADS)

Boeche, C.; Siebert, A.; Piffl, T.; Just, A.; Steinmetz, M.; Sharma, S.; Kordopatis, G.; Gilmore, G.; Chiappini, C.; Williams, M.; Grebel, E. K.; Bland-Hawthorn, J.; Gibson, B. K.; Munari, U.; Siviero, A.; Bienaymé, O.; Navarro, J. F.; Parker, Q. A.; Reid, W.; Seabroke, G. M.; Watson, F. G.; Wyse, R. F. G.; Zwitter, T.

2013-11-01

Aims: We aim at measuring the chemical gradients of the elements Mg, Al, Si, and Fe along the Galactic radius to provide new constraints on the chemical evolution models of the Galaxy and Galaxy models such as the Besançon model. Thanks to the large number of stars of our RAVE sample we can study how the gradients vary as function of the distance from the Galactic plane. Methods: We analysed three different samples selected from three independent datasets: a sample of 19 962 dwarf stars selected from the RAVE database, a sample of 10 616 dwarf stars selected from the Geneva-Copenhagen Survey (GCS) dataset, and a mock sample (equivalent to the RAVE sample) created by using the GALAXIA code, which is based on the Besançon model. The three samples were analysed by using the very same method for comparison purposes. We integrated the Galactic orbits and obtained the guiding radii (Rg) and the maximum distances from the Galactic plane reached by the stars along their orbits (Zmax). We measured the chemical gradients as functions of Rg at different Zmax. Results: We found that the chemical gradients of the RAVE and GCS samples are negative and show consistent trends, although they are not equal: at Zmax< 0.4 kpc and 4.5

Multi-Dimensional Quantum Tunneling and Transport Using the Density-Gradient Model

NASA Technical Reports Server (NTRS)

Biegel, Bryan A.; Yu, Zhi-Ping; Ancona, Mario; Rafferty, Conor; Saini, Subhash (Technical Monitor)

1999-01-01

We show that quantum effects are likely to significantly degrade the performance of MOSFETs (metal oxide semiconductor field effect transistor) as these devices are scaled below 100 nm channel length and 2 nm oxide thickness over the next decade. A general and computationally efficient electronic device model including quantum effects would allow us to monitor and mitigate these effects. Full quantum models are too expensive in multi-dimensions. Using a general but efficient PDE solver called PROPHET, we implemented the density-gradient (DG) quantum correction to the industry-dominant classical drift-diffusion (DD) model. The DG model efficiently includes quantum carrier profile smoothing and tunneling in multi-dimensions and for any electronic device structure. We show that the DG model reduces DD model error from as much as 50% down to a few percent in comparison to thin oxide MOS capacitance measurements. We also show the first DG simulations of gate oxide tunneling and transverse current flow in ultra-scaled MOSFETs. The advantages of rapid model implementation using the PDE solver approach will be demonstrated, as well as the applicability of the DG model to any electronic device structure.

Fish population dynamics in a seasonally varying wetland

USGS Publications Warehouse

DeAngelis, Donald L.; Trexler, Joel C.; Cosner, Chris; Obaza, Adam; Jopp, Fred

2010-01-01

Small fishes in seasonally flooded environments such as the Everglades are capable of spreading into newly flooded areas and building up substantial biomass. Passive drift cannot account for the rapidity of observed population expansions. To test the reaction-diffusion mechanism for spread of the fish, we estimated their diffusion coefficient and applied a reaction-diffusion model. This mechanism was also too weak to account for the spatial dynamics. Two other hypotheses were tested through modeling. The first--the 'refuge mechanism--hypothesizes that small remnant populations of small fishes survive the dry season in small permanent bodies of water (refugia), sites where the water level is otherwise below the surface. The second mechanism, which we call the 'dynamic ideal free distribution mechanism' is that consumption by the fish creates a prey density gradient and that fish taxis along this gradient can lead to rapid population expansion in space. We examined the two alternatives and concluded that although refugia may play an important role in recolonization by the fish population during reflooding, only the second, taxis in the direction of the flooding front, seems capable of matching empirical observations. This study has important implications for management of wetlands, as fish biomass is an essential support of higher trophic levels.

Efficient Multi-Dimensional Simulation of Quantum Confinement Effects in Advanced MOS Devices

NASA Technical Reports Server (NTRS)

Biegel, Bryan A.; Ancona, Mario G.; Rafferty, Conor S.; Yu, Zhiping

2000-01-01

We investigate the density-gradient (DG) transport model for efficient multi-dimensional simulation of quantum confinement effects in advanced MOS devices. The formulation of the DG model is described as a quantum correction ot the classical drift-diffusion model. Quantum confinement effects are shown to be significant in sub-100nm MOSFETs. In thin-oxide MOS capacitors, quantum effects may reduce gate capacitance by 25% or more. As a result, the inclusion of quantum effects may reduce gate capacitance by 25% or more. As a result, the inclusion of quantum effects in simulations dramatically improves the match between C-V simulations and measurements for oxide thickness down to 2 nm. Significant quantum corrections also occur in the I-V characteristics of short-channel (30 to 100 nm) n-MOSFETs, with current drive reduced by up to 70%. This effect is shown to result from reduced inversion charge due to quantum confinement of electrons in the channel. Also, subthreshold slope is degraded by 15 to 20 mV/decade with the inclusion of quantum effects via the density-gradient model, and short channel effects (in particular, drain-induced barrier lowering) are noticeably increased.

The Occurrence of Small-scale Irregularities in the Mid-latitude Ionosphere from SuperDARN HF Radar Observations

NASA Astrophysics Data System (ADS)

Ruohoniemi, J. M.; Baker, J. B.; Maimaiti, M.; Oksavik, K.; Erickson, P. J.; Scales, W.; Eltrass, A.

2017-12-01

The mid-latitude radars of the SuperDARN network routinely observe backscatter from nighttime decameter-scale F region irregularities at latitudes well equatorward of the auroral boundary. This Sub-Auroral Ionospheric Scatter (SAIS) is strongly distinguished from auroral and SAPS backscatter by low Doppler velocities ( tens m/s) and stable, long-lived ( hours) occurrence in discrete events that are extended in both latitude and longitude. Statistical and event studies of SAIS with the SuperDARN radars indicate that the subauroral F region ionosphere is replete with irregularities during events, at least poleward of the 50° Λ horizon of the North American mid-latitude radars, and that radar observation of SAIS backscatter is then primarily limited by the magnetic aspect condition. Joint experiments with incoherent scatter radar have furnished sets of plasma measurements suitable for testing theories of plasma instability. Modeling work stimulated by the observations has explored the temperature-gradient instability (TGI) and the gradient drift instability (GDI) as possible sources of the irregularities. In this talk we review the findings on the occurrence of the SAIS category of mid-latitude F region irregularities, summarize the results of the modeling work, and discuss future research directions.

Phospholipid hydrolysis in a pharmaceutical emulsion assessed by physicochemical parameters and a new analytical method.

PubMed

Rabinovich-Guilatt, Laura; Dubernet, Catherine; Gaudin, Karen; Lambert, Gregory; Couvreur, Patrick; Chaminade, Pierre

2005-09-01

The aim of this work was to develop a simple high-performance liquid chromatography (HPLC) technique with evaporative light scattering detection (ELSD) for the separation and quantification of the major phospholipid (PL) and lysophospholipid (LPL) classes contained in a pharmaceutical phospholipid-based emulsion. In the established method, phosphatidylcholine (PC), phosphatidylethanolamine (PE), sphingomyeline (SM), lysophosphatidylcholine (LPC) and lysophosphatidylethanolamine (LPE) were separated with a PVA-Sil stationary phase and a binary gradient from pure chloroform to methanol:water (94:6 v/v) at 3.4%/min. The ELSD detection was enhanced using 0.1% triethylamine and formic acid in each gradient mobile phases. Factors such as stationary phase and ELSD drift tube temperature were optimized, concluding in optimal temperatures of 25 degrees C for separation and 50 degrees C for evaporation. This HPLC-ELSD method was then applied to a PL-emulsion exposed to autoclaving and accelerated thermal conditions at 50 degrees C. Hydrolysis of PC and PE followed first-order kinetics, representing only 45% of the total lipid mass after 3 months. The chemical stability was correlated to commonly measured formulation physical and physico-chemical parameters such as droplet size, emulsion pH and zeta-potential.

Reducing Pesticide Drift

EPA Pesticide Factsheets

Provides information about pesticide spray drift, including problems associated with drift, managing risks from drift and the voluntary Drift Reduction Technology program that seeks to reduce spray drift through improved spray equipment design.

Small-scale lacustrine drifts in Lake Champlain, Vermont

USGS Publications Warehouse

Manley, Patricia L.; Manley, T.O.; Hayo, Kathryn; Cronin, Thomas

2012-01-01

High resolution CHIRP (Compressed High Intensity Radar Pulse) seismic profiles reveal the presence of two lacustrine sediment drifts located in Lake Champlain's Juniper Deep. Both drifts are positive features composed of highly laminated sediments. Drift B sits on a basement high while Drift A is built on a trough-filling acoustically-transparent sediment unit inferred to be a mass-transport event. These drifts are oriented approximately north–south and are parallel to a steep ridge along the eastern shore of the basin. Drift A, located at the bottom of a structural trough, is classified as a confined, elongate drift that transitions northward to become a system of upslope asymmetric mudwaves. Drift B is perched atop a structural high to the west of Drift A and is classified as a detached elongate drift. Bottom current depositional control was investigated using Acoustic Doppler Current Profilers (ADCPs) located across Drift A. Sediment cores were taken at the crest and at the edges of the Drift A and were dated. Drift source, deposition, and evolution show that these drifts are formed by a water column shear with the highest deposition occurring along its crest and western flank and began developing circa 8700–8800 year BP.

6. West elevation of Drift Creek Bridge, view looking east ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

6. West elevation of Drift Creek Bridge, view looking east from new alignment of Drift Creek Road - Drift Creek Bridge, Spanning Drift Creek on Drift Creek County Road, Lincoln City, Lincoln County, OR

Rarefied-flow pitching moment coefficient measurements of the Shuttle Orbiter

NASA Technical Reports Server (NTRS)

Blanchard, R. C.; Hinson, E. W.

1988-01-01

An overview of the process for obtaining the Shuttle Orbiter rarefied-flow pitching moment from flight gyro data is presented. The extraction technique involves differentiation of the output of the pitch gyro after accounting for nonaerodynamic torques, such as those produced by gravity gradient and the Orbiter's auxiliary power unit and adjusting for drift biases. The overview of the extraction technique includes examples of results from each of the steps involved in the process, using the STS-32 mission as a typical sample case. The total pitching moment and moment coefficient (Cm) for that flight are calculated and compared with preflight predictions. The flight results show the anticipated decrease in Cm with increasing altitude. However, the total moment coefficient is less than predicted using preflight estimates.

Environmental preferences of tuna and non-tuna species associated with drifting fish aggregating devices (DFADs) in the Atlantic Ocean, ascertained through fishers' echo-sounder buoys

NASA Astrophysics Data System (ADS)

Lopez, Jon; Moreno, Gala; Lennert-Cody, Cleridy; Maunder, Mark; Sancristobal, Igor; Caballero, Ainhoa; Dagorn, Laurent

2017-06-01

Understanding the relationship between environmental variables and pelagic species concentrations and dynamics is helpful to improve fishery management, especially in a changing environment. Drifting fish aggregating device (DFAD)-associated tuna and non-tuna biomass data from the fishers' echo-sounder buoys operating in the Atlantic Ocean have been modelled as functions of oceanographic (Sea Surface Temperature, Chlorophyll-a, Salinity, Sea Level Anomaly, Thermocline depth and gradient, Geostrophic current, Total Current, Depth) and DFAD variables (DFAD speed, bearing and soak time) using Generalized Additive Mixed Models (GAMMs). Biological interaction (presence of non-tuna species at DFADs) was also included in the tuna model, and found to be significant at this time scale. All variables were included in the analyses but only some of them were highly significant, and variable significance differed among fish groups. In general, most of the fish biomass distribution was explained by the ocean productivity and DFAD-variables. Indeed, this study revealed different environmental preferences for tunas and non-tuna species and suggested the existence of active habitat selection. This improved assessment of environmental and DFAD effects on tuna and non-tuna catchability in the purse seine tuna fishery will contribute to transfer of better scientific advice to regional tuna commissions for the management and conservation of exploited resources.

Measurements of dynamo effect on double-CHI pulse ST plasmas on HIST

NASA Astrophysics Data System (ADS)

Ito, K.; Hanao, T.; Ishihara, M.; Matsumoto, K.; Higashi, T.; Kikuchi, Y.; Fukumoto, N.; Nagata, M.

2011-10-01

Coaxial Helicity injection (CHI) is an efficient current-drive method used in spheromak and spherical torus (ST) experiments. An anticipated issue for CHI is achieving good energy confinement, since it relies on the magnetic relaxation and dynamo. This is essentially because CHI cannot drive a dynamo directly inside a closed magnetic flux surface. Thus, it is an important issue to investigate dynamo effect to explore CHI current drive mechanisms in a new approach such as Multi-pulsing CHI method. To study the dynamo model with two-fluid Hall effects, we have started from the generalized Ohm law. We have measured each MHD dynamo term and Hall dynamo term separately by using Mach probe and Hall probe involving 3-axis magnetic pick-up coils. The result shows that the induced electric field due to MHD dynamo is large enough to sustain the mean toroidal current against resistive decay in the core region. In the other hand, the anti-dynamo effect in the MHD dynamo term is observed in the central open flux column (OFC) region. From the viewpoint of two-fluid theory, ion diamagnetic drift is opposite to the electron diamagnetic drift, maybe resulting in the anti-dynamo effect. Hall dynamo may arise from the fluctuating electron diamagnetic current due to high electron density gradient which is large in the OFC region.

Two-fluid flowing equilibria of spherical torus sustained by coaxial helicity injection

NASA Astrophysics Data System (ADS)

Kanki, Takashi; Steinhauer, Loren; Nagata, Masayoshi

2007-11-01

Two-dimensional equilibria in helicity-driven systems using two-fluid model were previously computed, showing the existence of an ultra-low-q spherical torus (ST) configuration with diamagnetism and higher beta. However, this computation assumed purely toroidal ion flow and uniform density. The purpose of the present study is to apply the two-fluid model to the two-dimensional equilibria of helicity-driven ST with non-uniform density and both toroidal and poloidal flows for each species by means of the nearby-fluids procedure, and to explore their properties. We focus our attention on the equilibria relevant to the HIST device, which are characterized by either driven or decaying λ profiles. The equilibrium for the driven λ profile has a diamagnetic toroidal field, high-β (βt = 32%), and centrally broad density. By contrast, the decaying equilibrium has a paramagnetic toroidal field, low-β (βt = 10%), and centrally peaked density with a steep gradient in the outer edge region. In the driven case, the toroidal ion and electron flows are in the same direction, and two-fluid effects are less important since the ExB drift is dominant. In the decaying case, the toroidal ion and electron flows are opposite in the outer edge region, and two-fluid effects are significant locally in the edge due to the ion diamagnetic drift.

Velocity and displacement statistics in a stochastic model of nonlinear friction showing bounded particle speed

NASA Astrophysics Data System (ADS)

Menzel, Andreas M.

2015-11-01

Diffusion of colloidal particles in a complex environment such as polymer networks or biological cells is a topic of high complexity with significant biological and medical relevance. In such situations, the interaction between the surroundings and the particle motion has to be taken into account. We analyze a simplified diffusion model that includes some aspects of a complex environment in the framework of a nonlinear friction process: at low particle speeds, friction grows linearly with the particle velocity as for regular viscous friction; it grows more than linearly at higher particle speeds; finally, at a maximum of the possible particle speed, the friction diverges. In addition to bare diffusion, we study the influence of a constant drift force acting on the diffusing particle. While the corresponding stationary velocity distributions can be derived analytically, the displacement statistics generally must be determined numerically. However, as a benefit of our model, analytical progress can be made in one case of a special maximum particle speed. The effect of a drift force in this case is analytically determined by perturbation theory. It will be interesting in the future to compare our results to real experimental systems. One realization could be magnetic colloidal particles diffusing through a shear-thickening environment such as starch suspensions, possibly exposed to an external magnetic field gradient.

Self-consistent quasi-static parallel electric field associated with substorm growth phase

NASA Astrophysics Data System (ADS)

Le Contel, O.; Pellat, R.; Roux, A.

2000-06-01

A new approach is proposed to calculate the self-consistent parallel electric field associated with the response of a plasma to quasi-static electromagnetic perturbations (ωωd<ω and ωd>ω (ωd being the bounce averaged magnetic drift frequency equal to kyvd, where ky is the wave number in the y direction and vd the bounce averaged magnetic drift velocity). The first regime (ωd<ω) corresponds to small particle energy and/or small ky, while the second regime (ωd>ω) is adapted to large energies and/or large ky. In particular, in the limit ωd<ω and |vd|<|uy|, where uy is the diamagnetic velocity proportional to the pressure gradient, we find a parallel electric field proportional to the pressure gradient and directed toward the ionosphere in the dusk sector and toward the equator in the dawn sector. This parallel electric field corresponds to a potential drop of a few hundred volts that can accelerate electrons and produce a differential drift between electrons and ions.

Upregulation of Integrin-α6 and Integrin-β1 Gene Expressions in Mouse Spermatogonial Stem Cells after Continues and Pulsed Low Intensity Ultrasound Stimulation

PubMed Central

Mohaqiq, Mahdi; Movahedin, Mansoureh; Mokhtari Dizaji, Manijhe; Mazaheri, Zohreh

2018-01-01

Objective low intensity ultrasound (continues and pulsed) is a form of energy. Spermatogonial stem cells (SSCs) are at the base of male fertility. This study investigated the effects of low intensity ultrasound stimulation (LIUS) and low intensity pulsed ultrasound stimulation (LIUPS) on the expression of germ cell-specific and pluripotency genes in SSCs in vitro. Materials and Methods In this experimental study, isolated SSCs from neonatal male mice were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) with 10% fetal bovine serum (FBS). In addition, to confirm identification of SSCs, PLZF protein was detected positively in SSCs derived colonies. SSCs were stimulated by LIUS and LIUPS for 5 days, followed by assessment of expression of integrin-α6 (Itga6) and β1 (Itgβ1), as two germ cell-specific genes, and Oct- 4, as a pluripotency gene, on day 21st by quantitive reverse transcriptase-polymerase chain reaction (qRT-PCR). To investigate the proliferation rate and colonization of SSCs in different groups, counting whole number of the cells and colonies as well as analysis of the respective diameters were performed on days 7th, 14th and 21st. Data was analyzed by ANOVA test. Results LIUS and LIUPS treatment of mouse SSCs increased expression of Itga6 and Itgβ1 genes in the experimental groups, compared to the control group (P<0.05), whereas there was no significant difference between the groups, regarding the expression of Oct-4 gene. These treatments maintained survival rate, while they increased proliferation rate and colonization of SSCs during the first week of culture. However, within the second week, proliferation rate and colonization were decreased in the experimental groups. Conclusion These results suggested that LIUS and LIUPS treatment had good effect on SSCs proliferation and colonization, based on the gene-specific marker expression during 21 days culture in vitro. PMID:29105399

Patterns of Change in Collaboration Are Associated with Baseline Characteristics and Predict Outcome and Dropout Rates in Treatment of Multi-Problem Families. A Validation Study

PubMed Central

Bachler, Egon; Fruehmann, Alexander; Bachler, Herbert; Aas, Benjamin; Nickel, Marius; Schiepek, Guenter K.

2017-01-01

Objective: The present study validates the Multi-Problem Family (MPF)-Collaboration Scale), which measures the progress of goal directed collaboration of patients in the treatment of families with MPF and its relation to drop-out rates and treatment outcome. Method: Naturalistic study of symptom and competence-related changes in children of ages 4–18 and their caregivers. Setting: Integrative, structural outreach family therapy. Measures: The data of five different groups of goal directed collaboration (deteriorating collaboration, stable low collaboration, stable medium collaboration, stable high collaboration, improving collaboration) were analyzed in their relation to treatment expectation, individual therapeutic goals (ITG), family adversity index, severity of problems and global assessment of a caregiver’s functioning, child, and relational aspects. Results: From N = 810 families, 20% displayed stable high collaboration (n = 162) and 21% had a pattern of improving collaboration. The families with stable high or improving collaboration rates achieved significantly more progress throughout therapy in terms of treatment outcome expectancy (d = 0.96; r = 0.43), reaching ITG (d = 1.17; r = 0.50), family adversities (d = 0.55; r = 0.26), and severity of psychiatric symptoms (d = 0.31; r = 0.15). Furthermore, families with stable high or improving collaboration maintained longer treatments and had a bigger chance of finishing the therapy as planned. The odds of having a stable low or deteriorating collaboration throughout treatment were significantly higher for subjects who started treatment with low treatment expectation or high family-related adversities. Conclusion: The positive outcomes of homebased interventions for multi-problem families are closely related to “stable high” and an “improving” collaboration as measured with the MPF-Collaboration Scale. Patients who fall into these groups have a high treatment outcome expectancy and reduce psychological stress. For therapeutic interventions with multi-problem families it seems beneficial to maintain a stable high collaboration or help the collaboration, e.g., by fostering treatment expectation. PMID:28785232

Identification of specific angiotensin-converting enzyme variants and haplotypes that confer risk and protection against type 2 diabetic nephropathy.

PubMed

Ezzidi, Intissar; Mtiraoui, Nabil; Kacem, Maha; Chaieb, Molka; Mahjoub, Touhami; Almawi, Wassim Y

2009-11-01

Cross-sectional and family studies identified angiotensin-converting enzyme (ACE) gene as a risk factor for diabetic nephropathy (DN). The contribution of ACE gene variants to DN development and progression is controversial and varies among different ethnic/racial groups. We investigated the association of three ACE gene variants with DN, rs1799752 insertion/deletion (I/D), rs1800764T/C and rs12449782A/G in 917 Tunisian type 2 diabetic (T2DM) patients: 515 with (DN) and 402 without (DWN) nephropathy. ACE genotyping was done by PCR-based assays; haplotype estimation was performed using H-Plus software (chi(2)-test based). Genotype frequency distributions of the three studied variants were in Hardy-Weinberg equilibrium. Minor allele frequency of rs1800764 was higher in DN patients than DWN patients or healthy controls, and minor allele frequency of rs1799752 was higher in DN than DWN patients. Higher frequency of rs1799752 and rs1800764 homozygous mutant genotypes was seen in DN compared to DWN patients. Of the three variants, only rs1799752 deletion/deletion (D/D) genotype was associated with a significant increase in albumin to creatinine ratios levels, and D/D carriers had elevated low-density lipoprotein, total cholesterol and urea. Three locus haplotype [rs1799752(I/D)/rs1800764(T/C)/rs12449782(A/G)] analysis revealed that the frequency of DCG haplotype was higher, while that of ITG and ICA haplotypes were lower among unselected type 2 diabetic patients. Taking ITA haplotype as reference, multivariate regression analysis confirmed the negative (ITG), and positive (DCG, DTG, DCA and DTA) association of specific ACE haplotypes with DN, after adjusting for potential nephropathy-linked covariates. Our results support the involvement of specific ACE variants in DN pathogenesis and demonstrate the presence of DN-specific haplotypes at the ACE locus.