Sample records for gradient sedimentation analysis
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Hong, Youwei; Yu, Shen; Yu, Guangbin; Liu, Yi; Li, Guilin; Wang, Min
2012-06-01
Organic pollutants, especially synthetic organic compounds, can indicate paces of anthropogenic activities. Effects of urbanization on polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) distributions in surface sediment were conducted in urban sections of the Grand Canal, China, consisting of a four-level urbanization gradient. The four-level urbanization gradients include three countryside towns, two small-size cities, three medium-size cities, and a large-size city. Diagnostic ratio analysis and factor analysis-multiple linear regression model were used for source apportionment of PAHs. Sediment quality guidelines (SQGs) of USA and Canada were employed to assess ecological risks of PAHs and PCBs in surface sediments of the Canal. Ranges of PAH and PCB concentrations in surface sediments were 0.66-22 mg/kg and 0.5-93 μg/kg, respectively. Coal-related sources were primary PAH sources and followed by vehicular emission. Total concentration, composition, and source apportionment of PAHs exhibited urbanization gradient effects. Total PCB concentrations increased with the urbanization gradient, while total PAHs concentration in surface sediments presented an inverted U Kuznets curve with the urbanization gradient. Elevated concentrations of both PAHs and PCBs ranged at effect range low levels or interim SQG, assessed by USA and Canadian SQGs. PAHs and PCBs in surface sediments of the Grand Canal showed urbanization gradient effects and low ecological risks.
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Belzunces, L P; Toutant, J P; Bounias, M
1988-01-01
The polymorphism of bee acetylcholinesterase was studied by sucrose-gradient-sedimentation analysis and non-denaturing electrophoretic analysis of fresh extracts. Lubrol-containing extracts exhibited only one form, which sedimented at 5 S when analysed on high-salt Lubrol-containing gradients and 6 S when analysed on low-salt Lubrol-containing gradients. The 5 S/6 S form aggregated upon removal of the detergent when sedimented on detergent-free gradients and was recovered in the detergent phase after Triton X-114 phase separation. Thus the 5 S/6 S enzyme corresponds to an amphiphilic acetylcholinesterase form. In detergent-free extracts three forms, whose apparent sedimentation coefficients are 14 S, 11 S and 7 S, were observed when sedimentations were performed on detergent-free gradients. Sedimentation analyses on detergent-containing gradients showed only a 5 S peak in high-salt detergent-free extracts and a 6 S peak, with a shoulder at about 7 S, in low-salt detergent-free extracts. Electrophoretic analysis in the presence of detergent demonstrated that the 14 S and 11 S peaks corresponded to aggregates of the 5 S/6 S form, whereas the 7 S peak corresponded to a hydrophilic acetylcholinesterase form which was recovered in the aqueous phase following Triton X-114 phase separation. The 5 S/6 S amphiphilic form could be converted into a 7.1 S hydrophilic form by phosphatidylinositol-specific phospholipase C digestion. Images Fig. 3. Fig. 6. PMID:2849414
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Bacterial communities associated with seagrass bed sediments are not well studied. The work presented here investigated several factors, including the presence or absence of vegetation, depth into sediment, and season, and their impact on bacterial community diversity. Double gra...
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Maier, Katherine L.; Brothers, Daniel; Paull, Charles K.; McGann, Mary; Caress, David W.; Conrad, James E.
2016-01-01
Variations in seabed gradient are widely acknowledged to influence deep-water deposition, but are often difficult to measure in sufficient detail from both modern and ancient examples. On the continental slope offshore Los Angeles, California, autonomous underwater vehicle, remotely operated vehicle, and shipboard methods were used to collect a dense grid of high-resolution multibeam bathymetry, chirp sub-bottom profiles, and targeted sediment core samples that demonstrate the influence of seafloor gradient on sediment accumulation, depositional environment, grain size of deposits, and seafloor morphology. In this setting, restraining and releasing bends along the active right-lateral Palos Verdes Fault create and maintain variations in seafloor gradient. Holocene down-slope flows appear to have been generated by slope failure, primarily on the uppermost slope (~ 100–200 m water depth). Turbidity currents created a low relief (< 10 m) channel, up-slope migrating sediment waves (λ = ~ 100 m, h ≤ 2 m), and a series of depocenters that have accumulated up to 4 m of Holocene sediment. Sediment waves increase in wavelength and decrease in wave height with decreasing gradient. Integrated analysis of high-resolution datasets provides quantification of morphodynamic sensitivity to seafloor gradients acting throughout deep-water depositional systems. These results help to bridge gaps in scale between existing deep-sea and experimental datasets and may provide constraints for future numerical modeling studies.
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MICROBIAL DIVERSITY IN SURFACE SEDIMENTS: A COMPARISON OF TWO ESTUARINE CONTINUUMS
The microbial diversity in estuarine sediments of the Altamaha and Savannah Rivers in Georgia were compared temporally and spatially using phospholipid fatty acid (PLFA) analysis. Surface sediment samples collected along a salinity gradient were also analyzed for ATP, TOC, and C ...
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dos Santos, A C F; Marques, E L S; Gross, E; Souza, S S; Dias, J C T; Brendel, M; Rezende, R P
2012-01-27
Currently, the effect of crude oil on ammonia-oxidizing bacterium communities from mangrove sediments is little understood. We studied the diversity of ammonia-oxidizing bacteria in mangrove microcosm experiments using mangrove sediments contaminated with 0.1, 0.5, 1, 2, and 5% crude oil as well as non-contaminated control and landfarm soil from near an oil refinery in Camamu Bay in Bahia, Brazil. The evolution of CO(2) production in all crude oil-contaminated microcosms showed potential for mineralization. Cluster analysis of denaturing gradient gel electrophoresis-derived samples generated with primers for gene amoA, which encodes the functional enzyme ammonia monooxygenase, showed differences in the sample contaminated with 5% compared to the other samples. Principal component analysis showed divergence of the non-contaminated samples from the 5% crude oil-contaminated sediment. A Venn diagram generated from the banding pattern of PCR-denaturing gradient gel electrophoresis was used to look for operational taxonomic units (OTUs) in common. Eight OTUs were found in non-contaminated sediments and in samples contaminated with 0.5, 1, or 2% crude oil. A Jaccard similarity index of 50% was found for samples contaminated with 0.1, 0.5, 1, and 2% crude oil. This is the first study that focuses on the impact of crude oil on the ammonia-oxidizing bacterium community in mangrove sediments from Camamu Bay.
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He, Ji-Jun; Cai, Qiang-Guo; Liu, Song-Bo
2012-05-01
Based on the field observation data of runoff and sediment yield produced by single rainfall events in runoff plots, this paper analyzed the variation patterns of runoff and sediment yield on the slopes with different gradients under different single rainfall conditions. The differences in the rainfall conditions had little effects on the variation patterns of slope runoff with the gradient. Under the conditions of six different rainfall events in the study area, the variation patterns of slope runoff with the gradient were basically the same, i. e., the runoff increased with increasing gradient, but the increment of the runoff decreased slightly with increasing gradient, which was mainly determined by the infiltration flux of atmospheric precipitation. Rainfall condition played an important role on the slope sediment yield. Generally, there existed a critical slope gradient for slope erosion, but the critical gradient was not a fixed value, which varied with rainfall condition. The critical slope gradient for slope erosion increased with increasing slope gradient. When the critical slope gradient was greater, the variation of slope sediment yield with slope gradient always became larger.
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Zhu, Yao-Jun; Bourgeois, C; Lin, Guang-Xuan; Wu, Xiao-Dong; Guo, Ju-Lan; Guo, Zhi-Hua
2012-08-01
Mangrove wetland is an important type of coastal wetlands, and also, an important sediment trap. Sediment is an essential medium for mangrove recruitment and development, which records the environmental history of mangrove wetlands and can be used for the analysis of material sources and the inference of the materials depositing process, being essential to the ecological restoration and conservation of mangrove. In this paper, surface sediment samples were collected along a hydrodynamic gradient in Gaoqiao, Zhanjiang Mangrove National Nature Reserve in 2011. The characteristics of the surface sediments were analyzed based on grain size analysis, and the prediction surfaces were generated by the geo-statistical methods with ArcGIS 9.2 software. A correlation analysis was also conducted on the sediment organic matter content and the mangrove community structure. In the study area, clay and silt dominated the sediment texture, and the mean content of sand, silt, and clay was (27.8 +/- 15.4)%, (40.3 +/- 15.4)%, and (32.1 +/- 11.4)%, respectively. The spatial gradient of the sediment characteristics was expressed in apparent interpolation raster. With increasing distance from the seawall, the sediment sand content increased, clay content decreased, and silt content was relatively stable at a certain level. There was a positive correlation between the contents of sediment organic matter and silt, and a negative correlation between the contents of sediment organic matter and sand. Much more sediment organic matter was located at the high tide area with weak tide energy. There existed apparent discrepancies in the characteristics of the surface sediments in different biotopes. The sediment characteristics had definite correlations with the community structure of mangroves, reflecting the complicated correlations between the hydrodynamic conditions and the mangroves.
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NASA Astrophysics Data System (ADS)
Kittelmann, S.; Friedrich, M. W.
2005-12-01
Tetrachloroethene (perchloroethylene, PCE), a persistent contaminant in aquifers, soils and sediments, can be reductively dechlorinated by anaerobic microorganisms in a process referred to as dehalorespiration. However, the biodiversity of dehalorespiring microorganisms and their distribution especially in pristine environments is largely unexplored. Therefore, the aim of this study was to detect potentially novel PCE-dehalorespiring microorganisms by using stable isotope probing (SIP), a technique that allows to directly identify the function of uncultivated microbial populations. We simulated a PCE contamination by incubating pristine river sediment in the presence of PCE at a steady, low aqueous concentration (20 μM). Dehalogenation activity in microcosms (20 nmol cis-dichloroethene per ml slurry per day formed) was detected already after 4 weeks at 20°C with sediment indigenous electron donors. The microbial community in sediment incubations was probed with 13C-labelled acetate (0.5 mM) as electron donor and carbon source at 15°C for 3 days. After RNA extraction, "heavy" 13C-rRNA and light 12C-rRNA were separated by isopycnic centrifugation, and Bacteria-related populations in gradient fractions were characterised by terminal restriction fragment length polymorphism analysis and cloning. In heavy gradient fractions from the microcosm with PCE, we detected a prominent 506-bp terminal restriction fragment (T-RF) and a few minor T-RFs only. In contrast, in the control without PCE, Bacteria-specific rRNA was restricted to light gradient fractions, and the prominent T-RFs found in the PCE-dechlorinating microcosm were of minor importance. Apparently, 13C-acetate was incorporated into bacterial rRNA more effectively in PCE-respiring microcosms. Thus, rRNA-SIP provides strong evidence for the presence of PCE-dehalorespiring, 13C-acetate-utilising populations in river sediment microcosms. Cloning/sequencing analysis identified the prominent members of the heavy gradient fractions as members of the phylum Chloroflexi only distantly related to cultivated dechlorinating Dehalococcides spp.
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Ma, Jun; Liu, Yi; Yu, Guangbin; Li, Hongbo; Yu, Shen; Jiang, Yueping; Li, Guilin; Lin, Jinchang
2016-05-15
Spatial patterns of metal distribution along urban-rural or multi-city gradients indicate that the urbanization process directly lead to metal enrichment and contamination in the environments. However, it has not yet looked at homogenization dynamics of an urban-rural gradient pattern over time with urbanization process in an area. This study monitored anthropogenic metals (Cr, Cu, Pb, and Zn) in surface sediments from channels of a newly-opened National Wetland Park to elucidate the urbanization-driven dissolution of urban-rural gradient pattern between 2008 and 2011. Sixty-eight surface sediment samples were taken from these channels in July of both 2008 and 2011. Results showed that a spatial distribution pattern of total metal contents along the gradient of urbanization influence, evident in 2008, was homogenized in 2011 with the area development. The lead stable isotope ratio analysis identified anthropogenic Pb origins from vehicular exhausts, cements, and coal flying ashes, which elevated metal contents in the inner channels via atmospheric deposition. Specific hazard quotients of the metal contamination in surface sediment were also assessed and enhanced over time in the study wetland park. These findings suggest that emissions from traffic, construction, and energy generation contribute metal loadings in the urbanizing environment. Copyright © 2016 Elsevier B.V. All rights reserved.
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Modeling sediment concentration of rill flow
NASA Astrophysics Data System (ADS)
Yang, Daming; Gao, Peiling; Zhao, Yadong; Zhang, Yuhang; Liu, Xiaoyuan; Zhang, Qingwen
2018-06-01
Accurate estimation of sediment concentration is essential to establish physically-based erosion models. The objectives of this study were to evaluate the effects of flow discharge (Q), slope gradient (S), flow velocity (V), shear stress (τ), stream power (ω) and unit stream power (U) on sediment concentration. Laboratory experiments were conducted using a 10 × 0.1 m rill flume under four flow discharges (2, 4, 8 and 16 L min-1), and five slope gradients (5°, 10°, 15°, 20° and 25°). The results showed that the measured sediment concentration varied from 87.08 to 620.80 kg m-3 with a mean value of 343.13 kg m-3. Sediment concentration increased as a power function with flow discharge and slope gradient, with R2 = 0.975 and NSE = 0.945. The sediment concentration was more sensitive to slope gradient than to flow discharge. The sediment concentration was well predicted by unit stream power (R2 = 0.937, NSE = 0.865), whereas less satisfactorily by flow velocity (R2 = 0.470, NSE = 0.539) and stream power (R2 = 0.773, NSE = 0.732). In addition, using the equations to simulate the measured sediment concentration of other studies, the result further indicated that slope gradient, flow discharge and unit stream power were good predictors of sediment concentration. In general, slope gradient, flow discharge and unit stream power seem to be the preferred predictors for estimating sediment concentration.
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Ortmann, Alice C; Brannock, Pamela M; Wang, Lei; Halanych, Kenneth M
2018-04-17
Meiobenthic community structure in the northern Gulf of Mexico has been shown to be driven by geographical differences due to inshore-offshore gradients and location relative to river discharge. Samples collected along three transects spanning Mobile Bay, Alabama, showed significant differences in meiobenthic communities east of the bay compared to those sampled from the west. In contrast, analysis of bacterial and archaeal communities from the same sediment samples shows that the inshore-offshore gradient has minimal impact on their community structure. Significant differences in community structure were observed for Bacteria and Archaea between the east and west samples, but there was no difference in richness or diversity. Grouped by sediment type, higher richness was observed in silty samples compared to sandy samples. Significant differences were also observed among sediment types for community structure with bacteria communities in silty samples having more anaerobic sulfate reducers compared to aerobic heterotrophs, which had higher abundances in sandy sediments. This is likely due to increased organic matter in the silty sediments from the overlying river leading to low oxygen habitats. Most archaeal sequences represented poorly characterized high-level taxa, limiting interpretation of their distributions. Overlap between groups based on transect and sediment characteristics made determining which factor is more important in structuring bacterial and archaeal communities difficult. However, both factors are driven by discharge from the Mobile River. Although inshore-offshore gradients do not affect Bacteria or Archaea to the same extent as the meiobenthic communities, all three groups are strongly affected by sediment characteristics.
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Aquatic vegetation and trophic condition of Cape Cod (Massachusetts, U.S.A.) kettle ponds
Roman, C.T.; Barrett, N.E.; Portnoy, J.W.
2001-01-01
The species composition and relative abundance of aquatic macrophytes was evaluated in five Cape Cod, Massachusetts, freshwater kettle ponds, representing a range of trophic conditions from oligotrophic to eutrophic. At each pond, aquatic vegetation and environmental variables (slope, water depth, sediment bulk density, sediment grain size, sediment organic content and porewater inorganic nutrients) were measured along five transects extending perpendicular to the shoreline from the upland border into the pond. Based on a variety of multivariate methods, including Detrended Correspondence Analysis (DCA), an indirect gradient analysis technique, and Canonical Correspondence Analysis (CCA), a direct gradient approach, it was determined that the eutrophic Herring Pond was dominated by floating aquatic vegetation (Brasenia schreberi, Nymphoides cordata, Nymphaea odorata), and the algal stonewort, Nitella. Partial CCA suggested that high porewater PO4-P concentrations and fine-grained sediments strongly influenced the vegetation of this eutrophic pond. In contrast, vegetation of the oligotrophic Duck Pond was sparse, contained no floating aquatics, and was dominated by emergent plants. Low porewater nutrients, low sediment organic content, high water clarity and low pH (4.8) best defined the environmental characteristics of this oligotrophic pond. Gull Pond, with inorganic nitrogen-enriched sediments, also exhibited a flora quite different from the oligotrophic Duck Pond. The species composition and relative abundance of aquatic macrophytes provide good indicators of the trophic status of freshwater ponds and should be incorporated into long-term monitoring programs aimed at detecting responses to anthropogenically-derived nutrient loading.
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Aquatic vegetation and trophic condition of Cape Cod (Massachusetts, USA) kettle ponds
Roman, C.T.; Barrett, N.E.; Portnoy, J.W.
2001-01-01
The species composition and relative abundance of aquatic macrophytes was evaluated in five Cape Cod, Massachusetts, freshwater kettle ponds, representing a range of trophic conditions from oligotrophic to eutrophic. At each pond, aquatic vegetation and environmental variables (slope, water depth, sediment bulk density, sediment grain size, sediment organic content and porewater inorganic nutrients) were measured along five transects extending perpendicular to the shoreline from the upland border into the pond. Based on a variety of multivariate methods, including Detrended Correspondence Analysis (DCA), an indirect gradient analysis technique, and Canonical Correspondence Analysis (CCA), a direct gradient approach, it was determined that the eutrophic Herring Pond was dominated by floating aquatic vegetation (Brasenia schreberi, Nymphoides cordata, Nymphaea odorata), and the algal stonewort, Nitella. Partial CCA suggested that high porewater PO4-P concentrations and fine-grained sediments strongly influenced the vegetation of this eutrophic pond. In contrast, vegetation of the oligotrophic Duck Pond was sparse, contained no floating aquatics, and was dominated by emergent plants. Low porewater nutrients, low sediment organic content, high water clarity and low pH (4.8) best defined the environmental characteristics of this oligotrophic pond. Gull Pond, with inorganic nitrogen-enriched sediments, also exhibited a flora quite different from the oligotrophic Duck Pond. The species composition and relative abundance of aquatic macrophytes provide good indicators of the trophic status of freshwater ponds and should be incorporated into long-term monitoring programs aimed at detecting responses to anthropogenically-derived nutrient loading.
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Zhang, Li-Mei; Duff, Aoife M; Smith, Cindy J
2018-04-24
Terrestrial-marine boundaries are significant sites of biogeochemical activity with delineated gradients from land to sea. While niche differentiation of ammonia-oxidizing archaea (AOA) and bacteria (AOB) driven by pH and nitrogen is well known, the patterns and environmental drivers of AOA and AOB community structure and activity across soil-sediment boundaries have not yet been determined. In this study, nitrification potential rate, community composition and transcriptional activity of AOA and AOB in soil, soil/sediment interface and sediments of two coastal Bays were characterized using a combination of field investigations and microcosm incubations. At DNA level, amoA gene abundances of AOA were significantly greater than AOB in soil, while in sediments AOB were significantly more abundant than AOA, but at the soil/sediment interface there were equal numbers of AOA and AOB amoA genes. Microcosm incubations provided further evidence, through qPCR and DGGE-sequencing analysis of amoA transcripts, that AOA were active in soil, AOB in sediment and both AOA and AOB were active at the soil/sediment interface. The AOA and AOB community composition shifted across the coastal soil-interface-sediment gradient with salinity and pH identified as major environmental drivers. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.
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Metal concentrations in urban riparian sediments along an urbanization gradient
Daniel J. Bain; Ian D. Yesilonis; Richard V. Pouyat
2012-01-01
Urbanization impacts fluvial systems via a combination of changes in sediment chemistry and basin hydrology. While chemical changes in urban soils have been well characterized, similar surveys of riparian sediments in urbanized areas are rare. Metal concentrations were measured in sediments collected from riparian areas across the urbanization gradient in Baltimore, MD...
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A Model based Examination of Conditions for Ignition of Turbidity Currents on Slopes
NASA Astrophysics Data System (ADS)
Mehta, A. J.; Krishna, G.
2009-12-01
Turbidity currents form a major mechanism for the movement of sediment in the natural environment. Self-accelerating turbidity currents over continental slopes are of considerable scientific and engineering interest due to their role as agents for submarine sediment transportation from the shelf to the seabed. Such currents are called ignitive provided they eventually reach a catastrophic state as acceleration results in high sediment loads due to erosion of the sloping bed. A numerical model, which treats the fluid and the particles as two separate phases, is applied to investigate the effects of particle size, initial flow friction velocity and mild bed slope on the ignitive condition. Laboratory experimental data have been included as part of the analysis for qualitative comparison purposes. Ignition for the smallest of the three selected sizes (0.21mm) of medium sand typical of Florida beaches was found to depend on the initial conditions at the head of the slope as determined by the pressure gradient. Bed slope seemed to be of secondary importance. For the two sands with larger grain sizes (0.28mm and 0.35mm) the slope was found to play a more important role when compared to the initial pressure gradient. For a given pressure gradient, increasing the slope increased the likelihood of self-acceleration. It is concluded that in general ignition cannot be defined merely in terms of positive values of the velocity gradient and the sediment flux gradient along the slope. Depending on particle size the initial pressure gradient can also play a role. For the selected initial conditions (grain size, pressure gradient and bed slope), out of the 54 combinations tested, all except three satisfied the Knapp-Bagnold criterion for auto-suspension irrespective of whether the turbid current was ignitive or non-ignitive. In all 54 cases the current was found to erode the bed. Further use of the model will require accommodation of wider ranges of sediment size and bed density, and a thorough verification against experimental data.
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Observations of wave-induced pore pressure gradients and bed level response on a surf zone sandbar
NASA Astrophysics Data System (ADS)
Anderson, Dylan; Cox, Dan; Mieras, Ryan; Puleo, Jack A.; Hsu, Tian-Jian
2017-06-01
Horizontal and vertical pressure gradients may be important physical mechanisms contributing to onshore sediment transport beneath steep, near-breaking waves in the surf zone. A barred beach was constructed in a large-scale laboratory wave flume with a fixed profile containing a mobile sediment layer on the crest of the sandbar. Horizontal and vertical pore pressure gradients were obtained by finite differences of measurements from an array of pressure transducers buried within the upper several centimeters of the bed. Colocated observations of erosion depth were made during asymmetric wave trials with wave heights between 0.10 and 0.98 m, consistently resulting in onshore sheet flow sediment transport. The pore pressure gradient vector within the bed exhibited temporal rotations during each wave cycle, directed predominantly upward under the trough and then rapidly rotating onshore and downward as the wavefront passed. The magnitude of the pore pressure gradient during each phase of rotation was correlated with local wave steepness and relative depth. Momentary bed failures as deep as 20 grain diameters were coincident with sharp increases in the onshore-directed pore pressure gradients, but occurred at horizontal pressure gradients less than theoretical critical values for initiation of the motion for compact beds. An expression combining the effects of both horizontal and vertical pore pressure gradients with bed shear stress and soil stability is used to determine that failure of the bed is initiated at nonnegligible values of both forces.
Plain Language SummaryThe pressure gradient present within the seabed beneath breaking waves may be an important physical mechanism transporting sediment. A large-scale laboratory was used to replicate realistic surfzone conditions in controlled tests, allowing for horizontal and vertical pressure gradient magnitudes and the resulting sediment bed response to be observed with precise instruments. Contrary to previous studies, the pore pressure gradient exhibited a range of values when erosion occurred, which indicates that erosion is the result of multiple physical mechanisms competing to secure or destabilize the sediment bed. The observations provide a better understanding of the forces acting within the sediment, and could improve parameters used in coastal sediment transport models to better predict coastal change.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70179130','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70179130"><span>Barrier island breach evolution: Alongshore transport and bay-ocean pressure gradient interactions</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Safak, Ilgar; Warner, John C.; List, Jeffrey</p> <p>2016-01-01</p> <p>Physical processes controlling repeated openings and closures of a barrier island breach between a bay and the open ocean are studied using aerial photographs and atmospheric and hydrodynamic observations. The breach site is located on Pea Island along the Outer Banks, separating Pamlico Sound from the Atlantic Ocean. Wind direction was a major control on the pressure gradients between the bay and the ocean to drive flows that initiate or maintain the breach opening. Alongshore sediment flux was found to be a major contributor to breach closure. During the analysis period from 2011 to 2016, three hurricanes had major impacts on the breach. First, Hurricane Irene opened the breach with wind-driven flow from bay to ocean in August 2011. Hurricane Sandy in October 2012 quadrupled the channel width from pressure gradient flows due to water levels that were first higher on the ocean side and then higher on the bay side. The breach closed sometime in Spring 2013, most likely due to an event associated with strong alongshore sediment flux but minimal ocean-bay pressure gradients. Then, in July 2014, Hurricane Arthur briefly opened the breach again from the bay side, in a similar fashion to Irene. In summary, opening and closure of breaches are shown to follow a dynamic and episodic balance between along-channel pressure gradient driven flows and alongshore sediment fluxes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25960275','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25960275"><span>Biological effects of long term fine limestone tailings discharge in a fjord ecosystem.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Brooks, Lucy; Melsom, Fredrik; Glette, Tormod</p> <p>2015-07-15</p> <p>Benthic infaunal data collected from 1993 to 2010 were analysed to examine the effect of long term discharge of fine limestone tailings on macrofaunal species assemblages in a fjord. Relative distance from the outfall and proportion of fine tailings in the sediment were correlated with benthic community structure. Diversity decreased with increasing proportion of fine tailings. Biological Traits Analysis (BTA) was used to explore the temporal and spatial effects of the tailings gradient on macrofaunal functional attributes. BTA revealed that all stations along a pressure gradient of fine limestone tailings were dominated by free-living species. As the proportion of fine tailings in the sediment increased, there was an increase in fauna that were smaller, highly mobile, living on or nearer the surface sediment, with shorter lifespans. There was a decrease in permanent tube dwellers, those fauna with low or no mobility, that live deeper in the sediment and have longer lifespans (>5 yrs). Copyright © 2015 Elsevier Ltd. All rights reserved.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li class="active"><span>1</span></li> <li><a href="#" onclick='return showDiv("page_2");'>2</a></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_1 --> <div id="page_2" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_1");'>1</a></li> <li class="active"><span>2</span></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="21"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.cerf-jcr.org/index.php/international-coastal-symposium/ics-2009portugal/1328-littoral-transport-rates-in-the-santa-barbara-littoral-cell-a-process-based-model-analysis-epl-elias-pl-barnard-and-j-brocatus','USGSPUBS'); return false;" href="http://www.cerf-jcr.org/index.php/international-coastal-symposium/ics-2009portugal/1328-littoral-transport-rates-in-the-santa-barbara-littoral-cell-a-process-based-model-analysis-epl-elias-pl-barnard-and-j-brocatus"><span>Littoral transport rates in the Santa Barbara Littoral Cell: a process-based model analysis</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Elias, E. P. L.; Barnard, Patrick L.; Brocatus, John</p> <p>2009-01-01</p> <p>Identification of the sediment transport patterns and pathways is essential for sustainable coastal zone management of the heavily modified coastline of Santa Barbara and Ventura County (California, USA). A process-based model application, based on Delft3D Online Morphology, is used to investigate the littoral transport potential along the Santa Barbara Littoral Cell (between Point Conception and Mugu Canyon). An advanced optimalization procedure is applied to enable annual sediment transport computations by reducing the ocean wave climate in 10 wave height - direction classes. Modeled littoral transport rates compare well with observed dredging volumes, and erosion or sedimentation hotspots coincide with the modeled divergence and convergence of the transport gradients. Sediment transport rates are strongly dependent on the alongshore variation in wave height due to wave sheltering, diffraction and focusing by the Northern Channel Islands, and the local orientation of the geologically-controlled coastline. Local transport gradients exceed the net eastward littoral transport, and are considered a primary driver for hot-spot erosion.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19948847','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19948847"><span>Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Swan, Brandon K; Ehrhardt, Christopher J; Reifel, Kristen M; Moreno, Lilliana I; Valentine, David L</p> <p>2010-02-01</p> <p>Sulfidic, anoxic sediments of the moderately hypersaline Salton Sea contain gradients in salinity and carbon that potentially structure the sedimentary microbial community. We investigated the abundance, community structure, and diversity of Bacteria and Archaea along these gradients to further distinguish the ecologies of these domains outside their established physiological range. Quantitative PCR was used to enumerate 16S rRNA gene abundances of Bacteria, Archaea, and Crenarchaeota. Community structure and diversity were evaluated by terminal restriction fragment length polymorphism (T-RFLP), quantitative analysis of gene (16S rRNA) frequencies of dominant microorganisms, and cloning and sequencing of 16S rRNA. Archaea were numerically dominant at all depths and exhibited a lesser response to environmental gradients than that of Bacteria. The relative abundance of Crenarchaeota was low (0.4 to 22%) at all depths but increased with decreased carbon content and increased salinity. Salinity structured the bacterial community but exerted no significant control on archaeal community structure, which was weakly correlated with total carbon. Partial sequencing of archaeal 16S rRNA genes retrieved from three sediment depths revealed diverse communities of Euryarchaeota and Crenarchaeota, many of which were affiliated with groups previously described from marine sediments. The abundance of these groups across all depths suggests that many putative marine archaeal groups can tolerate elevated salinity (5.0 to 11.8% [wt/vol]) and persist under the anaerobic conditions present in Salton Sea sediments. The differential response of archaeal and bacterial communities to salinity and carbon patterns is consistent with the hypothesis that adaptations to energy stress and availability distinguish the ecologies of these domains.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018AdWR..112...72B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018AdWR..112...72B"><span>Modeling chemical gradients in sediments under losing and gaining flow conditions: The GRADIENT code</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Boano, Fulvio; De Falco, Natalie; Arnon, Shai</p> <p>2018-02-01</p> <p>Interfaces between sediments and water bodies often represent biochemical hotspots for nutrient reactions and are characterized by steep concentration gradients of different reactive solutes. Vertical profiles of these concentrations are routinely collected to obtain information on nutrient dynamics, and simple codes have been developed to analyze these profiles and determine the magnitude and distribution of reaction rates within sediments. However, existing publicly available codes do not consider the potential contribution of water flow in the sediments to nutrient transport, and their applications to field sites with significant water-borne nutrient fluxes may lead to large errors in the estimated reaction rates. To fill this gap, the present work presents GRADIENT, a novel algorithm to evaluate distributions of reaction rates from observed concentration profiles. GRADIENT is a Matlab code that extends a previously published framework to include the role of nutrient advection, and provides robust estimates of reaction rates in sediments with significant water flow. This work discusses the theoretical basis of the method and shows its performance by comparing the results to a series of synthetic data and to laboratory experiments. The results clearly show that in systems with losing or gaining fluxes, the inclusion of such fluxes is critical for estimating local and overall reaction rates in sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2843509','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2843509"><span>BIOCHEMICAL CHARACTERIZATION OF NATIVE USHER PROTEIN COMPLEXES FROM A VESICULAR SUBFRACTION OF TRACHEAL EPITHELIAL CELLS†</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Zallocchi, Marisa; Sisson, Joseph H.; Cosgrove, Dominic</p> <p>2010-01-01</p> <p>Usher syndrome is the major cause of deaf/blindness in the world. It is a genetic heterogeneous disorder, with nine genes already identified as causative for the disease. We noted expression of all known Usher proteins in bovine tracheal epithelial cells, and exploited this system for large-scale biochemical analysis of Usher protein complexes. The dissected epithelia were homogenized in non-detergent buffer, and sedimented on sucrose gradients. At least two complexes were evident after the first gradient: one formed by specific isoforms of CDH23, PCDH15 and VLGR-1, and a different one at the top of the gradient that included all the Usher proteins and rab5, a transport vesicle marker. TEM analysis of these top fractions found them enriched in 100–200 nm vesicles, confirming a vesicular association of the Usher complex(es). Immunoisolation of these vesicles confirmed some of the associations already predicted and identified novel interactions. When the vesicles are lysed in the presence of phenylbutyrate, most of the Usher proteins co-sediment into the gradient at a sedimentation coefficient of approximately 50S, correlating with a predicted molecular mass of 2 × 106 Daltons. Although it is still unclear whether there is only one complex or several independent complexes that are trafficked within distinct vesicular pools, this work shows for the first time that native Usher proteins complexes occur in vivo. This complex(es) is present primarily in transport vesicles at the apical pole of tracheal epithelial cells, predicting that Usher proteins may be directionally transported as complexes in hair cells and photoreceptors. PMID:20058854</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70012674','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70012674"><span>Evaluation and use of a diffusion-controlled sampler for determining chemical and dissolved oxygen gradients at the sediment-water interface</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Simon, N.S.; Kennedy, M.M.; Massoni, C.S.</p> <p>1985-01-01</p> <p>Field and laboratory evaluations were made of a simple, inexpensive diffusion-controlled sampler with ports on two sides at each interval which incorporates 0.2-??m polycarbonate membrane to filter samples in situ. Monovalent and divalent ions reached 90% of equilibrium between sampler contents and the external solution within 3 and 6 hours, respectively. Sediment interstitial water chemical gradients to depths of tens of centimeters were obtained within several days after placement. Gradients were consistent with those determined from interstitial water obtained by centrifugation of adjacent sediment. Ten milliliter sample volumes were collected at 1-cm intervals to determine chemical gradients and dissolved oxygen profiles at depth and at the interface between the sediment and water column. The flux of dissolved species, including oxygen, across the sediment-water interface can be assessed more accurately using this sampler than by using data collected from benthic cores. ?? 1985 Dr W. Junk Publishers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=194920','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=194920"><span>Differences in Hyporheic-Zone Microbial Community Structure along a Heavy-Metal Contamination Gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Feris, Kevin; Ramsey, Philip; Frazar, Chris; Moore, Johnnie N.; Gannon, James E.; Holben, William E.</p> <p>2003-01-01</p> <p>The hyporheic zone of a river is nonphotic, has steep chemical and redox gradients, and has a heterotrophic food web based on the consumption of organic carbon entrained from downwelling surface water or from upwelling groundwater. The microbial communities in the hyporheic zone are an important component of these heterotrophic food webs and perform essential functions in lotic ecosystems. Using a suite of methods (denaturing gradient gel electrophoresis, 16S rRNA phylogeny, phospholipid fatty acid analysis, direct microscopic enumeration, and quantitative PCR), we compared the microbial communities inhabiting the hyporheic zone of six different river sites that encompass a wide range of sediment metal loads resulting from large base-metal mining activity in the region. There was no correlation between sediment metal content and the total hyporheic microbial biomass present within each site. However, microbial community structure showed a significant linear relationship with the sediment metal loads. The abundances of four phylogenetic groups (groups I, II, III, and IV) most closely related to α-, β-, and γ-proteobacteria and the cyanobacteria, respectively, were determined. The sediment metal content gradient was positively correlated with group III abundance and negatively correlated with group II abundance. No correlation was apparent with regard to group I or IV abundance. This is the first documentation of a relationship between fluvially deposited heavy-metal contamination and hyporheic microbial community structure. The information presented here may be useful in predicting long-term effects of heavy-metal contamination in streams and provides a basis for further studies of metal effects on hyporheic microbial communities. PMID:12957946</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFMOS43A2002V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFMOS43A2002V"><span>In Search for Diffuse Hydrothermal Venting at North Pond, Western Flank of the Mid-Atlantic-Ridge</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Villinger, H. W.; Becker, K.; Hulme, S.; Kaul, N. E.; Müller, P.; Wheat, C. G.</p> <p>2015-12-01</p> <p>We present results from temperature measurements made with a ROV temperature lance in sediments deposited on the slopes of abyssal hills and small basins surrounding North Pond. North Pond is a ~8x15 km large sediment basin located on ~7 Ma year old crust west of the Mid-Atlantic Ridge at 23°N. Data were collected with the ROV Jason II during cruise MSM37 on the German RV Maria S. Merian in April 2014. The temperature lance consists of a 60 cm long stainless steel tube (o.d. 12 mm) housing 8 thermistors with a spacing of 80 mm, resulting in an active length of 56 cm. Data are logged with an 8-channel data logger (XR-420-T8, RBR, Ottawa) and transmitted online to the control van of the ROV. Data reduction and temperature gradient calculation is done according to the HFRED algorithm (Villinger & Davis, 1987). 90 sites in total were visited, 88 gave good data for temperature gradient calculation. Calculated gradients are usually of good to very good quality. The gradients vary between less than 20 to more than 1000 mK/m reflecting the very heterogeneous distribution of geothermal heat flow. The expected conductive lithospheric heat flow for North Pond is ~190 mW/m2 (geothermal gradient of ~190 mK/m with a thermal conductivity of 1 W/Km). The highest temperature gradients are measured in places where temperature ~50 cm below the sediment-water boundary exceeds bottom water temperature by ~0.5 K . These high temperature gradients may reflect local hydrothermal circulation within the pillow lavas, however no focused discharge was detected. The analysis of temperature measurements made with the ROV-mounted CTD shows clearly detectable bottom water temperature anomalies. We infer that they are either caused by hydrothermal discharge through the thin sediment cover or through unsedimented pillow basalts nearby. Hydrothermal circulation in a North-Pond-like environment appears to be diffuse in nature, hence very difficult if not impossible to detect and to quantify.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70020444','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70020444"><span>Chemical gradients in sediment cores from an EPA reference site off the Farallon Islands - Assessing chemical indicators of dredged material disposal in the deep sea</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Bothner, Michael H.; Gill, P.W.; Boothman, W.S.; Taylor, B.B.; Karl, Herman A.</p> <p>1998-01-01</p> <p>Heavy metal and organic contaminants have been determined in undisturbed sediment cores from the US Environmental Protection Agency reference site for dredged material on the continental slope off San Francisco. As expected, the concentrations are significantly lower than toxic effects guidelines, but concentrations of PCBs, PAHs, Hg, Pb, and Clostridium perfringens (a bacterium spore found in sewage) were nearly two or more times greater in the surface sediments than in intervals deeper in the cores. These observations indicate the usefulness of measuring concentration gradients in sediments at the San Francisco deep ocean disposal site (SF-DODS) where a thin (0.5 cm thick) layer of dredged material has been observed beyond the boundary. This thin layer has not been chemically characterized by the common practice of homogenizing over the top 10 cm. An estimated 300 million cubic yards of dredged material from San Francisco Bay are expected to be discharged at the SF-DODS site during the next 50 years. Detailed depth analysis of sediment cores would add significant new information about the fate and effects of dredged material in the deep sea.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008GML....28..239S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008GML....28..239S"><span>Contrasting mercury and manganese deposition in a mangrove-dominated estuary (Guaratuba Bay, Brazil)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sanders, C. J.; Santos, I. R.; Silva-Filho, E. V.; Patchineelam, S. R.</p> <p>2008-08-01</p> <p>Sediment cores were taken at seven sites along the mangrove-bound Guaratuba Bay estuary (southern Brazil), with the purpose of assessing conditions controlling Hg deposition along a horizontal estuarine sediment gradient. The data suggest contrasting depositional patterns for Hg and Mn in this relatively pristine setting. Total Hg contents of bulk sediments ranged from 12 to 36 ng/g along the estuary, the highest values being found in muddier organic-rich sediments of the upper estuary (the corresponding mud gradient is 12 to 42 wt.%, and the organic matter gradient 4 to 10 wt.%). Thus, the deposition of fine sediments relatively enriched in mercury occurs primarily in closer proximity to the freshwater source. The data also indicate a reverse gradient in reactive Mn contents, ranging from 29 to 81 μg/g, and increasing seaward. This implies that reactive Mn is mobilized from fine-grained reducing mangrove forest sediments in the upper estuary, and deposited downstream in sandier, oxygen-rich nearshore sediments. These results suggest that mangrove-surrounded estuaries may act as barriers to mercury transport to coastal waters, but as a source of manganese. The present findings also imply that reactive Mn may be used as an indication of Hg depositional patterns in other similar coastal sedimentary settings.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70017346','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70017346"><span>Relationship of geological and geothermal field properties: Midcontinent area, USA, an example</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Forster, A.; Merriam, D.F.; Brower, J.C.</p> <p>1993-01-01</p> <p>Quantitative approaches to data analysis in the last decade have become important in basin modeling and mineral-resource estimation. The interrelation of geological, geophysical, geochemical, and geohydrological variables is important in adjusting a model to a real-world situation. Revealing the interdependences of variables can contribute in understanding the processes interacting in sedimentary basins. It is reasonably simple to compare spatial data of the same type but more difficult if different properties are involved. Statistical techniques, such as cluster analysis or principal components analysis, or some algebraic approaches can be used to ascertain the relations of standardized spatial data. In this example, structural configuration on five different stratigraphic horizons, one total sediment thickness map, and four maps of geothermal data were copared. As expected, the structural maps are highly related because all had undergone about the same deformation with differing degrees of intensity. The temperature gradients derived (1) from shallow borehole logging measurements under equilibrium conditions with the surrounding rock, and (2) from non-equilibrium bottom-hole temperatures (BHT) from deeper depths are mainly independent of each other. This was expected and confirmed also for the two temperature maps at 1000 ft which were constructed using both types of gradient values. Thus, it is evident that the use of a 2-point (BHT and surface temperature) straightline calculation of a mean temperature gradient gives different information about the geothermal regime than using gradients from temperatures logged under equilibrium conditions. Nevertheless, it is useful to determine to what a degree the larger dataset of nonequilibrium temperatures could reflect quantitative relationships to geologic conditions. Comparing all maps of geothermal information vs. the structural and the sediment thickness maps, it was determined that all correlations are moderately negative or slightly positive. These results are clearly shown by the cluster analysis and the principal components. Considering a close relationship between temperature and thermal conductivity of the sediments as observed for most of the Midcontinent area and relatively homogeneous heat-flow density conditions for the study area these results support the following assumptions: (1) undifferentiated geothermal gradients, computed from temperatures of different depth intervals and differing sediment properties, cannot contribute to an improved understanding of the temperature structure and its controls within the sedimentary cover, and (2) the quantitative approach of revealing such relations needs refined datasets of temperature information valid for the different depth levels or stratigraphic units. ?? 1993 International Association for Mathematical Geology.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16958910','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16958910"><span>Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Fry, John C; Webster, Gordon; Cragg, Barry A; Weightman, Andrew J; Parkes, R John</p> <p>2006-10-01</p> <p>The aim of this work was to relate depth profiles of prokaryotic community composition with geochemical processes in the deep subseafloor biosphere at two shallow-water sites on the Peru Margin in the Pacific Ocean (ODP Leg 201, sites 1228 and 1229). Principal component analysis of denaturing gradient gel electrophoresis banding patterns of deep-sediment Bacteria, Archaea, Euryarchaeota and the novel candidate division JS1, followed by multiple regression, showed strong relationships with prokaryotic activity and geochemistry (R(2)=55-100%). Further correlation analysis, at one site, between the principal components from the community composition profiles for Bacteria and 12 other variables quantitatively confirmed their relationship with activity and geochemistry, which had previously only been implied. Comparison with previously published cell counts enumerated by fluorescent in situ hybridization with rRNA-targeted probes confirmed that these denaturing gradient gel electrophoresis profiles described an active prokaryotic community.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012CG.....43...73K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012CG.....43...73K"><span>River suspended sediment estimation by climatic variables implication: Comparative study among soft computing techniques</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kisi, Ozgur; Shiri, Jalal</p> <p>2012-06-01</p> <p>Estimating sediment volume carried by a river is an important issue in water resources engineering. This paper compares the accuracy of three different soft computing methods, Artificial Neural Networks (ANNs), Adaptive Neuro-Fuzzy Inference System (ANFIS), and Gene Expression Programming (GEP), in estimating daily suspended sediment concentration on rivers by using hydro-meteorological data. The daily rainfall, streamflow and suspended sediment concentration data from Eel River near Dos Rios, at California, USA are used as a case study. The comparison results indicate that the GEP model performs better than the other models in daily suspended sediment concentration estimation for the particular data sets used in this study. Levenberg-Marquardt, conjugate gradient and gradient descent training algorithms were used for the ANN models. Out of three algorithms, the Conjugate gradient algorithm was found to be better than the others.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/6921330','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/6921330"><span></span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Buddemeier, R.W.; Oberdorfer, J.A.</p> <p></p> <p>A wide variety of forces can produce head gradients that drive the flow and advective mixing of internal coral reef pore waters. Oscillatory gradients that produce mixing result from wave and tide action. Sustained gradients result from wave and tide-induced setup and ponding, from currents impinging on the reef structure, from groundwater heads, and from density differenced (temperature or salinity gradients). These gradients and the permeabilities and porosities of reef sediments are such that most macropore environments are dominated by advection rather than diffusion. The various driving forces must be analyzed to determine the individual and combined magnitudes of theirmore » effects on a specific reef pore-water system. Pore-water movement controls sediment diagenesis, the exchange of nutrients between sediments and benthos, and coastal/island groundwater resources. Because of the complexity of forcing functions, their interactions with specific local reef environments, experimental studies require careful incorporation of these considerations into their design and interpretation. 8 refs., 3 figs., 1 tab.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70038295','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70038295"><span>Use of vertical temperature gradients for prediction of tidal flat sediment characteristics</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Miselis, Jennifer L.; Holland, K. Todd; Reed, Allen H.; Abelev, Andrei</p> <p>2012-01-01</p> <p>Sediment characteristics largely govern tidal flat morphologic evolution; however, conventional methods of investigating spatial variability in lithology on tidal flats are difficult to employ in these highly dynamic regions. In response, a series of laboratory experiments was designed to investigate the use of temperature diffusion toward sediment characterization. A vertical thermistor array was used to quantify temperature gradients in simulated tidal flat sediments of varying compositions. Thermal conductivity estimates derived from these arrays were similar to measurements from a standard heated needle probe, which substantiates the thermistor methodology. While the thermal diffusivities of dry homogeneous sediments were similar, diffusivities for saturated homogeneous sediments ranged approximately one order of magnitude. The thermal diffusivity of saturated sand was five times the thermal diffusivity of saturated kaolin and more than eight times the thermal diffusivity of saturated bentonite. This suggests that vertical temperature gradients can be used for distinguishing homogeneous saturated sands from homogeneous saturated clays and perhaps even between homogeneous saturated clay types. However, experiments with more realistic tidal flat mixtures were less discriminating. Relationships between thermal diffusivity and percent fines for saturated mixtures varied depending upon clay composition, indicating that clay hydration and/or water content controls thermal gradients. Furthermore, existing models for the bulk conductivity of sediment mixtures were improved only through the use of calibrated estimates of homogeneous end-member conductivity and water content values. Our findings suggest that remotely sensed observations of water content and thermal diffusivity could only be used to qualitatively estimate tidal flat sediment characteristics.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4399439','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4399439"><span>Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Webster, Gordon; O'Sullivan, Louise A.; Meng, Yiyu; Williams, Angharad S.; Sass, Andrea M.; Watkins, Andrew J.; Parkes, R. John; Weightman, Andrew J.</p> <p>2014-01-01</p> <p>Archaea are widespread in marine sediments, but their occurrence and relationship with natural salinity gradients in estuarine sediments is not well understood. This study investigated the abundance and diversity of Archaea in sediments at three sites [Brightlingsea (BR), Alresford (AR) and Hythe (HY)] along the Colne Estuary, using quantitative real-time PCR (qPCR) of 16S rRNA genes, DNA hybridization, Archaea 16S rRNA and mcrA gene phylogenetic analyses. Total archaeal 16S rRNA abundance in sediments were higher in the low-salinity brackish sediments from HY (2–8 × 107 16S rRNA gene copies cm−3) than the high-salinity marine sites from BR and AR (2 × 104–2 × 107 and 4 × 106–2 × 107 16S rRNA gene copies cm−3, respectively), although as a proportion of the total prokaryotes Archaea were higher at BR than at AR or HY. Phylogenetic analysis showed that members of the ‘Bathyarchaeota’ (MCG), Thaumarchaeota and methanogenic Euryarchaeota were the dominant groups of Archaea. The composition of Thaumarchaeota varied with salinity, as only ‘marine’ group I.1a was present in marine sediments (BR). Methanogen 16S rRNA genes from low-salinity sediments at HY were dominated by acetotrophic Methanosaeta and putatively hydrogentrophic Methanomicrobiales, whereas the marine site (BR) was dominated by mcrA genes belonging to methylotrophic Methanococcoides, versatile Methanosarcina and methanotrophic ANME-2a. Overall, the results indicate that salinity and associated factors play a role in controlling diversity and distribution of Archaea in estuarine sediments. PMID:25764553</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=19880023745&hterms=cell+separation&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D10%26Ntt%3Dcell%2Bseparation','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=19880023745&hterms=cell+separation&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D10%26Ntt%3Dcell%2Bseparation"><span>Separation of cells from the rat anterior pituitary gland</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Hymer, Wesley C.; Hatfield, J. Michael</p> <p>1983-01-01</p> <p>Various techniques for separating the hormone-producing cell types from the rat anterior pituitary gland are examined. The purity, viability, and responsiveness of the separated cells depend on the physiological state of the donor, the tissue dissociation procedures, the staining technique used for identification of cell type, and the cell separation technique. The chamber-gradient setup and operation, the characteristics of the gradient materials, and the separated cell analysis of velocity sedimentation techniques (in particular Staput and Celsep) are described. Consideration is given to the various types of materials used in density gradient centrifugation and the operation of a gradient generating device. The use of electrophoresis to separate rat pituitary cells is discussed.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29241136','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29241136"><span>Submillimeter-scale heterogeneity of labile phosphorus in sediments characterized by diffusive gradients in thin films and spatial analysis.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Meng, Yuting; Ding, Shiming; Gong, Mengdan; Chen, Musong; Wang, Yan; Fan, Xianfang; Shi, Lei; Zhang, Chaosheng</p> <p>2018-03-01</p> <p>Sediments have a heterogeneous distribution of labile redox-sensitive elements due to a drastic downward transition from oxic to anoxic condition as a result of organic matter degradation. Characterization of the heterogeneous nature of sediments is vital for understanding of small-scale biogeochemical processes. However, there are limited reports on the related specialized methodology. In this study, the monthly distributions of labile phosphorus (P), a redox-sensitive limiting nutrient, were measured in the eutrophic Lake Taihu by Zr-oxide diffusive gradients in thin films (Zr-oxide DGT) on a two-dimensional (2D) submillimeter level. Geographical information system (GIS) techniques were used to visualize the labile P distribution at such a micro-scale, showing that the DGT-labile P was low in winter and high in summer. Spatial analysis methods, including semivariogram and Moran's I, were used to quantify the spatial variation of DGT-labile P. The distribution of DGT-labile P had clear submillimeter-scale spatial patterns with significant spatial autocorrelation during the whole year and displayed seasonal changes. High values of labile P with strong spatial variation were observed in summer, while low values of labile P with relatively uniform spatial patterns were detected in winter, demonstrating the strong influences of temperature on the mobility and spatial distribution of P in sediment profiles. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70024483','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70024483"><span>Effects of tidal current phase at the junction of two straits</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Warner, J.; Schoellhamer, D.; Burau, J.; Schladow, G.</p> <p>2002-01-01</p> <p>Estuaries typically have a monotonic increase in salinity from freshwater at the head of the estuary to ocean water at the mouth, creating a consistent direction for the longitudinal baroclinic pressure gradient. However, Mare Island Strait in San Francisco Bay has a local salinity minimum created by the phasing of the currents at the junction of Mare Island and Carquinez Straits. The salinity minimum creates converging baroclinic pressure gradients in Mare Island Strait. Equipment was deployed at four stations in the straits for 6 months from September 1997 to March 1998 to measure tidal variability of velocity, conductivity, temperature, depth, and suspended sediment concentration. Analysis of the measured time series shows that on a tidal time scale in Mare Island Strait, the landward and seaward baroclinic pressure gradients in the local salinity minimum interact with the barotropic gradient, creating regions of enhanced shear in the water column during the flood and reduced shear during the ebb. On a tidally averaged time scale, baroclinic pressure gradients converge on the tidally averaged salinity minimum and drive a converging near-bed and diverging surface current circulation pattern, forming a "baroclinic convergence zone" in Mare Island Strait. Historically large sedimentation rates in this area are attributed to the convergence zone. </p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..1915362L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..1915362L"><span>Carbon isotope dynamics in the water column and surface sediments of marginal seas</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lipka, Marko; Liu, Bo; Schmiedinger, Iris; Böttcher, Michael E.</p> <p>2017-04-01</p> <p>The microbial mineralization of organic matter in marine sediments leads to the accumulation of dissolved inorganic carbon (DIC) and other metabolites into the interstitial waters. Pore water profiles sensitively reflect the zones of dominant biogeochemical processes, net trans-formation rates, and diffusive and advective transport of dissolved species across the sediment-water interface. They are controlled by different factors like sedimentology, bottom water currents and redox conditions, microbial activity, and the availability of electron acceptors/donors. The biogeochemical processes create steep gradients in DIC and its carbon isotope composition. One boundary condition for transport processes in the sediment is defined by the composition of the water column, which is under impact by physical mixing processes (e.g., salinity gradient; sediment-water exchange), biological activity and carbon dioxide exchange at the water-atmosphere interface. We present here the results of detailed biogeochemical investigations of vertical water column and pore water profiles from two brackish marginal seas: the Baltic Sea and the Black Sea. The water column on a transect between the North Sea and the southern Baltic Sea as well within the Black Sea were investigated on three cruises with RV MS Merian (MSM33, MSM50, MSM51). In addition, biogeochemical processes and associated element fluxes across the sediment-water interface were studied in key regions of Baltic Sea and Black Sea using pore water and sediment samples retrieved from sediment cores that were collected with a multi-coring device. Water samples were analyzed for metals, nutrients, and metabolites concentrations as well as stable carbon isotope composition of DIC to allow a modeling of steady-state transformation, volumetric transformation rates and element fluxes. The isotope composition of the dissolved inorganic carbon system shows a gradient between the North and the Baltic Sea, following the salinity during winter time. Element fluxes across the sediment-water interface depend on bottom water redox conditions, sedimentology and organic contents. Advective fluxes induced by sedimentation events, macro zoobenthos and wave action can affect the top sections of the sediment, thereby modifying shallow concentration gradients. By means of non-steady state modelling of pore water profiles we were able to identify the impact of mixing processes and sedimentation events in the oxic part of the Baltic Sea. In the Black Sea, on the other hand, anaerobic processes control the dynamics in DI13C under permanent euxinic conditions. A Keeling plot analysis was performed on pore waters to identify the δ13C of DIC released upon oxidation of DOC or methane. The carbon isotope composition of DIC is found to be a highly sensitive tool for understanding carbon cycling in the water column and sediments. Acknowledgements: The study is supported by BMBF during FONA-SECOS project, DFG (cruises MSM33, MSM50 and MSM51) and Leibniz IOW.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5206410','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5206410"><span>Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p></p> <p>2016-01-01</p> <p>Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased. PMID:28096736</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_1");'>1</a></li> <li class="active"><span>2</span></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_2 --> <div id="page_3" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_1");'>1</a></li> <li><a href="#" onclick='return showDiv("page_2");'>2</a></li> <li class="active"><span>3</span></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="41"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?direntryid=334252','PESTICIDES'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?direntryid=334252"><span>Effects of algal-derived carbon on sediment methane ...</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.epa.gov/pesticides/search.htm">EPA Pesticide Factsheets</a></p> <p></p> <p></p> <p>Nutrient loading is known to have adverse consequences for aquatic ecosystems, particularly in the form of algal blooms that may result. These blooms pose problems for humans and wildlife, including harmful toxin release, aquatic hypoxia and increased costs for water treatment. Another potential disservice resulting from algal blooms is the enhanced production of methane (CH4), a potent greenhouse gas, in aquatic sediments. Laboratory experiments have shown that algal biomass additions to sediment cores increase rates of CH4 production, but it is unclear whether or not this effect occurs at the ecosystem scale. The goal of this research was to explore the link between algal-derived carbon and methane production in the sediment of a eutrophic reservoir located in southwest Ohio, using a sampling design that capitalized on spatial and temporal gradients in autochthonous carbon input to sediments. Specifically, we aimed to determine if the within-reservoir gradient of sediment algal-derived organic matter and sediment CH4 production rates correlate. This was done by retrieving sediment cores from 15 sites within the reservoir along a known gradient of methane emission rates, at two separate time points in 2016: late spring before the sediments had received large amounts of algal input and mid-summer after algal blooms had been prevalent in the reservoir. Potential CH4 production rates, sediment organic matter source, and microbial community composition were charac</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70030829','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70030829"><span>Structure and composition of a watershed-scale sediment information network</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Osterkamp, W.R.; Gray, J.R.; Laronne, J.B.; Martin, J.R.</p> <p>2007-01-01</p> <p>A 'Watershed-Scale Sediment Information Network' (WaSSIN), designed to complement UNESCO's International Sedimentation Initiative, was endorsed as an initial project by the World Association for Sedimentation and Erosion Research. WaSSIN is to address global fluvial-sediment information needs through a network approach based on consistent protocols for the collection, analysis, and storage of fluvial-sediment and ancillary information at smaller spatial scales than those of the International Sedimentation Initiative. As a second step of implementation, it is proposed herein that the WaSSIN have a general structure of two components, (1) monitoring and data acquisition and (2) research. Monitoring is to be conducted in small watersheds, each of which has an established database for discharge of water and suspended sediment and possibly for bed load, bed material, and bed topography. Ideally, documented protocols have been used for collecting, analyzing, storing, and sharing the derivative data. The research component is to continue the collection and interpretation of data, to compare those data among candidate watersheds, and to determine gradients of fluxes and processes among the selected watersheds. To define gradients and evaluate processes, the initial watersheds will have several common attributes. Watersheds of the first group will be: (1) six to ten in number, (2) less than 1000 km2 in area, (3) generally in mid-latitudes of continents, and (4) of semiarid climate. Potential candidate watersheds presently include the Weany Creek Basin, northeastern Australia, the Zhi Fanggou catchment, northern China, the Eshtemoa Watershed, southern Israel, the Metsemotlhaba River Basin, Botswana, the Aiuaba Experimental Basin, Brazil, and the Walnut Gulch Experimental Watershed, southwestern United States.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016Geomo.252...66L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016Geomo.252...66L"><span>Mapping spatial patterns of stream power and channel change along a gravel-bed river in northern Yellowstone</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lea, Devin M.; Legleiter, Carl J.</p> <p>2016-01-01</p> <p>Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing or field surveys. This study sought to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8-km reach. Aerial photographs from 1994 to 2012 and ground-based surveys were used to develop a locational probability map and morphologic sediment budget to assess lateral channel mobility and changes in net sediment flux. A drainage area-to-discharge relationship and DEM developed from LiDAR data were used to obtain the discharge and slope values needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of sediment sources and sinks. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volumetric change in each time increment. Collectively, we refer to these methods as the stream power gradient (SPG) framework. The results of this study were compromised by methodological limitations of the SPG framework and revealed some complications likely to arise when applying this framework to small, wandering, gravel-bed rivers. Correlations between stream power gradients and sediment flux were generally weak, highlighting the inability of relatively simple statistical approaches to link sub-budget cell-scale sediment dynamics to larger-scale driving forces such as stream power gradients. Improving the moderate spatial resolution techniques used in this study and acquiring very-high resolution data from recently developed methods in fluvial remote sensing could help improve understanding of the spatial organization of stream power, sediment transport, and channel change in dynamic natural rivers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMOS12C..04C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMOS12C..04C"><span>Characterization of the Navy Fan Channel-to-Lobe Transition: Geomorphology, Gradient, and Structure Imaged through High-Resolution AUV Bathymetry</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Carvajal, C.; Paull, C. K.; Caress, D. W.; Anderson, K.; Lundsten, E. M.; Gwiazda, R.; Fildani, A.; Dykstra, M.; McGann, M.; Maier, K. L.; Herguera, J. C.</p> <p>2016-12-01</p> <p>Channel to lobe transition zones (CLTZ) are elusive sectors of the seafloor. They record complex interactions between sediment-gravity flows, flow confinement, and gradient that can result in contrasting geomorphologies. If present, structural controls can add additional intricacies. We illustrate such complexities in the Navy Fan CLTZ offshore California/Mexico using AUV-collected high-resolution (1x1x0.25 m) bathymetry and chirp profiles. The AUV bathymetry images the fine scale details of the seafloor, otherwise unresolved in surface-ship-mounted multibeam bathymetry. Three morphological areas standout that in a direction transverse to sediment transport are: 1) An unconfined area with variable but overall steep gradients (0.5o-1.7o), and considerable erosion shown by numerous large scours that truncate underlying strata. These scours are elongate (<500x180 m), deep (<18 m), asymmetric (steeper proximally), and more prominent along steeper gradients; 2) An area of moderate confinement along a smoother, gentler gradient (0.2o-0.5o; 0.9o locally). This area is 8 km long with a channel (WxD: 233x11 m) that transitions basinwards to low confinement (WxD: 1000x4 m); and 3) An area with an escarpment (<25 m high, <19o) and ridge of the San Clemente Fault. We hypothesize that the erosional morphologies of the unconfined areas reflect swifter turbidity currents due to high gradients, which resulted from relief along the San Clemente Fault and probably from differential seafloor aggradation. In the moderate confinement area, the smoother and gentler seafloor may be related to more efficient sediment dispersal able to transfer/deposit sediment to heal structural relief (though not completely) while avoiding significant local aggradation, hence preventing major gradient build up. In the faulted area, the steep and prominent structure reroutes the sediments. The findings of this study have broad application to any seafloor areas with rapid changes of gradient.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1994CSR....14.1191W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1994CSR....14.1191W"><span>Sediment resuspension and bed armoring during high bottom stress events on the northern California inner continental shelf: measurements and predictions</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wiberg, Patricia L.; Drake, David E.; Cacchione, David A.</p> <p>1994-08-01</p> <p>Geoprobe bottom tripods were deployed during the winter of 1990-1991 on the northern California inner continental shelf as part of the STRESS field experiment. Transmissometer measurements of light beam attenuation were made at two levels and current velocity was measured at four levels in the bottom 1.2 m of water. Intervals of high measured bottom wave velocity were generally correlated with times of both high attenuation and high attenuation gradient in the bottom meter of the water column. Measured time series of light attenuation and attenuation gradient are compared to values computed using a modified version of the SMITH [(1977) The sea, Vol. 6, Wiley-Interscience, New York, pp. 539-577] steady wave-current bottom-boundary-layer model. Size-dependent transmissometer calibrations, which show significantly enhanced attenuation with decreasing grain size, are used to convert calculated suspended sediment concentration to light attenuation. The finest fractions of the bed, which are the most easily suspended and attenuate the most light, dominate the computed attenuation signal although they comprise only about 5-7% of the bed sediment. The calculations indicate that adjusting the value of the coefficient γ 0 in the expression for near-bed sediment concentration cannot in itself give both the correct magnitudes of light attenuation and attenuation gradient. To supply the volumes of fine sediment computed to be in suspension during peak events, even with values of γ 0 as low as 5 × 10 -5, requires suspension of particles from unreasonably large depths in the bed. A limit on the depth of sediment availability is proposed as a correction to suspended sediment calculations. With such a limit, reasonable attenuation values are computed with γ 0 ≈ 0.002. The effects of limiting availability and employing a higher γ 0 are to reduce the volume of the finest sediment in suspension and to increase the suspended volumes of the coarser fractions. As a consequence, the average size and settling velocity of suspended sediment increases as bottom shear stress increases, with accompanying increases in near-bed concentration gradients. Higher concentration gradients produce larger stratification effects, particularly near the top of the wave boundary layer at times when wave shear velocities are high and current shear velocities are low. These are the conditions under which maximum attenuation gradients are observed.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70017575','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70017575"><span>Sediment resuspension and bed armoring during high bottom stress events on the northern California inner continental shelf: measurements and predictions</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Wiberg, P.L.; Drake, D.E.; Cacchione, D.A.</p> <p>1994-01-01</p> <p>Geoprobe bottom tripods were deployed during the winter of 1990-1991 on the northern California inner continental shelf as part of the STRESS field experiment. Transmissometer measurements of light beam attenuation were made at two levels and current velocity was measured at four levels in the bottom 1.2 m of water. Intervals of high measured bottom wave velocity were generally correlated with times of both high attenuation and high attenuation gradient in the bottom meter of the water column. Measured time series of light attenuation and attenuation gradient are compared to values computed using a modified version of the Smith [(1977) The sea, Vol. 6, Wiley-Interscience, New York, pp. 539-577] steady wave-current bottom-boundary-layer model. Size-dependent transmissometer calibrations, which show significantly enhanced attenuation with decreasing grain size, are used to convert calculated suspended sediment concentration to light attenuation. The finest fractions of the bed, which are the most easily suspended and attenuate the most light, dominate the computed attenuation signal although they comprise only about 5-7% of the bed sediment. The calculations indicate that adjusting the value of the coefficient ??0 in the expression for near-bed sediment concentration cannot in itself give both the correct magnitudes of light attenuation and attenuation gradient. To supply the volumes of fine sediment computed to be in suspension during peak events, even with values of ??0 as low as 5 ?? 10-5, requires suspension of particles from unreasonably large depths in the bed. A limit on the depth of sediment availability is proposed as a correction to suspended sediment calculations. With such a limit, reasonable attenuation values are computed with ??0 ??? 0.002. The effects of limiting availability and employing a higher ??0 are to reduce the volume of the finest sediment in suspension and to increase the suspended volumes of the coarser fractions. As a consequence, the average size and settling velocity of suspended sediment increases as bottom shear stress increases, with accompanying increases in near-bed concentration gradients. Higher concentration gradients produce larger stratification effects, particularly near the top of the wave boundary layer at times when wave shear velocities are high and current shear velocities are low. These are the conditions under which maximum attenuation gradients are observed. ?? 1994.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFMEP33D..08P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFMEP33D..08P"><span>Deltas as Ecomorphodynamic Systems: Effects of Vegetation Gradients on Sediment Trapping and Channel Dynamics</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Piliouras, A.; Kim, W.; Goggin, H.</p> <p>2014-12-01</p> <p>Understanding the feedbacks between water, sediment, and vegetation in deltas is an important part of understanding deltas as ecomorphodynamic systems. We conducted a set of laboratory experiments using alfalfa (Medicago sativa) as a proxy for delta vegetation to determine (1) the effects of plants on delta growth and channel dynamics and (2) the influence of fine material on delta evolution. Vegetated experiments were compared to a control run without plants to isolate the effects of vegetation, and experiments with fine sediment were compared to a set of similar experiments with only sand. We found that alfalfa increased sediment trapping on the delta topset, and that the plants were especially effective at retaining fine material. Compared to the control run, the vegetated experiments showed an increased retention of fine sediment on the floodplain that resulted in increased delta relief and stronger pulses of shoreline progradation when channel avulsion and migration occurred. In other words, a higher amount of sediment storage with the addition of vegetation corresponded to a higher amount of sediment excavation during channelization events. In natural systems, dense bank vegetation is typically expected to help confine flow. We seeded our delta uniformly, which eliminated typical vegetation density gradients from riverbank to island center and therefore diminished the gradient in overbank sedimentation that best confines channels by creating levees. Dense clusters of alfalfa throughout the interior of the floodplain and delta islands were therefore able to induce flow splitting, where channels diverged around a stand of plants. This created several smaller channels that were then able to more widely distribute sediment at the delta front compared to unvegetated experiments. We conclude that plants are efficient sediment trappers that change the rate and amount of sediment storage in the delta topset, and that gradients in vegetation density are an important factor in determining how channel behavior may change.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25764553','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25764553"><span>Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Webster, Gordon; O'Sullivan, Louise A; Meng, Yiyu; Williams, Angharad S; Sass, Andrea M; Watkins, Andrew J; Parkes, R John; Weightman, Andrew J</p> <p>2015-02-01</p> <p>Archaea are widespread in marine sediments, but their occurrence and relationship with natural salinity gradients in estuarine sediments is not well understood. This study investigated the abundance and diversity of Archaea in sediments at three sites [Brightlingsea (BR), Alresford (AR) and Hythe (HY)] along the Colne Estuary, using quantitative real-time PCR (qPCR) of 16S rRNA genes, DNA hybridization, Archaea 16S rRNA and mcrA gene phylogenetic analyses. Total archaeal 16S rRNA abundance in sediments were higher in the low-salinity brackish sediments from HY (2-8 × 10(7) 16S rRNA gene copies cm(-3)) than the high-salinity marine sites from BR and AR (2 × 10(4)-2 × 10(7) and 4 × 10(6)-2 × 10(7) 16S rRNA gene copies cm(-3), respectively), although as a proportion of the total prokaryotes Archaea were higher at BR than at AR or HY. Phylogenetic analysis showed that members of the 'Bathyarchaeota' (MCG), Thaumarchaeota and methanogenic Euryarchaeota were the dominant groups of Archaea. The composition of Thaumarchaeota varied with salinity, as only 'marine' group I.1a was present in marine sediments (BR). Methanogen 16S rRNA genes from low-salinity sediments at HY were dominated by acetotrophic Methanosaeta and putatively hydrogentrophic Methanomicrobiales, whereas the marine site (BR) was dominated by mcrA genes belonging to methylotrophic Methanococcoides, versatile Methanosarcina and methanotrophic ANME-2a. Overall, the results indicate that salinity and associated factors play a role in controlling diversity and distribution of Archaea in estuarine sediments. © The Author 2014. Published by Oxford University Press on behalf of Federation of European Microbiological Society.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/201244-application-profile-imaging-monitoring-organic-metal-pollution-venice-lagoon','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/201244-application-profile-imaging-monitoring-organic-metal-pollution-venice-lagoon"><span>The application of profile imaging for monitoring organic and metal pollution in the Venice lagoon</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Bona, F.; Maffiotti, A.</p> <p>1995-12-31</p> <p>Since 1993 the technique of Sediment Profile Imaging (SPI) has been applied in monitoring the Venice Lagoon. The purposes of the monitoring were several, ranging from an initial baseline survey of sediment quality, to the control of Ulva rigida proliferation, to sediment quality assessment for dredging and capping activities in restricted areas of the lagoon. Data resulting from each computer image analysis have been summarized in one index which takes into consideration the mutual interactions between the physical and chemical conditions and the benthic community. In this way a spatial and seasonal gradient in the quality Venice Lagoon sediments hasmore » been established and the key roles of the organic enrichment and of the ecosystem hydrodynamics have been confirmed. The underwater camera and image analysis have also been an effective screening tool to address further investigations in those areas of particular concern for sediment contamination. On the basis of the SPI indices a selection of stations has been made in order to sample and perform sediment toxicity tests and chemical analyses to assess contamination levels.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=235946&keyword=fox&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=235946&keyword=fox&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Bioaccumulation of PCBs Across Concentration Gradients in Sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Sediment bioaccumulation tests with <i>Lumbriculus variegatus</i> quantify the relationships between the chemical residues in sediments and benthic invertebrates, and these relationships are expressed as biota-sediment accumulation factors (BSAF). At some field sites, BSAFs decr...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28899339','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28899339"><span>Ciliate diversity and distribution patterns in the sediments of a seamount and adjacent abyssal plains in the tropical Western Pacific Ocean.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhao, Feng; Filker, Sabine; Stoeck, Thorsten; Xu, Kuidong</p> <p>2017-09-12</p> <p>Benthic ciliates and the environmental factors shaping their distribution are far from being completely understood. Likewise, deep-sea systems are amongst the least understood ecosystems on Earth. In this study, using high-throughput DNA sequencing, we investigated the diversity and community composition of benthic ciliates in different sediment layers of a seamount and an adjacent abyssal plain in the tropical Western Pacific Ocean with water depths ranging between 813 m and 4566 m. Statistical analyses were used to assess shifts in ciliate communities across vertical sediment gradients and water depth. Nine out of 12 ciliate classes were detected in the different sediment samples, with Litostomatea accounting for the most diverse group, followed by Plagiopylea and Oligohymenophorea. The novelty of ciliate genetic diversity was extremely high, with a mean similarity of 93.25% to previously described sequences. On a sediment depth gradient, ciliate community structure was more similar within the upper sediment layers (0-1 and 9-10 cm) compared to the lower sediment layers (19-20 and 29-30 cm) at each site. Some unknown ciliate taxa which were absent from the surface sediments were found in deeper sediments layers. On a water depth gradient, the proportion of unique OTUs was between 42.2% and 54.3%, and that of OTUs shared by all sites around 14%. However, alpha diversity of the different ciliate communities was relatively stable in the surface layers along the water depth gradient, and about 78% of the ciliate OTUs retrieved from the surface layer of the shallowest site were shared with the surface layers of sites deeper than 3800 m. Correlation analyses did not reveal any significant effects of measured environmental factors on ciliate community composition and structure. We revealed an obvious variation in ciliate community along a sediment depth gradient in the seamount and the adjacent abyssal plain and showed that water depth is a less important factor shaping ciliate distribution in deep-sea sediments unlike observed for benthic ciliates in shallow seafloors. Additionally, an extremely high genetic novelty of ciliate diversity was found in these habitats, which points to a hot spot for the discovery of new ciliate species.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29516427','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29516427"><span>Coupling loss characteristics of runoff-sediment-adsorbed and dissolved nitrogen and phosphorus on bare loess slope.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wu, Lei; Qiao, Shanshan; Peng, Mengling; Ma, Xiaoyi</p> <p>2018-05-01</p> <p>Soil and nutrient loss is a common natural phenomenon but it exhibits unclear understanding especially on bare loess soil with variable rainfall intensity and slope gradient, which makes it difficult to design control measures for agricultural diffuse pollution. We employ 30 artificial simulated rainfalls (six rainfall intensities and five slope gradients) to quantify the coupling loss correlation of runoff-sediment-adsorbed and dissolved nitrogen and phosphorus on bare loess slope. Here, we show that effects of rainfall intensity on runoff yield was stronger than slope gradient with prolongation of rainfall duration, and the effect of slope gradient on runoff yield reduced gradually with increased rainfall intensity. But the magnitude of initial sediment yield increased significantly from an average value of 6.98 g at 5° to 36.08 g at 25° with increased slope gradient. The main factor of sediment yield would be changed alternately with the dual increase of slope gradient and rainfall intensity. Dissolved total nitrogen (TN) and dissolved total phosphorus (TP) concentrations both showed significant fluctuations with rainfall intensity and slope gradient, and dissolved TP concentration was far less than dissolved TN. Under the double influences of rainfall intensity and slope gradient, adsorbed TN concentration accounted for 7-82% of TN loss concentration with an average of 58.6% which was the main loss form of soil nitrogen, adsorbed TP concentration accounted for 91.8-98.7% of TP loss concentration with an average of 96.6% which was also the predominant loss pathway of soil phosphorus. Nitrate nitrogen (NO 3 - -N) accounted for 14.59-73.92% of dissolved TN loss, and ammonia nitrogen (NH 4 + -N) accounted for 1.48-18.03%. NO 3 - -N was the main loss pattern of TN in runoff. Correlation between dissolved TN, runoff yield, and rainfall intensity was obvious, and a significant correlation was also found between adsorbed TP, sediment yield, and slope gradient. Our results provide the underlying insights needed to guide the control of nitrogen and phosphorus loss on loess hills.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMEP21B0881M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMEP21B0881M"><span>Natural and Anthropogenic Causes of Accelerated Sediment Accumulation Rates in Nehalem Bay Salt Marshes, Oregon</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Molino, G. D.; Wheatcroft, R. A.; Peck, E. K.; Brophy, L.</p> <p>2016-12-01</p> <p>Vertical sediment accretion in estuarine salt marshes occurs as sediments settle out of the water column and onto marsh soils during periods of tidal inundation - thus accretion is influenced by both relative sea level rise (RSLR) and sediment flux to the estuary. Oregon estuaries are understudied compared to their East and Gulf Coast counterparts, but provide a unique opportunity to disentangle these effects. A broader study in three Oregon estuaries (Peck et al., this session) indicates RSLR as the dominant factor controlling sedimentation rates. Working in Nehalem Bay (northern Oregon coast), replicate sediment cores were taken along several transects across an elevation gradient for analysis of sediment and carbon accumulation using CT scans, gamma detection of Pb-210, X-Ray Fluorescence (XRF) and Loss-on-Ignition (LOI). Preliminary results indicate sediment accumulation rates over the past century are higher than rates seen in other comparable Oregon salt marshes; this is consistent with past studies and preliminary analysis of remote sensing data that show significant horizontal expansion of Nehalem marshes. A number of possible causes for the high sediment accumulation rates - hydroclimate of Nehalem River, extensive timber harvesting, forest fires such as the so-called Tillamook Burns, and diking of adjacent marshes - are being explored.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21222030','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21222030"><span>Bacterial community structure analysis of sediment in the Sagami River, Japan using a rapid approach based on two-dimensional DNA gel electrophoresis mapping with selective primer pairs.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Liu, Guo-hua; Rajendran, Narasimmalu; Amemiya, Takashi; Itoh, Kiminori</p> <p>2011-11-01</p> <p>A rapid approach based on two-dimensional DNA gel electrophroesis (2-DGE) mapping with selective primer pairs was employed to analyze bacterial community structure in sediments from upstream, midstream and downstream of Sagami River in Japan. The 2-DGE maps indicated that Alpha- and Delta-proteobacteria were major bacterial populations in the upstream and midstream sediments. Further bacterial community structure analysis showed that richness proportion of Alpha- and Delta-proteobacterial groups reflected a trend toward decreasing from the upstream to downstream sediments. The biomass proportion of bacterial populations in the midstream sediment showed a significantly difference from that in the other sediments, suggesting that there may be an environmental pressure on the midstream bacterial community. Lorenz curves, together with Gini coefficients were successfully applied to the 2-DGE mapping data for resolving evenness of bacterial populations, and showed that the plotted curve from high-resolution 2-DGE mapping became less linear and more an exponential function than that of the 1-DGE methods such as chain length analysis and denaturing gradient gel electrophoresis, suggesting that the 2-DGE mapping may achieve a more detailed evaluation of bacterial community. In conclusion, the 2-DGE mapping combined with the selective primer pairs enables bacterial community structure analysis in river sediment and thus it can also monitor sediment pollution based on the change of bacterial community structure.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/412833','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/412833"><span>Effects of detergents on ribosomal precursor subunits of Bacillus megaterium.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Body, A; Brownstein, B H</p> <p>1978-01-01</p> <p>Cell extracts prepared by osmotic lysis of protoplasts were analyzed by sucrose gradient sedimentation. In the absence of detergents, ribosomal precursor particles were found in a gradient fraction which sedimented faster than mature 50S subunits and in two other fractions coincident with mature 50S and 30S ribosomal subunits. Phospholipid, an indicator of membrane, was shown to be associated with only the fastest-sedimenting ribosomal precursor particle fraction. After the extracts were treated with detergents, all phospholipid was found at the top of the gradients. Brij 58, Triton X-100, and Nonidet P-40 did not cause a change in the sedimentation values of precursors; however, the detergents deoxycholate or LOC (Amway Corp.) disrupted the fastest-sedimenting precursor and converted the ribosomal precursor subunits which sedimented at the 50S and 30S positions to five different classes of more slowly sedimenting particles. Earlier reports on the in vivo assembly of ribosomal subunits have shown that several stages of ribosomal precursor subunits exist, and, in the presence of the detergents deoxycholate and LOC, which had been used to prepare cell extracts, the precursors sedimented more slowly. Our data are consistent with the hypothesis that those detergents selectively modify the structure of ribosomal precursors and lend further support to the hypothesis that the in vivo ribosomal precursor subunits have 50S and 30S sedimentation values. In addition, these data support the idea that the ribosomal precursor particles found in the fast-sedimenting fraction may constitute a unique precursor fraction.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=222001','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=222001"><span>Effects of Detergents on Ribosomal Precursor Subunits of Bacillus megaterium</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Body, Barbara A.; Brownstein, Bernard H.</p> <p>1978-01-01</p> <p>Cell extracts prepared by osmotic lysis of protoplasts were analyzed by sucrose gradient sedimentation. In the absence of detergents, ribosomal precursor particles were found in a gradient fraction which sedimented faster than mature 50S subunits and in two other fractions coincident with mature 50S and 30S ribosomal subunits. Phospholipid, an indicator of membrane, was shown to be associated with only the fastest-sedimenting ribosomal precursor particle fraction. After the extracts were treated with detergents, all phospholipid was found at the top of the gradients. Brij 58, Triton X-100, and Nonidet P-40 did not cause a change in the sedimentation values of precursors; however, the detergents deoxycholate or LOC (Amway Corp.) disrupted the fastest-sedimenting precursor and converted the ribosomal precursor subunits which sedimented at the 50S and 30S positions to five different classes of more slowly sedimenting particles. Earlier reports on the in vivo assembly of ribosomal subunits have shown that several stages of ribosomal precursor subunits exist, and, in the presence of the detergents deoxycholate and LOC, which had been used to prepare cell extracts, the precursors sedimented more slowly. Our data are consistent with the hypothesis that those detergents selectively modify the structure of ribosomal precursors and lend further support to the hypothesis that the in vivo ribosomal precursor subunits have 50S and 30S sedimentation values. In addition, these data support the idea that the ribosomal precursor particles found in the fast-sedimenting fraction may constitute a unique precursor fraction. PMID:412833</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016Geomo.262...91M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016Geomo.262...91M"><span>Reach-scale characterization of large woody debris in a low-gradient, Midwestern U.S.A. river system</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Martin, Derek J.; Pavlowsky, Robert T.; Harden, Carol P.</p> <p>2016-06-01</p> <p>Addition of large woody debris (LWD) to rivers has increasingly become a popular stream restoration strategy, particularly in river systems of the Midwestern United States. However, our knowledge of LWD dynamics is mostly limited to high gradient montane river systems, or coastal river systems. The LWD-related management of low-gradient, Midwestern river systems is thus largely based on higher gradient analogs of LWD dynamics. This research characterizes fluvial wood loads and investigates the relationships between fluvial wood, channel morphology, and sediment deposition in a relatively low-gradient, semiconfined, alluvial river. The LWD and channel morphology were surveyed at nine reaches along the Big River in southeastern Missouri to investigate those relationships in comparison to other regions. Wood loads in the Big River are low (3-114 m3/100 m) relative to those of higher gradient river systems of the Pacific Northwest, but high relative to lower-gradient river systems of the Eastern United States. Wood characteristics such as size and orientation suggest that the dominant LWD recruitment mechanism in the Big River is bank erosion. Also, ratios of wood geometry to channel geometry show that the Big River maintains a relatively high wood transport capacity for most of its length. Although LWD creates sites for sediment storage, the overall impact on reach-scale sediment storage in the Big River is low (< 4.2% of total in-channel storage). However, wood loads, and thus opportunities for sediment storage, have the potential to grow in the future as Midwestern riparian forests mature. This study represents the first of its kind within this particular type of river system and within this region and thus serves as a basis for understanding fluvial wood dynamics in low-gradient river systems of the Midwestern United States.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19.5478M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19.5478M"><span>Deep sea sedimentation processes and geomorphology: Northwest Atlantic continental margin</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mosher, David; Campbell, Calvin; Gardner, Jim; Chaytor, Jason; Piper, David; Rebesco, Michele</p> <p>2017-04-01</p> <p>Deep-sea sedimentation processes impart a fundamental control on the morphology of the western North Atlantic continental margin from Blake Spur to Hudson Strait. This fact is illustrated by the variable patterns of cross-margin gradients that are based on extensive new multibeam echo-sounder data informed by subbottom profiler and seismic reflection data. Erosion by off-shelf sediment transport in turbidity currents creates gullies, canyons and channels and a steep upper slope. Amalgamation of these conduits produces singular channels and turbidite fan complexes on the lower slope, flattening slope-profile gradients. The effect is an exponentially decaying "graded" slope profile. Comparatively, sediment mass failure produces steeper upper slopes due to head scarp development and a wedging architecture to the lower slope as deposits thin in the downslope direction. This process results in either a "stepped" slope, and/or a significant downslope gradient change where MTDs pinch out. Large drift deposits created by geostrophic currents are developed all along the margin. Blake Ridge, Sackville Spur, and Hamilton Spur are large detached drifts on disparate parts of the margin. They form a linear "above grade" profile along their crests from the shelf to abyssal plain. Deeper portions of the US continental margin are dominated by the Chesapeake Drift and Hatteras Outer Ridge; both plastered elongate mounded drifts. Farther north, particularly on the Grand Banks margin, are plastered and separated drifts. These drifts form "stepped" slope profiles, where they onlap the margin. Trough-mouth fan complexes become more common along the margin with increasing latitude. Sediment deposition and retention, particularly those dominated by glacigenic debris flows, characterize these segments producing an "above grade" slope profile. Understanding these geomorphological consequences of deep sea sedimentation processes is important to extended continental shelf mapping in which gradients and gradient change is a critical metric.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/9712899','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/9712899"><span>Assembly of the epithelial Na+ channel evaluated using sucrose gradient sedimentation analysis.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Cheng, C; Prince, L S; Snyder, P M; Welsh, M J</p> <p>1998-08-28</p> <p>Three subunits, alpha, beta, and gamma, contribute to the formation of the epithelial Na+ channel. To investigate the oligomeric assembly of the channel complex, we used sucrose gradient sedimentation analysis to determine the sedimentation properties of individual subunits and heteromultimers comprised of multiple subunits. When the alpha subunit was expressed alone, it first formed an oligomeric complex with a sedimentation coefficient of 11 S, and then generated a higher order multimer of 25 S. In contrast, individual beta and gamma subunits predominately assembled into 11 S complexes. We obtained similar results with expression in cells and in vitro. When we co-expressed beta with alpha or with alpha plus gamma, the beta subunit assembled into a 25 S complex. Glycosylation of the alpha subunit was not required for assembly into a 25 S complex. We found that the alpha subunit formed intra-chain disulfide bonds. Although such bonds were not required to generate an oligomeric complex, under nonreducing conditions the alpha subunit formed a complex that migrated more homogeneously at 25 S. This suggests that intra-chain disulfide bonds may stabilize the complex. These data suggest that the epithelial Na+ channel subunits form high order oligomeric complexes and that the alpha subunit contains the information that facilitates such formation. Interestingly, the ability of the alpha, but not the beta or gamma, subunit to assemble into a 25 S homomeric complex correlates with the ability of these subunits to generate functional channels when expressed alone.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFM.B23I..04K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFM.B23I..04K"><span>Biogeochemistry of a submerged groundwater seep ecosystem in Lake Huron near karst region of Alpena, MI</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kinsman-Costello, L. E.; Dick, G.; Sheik, C.; Burton, G. A.; Sheldon, N. D.</p> <p>2015-12-01</p> <p>Submerged groundwater seeps in Lake Huron establish ecosystems with distinctive geochemical conditions. In the Middle Island Sinkhole (MIS), a 23-m deep seep, groundwater seepage establishes low O2 (< 4 mg L-1), high sulfate (6 mM) conditions, in which a purple cyanobacteria-dominated mat thrives. The mat is capable of anoxygenic photosynthesis, oxygenic photosynthesis, and chemosynthesis. Within the top 3 cm of the mat-water interface, hydrogen sulfide concentrations increase to 1-7 mM. Little is known about the structure and function of microbes within organic-rich, high-sulfide sediments beneath the mat. Using pore water and sediment geochemical characterization along with microbial community analysis, we elucidated relationships between microbial community structure and ecosystem function along vertical gradients. In sediment pore waters, biologically reactive solutes (SO42-, NH4+, PO43-, and CH4) displayed steep vertical gradients, reflecting biological and geochemical functioning. In contrast, more conservative ions (Ca+2, Mg+2, Na+, and Cl-), did not change significantly with depth in MIS sediments, indicating groundwater influence in the sediment profile. MIS sediments contained more organic matter than typical Lake Huron sediments, and were generally higher in nutrients, metals, and sulfur (acid volatile sulfide). Using the Illumina MiSeq platform we detected 14,127 unique operational taxonomic units across sediment and surface mat samples. Microbial community composition in the MIS was distinctly different from non-groundwater affected areas at similar depth nearby in Lake Huron (ANOSIM, R= 0.74, p=0.002). MIS sediment communities were more diverse that MIS surface mat communities and changed with depth into sediments. MIS sediment community composition was related to several geochemical variables, including organic matter and multiple indicators of phosphorus availability. Elucidating the structure and function of microbial consortia in MIS, a highly unique and environmentally vulnerable ecosystem, provides a rare opportunity to understand relationships between microbial species and their environment and may provide insights into the evolution of life under ancient low-oxygen, high-sulfur conditions.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_1");'>1</a></li> <li><a href="#" onclick='return showDiv("page_2");'>2</a></li> <li class="active"><span>3</span></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_3 --> <div id="page_4" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_2");'>2</a></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li class="active"><span>4</span></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="61"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2137720','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2137720"><span>THE SEDIMENTATION PROPERTIES OF THE SKIN-SENSITIZING ANTIBODIES OF RAGWEED-SENSITIVE PATIENTS</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Andersen, Burton R.; Vannier, Wilton E.</p> <p>1964-01-01</p> <p>The sedimentation coefficients of the skin-sensitizing antibodies to ragweed were evaluated by the moving partition cell method and the sucrose density gradient method. The most reliable results were obtained by sucrose density gradient ultracentrifugation which showed that the major portion of skin-sensitizing antibodies to ragweed sediment with an average value of 7.7S (7.4 to 7.9S). This is about one S unit faster than γ-globulins (6.8S). The data from the moving partition cell method are in agreement with these results. Our studies failed to demonstrate heterogeneity of the skin-sensitizing antibodies with regard to sedimentation rate. PMID:14194391</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70018798','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70018798"><span>Distributions and fate of chlorinated pesticides, biomarkers and polycyclic aromatic hydrocarbons in sediments along a contamination gradient from a point-source in San Francisco Bay, California</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Pereira, W.E.; Hostettler, F.D.; Rapp, J.B.</p> <p>1996-01-01</p> <p>The distribution and fate of chlorinated pesticides, biomarkers, and polycyclic aromatic hydrocarbons (PAHs) in surficial sediments along a contamination gradient in the Lauritzen Canal and Richmond Harbor in San Francisco Bay was investigated. Compounds were identified and quantified using gas chromatography-ion trap mass spectrometry. Biomarkers and PAHs were derived primarily from weathered petroleum. DDT was reductively dechlorinated under anoxic conditions to DDD and several minor degradation products, DDMU, DDMS, and DDNU. Under aerobic conditions, DDT was dehydrochlorinated to DDE and DBP. Aerobic degradation of DDT was diminished or inhibited in zones of high concentration, and increased significantly in zones of lower concentration: Other chlorinated pesticides identified in sediment included dieldrin and chlordane isomers. Multivariate analysis of the distributions of the DDTs suggested that there are probably two sources of DDD. In addition, DDE and DDMU are probably formed by similar mechanisms, i.e. dehydrochlorination. A steep concentration gradient existed from the Canal to the Outer Richmond Harbor, but higher levels of DDD than those found in the remainder of the Bay indicated that these contaminants are transported on particulates and colloidal organic matter from this source into San Francisco Bay. Chlorinated pesticides and PAHs may pose a potential problem to biota in San Francisco Bay.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70040449','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70040449"><span>Bathymetric controls on sediment transport in the Hudson River estuary: Lateral asymmetry and frontal trapping</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Ralston, David K.; Geyer, W. Rockwell; Warner, John C.</p> <p>2012-01-01</p> <p>Analyses of field observations and numerical model results have identified that sediment transport in the Hudson River estuary is laterally segregated between channel and shoals, features frontal trapping at multiple locations along the estuary, and varies significantly over the spring-neap tidal cycle. Lateral gradients in depth, and therefore baroclinic pressure gradient and stratification, control the lateral distribution of sediment transport. Within the saline estuary, sediment fluxes are strongly landward in the channel and seaward on the shoals. At multiple locations, bottom salinity fronts form at bathymetric transitions in width or depth. Sediment convergences near the fronts create local maxima in suspended-sediment concentration and deposition, providing a general mechanism for creation of secondary estuarine turbidity maxima at bathymetric transitions. The lateral bathymetry also affects the spring-neap cycle of sediment suspension and deposition. In regions with broad, shallow shoals, the shoals are erosional and the channel is depositional during neap tides, with the opposite pattern during spring tides. Narrower, deeper shoals are depositional during neaps and erosional during springs. In each case, the lateral transfer is from regions of higher to lower bed stress, and depends on the elevation of the pycnocline relative to the bed. Collectively, the results indicate that lateral and along-channel gradients in bathymetry and thus stratification, bed stress, and sediment flux lead to an unsteady, heterogeneous distribution of sediment transport and trapping along the estuary rather than trapping solely at a turbidity maximum at the limit of the salinity intrusion.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004JMS....51..281L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004JMS....51..281L"><span>Evaluation of surficial sediment toxicity and sediment physico-chemical characteristics of representative sites in the Lagoon of Venice (Italy)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Losso, C.; Arizzi Novelli, A.; Picone, M.; Marchetto, D.; Pessa, G.; Molinaroli, E.; Ghetti, P. F.; Volpi Ghirardini, A.</p> <p>2004-11-01</p> <p>Toxic hazard in sites with varying types and levels of contamination in the Lagoon of Venice was estimated by means of toxicity bioassays based on the early life-stages of the autochthonous sea urchin Paracentrotus lividus. Elutriate was chosen as the test matrix, due to its ability to highlight potential toxic effects towards sensitive biological components of the water column caused by sediment resuspension phenomena affecting the Lagoon. Surficial sediments (core-top 5 cm deep), directly influenced by resuspension/redeposition processes, and core sediments (core 20 cm deep), recording time-mediated contamination, were sampled in some sites located in the lagoonal area most greatly influenced by anthropogenic activities. Particle size, organic matter and water content were also analysed. In two sites, the results of physical parameters showed that the core-top sediments were coarser than the 20-cm core sediments. Sperm cell toxicity test results showed the negligible acute toxicity of elutriates from all investigated sites. The embryo toxicity test demonstrated a short-term chronic toxicity gradient for elutriates from the 20-cm core sediments, in general agreement both with the expected contamination gradient and with results of the Microtox® solid-phase test. Elutriates of the core-top 5-cm sediments revealed a totally inverted gradient, in comparison with that for the 20-cm core sediments, and the presence of a "hot spot" of contamination in the site chosen as a possible reference. Investigations on ammonia and sulphides as possible confounding factors excluded their contribution to this "hot spot". Integrated physico-chemical and toxicity results on sediments at various depths demonstrated the presence of disturbed sediments in the central basin of the Lagoon of Venice.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFM.H43H1056L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFM.H43H1056L"><span>Mapping Spatial Distributions of Stream Power and Channel Change along a Gravel-Bed River in Northern Yellowstone</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lea, D. M.; Legleiter, C. J.</p> <p>2014-12-01</p> <p>Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing. This study used remotely sensed data and field measurements to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to assess lateral channel mobility and develop a morphologic sediment budget for quantifying net sediment flux for a series of budget cells. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from LiDAR data were used to obtain the discharge and slope values, respectively, needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of channel mobility and sediment transfer. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volume of sediment eroded or deposited during each time increment. Our results indicated a lack of strong correlation between stream power gradients and sediment flux, which we attributed to the geomorphic complexity of the Soda Butte Creek watershed and the inability of our relatively simple statistical approach to link sediment dynamics expressed at a sub-budget cell scale to larger-scale driving forces such as stream power gradients. Future studies should compare the moderate spatial resolution techniques used in this study to very-high resolution data acquired from new fluvial remote sensing technologies to better understand the amount of error associated with stream power, sediment transport, and channel change calculated from historical datasets.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017PApGe.174.4357D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017PApGe.174.4357D"><span>Insights into the Lurking Structures and Related Intraplate Earthquakes in the Region of Bay of Bengal Using Gravity and Full Gravity Gradient Tensor</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Dubey, C. P.; Tiwari, V. M.; Rao, P. R.</p> <p>2017-12-01</p> <p>Comprehension of subsurface structures buried under thick sediments in the region of Bay of Bengal is vital as structural features are the key parameters that influence or are caused by the subsurface deformation and tectonic events like earthquakes. Here, we address this issue using the integrated analysis and interpretation of gravity and full gravity gradient tensor with few seismic profiles available in the poorly known region. A 2D model of the deep earth crust-mantle is constructed and interpreted with gravity gradients and seismic profiles, which made it possible to obtain a visual image of a deep seated fault below the basement associated with thick sediments strata. Gravity modelling along a NE-SW profile crossing the hypocentre of the earthquake of 21 May 2014 ( M w 6.0) in the northern Bay of Bengal suggests that the location of intraplate normal dip fault earthquake in the upper mantle is at the boundary of density anomalies, which is probably connected to the crustal fault. We also report an enhanced structural trend of two major ridges, the 85°E and the 90°E ridges hidden under the sedimentary cover from the computed full gravity gradients tensor components.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012JGRF..117.3014M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012JGRF..117.3014M"><span>Sediment transport by runoff on debris-mantled dryland hillslopes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Michaelides, Katerina; Martin, Gareth J.</p> <p>2012-09-01</p> <p>Hillslopes supply sediment to river channels, and therefore impact drainage basin functioning and evolution. The relationship between hillslope attributes and sediment flux forms the basis of geomorphic transport laws used to model the long-term topographic evolution of drainage basins, but their specific interactions during individual storm events are not well understood. Runoff-driven erosion of coarse particles, prevalent in dryland environments, presents a particular set of conditions for sediment transport that is poorly resolved in current models. In order to address this gap, we developed a particle-based, force-balance model for sheetwash sediment transport on coarse, debris-mantled hillslopes within a rainfall-runoff model. We use the model to examine how the interplay between hillslope attributes (gradient, length and grain size distribution) and runoff characteristics affects sediment transport, grain-size changes on the hillslope, and sediment supply to the slope base. The relationship between sediment flux and hillslope gradient was found to transition from linear above a threshold to sigmoidal depending on hillslope length, initial grain sizes, and runoff characteristics. Grain sizes supplied to the slope base vary in a complex manner with hillslope attributes but an overall coarsening of the hillslopes is found to occur with increasing gradient, corroborating previous findings from field measurements. Intense, short duration storms result in within-hillslope sediment redistribution and equifinality in sediment supply for different hillslope characteristics, which explain the lack of field evidence for any systematic relationships. Our model findings provide insights into hillslope responses to climatic forcing and have theoretical implications for modeling hillslope evolution in dry lands.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011DSRII..58.2354I','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011DSRII..58.2354I"><span>Structural and functional diversity of Nematoda in relation with environmental variables in the Setúbal and Cascais canyons, Western Iberian Margin</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ingels, Jeroen; Billett, David S. M.; Kiriakoulakis, Konstadinos; Wolff, George A.; Vanreusel, Ann</p> <p>2011-12-01</p> <p>Samples collected at two different depths (ca. 3200 and ca. 4200 m) in the Setúbal and Cascais canyons off the Portuguese coast, during the HERMES RRS Charles Darwin cruise CD179, were analysed for (1) sediment biogeochemistry (TOC, TN) and (2) composition, and structural and trophic diversity of nematode communities. Multivariate PERMANOVA analysis on the nematode community data revealed differences between sediment layers that were greater than differences between canyons, water depths, and stations. This suggests that biogeochemical gradients along the vertical sediment profile are crucial in determining nematode community structure. The interaction between canyon conditions and the nematode community is illustrated by biogeochemical patterns in the sediment and the prevalence of nematode genera that are able to persist in disturbed sediments. Trophic analysis of the nematode community indicated that non-selective deposit feeders are dominant, presumably because of their non-selective feeding behaviour compared to other feeding types, which gives them a competitive advantage in exploiting lower-quality food resources. This study presents a preliminary conceptual scheme for interactions between canyon conditions and the resident fauna.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/6180778-salt-dome-related-diagenesis-miocene-sediment-black-bayou-field-cameron-parish-louisiana','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/6180778-salt-dome-related-diagenesis-miocene-sediment-black-bayou-field-cameron-parish-louisiana"><span>Salt-dome-related diagenesis of Miocene sediment, Black Bayou field, Cameron Parish, Louisiana</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Leger, W.R.</p> <p>1988-09-01</p> <p>The Black Bayou field is associated with a salt dome that pierces Miocene sediment and rises to within 900 ft (275 m) of the surface. The Louisiana Gulf Coast regional geothermal gradient is locally affected by the salt dome. The gradient increases to values greater than the regional gradient, 1.26/degrees/F/100 ft (23/degrees/C/km), near the dome. Local effects of the salt dome on clastic diagenesis have been determined by studying sandstone samples adjacent to and away from the salt dome within Miocene sediment. Sample depths range from 4155 to 6145 ft (1266 to 1873 m). Distances of samples from the edgemore » of the dome range from 82 to 820 ft (25 to 250 m).« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010ECSS...90...21M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010ECSS...90...21M"><span>Sedimentary organic matter distributions, burrowing activity, and biogeochemical cycling: Natural patterns and experimental artifacts</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Michaud, Emma; Aller, Robert, C.; Stora, Georges</p> <p>2010-11-01</p> <p>The coupling between biogenic reworking activity and reactive organic matter patterns within deposits is poorly understood and often ignored. In this study, we examined how common experimental treatments of sediment affect the burrowing behavior of the polychaete Nephtys incisa and how these effects may interact with reactive organic matter distributions to alter diagenetic transport - reaction balances. Sediment and animals were recovered from a subtidal site in central Long Island Sound, USA. The upper 15 cm of the sediment was sectioned into sub-intervals, and each interval separately sieved and homogenized. Three initial distributions of sediment and organic substrate reactivity were setup in a series of microcosms: (1) a reconstituted natural pattern with surface-derived sediment overlying sediment obtained from progressively deeper material to a depth of 15 cm (Natural); (2) a 15 cm thick sediment layer composed only of surface-derived sediment (Rich); and (3) a 15 cm thick layer composed of uniformally mixed sediment from the original 15 cm sediment profile (Averaged). The two last treatments are comparable to that used in microcosms in many previous studies of bioturbation and interspecific functional interaction experiments. Sediment grain size distributions were 97.5% silt-clay and showed no depth dependent patterns. Sediment porosity gradients were slightly altered by the treatments. Nepthys were reintroduced and aquariums were X-rayed regularly over 5 months to visualize and quantify spatial and temporal dynamics of burrows. The burrowing behaviour of adult populations having similar total biovolume, biomass, abundance, and individual sizes differed substantially as a function of treatment. Burrows in sediment with natural property gradients were much shallower and less dense than those in microcosms with altered gradients. The burrow volume/biovolume ratio was also lower in the substrate with natural organic reactivity gradients. Variation in food resources or in sediment mechanical properties associated with treatments, the latter in part coupled to remineralization processes such as exopolymer production, may explain the burrowing responses. In addition to demonstrating how species may respond to physical sedimentation events (substrate homogenization) and patterns of reactive organic matter redistribution, these experiments suggest that infaunal species interactions in microcosms, including the absolute and relative fluxes of remineralized solutes, may be subject to artifacts depending on exactly how sediments are introduced experimentally. Nonlocal transport and cylinder microenvironment transport - reaction models readily demonstrate how the multiple interactions between burrowing patterns and remineralization rate distributions can alter relative flux balances, decomposition pathways, and time to steady state.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFM.H13O..04W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFM.H13O..04W"><span>Wood and Sediment Dynamics in River Corridors</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wohl, E.; Scott, D.</p> <p>2015-12-01</p> <p>Large wood along rivers influences entrainment, transport, and storage of mineral sediment and particulate organic matter. We review how wood alters sediment dynamics and explore patterns among volumes of instream wood, sediment storage, and residual pools for dispersed pieces of wood, logjams, and beaver dams. We hypothesized that: volume of sediment per unit area of channel stored in association with wood is inversely proportional to drainage area; the form of sediment storage changes downstream; sediment storage correlates most strongly with wood load; and volume of sediment stored behind beaver dams correlates with pond area. Lack of data from larger drainage areas limits tests of these hypotheses, but analyses suggest a negative correlation between sediment volume and drainage area and a positive correlation between wood and sediment volume. The form of sediment storage in relation to wood changes downstream, with wedges of sediment upstream from jammed steps most prevalent in small, steep channels and more dispersed sediment storage in lower gradient channels. Use of a published relation between sediment volume, channel width, and gradient predicted about half of the variation in sediment stored upstream from jammed steps. Sediment volume correlates well with beaver pond area. Historically more abundant instream wood and beaver populations likely equated to greater sediment storage within river corridors. This review of the existing literature on wood and sediment dynamics highlights the lack of studies on larger rivers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70027092','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70027092"><span>Effects of wave shape on sheet flow sediment transport</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Hsu, T.-J.; Hanes, D.M.</p> <p>2004-01-01</p> <p>A two-phase model is implemented to study the effects of wave shape on the transport of coarse-grained sediment in the sheet flow regime. The model is based on balance equations for the average mass, momentum, and fluctuation energy for both the fluid and sediment phases. Model simulations indicate that the responses of the sheet flow, such as the velocity profiles, the instantaneous bed shear stress, the sediment flux, and the total amount of the mobilized sediment, cannot be fully parameterized by quasi-steady free-stream velocity and may be correlated with the magnitude of local horizontal pressure gradient (or free-stream acceleration). A net sediment flux in the direction of wave advance is obtained for both skewed and saw-tooth wave shapes typical of shoaled and breaking waves. The model further suggests that at critical values of the horizontal pressure gradient, there is a failure event within the bed that mobilizes more sediment into the mobile sheet and enhances the sediment flux. Preliminary attempts to parameterize the total bed shear stress and the total sediment flux appear promising. Copyright 2004 by the American Geophysical Union.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70119129','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70119129"><span>Lateral baroclinic forcing enhances sediment transport from shallows to channel in an estuary</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Lacy, Jessica R.; Gladding, Steve; Brand, Andreas; Collignon, Audric; Stacey, Mark</p> <p>2014-01-01</p> <p>We investigate the dynamics governing exchange of sediment between estuarine shallows and the channel based on field measurements at eight stations spanning the interface between the channel and the extensive eastern shoals of South San Francisco Bay. The study site is characterized by longitudinally homogeneous bathymetry and a straight channel, with friction more important than the Coriolis forcing. Data were collected for 3 weeks in the winter and 4 weeks in the late summer of 2009, to capture a range of hydrologic and meteorologic conditions. The greatest sediment transport from shallows to channel occurred during a pair of strong, late-summer wind events, with westerly winds exceeding 10 m/s for more than 24 h. A combination of wind-driven barotropic return flow and lateral baroclinic circulation caused the transport. The lateral density gradient was produced by differences in temperature and suspended sediment concentration (SSC). During the wind events, SSC-induced vertical density stratification limited turbulent mixing at slack tides in the shallows, increasing the potential for two-layer exchange. The temperature- and SSC-induced lateral density gradient was comparable in strength to salinity-induced gradients in South Bay produced by seasonal freshwater inflows, but shorter in duration. In the absence of a lateral density gradient, suspended sediment flux at the channel slope was directed towards the shallows, both in winter and during summer sea breeze conditions, indicating the importance of baroclinically driven exchange to supply of sediment from the shallows to the channel in South San Francisco Bay and systems with similar bathymetry.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005AGUFM.B24B..08J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005AGUFM.B24B..08J"><span>Biogeochemical Gradients in Wetland Sediments and their Effect on the Fate Trace Metals</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Jaffe, P. R.; Choi, J.; Xu, S.</p> <p>2005-12-01</p> <p>The interactions between sediment biogeochemistry processes and higher plants play a major role on trace metal mobility in wetlands. Most wetland sediments are characterized by steep redox gradients, resulting from the sequential utilization of different electron acceptors during the degradation of organic matter provided by leaf litter and root turnover. Metals in wetland sediments may be immobilized due to precipitation or adsorption to different organic and inorganic sediment constituents. Adsorption onto iron, and manganese oxides, are important in the rhizosphere where iron oxyhydroxide plaques may form on the surface of roots. As the sediments becomes more reduced, bioavailable iron and manganese oxides are used as electron acceptor and are gradually depleted, resulting in the mobilization of some adsorbed species (i.e., As(V), phosphate, etc.), the reduction of some trace metals such as Cr(VI) (which is then immobilized as Cr(III)), and for more reduced conditions the immobilization of trace metals (i.e., Cd, Pb, Zn) as sulfides. Results from numerical simulations, laboratory experiments, and field measurements will be presented, showing how redox gradients and hence, trace-metal immobilization, in wetlands respond to external forcing functions such as changes in nutrient loading, plant distribution, seasonal and diurnal plant activity (specifically evapotranspiration and oxygen release), and temporal or spatial changes in the profile of iron and manganese oxides.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRI..126...50L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRI..126...50L"><span>Hard substrate in the deep ocean: How sediment features influence epibenthic megafauna on the eastern Canadian margin</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lacharité, Myriam; Metaxas, Anna</p> <p>2017-08-01</p> <p>Benthic habitats on deep continental margins (> 1000 m) are now considered heterogeneous - in particular because of the occasional presence of hard substrate in a matrix of sand and mud - influencing the distribution of megafauna which can thrive on both sedimented and rocky substrates. At these depths, optical imagery captured with high-definition cameras to describe megafauna can also describe effectively the fine-scale sediment properties in the immediate vicinity of the fauna. In this study, we determined the relationship between local heterogeneity (10-100 sm) in fine-scale sediment properties and the abundance, composition, and diversity of megafauna along a large depth gradient (1000-3000 m) in a previously-unexplored habitat: the Northeast Fan, which lies downslope of submarine canyons off the Gulf of Maine (northwest Atlantic). Substrate heterogeneity was quantified using a novel approach based on principles of computer vision. This approach proved powerful in detecting gradients in sediment, and sporadic complex features (i.e. large boulders) in an otherwise homogeneous environment because it characterizes sediment properties on a continuous scale. Sediment heterogeneity influenced megafaunal diversity (morphospecies richness and Shannon-Wiener Index) and community composition, with areas of higher substrate complexity generally supported higher diversity. However, patterns in abundance were not influenced by sediment properties, and may be best explained by gradients in food supply. Our study provides a new approach to quantify fine-scale sediment properties and assess their role in shaping megafaunal communities in the deep sea, which should be included into habitat studies given their potential ecological importance.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19.6316W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19.6316W"><span>Sediment-peridotite interactions in a thermal gradient: mineralogic and geochemical effects and the "sedimentary signature" of arc magmas</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Woodland, Alan; Girnis, Andrei; Bulatov, Vadim; Brey, Gerhard; Höfer, Heidi; Gerdes, Axel</p> <p>2017-04-01</p> <p>Strong thermal and chemical gradients are characteristic of the slab-mantle interface in subduction zones where relatively cold sediments become juxtaposed with hotter peridotite of the mantle wedge. The formation of arc magmas is directly related to mass transfer processes under these conditions. We have undertaken a series of experiments to simulate interactions and mass transfer at the slab-mantle interface. In addition to having juxtaposed sediment and peridotite layers, the experiments were performed under different thermal gradients. The sediment had a composition similar to GLOSS (1) and also served as the source of H2O, CO2 and a large selection of trace elements. The peridotite was a depleted garnet harzburgite formed from a mixture of natural hand-picked olivine, opx and garnet. Graphite was added to this mixture to establish a redox gradient between the two layers. Experiments were performed at 7.5-10 GPa to simulate the processes during deep subduction. The thermal gradient was achieved by displacing the sample capsule (Re-lined Pt) from the center of the pressure cell. The gradient was monitored with separate thermocouples at each end of the capsule and by subsequent opx-garnet thermometry across the sample. Maximum temperatures varied from 1400˚ -900˚ C and gradients ranged from 200˚ -800˚ C. Thus, in some experiments melting occurred in the sediment layer and in others this layer remained subsolidus, only devolatilizing. Major and trace elements were transported both in the direction of melt percolation to the hot zone, as well as down temperature. This leads to the development of zones with discrete phase assemblages. Olivine in the peridotite layer becomes converted to orthopyroxene, which is due to Si addition, but also migration of Mg and Fe towards the sediment. In the coldest part of a sample, the sediment is converted into an eclogitic cpx + garnet assemblage. A thin zone depleted in almost all trace elements is formed in peridotite directly above the sediment/peridotite boundary and defines the region of maximum metasomatic alteration. With a low Tmin, fluid-mobile Ba, Rb, Sr and Li are more strongly transported into the melt zone compared to HFSE and REE. At Tmin > 700˚ C, all incompatible elements are extracted from the solid into the melt. However, the mineral assemblage controls which elements are held back in the solid residue (i.e. MREE, HREE, Y, Sc, and to a lesser extent Ti, Zr and Hf in garnet). Peridotite-sediment interaction can produce humite-group minerals, particularly in the presence of F. Negative Nb-Ta anomalies are caused by rutile and/or humite phases. Transport of melt or fluid from the sediment to the overlying mantle wedge produces metasomatized magma sources from which basaltic melts with sedimentary geochemical signatures can be derived. Adding even 1% of melt or fluid to depleted mantle peridotite is sufficient to produce basaltic melts with incompatible element contents similar to those observed in natural subduction-related magmas. Such signatures are retained at 6.5 and even 10 GPa when Tmin < 700˚ C. Plank, T., Langmuir C., 1998. Chem. Geol. 145, 325-394.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSMM44A0473R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSMM44A0473R"><span>Changes in the Functional Potential of Diverse and Active Bacterial Communities in Arctic Deep-Sea Sediments along a Water Depth Gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Rapp, J. Z.; Bienhold, C.; Offre, P.; Boetius, A.</p> <p>2016-02-01</p> <p>The deep sea covers approximately 70% of the Earth's surface and the majority of its seafloor is composed of fine-grained sediments. Bacteria are the dominant organisms in these sediments, accounting for up to 90% of total benthic biomass. Although benthic bacterial communities are assumed to play a central role in biogeochemical cycling at the seafloor, we still have very limited knowledge of their diversity, activity and ecological functions. We sampled Arctic deep-sea surface sediments from seven stations along a gradient from 1000 m to 5500 m water depth at the long-term ecological research station HAUSGARTEN in Fram Strait. Bacterial cell numbers decreased with depth from 3.8*108 to 1.3*108 cells per ml sediment. Illumina 16S rRNA gene surveys based on DNA and cDNA revealed substantial shifts in the structure of the total and active bacterial community along this gradient, which could be linked to environmental parameters, especially organic matter availability. The functional potential and actual activity of microbial communities was investigated using meta-genomic and -transcriptomic sequencing of four representative samples. Reconstruction of 16S rRNA genes from metagenomic data indicated a stronger contribution of certain groups at 1200-2500 m depth (e.g. OM190, Planctomycetacia, Betaproteobacteria) as compared to 3500-5500 m depth (e.g. SAR202 clade, Subgroup 22, Cytophagia). Analysis of orthologous gene clusters and protein families suggested that the genetic potential of microbial communities at the deepest station varied from that of communities at shallower depth, with higher representation of genes involved in the TCA cycle and in the biosynthesis of fatty acids, amino acids and vitamin biosynthesis at the deepest station. The observed variations may result from the accumulation of organic matter at the deepest station caused by the funnel-like topography at this site. The research contributes to European Research Council Advanced Investigator grant no. 294757.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29478654','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29478654"><span>Spatial and historical distribution of organic phosphorus driven by environment conditions in lake sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lü, Changwei; He, Jiang; Wang, Bing</p> <p>2018-02-01</p> <p>The chemistry of sedimentary organic phosphorus (OP) and its fraction distribution in sediments are greatly influenced by environmental conditions such as terrestrial inputs and runoffs. The linkage of OP with environmental conditions was analyzed on the basis of OP spatial and historical distributions in lake sediments. The redundancy analysis and OP spatial distribution results suggested that both NaOH-OP (OP extracted by NaOH) and Re-OP (residual OP) in surface sediments from the selected 13 lakes reflected the gradient effects of environmental conditions and the autochthonous and/or allochthonous inputs driven by latitude zonality in China. The lake level and salinity of Lake Hulun and the runoff and precipitation of its drainage basin were reconstructed on the basis of the geochemistry index. This work showed that a gradient in weather conditions presented by the latitude zonality in China impacts the OP accumulation through multiple drivers and in many ways. The drivers are mainly precipitation and temperature, governing organic matter (OM) production, degradation rate and transportation in the watershed. Over a long temporal dimension (4000years), the vertical distributions of Re-OP and NaOH-OP based on a dated sediment profile from HLH were largely regulated by the autochthonous and/or allochthonous inputs, which depended on the environmental and climate conditions and anthropogenic activities in the drainage basin. This work provides useful environmental geochemistry information to understand the inherent linkage of OP fractionation with environmental conditions and lake evolution. Copyright © 2017. Published by Elsevier B.V.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014PhDT.......186L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014PhDT.......186L"><span>Mapping spatial patterns of stream power and channel change along a gravel-bed river in northern Yellowstone</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lea, Devin M.</p> <p></p> <p>Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing or field surveys. This study used remote sensing and GIS tools along with field data to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to develop a locational probability map and morphologic sediment budget to assess lateral channel mobility and changes in net sediment flux. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from light detection and ranging (LiDAR) data were used to obtain the discharge and slope values needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of sediment sources and sinks. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volumetric change in each time increment. Results indicated a lack of strong correlation between stream power gradients and sediment response, highlighting the geomorphic complexity of Soda Butte Creek and the inability of relatively simple statistical approaches to link sub-budget cell-scale sediment dynamics to larger-scale driving forces such as stream power gradients. Improving the moderate spatial resolution techniques used in this study and acquiring very-high resolution data from recently developed methods in fluvial remote sensing could help improve understanding of the spatial organization of stream power, sediment transport, and channel change in dynamic natural rivers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20058854','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20058854"><span>Biochemical characterization of native Usher protein complexes from a vesicular subfraction of tracheal epithelial cells.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zallocchi, Marisa; Sisson, Joseph H; Cosgrove, Dominic</p> <p>2010-02-16</p> <p>Usher syndrome is the major cause of deaf/blindness in the world. It is a genetic heterogeneous disorder, with nine genes already identified as causative for the disease. We noted expression of all known Usher proteins in bovine tracheal epithelial cells and exploited this system for large-scale biochemical analysis of Usher protein complexes. The dissected epithelia were homogenized in nondetergent buffer and sedimented on sucrose gradients. At least two complexes were evident after the first gradient: one formed by specific isoforms of CDH23, PCDH15, and VLGR-1 and a different one at the top of the gradient that included all of the Usher proteins and rab5, a transport vesicle marker. TEM analysis of these top fractions found them enriched in 100-200 nm vesicles, confirming a vesicular association of the Usher complex(es). Immunoisolation of these vesicles confirmed some of the associations already predicted and identified novel interactions. When the vesicles are lysed in the presence of phenylbutyrate, most of the Usher proteins cosediment into the gradient at a sedimentation coefficient of approximately 50 S, correlating with a predicted molecular mass of 2 x 10(6) Da. Although it is still unclear whether there is only one complex or several independent complexes that are trafficked within distinct vesicular pools, this work shows for the first time that native Usher protein complexes occur in vivo. This complex(es) is present primarily in transport vesicles at the apical pole of tracheal epithelial cells, predicting that Usher proteins may be directionally transported as complexes in hair cells and photoreceptors.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_2");'>2</a></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li class="active"><span>4</span></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_4 --> <div id="page_5" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li class="active"><span>5</span></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="81"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016EGUGA..1816810D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016EGUGA..1816810D"><span>River sedimentation and channel bed characteristics in northern Ethiopia</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Demissie, Biadgilgn; Billi, Paolo; Frankl, Amaury; Haile, Mitiku; Lanckriet, Sil; Nyssen, Jan</p> <p>2016-04-01</p> <p>Excessive sedimentation and flood hazard are common in ephemeral streams which are characterized by flashy floods. The purposes of this study was to investigate the temporal variability of bio-climatic factors in controlling sediment supply to downstream channel reaches and the effect of bridges on local hydro-geomorphic conditions in causing the excess sedimentation and flood hazard in ephemeral rivers of the Raya graben (northern Ethiopia). Normalized Difference Vegetation Index (NDVI) was analyzed for the study area using Landsat imageries of 1972, 1986, 2000, 2005, 2010, and 2012). Middle term, 1993-2011, daily rainfall data of three meteorological stations, namely, Alamata, Korem and Maychew, were considered to analyse the temporal trends and to calculate the return time intervals of rainfall intensity in 24 hours for 2, 5, 10 and 20 years using the log-normal and the Gumbel extreme events method. Streambed gradient and bed material grain size were measured in 22 river reaches (at bridges and upstream). In the study catchments, the maximum NDVI values were recorded in the time interval from 2000 to 2010, i.e. the decade during which the study bridges experienced the most severe excess sedimentation problems. The time series analysis for a few rainfall parameters do not show any evidence of rainfall pattern accountable for an increase in sediment delivery from the headwaters nor for the generation of higher floods with larger bedload transport capacities. Stream bed gradient and bed material grain size data were measured in order to investigate the effect of the marked decrease in width from the wide upstream channels to the narrow recently constructed bridges. The study found the narrowing of the channels due to the bridges as the main cause of the thick sedimentation that has been clogging the study bridges and increasing the frequency of overbank flows during the last 15 years. Key terms: sedimentation, ephemeral streams, sediment size, bridge clogging</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017JSR...127...26N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017JSR...127...26N"><span>Nitrate consumption in sediments of the German Bight (North Sea)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Neumann, Andreas; van Beusekom, Justus E. E.; Holtappels, Moritz; Emeis, Kay-Christian</p> <p>2017-09-01</p> <p>Denitrification on continental margins and in coastal sediments is a major sink of reactive N in the present nitrogen cycle and a major ecosystem service of eutrophied coastal waters. We analyzed the nitrate removal in surface sediments of the Elbe estuary, Wadden Sea, and adjacent German Bight (SE North Sea) during two seasons (spring and summer) along a eutrophication gradient ranging from a high riverine nitrate concentrations at the Elbe Estuary to offshore areas with low nitrate concentrations. The gradient encompassed the full range of sediment types and organic carbon concentrations of the southern North Sea. Based on nitrate penetration depth and concentration gradient in the porewater we estimated benthic nitrate consumption rates assuming either diffusive transport in cohesive sediments or advective transport in permeable sediments. For the latter we derived a mechanistic model of porewater flow. During the peak nitrate discharge of the river Elbe in March, the highest rates of diffusive nitrate uptake were observed in muddy sediments (up to 2.8 mmol m- 2 d- 1). The highest advective uptake rate in that period was observed in permeable sediment and was tenfold higher (up to 32 mmol m- 2 d- 1). The intensity of both diffusive and advective nitrate consumption dropped with the nitrate availability and thus decreased from the Elbe estuary towards offshore stations, and were further decreased during late summer (minimum nitrate discharge) compared to late winter (maximum nitrate discharge). In summary, our rate measurements indicate that the permeable sediment accounts for up to 90% of the total benthic reactive nitrogen consumption in the study area due to the high efficiency of advective nitrate transport into permeable sediment. Extrapolating the averaged nitrate consumption of different sediment classes to the areas of Elbe Estuary, Wadden Sea and eastern German Bight amounts to an N-loss of 3.1 ∗ 106 mol N d- 1 from impermeable, diffusion-controlled sediment, and 5.2 ∗ 107 mol N d- 1 from permeable sediment with porewater advection.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3808301','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3808301"><span>Sediment Enzyme Activities and Microbial Community Diversity in an Oligotrophic Drinking Water Reservoir, Eastern China</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Zhang, Haihan; Huang, Tinglin; Liu, Tingting</p> <p>2013-01-01</p> <p>Drinking water reservoir plays a vital role in the security of urban water supply, yet little is known about microbial community diversity harbored in the sediment of this oligotrophic freshwater environmental ecosystem. In the present study, integrating community level physiological profiles (CLPPs), nested polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis (DGGE) and clone sequence technologies, we examined the sediment urease and protease activities, bacterial community functional diversity, genetic diversity of bacterial and fungal communities in sediments from six sampling sites of Zhou cun drinking water reservoir, eastern China. The results showed that sediment urease activity was markedly distinct along the sites, ranged from 2.48 to 11.81 mg NH3-N/(g·24h). The highest average well color development (AWCD) was found in site C, indicating the highest metabolic activity of heterotrophic bacterial community. Principal component analysis (PCA) revealed tremendous differences in the functional (metabolic) diversity patterns of the sediment bacterial communities from different sites. Meanwhile, DGGE fingerprints also indicated spatial changes of genetic diversity of sediment bacterial and fungal communities. The sequence BLAST analysis of all the sediment samples found that Comamonas sp. was the dominant bacterial species harbored in site A. Alternaria alternate, Allomyces macrogynus and Rhizophydium sp. were most commonly detected fungal species in sediments of the Zhou cun drinking water reservoir. The results from this work provide new insights about the heterogeneity of sediment microbial community metabolic activity and genetic diversity in the oligotrophic drinking water reservoir. PMID:24205265</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFM.T42D..08M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFM.T42D..08M"><span>Geomorphology of the Eastern North American Continental Margin: the role of deep sea sedimentation processes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mosher, D. C.; Campbell, C.; Piper, D.; Chaytor, J. D.; Gardner, J. V.; Rebesco, M.</p> <p>2016-12-01</p> <p>Deep-sea sedimentation processes impart a fundamental control on the morphology of the western North Atlantic continental margin from Blake Spur to Hudson Strait. This fact is illustrated by the variable patterns of cross-margin gradients that are based on extensive new multibeam echo-sounder data in concert with subbottom profiler and seismic reflection data. Most of the continental margin has a steep (>3o) upper slope down to 1500 to 2500 m and then a gradual middle and lower slope with a general concave upward shape There is a constant interplay of deep sea sedimentation processes, but the general morphology is dictated by the dominant one. Erosion by off-shelf sediment transport in turbidity currents creating channels, gullies and canyons creates the steep upper slope. These gullies and canyons amalgamate to form singular channels that are conduits to the abyssal plain. This process results in a general seaward flattening of gradients, producing an exponentially decaying slope profile. Comparatively, sediment mass failure produces steeper upper slopes due to head scarp development and a wedging architecture to the lower slope as deposits thin in the downslope direction. This process results in either a two-segment slope, and/or a significant downslope gradient change where MTDs pinch out. Large sediment bodies deposited by contour-following currents are developed all along the margin. Blake Ridge, Sackville Spur, and Hamilton Spur are large detached drifts on disparate parts of the margin. Along their crests, they form a linear profile from the shelf to abyssal plain. Deeper portions of the US continental margin are dominated by the Chesapeake Drift and Hatteras Outer Ridge; both plastered elongate mounded drifts. Farther north, particularly on the Grand Banks margin, are plastered and separated drifts. These drifts tend to form bathymetric steps in profile, where they onlap the margin. Stacked drifts create several steps. Turbidites of the abyssal plain onlap the lowermost drift creating a significant gradient change at this juncture. Understanding the geomorphological consequences of deep sea sedimentation processes is important to extended continental shelf mapping, for example, in which gradient change is a critical metric.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1981SedG...29..171V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1981SedG...29..171V"><span>Braided fluvial sedimentation in the lower paleozoic cape basin, South Africa</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Vos, Richard G.; Tankard, Anthony J.</p> <p>1981-07-01</p> <p>Lower Paleozoic braided stream deposits from the Piekenier Formation in the Cape Province, South Africa, provide information on lateral and vertical facies variability in an alluvial plain complex influenced by a moderate to high runoff. Four braided stream facies are recognized on the basis of distinct lithologies and assemblages of sedimentary structures. A lower facies, dominated by upward-fining conglomerate to sandstone and mudstone channel fill sequences, is interpreted as a middle to lower alluvial plain deposit with significant suspended load sedimentation in areas of moderate to low gradients. These deposits are succeeded by longitudinal conglomerate bars which are attributed to middle to upper alluvial plain sedimentation with steeper gradients. This facies is in turn overlain by braid bar complexes of large-scale transverse to linguoid dunes consisting of coarse-grained pebbly sandstones with conglomerate lenses. These bar complexes are compared with environments of the Recent Platte River. They represent a middle to lower alluvial plain facies with moderate gradients and no significant suspended load sedimentation or vegetation to stabilize channels. These bar complexes interfinger basinward with plane bedded medium to coarse-grained sandstones interpreted as sheet flood deposits over the distal portions of an alluvial plain with low gradients and lacking fine-grained detritus or vegetation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26481412','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26481412"><span>Metal release from contaminated coastal sediments under changing pH conditions: Implications for metal mobilization in acidified oceans.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wang, Zaosheng; Wang, Yushao; Zhao, Peihong; Chen, Liuqin; Yan, Changzhou; Yan, Yijun; Chi, Qiaoqiao</p> <p>2015-12-30</p> <p>To investigate the impacts and processes of CO2-induced acidification on metal mobilization, laboratory-scale experiments were performed, simulating the scenarios where carbon dioxide was injected into sediment-seawater layers inside non-pressurized chambers. Coastal sediments were sampled from two sites with different contamination levels and subjected to pre-determined pH conditions. Sediment samples and overlying water were collected for metal analysis after 10-days. The results indicated that CO2-induced ocean acidification would provoke increased metal mobilization causing adverse side-effects on water quality. The mobility of metals from sediment to the overlying seawater was correlated with the reduction in pH. Results of sequential extractions of sediments illustrated that exchangeable metal forms were the dominant source of mobile metals. Collectively, our data revealed that high metal concentrations in overlying seawater released from contaminated sediments under acidic conditions may strengthen the existing contamination gradients in Maluan Bay and represent a potential risk to ecosystem health in coastal environments. Copyright © 2015 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21800629','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21800629"><span>[Microbial diversity of sediments from the coasts of Dalian Changshan Islands].</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Li, Jialin; Wang, Zhonghua; Qin, Song; Wang, Guangyi</p> <p>2011-05-01</p> <p>To understand the impacts of anthropogenic activities on structure and composition of bacterial communities and to evaluate how bacterial communities respond to environmental gradients at coastal sediments. The diversity of bacterial communities in sediments from tourist and mariculture zones at coastal area of Dalian Changshan Islands was assessed using terminal restriction fragment length polymorphism (t-RFLP) and denaturing gradient gel electrophoresis (DGGE) approaches. Meanwhile, 16S rRNA clone library was constructed to reveal the composition and structure of bacterial communities in the most seriously polluted site (D4). There were much higher values of richness, Shannon-wiener and evenness index at D4 site by the analysis of terminal restriction fragments (t-RFs). The clustering result on the t-RFs areas and DGGE patterns showed that the bacterial diversity of tourist zone were more similar, while the distinction was increased with pollution levels among the tourist and mariculture zones. The 16S rRNA clone of D4 revealed that the Proteobacteria were the dominant phylum, and gamma-proteobacteria was the main class within Proteobacteria. The study documented changes in bacterial community structure by human impacts of mariculture than geographical location.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://hdl.handle.net/2060/19770010745','NASA-TRS'); return false;" href="http://hdl.handle.net/2060/19770010745"><span>Influence of zero-G on single-cell systems and zero-G fermenter design concepts</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Mayeux, J. V.</p> <p>1977-01-01</p> <p>An analysis was made to identify potential gravity-sensitive mechanisms that may be present in the single-cell growth system. Natural convection (density gradients, induced sedimentation, and buoyancy) is important in microbial systems. The absence of natural convection in the space-flight environment could provide an opportunity for new approaches for developments in industrial fermentation and agriculture. Some of the potential influences of gravity (i.e., convection, sedimentation, etc.) on the cell were discussed to provide insight into what experimental areas may be pursued in future space-flight research programs.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004AGUFM.S43B0999T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004AGUFM.S43B0999T"><span>Acoustic Velocity Of The Sediments Offshore Southwestern Taiwan</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Tsai, C.; Liu, C.; Huang, P.</p> <p>2004-12-01</p> <p>Along the Manila Trench south of 21øXN, deep-sea sediments are being underthrusted beneath the Taiwan accretionary prism which is composed of the Kaoping Slope and Hengchun Ridge. Offshore southwestern Taiwan, foreland sediments and Late Miocene strata of the Tainan Basin are being accreted onto the fold-and thrust belt of the syn-collision accretionary wedge of the Kaoping Slope. The Kaoping Slope consists of thick Neogene to Recent siliciclastics deformed by fold-and-thrust structures and mud diapers. These Pliocene-Quaternary sediments deposited in the Kaoping Shelf and upper slope area are considered to be paleo-channel deposits confined by NNE-SSW trend mud diapiric structure. Seismic P-wave velocities of the sediment deposited in the Kaoping Shelf and Kaoping Slope area are derived from mutichannel seismic reflection data and wide-angle reflection and refraction profiles collected by sonobuoys. Sediment velocity structures constrained from mutichannel seismic reflection data using velocity spectrum analysis method and that derived from sonobuoy data using tau-sum inversion method are compared, and they both provide consistent velocity structures. Seismic velocities were analyzed along the seismic profile from the surface to maximum depths of about 2.0 km below the seafloor. Our model features a sediment layer1 with 400 ms in thickness and a sediment layer2 with 600 ms in thickness. For the shelf sediments, we observe a linear interval velocity trend of V=1.53+1.91T in layer1, and V=1.86+0.87T in layer2, where T is the one way travel time within the layer. For the slop sediment, the trend of V=1.47+1.93T in layer1, and V=1.70+1.55T in layer2. The layer1¡¦s velocities gradients are similar between the shelf (1.91 km/sec2) and the slope(1.93 km/sec2). It means layer1 distributes over the slope and shelf widely. The result of the sediment velocity gradients in this area are in good agreement with that reported for the south Atlantic continental margins.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018OcDyn..68..309C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018OcDyn..68..309C"><span>Longitudinal variation in lateral trapping of fine sediment in tidal estuaries: observations and a 3D exploratory model</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Chen, Wei; de Swart, Huib E.</p> <p>2018-03-01</p> <p>This study investigates the longitudinal variation of lateral entrapment of suspended sediment, as is observed in some tidal estuaries. In particular, field data from the Yangtze Estuary are analysed, which reveal that in one cross-section, two maxima of suspended sediment concentration (SSC) occur close to the south and north sides, while in a cross-section 2 km down-estuary, only one SSC maximum on the south side is present. This pattern is found during both spring tide and neap tide, which are characterised by different intensities of turbulence. To understand longitudinal variation in lateral trapping of sediment, results of a new three-dimensional exploratory model are analysed. The hydrodynamic part contains residual flow due to fresh water input, density gradients and Coriolis force and due to channel curvature-induced leakage. Moreover, the model includes a spatially varying eddy viscosity that accounts for variation of intensity of turbulence over the spring-neap cycle. By imposing morphodynamic equilibrium, the two-dimensional distribution of sediment in the domain is obtained analytically by a novel procedure. Results reveal that the occurrence of the SSC maxima near the south side of both cross-sections is due to sediment entrapment by lateral density gradients, while the second SSC maximum near the north side of the first cross-section is by sediment transport due to curvature-induced leakage. Coriolis deflection of longitudinal flow also contributes the trapping of sediment near the north side. This mechanism is important in the upper estuary, where the flow due to lateral density gradients is weak.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AGUFMNG43A..05F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AGUFMNG43A..05F"><span>Sediment Transport and Dust Flux in Disturbed and Undisturbed Dryland Ecosystems: From Site Specific Estimates to Trends Across Gradients of Woody Plant Cover</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Field, J. P.; Breshears, D. D.; Whicker, J. J.; Zou, C. B.; Allen, C. D.</p> <p>2007-12-01</p> <p>Aeolian sediment transport and associated dust flux are important processes in dryland ecosystems where vegetation cover is inherently sparse relative to more mesic ecosystems. Aeolian processes in dryland ecosystems are strongly influenced by the spatial density of roughness elements, which is largely determined by woody plant height and spacing. Despite the global extent of dryland ecosystems, relatively few measurements of aeolian sediment transport have been made within these systems, and these few existing measurements have not been systematically evaluated with respect to gradients of woody plant cover. We report measured aeolian sediment transport in an undisturbed and disturbed semiarid grasslands in southern Arizona. To place our estimate in a broader context, we compared our site-specific findings to other recently published measurements of aeolian sediment transport in disturbed and undisturbed dryland ecosystems. We propose a new conceptual framework for dryland aeolian sediment transport and dust flux as a function of woody plant cover that integrates our site-specific data with the broader literature base. Our findings suggest that for relatively undisturbed ecosystems, shrublands have inherently greater aeolian sediment transport and associated dust flux than grasslands, woodlands and forests due to wake interference flow associated with the height and spacing of woody roughness elements. Furthermore, the proposed framework suggests that for disturbed ecosystems, the upper bound for aeolian sediment transport increases as a function of decreasing woody plant cover. As a result, aeolian sediment transport spans a relatively small range in woodlands and forests, an intermediate range in shrublands, and the largest range in grasslands. Our framework is applicable both within locations and across broad gradients</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016CSR...130....1C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016CSR...130....1C"><span>Bacterial community characterization and biogeochemistry of sediments from a tropical upwelling system (Cabo Frio, Southeastern Brazil)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Castelo-Branco, R.; Barreiro, A.; Silva, F. S.; Carvalhal-Gomes, S. B. V.; Fontana, L. F.; Mendonça-Filho, J. G.; Vasconcelos, V.</p> <p>2016-11-01</p> <p>The Cabo Frio Upwelling System is one of the largest and most productive areas in southeastern Brazil. Although it is well-known that bacterial communities play a crucial role in the biogeochemical cycles and food chain of marine ecosystems, little is known regarding the microbial communities in the sediments of this upwelling region. In this research, we address the effect of different hydrological conditions on the biogeochemistry of sediments and the diversity of bacterial communities. Biogeochemistry profiles of sediments from four sampling stations along an inner-outer transect on the continental shelf were evaluated and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments was used to study the bacterial community composition in these sediments. Our sequencing analysis of excised bands identified Alpha- and Gammaproteobacteria, Bacteroidetes and bacteria belonging to the Firmicutes phyla as the phylogenetic groups, indicating the existence of great diversity in these marine sediments. In this multidisciplinary study, the use of multivariate analysis was crucial for understanding how biogeochemical profiles influence bacterial community distribution. A Principal Component Analysis (PCA) indicated that the biogeochemical variables exhibited a clear spatial pattern that is mainly related to hydrological conditions. A Correspondence Analysis (CA) revealed an important association between certain taxonomic groups and specific sampling locations. Canonical Correspondence Analysis (CCA) demonstrated that the biogeochemistry influences the structure of the bacterial community in sediments. Among the bacterial groups identified, the most taxonomically diverse classes (Alphaproteobacteria and Gammaproteobacteria) were found to be distributed regardless of any studied biogeochemical variables influences, whereas other groups responded to biogeochemical conditions which, in turn, were influenced by hydrological conditions. This finding was observed for members of the two classes in the Bacteroidetes phylum, which were associated with either proteins or carbohydrates.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/of/2017/1073/ofr20171073.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/of/2017/1073/ofr20171073.pdf"><span>Design and methods of the Midwest Stream Quality Assessment (MSQA), 2013</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Garrett, Jessica D.; Frey, Jeffrey W.; Van Metre, Peter C.; Journey, Celeste A.; Nakagaki, Naomi; Button, Daniel T.; Nowell, Lisa H.</p> <p>2017-10-18</p> <p>During 2013, the U.S. Geological Survey (USGS) National Water-Quality Assessment Project (NAWQA), in collaboration with the USGS Columbia Environmental Research Center, the U.S. Environmental Protection Agency (EPA) National Rivers and Streams Assessment (NRSA), and the EPA Office of Pesticide Programs assessed stream quality across the Midwestern United States. This Midwest Stream Quality Assessment (MSQA) simultaneously characterized watershed and stream-reach water-quality stressors along with instream biological conditions, to better understand regional stressor-effects relations. The MSQA design focused on effects from the widespread agriculture in the region and urban development because of their importance as ecological stressors of particular concern to Midwest region resource managers.A combined random stratified selection and a targeted selection based on land-use data were used to identify and select sites representing gradients in agricultural intensity across the region. During a 14-week period from May through August 2013, 100 sites were selected and sampled 12 times for contaminants, nutrients, and sediment. This 14-week water-quality “index” period culminated with an ecological survey of habitat, periphyton, benthic macroinvertebrates, and fish at all sites. Sediment was collected during the ecological survey for analysis of sediment chemistry and toxicity testing. Of the 100 sites, 50 were selected for the MSQA random stratified group from 154 NRSA sites planned for the region, and the other 50 MSQA sites were selected as targeted sites to more evenly cover agricultural and urban stressor gradients in the study area. Of the 50 targeted sites, 12 were in urbanized watersheds and 21 represented “good” biological conditions or “least disturbed” conditions. The remaining 17 targeted sites were selected to improve coverage of the agricultural intensity gradient or because of historical data collection to provide temporal context for the study.This report provides a detailed description of the MSQA study components, including surveys of ecological conditions, routine water sampling, deployment of passive polar organic compound integrative samplers, and stream sediment sampling at all sites. Component studies that were completed to provide finer scale temporal data or more extensive analysis at selected sites, included continuous water-quality monitoring, daily pesticide sampling, laboratory and in-stream water toxicity testing efforts, and deployment of passive suspended-sediment samplers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26070735','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26070735"><span>Element remobilization, "internal P-loading," and sediment-P reactivity researched by DGT (diffusive gradients in thin films) technique.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wu, Zhihao; Wang, Shengrui; He, Mengchang; Zhang, Li; Jiao, Lixin</p> <p>2015-10-01</p> <p>Labile P, Fe, and sulfide with the high spatial resolution in sediment porewater of five sites (A-E) of Dianchi Lake (China) were measured at same locations using AgI/Chelex-100, Chelex-100, and ferrihydrite DGT (diffusive gradients in thin films) probes. DGT derived P/Fe/S concentrations in sediment porewater on millimeter or sub-millimeter scale in order to reveal the element remobilization process and the mechanism of "internal P-loading" of sediments in Dianchi Lake. Decomposition of alga biomass in the uppermost sediment layer and the reductive dissolution of Fe-bound P in the anoxic sediment were the two main processes causing P release. A dynamic numerical model-DIFS (DGT-induced flux in sediments) was used to assess sediment-P reactivity (capacity of solid pool and rate of transfer) and P release risk by kinetic parameter-T C (1089∼20,450 s), distribution coefficient-K d (167.09∼502.0 cm(3) g(-1)), resupply parameter-R (from 0.242 to 0.518), and changes of dissolved/sorbed concentration, R and M at the microzone of DGT/porewater/sediment.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70179417','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70179417"><span>Toxicity of contaminated sediments in dilution series with control sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Nelson, M.K.; Landrum, P.F.; Burton, G.A.; Klaine, S.J.; Crecelius, E.A.; Byl, T.D.; Gossiaux, Duane C.; Tsymbal, V.N.; Cleveland, L.; Ingersoll, Christopher G.; Sasson-Brickson, G.</p> <p>1993-01-01</p> <p>The use of dilutions has been the foundation of our approach for assessing contaminated water, and accordingly, it may be important to establish similar or parallel approaches for sediment dilutions. Test organism responses to dilution gradients can identify the degree of necessary sediment alteration to reduce the toxicity. Using whole sediment dilutions to represent the complex interactions of in situ sediments can identify the toxicity, but the selection of the appropriate diluent for the contaminated sediment may affect the results and conclusions drawn. Contaminated whole sediments were examined to evaluate the toxicity of dilutions of sediments with a diversity of test organisms. Dilutions of the contaminated sediments were prepared with differing diluents that varied in organic carbon content, particle size distribution, and volatile solids. Studies were conducted using four macroinvertebrates and a vascular, rooted plant. Responses by some test organisms followed a sigmoidal dose-response curve, but others followed a U-shaped curve. Initial dilutions reduced toxicity as expected, but further dilution resulted in an increase in toxicity. The type of diluent used was an important factor in assessing the sediment toxicity, because the control soil reduced toxicity more effectively than sand as a diluent of the same sediment. Using sediment chemical and physical characteristics as an indicator of sediment dilution may not be as useful as chemical analysis of contaminants, but warrants further investigation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70192222','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70192222"><span>Channel response to sediment release: insights from a paired analysis of dam removal</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Collins, Mathias J.; Snyder, Noah P.; Boardman, Graham; Banks, William S.; Andrews, Mary; Baker, Matthew E.; Conlon, Maricate; Gellis, Allen; McClain, Serena; Miller, Andrew; Wilcock, Peter</p> <p>2017-01-01</p> <p>Dam removals with unmanaged sediment releases are good opportunities to learn about channel response to abruptly increased bed material supply. Understanding these events is important because they affect aquatic habitats and human uses of floodplains. A longstanding paradigm in geomorphology holds that response rates to landscape disturbance exponentially decay through time. However, a previous study of the Merrimack Village Dam (MVD) removal on the Souhegan River in New Hampshire, USA, showed that an exponential function poorly described the early geomorphic response. Erosion of impounded sediments there was two-phased. We had an opportunity to quantitatively test the two-phase response model proposed for MVD by extending the record there and comparing it with data from the Simkins Dam removal on the Patapsco River in Maryland, USA. The watershed sizes are the same order of magnitude (102 km2), and at both sites low-head dams were removed (~3–4 m) and ~65 000 m3 of sand-sized sediments were discharged to low-gradient reaches. Analyzing four years of repeat morphometry and sediment surveys at the Simkins site, as well as continuous discharge and turbidity data, we observed the two-phase erosion response described for MVD. In the early phase, approximately 50% of the impounded sediment at Simkins was eroded rapidly during modest flows. After incision to base level and widening, a second phase began when further erosion depended on floods large enough to go over bank and access impounded sediments more distant from the newly-formed channel. Fitting functional forms to the data for both sites, we found that two-phase exponential models with changing decay constants fit the erosion data better than single-phase models. Valley width influences the two-phase erosion responses upstream, but downstream responses appear more closely related to local gradient, sediment re-supply from the upstream impoundments, and base flows.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70030804','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70030804"><span>Effects of imposed salinity gradients on dissimilatory arsenate reduction, sulfate reduction, and other microbial processes in sediments from two California soda lakes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Kulp, T.R.; Han, S.; Saltikov, C.W.; Lanoil, B.D.; Zargar, K.; Oremland, R.S.</p> <p>2007-01-01</p> <p>Salinity effects on microbial community structure and on potential rates of arsenate reduction, arsenite oxidation, sulfate reduction, denitrification, and methanogenesis were examined in sediment slurries from two California soda lakes. We conducted experiments with Mono Lake and Searles Lake sediments over a wide range of salt concentrations (25 to 346 g liter-1). With the exception of sulfate reduction, rates of all processes demonstrated an inverse relationship to total salinity. However, each of these processes persisted at low but detectable rates at salt saturation. Denaturing gradient gel electrophoresis analysis of partial 16S rRNA genes amplified from As(V) reduction slurries revealed that distinct microbial populations grew at low (25 to 50 g liter-1), intermediate (100 to 200 g liter-1), and high (>300 g liter-1) salinity. At intermediate and high salinities, a close relative of a cultivated As-respiring halophile was present. These results suggest that organisms adapted to more dilute conditions can remain viable at high salinity and rapidly repopulate the lake during periods of rising lake level. In contrast to As reduction, sulfate reduction in Mono Lake slurries was undetectable at salt saturation. Furthermore, sulfate reduction was excluded from Searles Lake sediments at any salinity despite the presence of abundant sulfate. Sulfate reduction occurred in Searles Lake sediment slurries only following inoculation with Mono Lake sediment, indicating the absence of sulfate-reducing flora. Experiments with borate-amended Mono Lake slurries suggest that the notably high (0.46 molal) concentration of borate in the Searles Lake brine was responsible for the exclusion of sulfate reducers from that ecosystem. Copyright ?? 2007, American Society for Microbiology. All Rights Reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016JGRG..121.1632Z','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016JGRG..121.1632Z"><span>Shifts in the community structure and activity of anaerobic ammonium oxidation bacteria along an estuarine salinity gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Zheng, Yanling; Jiang, Xiaofen; Hou, Lijun; Liu, Min; Lin, Xianbiao; Gao, Juan; Li, Xiaofei; Yin, Guoyu; Yu, Chendi; Wang, Rong</p> <p>2016-06-01</p> <p>Anaerobic ammonium oxidation (anammox) is a major microbial pathway for nitrogen (N) removal in estuarine and coastal environments. However, understanding of anammox bacterial dynamics and associations with anammox activity remains scarce along estuarine salinity gradient. In this study, the diversity, abundance, and activity of anammox bacteria, and their potential contributions to total N2 production in the sediments along the salinity gradient (0.1-33.8) of the Yangtze estuarine and coastal zone, were studied using 16S rRNA gene clone library, quantitative polymerase chain reaction assay, and isotope-tracing technique. Phylogenetic analysis showed a significant change in anammox bacterial community structure along the salinity gradient (P < 0.01), with the dominant genus shifting from Brocadia in the freshwater region to Scalindua in the open ocean. Anammox bacterial abundance ranged from 3.67 × 105 to 8.22 × 107 copies 16S rRNA gene g-1 and related significantly with salinity (P < 0.05). The anammox activity varied between 0.08 and 6.46 nmol N g-1 h-1 and related closely with anammox bacterial abundance (P < 0.01). Contributions of anammox activity to total N loss were highly variable along the salinity gradient, ranging from 5 to 77% and were significantly negatively correlated with salinity (P < 0.01). Sediment organic matter was also recognized as an important factor in controlling the relative role of anammox to total N2 production in the Yangtze estuarine and coastal zone. Overall, our data demonstrated a biogeographical distribution of anammox bacterial diversity, abundance, and activity along the estuarine salinity gradient and suggested that salinity is a major environmental control on anammox process in the estuarine and coastal ecosystems.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2190122','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2190122"><span>Multiple sedimenting species of properdin in human serum and interaction of purified properdin with the third component of complement</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p></p> <p>1976-01-01</p> <p>Normal human serum subjected to sucrose density gradient analysis exhibited multiple sedimenting species of properdin antigen. Properdin antigen distribution was dependent on serum concentration, ionic strength, temperature, and the presence of C3, and was not dependent on the presence of divalent metal cations or blood coagulation. In mixtures of purified components, properdin sedimented heavier in the presence of C3, C3b, or C3c. Addition of factor B to mixtures containing C3 and properdin was without effect. These data provide insights into earlier discrepancies concerning the sedimentation behavior of partially purified properdin, indicate a propensity of some constituents of the alternative pathway to form protein-protein complexes, and suggest caution in interpretation of immunopathological studies in which properdin deposits are found in the presence of C3. PMID:2647</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70027574','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70027574"><span>Geochemical constraints on the distribution of gas hydrates in the Gulf of Mexico</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Paull, C.K.; Ussler, W.; Lorenson, T.; Winters, W.; Dougherty, J.</p> <p>2005-01-01</p> <p>Gas hydrates are common within near-seafloor sediments immediately surrounding fluid and gas venting sites on the continental slope of the northern Gulf of Mexico. However, the distribution of gas hydrates within sediments away from the vents is poorly documented, yet critical for gas hydrate assessments. Porewater chloride and sulfate concentrations, hydrocarbon gas compositions, and geothermal gradients obtained during a porewater geochemical survey of the northern Gulf of Mexico suggest that the lack of bottom simulating reflectors in gas-rich areas of the gulf may be the consequence of elevated porewater salinity, geothermal gradients, and microbial gas compositions in sediments away from fault conduits. </p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_3");'>3</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li class="active"><span>5</span></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_5 --> <div id="page_6" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li class="active"><span>6</span></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="101"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23174915','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23174915"><span>Analysis of magnetic gradients to study gravitropism.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hasenstein, Karl H; John, Susan; Scherp, Peter; Povinelli, Daniel; Mopper, Susan</p> <p>2013-01-01</p> <p>Gravitropism typically is generated by dense particles that respond to gravity. Experimental stimulation by high-gradient magnetic fields provides a new approach to selectively manipulate the gravisensing system. The movement of corn, wheat, and potato starch grains in suspension was examined with videomicroscopy during parabolic flights that generated 20 to 25 s of weightlessness. During weightlessness, a magnetic gradient was generated by inserting a wedge into a uniform, external magnetic field that caused repulsion of starch grains. The resultant velocity of movement was compared with the velocity of sedimentation under 1 g conditions. The high-gradient magnetic fields repelled the starch grains and generated a force of at least 0.6 g. Different wedge shapes significantly affected starch velocity and directionality of movement. Magnetic gradients are able to move diamagnetic compounds under weightless or microgravity conditions and serve as directional stimulus during seed germination in low-gravity environments. Further work can determine whether gravity sensing is based on force or contact between amyloplasts and statocyte membrane system.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFM.H41E1492C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFM.H41E1492C"><span>Spatial Patterns of Road-Induced Backwater Sediment Storage Across A Rural to Urban Gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Copeland, M.; Bain, D.</p> <p>2017-12-01</p> <p>Road networks dominate many landscapes and often interact with stream networks to alter basin sediment dynamics. Currently, conceptual models of catchment-scale sediment fluxes remain at a coarse scale (i.e., the entire catchment) and are unable to resolve important human-driven sediment storage processes. The spatio-temporal complexity of the interactions between road networks and streams has made it challenging to infer the fine-scale impacts of road crossings on fluvial systems. Here, road crossings in multiple drainage networks and the associated backwater sediment accumulations are examined along a rural to urban gradient around Pittsburgh, PA. Preliminary results indicate that upstream drainage area, channel slope, and human activities control stream crossing type and therefore drive associated sediment accumulation, particularly in urban headwater channels. The data indicate that the combination of land use intensity and infrastructure age influences the volume of sediment trapped in road-induced backwaters. Clarification of the coupled human, road-building, and natural stream adjustments will allow for more effective treatments of fluvial impacts, such as the "urban stream syndrome."</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26409652','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26409652"><span>Assessment of sediment toxicity in the Lagoon of Venice (Italy) using a multi-species set of bioassays.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Picone, Marco; Bergamin, Martina; Losso, Chiara; Delaney, Eugenia; Arizzi Novelli, Alessandra; Ghirardini, Annamaria Volpi</p> <p>2016-01-01</p> <p>Within the framework of a Weight of Evidence (WoE) approach, a set of four toxicity bioassays involving the amphipod Corophium volutator (10 d lethality test on whole sediment), the sea urchin Paracentrotus lividus (fertilization and embryo toxicity tests on elutriate) and the pacific oyster Crassostrea gigas (embryo toxicity test on elutriate) was applied to sediments from 10 sampling sites of the Venice Lagoon (Italy). Sediments were collected during three campaigns carried out in May 2004 (spring campaign), October 2004 (autumn campaign) and February 2005 (winter campaign). Toxicity tests were performed on all sediment samples. Sediment grain-size and chemistry were measured during spring and autumn campaigns. This research investigated (i) the ability of toxicity tests in discriminating among sites with different contamination level, (ii) the occurrence of a gradient of effect among sampling sites, (iii) the possible correlation among toxicity tests, sediment chemistry, grain size and organic carbon, and (iv) the possible occurrence of toxicity seasonal variability. Sediment contamination levels were from low to moderate. No acute toxicity toward amphipods was observed, while sea urchin fertilization was affected only in few sites in just a single campaign. Short-term effects on larval development of sea urchin and oyster evidenced a clear spatial trend among sites, with increasing effects along the axis connecting the sea-inlets with the industrial area. The set of bioassays allowed the identification of a spatial gradient of effect, with decreasing toxicity from the industrial area toward the sea-inlets. Multivariate data analysis showed that the malformations of oyster embryos were significantly correlated to the industrial contamination (metals, polynuclear aromatic hydrocarbons, hexachlorobenzene and polychlorinated biphenyls), while sea urchin development to sediment concentrations of As, Cr and organic carbon. Both embryo toxicity tests were significantly affected by high ammonia concentrations found in the elutriates extracted from some mudflat and industrial sediments. No significant temporal variation of the toxicity was observed within the experimental period. Amendments to the set of bioassays, with inclusion of chronic tests, can certainly provide more reliability and consistency to the characterization of the (possible) toxic effects. Copyright © 2015 Elsevier Inc. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010AGUFM.H43E1298H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010AGUFM.H43E1298H"><span>Human alterations, dynamic equilibrium, and riparian ecosystem responses along selected rivers in Tuscany, Italy (Invited)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hupp, C. R.; Rinaldi, M.</p> <p>2010-12-01</p> <p>Many, if not most, streams have been mildly to severely affected by human disturbance, which complicates efforts to understand riparian ecosystems. Mediterranean regions have a long history of human influences including: dams, stream channelization, mining of sediment, and levee /canal construction. Typically these alterations reduce the ecosystem services that functioning floodplains provide and may negatively impact the natural ecology of floodplains through reductions in suitable habitats, biodiversity, and nutrient cycling. Additionally, human alterations typically shift affected streams away from a state of natural dynamic equilibrium, where net sediment deposition is approximately in balance with net erosion. Lack of equilibrium typically affects the degree to which floodplain ecosystems are connected to streamflow regime. Low connectivity, usually from human- or climate-induced incision, may result in reduced flow on floodplains and lowered water tables. High connectivity may result in severe sediment deposition. Connectivity has a direct impact on vegetation communities. Riparian vegetation distribution patterns and diversity relative to various fluvial geomorphic channel patterns, landforms, and processes are described and interpreted for selected rivers of Tuscany, Central Italy; with emphasis on channel evolution following human impacts. Multivariate analysis reveals distinct quantitative vegetation patterns related to six fluvial geomorphic surfaces. Analysis of vegetation data also shows distinct associations of plants with adjustment processes related to the stage of channel evolution. Plant distribution patterns coincide with disturbance/landform/soil moisture gradients. Species richness increases from channel bed to terrace and on heterogeneous riparian areas, while species richness decreases from moderate to intense incision and from low to intense narrowing. As a feedback mechanism, woody vegetation in particular may facilitate geomorphic recovery of floodplains by affecting sedimentation dynamics. Identification and understanding of critical fluvial parameters related to floodplain connectivity (e.g. stream gradient, grain-size, and hydrography) and spatial and temporal sediment deposition/erosion process trajectories should facilitate management efforts to retain and/or regain important ecosystem services.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.ars.usda.gov/research/publications/publication/?seqNo115=308135','TEKTRAN'); return false;" href="http://www.ars.usda.gov/research/publications/publication/?seqNo115=308135"><span>Pharmaceuticals and organochlorine pesticides in sediments of an urban river in Florida, United States</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ars.usda.gov/research/publications/find-a-publication/">USDA-ARS?s Scientific Manuscript database</a></p> <p></p> <p></p> <p>Purpose Sediments from a rural to urban gradient along the Alafia River in Florida, United States were investigated to determine the risk of environmental contamination with legacy (organochlorine pesticides, OCPs) and new contaminants (pharmaceuticals). Materials and methods Bed sediments (0-10 cm)...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013ECSS..130..179B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013ECSS..130..179B"><span>Integrated quality assessment of sediments from harbour areas in Santos-São Vicente Estuarine System, Southern Brazil</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Buruaem, Lucas Moreira; de Castro, Ítalo Braga; Hortellani, Marcos Antonio; Taniguchi, Satie; Fillmann, Gilberto; Sasaki, Silvio Tarou; Varella Petti, Mônica Angélica; Sarkis, Jorge Eduardo de Souza; Bícego, Márcia Caruso; Maranho, Luciane Alves; Davanso, Marcela Bergo; Nonato, Edmundo Ferraz; Cesar, Augusto; Costa-Lotufo, Leticia Veras; Abessa, Denis Moledo de Souza</p> <p>2013-09-01</p> <p>Santos-São Vicente Estuarine System is a highly populated coastal zone in Brazil and where it is located the major port of Latin America. Historically, port activities, industrial and domestic effluents discharges have constituted the main sources of contaminants to estuarine system. This study aimed to assess the recent status of sediment quality from 5 zones of Port of Santos by applying a lines-of-evidence approach through integrating results of: (1) acute toxicity of whole sediment and chronic toxicity of liquid phases; (2) grain size, organic matter, organic carbon, nitrogen, phosphorus, trace metals, polycyclic aromatic hydrocarbons, linear alkylbenzenes and butyltins; (3) benthic community descriptors. Results revealed a gradient of increasing contamination for metals and organic compounds, alongside with their geochemical carriers. Sediment liquid phases were more toxic compared to whole sediment. Low number of species and individuals indicated the impoverishment of benthic community. The use of site-specific sediment quality guidelines was more appropriate to predict sediment toxicity. The integration of results through Sediment Quality Triad approach and principal component analysis allowed observing the effects of natural stressors and dredging on sediment quality and benthic distribution. Even with recent governmental efforts to control, pollution is still relevant in Port of Santos and a threat to local ecosystems.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70129074','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70129074"><span>Compressional velocities from multichannel refraction arrivals on Georges Bank: northwest Atlantic Ocean</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>McGinnis, L. D.; Otis, R. M.</p> <p>1979-01-01</p> <p>Velocities were obtained from unreversed, refracted arrivals on analog records from a 48‐channel, 3.6-km hydrophone cable (3.89 km from the airgun array to the last hydrophone array). Approximately 200 records were analyzed along 1500 km of ship track on Georges Bank, northwest Atlantic Ocean, to obtain regional sediment velocity distribution to a depth of 1.4 km below sea level. This technique provides nearly continuous coverage of refraction velocities and vertical velocity gradients. Because of the length of the hydrophone cable and the vertical velocity gradients, the technique is applicable only to the Continental Shelf and the shallower parts of the Continental Slope in water depths less than 300 m. Sediment diagenesis, the influence of overburden pressure on compaction, lithology, density, and porosity are inferred from these data. Velocities of the sediment near the water‐sediment interface range from less than 1500 m/sec on the north edge of Georges Bank to 1830 m/sec for glacial deposits in the northcentral part of the bank. Velocity gradients in the upper 400 m range from 1.0km/sec/km(sec−1) on the south edge of the bank to 1.7sec−1 on the north. Minimum gradients of 0.8sec−1 were observed south of Nantucket Island. Velocities and velocity gradients are explained in relation to physical properties of the Cretaceous, Tertiary, and Pleistocene sediments. Isovelocity contours at 100-m/sec intervals are nearly horizontal in the upper 400 m. Isovelocity contours at greater depths show a greater difference from a mean depth because of the greater structural and lithological variation. Bottom densities inferred from the velocities range from 1.7 to 1.9g/cm3 and porosities range from 48 to 62 percent. The most significant factor controlling velocity distribution on Georges Bank is overburden pressure and resulting compaction. From the velocity data we conclude that Georges Bank has been partially overridden by a continental ice sheet.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24673266','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24673266"><span>Diffusive gradients in thin films technique provide robust prediction of metal bioavailability and toxicity in estuarine sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Amato, Elvio D; Simpson, Stuart L; Jarolimek, Chad V; Jolley, Dianne F</p> <p>2014-04-15</p> <p>Many sediment quality assessment frameworks incorporate contaminant bioavailability as a critical factor regulating toxicity in aquatic ecosystems. However, current approaches do not always adequately predict metal bioavailability to organisms living in the oxidized sediment surface layers. The deployment of the diffusive gradients in thin films (DGT) probes in sediments allows labile metals present in pore waters and weakly bound to the particulate phase to be assessed in a time-integrated manner in situ. In this study, relationships between DGT-labile metal fluxes within 5 mm of the sediment-water interface and lethal and sublethal effects to the amphipod Melita plumulosa were assessed in a range of contaminated estuarine sediments during 10-day laboratory-based bioassays. To account for differing toxicities of metals, DGT fluxes were normalized to water (WQG) or sediment quality guidelines or toxicity thresholds specific for the amphipod. The better dose-response relationship appeared to be the one based on WQG-normalized DGT fluxes, which successfully predicted toxicity despite the wide range of metals and large variations in sediment properties. The study indicated that the labile fraction of metals measured by DGT is useful for predicting metal toxicity to benthic invertebrates, supporting the applicability of this technique as a rapid monitoring tool for sediments quality assessments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21704453','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21704453"><span>Three decades of TBT contamination in sediments around a large scale shipyard.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kim, Nam Sook; Shim, Won Joon; Yim, Un Hyuk; Ha, Sung Yong; An, Joon Geon; Shin, Kyung Hoon</p> <p>2011-08-30</p> <p>Tributyltin (TBT) contamination in sediments was investigated in the vicinity of a large-scale shipyard in the years after the implementation of a total ban on the use of TBT based antifouling paints in Korea. Extremely high level of TBT (36,292ng Sn/g) in surface sediment was found at a station in front of a drydock and near surface runoff outfall of the shipyard. TBT concentration in surface sediments of Gohyeon Bay, where the shipyard is located, showed an apparent decreased TBT concentration gradient from the shipyard towards the outer bay. The vertical distribution of TBT contamination derived from a sediment core analysis demonstrated a significant positive correlation (r(2)=0.88; p<0.001) with the annual tonnage of ship-construction in the shipyard within the past three decades. TBT concentrations at six stations surveyed before (2003) and seven years after (2010) the total ban showed no significant differences (p>0.05). Despite the ban on the use of TBT, including ocean going vessels, surface sediments are still being heavily contaminated with TBT, and its levels well exceeded the sediment quality guideline or screening values. Copyright © 2011 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018ECSS..206...87W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018ECSS..206...87W"><span>A three-dimensional cohesive sediment transport model with data assimilation: Model development, sensitivity analysis and parameter estimation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wang, Daosheng; Cao, Anzhou; Zhang, Jicai; Fan, Daidu; Liu, Yongzhi; Zhang, Yue</p> <p>2018-06-01</p> <p>Based on the theory of inverse problems, a three-dimensional sigma-coordinate cohesive sediment transport model with the adjoint data assimilation is developed. In this model, the physical processes of cohesive sediment transport, including deposition, erosion and advection-diffusion, are parameterized by corresponding model parameters. These parameters are usually poorly known and have traditionally been assigned empirically. By assimilating observations into the model, the model parameters can be estimated using the adjoint method; meanwhile, the data misfit between model results and observations can be decreased. The model developed in this work contains numerous parameters; therefore, it is necessary to investigate the parameter sensitivity of the model, which is assessed by calculating a relative sensitivity function and the gradient of the cost function with respect to each parameter. The results of parameter sensitivity analysis indicate that the model is sensitive to the initial conditions, inflow open boundary conditions, suspended sediment settling velocity and resuspension rate, while the model is insensitive to horizontal and vertical diffusivity coefficients. A detailed explanation of the pattern of sensitivity analysis is also given. In ideal twin experiments, constant parameters are estimated by assimilating 'pseudo' observations. The results show that the sensitive parameters are estimated more easily than the insensitive parameters. The conclusions of this work can provide guidance for the practical applications of this model to simulate sediment transport in the study area.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=241540','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=241540"><span>Purification of Giardia muris cysts by velocity sedimentation.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Sauch, J F</p> <p>1984-01-01</p> <p>Giardia muris cysts were separated from fecal contaminants in primary isolates by unit gravity velocity sedimentation. Crude isolates obtained by centrifugation over 1.0 M sucrose were overlaid onto a Percoll density gradient, 1.01 to 1.03 g/ml. G. muris cysts were well separated from faster-sedimenting fecal debris and slower-sedimenting Spironucleus muris and bacteria in 1.5 h. PMID:6486790</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://escholarship.org/uc/item/2m6367vc','USGSPUBS'); return false;" href="http://escholarship.org/uc/item/2m6367vc"><span>Flow convergence caused by a salinity minimum in a tidal channel</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Warner, John C.; Schoellhamer, David H.; Burau, Jon R.; Schladow, S. Geoffrey</p> <p>2006-01-01</p> <p>Residence times of dissolved substances and sedimentation rates in tidal channels are affected by residual (tidally averaged) circulation patterns. One influence on these circulation patterns is the longitudinal density gradient. In most estuaries the longitudinal density gradient typically maintains a constant direction. However, a junction of tidal channels can create a local reversal (change in sign) of the density gradient. This can occur due to a difference in the phase of tidal currents in each channel. In San Francisco Bay, the phasing of the currents at the junction of Mare Island Strait and Carquinez Strait produces a local salinity minimum in Mare Island Strait. At the location of a local salinity minimum the longitudinal density gradient reverses direction. This paper presents four numerical models that were used to investigate the circulation caused by the salinity minimum: (1) A simple one-dimensional (1D) finite difference model demonstrates that a local salinity minimum is advected into Mare Island Strait from the junction with Carquinez Strait during flood tide. (2) A three-dimensional (3D) hydrodynamic finite element model is used to compute the tidally averaged circulation in a channel that contains a salinity minimum (a change in the sign of the longitudinal density gradient) and compares that to a channel that contains a longitudinal density gradient in a constant direction. The tidally averaged circulation produced by the salinity minimum is characterized by converging flow at the bed and diverging flow at the surface, whereas the circulation produced by the constant direction gradient is characterized by converging flow at the bed and downstream surface currents. These velocity fields are used to drive both a particle tracking and a sediment transport model. (3) A particle tracking model demonstrates a 30 percent increase in the residence time of neutrally buoyant particles transported through the salinity minimum, as compared to transport through a constant direction density gradient. (4) A sediment transport model demonstrates increased deposition at the near-bed null point of the salinity minimum, as compared to the constant direction gradient null point. These results are corroborated by historically noted large sedimentation rates and a local maximum of selenium accumulation in clams at the null point in Mare Island Strait.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70032874','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70032874"><span>Hydraulic anisotropy characterization of pneumatic-fractured sediments using azimuthal self potential gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Wishart, D.N.; Slater, L.D.; Schnell, D.L.; Herman, G.C.</p> <p>2009-01-01</p> <p>The pneumatic fracturing technique is used to enhance the permeability and porosity of tight unconsolidated soils (e.g. clays), thereby improving the effectiveness of remediation treatments. Azimuthal self potential gradient (ASPG) surveys were performed on a compacted, unconsolidated clay block in order to evaluate their potential to delineate contaminant migration pathways in a mechanically-induced fracture network. Azimuthal resistivity (ARS) measurements were also made for comparative purposes. Following similar procedures to those used in the field, compressed kaolinite sediments were pneumatically fractured and the resulting fracture geometry characterized from strike analysis of visible fractures combined with strike data from optical borehole televiewer (BHTV) imaging. We subsequently injected a simulated treatment (electrolyte/dye) into the fractures. Both ASPG and ARS data exhibit anisotropic geoelectric signatures resulting from the fracturing. Self potentials observed during injection of electrolyte are consistent with electrokinetic theory and previous laboratory results on a fracture block model. Visual (polar plot) analysis and linear regression of cross plots show ASPG lobes are correlated with azimuths of high fracture strike density, evidence that the ASPG anisotropy is a proxy measure of hydraulic anisotropy created by the pneumatic fracturing. However, ARS data are uncorrelated with fracture strike maxima and resistivity anisotropy is probably dominated by enhanced surface conduction along azimuths of weak 'starter paths' formed from pulverization of the clay and increases in interfacial surface area. We find the magnitude of electrokinetic SP scales with the applied N2 gas pressure gradient (??PN2) for any particular hydraulically-active fracture set and that the positive lobe of the ASPG anomaly indicates the flow direction within the fracture network. These findings demonstrate the use of ASPG in characterizing the effectiveness of (1) pneumatic fracturing and (2) defining likely flow directions of remedial treatments in unconsolidated sediments and rock. ?? 2008 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/759855','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/759855"><span></span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>LAGASSE,ROBERT R.; THOMPSON,KYLE R.</p> <p></p> <p>The goal of this work is to develop techniques for measuring gradients in particle concentration within filled polymers, such as encapsulant. A high concentration of filler particles is added to such materials to tailor physical properties such as thermal expansion coefficient. Sedimentation and flow-induced migration of particles can produce concentration gradients that are most severe near material boundaries. Therefore, techniques for measuring local particle concentration should be accurate near boundaries. Particle gradients in an alumina-filled epoxy resin are measured with a spatial resolution of 0.2 mm using an x-ray beam attenuation technique, but an artifact related to the finite diametermore » of the beam reduces accuracy near the specimen's edge. Local particle concentration near an edge can be measured more reliably using microscopy coupled with image analysis. This is illustrated by measuring concentration profiles of glass particles having 40 {micro}m median diameter using images acquired by a confocal laser fluorescence microscope. The mean of the measured profiles of volume fraction agrees to better than 3% with the expected value, and the shape of the profiles agrees qualitatively with simple theory for sedimentation of monodisperse particles. Extending this microscopy technique to smaller, micron-scale filler particles used in encapsulant for microelectronic devices is illustrated by measuring the local concentration of an epoxy resin containing 0.41 volume fraction of silica.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22182967','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22182967"><span>A sediment ecotoxicity assessment platform for in situ measures of chemistry, bioaccumulation and toxicity. Part 1: System description and proof of concept.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Burton, G Allen; Rosen, Gunther; Chadwick, D Bart; Greenberg, Marc S; Taulbee, W Keith; Lotufo, Guilherme R; Reible, Danny D</p> <p>2012-03-01</p> <p>In situ-based testing using aquatic organisms has been widely reported, but is often limited in scope and practical usefulness in making decisions on ecological risk and remediation. To provide this capability, an integrated deployment system, the Sediment Ecotoxicity Assessment (SEA) Ring was developed, which incorporates rapid in situ hydrological, chemical, bioaccumulation, and toxicological Lines-of-Evidence (LoE) for assessing sediment and overlying water contamination. The SEA Ring system allows for diver-assisted, or diverless, deployment of multiple species of ecologically relevant and indigenous organisms in three different exposures (overlying water, sediment-water interface, and bulk sediment) for periods ranging from two days to three weeks, in a range of water systems. Measured endpoints were both sublethal and lethal effects as well as bioaccumulation. In addition, integrated passive sampling devices for detecting nonpolar organics (solid phase micro-extraction fibers) and metals (diffusive gradients in thin films) provided gradient measures in overlying waters and surficial sediments. Copyright © 2011 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28406515','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28406515"><span>Integration of community structure data reveals observable effects below sediment guideline thresholds in a large estuary.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Tremblay, Louis A; Clark, Dana; Sinner, Jim; Ellis, Joanne I</p> <p>2017-09-20</p> <p>The sustainable management of estuarine and coastal ecosystems requires robust frameworks due to the presence of multiple physical and chemical stressors. In this study, we assessed whether ecological health decline, based on community structure composition changes along a pollution gradient, occurred at levels below guideline threshold values for copper, zinc and lead. Canonical analysis of principal coordinates (CAP) was used to characterise benthic communities along a metal contamination gradient. The analysis revealed changes in benthic community distribution at levels below the individual guideline values for the three metals. These results suggest that field-based measures of ecological health analysed with multivariate tools can provide additional information to single metal guideline threshold values to monitor large systems exposed to multiple stressors.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010AGUFM.B41D0328R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010AGUFM.B41D0328R"><span>Methane fluxes and their controlling processes in the Baltic Sea</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Rehder, G. J.; Fossing, H.; Lapham, L.; Endler, R.; Spiess, V.; Bruchert, V.; Nguyen, T.; Gülzow, W.; Schneider von Deimling, J.; Conley, D. J.; Jorgensen, B.</p> <p>2010-12-01</p> <p>The Baltic Sea is an ideal natural laboratory to study the methane cycle in the framework of diagenetic processes. With its brackish character and a gradient from nearly marine to almost limnic conditions, a strong permanent haline stratification leading to large vertical redox gradients in the water column, and a sedimentation history which resulted in the deposition of organic-rich young post-glacial sediments over older glacial and post-glacial strata with very low organic content, the Baltic allows to study the role of a variety of key parameters for early diagenetic processes including the methane cycle. Within the BONUS + Project “Baltic Gas”, a 3.5 week scientific expedition of RV Maria S. Merian in August 2010 was dedicated to study the methane cycle in the various basins of the Baltic Sea, with strong emphasis on the metabolic reactions of early diagenesis and the occurrence of shallow gas deposits. Various subbottom profiling systems were used to map the thickness and structure of organic-rich deposits and build the base for a detailed coring program for biogeochemical analysis, including methane, sulfur compounds, iron, and other compounds. Methane gradients in connection with the information of the areal extend of organic-rich deposits are used to estimate the diffusive flux from the sediments into the water column and the rate of methane oxidation, with changing importance of sulfate as oxidant along the salinity gradient. On selected key stations, rate measurements of methanogenic and methanotrophic reactions were executed. The methane distribution in the water column was comprehensively assessed, revealing amongst other findings a drastic increase in bottom water methane concentration between the post bloom summer situation and the situation in the winter of 2009, in connection to the occurrence of a benthic nepheloid layer. Air-sea flux measurements were executed along the ship’s track comprising all major basins of the Baltic. The talk gives an interdisciplinary overview of the first results of this research campaign.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/2951603','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/2951603"><span>Effect of fluorodeoxyuridine on the sedimentation of nucleoids from HeLa cells in sucrose gradients.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Synzynys, B I; Brozmanová, J; Saenko, A S</p> <p>1987-01-01</p> <p>Sedimentation properties of nucleoids from HeLa cells cultured for 6 or 24 h with 10(-6) M fluorodeoxyuridine (FdUrd) were studied in neutral sucrose gradients. Independently on the presence and concentrations of ethidium bromide in the gradient, nucleoids from FdUrd treated cells sedimented farther than those from untreated cells. However, the maximum relaxation of supercoiled DNA, observed at the concentration of 5 micrograms/ml of ethidium bromide, was significantly lower in cells treated with FdUrd, which indicated that prior incubation with FdUrd did not increase the degree of DNA supercoiling but altered by some way the conformation of DNA in nucleus. Previously we have found, that treatment of HeLa cells with FdUrd resulted in the stimulation of DNA synthesis, which proved to be resistant to ultraviolet and gamma-irradiation. From the present results it is possible to suggest, that alterations of chromatine structure should be included in facilitating of DNA synthesis on DNA template damaged by ultraviolet or gamma irradiation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23291211','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23291211"><span>Risk assessment of metals in road-deposited sediment along an urban-rural gradient.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhao, Hongtao; Li, Xuyong</p> <p>2013-03-01</p> <p>We applied the traditional risk assessment methods originally designed for soils and river sediments to evaluation of risk associated with metals in road-deposited sediment (RDS) along an urban-rural gradient that included central urban (UCA), urban village (UVA), central suburban county (CSA), rural town (RTA), and rural village (RVA) areas in the Beijing metropolitan region. A new indicator RI(RDS) was developed which integrated the RDS characteristics of mobility, grain size and amount with the potential ecological risk index. The risk associated with metals in RDS in urban areas was generally higher than that in rural areas based on the assessment using traditional methods, but the risk was higher in urban and rural village areas than the areas with higher administration units based on the indicator RI(RDS). These findings implied that RDS characteristics variation with the urban-rural gradient must be considered in metal risk assessment and RDS washoff pollution control. Copyright © 2012 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008Geomo.101..172H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008Geomo.101..172H"><span>Scale linkage and contingency effects of field-scale and hillslope-scale controls of long-term soil erosion: Anthropogeomorphic sediment flux in agricultural loess watersheds of Southern Germany</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Houben, Peter</p> <p>2008-10-01</p> <p>Agricultural landscapes with a millennial-scale history of cultivation are common in many loess areas of central Europe. Over time, patterns of erosion and sedimentation have been continually modified via the variable imposition of anthropogenic discontinuities and linkages on fragmented hillslope sediment cascades, which eventually caused the complicated soilscape pattern. These field records challenge topographically oriented models of hillslope erosion and simple predictions of longer-term change of spatial soilscape by cultivation activities. A thorough understanding how soilscape patterns form in the long-term, however, is essential to develop spatial concepts of the sediment budget, particularly for the spatial modeling of anthropogenic hillslope sediment flux using GIS. In this study I used extensive datasets of anthropogenic soil truncation and burial in a typical undulating loess watershed in southern Germany (10 km 2, Wetterau Basin, N of Frankfurt a.M.). Spatial soilscape properties and historic sediment flux, as caused by cultivation over seven millennia, were evaluated by these data. The soilscape pattern on the low-gradient hillslopes of the study area was found to be marked by a statistical near-random pattern of varying depth (thickness) of truncation and overthickened burial. Moreover, it was shown that truncation and burial had developed independently from each other and did not correlate with either hillslope gradient or downslope curvature. Hence, in the field any combination of (few) nearly preserved, severely truncated or completely removed soil profiles with either no, some or a thick sediment cover is present, thereby lacking an obvious spatial pattern. Here, I suggest putting long-term change of the soilscape into a contextual anthropogeomorphic systems perspective, that accommodates components of human-induced soil erosion operating at different spatial scales to interpret the longer-term spatial consequences at the hillslope-system level. In the study area, system scale linkages are marked by the spatial intersection of a finer-scaled managed field system with a broader hillslope-scale framework of 'natural' erosion controls. In the low-gradient study area, field borders exert control over the spatial reference of soil erosion and sedimentation sites. Over time, this brought about a growing historical and spatial contingency change to the soilscape, because of arbitrary spatial changes of the field system which are inherent in its socio-agricultural maintenance. Thus, the very low-gradient and low-erosivity setting of the study area have singled out the agency of human-induced spatial and connectivity controls and contingency for long-term spatial hillslope sediment flux. Although these findings may be less true for different settings, they allow for deriving a generic conceptual model of the linkages between 'natural' and anthropogenic subsystems to interpret the effects of long-term human-induced sediment flux. Accordingly, the resulting balance between on-hillslope net storage and net delivery to streams is scaling with basic physiographic properties of erosivity and sedimentation as well as the degree of anthropogenic hillslope fragmentation. For loess areas in Europe variable fields are fundamental anthropogeomorphic units that determine appropriate system scaling for historic sediment flux analysis and constrain retrodiction and prediction of changing fluxes at a point and a time at watershed scales. Methodical implications address adequate sampling strategies to record soilscape change, as a result of which a critical review of the applicability of the catena concept to long-cultivated hillslopes in central Europe was included. Finally, the suggested refined generic model of long-term, human-controlled sediment flux involves a number of research opportunities, particularly for linking modeling approaches to long-term field records of cultivation-related change in the soilscape.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_4");'>4</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li class="active"><span>6</span></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_6 --> <div id="page_7" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li class="active"><span>7</span></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="121"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2003JHyd..284...92T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2003JHyd..284...92T"><span>Vertical groundwater flow in Permo-Triassic sediments underlying two cities in the Trent River Basin (UK)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Taylor, R. G.; Cronin, A. A.; Trowsdale, S. A.; Baines, O. P.; Barrett, M. H.; Lerner, D. N.</p> <p>2003-12-01</p> <p>The vertical component of groundwater flow that is responsible for advective penetration of contaminants in sandstone aquifers is poorly understood. This lack of knowledge is of particular concern in urban areas where abstraction disrupts natural groundwater flow regimes and there exists an increased density of contaminant sources. Vertical hydraulic gradients that control vertical groundwater flow were investigated using bundled multilevel piezometers and a double-packer assembly in dedicated boreholes constructed to depths of between 50 and 92 m below ground level in Permo-Triassic sediments underlying two cities within the Trent River Basin of central England (Birmingham, Nottingham). The hydrostratigraphy of the Permo-Triassic sediments, indicated by geophysical logging and hydraulic (packer) testing, demonstrates considerable control over observed vertical hydraulic gradients and, hence, vertical groundwater flow. The direction and magnitude of vertical hydraulic gradients recorded in multilevel piezometers and packers are broadly complementary and range, within error, from +0.1 to -0.7. Groundwater is generally found to flow vertically toward transmissive zones within the hydrostratigraphical profile though urban abstraction from the Sherwood Sandstone aquifer also influences observed vertical hydraulic gradients. Bulk, downward Darcy velocities at two locations affected by abstraction are estimated to be in the order of several metres per year. Consistency in the distribution of hydraulic head with depth in Permo-Triassic sediments is observed over a one-year period and adds support the deduction of hydrostratigraphic control over vertical groundwater flow.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70022363','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70022363"><span>Influence of acid volatile sulfides and metal concentrations on metal partitioning in contaminated sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Lee, J.-S.; Lee, B.-G.; Luoma, S.N.; Choi, H.J.; Koh, C.-H.; Brown, C.L.</p> <p>2000-01-01</p> <p>The influence of acid volatile sulfide (AVS) on the partitioning of Cd, Ni, and Zn in porewater (PW) and sediment as reactive metals (SEM, simultaneously extracted metals) was investigated in laboratory microcosms. Two spiking procedures were compared, and the effects of vertical geochemical gradients and infaunal activity were evaluated. Sediments were spiked with a Cd-Ni-Zn mixture (0.06, 3, 7.5 ??mol/g, respectively) containing four levels of AVS (0.5, 7.5, 15, 35 ??mol/g). The results were compared to sediments spiked with four levels of Cd-Ni-Zn mixtures at one AVS concentration (7.5 ??mol/g). A vertical redox gradient was generated in each treatment by an 18-d incubation with an oxidized water column. [AVS] in the surface sediments decreased by 65-95% due to oxidation during incubation; initial [AVS] was maintained at 0.5-7.5 cm depth. PW metal concentrations were correlated with [SEM - AVS] among all data. But PW metal concentrations were variable, causing the distribution coefficient, Kd(pw) (the ratio of [SEM] to PW metal concentrations) to vary by 2-3 orders of magnitude at a given [SEM - AVS]. One reason for the variability was that vertical profiles in PW metal concentrations appeared to be influenced by diffusion as well as [SEM - AVS]. The presence of animals appeared to enhance the diffusion of at least Zn. The generalization that PW metal concentrations are controlled by [SEM - AVS] is subject to some important qualifications if vertical gradients are complicated, metal concentrations vary, or equilibration times differ.The influence of acid volatile sulfide (AVS) on the partitioning of Cd, Ni, and Zn in porewater (PW) and sediment as reactive metals (SEM, simultaneously extracted metals) was investigated in laboratory microcosms. Two spiking procedures were compared, and the effects of vertical geochemical gradients and infaunal activity were evaluated. Sediments were spiked with a Cd-Ni-Zn mixture (0.06, 3, 7.5 ??mol/g, respectively) containing four levels of AVS (0.5, 7.5, 15, 35 ??mol/g). The results were compared to sediments spiked with four levels of Cd-Ni-Zn mixtures at one AVS concentration (7.5 ??mol/g). A vertical redox gradient was generated in each treatment by an 18-d incubation with an oxidized water column. [AVS] in the surface sediments decreased by 65-95% due to oxidation during incubation; initial [AVS] was maintained at 0.5-7.5 cm depth. PW metal concentrations were correlated with [SEM - AVS] among all data. But PW metal concentrations were variable, causing the distribution coefficient, Kdpw (the ratio of [SEM] to PW metal concentrations) to vary by 2-3 orders of magnitude at a given [SEM - AVS]. One reason for the variability was that vertical profiles in PW metal concentrations appeared to be influenced by diffusion as well as [SEM - AVS]. The presence of animals appeared to enhance the diffusion of at least Zn. The generalization that PW metal concentrations are controlled by [SEM - AVS] is subject to some important qualifications if vertical gradients are complicated, metal concentrations vary, or equilibration times differ.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25965884','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25965884"><span>Pre-treatments, characteristics, and biogeochemical dynamics of dissolved organic matter in sediments: A review.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Chen, Meilian; Hur, Jin</p> <p>2015-08-01</p> <p>Dissolved organic matter (DOM) in sediments, termed here sediment DOM, plays a variety of important roles in global biogeochemical cycling of carbon and nutrients as well as in the fate and transport of xenobiotics. Here we reviewed sediment DOM, including pore waters and water extractable organic matter from inland and coastal sediments, based on recent literature (from 1996 to 2014). Sampling, pre-treatment, and characterization methods for sediment DOM were summarized. The characteristics of sediment DOM have been compared along an inland to coastal ecosystems gradient and also with the overlying DOM in water column to distinguish the unique nature of it. Dissolved organic carbon (DOC) from inland sediment DOM was generally higher than coastal areas, while no notable differences were found for their aromaticity and apparent molecular weight. Fluorescence index (FI) revealed that mixed sources are dominant for inland sediment DOM, but marine end-member prevails for coastal sediment DOM. Many reports showed that sediments operate as a net source of DOC and chromophoric DOM (CDOM) to the water column. Sediment DOM has shown more enrichment of nitrogen- and sulfur-containing compounds in the elemental signature than the overlying DOM. Fluorescent fingerprint investigated by excitation-emission matrix coupled with parallel factor analysis (EEM-PARAFAC) further demonstrated the characteristics of sediment DOM lacking in the photo-oxidized and the intermediate components, which are typically present in the overlying surface water. In addition, the biogeochemical changes in sediment DOM and the subsequent environmental implications were discussed with the focus on the binding and the complexation properties with pollutants. Copyright © 2015 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22120124','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22120124"><span>Biofilm formation and microbial community analysis of the simulated river bioreactor for contaminated source water remediation.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Xu, Xiang-Yang; Feng, Li-Juan; Zhu, Liang; Xu, Jing; Ding, Wei; Qi, Han-Ying</p> <p>2012-06-01</p> <p>The start-up pattern of biofilm remediation system affects the biofilm characteristics and operating performances. The objective of this study was to evaluate the performances of the contaminated source water remediation systems with different start-up patterns in view of the pollutants removal performances and microbial community succession. The operating performances of four lab-scale simulated river biofilm reactors were examined which employed different start-up methods (natural enrichment and artificial enhancement via discharging sediment with influent velocity gradient increase) and different bio-fillers (Elastic filler and AquaMats® ecobase). At the same time, the microbial communities of the bioreactors in different phases were analyzed by polymerase chain reaction, denaturing gradient gel electrophoresis, and sequencing. The pollutants removal performances became stable in the four reactors after 2 months' operation, with ammonia nitrogen and permanganate index (COD(Mn)) removal efficiencies of 84.41-94.21% and 69.66-76.60%, respectively. The biomass of mature biofilm was higher in the bioreactors by artificial enhancement than that by natural enrichment. Microbial community analysis indicated that elastic filler could enrich mature biofilm faster than AquaMats®. The heterotrophic bacteria diversity of biofilm decreased by artificial enhancement, which favored the ammonia-oxidizing bacteria (AOB) developing on the bio-fillers. Furthermore, Nitrosomonas- and Nitrosospira-like AOB coexisted in the biofilm, and Pseudomonas sp., Sphaerotilus sp., Janthinobacterium sp., Corynebacterium aurimucosum were dominant in the oligotrophic niche. Artificial enhancement via the combination of sediment discharging and influent velocity gradient increasing could enhance the biofilm formation and autotrophic AOB enrichment in oligotrophic niche.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27766436','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27766436"><span>Kinetic and microbial community analysis of methyl ethyl ketone biodegradation in aquifer sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Fahrenfeld, N; Pruden, A; Widdowson, M</p> <p>2017-02-01</p> <p>Methyl ethyl ketone (MEK) is a common groundwater contaminant often present with more toxic compounds of primary interest. Because of this, few studies have been performed to determine the effect of microbial community structure on MEK biodegradation rates in aquifer sediments. Here, microcosms were prepared with aquifer sediments containing MEK following a massive spill event and compared to laboratory-spiked sediments, with MEK biodegradation rates quantified under mixed aerobic/anaerobic conditions. Biodegradation was achieved in MEK-contaminated site sediment microcosms at about half of the solubility (356 mg/L) with largely Firmicutes population under iron-reducing conditions. MEK was biodegraded at a higher rate [4.0 ± 0.74 mg/(L days)] in previously exposed site samples compared to previously uncontaminated sediments [0.51 ± 0.14 mg/(L days)]. Amplicon sequencing and denaturing gradient gel electrophoresis of 16S rRNA genes were combined to understand the relationship between contamination levels, biodegradation, and community structure across the plume. More heavily contaminated sediments collected from an MEK-contaminated field site had the most similar communities than less contaminated sediments from the same site despite differences in sediment texture. The more diverse microbial community observed in the laboratory-spiked sediments reduced MEK concentration 47 % over 92 days. Results of this study suggest lower rates of MEK biodegradation in iron-reducing aquifer sediments than previously reported for methanogenic conditions and biodegradation rates comparable to previously reported nitrate- and sulfate-reducing conditions.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70186672','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70186672"><span>Observations and 3D hydrodynamics-based modeling of decadal-scale shoreline change along the Outer Banks, North Carolina</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Safak, Ilgar; List, Jeffrey; Warner, John C.; Kumar, Nirnimesh</p> <p>2017-01-01</p> <p>Long-term decadal-scale shoreline change is an important parameter for quantifying the stability of coastal systems. The decadal-scale coastal change is controlled by processes that occur on short time scales (such as storms) and long-term processes (such as prevailing waves). The ability to predict decadal-scale shoreline change is not well established and the fundamental physical processes controlling this change are not well understood. Here we investigate the processes that create large-scale long-term shoreline change along the Outer Banks of North Carolina, an uninterrupted 60 km stretch of coastline, using both observations and a numerical modeling approach. Shoreline positions for a 24-yr period were derived from aerial photographs of the Outer Banks. Analysis of the shoreline position data showed that, although variable, the shoreline eroded an average of 1.5 m/yr throughout this period. The modeling approach uses a three-dimensional hydrodynamics-based numerical model coupled to a spectral wave model and simulates the full 24-yr time period on a spatial grid running on a short (second scale) time-step to compute the sediment transport patterns. The observations and the model results show similar magnitudes (O(105 m3/yr)) and patterns of alongshore sediment fluxes. Both the observed and the modeled alongshore sediment transport rates have more rapid changes at the north of our section due to continuously curving coastline, and possible effects of alongshore variations in shelf bathymetry. The southern section with a relatively uniform orientation, on the other hand, has less rapid transport rate changes. Alongshore gradients of the modeled sediment fluxes are translated into shoreline change rates that have agreement in some locations but vary in others. Differences between observations and model results are potentially influenced by geologic framework processes not included in the model. Both the observations and the model results show higher rates of erosion (∼−1 m/yr) averaged over the northern half of the section as compared to the southern half where the observed and modeled averaged net shoreline changes are smaller (<0.1 m/yr). The model indicates accretion in some shallow embayments, whereas observations indicate erosion in these locations. Further analysis identifies that the magnitude of net alongshore sediment transport is strongly dominated by events associated with high wave energy. However, both big- and small- wave events cause shoreline change of the same order of magnitude because it is the gradients in transport, not the magnitude, that are controlling shoreline change. Results also indicate that alongshore momentum is not a simple balance between wave breaking and bottom stress, but also includes processes of horizontal vortex force, horizontal advection and pressure gradient that contribute to long-term alongshore sediment transport. As a comparison to a more simple approach, an empirical formulation for alongshore sediment transport is used. The empirical estimates capture the effect of the breaking term in the hydrodynamics-based model, however, other processes that are accounted for in the hydrodynamics-based model improve the agreement with the observed alongshore sediment transport.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018Geomo.303..299C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018Geomo.303..299C"><span>The relative contribution of near-bed vs. intragravel horizontal transport to fine sediment accumulation processes in river gravel beds</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Casas-Mulet, Roser; Lakhanpal, Garima; Stewardson, Michael J.</p> <p>2018-02-01</p> <p>Understanding flow-sediment interactions is important for comprehending river functioning. Fine sediment accumulation processes, in particular, have key implications for ecosystem health. However, the amount of fines generated by intragravel flows and later accumulated in gravel streambeds may have been underestimated, as the hydraulic-related driving transport mechanisms in play are not clearly identified. Specifically, the relative contribution of fines from upper vs. lower sediment layers in gravel beds is not well understood. By recreating flooded and dewatered conditions in an experimental flume filled with natural sediment, we estimated such contributions by observing and collecting intragravel transported fines that were later accumulated into a void in the middle of the sediment matrix. Near-bed transport in the upper sediment layers (named Brinkman load) during flooded conditions accounted for most (90%) of the accumulated fines. Intragravel transport in the lower sediment layers (named Interstitial load) was the sole source of transport and accumulation during dewatered conditions with steeper hydraulic gradients. Interstitial load accounted for 10% of the total transport during flooded conditions. Although small, such estimations demonstrate that hydraulic-gradient transport in the lower sediment layers occurs in spite of the contradicting analytical assessments. We provide a case study to challenge the traditional approaches of assessing intragravel transport, and a useful framework to understand the origin and relative contribution of fine sediment accumulation in gravel beds. Such knowledge will be highly useful for the design of monitoring programs aiding river management, particularly in regulated rivers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFMEP53A3608G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFMEP53A3608G"><span>Spatial gradients in stream power and the implications for lateral and downstream transport of material during the 2013 Floods in Colorado and 2011 Irene Floods in Vermont, USA</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Gartner, J. D.; Renshaw, C. E.; Magilligan, F. J.; Buraas, E. M.; Dethier, E.; Dade, W. B.</p> <p>2014-12-01</p> <p>Classic approaches to understand sediment transport and channel-hillslope coupling focus on magnitudes of forces at a point location or reach. Yet often overlooked are downstream gradients in forces along a river. Here we show a physical rationale supported by field evidence that downstream spatial gradients in sediment transport capacity affect lateral exchange of material in the form of landslides, bank failures and floodplain deposition. Taking advantage of the strong signals of near-channel deposition and erosion during the record-high 2011 Irene floods in Vermont and 2013 floods in Colorado, USA, we test if these spatial gradients can predict geomorphic response in flood events. Total stream power, an indicator of total sediment transport capacity, was mapped using GIS analysis along the Saxtons River (190 km2) and West Branch of White River (112 km2) in Vermont and Fourmile Creek (20 km2) and an unnamed creek on Mt Sanitas (7 km2) in Boulder, CO. These mountainous streams exhibit reach slopes of 0.5 to > 10%, with less steep reaches interspersed among steeper reaches. Near-channel erosion and deposition were quantified along 52 river km by pre/post satellite imagery, field surveys, and, when available, differencing of pre/post topography measured by aerial LiDAR. Zones of abundant mass wasting inputs—up to 11,000 m3 per km—were generally distinct from zones of abundant floodplain deposition—up to 30,000 m3 per km. Spatial patterns indicate that zones of abundant mass wasting into the channels align approximately with zones of down-flow increasing stream power. These reaches can convey material delivered from upstream plus additional lateral inputs of sediment. Conversely, reaches of abundant lateral flux out of the channel via near-channel deposition occur predominantly where mapped total stream power declines in the down-flow direction. These reaches appear unable to convey material supplied from upstream, which induces lateral deposition. The demonstrated interaction between downstream and lateral fluxes of material provides insight on physical controls on broad-scale geomorphic processes at channel margins as well as the sources and fates of matter transported by rivers, with implications for flood recovery and long-term river management.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009HydJ...17..519C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009HydJ...17..519C"><span>A new method for mapping variability in vertical seepage flux in streambeds</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Chen, Xunhong; Song, Jinxi; Cheng, Cheng; Wang, Deming; Lackey, Susan O.</p> <p>2009-05-01</p> <p>A two-step approach was used to measure the flux across the water-sediment interface in river channels. A hollow tube was pressed into the streambed and an in situ sediment column of the streambed was created inside the tube. The hydraulic gradient between the two ends of the sediment column was measured. The vertical hydraulic conductivity of the sediment column was determined using a falling-head permeameter test in the river. Given the availability of the hydraulic gradient and vertical hydraulic conductivity of the streambed, Darcy’s law was used to calculate the specific discharge. This approach was applied to the Elkhorn River and one tributary in northeastern Nebraska, USA. The results suggest that the magnitude of the vertical flux varied greatly within a short distance. Furthermore, the flux can change direction from downward to upward between two locations only several meters apart. This spatial pattern of variation probably represents the inflow and outflow within the hyporheic zone, not the regional ambient flow systems. In this study, a thermal infrared camera was also used to detect the discharge locations of groundwater in the streambed. After the hydraulic gradient and the vertical hydraulic conductivity were estimated from the groundwater spring, the discharge rate was calculated.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=431634','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=431634"><span>Supercoiled circular DNA of an insect granulosis virus</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Tweeten, Kathleen A.; Bulla, Lee A.; Consigli, Richard A.</p> <p>1977-01-01</p> <p>The DNA of the granulosis virus of the Indian meal moth, Plodia interpunctella, was characterized by physical chemical and electron microscopic techniques. Twenty-five percent of the DNA extracted from purified virus was isolated as supercoiled circular molecules. The remaining 75% consisted of relaxed circular molecules. These molecular forms were indicated by the production of two radioactive bands during sedimentation of 3H-labeled granulosis virus DNA in alkaline sucrose gradients or in equilibrium density gradients of neutral cesium chloride/propidium iodide. Electron microscopic visualization of the DNA that banded at the higher density in the latter gradients revealed supercoiled structures whereas that of DNA that banded at the lower density demonstrated relaxed circular molecules. The superhelical molecules were converted to relaxed circles by treatment with pancreatic DNase. The molecular weight of the viral DNA was calculated to be 81 × 106 by sedimentation in neutral sucrose and 78 × 106 by sedimentation in alkaline sucrose. The molecular weight estimated from length measurements in electron micrographs was 76 × 106. The buoyant density of the granulosis virus DNA was 1.703 g/cm3 and that of its insect host DNA was 1.697 g/cm3. Equilibrium sedimentation in cesium chloride and thermal denaturation indicated G + C contents of 44% and 39% for the viral and host DNA, respectively. Images PMID:198791</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/198791','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/198791"><span>Supercoiled circular DNA of an insect granulosis virus.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Tweeten, K A; Bulla, L A; Consigli, R A</p> <p>1977-08-01</p> <p>The DNA of the granulosis virus of the Indian meal moth, Plodia interpunctella, was characterized by physical chemical and electron microscopic techniques. Twenty-five percent of the DNA extracted from purified virus was isolated as supercoiled circular molecules. The remaining 75% consisted of relaxed circular molecules. These molecular forms were indicated by the production of two radioactive bands during sedimentation of (3)H-labeled granulosis virus DNA in alkaline sucrose gradients or in equilibrium density gradients of neutral cesium chloride/propidium iodide. Electron microscopic visualization of the DNA that banded at the higher density in the latter gradients revealed supercoiled structures whereas that of DNA that banded at the lower density demonstrated relaxed circular molecules. The superhelical molecules were converted to relaxed circles by treatment with pancreatic DNase. The molecular weight of the viral DNA was calculated to be 81 x 10(6) by sedimentation in neutral sucrose and 78 x 10(6) by sedimentation in alkaline sucrose. The molecular weight estimated from length measurements in electron micrographs was 76 x 10(6). The buoyant density of the granulosis virus DNA was 1.703 g/cm(3) and that of its insect host DNA was 1.697 g/cm(3). Equilibrium sedimentation in cesium chloride and thermal denaturation indicated G + C contents of 44% and 39% for the viral and host DNA, respectively.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/23571','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/23571"><span>X-DRAIN and XDS: a simplified road erosion prediction method</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>William J. Elliot; David E. Hall; S. R. Graves</p> <p>1998-01-01</p> <p>To develop a simple road sediment delivery tool, the WEPP program modeled sedimentation from forest roads for more than 50,000 combinations of distance between cross drains, road gradient, soil texture, distance from stream, steepness of the buffer between the road and the stream, and climate. The sediment yield prediction from each of these runs was stored in a data...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017SedG..361...82M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017SedG..361...82M"><span>Morphological signatures of microbial activity across sediment and light microenvironments of Lake Vanda, Antarctica</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mackey, Tyler J.; Sumner, Dawn Y.; Hawes, Ian; Jungblut, Anne D.</p> <p>2017-11-01</p> <p>Cyanobacteria-dominated microbial mats in Lake Vanda grow with pinnacles and ridges separated by prostrate mat. Rocks protrude over microbial mats on the lake bottom to create localized, dm-scale gradients in sedimentation and irradiance. The effects of sedimentation on pinnacle and ridge growth were isolated from photosynthetic activity by contrasting growth across microenvironmental gradients. Sedimentation rate was measured as the mass of sand and mud sized sediment in mat that accumulated over 11 years, and the incident light was modeled near and under rocks by reconstructing topography using Structure from Motion techniques. Morphologically diverse pinnacles and ridges were documented in both exposed and sheltered mat microenvironments, in addition to growing downward from the underside of overhanging rocks. Mat that grew with > 40% irradiance under overhangs did not have consistent differences in pinnacle density or ridge abundance as a function of sedimentation rates or irradiance when compared to exposed mat. However, their morphology did change significantly with changes in the direction of incident irradiance. Where irradiance was < 40% ambient or light intersected the mat at very low angles, few pinnacles were present and ridges were preferentially aligned parallel to incident light direction. These observations indicate that pinnacle nucleation and spacing were not strongly influenced by sedimentation but pinnacle and ridge morphology varied in response to directional irradiance.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70028038','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70028038"><span>Annual sediment flux estimates in a tidal strait using surrogate measurements</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Ganju, N.K.; Schoellhamer, D.H.</p> <p>2006-01-01</p> <p>Annual suspended-sediment flux estimates through Carquinez Strait (the seaward boundary of Suisun Bay, California) are provided based on surrogate measurements for advective, dispersive, and Stokes drift flux. The surrogates are landward watershed discharge, suspended-sediment concentration at one location in the Strait, and the longitudinal salinity gradient. The first two surrogates substitute for tidally averaged discharge and velocity-weighted suspended-sediment concentration in the Strait, thereby providing advective flux estimates, while Stokes drift is estimated with suspended-sediment concentration alone. Dispersive flux is estimated using the product of longitudinal salinity gradient and the root-mean-square value of velocity-weighted suspended-sediment concentration as an added surrogate variable. Cross-sectional measurements validated the use of surrogates during the monitoring period. During high freshwater flow advective and dispersive flux were in the seaward direction, while landward dispersive flux dominated and advective flux approached zero during low freshwater flow. Stokes drift flux was consistently in the landward direction. Wetter than average years led to net export from Suisun Bay, while dry years led to net sediment import. Relatively low watershed sediment fluxes to Suisun Bay contribute to net export during the wet season, while gravitational circulation in Carquinez Strait and higher suspended-sediment concentrations in San Pablo Bay (seaward end of Carquinez Strait) are responsible for the net import of sediment during the dry season. Annual predictions of suspended-sediment fluxes, using these methods, will allow for a sediment budget for Suisun Bay, which has implications for marsh restoration and nutrient/contaminant transport. These methods also provide a general framework for estimating sediment fluxes in estuarine environments, where temporal and spatial variability of transport are large. ?? 2006 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018GML....38..273D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018GML....38..273D"><span>Mechanisms of muddy clinothem progradation on the Southwest Louisiana Chenier Plain inner shelf</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Denommee, Kathryn C.; Bentley, Samuel J.; Harazim, Dario</p> <p>2018-06-01</p> <p>In both modern and ancient shelf settings, mud-dominated successions commonly contain complex stratigraphic geometries in which low-gradient clinothems feature prominently. Despite their ubiquity, the full range of mechanisms responsible for sediment dispersal and clinothem progradation in such settings is not well understood. Using sediment core data (210PbXS, 137Cs, grain size, porosity, X-radiography) and shallow seismic observations, this study examines the mechanisms of across-shelf sediment transport and clinothem progradation on the muddy Southwest Louisiana Atchafalaya Chenier Plain inner shelf. Observations indicate that rapid transfer of organic matter-rich sediment to the outer topsets and clinothem rollover occurs mainly via hydrodynamic fluid-mud processes during times of high wave-current bed shear stress (e.g., during the passage of storms). Rapid sedimentation, wave perturbation, and the development of biogenic methane within the shallow seabed result in the generation of large internal pore water pressures such that the clinothem rollover and foreset sediments are inherently in a condition of incipient failure. Subsequent basinward sediment transfer to the foresets occurs largely in association with low-gradient (<0.02°) mass-failure events, evidenced by widespread scarping and mudflows on the seabed. These represent an important and as yet unattributed mechanism for clinothem progradation in the study area and are likely to drive basinward sediment transport in other muddy shelf clinothem systems, both modern and ancient.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2001AGUFM.H11B0235F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2001AGUFM.H11B0235F"><span>Influence of Wetland and Channel Sediments on Strontium-90 Transport in the Borschi Stream, near Chernobyl</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Freed, R.; Smith, L.; Bugai, D.</p> <p>2001-12-01</p> <p>In the Borschi watershed, 3 km south of the Chernobyl nuclear power plant, we have found the transfer of 90Sr in wetlands pore waters to surface waters and the subsequent flow of wetland surface waters to the stream, largely effect the concentration of 90Sr in the Borschi channel. In Borschi, we have observed that during most of the year, wetlands are the main source of 90Sr contributing to the Borschi stream and channel bottom sediments are a secondary source. Wetland pore waters have at least an order of magnitude higher concentration of 90Sr than all other surface and subsurface waters. Pore water data obtained using peepers shows the 90Sr diffusion gradient is high in near-surface wetland sediments while the 90Sr diffusion gradient is moderate to insignificant in near-surface channel sediments. Channel and wetland sediments are highly depleted in 90Sr compared with immobile nuclear fission products such as europium-154 and can account for all of the 90Sr removed by the stream since the accident. While channel sediments are largely depleted in exchangeable 90Sr, wetland sediments represent a large source of exchangeable 90Sr. Removal of 90Sr by the stream from the wetland and channel sediments is on the same order as mass loss by decay.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28318691','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28318691"><span>Evaluation of simulated dredging to control internal phosphorus release from sediments: Focused on phosphorus transfer and resupply across the sediment-water interface.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yu, Juhua; Ding, Shiming; Zhong, Jicheng; Fan, Chengxin; Chen, Qiuwen; Yin, Hongbin; Zhang, Lei; Zhang, Yinlong</p> <p>2017-08-15</p> <p>Sediment dredging is an effective restoration method to control the internal phosphorus (P) loading of eutrophic lakes. However, the core question is that the real mechanism of dredging responsible for sediment internal P release still remains unclear. In this study, we investigated the P exchange across the sediment-water interface (SWI) and the internal P resupply ability from the sediments after dredging. The study is based on a one-year field simulation study in Lake Taihu, China, using a Rhizon soil moisture sampler, high-resolution dialysis (HR-Peeper), ZrO-Chelex diffusive gradients in thin film (ZrO-Chelex DGT), and P fractionation and adsorption isotherm techniques. The results showed low concentration of labile P in the pore water with a low diffusion potential and a low resupply ability from the sediments after dredging. The calculated flux of P from the post-dredged sediments decreased by 58% compared with that of non-dredged sediments. Furthermore, the resupply in the upper 20mm of the post-dredged sediments was reduced significantly after dredging (P<0.001). Phosphorus fractionation analysis showed a reduction of 25% in the mobile P fractions in the post-dredged sediments. Further analysis demonstrated that the zero equilibrium P concentration (EPC 0 ), partitioning coefficient (K p ), and adsorption capacity (Q max ) on the surface sediments increased after dredging. Therefore, dredging could effectively reduce the internal P resupply ability of the sediments. The reasons for this reduction are probably the lower contributions of mobile P fractions, higher retention ability, and the adsorption capacity of P for post-dredged sediments. Overall, this investigation indicated that dredging was capable of effectively controlling sediment internal P release, which could be ascribed to the removal of the surface sediments enriched with total phosphorus (TP) and/or organic matter (OM), coupled with the inactivation of P to iron (Fe) (hydr)oxides in the upper 20mm active layer. Copyright © 2017 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21556884','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21556884"><span>Influence of deglaciation on microbial communities in marine sediments off the coast of Svalbard, Arctic Circle.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Park, Soo-Je; Park, Byoung-Joon; Jung, Man-Young; Kim, So-Jeong; Chae, Jong-Chan; Roh, Yul; Forwick, Matthias; Yoon, Ho-Il; Rhee, Sung-Keun</p> <p>2011-10-01</p> <p>Increases in global temperatures have been shown to enhance glacier melting in the Arctic region. Here, we have evaluated the effects of meltwater runoff on the microbial communities of coastal marine sediment located along a transect of Temelfjorden, in Svalbard. As close to the glacier front, the sediment properties were clearly influenced by deglaciation. Denaturing gradient gel electrophoresis profiles showed that the sediment microbial communities of the stations of glacier front (stations 188-178) were distinguishable from that of outer fjord region (station 176). Canonical correspondence analysis indicated that total carbon and calcium carbonate in sediment and chlorophyll a in bottom water were key factors driving the change of microbial communities. Analysis of 16S rRNA gene clone libraries suggested that microbial diversity was higher within the glacier-proximal zone (station 188) directly affected by the runoffs than in the outer fjord region. While the crenarchaeotal group I.1a dominated at station 176 (62%), Marine Benthic Group-B and other Crenarchaeota groups were proportionally abundant. With regard to the bacterial community, alpha-Proteobacteria and Flavobacteria lineages prevailed (60%) at station 188, whereas delta-Proteobacteria (largely sulfate-reducers) predominated (32%) at station 176. Considering no clone sequences related to sulfate-reducers, station 188 may be more oxic compared to station 176. The distance-wise compositional variation in the microbial communities is attributable to their adaptations to the sediment environments which are differentially affected by melting glaciers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22791276','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22791276"><span>Effect of biostimulants on 2,4,6-trinitrotoluene (TNT) degradation and bacterial community composition in contaminated aquifer sediment enrichments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Fahrenfeld, Nicole; Zoeckler, Jeffrey; Widdowson, Mark A; Pruden, Amy</p> <p>2013-04-01</p> <p>2,4,6-Trinitrotoluene (TNT) is a toxic and persistent explosive compound occurring as a contaminant at numerous sites worldwide. Knowledge of the microbial dynamics driving TNT biodegradation is limited, particularly in native aquifer sediments where it poses a threat to water resources. The purpose of this study was to quantify the effect of organic amendments on anaerobic TNT biodegradation rate and pathway in an enrichment culture obtained from historically contaminated aquifer sediment and to compare the bacterial community dynamics. TNT readily biodegraded in all microcosms, with the highest biodegradation rate obtained under the lactate amended condition followed by ethanol amended and naturally occurring organic matter (extracted from site sediment) amended conditions. Although a reductive pathway of TNT degradation was observed across all conditions, denaturing gradient gel electrophoresis (DGGE) analysis revealed distinct bacterial community compositions. In all microcosms, Gram-negative γ- or β-Proteobacteria and Gram-positive Negativicutes or Clostridia were observed. A Pseudomonas sp. in particular was observed to be stimulated under all conditions. According to non-metric multidimensional scaling analysis of DGGE profiles, the microcosm communities were most similar to heavily TNT-contaminated field site sediment, relative to moderately and uncontaminated sediments, suggesting that TNT contamination itself is a major driver of microbial community structure. Overall these results provide a new line of evidence of the key bacteria driving TNT degradation in aquifer sediments and their dynamics in response to organic carbon amendment, supporting this approach as a promising technology for stimulating in situ TNT bioremediation in the subsurface.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27751665','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27751665"><span>The effect of heavy metal contamination on the bacterial community structure at Jiaozhou Bay, China.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yao, Xie-Feng; Zhang, Jiu-Ming; Tian, Li; Guo, Jian-Hua</p> <p></p> <p>In this study, determination of heavy metal parameters and microbiological characterization of marine sediments obtained from two heavily polluted sites and one low-grade contaminated reference station at Jiaozhou Bay in China were carried out. The microbial communities found in the sampled marine sediments were studied using PCR-DGGE (denaturing gradient gel electrophoresis) fingerprinting profiles in combination with multivariate analysis. Clustering analysis of DGGE and matrix of heavy metals displayed similar occurrence patterns. On this basis, 17 samples were classified into two clusters depending on the presence or absence of the high level contamination. Moreover, the cluster of highly contaminated samples was further classified into two sub-groups based on the stations of their origin. These results showed that the composition of the bacterial community is strongly influenced by heavy metal variables present in the sediments found in the Jiaozhou Bay. This study also suggested that metagenomic techniques such as PCR-DGGE fingerprinting in combination with multivariate analysis is an efficient method to examine the effect of metal contamination on the bacterial community structure. Copyright © 2016 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_5");'>5</a></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li class="active"><span>7</span></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_7 --> <div id="page_8" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li class="active"><span>8</span></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="141"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29501960','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29501960"><span>Transfer kinetics of phosphorus (P) in macrophyte rhizosphere and phytoremoval performance for lake sediments using DGT technique.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wu, Zhihao; Wang, Shengrui; Luo, Jun</p> <p>2018-05-15</p> <p>DGT (diffusive gradients in thin films) technique and DIFS (DGT induced fluxes in sediment) model are firstly designed for macrophyte-rhizobox system and in-situ macrophytes in Lake Erhai. Dynamics of phosphorus (P) transfer in Zizania latifolia (ZL) and Myriophyllum verticiilatur (MV) rhizosphere is revealed and phytoremediation performance for P in sediment is evaluated. Dynamic transfer process of P at DGT/sediment interface includes (i) diffusion flux and concentration gradients at DGT(root)/porewater interface leading to porewater concentration (C 0 ) depletion and (ii) P desorption from labile P pool in sediment solid to resupply C 0 depletion. Fe-redox controlled P release from Fe-bound P (BD-P2) and then NH 4 Cl-P1 in rhizosphere sediment resupplies porewater depletion due to DGT (root) sink. K d (labile P pool size in solid phase), r (resupply ratio) and kinetic exchange (Tc and k -1 ) lead to change characters of DIFS curves of (1) r against deployment time and (2) C solu (dissolved concentration) against distance at 24 h. They include two opposite types of "fast" and "slow" rate of resupplies. Sediment properties and DIFS parameters control P diffusion and resupply in rhizosphere sediment. Phytoremoval ability for sediment P in lake is estimated to be 23.4 (ZL) or 15.0 t a -1 (MV) by "DGT-flux" method. Copyright © 2018 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013EGUGA..15.3925B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013EGUGA..15.3925B"><span>GOCE gravity gradient data for lithospheric modeling and geophysical exploration research</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bouman, Johannes; Ebbing, Jörg; Meekes, Sjef; Lieb, Verena; Fuchs, Martin; Schmidt, Michael; Fattah, Rader Abdul; Gradmann, Sofie; Haagmans, Roger</p> <p>2013-04-01</p> <p>GOCE gravity gradient data can improve modeling of the Earth's lithosphere and upper mantle, contributing to a better understanding of the Earth's dynamic processes. We present a method to compute user-friendly GOCE gravity gradient grids at mean satellite altitude, which are easier to use than the original GOCE gradients that are given in a rotating instrument frame. In addition, the GOCE gradients are combined with terrestrial gravity data to obtain high resolution grids of gravity field information close to the Earth's surface. We also present a case study for the North-East Atlantic margin, where we analyze the use of satellite gravity gradients by comparison with a well-constrained 3D density model that provides a detailed picture from the upper mantle to the top basement (base of sediments). We demonstrate how gravity gradients can increase confidence in the modeled structures by calculating the sensitvity of model geometry and applied densities at different observation heights; e.g. satellite height and near surface. Finally, this sensitivity analysis is used as input to study the Rub' al Khali desert in Saudi Arabia. In terms of modeling and data availability this is a frontier area. Here gravity gradient data help especially to set up the regional crustal structure, which in turn allows to refine sedimentary thickness estimates and the regional heat-flow pattern. This can have implications for hydrocarbon exploration in the region.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/15761691','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/15761691"><span>Phylogenetic analysis of Archaea in the deep-sea sediments of west Pacific Warm Pool.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wang, Peng; Xiao, Xiang; Wang, Fengping</p> <p>2005-06-01</p> <p>Archaea are known to play important roles in carbon cycling in marine sediments. The main compositions of archaeal community in five deep-sea sediment samples collected from west Pacific Warm Pool area (WP-0, WP-1, WP-2, WP-3, WP-4), and in five sediment layers (1 cm-, 3 cm-, 6 cm-, 10 cm-, 12 cm- layer) of the 12 cm sediment core of WP-0 were checked and compared by denaturing gradient gel electrophoresis and 16 S rRNA gene sequencing. It was revealed that all the deep-sea sediment samples checked contained members of non-thermophilic marine group I crenarchaeota as the predominant archaeal group. To further detect groups of archaea possibly relating with C1 metabolism, PCR amplification was carried out using primers targeting methane-oxidizing archaea. Although no methane-oxidizing archaea was detected, a group of novel archaea (named as WPA) was instead identified from all these five WP samples by clone analysis. They could be placed in the euryarchaeota kingdom, separated into two distinct groups, the main group was peripherally related with methanogens, the other group related with Thermoplasma. The vertical distributions of WPA, archaea and bacteria along the WP-0 sediment column were determined by quantitative-PCR. It was found that bacteria dominated at all depths, the numbers of bacteria were 10-10(4) times more than those of archaea. The proportion of archaea versus bacteria had a depth related increasing tendency, it was lowest at the first layer (0.01%), reached highest at the 12 cm- layer (10%). WPA only constituted a small proportion of the archaeal community (0.05% to 5%) of west Pacific Warm Pool sediment.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010EGUGA..1213699B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010EGUGA..1213699B"><span>Sediment core and glacial environment reconstruction - a method review</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bakke, Jostein; Paasche, Øyvind</p> <p>2010-05-01</p> <p>Alpine glaciers are often located in remote and high-altitude regions of the world, areas that only rarely are covered by instrumental records. Reconstructions of glaciers has therefore proven useful for understanding past climate dynamics on both shorter and longer time-scales. One major drawback with glacier reconstructions based solely on moraine chronologies - by far the most common -, is that due to selective preservation of moraine ridges such records do not exclude the possibility of multiple Holocene glacier advances. This problem is true regardless whether cosmogenic isotopes or lichenometry have been used to date the moraines, or also radiocarbon dating of mega-fossils buried in till or underneath the moraines themselves. To overcome this problem Karlén (1976) initially suggested that glacial erosion and the associated production of rock-flour deposited in downstream lakes could provide a continuous record of glacial fluctuations, hence overcoming the problem of incomplete reconstructions. We want to discuss the methods used to reconstruct past glacier activity based on sediments deposited in distal glacier-fed lakes. By quantifying physical properties of glacial and extra-glacial sediments deposited in catchments, and in downstream lakes and fjords, it is possible to isolate and identify past glacier activity - size and production rate - that subsequently can be used to reconstruct changing environmental shifts and trends. Changes in average sediment evacuation from alpine glaciers are mainly governed by glacier size and the mass turnover gradient, determining the deformation rate at any given time. The amount of solid precipitation (mainly winter accumulation) versus loss due to melting during the ablation-season (mainly summer temperature) determines the mass turnover gradient in either positive or negative direction. A prevailing positive net balance will lead to higher sedimentation rates and vice versa, which in turn can be recorded in downstream lakes. To retrieve these glacial sediments it is necessary to collect sediment cores from the lake bottom. Reading the glacial signal, as preserved in the lake sediments, now includes the application of various methods such as measuring the amount of minerogenic versus biologic matter (typically inferred from Loss-on-ignition (LOI)), grain size analysis (GSA), magnetic properties (MP), geochemical elements (GE), Rare-Earth Elements (REE), Bulk Sediment Density (BSD), but also other techniques such as XRF analyses. Moreover, detailed glacier reconstructions can also be used to assess denudation rates, chemical and physical weathering as well specific glaciological changes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/27345','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/27345"><span>Sediment dynamics of a high gradient stream in the Oi river basin of Japan</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Hideji Maita</p> <p>1991-01-01</p> <p>This paper discusses the effects of the valley width for discontinuities of sediment transport in natural stream channels. The results may be summarized as follows: 1)ln torrential rivers. deposition or erosion depend mostly on the sediment supply. not on the magnitude of the flow discharge. 2)Wide valley floors of streams are depositional spaces where the excess...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008Geomo..99..224K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008Geomo..99..224K"><span>The morphometric and stratigraphic framework for estimates of debris flow incidence in the North Cascades foothills, Washington State, USA</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kovanen, Dori J.; Slaymaker, Olav</p> <p>2008-07-01</p> <p>Active debris flow fans in the North Cascade Foothills of Washington State constitute a natural hazard of importance to land managers, private property owners and personal security. In the absence of measurements of the sediment fluxes involved in debris flow events, a morphological-evolutionary systems approach, emphasizing stratigraphy, dating, fan morphology and debris flow basin morphometry, was used. Using the stratigraphic framework and 47 radiocarbon dates, frequency of occurrence and relative magnitudes of debris flow events have been estimated for three spatial scales of debris flow systems: the within-fan site scale (84 observations); the fan meso-scale (six observations) and the lumped fan, regional or macro-scale (one fan average and adjacent lake sediments). In order to characterize the morphometric framework, plots of basin area v. fan area, basin area v. fan gradient and the Melton ruggedness number v. fan gradient for the 12 debris flow basins were compared with those documented for semi-arid and paraglacial fans. Basin area to fan area ratios were generally consistent with the estimated level of debris flow activity during the Holocene as reported below. Terrain analysis of three of the most active debris flow basins revealed the variety of modes of slope failure and sediment production in the region. Micro-scale debris flow event systems indicated a range of recurrence intervals for large debris flows from 106-3645 years. The spatial variation of these rates across the fans was generally consistent with previously mapped hazard zones. At the fan meso-scale, the range of recurrence intervals for large debris flows was 273-1566 years and at the regional scale, the estimated recurrence interval of large debris flows was 874 years (with undetermined error bands) during the past 7290 years. Dated lake sediments from the adjacent Lake Whatcom gave recurrence intervals for large sediment producing events ranging from 481-557 years over the past 3900 years and clearly discernible sedimentation events in the lacustrine sediments had a recurrence interval of 67-78 years over that same period.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29502261','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29502261"><span>Heavy metals in soils and sediments from Dongting Lake in China: occurrence, sources, and spatial distribution by multivariate statistical analysis.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhang, Yaxin; Tian, Ye; Shen, Maocai; Zeng, Guangming</p> <p>2018-05-01</p> <p>Heavy metal contamination in soils/sediments and its impact on human health and ecological environment have aroused wide concerns. Our study investigated 30 samples of soils and sediments around Dongting Lake to analyze the concentration of As, Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Zn in the samples and to distinguish the natural and anthropogenic sources. Also, the relationship between heavy metals and the physicochemical properties of samples was studied by multivariate statistical analysis. Concentration of Cd at most sampling sites were more than five times that of national environmental quality standard for soil in China (GB 15618-1995), and Pb and Zn levels exceeded one to two times. Moreover, Cr in the soil was higher than the national environmental quality standards for one to two times while in sediment was lower than the national standard. The investigation revealed that the accumulations of As, Cd, Mn, and Pb in the soils, and sediments were affected apparently by anthropogenic activities; however, Cr, Fe, and Ni levels were impacted by parent materials. Human activities around Dongting Lake mainly consisted of industrial activities, mining and smelting, sewage discharges, fossil fuel combustion, and agricultural chemicals. The spatial distribution of heavy metal in soil followed the rule of geographical gradient, whereas in sediments, it was significantly affected by the river basins and human activities. The result of principal component analysis (PCA) demonstrated that heavy metals in soils were associated with pH and total phosphorus (TP), while in sediments, As, Cr, Fe, and Ni were closely associated with cation exchange capacity (CEC) and pH, where Pb, Zn, and Cd were associated with total nitrogen (TN), TP, total carbon (TC), moisture content (MC), soil organic matter (SOM), and ignition lost (IL). Our research provides comprehensive approaches to better understand the potential sources and the fate of contaminants in lakeshore soils and sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=318390&Lab=NRMRL&keyword=dependency&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=318390&Lab=NRMRL&keyword=dependency&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Quantifying groundwater dependency of riparian surface hydrologic features using the exit gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>This study examines groundwater exit gradients as a way to quantify groundwater interactions with surface water. We calibrated high resolution groundwater models for the basin fill sediments in the lower Calapooia watershed, Oregon, using data collected between 1928--2000. The e...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1983JGR....88.9341B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1983JGR....88.9341B"><span>Sediment sound velocities from Sonobuoys: Sunda Trench and forearc basins, Nicobar and Central Bengal Fans, and Andaman Sea Basins</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bachman, Richard T.; Hamilton, Edwin L.; Curray, Joseph R.</p> <p>1983-11-01</p> <p>Supplement is available with entire article on microfiche. Order from American Geophysical Union, 2000 Florida Avenue, N.W., Washington, DC 20009. Document B83-007; $2.50. Payment must accompany order. Measurements of mean sound velocities in the first, largely unlithified layers in the seafloor were made using the sonobuoy technique in several areas in the northern Indian Ocean. Older measurements were added to new measurements, and regressions for mean and instantaneous velocity versus one-way travel time of sound are presented for the central Bengal Fan, the central Andaman Sea Basin, the Nicobar Fan, and the Sunda Trench. New data and regression equations are presented for the Mergui-north Sumatra Basin and for four forearc basins between Sumatra and Java and the Sunda Trench. Minimum velocity gradients were found in those areas where sedimentation rates were high, and sediments have accumulated in thick sections which have not had time to fully consolidate (porosity in the top of the sediment section has not been fully reduced under overburden pressure). These minimum velocity gradients (just under the seafloor) were found in the four forearc basins where they ranged from 0.34 s-1 to 0.84 s-1 with an average of 0.58 s-1. The near-surface velocity gradient in the Sunda Trench was 1.33 s-1, but was higher in the adjacent, fossil Nicobar Fan (1.62 s-1). In the surface of the Bengal Fan the velocity gradient was low in the upper fan (0.86 s-1), high in the central fan (1.94 s-1), and again lower in the southern fan (1.18 s-1), which may support sedimentation models calling for bypassing of the central fan and higher rates of accumulation on the southern fan.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMPP51B1068H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMPP51B1068H"><span>Testing a laser-induced breakdown spectroscopy technique on the Arctic sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Han, D.; Nam, S. I.</p> <p>2017-12-01</p> <p>Physical and geochemical investigations coupled with the Laser-induced Breakdown Spectroscopy (LIBS) were performed on three surface sediment cores (ARA03B/24BOX, ARA02B/01(A)MUC, ARA02B/02MUC and ARA02B/03(A)MUC) recovered from the western Arctic Ocean (Chukchi Sea) during IBRV ARON expeditions in 2012. The LIBS technique was applied to carry out elemental chemical analysis of the Arctic sediments and compared with that measured by ITRAX X-ray fuorescence (XRF) core scanning. LIBS and XRF have shown similar elemental composition within each sediment core. In this study, mineral composition (XRD), grain size distribution and organic carbon content as well as elemental composition (LIBS) were all considered to understand paleoenvironmental changes (ocean circulation, sea-ice drift, iceberg discharge, and etc.) recorded in the Arctic Holocene sediment. Quantitative LIBS analysis shows a gradually varying distribution of the elements along the sampled core and clear separation between the cores. The cores are geochemically characterized by elevated Mn profile. The gradient of mineral composition and grain sizes among the cores shows regional distribution and variation in sedimentary condition due to geological distance between East Siberian and North America. The present study reveals that a LIBS technique can be employed for in-situ sediment analyses for the Arctic Ocean. Furthermore, LIBS does not require costly equipment, trained operators, and complicated sample pre-treatment processes compared to Atomic absorption spectroscopy (AAS) and inductively coupled plasma emission spectroscopy (ICP), and also known to show relatively high levels of sensitivity, precision, and distinction than XRF analysis, scanning electron microscopy-energy dispersive spectrometry (SEM-EDS), and electron probe X-ray microanalysis (EPMA).</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24493461','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24493461"><span>Shallow water marine sediment bacterial community shifts along a natural CO2 gradient in the Mediterranean Sea off Vulcano, Italy.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kerfahi, Dorsaf; Hall-Spencer, Jason M; Tripathi, Binu M; Milazzo, Marco; Lee, Junghoon; Adams, Jonathan M</p> <p>2014-05-01</p> <p>The effects of increasing atmospheric CO(2) on ocean ecosystems are a major environmental concern, as rapid shoaling of the carbonate saturation horizon is exposing vast areas of marine sediments to corrosive waters worldwide. Natural CO(2) gradients off Vulcano, Italy, have revealed profound ecosystem changes along rocky shore habitats as carbonate saturation levels decrease, but no investigations have yet been made of the sedimentary habitat. Here, we sampled the upper 2 cm of volcanic sand in three zones, ambient (median pCO(2) 419 μatm, minimum Ω(arag) 3.77), moderately CO(2)-enriched (median pCO(2) 592 μatm, minimum Ω(arag) 2.96), and highly CO(2)-enriched (median pCO(2) 1611 μatm, minimum Ω(arag) 0.35). We tested the hypothesis that increasing levels of seawater pCO(2) would cause significant shifts in sediment bacterial community composition, as shown recently in epilithic biofilms at the study site. In this study, 454 pyrosequencing of the V1 to V3 region of the 16S rRNA gene revealed a shift in community composition with increasing pCO(2). The relative abundances of most of the dominant genera were unaffected by the pCO(2) gradient, although there were significant differences for some 5 % of the genera present (viz. Georgenia, Lutibacter, Photobacterium, Acinetobacter, and Paenibacillus), and Shannon Diversity was greatest in sediments subject to long-term acidification (>100 years). Overall, this supports the view that globally increased ocean pCO(2) will be associated with changes in sediment bacterial community composition but that most of these organisms are resilient. However, further work is required to assess whether these results apply to other types of coastal sediments and whether the changes in relative abundance of bacterial taxa that we observed can significantly alter the biogeochemical functions of marine sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EGUGA..1413332O','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EGUGA..1413332O"><span>New discovered Izmir and Busan Mud Volcanoes and Application of Seismic Attributes and AVO Analysis in the Easternmost Black Sea.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Okay, S.; Cifci, G.; Ozel, S.; Atgin, O.; Ozel, O.; Barin, B.; Er, M.; Dondurur, D.; Kucuk, M.; Gurcay, S.; Choul Kim, D.; Sung-Ho, B.</p> <p>2012-04-01</p> <p>Recently, the continental margins of Black Sea became important for its gas content. There are no scientific researches offshore Trabzon-Giresun area except the explorations of oil companies. This is the first survey that performed in that area. 1700 km high resolution multichannel seismic and chirp data simultaneously were collected onboard R/V K.Piri Reis . The seismic data reveal BSRs, bright spots and acoustic maskings especially on the eastern part of the survey area. The survey area in the Eastern Black Sea includes continental slope, apron and deep basin. Two mud volcanoes are discovered and named as Busan and Izmir. The observed fold belt is believed to be the main driving force for the growth of mud volcanoes.Faults are developed at the flanks of diapiric uplift. Seismic attributes and AVO analysis are applied to 9 seismic sections which have probable gassy sediments and BSR zones. In the seismic attribute analysis high amplitude horzions with reverse polarity are observed in instantaneous frequency, envelope and apparent polarity sections also with low frequency at instantaneous frequency sections. These analysis verify existence of gas accumulations in the sediments. AVO analysis and cross section drawing and Gradient analysis show Class 1 AVO anomaly and indicate gas in sediments. Keywords: BSR, Bright spot, Mud volcano, Seismic Attributes, AVO</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=64751&keyword=5+AND+amendment&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=64751&keyword=5+AND+amendment&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>BACTERIAL METHYLMERCURY DEGRADATION IN FLORIDA EVERGLADES PEAT SEDIMENT</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently <=0.1 d-1 and decreased ...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=65289&keyword=diversity+AND+surface&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=65289&keyword=diversity+AND+surface&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>EFFECTS OF SEDIMENT CONTAMINANTS AND ENVIRONMENTAL GRADIENTS ON MACROBENTHIC COMMUNITY TROPHIC STRUCTURE IN GULF OF MEXICO ESTUARIES</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Macrobenthic communities from estuaries throughout the northern Gulf of Mexico were studied to assess the influence of sediment contaminants and natural environmental factors on macrobenthic community trophic structure. Community trophic data were also used to evaluate whether re...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=236155&Lab=NHEERL&keyword=types+AND+qualitative+AND+research&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=236155&Lab=NHEERL&keyword=types+AND+qualitative+AND+research&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Distribution of macroalgae and sediment chlorophyll A along salinity and elevation gradients in Oregon tidal marshes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Algae contribute to trophic and biogeochemical processes in tidal wetlands. We investigated patterns of sediment pigment content and macroalgal abundance and diversity in marshes in four Oregon estuaries representing a variety of vegetation types, salinity regimes, and tidal ele...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.gpo.gov/fdsys/pkg/CFR-2013-title40-vol26/pdf/CFR-2013-title40-vol26-sec230-25.pdf','CFR2013'); return false;" href="https://www.gpo.gov/fdsys/pkg/CFR-2013-title40-vol26/pdf/CFR-2013-title40-vol26-sec230-25.pdf"><span>40 CFR 230.25 - Salinity gradients.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.gpo.gov/fdsys/browse/collectionCfr.action?selectedYearFrom=2013&page.go=Go">Code of Federal Regulations, 2013 CFR</a></p> <p></p> <p>2013-07-01</p> <p>... entrance to an estuary or river mouth that significantly restricts the movement of the salt water into and... estuary. The downstream migration of the salinity gradient can occur, displacing the maximum sedimentation... estuary below that which is considered normal can affect the location and type of mixing thereby changing...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.gpo.gov/fdsys/pkg/CFR-2014-title40-vol25/pdf/CFR-2014-title40-vol25-sec230-25.pdf','CFR2014'); return false;" href="https://www.gpo.gov/fdsys/pkg/CFR-2014-title40-vol25/pdf/CFR-2014-title40-vol25-sec230-25.pdf"><span>40 CFR 230.25 - Salinity gradients.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.gpo.gov/fdsys/browse/collectionCfr.action?selectedYearFrom=2014&page.go=Go">Code of Federal Regulations, 2014 CFR</a></p> <p></p> <p>2014-07-01</p> <p>... entrance to an estuary or river mouth that significantly restricts the movement of the salt water into and... estuary. The downstream migration of the salinity gradient can occur, displacing the maximum sedimentation... estuary below that which is considered normal can affect the location and type of mixing thereby changing...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.gpo.gov/fdsys/pkg/CFR-2011-title40-vol25/pdf/CFR-2011-title40-vol25-sec230-25.pdf','CFR2011'); return false;" href="https://www.gpo.gov/fdsys/pkg/CFR-2011-title40-vol25/pdf/CFR-2011-title40-vol25-sec230-25.pdf"><span>40 CFR 230.25 - Salinity gradients.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.gpo.gov/fdsys/browse/collectionCfr.action?selectedYearFrom=2011&page.go=Go">Code of Federal Regulations, 2011 CFR</a></p> <p></p> <p>2011-07-01</p> <p>... entrance to an estuary or river mouth that significantly restricts the movement of the salt water into and... estuary. The downstream migration of the salinity gradient can occur, displacing the maximum sedimentation... estuary below that which is considered normal can affect the location and type of mixing thereby changing...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.gpo.gov/fdsys/pkg/CFR-2012-title40-vol26/pdf/CFR-2012-title40-vol26-sec230-25.pdf','CFR2012'); return false;" href="https://www.gpo.gov/fdsys/pkg/CFR-2012-title40-vol26/pdf/CFR-2012-title40-vol26-sec230-25.pdf"><span>40 CFR 230.25 - Salinity gradients.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.gpo.gov/fdsys/browse/collectionCfr.action?selectedYearFrom=2012&page.go=Go">Code of Federal Regulations, 2012 CFR</a></p> <p></p> <p>2012-07-01</p> <p>... entrance to an estuary or river mouth that significantly restricts the movement of the salt water into and... estuary. The downstream migration of the salinity gradient can occur, displacing the maximum sedimentation... estuary below that which is considered normal can affect the location and type of mixing thereby changing...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18569314','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18569314"><span>Total Hg, methyl Hg and other toxic heavy metals in a northern Gulf of Mexico estuary: Louisiana Pontchartrain basin.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Delaune, R D; Gambrell, R P; Jugsujinda, Aroon; Devai, Istavan; Hou, Aixin</p> <p>2008-07-15</p> <p>Concentration of total Hg, methyl Hg, and other heavy metals were determined in sediment collected along a salinity gradient in a Louisiana Gulf Coast estuary. Surface sediment was collected at established coordinates (n = 292) along a salinity gradient covering Lake Maurepas, Lake Pontchartrain, Lake Borgne and the Chandeleur Sound located in the 12,170 km(2) Pontchartrain basin estuary southeastern coastal Louisiana. Lake Maurepas sediment with lower salinity contained higher levels of methyl Hg (0.80 microg/kg) than Lake Pontchartrain (0.55 microg/kg). Lake Maurepas sediment also had higher levels of total Hg (98.0 microg/kg) as compared to Lake Pontchartrain (67.0 microg/kg). Average total Hg content of Lake Borgne and the Chandeleur Sound sediment was 24.0 microg/kg dry sediment and methyl Hg content averaged 0.21 microg/kg dry sediment. Methyl Hg content of sediment was positively correlated with total Hg, organic matter and clay content of sediment. Methyl Hg was inversely correlated with salinity, sediment Eh and sand content. Total Hg and methyl Hg decreased with increase in salinity in the order of Lake Maurepas > Lake Pontchartrain > Lake Borgne/ the Chandeleur Sound. Lake Maurepas containing several times higher amount of methyl Hg in sediment as compared to Lake Pontchartrain and Lake Borgne and the Chandeleur Sound is an area that could serve as potential source of mercury to the aquatic food chain. Methyl Hg content of sediment in the estuary could be predicted by the equation: Methyl Hg = 0.11670-0.0625 x Salinity + 0.05349 x O.M. + 0.00513 x Total Hg - 0.00250 x Clay. Concentrations of other toxic heavy metals (Pb, Cd, Ni, Cu and Zn) in sediment were not elevated and was statistically correlated with sediment texture and iron and aluminum content of sediment.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_6");'>6</a></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li class="active"><span>8</span></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_8 --> <div id="page_9" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li class="active"><span>9</span></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="161"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=20040082344&hterms=Reynolds+number&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D40%26Ntt%3DReynolds%2Bnumber','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=20040082344&hterms=Reynolds+number&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D40%26Ntt%3DReynolds%2Bnumber"><span>Fluctuations, Stratification and Stability in a Liquid Fluidized Bed at Low Reynolds Number</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Segre, P. N.; McClymer, J. P.</p> <p>2004-01-01</p> <p>The sedimentation dynamics of extremely low polydispersity, non-colloidal, particles are studied in a liquid fluidized bed at low Reynolds number, Re much less than 1. When fluidized, the system reaches a steady state, defined where the local average volume fraction does not vary in time. In steady state, the velocity fluctuations and the particle concentrations are found to strongly depend on height. Using our results, we test a recently developed stability model for steady state sedimentation. The model describes the data well, and shows that in steady state there is a balancing of particle fluxes due to the fluctuations and the concentration gradient. Some results are also presented for the dependence of the concentration gradient in fluidized beds on particle size; the gradients become smaller as the particles become larger and fewer in number.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMEP51D..05W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMEP51D..05W"><span>Restoring Wood-Rich Hotspots in Mountain Stream Networks</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wohl, E.; Scott, D.</p> <p>2016-12-01</p> <p>Mountain streams commonly include substantial longitudinal variability in valley and channel geometry, alternating repeatedly between steep, narrow and relatively wide, low gradient segments. Segments that are wider and lower gradient than neighboring steeper sections are hotspots with respect to: retention of large wood (LW) and finer sediment and organic matter; uptake of nutrients; and biomass and biodiversity of aquatic and riparian organisms. These segments are also more likely to be transport-limited with respect to floodplain and instream LW. Management designed to protect and restore riverine LW and the physical and ecological processes facilitated by the presence of LW is likely to be most effective if focused on relatively low-gradient stream segments. These segments can be identified using a simple, reach-scale gradient analysis based on high-resolution DEMs, with field visits to identify factors that potentially limit or facilitate LW recruitment and retention, such as forest disturbance history or land use. Drawing on field data from the western US, this presentation outlines a procedure for mapping relatively low-gradient segments in a stream network and for identifying those segments where LW reintroduction or retention is most likely to balance maximizing environmental benefits derived from the presence of LW while minimizing hazards associated with LW.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=376118','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=376118"><span>In Vitro Product of a Ribonucleic Acid Polymerase Induced by Influenza Virus</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Mahy, B. W. J.; Bromley, P. A.</p> <p>1970-01-01</p> <p>The ribonucleic acid (RNA)-dependent RNA polymerase induced in the microsomal fraction of cells infected with influenza virus synthesized a mixture of single-and double-stranded RNA in vitro. The single-stranded RNA sedimented mainly in the 8S region on sucrose density gradients, with a smaller proportion of the RNA sedimenting at 18S. This sedimentation pattern corresponds closely to that of incomplete influenza virus RNA. The double-stranded RNA formed in vitro sedimented at 11S, but molecules which may be replicative intermediate, sedimenting at 14 to 20S, were also detected in the in vitro reaction product. Similar species of RNA were detected in vivo by pulse-labeling infected cells at the time of polymerase harvest, but the proportion of each RNA species was different, most of the RNA being single-stranded and sedimenting in the 18S region. An 11S double-stranded RNA was also synthesized in vivo. Pulse chase analysis of the double-stranded RNA synthesized in vitro showed that most is stable, and only a small proportion turns over during the reaction. A proportion of the RNA formed in vitro could be annealed to RNA formed in infected cells and to RNA extracted from purified virus. PMID:5480408</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004AGUFM.T43B1327H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004AGUFM.T43B1327H"><span>Relationships between heat flow, thermal and pressure fields in the Gulf of Mexico</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Husson, L.; Henry, P.; Le Pichon, X.</p> <p>2004-12-01</p> <p>The thermal field of the Gulf of Mexico (GoM) is restored from a comprehensive temperature-depth database. A striking feature is the systematic sharp gradient increase between 2500 and 4000 m. The analysis of the pressure (fracturation tests and mud weights) indicates a systematic correlation between the pressure and temperature fields, as well as with the thickness of Plio-Pleistocene sedimentary layer, and is interpreted as the fact of cooling from fluid flow in the upper, almost hydrostatically pressured layer. The Nusselt number, that we characterize by the ratio between the near high-P gradient over low-P gradient varies spatially and is correlated to the structural pattern of the GoM; this observation outlines the complex relationships between heat and fluid flows, structure and sedimentation. The deep thermal signal is restored in terms of gradient and heat flow density from a statistical analysis of the thermal data combined to the thermal modelling of about 175 wells. At a regional scale, although the sedimentary cover is warmer in Texas than in Louisiana in terms of temperature, the steady state basal heat flow is higher in Louisiana. In addition, beneath the Corsair Fault, which lay offshore parallel to the Texan coast, the high heat flow suggests a zone of Tertiary lithospheric thinning.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2001AGUFMOS32A0473B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2001AGUFMOS32A0473B"><span>Calibration of Gephyrocapsa Coccolith Abundance in Holocene Sediments for Paleo-temperature Assessment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bollmann, J.; Brabec, B.</p> <p>2001-12-01</p> <p>Abundance and assemblage compositions of microplankton, together with their chemical and stable isotopic composition, have been among the most successful methods in paleoceanography. One of the most frequently applied techniques for reconstruction of paleo-temperature is a transfer function using the relative abundance of planktic foraminifera in sediment samples. Here we present evidence, suggesting that absolute sea surface temperature for a given location can be also calculated from the relative abundance of Gephyrocapsa morphotypes in sediment samples with an accuracy comparable to foraminifera transfer functions. By extrapolating this finding, paleo-enviromental interpretations can be obtained for the Late Pleistocene and discrepancies between the different currently used methods (e.g., foraminifer, alkenone and Ca/Mg derived temperature estimates) might be resolved. Eighty-one Holocene sediment samples were selected from the Pacific, Indian and Atlantic Oceans covering a temperature gradient from 13.4° C to 29.4° C, a salinity gradient from 32.21 to 37.34 and a productivity gradient of 0.045 to 0.492μ g chlorophyll/L. Standard multiple linear regression analyses were applied to this data set, linking the relative abundance of Gephyrocapsa morphotypes to mean sea surface temperature. The best model revealed an r2 of 0.8 with a standard residual error of 1.8° C for calculation of the mean sea surface temperature.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70022510','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70022510"><span>The urban environmental gradient: Anthropogenic influences on the spatial and temporal distributions of lead and zinc in sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Callender, Edward; Rice, Karen C.</p> <p>2000-01-01</p> <p>Urban settings are a focal point for environmental contamination due to emissions from industrial and municipal activities and the widespread use of motor vehicles. As part of the National Water-Quality Assessment Program of the U.S. Geological Survey, streambed-sediment and dated reservoir-sediment samples were collected from the Chattahoochee River Basin and analyzed for total lead (Pb) and zinc (Zn) concentrations. The sampling transect extends from northern Georgia, through Atlanta, to the Gulf of Mexico and reflects a steep gradient in population density from nearly 1000 people/km2 in the Atlanta Metropolitan Area to fewer than 50 people/km2 in rural areas of southern Georgia and northern Florida. Correlations among population density, traffic density, and total and anthropogenic Pb and Zn concentrations indicate that population density is strongly related to traffic density and is a predictor of Pb and Zn concentrations in the environment derived from anthropogenic activities. Differences in the distributions of total Pb and Zn concentrations along the urban−suburban−rural gradient from Atlanta to the Florida Panhandle are related to temporal and spatial processes. That is, with the removal of leaded gasoline starting in the late 1970s, peak Pb concentrations have decreased to the present. Conversely, increased vehicular usage has kept Zn concentrations elevated in runoff from population centers, which is reflected in the continued enrichment of Zn in aquatic sediments. Sediments from rural areas also contain elevated concentrations of Zn, possibly in response to substantial power plant emissions for the region, as well as vehicular traffic.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70034751','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70034751"><span>Processes that initiate turbidity currents and their influence on turbidites: A marine geology perspective</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Piper, David J.W.; Normark, William R.</p> <p>2009-01-01</p> <p>How the processes that initiate turbidity currents influence turbidite deposition is poorly understood, and many discussions in the literature rely on concepts that are overly simplistic. Marine geological studies provide information on the initiation and flow path of turbidity currents, including their response to gradient. In case studies of late Quaternary turbidites on the eastern Canadian and western U.S. margins, initiation processes are inferred either from real-time data for historical flows or indirectly from the age and contemporary paleogeography, erosional features, and depositional record. Three major types of initiation process are recognized: transformation of failed sediment, hyperpycnal flow from rivers or ice margins, and resuspension of sediment near the shelf edge by oceanographic processes. Many high-concentration flows result from hyperpycnal supply of hyperconcentrated bedload, or liquefaction failure of coarse-grained sediment, and most tend to deposit in slope conduits and on gradients < 0.5° at the base of slope and on the mid fan. Highly turbulent flows, from transformation of retrogressive failures and from ignitive flows that are triggered by oceanographic processes, tend to cannibalize these more proximal sediments and redeposit them on lower gradients on the basin plain. Such conduit flushing provides most of the sediment in large turbidites. Initiation mechanism exerts a strong control on the duration of turbidity flows. In most basins, there is a complex feedback between different types of turbidity-current initiation, the transformation of the flows, and the associated slope morphology. As a result, there is no simple relationship between initiating process and type of deposit.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AIPC.1862c0194S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AIPC.1862c0194S"><span>Analysis of gravity data beneath Endut geothermal prospect using horizontal gradient and Euler deconvolution</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Supriyanto, Noor, T.; Suhanto, E.</p> <p>2017-07-01</p> <p>The Endut geothermal prospect is located in Banten Province, Indonesia. The geological setting of the area is dominated by quaternary volcanic, tertiary sediments and tertiary rock intrusion. This area has been in the preliminary study phase of geology, geochemistry, and geophysics. As one of the geophysical study, the gravity data measurement has been carried out and analyzed in order to understand geological condition especially subsurface fault structure that control the geothermal system in Endut area. After precondition applied to gravity data, the complete Bouguer anomaly have been analyzed using advanced derivatives method such as Horizontal Gradient (HG) and Euler Deconvolution (ED) to clarify the existance of fault structures. These techniques detected boundaries of body anomalies and faults structure that were compared with the lithologies in the geology map. The analysis result will be useful in making a further realistic conceptual model of the Endut geothermal area.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011AGUFM.G23A0824C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011AGUFM.G23A0824C"><span>Subsidence Induced Faulting Hazard Zonation Using Persistent Scatterer Interferometry and Horizontal Gradient Mapping in Mexican Urban Areas</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cabral-Cano, E.; Cigna, F.; Osmanoglu, B.; Dixon, T.; Wdowinski, S.</p> <p>2011-12-01</p> <p>Subsidence and faulting have affected Mexico city for more than a century and the process is becoming widespread throughout larger urban areas in central Mexico. This process causes substantial damages to the urban infrastructure and housing structures and will certainly become a major factor to be considered when planning urban development, land use zoning and hazard mitigation strategies in the next decades. Subsidence is usually associated with aggressive groundwater extraction rates and a general decrease of aquifer static level that promotes soil consolidation, deformation and ultimately, surface faulting. However, local stratigraphic and structural conditions also play an important role in the development and extension of faults. In all studied cases stratigraphy of the uppermost sediment strata and the structure of the underlying volcanic rocks impose a much different subsidence pattern which is most suitable for imaging through satellite geodetic techniques. We present examples from several cities in central Mexico: a) Mexico-Chalco. Very high rates of subsidence, up to 370 mm/yr are observed within this lacustrine environment surrounded by Pliocene-Quaternary volcanic structures. b) Aguascalientes where rates up to 90 mm/yr in the past decade are observed, is controlled by a stair stepped N-S trending graben that induces nucleation of faults along the edges of contrasting sediment package thicknesses. c) Morelia presents subsidence rates as high as 80 mm/yr. Differential deformation is observed across major basin-bounding E-W trending faults and with higher subsidence rates on their hanging walls, where the thickest sequences of compressible Quaternary sediments crop out. Our subsidence and faulting study in urban areas of central Mexico is based on a horizontal gradient analysis using displacement maps from Persistent Scatterer InSAR that allows definition of areas with high vulnerability to surface faulting. Correlation of the surface subsidence pattern through satellite geodesy and surface faults show that the principal factor for defining these hazardous areas is best determined not by solely using the subsidence magnitude rates but rather by using a combined magnitude and horizontal subsidence gradient analysis. This approach is used as the basis for the generation of subsidence-induced surface faulting hazard maps for the studied urban areas.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/1115849-microscale-geochemical-gradients-hanford-area-sediment-biofilms-influence-uranium','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/1115849-microscale-geochemical-gradients-hanford-area-sediment-biofilms-influence-uranium"><span>Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Nguyen, Hung D.; Cao, Bin; Mishra, Bhoopesh</p> <p>2012-01-01</p> <p>The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H(2), pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H(2) concentrations were heterogeneous at the microscale (<500-1000more » μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H(2) under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L(III)-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22078229','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22078229"><span>Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Nguyen, Hung Duc; Cao, Bin; Mishra, Bhoopesh; Boyanov, Maxim I; Kemner, Kenneth M; Fredrickson, Jim K; Beyenal, Haluk</p> <p>2012-01-01</p> <p>The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H(2), pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H(2) concentrations were heterogeneous at the microscale (<500-1000 μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H(2) under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L(III)-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state. Copyright © 2011 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/of/1982/0124/report.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/of/1982/0124/report.pdf"><span>Determination of pentachlorophenol in water and aquifer sediments by high-performance liquid chromatography</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Goerlitz, D.F.</p> <p>1981-01-01</p> <p>Methods for the determination of pentachlorophenol (PCP) in water and aquifer sediments are presented. Reverse-phase high-performance liquid chromotography employing ion suppression and gradient elution is used. PCP can be determined directly in water at a lower limit of detection Of 0.2 micrograms per liter. For extracts of sediment, PCP can be determined to a lower limit of 1.0 micrograms per kilogram.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/AD1049148','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/AD1049148"><span>Acoustic Wave Dispersion and Scattering in Complex Marine Sediment Structures</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2018-03-21</p> <p>Developed theory and methodology to distinguish between the two major classes of volume heterogeneities, discrete particles or a fluctuation...acoustics of muddy sediments has become of intense interest in the ONR community and very large and non -linear gradients have been observed in such...method was applied to measured reflection data in a muddy sediment area, where highly non -linear depth-dependent profiles were obtained – informed by the</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?direntryid=335091&keyword=water&subject=water%20research&showcriteria=2&fed_org_id=111&datebeginpublishedpresented=02/02/2012&dateendpublishedpresented=02/02/2017&sortby=pubdateyear','PESTICIDES'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?direntryid=335091&keyword=water&subject=water%20research&showcriteria=2&fed_org_id=111&datebeginpublishedpresented=02/02/2012&dateendpublishedpresented=02/02/2017&sortby=pubdateyear"><span>The New Bedford Harbor Superfund Site Long Term ...</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.epa.gov/pesticides/search.htm">EPA Pesticide Factsheets</a></p> <p></p> <p></p> <p>Background. New Bedford Harbor (NBH), located in southeastern Massachusetts, was designated as a marine Superfund site in 1983 due to sediment contamination by polychlorinated biphenyls (PCBs). Based on risks to human health and the environment, the first two phases of the site cleanup involved dredging PCB-contaminated sediments from the harbor. Therefore, a long-term monitoring program (LTM) was developed to measure spatial and temporal chemical and biological changes in sediment, water, and biota to assess the effects and effectiveness of the remedial activities. Approach. A systematic, probabilistic sampling design was used to select approximately 70 sediment sampling stations. Sediment was collected at each station and chemical (e.g., PCBs, metals), physical (e.g., grain size), and biological (e.g., benthic community) measurements were conducted on all samples. There have been six sample collections to date: 1993-baseline, 1995-post hot spot removal, 1999-prior to full scale dredging, and then at 5 year intervals: 2004, 2009, and 2014. Mussel (Mytilus edulis) bioaccumulation has also been measured twice yearly. Results. There is a decreasing spatial gradient in sediment PCB concentrations from the northern boundary (upper harbor) to the southern boundary (outer harbor) of the site. Along this same transect, there is an increase in biological condition (e.g., benthic community diversity). Temporally, the contaminant and biological gradients have been</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22660713','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22660713"><span>Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Pires, Ana C C; Cleary, Daniel F R; Almeida, Adelaide; Cunha, Angela; Dealtry, Simone; Mendonça-Hagler, Leda C S; Smalla, Kornelia; Gomes, Newton C M</p> <p>2012-08-01</p> <p>Mangroves are complex ecosystems that regulate nutrient and sediment fluxes to the open sea. The importance of bacteria and fungi in regulating nutrient cycles has led to an interest in their diversity and composition in mangroves. However, very few studies have assessed Archaea in mangroves, and virtually nothing is known about whether mangrove rhizospheres affect archaeal diversity and composition. Here, we studied the diversity and composition of Archaea in mangrove bulk sediment and the rhizospheres of two mangrove trees, Rhizophora mangle and Laguncularia racemosa, using denaturing gradient gel electrophoresis (DGGE) and pyrosequencing of archaeal 16S rRNA genes with a nested-amplification approach. DGGE profiles revealed significant structural differences between bulk sediment and rhizosphere samples, suggesting that roots of both mangrove species influence the sediment archaeal community. Nearly all of the detected sequences obtained with pyrosequencing were identified as Archaea, but most were unclassified at the level of phylum or below. Archaeal richness was, furthermore, the highest in the L. racemosa rhizosphere, intermediate in bulk sediment, and the lowest in the R. mangle rhizosphere. This study shows that rhizosphere microhabitats of R. mangle and L. racemosa, common plants in subtropical mangroves located in Rio de Janeiro, Brazil, hosted distinct archaeal assemblages.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3406151','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3406151"><span>Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Pires, Ana C. C.; Cleary, Daniel F. R.; Almeida, Adelaide; Cunha, Ângela; Dealtry, Simone; Mendonça-Hagler, Leda C. S.; Smalla, Kornelia</p> <p>2012-01-01</p> <p>Mangroves are complex ecosystems that regulate nutrient and sediment fluxes to the open sea. The importance of bacteria and fungi in regulating nutrient cycles has led to an interest in their diversity and composition in mangroves. However, very few studies have assessed Archaea in mangroves, and virtually nothing is known about whether mangrove rhizospheres affect archaeal diversity and composition. Here, we studied the diversity and composition of Archaea in mangrove bulk sediment and the rhizospheres of two mangrove trees, Rhizophora mangle and Laguncularia racemosa, using denaturing gradient gel electrophoresis (DGGE) and pyrosequencing of archaeal 16S rRNA genes with a nested-amplification approach. DGGE profiles revealed significant structural differences between bulk sediment and rhizosphere samples, suggesting that roots of both mangrove species influence the sediment archaeal community. Nearly all of the detected sequences obtained with pyrosequencing were identified as Archaea, but most were unclassified at the level of phylum or below. Archaeal richness was, furthermore, the highest in the L. racemosa rhizosphere, intermediate in bulk sediment, and the lowest in the R. mangle rhizosphere. This study shows that rhizosphere microhabitats of R. mangle and L. racemosa, common plants in subtropical mangroves located in Rio de Janeiro, Brazil, hosted distinct archaeal assemblages. PMID:22660713</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009EGUGA..11.1324A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009EGUGA..11.1324A"><span>Anthropogenic effects on marine mollusks diversity and abundance; mangrove mollusks along an environmental gradient at Teyab, Persian gulf</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Azarmanesh, H.; Javanshir, A.</p> <p>2009-04-01</p> <p>Management of coastal environments requires understanding of ecological relationships among different habitats and their biotas.. The mollusk diversity and density and sedimentological properties of mangrove (Avicennia marina) stands of two different seasons in Teyab have been compared. Pollutant area and cleaner area showed clear separation on the basis of environmental characteristics and benthic mollusks. Numbers of mollusks taxa were generally larger at cleaner sites, and numbers of individuals of several taxa were also larger at other sites. The total number of individuals was not different between the two seasons, largely due to the presence of large numbers of the Mud-living gastropod Cerithium cingulata at the pollutant sites. Differences in the Mollusks were coincident with differences in the nature of the sediment. Sediments in cleaner stands were more compacted and contained lesser organic matter and leaf litter.Analysis of sediment chemistry suggested that mangrove sediment in the Cleaner sites were able to take up more N and P than those in the other sites. Key Words: Sustainable development, Impact, Gastropods, Bivalves, Persian Gulf</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23705397','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23705397"><span>[Analysis of hydrodynamics parameters of runoff erosion and sediment-yielding on unpaved road].</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Huang, Peng-Fei; Wang, Wen-Long; Luo, Ting; Wang, Zhen; Wang, Zheng-Li; Li, Ren</p> <p>2013-02-01</p> <p>By the method of field runoff washout experiment, a simulation study was conducted on the relationships between the soil detachment rate and the hydrodynamic parameters on unpaved road, and the related quantitative formulas were established. Under the conditions of different flow discharges and road gradients, the averaged soil detachment rate increased with increasing flow discharge and road gradient, and the relationships between them could be described by a power function. As compared with road gradient, flow discharge had greater effects on the soil detachment rate. The soil detachment rate had a power relation with water flow velocity and runoff kinetic energy, and the runoff kinetic energy was of importance to the soil detachment rate. The soil detachment rate was linearly correlated with the unit runoff kinetic energy. The averaged soil erodibility was 0.120 g m-1.J-F-1, and the averaged critical unit runoff kinetic energy was 2.875 g.m-1.J-1. Flow discharge, road gradient, and unit runoff kinetic energy could be used to accurately describe the soil erosion process and calculate the soil erosion rate on unpaved road.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2168229','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2168229"><span>Diversity of ndo Genes in Mangrove Sediments Exposed to Different Sources of Polycyclic Aromatic Hydrocarbon Pollution▿</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Gomes, Newton C. Marcial; Borges, Ludmila R.; Paranhos, Rodolfo; Pinto, Fernando N.; Krögerrecklenfort, Ellen; Mendonça-Hagler, Leda C. S.; Smalla, Kornelia</p> <p>2007-01-01</p> <p>Polycyclic aromatic hydrocarbon (PAH) pollutants originating from oil spills and wood and fuel combustion are pollutants which are among the major threats to mangrove ecosystems. In this study, the composition and relative abundance in the sediment bacterial communities of naphthalene dioxygenase (ndo) genes which are important for bacterial adaptation to environmental PAH contamination were investigated. Three urban mangrove sites which had characteristic compositions and levels of PAH compounds in the sediments were selected. The diversity and relative abundance of ndo genes in total community DNA were assessed by a newly developed ndo denaturing gradient gel electrophoresis (DGGE) approach and by PCR amplification with primers targeting ndo genes with subsequent Southern blot hybridization analyses. Bacterial populations inhabiting sediments of urban mangroves under the impact of different sources of PAH contamination harbor distinct ndo genotypes. Sequencing of cloned ndo amplicons comigrating with dominant DGGE bands revealed new ndo genotypes. PCR-Southern blot analysis and ndo DGGE showed that the frequently studied nah and phn genotypes were not detected as dominant ndo types in the mangrove sediments. However, ndo genotypes related to nagAc-like genes were detected, but only in oil-contaminated mangrove sediments. The long-term impact of PAH contamination, together with the specific environmental conditions at each site, may have affected the abundance and diversity of ndo genes in sediments of urban mangroves. PMID:17905873</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=155435&Lab=NERL&keyword=temperature+AND+oxygen+AND+consumption&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=155435&Lab=NERL&keyword=temperature+AND+oxygen+AND+consumption&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>EFFECTS OF MOUNTAINTOP MINING/VALLEY FILL (MTM/VF) ON FUNCTIONAL INDICATORS IN APPALACHIAN HEADWATER STREAMS</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>The objectives of this poster were 1)to evaluate the impact of MTM/VF on the functional attributes SOD, soil/sediment respiration rate, soil/sediment DEA and dissolved trace gas concentrations across gradients of mining disturbance and hydrolgy and 2)compare these functional attr...</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_7");'>7</a></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li class="active"><span>9</span></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_9 --> <div id="page_10" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li class="active"><span>10</span></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="181"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=62518&keyword=computer+AND+tomography&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=62518&keyword=computer+AND+tomography&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>APPLICATION OF 3D COMPUTER-AIDED TOMOGRAPHY TO THE QUANTIFICATION OF MARINE SEDIMENT COMMUNITIES IN POLLUTION GRADIENTS</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Computer-Aided Tomography (CT) has been demonstrated to be a cost efficient tool for the qualitative and quantitative study of estuarine benthic communities along pollution gradients.<br>Now we have advanced this technology to successfully visualize and discriminate three dimen...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5226713','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5226713"><span>The Roles of Sea-Ice, Light and Sedimentation in Structuring Shallow Antarctic Benthic Communities</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Clark, Graeme F.; Stark, Jonathan S.; Palmer, Anne S.; Riddle, Martin J.; Johnston, Emma L.</p> <p>2017-01-01</p> <p>On polar coasts, seasonal sea-ice duration strongly influences shallow marine environments by affecting environmental conditions, such as light, sedimentation, and physical disturbance. Sea-ice dynamics are changing in response to climate, but there is limited understanding of how this might affect shallow marine environments and benthos. Here we present a unique set of physical and biological data from a single region of Antarctic coast, and use it to gain insights into factors shaping polar benthic communities. At sites encompassing a gradient of sea-ice duration, we measured temporal and spatial variation in light and sedimentation and hard-substrate communities at different depths and substrate orientations. Biological trends were highly correlated with sea-ice duration, and appear to be driven by opposing gradients in light and sedimentation. As sea-ice duration decreased, there was increased light and reduced sedimentation, and concurrent shifts in community structure from invertebrate to algal dominance. Trends were strongest on shallower, horizontal surfaces, which are most exposed to light and sedimentation. Depth and substrate orientation appear to mediate exposure of benthos to these factors, thereby tempering effects of sea-ice and increasing biological heterogeneity. However, while light and sedimentation both varied spatially with sea-ice, their dynamics differed temporally. Light was sensitive to the site-specific date of sea-ice breakout, whereas sedimentation fluctuated at a regional scale coincident with the summer phytoplankton bloom. Sea-ice duration is clearly the overarching force structuring these shallow Antarctic benthic communities, but direct effects are imposed via light and sedimentation, and mediated by habitat characteristics. PMID:28076438</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28076438','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28076438"><span>The Roles of Sea-Ice, Light and Sedimentation in Structuring Shallow Antarctic Benthic Communities.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Clark, Graeme F; Stark, Jonathan S; Palmer, Anne S; Riddle, Martin J; Johnston, Emma L</p> <p>2017-01-01</p> <p>On polar coasts, seasonal sea-ice duration strongly influences shallow marine environments by affecting environmental conditions, such as light, sedimentation, and physical disturbance. Sea-ice dynamics are changing in response to climate, but there is limited understanding of how this might affect shallow marine environments and benthos. Here we present a unique set of physical and biological data from a single region of Antarctic coast, and use it to gain insights into factors shaping polar benthic communities. At sites encompassing a gradient of sea-ice duration, we measured temporal and spatial variation in light and sedimentation and hard-substrate communities at different depths and substrate orientations. Biological trends were highly correlated with sea-ice duration, and appear to be driven by opposing gradients in light and sedimentation. As sea-ice duration decreased, there was increased light and reduced sedimentation, and concurrent shifts in community structure from invertebrate to algal dominance. Trends were strongest on shallower, horizontal surfaces, which are most exposed to light and sedimentation. Depth and substrate orientation appear to mediate exposure of benthos to these factors, thereby tempering effects of sea-ice and increasing biological heterogeneity. However, while light and sedimentation both varied spatially with sea-ice, their dynamics differed temporally. Light was sensitive to the site-specific date of sea-ice breakout, whereas sedimentation fluctuated at a regional scale coincident with the summer phytoplankton bloom. Sea-ice duration is clearly the overarching force structuring these shallow Antarctic benthic communities, but direct effects are imposed via light and sedimentation, and mediated by habitat characteristics.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5114544','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5114544"><span>Dramatic undercutting of piedmont rivers after the 2008 Wenchuan Ms 8.0 Earthquake</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Fan, Niannian; Nie, Ruihua; Wang, Qiang; Liu, Xingnian</p> <p>2016-01-01</p> <p>Changes in river channel erosion or deposition affect the geomorphic evolution, aquatic ecosystems, and river regulation strategies. Fluvial processes are determined by the flow, sediment and boundary conditions, and it has long been expected that increasing sediment supply will induce aggradation. Here, based on thorough field surveys, we show the unexpected undercutting of the piedmont rivers influenced by the 2008 Wenchuan (Ms 8.0) Earthquake. The rivers flow from the Longmen Mountain with significant topographic relief to the flat Chengdu plain. In the upstreams, sediment supply increased because of the landslides triggered by the earthquake, causing deposition in the upstream mountain reaches. However, the downstream plain reaches suffered undercutting instead of deposition, and among those rivers, Shiting River was the most seriously affected, with the largest undercutting depth exceeding 20 m. The reasons for this unexpected undercutting are proposed herein and relate to both natural and anthropogenic causes. In addition, we also demonstrate, at least for certain conditions, such as rivers flowing from large-gradient mountain regions to low-gradient plain regions, that upstream sediment pulses may induce aggradation in upstream and degradation in downstream, causing the longitudinal profile to steepen to accommodate the increasing sediment flux. PMID:27857220</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/wri/1989/4160/report.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/wri/1989/4160/report.pdf"><span>Sedimentation of Lake Taneycomo, Missouri, 1913-1987</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Berkas, W.R.</p> <p>1989-01-01</p> <p>On the basis of the data from a sedimentation survey done by the U.S. Department of Agriculture, Soil Conservation Service, during 1935 and data collected by the U.S. Geological Survey during 1987, the volume of sediment accumulated in Lake Taneycomo from 1913 to 1935 and 1913 to 1987 was determined. Table Rock Dam, built directly upstream from Lake Taneycomo during 1958, eliminated about 92% of the 4,644-sq mi basin from contributing sediment directly to the lake. Cesium-137 isotope was used as a tracer in the sediment to determine the quantity of deposition in the lake after Table Rock Dam was completed. The relation between cross-sectional area and distance upstream from the dam (curve method) was used to determine the 1913 (original), the 1935, and the 1987 volumes of Lake Taneycomo. A total of 910,000,000 cu ft of sediment accumulated between 1913 and 1935, 42% of the original volume of the lake. A total of 1 ,066,000,000 cu ft of sediment accumulated between 1913 and 1987 , 49% of the original volume. Lake Taneycomo seems to be functioning as an alluvial river, responding to the new energy gradient established by the spillway at Ozark Beach Dam, and later to changes in the sediment load. The upper two-thirds of the lake seems to have been scoured after Table Rock Dam greatly decreased the sediment load to the lake. The cesium-137 analysis indicated that sediment is still accumulating in the lower reaches of the lake, with measured accumulation generally ranging from 0.2 to 2.6 ft. (USGS)</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23959344','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23959344"><span>Characterizing spatial structure of sediment E. coli populations to inform sampling design.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Piorkowski, Gregory S; Jamieson, Rob C; Hansen, Lisbeth Truelstrup; Bezanson, Greg S; Yost, Chris K</p> <p>2014-01-01</p> <p>Escherichia coli can persist in streambed sediments and influence water quality monitoring programs through their resuspension into overlying waters. This study examined the spatial patterns in E. coli concentration and population structure within streambed morphological features during baseflow and following stormflow to inform sampling strategies for representative characterization of E. coli populations within a stream reach. E. coli concentrations in bed sediments were significantly different (p = 0.002) among monitoring sites during baseflow, and significant interactive effects (p = 0.002) occurred among monitoring sites and morphological features following stormflow. Least absolute shrinkage and selection operator (LASSO) regression revealed that water velocity and effective particle size (D 10) explained E. coli concentration during baseflow, whereas sediment organic carbon, water velocity and median particle diameter (D 50) were important explanatory variables following stormflow. Principle Coordinate Analysis illustrated the site-scale differences in sediment E. coli populations between disconnected stream segments. Also, E. coli populations were similar among depositional features within a reach, but differed in relation to high velocity features (e.g., riffles). Canonical correspondence analysis resolved that E. coli population structure was primarily explained by spatial (26.9–31.7 %) over environmental variables (9.2–13.1 %). Spatial autocorrelation existed among monitoring sites and morphological features for both sampling events, and gradients in mean particle diameter and water velocity influenced E. coli population structure for the baseflow and stormflow sampling events, respectively. Representative characterization of streambed E. coli requires sampling of depositional and high velocity environments to accommodate strain selectivity among these features owing to sediment and water velocity heterogeneity.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4602156','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4602156"><span>Patterns of benthic bacterial diversity in coastal areas contaminated by heavy metals, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Quero, Grazia Marina; Cassin, Daniele; Botter, Margherita; Perini, Laura; Luna, Gian Marco</p> <p>2015-01-01</p> <p>Prokaryotes in coastal sediments are fundamental players in the ecosystem functioning and regulate processes relevant in the global biogeochemical cycles. Nevertheless, knowledge on benthic microbial diversity patterns across spatial scales, or as function to anthropogenic influence, is still limited. We investigated the microbial diversity in two of the most chemically polluted sites along the coast of Italy. One site is the Po River Prodelta (Northern Adriatic Sea), which receives contaminant discharge from one of the largest rivers in Europe. The other site, the Mar Piccolo of Taranto (Ionian Sea), is a chronically polluted area due to steel production plants, oil refineries, and intense maritime traffic. We collected sediments from 30 stations along gradients of contamination, and studied prokaryotic diversity using Illumina sequencing of amplicons of a 16S rDNA gene fragment. The main sediment variables and the concentration of eleven metals, polychlorinated biphenyls (PCBs) and polycyclic aromatic hydrocarbons (PAHs) were measured. Chemical analyses confirmed the high contamination in both sites, with concentrations of PCBs particularly high and often exceeding the sediment guidelines. The analysis of more than 3 millions 16S rDNA sequences showed that richness decreased with higher contamination levels. Multivariate analyses showed that contaminants significantly shaped community composition. Assemblages differed significantly between the two sites, but showed wide within-site variations related with spatial gradients in the chemical contamination, and the presence of a core set of OTUs shared by the two geographically distant sites. A larger importance of PCB-degrading taxa was observed in the Mar Piccolo, suggesting their potential selection in this historically polluted site. Our results indicate that sediment contamination by multiple contaminants significantly alter benthic prokaryotic diversity in coastal areas, and suggests considering the potential contribution of the resident microbes to contaminant bioremediation actions. PMID:26528247</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/11541385','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/11541385"><span>Electric potentiation of gravikinesis in Paramecium is possibly mediated by filaments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Machemer, H</p> <p>1998-01-01</p> <p>Sensitivity of Paramecium to mechanical stress including gravitational force is organized along two opposing gradients of membrane channel distribution: depolarizing Ca channels and hyperpolarizing K channels. Mechanoreceptor channels reside in the membrane of the cell soma and are activated, when the weight of the cytoplasm deforms the "lower" plasma membrane. Channel distribution is such as to generate ciliary activation which can counteract sedimentation of the cells: a reduction in downward swimming rate and an augmentation in upward swimming rate. Application of weak DC fields does not only induce the well-known cathodal orientation and swimming of Paramecium toward the cathode (galvano-taxis). We document that swimming velocity is augmented up to 175% as a function of the voltage gradient between 0.3 V/cm and 0.8 V/cm (galvanokinesis). A gradient of 0.3 V/cm was highly effective in raising the common negative gravikinesis of downward swimmers threefold. The gravikinesis of upward swimmers reversed polarity under field stimulation inducing cells to augment sedimentation effects (positive gravikinesis). Both effects of electric-field stimulation on ciliary activation are of the depolarizing type: reduction in the frequency of normally beating cilia. Analysis of the data shows that a voltage-sensitivity of gravireceptor channels would not account for the observed potentiation of negative gravikinesis. It is suggested that a previously described voltage-dependent Ca channel of the soma membrane interferes with a Ca(2+)-sensitive, peripheral filament system, which directly connects to gravireceptor channels.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=19970022299&hterms=transport+solutes&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D60%26Ntt%3Dtransport%2Bsolutes','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=19970022299&hterms=transport+solutes&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D60%26Ntt%3Dtransport%2Bsolutes"><span>Statistics of Experiments on Cluster Formation and Transport in a Gravitational Field</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Izmailov, Alexander F.; Myerson, Allan S.</p> <p>1993-01-01</p> <p>Metastable state relaxation in a gravitational field is investigated in the case of non-critical binary solutions. A relaxation description is presented in terms of the time-dependent Ginzburg-Landau formalism for a non-conserved order parameter. A new ansatz for solution of the corresponding partial nonlinear stochastic differential equation is discussed. It is proved that, for the supersaturated solution under consideration, the metastable state relaxation in a gravitational field leads to formation of solute concentration gradients due to the sedimentation of subcritical solute clusters. The pure discussion of the possible methods to compare theoretical results and experimental data related to solute sedimentation in a gravitational field is presented. It is shown that in order to describe these experiments it is necessary to deal both with the value of the solute concentration gradient and with its formation rate. The stochastic nature of the sedimentation process is shown.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFMNH44B..07H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFMNH44B..07H"><span>Characteristics of a Recent and Prehistoric Landslides in the Pine River Valley, BC: a Mapping Effort</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Heijenk, R.; Geertsema, M.; Miller, B.; de Jong, S. M.</p> <p>2015-12-01</p> <p>Spreads and other low gradient landslides are common in glacial lake sediments in north eastern British Columbia. Both pre and post glacial lake sediments, largely derived from shale bedrock are susceptible to low-gradient landslides. Bank erosion by rivers and streams and high pore pressures, have contributed to the landslides. We used LiDAR for mapping the extent of the glaciolacustrine sediments and map and characterise landslides in the Pine River valley, near Chetwynd, British Columbia. We included metrics such as travel angle, length, area, and elevation to distinguish rotational and translational landslides. We mapped 45 landslides in the Pine River valley distinguishing between rotational and translational landslides. The rotational landslides commonly have a smaller area and smaller travel length than translational landslides. Most rotational slides involved overlying alluvial fans, while most translational slides involved terraces.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19.3924K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19.3924K"><span>The susceptibility analysis of landslides induced by earthquake in Aso volcanic area, Japan, scoping the prediction</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kubota, Tetsuya; Takeda, Tsuyoshi</p> <p>2017-04-01</p> <p>Kumamoto earthquake on April 16th 2016 in Kumamoto prefecture, Kyushu Island, Japan with intense seismic scale of M7.3 (maximum acceleration = 1316 gal in Aso volcanic region) yielded countless instances of landslide and debris flow that induced serious damages and causalities in the area, especially in the Aso volcanic mountain range. Hence, field investigation and numerical slope stability analysis were conducted to delve into the characteristics or the prediction factors of the landslides induced by this earthquake. For the numerical analysis, Finite Element Method (FEM) and CSSDP (Critical Slip Surface analysis by Dynamic Programming theory based on limit equilibrium method) were applied to the landslide slopes with seismic acceleration observed. These numerical analysis methods can automatically detect the landslide slip surface which has minimum Fs (factor of safety). The various results and the information obtained through this investigation and analysis were integrated to predict the landslide susceptible slopes in volcanic area induced by earthquakes and rainfalls of their aftermath, considering geologic-geomorphologic features, geo-technical characteristics of the landslides and vegetation effects on the slope stability. Based on the FEM or CSSDP results, the landslides occurred in this earthquake at the mild gradient slope on the ridge have the safety factor of slope Fs=2.20 approximately (without rainfall nor earthquake, and Fs>=1.0 corresponds to stable slope without landslide) and 1.78 2.10 (with the most severe rainfall in the past) while they have approximately Fs=0.40 with the seismic forces in this earthquake (horizontal direction 818 gal, vertical direction -320 gal respectively, observed in the earthquake). It insists that only in case of earthquakes the landslide in volcanic sediment apt to occur at the mild gradient slopes as well as on the ridges with convex cross section. Consequently, the following results are obtained. 1) At volcanic hillside, mild slopes of 7-10 ° gradient with volcanic sediment such as pumice are prone to collapse to be landslide by strong earthquake. 2) The slopes at the mountain ridge with convex cross section where the seismic vibration tends to concentrate are prone to form landslides in case of earthquake. 3) Due to the most severe precipitation of the past or in the aftermath of earthquake, no landslides occurred in these mild gradient slopes or on the mountain ridges with convex cross section. This information will be a great help in the aspect of landslide prediction.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27053089','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27053089"><span>Sequencing Insights into Microbial Communities in the Water and Sediments of Fenghe River, China.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lu, Sidan; Sun, Yujiao; Zhao, Xuan; Wang, Lei; Ding, Aizhong; Zhao, Xiaohui</p> <p>2016-07-01</p> <p>The connection between microbial community structure and spatial variation and pollution in river waters has been widely investigated. However, water and sediments together have rarely been explored. In this study, Illumina high-throughput sequencing was performed to analyze microbes in 24 water and sediment samples from natural to anthropogenic sources and from headstream to downstream areas. These data were used to assess variability in microbial community structure and diversity along in the Fenghe River, China. The relationship between bacterial diversity and environmental parameters was statistically analyzed. An average of 1682 operational taxonomic units was obtained. Microbial diversity increased from the headstream to downstream and tended to be greater in sediment compared with water. The water samples near the headstream endured relatively low Shannon and Chao1 indices. These diversity indices and the number of observed species in the water and sediment samples increase downstream. The parameters also differ in the two river tributaries. Community structures shift based on the extent of nitrogen pollution variation in the sediment and water samples. The four most dominant genera in the water community were Escherichia, Acinetobacter, Comamonadaceae, and Pseudomonas. In the sediments, the most dominant genera were Stramenopiles, Flavobacterium, Pseudomonas, and Comamonadaceae. The number of ammonia-oxidizing archaea in the headstream water slightly differed from that in the sediment but varied considerably in the downstream sediments. Statistical analysis showed that community variation is correlated with changes in ammonia nitrogen, total nitrogen, and nitrate nitrogen. This study identified different microbial community structures in river water and sediments. Overall this study emphasized the need to elucidate spatial variations in bacterial diversity in water and sediments associated with physicochemical gradients and to show the effects of such variation on waterborne microbial community structures.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=20000080596&hterms=mud&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D50%26Ntt%3Dmud','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=20000080596&hterms=mud&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D50%26Ntt%3Dmud"><span>The Interior Lowland Plains Unit of Mars: Evidence for a Possible Mud Ocean and Induced Tectonic Deformation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Tanaka, K. L.; Banerdt, W. B.</p> <p>2000-01-01</p> <p>We conclude from MOC and MOLA data that the northern plains of Mars were infilled by a sediment-rich, mud ocean. Evidence for subsidence within the north polar basin and reversed channel-floor gradients are consistent with tectonic deformation due to the sediment load.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=332251&Lab=NHEERL&keyword=quantitative+AND+survey+AND+research&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=332251&Lab=NHEERL&keyword=quantitative+AND+survey+AND+research&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Quantifying Relationships between Water Quality and Aquatic Life Use Attainment using Sediment Profile Imagery (SPI) in Pensacola Bay</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>We present results from a monthly sediment and water quality survey of nine stations along a transect in the Pensacola Bay estuary spanning the salinity gradient from Escambia River to the Gulf of Mexico. We evaluated Benthic Habitat Quality (Nilsson and Rosenberg 1997) derived f...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP51D..05L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP51D..05L"><span>Probing the Gaps: A Synthesis of Well-known and Lesser-known Hydrological Feedbacks Influencing Vegetation Patterning and Long-term Geomorphic Change in Low-gradient Fluvial Landscapes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Larsen, L.; Christensen, A.; Harvey, J. W.; Ma, H.; Newman, S.; Saunders, C.; Twilley, R.</p> <p>2017-12-01</p> <p>Emergence of vegetation patterning in fluvial landscapes is a classic example of how autogenic processes can drive long term fluvial and geomorphic adjustments in aquatic ecosystems. Studies elucidating the physics of flow through vegetation patches have produced understanding of how patterning in topography and vegetation commonly emerges and what effect it has on long term geomorphic change. However, with regard to mechanisms underlying pattern existence and resilience, several knowledge gaps remain, including the role of landscape-scale flow-vegetation feedbacks, feedbacks that invoke additional biogeochemical or biological agents, and determination of the relative importance of autogenic processes relative to external drivers. Here we provide a synthesis of the processes over a range of scales known to drive vegetation patterning and sedimentation in low gradient fluvial landscapes, emphasizing recent field and modeling studies in the Everglades, FL and Wax Lake Delta, LA that address these gaps. In the Everglades, while flow routing and sediment redistribution at the patch scale is known to be a primary driver of vegetation pattern emergence, landscape-scale routing of flow, as driven by the landscape's connectivity, can set up positive feedbacks that influence the rate of pattern degradation. Recent flow release experiments reveal that an additional feedback, involving phosphorus concentrations, flow, and floating vegetation communities that are abundant under low phosphorus, low flow conditions further stabilizes the alternative landscape states established through local scale sediment redistribution. Biogeochemistry-vegetation-sediment feedbacks may also be important for geomorphic development of newly emerging landscapes such as the Wax Lake Delta. There, fine sediment deposition shapes hydrogeomorphic zones with vegetation patterns that stimulate the growth of biofilm, while biofilm characteristics override the physical characteristics of vegetation canopies in determining fine sediment deposition rates and influence nitrogen and carbon biogeochemistry. Emerging tools and data streams, such as information flow analysis of lidar-derived vegetation biovolume and topography, can help identify the relative roles of autogenic vs. external forcing in these landscapes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/6061827-reduction-hydraulic-conductivity-column-simulations-unconsolidated-sediments-growth-situ-microflora','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/6061827-reduction-hydraulic-conductivity-column-simulations-unconsolidated-sediments-growth-situ-microflora"><span>Reduction of hydraulic conductivity in column simulations of unconsolidated sediments by growth of in situ microflora</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Bertetti, F.P.; Birnbaum, S.J.</p> <p>1992-01-01</p> <p>Laboratory experiments were employed to determine the effects of microbial growth upon the hydraulic conductivity (K) of unconsolidated sediments at Kelly Air Force Base, Texas. Indigenous microflora were isolated from sediment samples collected at sites contaminated with toxic organic compounds (e.g. dichlorobenzene) by plating on concentrated and dilute media. Plexiglas columns were packed with silica beads or Kelly AFB sediment and used to simulate ground water flow conditions. Grain sizes were selected to yield realistic K values (2.0 [times] 10[sup [minus]1] to 8.0 [times] 10[sup [minus]3] cm/sec) defined by field data from the contaminated sites. Both individual and mixed microbialmore » colonies, selected based on morphological characteristics individual and mixed microbial colonies, selected based on morphological characteristics deemed favorable for porosity obstruction, were injected into sterile, saturated columns. Growth was stimulated by adding sterile liquid nutrient media. Media flow rates were based upon field derived hydraulic conductivity values and water table gradients. Flow rates were controlled using a peristaltic pump. Growth of the microorganisms produced biomass which reduced the column hydraulic conductivity by up to 90% in 11 days. Reduction in K was accomplished via clogging of pore throats by cell attachment and accumulation on bead surfaces, and extracellular biofilm development. Sediment packed columns showed reduction in K values similar to that of bead packed columns of equivalent grain size. Porosity obstruction and corresponding reduction in K persisted in the columns even when subjected to hydraulic gradients significantly exceeding gradients measured in the field thereby demonstrating the robust nature of biological barrier to flow.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70032307','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70032307"><span>Scaling hyporheic exchange and its influence on biogeochemical reactions in aquatic ecosystems</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>O'Connor, Ben L.; Harvey, Judson W.</p> <p>2008-01-01</p> <p>Hyporheic exchange and biogeochemical reactions are difficult to quantify because of the range in fluid‐flow and sediment conditions inherent to streams, wetlands, and nearshore marine ecosystems. Field measurements of biogeochemical reactions in aquatic systems are impeded by the difficulty of measuring hyporheic flow simultaneously with chemical gradients in sediments. Simplified models of hyporheic exchange have been developed using Darcy's law generated by flow and bed topography at the sediment‐water interface. However, many modes of transport are potentially involved (molecular diffusion, bioturbation, advection, shear, bed mobility, and turbulence) with even simple models being difficult to apply in complex natural systems characterized by variable sediment sizes and irregular bed geometries. In this study, we synthesize information from published hyporheic exchange investigations to develop a scaling relationship for estimating mass transfer in near‐surface sediments across a range in fluid‐flow and sediment conditions. Net hyporheic exchange was quantified using an effective diffusion coefficient (De) that integrates all of the various transport processes that occur simultaneously in sediments, and dimensional analysis was used to scale De to shear stress velocity, roughness height, and permeability that describe fluid‐flow and sediment characteristics. We demonstrated the value of the derived scaling relationship by using it to quantify dissolved oxygen (DO) uptake rates on the basis of DO profiles in sediments and compared them to independent flux measurements. The results support a broad application of the De scaling relationship for quantifying coupled hyporheic exchange and biogeochemical reaction rates in streams and other aquatic ecosystems characterized by complex fluid‐flow and sediment conditions.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2989605','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2989605"><span>Redox Control and Hydrogen Production in Sediment Caps Using Carbon Cloth Electrodes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Sun, Mei; Yan, Fei; Zhang, Ruiling; Reible, Danny D.; Lowry, Gregory V.; Gregory, Kelvin B.</p> <p>2010-01-01</p> <p>Sediment caps that degrade contaminants can improve their ability to contain contaminants relative to sand and sorbent-amended caps, but few methods to enhance contaminant degradation in sediment caps are available. The objective of this study was to determine if, carbon electrodes emplaced within a sediment cap at poised potential could create a redox gradient and provide electron donor for the potential degradation of contaminants. In a simulated sediment cap overlying sediment from the Anacostia River (Washington, DC), electrochemically induced redox gradients were developed within 3 days and maintained over the period of the test (~100 days). Hydrogen and oxygen were produced by water electrolysis at the electrode surfaces and may serve as electron donor and acceptor for contaminant degradation. Electrochemical and geochemical factors that may influence hydrogen production were studied. Hydrogen production displayed zero order kinetics with ~75% coulombic efficiency and rates were proportional to the applied potential between 2.5V to 5V and not greatly affected by pH. Hydrogen production was promoted by increasing ionic strength and in the presence of natural organic matter. Graphite electrode-stimulated degradation of tetrachlorobenzene in a batch reactor was dependent on applied voltage and production of hydrogen to a concentration above the threshold for biological dechlorination. These findings suggest that electrochemical reactive capping can potentially be used to create “reactive” sediments caps capable of promoting chemical or biological transformations of contaminants within the cap. PMID:20879761</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26662101','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26662101"><span>In situ bioavailability of DDT and Hg in sediments of the Toce River (Lake Maggiore basin, Northern Italy): accumulation in benthic invertebrates and passive samplers.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Pisanello, Francesca; Marziali, Laura; Rosignoli, Federica; Poma, Giulia; Roscioli, Claudio; Pozzoni, Fiorenzo; Guzzella, Licia</p> <p>2016-06-01</p> <p>DDT and mercury (Hg) contamination in the Toce River (Northern Italy) was caused by a factory producing technical DDT and using a mercury-cell chlor-alkali plant. In this study, DDT and Hg contamination and bioavailability were assessed by using different approaches: (1) direct evaluation of sediment contamination, (2) assessment of bioaccumulation in native benthic invertebrates belonging to different taxonomic/functional groups, and (3) evaluation of the in situ bioavailability of DDT and Hg using passive samplers. Sampling sites were selected upstream and downstream the industrial plant along the river axis. Benthic invertebrates (Gammaridae, Heptageniidae, and Diptera) and sediments were collected in three seasons and analyzed for DDT and Hg content and the results were used to calculate the biota sediment accumulation factor (BSAF). Polyethylene passive samplers (PEs) for DDT and diffusive gradients in thin films (DGTs) for Hg were deployed in sediments to estimate the concentration of the toxicants in pore water. Analysis for (DDx) were performed using GC-MS. Accuracy was within ±30 % of the certified values and precision was >20 % relative standard deviation (RSD). Total mercury concentrations were determined using an automated Hg mercury analyzer. Precision was >5 % and accuracy was within ±10 % of certified values. The results of all the approaches (analysis of sediment, biota, and passive samplers) showed an increasing contamination from upstream to downstream sites. BSAF values revealed the bioavailability of both contaminants in the study sites, with values up to 49 for DDx and up to 3.1 for Hg. No correlation was found between values in sediments and the organisms. Concentrations calculated using passive samplers were correlated with values in benthic invertebrates, while no correlation was found with concentrations in sediments. Thus, direct analysis of toxicant in sediments does not provide a measurement of bioavailability. On the contrary, analysis of bioaccumulation in benthic organisms provides the most realistic picture of the site-specific bioavailability of DDx and Hg, but this approach is time-consuming and not always feasible. On the other hand, the in situ deployment of passive samplers proved to be a powerful tool, providing a good surrogate measure of bioaccumulation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/211907-na-sup-sup-atpase-histopathological-genetic-responses-corbicula-fluminea-sediment-associated-copper','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/211907-na-sup-sup-atpase-histopathological-genetic-responses-corbicula-fluminea-sediment-associated-copper"><span>NA{sup +}, K{sup +}-ATPase, histopathological, and genetic responses of Corbicula fluminea to sediment-associated copper</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Brown, S.</p> <p>1995-12-31</p> <p>Time-dependent responses to sediment-associated copper were studies at hierarchical levels of biological organization along an extreme concentration gradient (40 to 40,000 mg/kg total Cu). Laboratory and in situ estimates of molecular to tissue-level responses (Na/K-ATPase activity, DNA content, histopathology) were monitored in Corbicula fluminea (Asiatic clam), and compared with laboratory and field based survival of Corbicula and Elimia teres (an indigenous Gastropoda). Mollusc survival was, in turn, compared with effects on macrobenthic community composition along the stream/[Cu] gradient. Relationships between selected sediment characteristics and the bioavailability and toxicity of sediment associated copper were also investigated. Sediment-associated copper depressed Na/K-ATPase activitymore » and led to histopathological damage of renal and gill epithelia (vacuolization, degeneration), indicating that impaired ion regulation was an important mechanism of toxicity. Concurrent reductions in DNA content were believed to be secondary effects due to cell death, not an indication of genotoxicity. Sublethal responses were significantly correlated with survival in both species; however, while survival in situ was indicative of differences in community structure, laboratory-based survival was not. Copper levels in tissues were indicative of exposure, but were not significantly correlated with adverse effects. Copper levels in sediments, interstitial water, and overlying water varied independently of sediment characteristics except pH. Cu/AVS ratios were predictive of Corbicula and Elimia survival, but were not significantly related to differences in community structure. Instead, macrobenthic community structure was influenced by other sediment factors (grain size, Eh, pH).« less</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_8");'>8</a></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li class="active"><span>10</span></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_10 --> <div id="page_11" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li class="active"><span>11</span></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="201"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009GML....29..467G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009GML....29..467G"><span>Wave forecasting and longshore sediment transport gradients along a transgressive barrier island: Chandeleur Islands, Louisiana</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Georgiou, Ioannis Y.; Schindler, Jennifer K.</p> <p>2009-12-01</p> <p>Louisiana barrier islands, such as the chain surrounding the southeast region of the state, are experiencing rapid loss of land area, shoreline erosion, and landward migration due to transgression and in-place drowning, and the landfall of several major hurricanes in the last decade. Observations of migration rates and overall impacts to these barrier islands are poorly understood since they do not respond in a traditional way, such as barrier rollover. This paper aims to verify how wave energy and potential longshore sediment transport trends have influenced the recent evolution of the Chandeleur Islands, by direct comparison with recent observations of migration and erosion trends. The Chandeleur Islands are characterized by a bidirectional transport system, with material moving from the central arc to the flanks. The longshore sediment transport along the barrier islands was calculated after propagation and transformation of waves to breaking (generated using observed winds), and through the use of a common longshore sediment transport formula. Seasonal variations in wind climate produced changes in the transport trends and gradients that agree with migration and rotation patterns observed for this barrier island system. Results suggest that wind dominance produces seasonal oscillations that cause an imbalance in the resulting transport gradients that over time are responsible for higher rates of transport in the northward direction. These results and data from other works verify the evolutionary model previously suggested, and qualitatively confirm the recent observations in asymmetric shoreline erosion.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18778849','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18778849"><span>Responses of aquatic organisms to metal pollution in a lowland river in Flanders: a comparison of diatoms and macroinvertebrates.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>De Jonge, Maarten; Van de Vijver, Bart; Blust, Ronny; Bervoets, Lieven</p> <p>2008-12-15</p> <p>The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and sediment. This study indicated that to assess the effect of metal pollution in lowland rivers, the combined use of macroinvertebrates and diatoms is more appropriate than the use of both biota separately.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70031337','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70031337"><span>Centimeter-scale characterization of biogeochemical gradients at a wetland-aquifer interface using capillary electrophoresis</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Baez-Cazull, S.; McGuire, J.T.; Cozzarelli, I.M.; Raymond, A.; Welsh, L.</p> <p>2007-01-01</p> <p>Steep biogeochemical gradients were measured at mixing interfaces in a wetland-aquifer system impacted by landfill leachate in Norman, Oklahoma. The system lies within a reworked alluvial plain and is characterized by layered low hydraulic conductivity wetland sediments interbedded with sandy aquifer material. Using cm-scale passive diffusion samplers, "peepers", water samples were collected in a depth profile to span interfaces between surface water and a sequence of deeper sedimentary layers. Geochemical indicators including electron acceptors, low-molecular-weight organic acids, base cations, and NH4+ were analyzed by capillary electrophoresis (CE) and field techniques to maximize the small sample volumes available from the centimeter-scale peepers. Steep concentration gradients of biogeochemical indicators were observed at various interfaces including those created at sedimentary boundaries and boundaries created by heterogeneities in organic C and available electron acceptors. At the sediment-water interface, chemical profiles with depth suggest that SO42 - and Fe reduction dominate driven by inputs of organic C from the wetland and availability of electron acceptors. Deeper in the sediments (not associated with a lithologic boundary), a steep gradient of organic acids (acetate maximum 8.8 mM) and NH4+ (maximum 36 mM) is observed due to a localized source of organic matter coupled with the lack of electron acceptor inputs. These findings highlight the importance of quantifying the redox reactions occurring in small interface zones and assessing their role on biogeochemical cycling at the system scale. ?? 2007 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009ECSS...83..186C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009ECSS...83..186C"><span>Mesoscale variation in the photophysiology of the reef building coral Pocillopora damicornis along an environmental gradient</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cooper, Timothy F.; Ulstrup, Karin E.</p> <p>2009-06-01</p> <p>Spatial variation in the photophysiology of symbiotic dinoflagellates (zooxanthellae) of the scleractinian coral Pocillopora damicornis was examined along an environmental gradient in the Whitsunday Islands (Great Barrier Reef) at two depths (3 m and 6 m). Chlorophyll a fluorescence of photosystem II (PSII) and PAR-absorptivity measurements were conducted using an Imaging-PAM (pulse-amplitude-modulation) fluorometer. Most photophysiological parameters correlated with changes in environmental conditions quantified by differences in water quality along the gradient. For example, maximum quantum yield ( Fv/ Fm) increased and PAR-absorptivity decreased as water quality improved along the gradient from nearshore reefs (low irradiance, elevated nutrients and sediments) to outer islands (high irradiance, low nutrients and sediments). For apparent photosynthetic rate (PS max) and minimum saturating irradiance ( Ek), the direction of change differed depending on sampling depth, suggesting that different mechanisms of photo-acclimatisation operated between shallow and deep corals. Deep corals conformed to typical patterns of light/shade acclimatisation whereas shallow corals exhibited reduced PS max and Ek with improving water quality coinciding with greater heat dissipation (NPQ 241). Furthermore, deep corals on nearshore reefs exhibited elevated Q241 in comparison to outer islands possibly due to effects of sedimentation and/or pollutants rather than irradiance. These results highlight the importance of mesoscale sampling to obtain useful estimates of the variability of photophysiological parameters, particularly if such measures are to be used as bioindicators of the condition of coral reefs.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015BGeo...12..723O','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015BGeo...12..723O"><span>Authigenic apatite and octacalcium phosphate formation due to adsorption-precipitation switching across estuarine salinity gradients</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Oxmann, J. F.; Schwendenmann, L.</p> <p>2015-02-01</p> <p>Mechanisms governing phosphorus (P) speciation in coastal sediments remain largely unknown due to the diversity of coastal environments and poor analytical specificity for P phases. We investigated P speciation across salinity gradients comprising diverse ecosystems in a P-enriched estuary. To determine P load effects on P speciation we compared the high P site with a low P site. Octacalcium phosphate (OCP), authigenic apatite (carbonate fluorapatite, CFAP) and detrital apatite (fluorapatite) were quantitated in addition to Al/Fe-bound P (Al/Fe-P) and Ca-bound P (Ca-P). Gradients in sediment pH strongly affected P fractions across ecosystems and independent of the site-specific total P status. We found a pronounced switch from adsorbed Al/Fe-P to mineral Ca-P with decreasing acidity from land to sea. This switch occurred at near-neutral sediment pH and has possibly been enhanced by redox-driven phosphate desorption from iron oxyhydroxides. The seaward decline in Al/Fe-P was counterbalanced by the precipitation of Ca-P. Correspondingly, two location-dependent accumulation mechanisms occurred at the high P site due to the switch, leading to elevated Al/Fe-P at pH < 6.6 (landward; adsorption) and elevated Ca-P at pH > 6.6 (seaward; precipitation). Enhanced Ca-P precipitation by increased P loads was also evident from disproportional accumulation of metastable Ca-P (Ca-Pmeta) at the high P site. Here, sediments contained on average 6-fold higher Ca-Pmeta levels compared with the low P site, although these sediments contained only 2-fold more total Ca-P than the low P sediments. Phosphorus species distributions indicated that these elevated Ca-Pmeta levels resulted from transformation of fertilizer-derived Al/Fe-P to OCP and CFAP in nearshore areas. Formation of CFAP as well as its precursor, OCP, results in P retention in coastal zones and can thus lead to substantial inorganic P accumulation in response to anthropogenic P input.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29338034','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29338034"><span>Clonal growth strategy, diversity and structure: A spatiotemporal response to sedimentation in tropical Cyperus papyrus swamps.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Geremew, Addisie; Stiers, Iris; Sierens, Tim; Kefalew, Alemayehu; Triest, Ludwig</p> <p>2018-01-01</p> <p>Land degradation and soil erosion in the upper catchments of tropical lakes fringed by papyrus vegetation can result in a sediment load gradient from land to lakeward. Understanding the dynamics of clonal modules (ramets and genets) and growth strategies of plants on such a gradient in both space and time is critical for exploring a species adaptation and processes regulating population structure and differentiation. We assessed the spatial and temporal dynamics in clonal growth, diversity, and structure of an emergent macrophyte, Cyperus papyrus (papyrus), in response to two contrasting sedimentation regimes by combining morphological traits and genotype data using 20 microsatellite markers. A total of 636 ramets from six permanent plots (18 x 30 m) in three Ethiopian papyrus swamps, each with discrete sedimentation regimes (high vs. low) were sampled for two years. We found that ramets under the high sedimentation regime (HSR) were significantly clumped and denser than the sparse and spreading ramets under the low sedimentation regime (LSR). The HSR resulted in significantly different ramets with short culm height and girth diameter as compared to the LSR. These results indicated that C. papyrus ameliorates the effect of sedimentation by shifting clonal growth strategy from guerrilla (in LSR) to phalanx (in HSR). Clonal richness, size, dominance, and clonal subrange differed significantly between sediment regimes and studied time periods. Each swamp under HSR revealed a significantly high clonal richness (R = 0.80) as compared to the LSR (R = 0.48). Such discrepancy in clonal richness reflected the occurrence of initial and repeated seedling recruitment strategies as a response to different sedimentation regimes. Overall, our spatial and short-term temporal observations highlighted that HSR enhances clonal richness and decreases clonal subrange owing to repeated seedling recruitment and genets turnover.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5770036','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5770036"><span>Clonal growth strategy, diversity and structure: A spatiotemporal response to sedimentation in tropical Cyperus papyrus swamps</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Stiers, Iris; Sierens, Tim; Kefalew, Alemayehu; Triest, Ludwig</p> <p>2018-01-01</p> <p>Land degradation and soil erosion in the upper catchments of tropical lakes fringed by papyrus vegetation can result in a sediment load gradient from land to lakeward. Understanding the dynamics of clonal modules (ramets and genets) and growth strategies of plants on such a gradient in both space and time is critical for exploring a species adaptation and processes regulating population structure and differentiation. We assessed the spatial and temporal dynamics in clonal growth, diversity, and structure of an emergent macrophyte, Cyperus papyrus (papyrus), in response to two contrasting sedimentation regimes by combining morphological traits and genotype data using 20 microsatellite markers. A total of 636 ramets from six permanent plots (18 x 30 m) in three Ethiopian papyrus swamps, each with discrete sedimentation regimes (high vs. low) were sampled for two years. We found that ramets under the high sedimentation regime (HSR) were significantly clumped and denser than the sparse and spreading ramets under the low sedimentation regime (LSR). The HSR resulted in significantly different ramets with short culm height and girth diameter as compared to the LSR. These results indicated that C. papyrus ameliorates the effect of sedimentation by shifting clonal growth strategy from guerrilla (in LSR) to phalanx (in HSR). Clonal richness, size, dominance, and clonal subrange differed significantly between sediment regimes and studied time periods. Each swamp under HSR revealed a significantly high clonal richness (R = 0.80) as compared to the LSR (R = 0.48). Such discrepancy in clonal richness reflected the occurrence of initial and repeated seedling recruitment strategies as a response to different sedimentation regimes. Overall, our spatial and short-term temporal observations highlighted that HSR enhances clonal richness and decreases clonal subrange owing to repeated seedling recruitment and genets turnover. PMID:29338034</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29272714','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29272714"><span>Impact of heavy metal on activity of some microbial enzymes in the riverbed sediments: Ecotoxicological implications in the Ganga River (India).</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Jaiswal, Deepa; Pandey, Jitendra</p> <p>2018-04-15</p> <p>We studied the extracellular enzyme activity (EEA) in the riverbed sediment along a 518km gradient of the Ganga River receiving carbon and nutrient load from varied human sources. Also, we tested, together with substrate-driven stimulation, if the heavy metal accumulated in the sediment inhibits enzyme activities. Because pristine values are not available, we considered Dev Prayag, a least polluted site located 624km upstream to main study stretch, as a reference site. There were distinct increases in enzyme activities in the sediment along the study gradient from Dev Prayag, however, between-site differences were in concordance with sediment carbon(C), nitrogen (N) and phosphorus (P). Fluorescein diacetate hydrolysis (FDAase), β-glucosidase (Glu) and protease activities showed positive correlation with C, N and P while alkaline phosphatase was found negatively correlated with P. Enzyme activities were found negatively correlated with heavy metal, although ecological risk index (E R i ) varied with site and metal species. Dynamic fit curves showed significant positive correlation between heavy metal and microbial metabolic quotient (qCO 2 ) indicating a decrease in microbial activity in response to increasing heavy metal concentrations. This study forms the first report linking microbial enzyme activities to regional scale sediment heavy metal accumulation in the Ganga River, suggests that the microbial enzyme activities in the riverbed sediment were well associated with the proportion of C, N and P and appeared to be a sensitive indicator of C, N and P accumulation in the river. Heavy metal accumulated in the sediment inhibits enzyme activities, although C rich sediment showed relatively low toxicity due probably to reduced bioavailability of the metal. The study has relevance from ecotoxicological as well as from biomonitoring perspectives. Copyright © 2017 Elsevier Inc. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70037427','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70037427"><span>Sediment losses and gains across a gradient of livestock grazing and plant invasion in a cool, semi-arid grassland, Colorado Plateau, USA</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Belnap, J.; Reynolds, R.L.; Reheis, M.C.; Phillips, S.L.; Urban, F.E.; Goldstein, H.L.</p> <p>2009-01-01</p> <p>Large sediment fluxes can have significant impacts on ecosystems. We measured incoming and outgoing sediment across a gradient of soil disturbance (livestock grazing, plowing) and annual plant invasion for 9 years. Our sites included two currently ungrazed sites: one never grazed by livestock and dominated by perennial grasses/well-developed biocrusts and one not grazed since 1974 and dominated by annual weeds with little biocrusts. We used two currently grazed sites: one dominated by annual weeds and the other dominated by perennial plants, both with little biocrusts. Precipitation was highly variable, with years of average, above-average, and extremely low precipitation. During years with average and above-average precipitation, the disturbed sites consistently produced 2.8 times more sediment than the currently undisturbed sites. The never grazed site always produced the least sediment of all the sites. During the drought years, we observed a 5600-fold increase in sediment production from the most disturbed site (dominated by annual grasses, plowed about 50 years previously and currently grazed by livestock) relative to the never grazed site dominated by perennial grasses and well-developed biocrusts, indicating a non-linear, synergistic response to increasing disturbance types and levels. Comparing sediment losses among the sites, biocrusts were most important in predicting site stability, followed by perennial plant cover. Incoming sediment was similar among the sites, and while inputs were up to 9-fold higher at the most heavily disturbed site during drought years compared to average years, the change during the drought conditions was small relative to the large change seen in the sediment outputs. ?? 2009 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014NHESD...2.1693S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014NHESD...2.1693S"><span>Hydro morphodynamic modelling in Mediterranean storms: errors and uncertainties under sharp gradients</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sánchez-Arcilla, A.; Gracia, V.; García, M.</p> <p>2014-02-01</p> <p>This paper deals with the limits in hydrodynamic and morphodynamic predictions for semi-enclosed coastal domains subject to sharp gradients (in bathymetry, topography, sediment transport and coastal damages). It starts with an overview of wave prediction limits (based on satellite images) in a restricted domain such as is the Mediterranean basin, followed by an in-depth analysis of the Catalan coast, one of the land boundaries of such a domain. The morphodynamic modeling for such gradient regions is next illustrated with the simulation of the largest recorded storm in the Catalan coast, whose morphological impact is a key element of the storm impact. The driving wave and surge conditions produce a morphodynamic response that is validated against the pre and post storm beach state, recovered from two LIDAR images. The quality of the fit is discussed in terms of the physical processes and the suitability of the employed modeling equations. Some remarks about the role of the numerical discretization and boundary conditions are also included in the analysis. From here an assessment of errors and uncertainties is presented, with the aim of establishing the prediction limits for coastal engineering flooding and erosion analyses.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/pp/1792/','USGSPUBS'); return false;" href="https://pubs.usgs.gov/pp/1792/"><span>Geomorphic response of the Sandy River, Oregon, to removal of Marmot Dam</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Major, Jon J.; O'Connor, Jim E.; Podolak, Charles J.; Keith, Mackenzie K.; Grant, Gordon E.; Spicer, Kurt R.; Pittman, Smokey; Bragg, Heather M.; Wallick, J. Rose; Tanner, Dwight Q.; Rhode, Abagail; Wilcock, Peter R.</p> <p>2012-01-01</p> <p>The October 2007 breaching of a temporary cofferdam constructed during removal of the 15-meter (m)-tall Marmot Dam on the Sandy River, Oregon, triggered a rapid sequence of fluvial responses as ~730,000 cubic meters (m3) of sand and gravel filling the former reservoir became available to a high-gradient river. Using direct measurements of sediment transport, photogrammetry, airborne light detection and ranging (lidar) surveys, and, between transport events, repeat ground surveys of the reservoir reach and channel downstream, we monitored the erosion, transport, and deposition of this sediment in the hours, days, and months following breaching of the cofferdam. Rapid erosion of reservoir sediment led to exceptional suspended-sediment and bedload-sediment transport rates near the dam site, as well as to elevated transport rates at downstream measurement sites in the weeks and months after breaching. Measurements of sediment transport 0.4 kilometers (km) downstream of the dam site during and following breaching show a spike in the transport of fine suspended sediment within minutes after breaching, followed by high rates of suspended-load and bedload transport of sand. Significant transport of gravel bedload past the measurement site did not begin until 18 to 20 hours after breaching. For at least 7 months after breaching, bedload transport rates just below the dam site during high flows remained as much as 10 times above rates measured upstream of the dam site and farther downstream. The elevated sediment load was derived from eroded reservoir sediment, which began eroding when a meters-tall knickpoint migrated about 200 m upstream in the first hour after breaching. Rapid knickpoint migration triggered vertical incision and bank collapse in unconsolidated sand and gravel, leading to rapid channel widening. Over the following days and months, the knickpoint migrated upstream more slowly, simultaneously decreasing in height and becoming less distinct. Within 7 months, the knickpoint had migrated 2 km upstream from the dam site and became a riffle-like feature approximately 1 m high and a few tens of meters long. Knickpoint migration, vertical incision, and lateral erosion evacuated about 15 percent of the initial reservoir volume (125,000 m3) within 60 hours following breaching, and by the end of the high flows in May 2008, about 50 percent of the volume had been evacuated. Large stormflows in November 2008 and January 2009 eroded another 6 percent of the original volume of impounded sediment. Little additional sediment eroded during the remainder of the second year following breaching. The rapid erosion of sediment by the modest flow that accompanied dam breaching was driven mainly by the steep hydraulic gradient associated with the abrupt change of base level and knickpoint formation and was aided by the unconsolidated and cohesionless character of the reservoir sediment. In the ensuing months, transport competence diminished as channel geometry evolved and the river gradient through the reservoir reach diminished. Changes in profile gradient in conjunction with channel coarsening and widening led to a rapid slowing of the rate of reservoir erosion. Sediment transport and deposition were strongly controlled by channel-gradient discontinuities and valley morphology downstream of the dam site. Those influences led to a strong divergence of sand and gravel transport and to deposition of a sediment wedge, as much as 4 m thick, that tapered to the preremoval channel bed 1.3 km downstream of the dam site. After 2 years, that deposit contained about 25 percent of the total volume of sediment eroded from the reservoir. The balance was distributed among pools within the Sandy River gorge, a narrow bedrock canyon extending 2 to 9 km downstream of the dam site, and along the channel farther downstream. A two-fraction sediment budget for the first year following breaching indicates that most of the gravel eroded from the reservoir reach was deposited within the sediment wedge and within the gorge, whereas eroded sand largely passed through the gorge and was broadly dispersed farther downstream. The sequence of transporting flows affected the specific trajectory of reservoir erosion and downstream sediment transport during the 2 years following breaching. However, because the overall erosion was largely a consequence of knickpoint retreat and channel widening, which in the 2 years after removal had affected most of the reservoir reach, it is unlikely that the specific sequence of flows significantly affected the overall outcome. Because the knickpoint had largely passed through the reservoir within 2 years, and the remaining reservoir sediment is mostly isolated high above armored or bedrock banks, it is unlikely that substantial additional sediment from the reservoir site will enter the system unless very large flows occur. Continued channel evolution downstream of the dam site is probable as deposits formed in the first 2 years are episodically mobilized. Below the Sandy River gorge, detection of effects related to release of reservoir sediment is challenging, especially in areas of sand deposition, because of the high background supply of sand in the river and substantial channel dynamism.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4123917','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4123917"><span>Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Vigneron, Adrien; Cruaud, Perrine; Roussel, Erwan G.; Pignet, Patricia; Caprais, Jean-Claude; Callac, Nolwenn; Ciobanu, Maria-Cristina; Godfroy, Anne; Cragg, Barry A.; Parkes, John R.; Van Nostrand, Joy D.; He, Zhili; Zhou, Jizhong; Toffin, Laurent</p> <p>2014-01-01</p> <p>Subsurface sediments of the Sonora Margin (Guaymas Basin), located in proximity of active cold seep sites were explored. The taxonomic and functional diversity of bacterial and archaeal communities were investigated from 1 to 10 meters below the seafloor. Microbial community structure and abundance and distribution of dominant populations were assessed using complementary molecular approaches (Ribosomal Intergenic Spacer Analysis, 16S rRNA libraries and quantitative PCR with an extensive primers set) and correlated to comprehensive geochemical data. Moreover the metabolic potentials and functional traits of the microbial community were also identified using the GeoChip functional gene microarray and metabolic rates. The active microbial community structure in the Sonora Margin sediments was related to deep subsurface ecosystems (Marine Benthic Groups B and D, Miscellaneous Crenarchaeotal Group, Chloroflexi and Candidate divisions) and remained relatively similar throughout the sediment section, despite defined biogeochemical gradients. However, relative abundances of bacterial and archaeal dominant lineages were significantly correlated with organic carbon quantity and origin. Consistently, metabolic pathways for the degradation and assimilation of this organic carbon as well as genetic potentials for the transformation of detrital organic matters, hydrocarbons and recalcitrant substrates were detected, suggesting that chemoorganotrophic microorganisms may dominate the microbial community of the Sonora Margin subsurface sediments. PMID:25099369</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP41D..04S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP41D..04S"><span>Sediment-stabilizing and Destabilizing Ecoengineering Species from River to Estuary: the Case of the Scheldt System</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Selakovic, S.; Cozzoli, F.; Leuven, J.; Van Braeckel, A.; Speybroeck, J.; Kleinhans, M. G.; Bouma, T.</p> <p>2017-12-01</p> <p>Interactions between organisms and landscape forming processes play an important role in evolution of coastal landscapes. In particular, biota has a strong potential to interact with important geomorphological processes such as sediment dynamics. Although many studies worked towards quantifying the impact of different species groups on sediment dynamics, information has been gathered on an ad hoc base. Depending on species' traits and distribution, functional groups of ecoengineering species may have differential effects on sediment deposition and erosion. We hypothesize that the spatial distributions of sediment-stabilizing and destabilizing species across the channel and along the whole salinity gradient of an estuary partly determine the planform shape and channel-shoal morphology of estuaries. To test this hypothesis, we analyze vegetation and macrobenthic data taking the Scheldt river-estuarine continuum as model ecosystem. We identify species traits with important effects on sediment dynamics and use them to form functional groups. By using linearized mixed modelling, we are able to accurately describe the distributions of the different functional groups. We observe a clear distinction of dominant ecosystem engineering functional groups and their potential effects on the sediment in the river-estuarine continuum. The first results of longitudinal cross section show the highest effects of stabilizing plant species in riverine and sediment bioturbators in weak polyhaline part of continuum. The distribution of functional groups in transverse cross sections shows dominant stabilizing effect in supratidal zone compared to dominant destabilizing effect in the lower intertidal zone. This analysis offers a new and more general conceptualization of distributions of sediment stabilizing and destabilizing functional groups and their potential impacts on sediment dynamics, shoal patterns, and planform shapes in river-estuarine continuum. We intend to test this in future modelling and experiments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1986LNES....5..195W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1986LNES....5..195W"><span>Geothermal studies in oil field districts of North China</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wang, Ji-An; Wang, Ji-Yang; Yan, Shu-Zhen; Lu, Xiu-Wen</p> <p></p> <p>In North China, Tertiary sediments give the main oil-genetic series. The mean value of terrestrial heat flow density has been considered to be 60 - 65 mW/m2, and the geothermal gradient in Tertiary sediments usually ranges from 30 to 40° C/km in the region studied. Supposing that the onset of oil generation lies at about 90° C, the upper limit of the depth of oil-generation is at about 2000 to 2500 m depth. Recent paleogeothermal studies using vitrinite reflectance, clay and authigenic minerals, as well as other methods showed that in Eocene the geothermal gradient has been higher than at present. Some results were obtained and discussed.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70032734','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70032734"><span>Estimation and application of indicator values for common macroinvertebrate genera and families of the United States</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Carlisle, D.M.; Meador, M.R.; Moulton, S.R.; Ruhl, P.M.</p> <p>2007-01-01</p> <p>Tolerance of macroinvertebrate taxa to chemical and physical stressors is widely used in the analysis and interpretation of bioassessment data, but many estimates lack empirical bases. Our main objective was to estimate genus- and family-level indicator values (IVs) from a data set of macroinvertebrate communities, chemical, and physical stressors collected in a consistent manner throughout the United States. We then demonstrated an application of these IVs to detect alterations in benthic macroinvertebrate assemblages along gradients of urbanization in New England and Alabama. Principal components analysis (PCA) was used to create synthetic gradients of chemical stressors, for which genus- and family-level weighted averages (WAs) were calculated. Based on results of PCA, WAs were calculated for three synthetic gradients (ionic concentration, nutrient concentration, and dissolved oxygen/water temperature) and two uncorrelated physical variables (suspended sediment concentration and percent fines). Indicator values for each stress gradient were subsequently created by transforming WAs into ten ordinal ranks based on percentiles of values across all taxa. Mean IVs of genera and families were highly correlated to road density in Alabama and New England, and supported the conclusions of independent assessments of the chemical and physical stressors acting in each geographic area. Family IVs were nearly as responsive to urbanization as genus IVs. The limitations of widespread use of these IVs are discussed.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70014584','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70014584"><span>Biogeochemical cycling in an organic-rich coastal marine basin. 8. A sulfur isotopic budget balanced by differential diffusion across the sediment-water interface</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Chanton, J.P.; Martens, C.S.; Goldhaber, M.B.</p> <p>1987-01-01</p> <p>The sulfur isotopic composition of the sulfur fluxes occurring in the anoxic marine sediments of Cape Lookout Bight, N.C., U.S.A., was determined, and the result of isotopic mass balance was obtained via the differential diffusion model. Seasonal pore water sulfate ??34S measurements yielded a calculated sulfate input of 0.6%.. Sulfate transported into the sediments via diffusion appeared to be enriched in the lighter isotope because its concentration gradient was steeper, due to the increase in the measured isotopic composition of sulfate with depth. Similarly, the back diffusion of dissolved sulfide towards the sediment-water interface appeared enriched in the heavier isotope. The isotopic composition of this flux was calculated from measurements of the ??34S of dissolved sulfide and was determined to be 15.9%.. The isotopic composition of buried sulfide was determined to be -5.2%. and the detrital sulfur input was estimated to be -6.2%.. An isotope mass balance equation based upon the fluxes at the sediment-water interface successfully predicted the isotopic composition of the buried sulfur flux within 0.5%., thus confirming that isotopes diffuse in response to their individual concentration gradients. ?? 1987.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1999Geomo..31..337A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1999Geomo..31..337A"><span>Source-to-sink sediment transfers, environmental engineering and hazard mitigation in the steep Var River catchment, French Riviera, southeastern France</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Anthony, Edward J.; Julian, Maurice</p> <p>1999-12-01</p> <p>Steep coastal margins are potentially subject to mass wasting processes involving notable landslide activity and sediment evacuation downstream by steep-gradient streams. Sediment transfer from short source-to-sink segments, coupled with mountain hydrological regimes, regulate patterns of river channel aggradation and coastal sediment supply in such geomorphic settings. On the steep French Riviera margin, sediment transfers from existing landslides or from various minor mass wasting processes to stream channels may result following bursts of heavy, concentrated rainfall. High-magnitude flooding and massive sediment transport downstream are generally related to unpredictable extreme rainfalls. Both mass movements and channel sediment storage pose serious hazards to downvalley settlements and infrastructure. A consideration of channel sediment storage patterns in the Var River catchment, the most important catchment in this area, highlights two important shortcomings relative to environmental engineering and hazard mitigation practices. In the first place, the appreciation of geomorphic processes is rather poor. This is illustrated by the undersized nature of engineering works constructed to mitigate hazards in the upstream bedload-dominated channels, and by the unforeseen effects that ten rock dams, constructed in the early 1970s, have had on downstream and coastal sediment storage and on sediment dispersal patterns and, consequently, valley flooding. Secondly, planners and environmental engineers have lacked foresight in valley and coastal management issues on this steep setting, notably as regards the reclaimed areas of the lower Var channel and delta liable to flooding. Urbanization and transport and environmental engineering works have progressively affected patterns of storage and transport of fine-grained sediments in the lower Var channel and delta. Meanwhile the problems raised by these changes have not been adequately addressed in terms of scientific research. A necessary future step in bettering the engineering solutions implemented to contain natural hazards or to harness water and sediment resources is that of fine-scale analysis of source-to-sink sediment transfer processes, of sediment budgets, of time-scales of storage in stream channels, and, finally, of high-magnitude hydrometeorological forcing events in this area. The way all these aspects have been modulated by engineering practices and socioeconomic development should also be an important part of such an analysis.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70015391','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70015391"><span>Subsurface temperatures and geothermal gradients on the North Slope, Alaska</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Collett, Timothy S.; Bird, Kenneth J.; Magoon, Leslie B.</p> <p>1989-01-01</p> <p>Geothermal gradients as interpreted from a series of high-resolution stabilized well-bore-temperature surveys from 46 North Slope, Alaska, wells vary laterally and vertically throughout the near-surface sediment (0-2,000 m). The data from these surveys have been used in conjunction with depths of ice-bearing permafrost, as interpreted from 102 well logs, to project geothermal gradients within and below the ice-bearing permafrost sequence. The geothermal gradients calculated from the projected temperature profiles are similar to the geothermal gradients measured in the temperature surveys. Measured and projected geothermal gradients in the ice-bearing permafrost sequence range from 1.5??C/100m in the Prudhoe Bay area to 5.1??C/100m in the National Petroleum Reserve in Alaska (NPRA).</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/25441','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/25441"><span>Estimating sediment yield in the southern Appalachians using WCS-SED</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Paul Bolstad; Andrew Jenks; Mark Riedel; James M. Vose</p> <p>2006-01-01</p> <p>We measured and modeled sediment yield over two months on five watersheds in the southern Appalachian Mountains of North Carolina. These watersheds contained first and second-order streams and are primarily forested, but span the development gradient common in this region, with up to 10 percent in suburban and transitional development and up to 27% low-intensity...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=80329&keyword=computer+AND+tomography&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=80329&keyword=computer+AND+tomography&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>APPLICATION OF COMPUTER-AIDED TOMOGRAPHY (CAT) AS A POTENTIAL INDICATOR OF MARINE MARCO BENTHIC ACTIVITY ALONG POLLUTION GRADIENTS</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Sediment cores were imaged using a local hospital CAT scanner. These image data were transferred to a personal computer at our laboratory using specially developed software. Previously, we reported an inverse correlation (r2 = 0.98, P<0.01) between the average sediment x-ray atte...</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_9");'>9</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li class="active"><span>11</span></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_11 --> <div id="page_12" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li class="active"><span>12</span></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="221"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/8475','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/8475"><span>WinXSPRO, a channel cross section analyzer, User's Manual, Version 3.0</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Thomas Hardy; Palavi Panja; Dean Mathias</p> <p>2005-01-01</p> <p>WinXSPRO is an interactive Windows software package designed to analyze stream channel cross section data for geometric, hydraulic, and sediment transport parameters. WinXSPRO was specifically developed for use in high-gradient streams (gradient > 0.01) and supports four alternative resistance equations for computing boundary roughness and resistance to flow. Cross...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24084872','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24084872"><span>Assessment of mercury bioavailability to benthic macroinvertebrates using diffusive gradients in thin films (DGT).</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Amirbahman, Aria; Massey, Delia I; Lotufo, Guilherme; Steenhaut, Nicholas; Brown, Lauren E; Biedenbach, James M; Magar, Victor S</p> <p>2013-10-01</p> <p>Mercury-specific diffusive gradient in thin films (DGTs) were used in laboratory microcosms as a biomonitoring tool to assess the lability of mercury (Hg) total and monomethylmercury Hg (MeHg), and to develop a relationship between chemical lability and bioavailability in estuarine sediments. Time-series deployment of DGTs in sediments showed that sediment-bound MeHg is more labile than sediment-bound inorganic Hg. In subsequent experiments, DGTs were deployed simultaneously with three benthic macroinvertebrates (the estuarine amphipod, Leptocheirus plumulosus; the estuarine polychaete, Nereis virens; and the marine clam, Macoma nasuta) in sediments for up to 55 days. All organisms and their co-deployed DGTs exhibited an initial period of rapid Hg uptake followed by slower uptake reaching apparent steady state. Strong correlative relationships were generally observed between paddle-type DGTs and macroinvertebrate tissue data (r(2) between 0.57 and 0.97). Further, %MeHg:Total Hg ratios for M. nasuta and N. virens (38.5 ± 12.2 and 19.2 ± 5.2) were similar to their corresponding ratios for the DGTs (33.1 ± 13.3 and 24.4 ± 11.0), and they were significantly higher than the same ratios for sediment (2.9 ± 0.3) and pore water (8.5 ± 4.9). The %MeHg:Total Hg ratios for L. plumulosus (68.5 ± 6.2) were significantly higher than those for the DGTs. This may be because the tissue and DGT data for this organism were not truly co-located as L. plumulosus burrows close to the sediment surface, and the DGTs sampled the sediment surface. Overall, our results suggest that for benthic macroinvertebrates in estuarine sediments studied here, (a) sediment MeHg is more bioavailable than inorganic Hg, (b) sediment and pore-water concentration measurements are not good predictors for the extent of bioaccumulation of Hg species, and (c) DGTs are an effective biomonitoring tool for the assessment of bioavailability of Hg species.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013EGUGA..15.6723C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013EGUGA..15.6723C"><span>Diversity and composition of sediment bacteria in subtropical coastal wetlands of North Stradbroke Island, Queensland, Australia</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Chuvochina, Maria; Sampayo, Eugenia; Welti, Nina; Hayes, Matthew; Lu, Yang; Lovelock, Catherine; Lockington, David</p> <p>2013-04-01</p> <p>Coastal wetlands provide a wide variety of important ecosystem services but continue to suffer disturbance, degradation and deforestation. Sediment bacteria are responsible for major nutrient transformation and recycling in these ecosystems. Insight into microbial community composition and the factors that determine them may improve our understanding of biogeochemical processes, food web dynamics, biodegradation processes and, thus, help to develop the management strategies for preserving the ecosystem health and services. Characterizing shifts in community taxa along environmental gradients has been shown to provide a useful tool for determining the major drivers affecting community structure and function. North Stradbroke Island (NSI) in Southern Queensland presents considerable habitat diversity including variety of groundwater dependent ecosystems such as lakes, swamps, sedge-like salt marshes and mangroves. Ecological responses of continuous groundwater extraction for municipal purposes and sand mining operations on NSI are still need to be assessed in order to protect its unique environment. Changes in coastal hydrology due to either climate change or human activity may directly affect microbial populations and, thus, biogeochemical cycles of nutrients. These may result in altering/losing some ecosystem services provided by coastal wetlands. In this study we examine microbial diversity and determine environmental controls on bacterial community structure along a natural transition from freshwater forested wetland (melaleuca woodland), sedge-like salt marsh and into mangroves located at NSI. The study area is characterized by significant groundwater flow, nutrient limitation and sharp transition from one ecosystem type to another. Sediment cores (0-5 cm and 20-25 cm depth) were collected from three representative sites of each zone (mangroves - salt marsh - freshwater wetland) along the salinity gradient in August 2012. Subsamples were set aside for use in chemical analyses, microbiological analysis and for porewater extraction. Microbial community structure and diversity are assessed using denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments and barcoded pyrosequencing. To evaluate the relationships between microbial communities and environmental variables we use bioinformatical and statistical tools. Physico-chemical parameters included measurements of sediment pH, temperature, salinity and nutrients composition. Background information regarding hydrology and vegetation is incorporated in the study. Sediment bacteria play a vital role in wetland ecological function, and they are very sensitive to environmental changes. Considering coastal wetlands of NSI as a model area, our study may contribute to the knowledge of factors shaping microbial diversity in tropical wetlands, help to gain insight into the microbe-nutrient-plant relationships, and also serve as background for conservation plans to safeguard these ecosystems.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70012248','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70012248"><span>Sedimentology and geochemistry of surface sediments, outer continental shelf, southern Bering Sea</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Gardner, J.V.; Dean, W.E.; Vallier, T.L.</p> <p>1980-01-01</p> <p>Present-day sediment dynamics, combined with lowerings of sea level during the Pleistocene, have created a mixture of sediments on the outer continental shelf of the southern Bering Sea that was derived from the Alaskan Mainland, the Aleutian Islands, and the Pribilof ridge. Concentrations of finer-grained, higher-organic sediments in the region of the St. George basin have further modified regional distribution patterns of sediment composition. Q-mode factor analysis of 58 variables related to sediment size and composition - including content of major, minor, and trace elements, heavy and light minerals, and clay minerals - reveals three dominant associations of sediment: 1. (1) The most significant contribution, forming a coarse-grained sediment scattered over most of the shelf consists of felsic sediment derived from the generally quartz-rich rocks of the Alaskan mainland. This sediment contains relatively high concentrations of Si, Ba, Rb, quartz, garnet, epidote, metamorphic rock fragments, potassium feldspar, and illite. 2. (2) The next most important group, superimposed on the felsic group consists of andesitic sediment derived from the Aleutian Islands. This more mafic sediment contains relatively high concentrations of Na, Ca, Ti, Sr, V, Mn, Cu, Fe, Al, Co, Zn, Y, Yb, Ga, volcanic rock fragments, glass, clinopyroxene, smectite, and vermiculite. 3. (3) A local group of basaltic sediment, derived from rocks of the Pribilof Islands, is a subgroup of the Aleutian andesite group. Accumulation of fine-grained sediment in St. George basin has created a sediment group containing relatively high concentrations of C, S, U, Li, B, Zr, Ga, Hg, silt, and clay. Sediment of the Aleutian andesite group exhibits a strong gradient, or "plume", with concentrations decreasing away from Unimak Pass and toward St. George basin. The absence of present-day currents sufficient to move even clay-size material as well as the presence of Bering submarine canyon between the Aleutian Islands and the outer continental shelf and slope, indicates that Holocene sediment dynamics cannot be used to explain the observed distribution of surface sediment derived from the Aleutian Islands. We suggest that this pattern is relict and resulted from sediment dynamics during lower sea levels of the Pleistocene. ?? 1980.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3055910','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3055910"><span>Size and Shape of Protein Molecules at the Nanometer Level Determined by Sedimentation, Gel Filtration, and Electron Microscopy</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p></p> <p>2009-01-01</p> <p>An important part of characterizing any protein molecule is to determine its size and shape. Sedimentation and gel filtration are hydrodynamic techniques that can be used for this medium resolution structural analysis. This review collects a number of simple calculations that are useful for thinking about protein structure at the nanometer level. Readers are reminded that the Perrin equation is generally not a valid approach to determine the shape of proteins. Instead, a simple guideline is presented, based on the measured sedimentation coefficient and a calculated maximum S, to estimate if a protein is globular or elongated. It is recalled that a gel filtration column fractionates proteins on the basis of their Stokes radius, not molecular weight. The molecular weight can be determined by combining gradient sedimentation and gel filtration, techniques available in most biochemistry laboratories, as originally proposed by Siegel and Monte. Finally, rotary shadowing and negative stain electron microscopy are powerful techniques for resolving the size and shape of single protein molecules and complexes at the nanometer level. A combination of hydrodynamics and electron microscopy is especially powerful. PMID:19495910</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28712078','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28712078"><span>Effects-based spatial assessment of contaminated estuarine sediments from Bear Creek, Baltimore Harbor, MD, USA.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hartzell, Sharon E; Unger, Michael A; McGee, Beth L; Wilson, Sacoby M; Yonkos, Lance T</p> <p>2017-10-01</p> <p>Estuarine sediments in regions with prolonged histories of industrial activity are often laden to significant depths with complex contaminant mixtures, including trace metals and persistent organic pollutants. Given the complexity of assessing risks from multi-contaminant exposures, the direct measurement of impacts to biological receptors is central to characterizing contaminated sediment sites. Though biological consequences are less commonly assessed at depth, laboratory-based toxicity testing of subsurface sediments can be used to delineate the scope of contamination at impacted sites. The extent and depth of sediment toxicity in Bear Creek, near Baltimore, Maryland, USA, was delineated using 10-day acute toxicity tests with the estuarine amphipod Leptocheirus plumulosus, and chemical analysis of trace metals and persistent organic pollutants. A gradient of toxicity was demonstrated in surface sediments with 21 of 22 tested sites differing significantly from controls. Effects were most pronounced (100% lethality) at sites proximate to a historic industrial complex. Sediments from eight of nine core samples to depths of 80 cm were particularly impacted (i.e., caused significant lethality to L. plumulosus) even in locations overlain with relatively non-toxic surface sediments, supporting a conclusion that toxicity observed at the surface (top 2 cm) does not adequately predict toxicity at depth. In seven of nine sites, toxicity of surface sediments differed from toxicity at levels beneath by 28 to 69%, in five instances underestimating toxicity (28 to 69%), and in two instances overestimating toxicity (44 to 56%). Multiple contaminants exceeded sediment quality guidelines and correlated positively with toxic responses within surface sediments (e.g., chromium, nickel, polycyclic aromatic hydrocarbon (PAH), total petroleum hydrocarbon). Use of an antibody-based PAH biosensor revealed that porewater PAH concentrations also increased with depth at most sites. This study informs future management decisions concerning the extent of impact to Bear Creek sediments, and demonstrates the benefits of a spatial approach, relying primarily on toxicity testing to assess sediment quality in a system with complex contaminant mixtures.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19.6933K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19.6933K"><span>Large Eddy Simulations of Compositional Density Currents Flowing Over a Mobile Bed</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kyrousi, Foteini; Zordan, Jessica; Leonardi, Alessandro; Juez, Carmelo; Zanello, Francesca; Armenio, Vincenzo; Franca, Mário J.</p> <p>2017-04-01</p> <p>Density currents are a ubiquitous phenomenon caused by natural events or anthropogenic activities, and play an important role in the global sediment cycle; they are agents of long distance sediment transport in lakes, seas and oceans. Density gradients induced by salinity, temperature differences, or by the presence of suspended material are all possible triggers of a current. Such flows can travel long distances while eroding or depositing bed materials. This can provoke rapid topological changes, which makes the estimation of their transport capacity of prime interest for environmental engineering. Despite their relevance, field data regarding their dynamics is limited due to density currents scattered and unpredictable occurrence in nature. For this reason, laboratory experiments and numerical simulations have been a preferred way to investigate sediment transport processes associated to density currents. The study of entrainment and deposition processes requires detailed data of velocities spatial and temporal distributions in the boundary layer and bed shear stress, which are troublesome to obtain in laboratory. Motivated by this, we present 3D wall-resolved Large Eddy Simulations (LES) of density currents generated by lock-exchange. The currents travel over a smooth flat bed, which includes a section composed by erodible fine sediment susceptible of eroding. Several sediment sizes and initial density gradients are considered. The grid is set to resolve the velocity field within the boundary layer of the current (a tiny fraction of the total height), which in turn allows to obtain predictions of the bed shear stress. The numerical outcomes are compared with experimental data obtained with an analogous laboratory setting. In laboratory experiments salinity was chosen for generating the initial density gradient in order to facilitate the identification of entrained particles, since salt does not hinder the possibility to track suspended particles. Under these circumstances, it is possible to focus alone on the effect of the dynamics of the current on the particles entrainment. To achieve this, LES-filtered Navier-Stokes equations are coupled with two scalar transport equations: one for salinity and one for sediment concentration. We discuss the use of different sediment pick-up and settling formulations, which are key factors in reproducing the correct erosion and sedimentation mechanisms. The simulations show the emergence of longitudinal bed forms, and highlight the role of turbulent structures in the entrainment pattern for different regions within the current.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011AGUFMEP51A0829P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011AGUFMEP51A0829P"><span>Analysis of Fluvial Bed Sediments Along the Apalachicola River, Florida through Field Reconnaissance Studies</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Passeri, D.; Hagen, S. C.; Daranpob, A.; Smar, D. E.</p> <p>2011-12-01</p> <p>River competence is an important parameter in understanding sediment transport in fluvial systems. Competence is defined as the measure of a stream's ability to transport a certain maximum grain size of sediment. Studies have shown that bed sediment particle size in rivers and streams tends to vary spatially along the direction of stream flow. Over a river section several reaches long, variability of sediment particle sizes can be seen, often becoming finer downstream. This phenomenon is attributed to mechanisms such as local control of stream gradient, coarse tributary sediment supply or particle breakdown. Average particle size may also be smaller in tributary sections of rivers due to river morphology. The relationship between river mean velocity and particle size that can be transported has also been explored. The Hjulstrom curve classifies this relationship by relating particle size to velocity, dividing the regions of sedimentation, transportation, and erosion. The curve can also be used to find values such as the critical erosion velocity (the velocity required to transport particles of various sizes in suspension) and settling velocity (the velocity at which particles of a given size become too heavy to be transported and fall out of suspension, consequently causing deposition). The purpose of this research is to explore the principles of river competence through field reconnaissance collection and laboratory analysis of fluvial sediment core samples along the Apalachicola River, FL and its distributaries. Sediment core samples were collected in the wetlands and estuarine regions of the Apalachicola River. Sieve and hydrometer analyses were performed to determine the spatial distribution of particle sizes along the river. An existing high resolution hydrodynamic model of the study domain was used to simulate tides and generate river velocities. The Hjulstrom curve and the generated river velocities were used to define whether sediment was being transported, eroded or deposited at the different locations in the river and its distributaries. Parameters such as critical erosion velocity and settling velocity were also calculated to describe sediment transport along the channel. This research provides a better understanding of the fluvial geomorphic system, particularly sediment transport in channels. It also provides excellent validation data for future sediment transport studies in similar fluvial study domains.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=20040121091&hterms=protein&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D80%26Ntt%3Dprotein','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=20040121091&hterms=protein&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D80%26Ntt%3Dprotein"><span>Using Magnetic Fields to Control Convection during Protein Crystallization: Analysis and Validation Studies</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Ramachandran, N.; Leslie, F. W.</p> <p>2004-01-01</p> <p>The effect of convection during the crystallization of proteins is not very well understood. In a gravitational field, convection is caused by crystal sedimentation and by solutal buoyancy induced flow and these can lead to crystal imperfections. While crystallization in microgravity can approach diffusion limited growth conditions (no convection), terrestrially strong magnetic fields can be used to control fluid flow and sedimentation effects. In this work, we develop the analysis for magnetic flow control and test the predictions using analog experiments. Specifically, experiments on solutal convection in a paramagnetic fluid were conducted in a strong magnetic field gradient using a dilute solution of Manganese Chloride. The observed flows indicate that the magnetic field can completely counter the settling effects of gravity locally and are consistent with the theoretical predictions presented. This phenomenon suggests that magnetic fields may be useful in mimicking the microgravity environment of space for some crystal growth ana biological applications where fluid convection is undesirable.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22367364','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22367364"><span>The New Bedford Harbor Superfund site long-term monitoring program (1993-2009).</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Nelson, William G; Bergen, Barbara J</p> <p>2012-12-01</p> <p>New Bedford Harbor (NBH), located in southeastern Massachusetts, was designated as a marine Superfund site in 1983 due to sediment contamination by polychlorinated biphenyls (PCBs). Based on risks to human health and the environment, the first two phases of the site cleanup involved dredging PCB-contaminated sediments from the harbor. Therefore, a long-term monitoring program (LTM) was developed to measure spatial and temporal chemical and biological changes in sediment, water, and biota to assess the effects and effectiveness of the remedial activities. A systematic, probabilistic sampling design was used to select sediment sampling stations. This unbiased design allowed the three segments of the harbor to be compared spatially and temporally to quantify changes resulting from dredging the contaminated sediments. Sediment was collected at each station, and chemical (e.g., PCBs and metals), physical (e.g., grain size), and biological (e.g., benthic community) measurements were conducted on all samples. This paper describes the overall NBH-LTM approach and the results from the five rounds of sample collections. There is a decreasing spatial gradient in sediment PCB concentrations from the northern boundary (upper harbor) to the southern boundary (outer harbor) of the site. Along this same transect, there is an increase in biological condition (e.g., benthic community diversity). Temporally, the contaminant and biological gradients have been maintained since the 1993 baseline collection; however, since the onset of full-scale remediation, PCB concentrations have decreased throughout the site, and one of the benthic community indices has shown significant improvement in the lower and outer harbor areas.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013CG.....51...22N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013CG.....51...22N"><span>Evaluation of gravitational gradients generated by Earth's crustal structures</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Novák, Pavel; Tenzer, Robert; Eshagh, Mehdi; Bagherbandi, Mohammad</p> <p>2013-02-01</p> <p>Spectral formulas for the evaluation of gravitational gradients generated by upper Earth's mass components are presented in the manuscript. The spectral approach allows for numerical evaluation of global gravitational gradient fields that can be used to constrain gravitational gradients either synthesised from global gravitational models or directly measured by the spaceborne gradiometer on board of the GOCE satellite mission. Gravitational gradients generated by static atmospheric, topographic and continental ice masses are evaluated numerically based on available global models of Earth's topography, bathymetry and continental ice sheets. CRUST2.0 data are then applied for the numerical evaluation of gravitational gradients generated by mass density contrasts within soft and hard sediments, upper, middle and lower crust layers. Combined gravitational gradients are compared to disturbing gravitational gradients derived from a global gravitational model and an idealised Earth's model represented by the geocentric homogeneous biaxial ellipsoid GRS80. The methodology could be used for improved modelling of the Earth's inner structure.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70189666','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70189666"><span>Inundation, vegetation, and sediment effects on litter decomposition in Pacific Coast tidal marshes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Janousek, Christopher; Buffington, Kevin J.; Guntenspergen, Glenn R.; Thorne, Karen M.; Dugger, Bruce D.; Takekawa, John Y.</p> <p>2017-01-01</p> <p>The cycling and sequestration of carbon are important ecosystem functions of estuarine wetlands that may be affected by climate change. We conducted experiments across a latitudinal and climate gradient of tidal marshes in the northeast Pacific to evaluate the effects of climate- and vegetation-related factors on litter decomposition. We manipulated tidal exposure and litter type in experimental mesocosms at two sites and used variation across marsh landscapes at seven sites to test for relationships between decomposition and marsh elevation, soil temperature, vegetation composition, litter quality, and sediment organic content. A greater than tenfold increase in manipulated tidal inundation resulted in small increases in decomposition of roots and rhizomes of two species, but no significant change in decay rates of shoots of three other species. In contrast, across the latitudinal gradient, decomposition rates of Salicornia pacifica litter were greater in high marsh than in low marsh. Rates were not correlated with sediment temperature or organic content, but were associated with plant assemblage structure including above-ground cover, species composition, and species richness. Decomposition rates also varied by litter type; at two sites in the Pacific Northwest, the grasses Deschampsia cespitosa and Distichlis spicata decomposed more slowly than the forb S. pacifica. Our data suggest that elevation gradients and vegetation structure in tidal marshes both affect rates of litter decay, potentially leading to complex spatial patterns in sediment carbon dynamics. Climate change may thus have direct effects on rates of decomposition through increased inundation from sea-level rise and indirect effects through changing plant community composition.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/5358906-petroleum-prospects-benue-trough-nigeria','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/5358906-petroleum-prospects-benue-trough-nigeria"><span>Petroleum prospects of Benue trough, Nigeria</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Nawachukwu, J.I.</p> <p>1985-04-01</p> <p>Exploration activities in the Benue trough have been minimal over the years, mainly because of large petroleum deposits found in the adjoining Niger delta and early gas finds in the Anambra basin, south of the Benue trough. The recent increase in exploration activities in the trough has necessitated a reevaluation of the petroleum potentials of the basin. In this study, the time-temperature index (TTI) method was used to evaluate petroleum prospects of the basin. An increase in geothermal gradient resulted in a decrease in depth to the oil window, with the sediments maturing earlier at higher geothermal gradients. At geothermalmore » gradients of 1.5-1.9/sup 0/F/100 ft (2.73.5/sup 0/C/100 m) and maximum TTI values, the Asu River Group and the Eze-Aku Group of sediments are still within the gas-generating stage. The Awgu Shale and the Nkporo Shale are capable of generating gas at geothermal gradients of 2.3-2.7/sup 0/F/100 ft (4.2-4.9/sup 0/C/100 m). The Benue trough is essentially a gas-condensate basin with little oil. Exploration targets in the basin include both the sub-Santonian and superSantonian sediments, with the Eze-Aku Group, Awgu Shale, and Nkporo Shale being more prospective than the stratigraphically lower Asu River Group. In general, the middle Benue trough is considered to be the most prospective area within the trough because depths to the mature zones are moderate (6,600-13,000 ft; 2-4 km). These depths are variable, decreasing northeastward and increasing southwestward toward the Niger delta.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009AGUFMNH44A..02K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009AGUFMNH44A..02K"><span>The early warning system of landslides and sediment runoffs using meteorological condition including rainfall-soil moisture index (Invited)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kubota, T.; Silva, I. C.; Hasnawir, H.</p> <p>2009-12-01</p> <p>The research including observation of rain, soil moisture content and sediment discharge is conducted on a torrent in northern Kyushu whose geology consists of Paleozoic metamorphic rocks (mainly schist) and whose vegetation consists of mainly Japanese cypress and cedar. Soil depth is approximately 50cm in average and permeability k is 0.1~0.01 order. With data obtained by the observation for more than 4 years, standard rainfalls of warning and evacuation against the sudden sediment runoffs are analyzed. Then, the result was compared with the ones in Nuevo Leon Mexico (geology of schist, slate, k=0.01~0.001 order) and in southern Sulawesi Island Indonesia (volcanic geology, k=0.001~0.0001 order). Hitherto, various methods were proposed to analyze the warning critical standard for landslide disaster or large sediment discharge. In this study, we employed Hirano's element slope runoff theory, the Self Organized Criticality Assumption (SOC), and the Elementary Catastrophe Theory (ETC) to analyze the data, although the soil moisture fluctuation, meteorological condition such as upper air wind and dew point depression, the rainfall-soil moisture index provided by Japan Meteorological Agency was considered. The last one is a cutting edge technology based on the tank model calculation of soil moisture content combined with short term rainfall prediction which is a product of numerical simulation using radar image advection analysis compensated with surface rain data and with orographic rain effect. In Hirano's theory, we can describe the critical rain Rc and rain intensity Ric as following equation. Q/A/M/ cosθ = Ri ∫(r*cosθ)dt = Ri*R (1) ∴ Ric*Rc = C (2) Here, Q: sediment runoff or debris flow discharge, A: watershed area, M: function concerning with sediment deposit features on the upstream torrents or slopes (porosity, torrent bed slope gradient, sediment accumulation length and depth, cohesion), t: time, θ: torrent bed or hillside slope gradient, r: instant precipitation. C: constant, given as 8000 in Fukuoka (Kyushu, Japan), as 3750 in Sierra Madere Oriental (Nuevo Leon, Mexico), as 9000 in southern Sulawesi(Indonesia). Consequently, the forecast-warning system which has enough accuracy of 80% against sediment runoffs or debris flows for both wide range region with meteorological conditions and narrow region with the critical rain standard are established. However, in the region with lower soil permeability we may revise the standard rain by the compensation with the soil moisture content response such as increasing rate.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70025793','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70025793"><span>Identification of linear and threshold responses in streams along a gradient of urbanization in Anchorage, Alaska</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Ourso, R.T.; Frenzel, S.A.</p> <p>2003-01-01</p> <p>We examined biotic and physiochemical responses in urbanized Anchorage, Alaska, to the percent of impervious area within stream basins, as determined by high-resolution IKONOS satellite imagery and aerial photography. Eighteen of the 86 variables examined, including riparian and instream habitat, macroinvertebrate communities, and water/sediment chemistry, were significantly correlated with percent impervious area. Variables related to channel condition, instream substrate, water chemistry, and residential and transportation right-of-way land uses were identified by principal components analysis as significant factors separating site groups. Detrended canonical correspondence analysis indicated that the macroinvertebrate communities responded to an urbanization gradient closely paralleling the percent of impervious area within the subbasin. A sliding regression analysis of variables significantly correlated with percent impervious area revealed 8 variables exhibiting threshold responses that correspond to a mean of 4.4-5.8% impervious area, much lower than mean values reported in other, similar investigations. As contributing factors to a subbasin's impervious area, storm drains and roads appeared to be important elements influencing the degradation of water quality with respect to the biota.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70025402','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70025402"><span>Magnitude and variability of Holocene sediment accumulation in Santa Monica Bay, California</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Sommerfield, C.K.; Lee, H.J.</p> <p>2003-01-01</p> <p>The spatial variability of Holocene (past 10,000 years) sediment accumulation in Santa Monica Bay (California) was examined to identify controls sediment trapping in a bathymetrically complex coastal embayment and to provide geologic context for the post-industrial sedimentary record and associated pollution gradients. Sediment chronologies based on downcore AMS 14C dates were used to quantify long-term (millennia) accumulation rates in an effort to elucidate particle-transport pathways and sinks. Sediment accumulation rates for the full range of bayfloor environments (50-630 m water depths) range from 22 to 102 mg/cm2/year (15-88 mm/100 year), have an overall mean of 51??21 mg/cm2/year (1??, n=11), and are comparable to rates reported for adjacent borderland basins. Maximal accumulation rates on the Malibu shelf and within a reentrant to Redondo canyon are interpreted to reflect (1) proximity to sediment sources and (2) localized oceanographic and topographic conditions conducive to sediment trapping and deposition. The 14C-derived accumulation rates are 2-10 times lower than rates determined through 210Pb geochronology for the same sites in a related study, revealing that Holocene sediment accumulation has been non-steady-state. Santa Monica Bay is an important sink for suspended matter; averaged over the past several millennia a mass of sediment equivalent to 10-80% of the modern annual river supply is sequestered yearly. Net influx of suspended matter derived from the adjacent Palos Verdes shelf is evinced by a concentration gradient of p,p???-DDE in bayfloor sediments, whereas the distribution of anthropogenic silver suggests transport from Santa Monica shelf to the southeastern boundary of the bay. The results of this study provide new insight to the long-term fates of particulate matter in Los Angeles coastal waters. ?? 2003 Elsevier Science Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26428003','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26428003"><span>Mercury Distribution in the Deûle River (Northern France) Measured by the Diffusive Gradients in Thin Films Technique and Conventional Methods.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Diviš, Pavel; Kadlecová, Milada; Ouddane, Baghdad</p> <p>2016-05-01</p> <p>The distribution of mercury in surface water and in sediment from Deûle River in Northern France was studied by application of conventional sampling methods and by diffusive gradients in thin films technique (DGT). Concentration of total dissolved mercury in surface water was 20.8 ± 0.8 ng l(-1). The particulate mercury concentration was 6.2 ± 0.6 µg g(-1). The particulate mercury was accumulated in sediment (9.9 ± 2.3 mg kg(-1)), and it was transformed by methylating bacteria to methylmercury, mainly in the first 2-cm layer of the sediment. Total dissolved concentration of mercury in sediment pore water obtained by application of centrifugation extraction was 17.6 ± 4.1 ng l(-1), and it was comparable with total dissolved pore water mercury concentration measured by DGT probe containing Duolite GT-73 resin gel (18.2 ± 4.3 ng l(-1)), taking the sediment heterogeneity and different principles of the applied methods into account. By application of two DGT probes with different resin gels specific for mercury, it was found that approximately 30% of total dissolved mercury in sediment pore water was present in labile forms easy available for biota. The resolution of mercury DGT depth profiles was 0.5 cm, which allows, unlike conventional techniques, to study the connection of the geochemical cycle of mercury with geochemical cycles of iron and manganese.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EnMan..50...50S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EnMan..50...50S"><span>Evaluation of Deposited Sediment and Macroinvertebrate Metrics Used to Quantify Biological Response to Excessive Sedimentation in Agricultural Streams</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sutherland, Andrew B.; Culp, Joseph M.; Benoy, Glenn A.</p> <p>2012-07-01</p> <p>The objective of this study was to evaluate which macroinvertebrate and deposited sediment metrics are best for determining effects of excessive sedimentation on stream integrity. Fifteen instream sediment metrics, with the strongest relationship to land cover, were compared to riffle macroinvertebrate metrics in streams ranging across a gradient of land disturbance. Six deposited sediment metrics were strongly related to the relative abundance of Ephemeroptera, Plecoptera and Trichoptera and six were strongly related to the modified family biotic index (MFBI). Few functional feeding groups and habit groups were significantly related to deposited sediment, and this may be related to the focus on riffle, rather than reach-wide macroinvertebrates, as reach-wide sediment metrics were more closely related to human land use. Our results suggest that the coarse-level deposited sediment metric, visual estimate of fines, and the coarse-level biological index, MFBI, may be useful in biomonitoring efforts aimed at determining the impact of anthropogenic sedimentation on stream biotic integrity.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22525990','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22525990"><span>Evaluation of deposited sediment and macroinvertebrate metrics used to quantify biological response to excessive sedimentation in agricultural streams.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sutherland, Andrew B; Culp, Joseph M; Benoy, Glenn A</p> <p>2012-07-01</p> <p>The objective of this study was to evaluate which macroinvertebrate and deposited sediment metrics are best for determining effects of excessive sedimentation on stream integrity. Fifteen instream sediment metrics, with the strongest relationship to land cover, were compared to riffle macroinvertebrate metrics in streams ranging across a gradient of land disturbance. Six deposited sediment metrics were strongly related to the relative abundance of Ephemeroptera, Plecoptera and Trichoptera and six were strongly related to the modified family biotic index (MFBI). Few functional feeding groups and habit groups were significantly related to deposited sediment, and this may be related to the focus on riffle, rather than reach-wide macroinvertebrates, as reach-wide sediment metrics were more closely related to human land use. Our results suggest that the coarse-level deposited sediment metric, visual estimate of fines, and the coarse-level biological index, MFBI, may be useful in biomonitoring efforts aimed at determining the impact of anthropogenic sedimentation on stream biotic integrity.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18793205','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18793205"><span>Development of an electronic seepage chamber for extended use in a river.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Fritz, Brad G; Mendoza, Donaldo P; Gilmore, Tyler J</p> <p>2009-01-01</p> <p>Seepage chambers have been used to characterize the flux of water across the water-sediment interface in a variety of settings. In this work, an electronic seepage chamber was developed specifically for long-term use in a large river where hydraulic gradient reversals occur frequently with river-stage variations. A bidirectional electronic flowmeter coupled with a seepage chamber was used to measure temporal changes in the magnitude and direction of water flux across the water-sediment interface over an 8-week period. The specific discharge measured from the seepage chamber compared favorably with measurements of vertical hydraulic gradient and previous specific discharge calculations. This, as well as other supporting data, demonstrates the effectiveness of the electronic seepage chamber to accurately quantify water flux in two directions over a multimonth period in this setting. The ability to conduct multimonth measurements of water flux at a subhourly frequency in a river system is a critical capability for a seepage chamber in a system where hydraulic gradients change on a daily and seasonal basis.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li class="active"><span>12</span></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_12 --> <div id="page_13" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li class="active"><span>13</span></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="241"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/43686','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/43686"><span>Hydrologic influence on sediment transport of low-gradient, forested headwater streams in central Louisiana</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Philip Saksa; Yi Jun Xu; Richard Stich</p> <p>2013-01-01</p> <p>Extensive research has been conducted on headwater streams in regions with high topographic variation. However, relatively few studies have examined low-gradient headwater stream systems, such as those existing in much of the southeastern Coastal Plain. The focus of this study is to investigate spatial and temporal variation of headwater stream hydrology in a low-...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018JESS..127...11D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018JESS..127...11D"><span>Rainfall characteristics and thresholds for periglacial debris flows in the Parlung Zangbo Basin, southeast Tibetan Plateau</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Deng, Mingfeng; Chen, Ningsheng; Ding, Haitao</p> <p>2018-02-01</p> <p>The Parlung Zangbo Basin in the southeastern Tibet Plateau is affected by the summer monsoon from the Indian Ocean, which produces large rainfall gradients in the basin. Rainfall data during 2012-2015 from five new meteorological stations are used to analyse the rainfall characteristics. The daily rainfall, rainfall duration, mean rainfall intensity, and peak rainfall intensity are consistent, but sometimes contrasting. For example, these values decrease with increasing altitude, and the gradient is large downstream and small upstream, respectively. Moreover, the rainfall intensity peaks between 01:00 and 06:00 and increases during the afternoon. Based on the analysis of 14 debris flow cases in the basin, differences in the rainfall threshold differ depending on the location as sediment varieties. The sediment in the middle portions of the basin is wet and well structured; thus, long-duration, high-intensity rainfall is required to generate debris flows. Ravels in the upstream area are arid and not well structured, and short-duration rainfall is required to trigger debris flows. Between the above two locations, either long-duration, low-intensity rainfall or short-duration, high-intensity rainfall could provoke debris flows. Clearly, differences in rainfall characteristics and rainfall thresholds that are associated with the location must be considered in debris flow monitoring and warnings.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4495191','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4495191"><span>Diversity of the Sediment Microbial Community in the Aha Watershed (Southwest China) in Response to Acid Mine Drainage Pollution Gradients</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Sun, Weimin; Sun, Min; Dong, Yiran; Ning, Zengping; Xiao, Enzong; Tang, Song; Li, Jiwei</p> <p>2015-01-01</p> <p>Located in southwest China, the Aha watershed is continually contaminated by acid mine drainage (AMD) produced from upstream abandoned coal mines. The watershed is fed by creeks with elevated concentrations of aqueous Fe (total Fe > 1 g/liter) and SO42− (>6 g/liter). AMD contamination gradually decreases throughout downstream rivers and reservoirs, creating an AMD pollution gradient which has led to a suite of biogeochemical processes along the watershed. In this study, sediment samples were collected along the AMD pollution sites for geochemical and microbial community analyses. High-throughput sequencing found various bacteria associated with microbial Fe and S cycling within the watershed and AMD-impacted creek. A large proportion of Fe- and S-metabolizing bacteria were detected in this watershed. The dominant Fe- and S-metabolizing bacteria were identified as microorganisms belonging to the genera Metallibacterium, Aciditerrimonas, Halomonas, Shewanella, Ferrovum, Alicyclobacillus, and Syntrophobacter. Among them, Halomonas, Aciditerrimonas, Metallibacterium, and Shewanella have previously only rarely been detected in AMD-contaminated environments. In addition, the microbial community structures changed along the watershed with different magnitudes of AMD pollution. Moreover, the canonical correspondence analysis suggested that temperature, pH, total Fe, sulfate, and redox potentials (Eh) were significant factors that structured the microbial community compositions along the Aha watershed. PMID:25979900</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014Geomo.205...51L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014Geomo.205...51L"><span>Beaver dams and channel sediment dynamics on Odell Creek, Centennial Valley, Montana, USA</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Levine, Rebekah; Meyer, Grant A.</p> <p>2014-01-01</p> <p>Beaver dams in streams are generally considered to increase bed elevation through in-channel sediment storage, thus, reintroductions of beaver are increasingly employed as a restoration tool to repair incised stream channels. Here we consider hydrologic and geomorphic characteristics of the study stream in relation to in-channel sediment storage promoted by beaver dams. We also document the persistence of sediment in the channel following breaching of dams. Nine reaches, containing 46 cross-sections, were investigated on Odell Creek at Red Rock Lakes National Wildlife Refuge, Centennial Valley, Montana. Odell Creek has a snowmelt-dominated hydrograph and peak flows between 2 and 10 m3 s- 1. Odell Creek flows down a fluvial fan with a decreasing gradient (0.018-0.004), but is confined between terraces along most of its length, and displays a mostly single-thread, variably sinuous channel. The study reaches represent the overall downstream decrease in gradient and sediment size, and include three stages of beaver damming: (1) active; (2) built and breached in the last decade; and (3) undammed. In-channel sediment characteristics and storage were investigated using pebble counts, fine-sediment depth measurements, sediment mapping and surveys of dam breaches. Upstream of dams, deposition of fine (≤ 2 mm) sediment is promoted by reduced water surface slope, shear stress and velocity, with volumes ranging from 48 to 182 m3. High flows, however, can readily transport suspended sediment over active dams. Variations in bed-sediment texture and channel morphology associated with active dams create substantial discontinuities in downstream trends and add to overall channel heterogeneity. Observations of abandoned dam sites and dam breaches revealed that most sediment stored above beaver dams is quickly evacuated following a breach. Nonetheless, dam remnants trap some sediment, promote meandering and facilitate floodplain development. Persistence of beaver dam sediment within the main channel on Odell Creek is limited by frequent breaching (< 1-5 years), so in-channel sediment storage because of damming has not caused measurable channel aggradation over the study period. Enhanced overbank flow by dams, however, likely increases fine-grained floodplain sedimentation and riparian habitat. Contrasts between beaver-damming impacts on Odell Creek and other stream systems of different scales suggest a high sensitivity to hydrologic, geomorphic, and environmental controls, complicating predictions of the longer-term effects of beaver restoration.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27312332','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27312332"><span>Influence of sediment resuspension on the efficacy of geoengineering materials in the control of internal phosphorous loading from shallow eutrophic lakes.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yin, Hongbin; Kong, Ming; Han, Meixiang; Fan, Chengxin</p> <p>2016-12-01</p> <p>Modified clay-based solid-phase phosphorous (P) sorbents are increasingly used as lake geoengineering materials for lake eutrophication control. However, some still dispute the feasibility of using these materials to control internal P loading from shallow eutrophic lakes. The lack of information about P behavior while undergoing frequent sediment resuspension greatly inhibits the modified minerals' use. In this study, a sediment resuspension generating system was used to simulate the effect of both moderate winds (5.1 m/s) and strong winds (8.7 m/s) on the stability of sediment treated by two geoengineering materials, Phoslock ® (a lanthanum modified bentonite) and thermally-treated calcium-rich attapulgite. This study also presents an analysis of the P dynamics across the sediment-water interface of two shallow eutrophic lakes. In addition, the effect of wind velocity on P forms and P supply from the treated sediment were studied using chemical extraction and diffusive gradients in thin films (DGT) technique, respectively. Results showed that adding geoengineering materials can enhance the stability of surface sediment and reduce the erosion depth caused by wind accordingly. All treatments can effectively reduce soluble reactive phosphorus (SRP) concentration in overlying water when sediment is capped with thermally-treated calcium-rich attapulgite, which performs better than sediment mixed with modified attapulgite but not as well as sediment treated with Phoslock ® . However, their efficiency decreased with the increase in occurrences of sediment resuspension. The addition of the selected geoengineering materials effectively reduced the P fluxes across sediment-water interface and lowered P supply ability from the treated sediment during sediment resuspension. The reduction of mobile P and enhancement of calcium bound P and residual P fraction in the treated sediment was beneficial to the long-term lake internal P loading management. All of the results indicated that the studied geoengineering materials are suitable for application in shallow eutrophic lakes with frequent sediment resuspension activity. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009JGRC..114.3008C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009JGRC..114.3008C"><span>Turbidity current with a roof: Direct numerical simulation of self-stratified turbulent channel flow driven by suspended sediment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cantero, Mariano I.; Balachandar, S.; Cantelli, Alessandro; Pirmez, Carlos; Parker, Gary</p> <p>2009-03-01</p> <p>In this work we present direct numerical simulations (DNS) of sediment-laden channel flows. In contrast to previous studies, where the flow has been driven by a constant, uniform pressure gradient, our flows are driven by the excess density imposed by suspended sediment. This configuration provides a simplified model of a turbidity current and is thus called the turbidity current with a roof configuration. Our calculations elucidate with DNS for the first time several fascinating features of sediment-laden flows, which may be summarized as follows. First, the presence of sediment breaks the symmetry of the flow because of a tendency to self-stratify. More specifically, this self-stratification is manifested in terms of a Reynolds-averaged suspended sediment concentration that declines in the upward normal direction and a Reynolds-averaged velocity profile with a maximum that is below the channel centerline. Second, this self-stratification damps the turbulence, particularly near the bottom wall. Two regimes are observed, one in which the flow remains turbulent but the level of turbulence is reduced and another in which the flow relaminarizes in a region near the bottom wall, i.e., bed. Third, the analysis allows the determination of a criterion for the break between these two regimes in terms of an appropriately defined dimensionless settling velocity. The results provide guidance for the improvement of Reynolds-averaged closures for turbulent flow in regard to stratification effects. Although the analysis reported here is not performed at the scale of large oceanic turbidity currents, which have sufficiently large Reynolds numbers to be inaccessible via DNS at this time, the implication of flow relaminarization is of considerable importance. Even a swift oceanic turbidity current which at some point crosses the threshold into the regime of relaminarization may lose the capacity to reentrain sediment that settles on the bed and thus may quickly die as it loses its driving force.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29870948','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29870948"><span>Trends in historical mercury deposition inferred from lake sediment cores across a climate gradient in the Canadian High Arctic.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Korosi, Jennifer B; Griffiths, Katherine; Smol, John P; Blais, Jules M</p> <p>2018-06-02</p> <p>Recent climate change may be enhancing mercury fluxes to Arctic lake sediments, confounding the use of sediment cores to reconstruct histories of atmospheric deposition. Assessing the independent effects of climate warming on mercury sequestration is challenging due to temporal overlap between warming temperatures and increased long-range transport of atmospheric mercury following the Industrial Revolution. We address this challenge by examining mercury trends in short cores (the last several hundred years) from eight lakes centered on Cape Herschel (Canadian High Arctic) that span a gradient in microclimates, including two lakes that have not yet been significantly altered by climate warming due to continued ice cover. Previous research on subfossil diatoms and inferred primary production indicated the timing of limnological responses to climate warming, which, due to prevailing ice cover conditions, varied from ∼1850 to ∼1990 for lakes that have undergone changes. We show that climate warming may have enhanced mercury deposition to lake sediments in one lake (Moraine Pond), while another (West Lake) showed a strong signal of post-industrial mercury enrichment without any corresponding limnological changes associated with warming. Our results provide insights into the role of climate warming and organic carbon cycling as drivers of mercury deposition to Arctic lake sediments. Copyright © 2018 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26599000','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26599000"><span>Microbial Response to Experimentally Controlled Redox Transitions at the Sediment Water Interface.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Frindte, Katharina; Allgaier, Martin; Grossart, Hans-Peter; Eckert, Werner</p> <p>2015-01-01</p> <p>The sediment-water interface of freshwater lakes is characterized by sharp chemical gradients, shaped by the interplay between physical, chemical and microbial processes. As dissolved oxygen is depleted in the uppermost sediment, the availability of alternative electron acceptors, e.g. nitrate and sulfate, becomes the limiting factor. We performed a time series experiment in a mesocosm to simulate the transition from aerobic to anaerobic conditions at the sediment-water interface. Our goal was to identify changes in the microbial activity due to redox transitions induced by successive depletion of available electron acceptors. Monitoring critical hydrochemical parameters in the overlying water in conjunction with a new sampling strategy for sediment bacteria enabled us to correlate redox changes in the water to shifts in the active microbial community and the expression of functional genes representing specific redox-dependent microbial processes. Our results show that during several transitions from oxic-heterotrophic condition to sulfate-reducing condition, nitrate-availability and the on-set of sulfate reduction strongly affected the corresponding functional gene expression. There was evidence of anaerobic methane oxidation with NOx. DGGE analysis revealed redox-related changes in microbial activity and expression of functional genes involved in sulfate and nitrite reduction, whereas methanogenesis and methanotrophy showed only minor changes during redox transitions. The combination of high-frequency chemical measurements and molecular methods provide new insights into the temporal dynamics of the interplay between microbial activity and specific redox transitions at the sediment-water interface.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013AGUFM.B41C0420M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013AGUFM.B41C0420M"><span>Insights into microbial communities involved in mercury methylation in the San Francisco Bay estuary</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Machak, C.; Francis, C. A.</p> <p>2013-12-01</p> <p>San Francisco Bay (SFB) estuary is the largest estuary on the western coast of the United States, draining a watershed covering more than one third of the state of California. Mercury (Hg) contamination in SFB, as a result of gold and mercury mining in the Coast Range and Sierra Nevada region, has been observed for at least 150 years. Additional sources of Hg contamination to SFB come from active oil refineries, manufacturing, and wastewater treatment plants in the area. Concentrations of methylmercury in the sediment at the time of sample collection for the present study ranged from 0.011-3.88 μg/kg (dry weight). At some sites, the concentration exceeds wetland toxicity limits, posing a threat to the health of the ecosystem and potentially endangering humans that use the estuary for food and recreation. This study attempts to understand the factors that control the transformation of Hg to methylmercury by microorganisms in aquatic sediments, where the majority of Hg methylation is known to occur. Under anoxic conditions, some sulfate- and iron-reducing bacteria have the capacity to transform Hg into methylmercury. To better understand the microbial communities involved in Hg methylation, an extensive library of 16S rRNA sequences was generated (via Illumina sequencing) from sediment samples at 20 sites throughout the SFB estuary. In addition to genomic data, we have access to a massive database of geochemical measurements made by the SFB Regional Monitoring Program at the sampling locations. These measurements show that our sediment samples have varying methylmercury concentrations and span gradients in porewater sulfate and Fe(III), which are the two known alternative electron acceptors for mercury-methylating anaerobic bacteria. The sampling sites also span gradients in other geochemical factors known to influence microbial community composition (and potentially Hg mercury methylation), such as available organic carbon, pH, and salinity. We will present the results of our analysis of the effect of various physical and geochemical parameters on the microbial community composition and abundance of known Hg methylators throughout SFB sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA346075','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA346075"><span>Analysis of Acoustic Plane-Wave Variability in the Region of the Mid-Atlantic Bight Shelf Break</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>1997-12-01</p> <p>V. Sanders, Second Reader 7^ r/U A4 J/,4^// William B. Maier JJ Chairman Department of Physics in IV ABSTRACT From the summer cruise of the Mid...at the top of the sediment of -1600 m/s with a significant gradient of -20 m/s/m ( Apel et al. , 1997). The highest correlation levels are found in...bottom attenuation. 41 42 LIST OF REFERENCES Apel , J. R., M. Badiey, C.-S. Chiu, S. Finette, R. Headrick, J. Kemp, J. F. Lynch, A. Newhall, M. H</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA212709','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA212709"><span>Environmental Impact Research Program: Reservoir Bank Erosion and Cultural Resources: Experiments in Mapping and Predicting the Erosion of Archeological Sediments at Reservoirs Along the Middle Missouri River with Sequential Historical Aerial Photographs</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>1989-08-01</p> <p>points on both the photos and base map. Transects placed at 100-m intervals along the waterline, oriented perpendicular to the gradient or slope just...the identifica- tion of major factors influencing bank erosion, independent variables measured included gradient of the land at the intersection of...have a very steep gradient , approaching vertical in some cases, broken only by intermittent minor drainages which have dissected terrace margins. b</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012IJEaS.101..307G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012IJEaS.101..307G"><span>Morphologic evolution of the Central Andes of Peru</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Gonzalez, Laura; Pfiffner, O. Adrian</p> <p>2012-01-01</p> <p>In this paper, we analyze the morphology of the Andes of Peru and its evolution based on the geometry of river channels, their bedrock profiles, stream gradient indices and the relation between thrust faults and morphology. The rivers of the Pacific Basin incised Mesozoic sediments of the Marañon thrust belt, Cenozoic volcanics and the granitic rocks of the Coastal Batholith. They are mainly bedrock channels with convex upward shapes and show signs of active ongoing incision. The changes in lithology do not correlate with breaks in slope of the channels (or knick points) such that the high gradient indices (K) with values between 2,000-3,000 and higher than 3,000 suggest that incision is controlled by tectonic activity. Our analysis reveals that many of the ranges of the Western Cordillera were uplifted to the actual elevations where peaks reach to 6,000 m above sea level by thrusting along steeply dipping faults. We correlate this uplift with the Quechua Phase of Neogene age documented for the Subandean thrust belt. The rivers of the Amazonas Basin have steep slopes and high gradient indices of 2,000-3,000 and locally more than 3,000 in those segments where the rivers flow over the crystalline basement of the Eastern Cordillera affected by vertical faulting. Gradient indices decrease to 1,000-2,000 within the east-vergent thrust belt of the Subandean Zone. Here a correlation between breaks in river channel slopes and location of thrust faults can be established, suggesting that the young, Quechua Phase thrust faults of the Subandean thrust belt, which involve Neogene sediments, influenced the channel geometry. In the eastern lowlands, these rivers become meandering and flow parallel to anticlines that formed in the hanging wall of Quechua Phase thrust faults, suggesting that the river courses were actively displaced outward into the foreland.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/935349','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/935349"><span>Active bacterial community structure along vertical redox gradients in Baltic Sea sediment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Jansson, Janet; Edlund, Anna; Hardeman, Fredrik</p> <p></p> <p>Community structures of active bacterial populations were investigated along a vertical redox profile in coastal Baltic Sea sediments by terminal-restriction fragment length polymorphism (T-RFLP) and clone library analysis. According to correspondence analysis of T-RFLP results and sequencing of cloned 16S rRNA genes, the microbial community structures at three redox depths (179 mV, -64 mV and -337 mV) differed significantly. The bacterial communities in the community DNA differed from those in bromodeoxyuridine (BrdU)-labeled DNA, indicating that the growing members of the community that incorporated BrdU were not necessarily the most dominant members. The structures of the actively growing bacterial communities weremore » most strongly correlated to organic carbon followed by total nitrogen and redox potentials. Bacterial identification by sequencing of 16S rRNA genes from clones of BrdU-labeled DNA and DNA from reverse transcription PCR (rt-PCR) showed that bacterial taxa involved in nitrogen and sulfur cycling were metabolically active along the redox profiles. Several sequences had low similarities to previously detected sequences indicating that novel lineages of bacteria are present in Baltic Sea sediments. Also, a high number of different 16S rRNA gene sequences representing different phyla were detected at all sampling depths.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27302374','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27302374"><span>Invertebrates in stormwater wet detention ponds - Sediment accumulation and bioaccumulation of heavy metals have no effect on biodiversity and community structure.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Stephansen, Diana Agnete; Nielsen, Asbjørn Haaning; Hvitved-Jacobsen, Thorkild; Pedersen, Morten Lauge; Vollertsen, Jes</p> <p>2016-10-01</p> <p>The invertebrate diversity in nine stormwater wet detention ponds (SWDP) was compared with the diversity in eleven small shallow lakes in the western part of Denmark. The SWDPs and lakes were chosen to reflect as large a gradient of pollutant loads and urbanization as possible. The invertebrates as well as the bottom sediments of the ponds and shallow lakes were analyzed for copper, iron, zinc, cadmium, chromium, lead, aluminum, nickel, arsenic and the potentially limiting nutrient, phosphorus. The Principal Component Analysis showed that invertebrates in SWDPs and lakes differed with respect to bioaccumulation of these elements, as did the sediments, albeit to a lesser degree. However, the Detrended Correspondence Analysis and the TWINSPAN showed that the invertebrate populations of the ponds and lakes could not be distinguished, with the possible exception of highway ponds presenting a distinct sub-group of wet detention ponds. The SWDPs and shallow lakes studied seemed to constitute aquatic ecosystems of similar taxon richness and composition as did the 11 small and shallow lakes. This indicates that SWDPs, originally constructed for treatment and flood protection purposes, become aquatic environments which play a local role for biodiversity similar to that of natural small and shallow lakes. Copyright © 2016. Published by Elsevier B.V.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28599152','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28599152"><span>Investigation of heavy metals release from sediment with bioturbation/bioirrigation.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>He, Yi; Men, Bin; Yang, Xiaofang; Li, Yaxuan; Xu, Hui; Wang, Dongsheng</p> <p>2017-10-01</p> <p>Bioturbation/bioirrigation can affect the remobilization of metals from sediments. In this study, experiments were performed to examine the effect of bioturbation/bioirrigation by different organisms on cadmium (Cd), copper (Cu), zinc (Zn) and lead (Pb) releasing from the spiked sediment. The diffusive gradient in thin films technique (DGT) revealed that at the end of exposure time, the labile heavy metals concentrations in the pore water for all metal and organisms combinations except Cu and chironomid larvae were much lower than that in the control group. However, the concentrations of heavy metals detected by the DGT were virtually indistinguishable among the treatments with tubificid, chironomid larvae and loach. The correlation analysis of heavy metals with iron (Fe) and manganese (Mn) suggested that Cd, Zn and Pb were most likely bound as Fe-Mn oxidation form in the pore water, but Cu was in other forms. After 28 d of exposure, bioturbation/bioirrigation produced a significant release of particulate heavy metals into the overlying water, especially in the treatment with loach. The bioturbation/bioirrigation impact on the Pb remobilization was less than the other three heavy metals. The effects of bioturbaiton/bioirrigation on the heavy metals remobilization in the sediment were complex that with studying the heavy metals remobilization in the sediment and water interface, the biological indicators should be recommended. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP51C1664S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP51C1664S"><span>Experimental evidence of rainfall driven knickpoints</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Singh, A.; Tejedor, A.; Grimaud, J. L.; Foufoula-Georgiou, E.</p> <p>2017-12-01</p> <p>Formation of knickpoints is typically associated with a landscape's response to differential uplift causing a base-level fall that results in a steep region along a river's long profile. However, to the best of our knowledge, knickpoints have never been reported to form in landscapes subject to varying precipitation rate wherein uplift rate remains constant. Here we reveal evidence that knickpoints can indeed result from increasing precipitation rate, which reorganizes the production and delivery of sediment across a range of spatial and temporal scales, creating thus constraints and water-sediment flux disequilibria at local scales. We base our findings on analysis of high resolution topography data obtained from an experimental landscape conducted to study the effect of changing rainfall intensity on landscape evolution at short and long-time scales. Results from our study suggest that at the transient state of increasing precipitation, a scale-dependent behavior of erosion rates emerges that results in a regime shift in the transport processes in channels from supply-limited to sediment-flux dependent. This regime shift is caused by an increase in the sediment supply from the hillslopes, generating variability in water to sediment flux ratio (Qs/Qw) in channels of different sub-drainage basins which is further manifested in the longitudinal river profiles as abrupt changes in their gradients (knickpoints), advecting upstream on the river network as time proceeds.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013Geomo.185...67K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013Geomo.185...67K"><span>Differentiating the relative importance of land cover change and geomorphic processes on fine sediment sequestration in a logged watershed</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kasprak, Alan; Magilligan, Francis J.; Nislow, Keith H.; Renshaw, Carl E.; Snyder, Noah P.; Dade, W. Brian</p> <p>2013-03-01</p> <p>Timber harvest often results in accelerated soil erosion and subsequent elevated fine (< 2 mm) sediment delivery to channels causing deleterious effects to numerous aquatic species, particularly salmonid fishes. Here we determine, through sediment physical analyses (pebble counts, embeddedness surveys, and interstitial shelter space counts) and geochemical analyses (7Be and 210Pbex activities), the amount and timing of delivery of fine sediment currently found on streambeds of the Narraguagus River watershed in coastal Maine. The role of recent timber harvest, documented via aerial photo spatial analysis, on fine sediment delivery is contrasted with the ability of the glacially influenced topography and surficial geology to deliver fine sediment to streams and to influence channel substrate. Results show that of the land use and geomorphic variables examined, only 210Pbex activities were significantly correlated with the amount of upstream harvest (r2 = 0.49). Concurrently, we find that unit stream power (particularly the slope component) explains much of the variability in channel substrate and that slope and stream power are largely influenced by the legacy of Pleistocene glaciation on channel form. Results suggest a conceptual model whereby fine sediment delivery as a result of late twentieth century timber harvest is likely dampened because of the low gradient landscape of coastal Maine. While geochemical tracers indicate recent fine sediment delivery in harvested areas, channels are likely capable of quickly winnowing these fines from the channel bed. These results further suggest that under contemporary land use conditions, the geomorphic and geologic setting represents a first-order control on channel substrate and habitat suitability for salmonid fishes, including federally endangered Atlantic salmon (Salmo salar), in coastal drainages of northeastern Maine.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28407457','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28407457"><span>Dynamics of sediment carbon stocks across intertidal wetland habitats of Moreton Bay, Australia.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hayes, Matthew A; Jesse, Amber; Hawke, Bruce; Baldock, Jeff; Tabet, Basam; Lockington, David; Lovelock, Catherine E</p> <p>2017-10-01</p> <p>Coastal wetlands are known for high carbon storage within their sediments, but our understanding of the variation in carbon storage among intertidal habitats, particularly over geomorphological settings and along elevation gradients, is limited. Here, we collected 352 cores from 18 sites across Moreton Bay, Australia. We assessed variation in sediment organic carbon (OC) stocks among different geomorphological settings (wetlands within riverine settings along with those with reduced riverine influence located on tide-dominated sand islands), across elevation gradients, with distance from shore and among habitat and vegetation types. We used mid-infrared (MIR) spectroscopy combined with analytical data and partial least squares regression to quantify the carbon content of ~2500 sediment samples and provide fine-scale spatial coverage of sediment OC stocks to 150 cm depth. We found sites in river deltas had larger OC stocks (175-504 Mg/ha) than those in nonriverine settings (44-271 Mg/ha). Variation in OC stocks among nonriverine sites was high in comparison with riverine and mixed geomorphic settings, with sites closer to riverine outflow from the east and south of Moreton Bay having higher stocks than those located on the sand islands in the northwest of the bay. Sediment OC stocks increased with elevation within nonriverine settings, but not in riverine geomorphic settings. Sediment OC stocks did not differ between mangrove and saltmarsh habitats. OC stocks did, however, differ between dominant species across the research area and within geomorphic settings. At the landscape scale, the coastal wetlands of the South East Queensland catchments (17,792 ha) are comprised of approximately 4,100,000-5,200,000 Mg of sediment OC. Comparatively high variation in OC storage between riverine and nonriverine geomorphic settings indicates that the availability of mineral sediments and terrestrial derived OC may exert a strong influence over OC storage potential across intertidal wetland systems. © 2017 John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70022255','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70022255"><span>Chapter 4. Predicting post-fire erosion and sedimentation risk on a landscape scale</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>MacDonald, L.H.; Sampson, R.; Brady, D.; Juarros, L.; Martin, Deborah</p> <p>2000-01-01</p> <p>Historic fire suppression efforts have increased the likelihood of large wildfires in much of the western U.S. Post-fire soil erosion and sedimentation risks are important concerns to resource managers. In this paper we develop and apply procedures to predict post-fire erosion and sedimentation risks on a pixel-, catchment-, and landscape-scale in central and western Colorado.Our model for predicting post-fire surface erosion risk is conceptually similar to the Revised Universal Soil Loss Equation (RUSLE). One key addition is the incorporation of a hydrophobicity risk index (HY-RISK) based on vegetation type, predicted fire severity, and soil texture. Post-fire surface erosion risk was assessed for each 90-m pixel by combining HYRISK, slope, soil erodibility, and a factor representing the likely increase in soil wetness due to removal of the vegetation. Sedimentation risk was a simple function of stream gradient. Composite surface erosion and sedimentation risk indices were calculated and compared across the 72 catchments in the study area.When evaluated on a catchment scale, two-thirds of the catchments had relatively little post-fire erosion risk. Steeper catchments with higher fuel loadings typically had the highest post-fire surface erosion risk. These were generally located along the major north-south mountain chains and, to a lesser extent, in west-central Colorado. Sedimentation risks were usually highest in the eastern part of the study area where a higher proportion of streams had lower gradients. While data to validate the predicted erosion and sedimentation risks are lacking, the results appear reasonable and are consistent with our limited field observations. The models and analytic procedures can be readily adapted to other locations and should provide useful tools for planning and management at both the catchment and landscape scale.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25063666','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25063666"><span>Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331).</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yanagawa, Katsunori; Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken</p> <p>2014-10-01</p> <p>The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. Copyright © 2014, American Society for Microbiology. All Rights Reserved.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li class="active"><span>13</span></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_13 --> <div id="page_14" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li class="active"><span>14</span></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="261"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4064961','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4064961"><span>An Improved Experimental Method for Simulating Erosion Processes by Concentrated Channel Flow</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Chen, Xiao-Yan; Zhao, Yu; Mo, Bin; Mi, Hong-Xing</p> <p>2014-01-01</p> <p>Rill erosion is an important process that occurs on hill slopes, including sloped farmland. Laboratory simulations have been vital to understanding rill erosion. Previous experiments obtained sediment yields using rills of various lengths to get the sedimentation process, which disrupted the continuity of the rill erosion process and was time-consuming. In this study, an improved experimental method was used to measure the rill erosion processes by concentrated channel flow. By using this method, a laboratory platform, 12 m long and 3 m wide, was used to construct rills of 0.1 m wide and 12 m long for experiments under five slope gradients (5, 10, 15, 20, and 25 degrees) and three flow rates (2, 4, and 8 L min−1). Sediment laden water was simultaneously sampled along the rill at locations 0.5 m, 1 m, 2 m, 3 m, 4 m, 5 m, 6 m, 7 m, 8 m, 10 m, and 12 m from the water inlet to determine the sediment concentration distribution. The rill erosion process measured by the method used in this study and that by previous experimental methods are approximately the same. The experimental data indicated that sediment concentrations increase with slope gradient and flow rate, which highlights the hydraulic impact on rill erosion. Sediment concentration increased rapidly at the initial section of the rill, and the rate of increase in sediment concentration reduced with the rill length. Overall, both experimental methods are feasible and applicable. However, the method proposed in this study is more efficient and easier to operate. This improved method will be useful in related research. PMID:24949621</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70192473','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70192473"><span>Seismic imaging of the metamorphism of young sediment into new crystalline crust in the actively rifting Imperial Valley, California</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Han, Liang; Hole, John; Stock, Joann; Fuis, Gary S.; Williams, Colin F.; Delph, Jonathan; Davenport, Kathy; Livers, Amanda</p> <p>2016-01-01</p> <p>Plate-boundary rifting between transform faults is opening the Imperial Valley of southern California and the rift is rapidly filling with sediment from the Colorado River. Three 65–90 km long seismic refraction profiles across and along the valley, acquired as part of the 2011 Salton Seismic Imaging Project, were analyzed to constrain upper crustal structure and the transition from sediment to underlying crystalline rock. Both first arrival travel-time tomography and frequency-domain full-waveform inversion were applied to provide P-wave velocity models down to ∼7 km depth. The valley margins are fault-bounded, beyond which thinner sediment has been deposited on preexisting crystalline rocks. Within the central basin, seismic velocity increases continuously from ∼1.8 km/s sediment at the surface to >6 km/s crystalline rock with no sharp discontinuity. Borehole data show young sediment is progressively metamorphosed into crystalline rock. The seismic velocity gradient with depth decreases approximately at the 4 km/s contour, which coincides with changes in the porosity and density gradient in borehole core samples. This change occurs at ∼3 km depth in most of the valley, but at only ∼1.5 km depth in the Salton Sea geothermal field. We interpret progressive metamorphism caused by high heat flow to be creating new crystalline crust throughout the valley at a rate comparable to the ≥2 km/Myr sedimentation rate. The newly formed crystalline crust extends to at least 7–8 km depth, and it is shallower and faster where heat flow is higher. Most of the active seismicity occurs within this new crust.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005AGUFMOS42A..07C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005AGUFMOS42A..07C"><span>Cohesive Strength of Gas-hydrate-bearing Marine Sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cook, A. E.; Goldberg, D.</p> <p>2005-12-01</p> <p>We examine the relationship between gas hydrate saturation and the cohesive strength of marine sediments in a variety of continental margin settings. The cohesive strength (cohesion) is a fundamental physical property controlling sediment resistance to compressive failure. The cohesion (Co), is typically defined by the uncompressive rock strength and the friction angle, but it can also be related to the dynamic Young's modulus (ED), where: Co = 1.5*10-3 ED. The dynamic Young's modulus is computed using in situ Vp, Vs, and bulk density borehole logs. The Co profiles are compared to estimates of the in situ hydrate saturation, Sh, calculated using electrical resistivity logs and the modified Archie formula: Sh = 1 - (aRw/RΦm)1/n. We will present results of these comparisons from data collected during Ocean Drilling Program Legs at Cascadia margin (204 & 168) and Blake Ridge (164), the JIP gas hydrate drilling project in the Gulf of Mexico, and Malik permafrost wells. In general, at all the sites investigated, Co steadily increases downhole as sediments compact due to overburden. In marine sediments, cohesion ranges from 500-2000kPa above the BSR, with a baseline gradient usually between 5 and 10 kPa/m. Preliminary results show at Cascadia margin that sediments with Sh > 15%, Co increases dramatically, at least 200kPa greater than the general trend of the downhole gradient. This suggests that Co is affected directly by Sh, and may be related to the rate of change in Sh (e.g. gradual or sharp) as a function of depth. Further study on the relationship between Co and Sh may provide information on the growth habit of gas hydrates in sediment pore spaces.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4178666','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4178666"><span>Microbial Community Stratification Controlled by the Subseafloor Fluid Flow and Geothermal Gradient at the Iheya North Hydrothermal Field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken</p> <p>2014-01-01</p> <p>The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. PMID:25063666</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016GGG....17.4566H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016GGG....17.4566H"><span>Seismic imaging of the metamorphism of young sediment into new crystalline crust in the actively rifting Imperial Valley, California</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Han, Liang; Hole, John A.; Stock, Joann M.; Fuis, Gary S.; Williams, Colin F.; Delph, Jonathan R.; Davenport, Kathy K.; Livers, Amanda J.</p> <p>2016-11-01</p> <p>Plate-boundary rifting between transform faults is opening the Imperial Valley of southern California and the rift is rapidly filling with sediment from the Colorado River. Three 65-90 km long seismic refraction profiles across and along the valley, acquired as part of the 2011 Salton Seismic Imaging Project, were analyzed to constrain upper crustal structure and the transition from sediment to underlying crystalline rock. Both first arrival travel-time tomography and frequency-domain full-waveform inversion were applied to provide P-wave velocity models down to ˜7 km depth. The valley margins are fault-bounded, beyond which thinner sediment has been deposited on preexisting crystalline rocks. Within the central basin, seismic velocity increases continuously from ˜1.8 km/s sediment at the surface to >6 km/s crystalline rock with no sharp discontinuity. Borehole data show young sediment is progressively metamorphosed into crystalline rock. The seismic velocity gradient with depth decreases approximately at the 4 km/s contour, which coincides with changes in the porosity and density gradient in borehole core samples. This change occurs at ˜3 km depth in most of the valley, but at only ˜1.5 km depth in the Salton Sea geothermal field. We interpret progressive metamorphism caused by high heat flow to be creating new crystalline crust throughout the valley at a rate comparable to the ≥2 km/Myr sedimentation rate. The newly formed crystalline crust extends to at least 7-8 km depth, and it is shallower and faster where heat flow is higher. Most of the active seismicity occurs within this new crust.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014EGUGA..16.7521J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014EGUGA..16.7521J"><span>Quantification of MTE in surface sediments of Morbihan Coast (South Brittany, France): A preliminary approach for determination of sources and dynamics</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Jimenez, Joselyn; Goubert, Evelyne; Labeyrie, Laurent; Coynel, Alexandra; Menier, David</p> <p>2014-05-01</p> <p>The Morbihan Coast (South Brittany, France) has an intense coastal activity: farming, industry, urban habitation run-off, yachting and transportation. In the past centuries, tin mining industry was also developed. These different factors may introduce metal trace elements (MTE) into the marine environment at toxic concentration levels. This pollution can particularly affect the oyster production, widely developed in the area. Monitoring MTE in surface sediments at high spatial resolution has been programmed to assess pollutants and their sources in two of the major Morbihan coastal systems concerned with oyster farming, and where available information on MTE impact and sediment quality is limited: the Bay of Quiberon, partly protected from the open ocean by the Quiberon Peninsula and several islands, mostly sandy (coarse to fine, with a significant shelly fraction), with water depths shallower that 25 m, and the Gulf of Morbihan, a shallow depth (less than 5 m, apart from the two paleoriver beds), semi-enclosed, estuarine system with very coarse sand to fine mud, mostly distributed by a strong tidal current system. Fifty two surface sediment samples were collected in April 2013 to characterize the MTE spatial distribution through the salinity and pollution gradients, from the small local rivers and harbor areas to the open marine environments. Analyses cover sedimentological and biogeochemical properties (particulate organic carbon using a LECO-CS-230; MTE using ICP-MS or DMA for Hg). Statistical analyses help to discriminate within the spatial variability the natural (e.g. grain-size effect) and anthropogenic factors. MTE concentrations were also compared to local geochemical background as measured at the bottom of three sediment cores collected in representative sites, for calculating the enrichment index of each MTE and evaluating the degree of sediment contamination. The initial interpretation of the results would indicate a clear distinction between the geochemical gradients linked to natural processes: sediment sources and size fractionation (for example, the relationship between Sr and carbonate concentration in the sand fraction), and gradients linked to polluting factors, in particular in the harbors and protected arias, probably associated with boat maintenance (with Cu, Zn and Sn concentrations exceeding 100 ppm, up to 300 ppm in isolated places). More detailed statistical analyses and implications will be presented at the conference.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017PalOc..32..903T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017PalOc..32..903T"><span>Tropical Pacific climate variability over the last 6000 years as recorded in Bainbridge Crater Lake, Galápagos</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Thompson, Diane M.; Conroy, Jessica L.; Collins, Aaron; Hlohowskyj, Stephan R.; Overpeck, Jonathan T.; Riedinger-Whitmore, Melanie; Cole, Julia E.; Bush, Mark B.; Whitney, H.; Corley, Timothy L.; Kannan, Miriam Steinitz</p> <p>2017-08-01</p> <p>Finely laminated sediments within Bainbridge Crater Lake, Galápagos, provide a record of El Niño-Southern Oscillation (ENSO) events over the Holocene. Despite the importance of this sediment record, hypotheses for how climate variability is preserved in the lake sediments have not been tested. Here we present results of long-term monitoring of the local climate and limnology and a revised interpretation of the sediment record. Brown-green, organic-rich, siliciclastic laminae reflect warm, wet conditions typical of El Niño events, whereas carbonate and gypsum precipitate during cool, dry La Niña events and persistent dry periods, respectively. Applying this new interpretation, we find that ENSO events of both phases were generally less frequent during the mid-Holocene ( 6100-4000 calendar years B.P.) relative to the last 1500 calendar years. Abundant carbonate laminations between 3500 and 3000 calendar years B.P. imply that conditions in the Galápagos region were cool and dry during this period when the tropical Pacific E-W sea surface temperature (SST) gradient likely strengthened. The frequency of El Niño and La Niña events then intensified dramatically around 1750-2000 calendar years B.P., consistent with a weaker SST gradient and an increased frequency of ENSO events in other regional records. This strong interannual variability persisted until 700 calendar years B.P., when ENSO-related variability at the lake decreased as the SST gradient strengthened. Persistent, dry conditions then dominated between 300 and 50 calendar years B.P. (A.D. 1650-1900, ± 100 years), whereas wetter conditions and frequent El Niño events dominated in the most recent century.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005WRR....41.7004P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005WRR....41.7004P"><span>Tracking painted pebbles: Short-term rates of sediment movement on four Mojave Desert piedmont surfaces</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Persico, Lyman P.; Nichols, Kyle K.; Bierman, Paul R.</p> <p>2005-07-01</p> <p>To quantify short-term sediment movement rates across Mojave Desert piedmonts, 1600 painted and numbered pebbles were laid out in paired, orthogonal, 20 m lines at 4 sites and resurveyed five times over 2 years and revisited 2 years later. Pebble lines cross shallow (5-15 cm), ephemeral channels and adjacent unconsolidated interfluves, the latter being the dominant landform at all sites. Two sites are located on surfaces that have been or are impacted by military training activities, including the use of tracked vehicles. The two other sites have not been disturbed by human impact. Three different processes transport pebbles. Episodic streamflow in ephemeral channels transports a few pebbles long distances (decimeters to meters) down gradient. Bioturbation moves many pebbles small distances (centimeters) in any direction, and vehicular disturbance transports pebbles varying distances (centimeters to meters) in any direction. Significant down-gradient sediment movement occurred dominantly in channels where flowing water was concentrated. Interfluves were stable surfaces where little transport occurred. Off-road vehicle use is coincident with accelerated pebble movement. Pebbles moved further and faster down gradient at the disturbed Iron Mountain and East Range Road sites (mean speeds of 0.18 and 0.34 m yr-1, respectively) than at the undisturbed Chemehuevi and Goldstone sites, (mean speeds of 0.17 and 0.02 m yr-1, respectively). Mean pebble movement is highly and negatively correlated with vegetation density. Short-term pebble movement rates are several times lower than long-term (103 to 104 year) rates, suggesting the importance of rare, extreme precipitation events for sediment transport such as those of fall and winter 2004.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28970741','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28970741"><span>Methylmercury bioaccumulation in an urban estuary: Delaware River USA.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Buckman, Kate; Taylor, Vivien; Broadley, Hannah; Hocking, Daniel; Balcom, Prentiss; Mason, Rob; Nislow, Keith; Chen, Celia</p> <p>2017-09-01</p> <p>Spatial variation in mercury (Hg) and methylmercury (MeHg) bioaccumulation in urban coastal watersheds reflects complex interactions between Hg sources, land use, and environmental gradients. We examined MeHg concentrations in fauna from the Delaware River estuary, and related these measurements to environmental parameters and human impacts on the waterway. The sampling sites followed a north to south gradient of increasing salinity, decreasing urban influence, and increasing marsh cover. Although mean total Hg in surface sediments (top 4cm) peaked in the urban estuarine turbidity maximum and generally decreased downstream, surface sediment MeHg concentrations showed no spatial patterns consistent with the examined environmental gradients, indicating urban influence on Hg loading to the sediment but not subsequent methylation. Surface water particulate MeHg concentration showed a positive correlation with marsh cover whereas dissolved MeHg concentrations were slightly elevated in the estuarine turbidity maximum region. Spatial patterns of MeHg bioaccumulation in resident fauna varied across taxa. Small fish showed increased MeHg concentrations in the more urban/industrial sites upstream, with concentrations generally decreasing farther downstream. Invertebrates either showed no clear spatial patterns in MeHg concentrations (blue crabs, fiddler crabs) or increasing concentrations further downstream (grass shrimp). Best-supported linear mixed models relating tissue concentration to environmental variables reflected these complex patterns, with species specific model results dominated by random site effects with a combination of particulate MeHg and landscape variables influencing bioaccumulation in some species. The data strengthen accumulating evidence that bioaccumulation in estuaries can be decoupled from sediment MeHg concentration, and that drivers of MeHg production and fate may vary within a small region.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMPP51A1051B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMPP51A1051B"><span>Climatic teleconnections between the subtropical and polar North Atlantic during the Last Interglacial period (MIS5e)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bauch, H. A.; Zhuravleva, A.</p> <p>2017-12-01</p> <p>Meridional gradients in sea surface temperature (SST) control ocean-atmosphere circulation patterns and, thus, regulate the global climate. Here we reconstruct variability of these gradients in the course of the Last Interglacial (MIS5e), by using sediment records from the low and high latitude North Atlantic which are linked via the Gulf Stream.In the Nordic Seas, i.e., at the northern end of the Gulf Stream extension, strong post-Saalian meltwater discharge reduced northward-directed transport of surface oceanic heat until the mid-MIS5e, resulting in a late and rather weak SST peak. To decipher the corresponding climatic changes in the area of the Gulf Stream origin, we employ stable isotopes data, planktic foraminifera assemblages as well as a new alkenone paleotemperature record from core drilled on the upper northern slope of the Little Bahama Bank. In addition, chemical composition of sediments (XRF data) was used to asses past sea level fluctuations and sedimentation regimes on this shallow-water carbonate bank. Significant variations in Sr/Ca ratios point to a two-fold structure of the Last Interglacial. Stabilized Sr/Ca values were reached only during the second phase of MIS5e, possibly representing the interval of maximum bank-top flooding after the northern hemisphere deglaciation terminated. Faunal-based proxies as well as oxygen isotopic gradients between surface and bottom-dwelling foraminifera corroborate existence of the two major climatic phases within the Last Interglacial, in agreement with the respective development in the polar region. This further suggests a strong climatic coupling between the subtropical and high-latitude North Atlantic with important implications for meridional SST gradients during the Last Interglacial.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22154008','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22154008"><span>Microbial diversity and composition of the sediment in the drinking water reservoir Saidenbach (Saxonia, Germany).</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Röske, Kerstin; Sachse, René; Scheerer, Carola; Röske, Isolde</p> <p>2012-02-01</p> <p>Sediments contain a huge number and diversity of microorganisms that are important for the flux of material and are pivotal to all major biogeochemical cycles. Sediments of reservoirs are affected by a wide spectrum of allochthous and autochthonous influences providing versatile environments along the flow of water within the reservoir. Here we report on the microbial diversity in sediments of the mesotrophic drinking water reservoir Saidenbach, Germany, featuring a pronounced longitudinal gradient in sediment composition in the reservoir system. Three sampling sites were selected along the gradient, and the microbial communities in two sediment depths were characterized using catalysed reporter deposition fluorescence in situ hybridization (CARD-FISH) and a bar-coded pyrosequencing approach. Multivariate statistic was used to reveal relationships between sequence diversity and the environmental conditions. The microbial communities were tremendously diverse with a Shannon index of diversity (H') ranging from 6.7 to 7.1. 18,986 sequences could be classified into 37 phyla including candidate divisions, but the full extent of genetic diversity was not captured. While CARD-FISH gave an overview about the community composition, more detailed information was gained by pyrosequencing. Bacteria were more abundant than Archaea. The dominating phylum in all samples was Proteobacteria, especially Betaproteobacteria and Deltaproteobacteria. Furthermore, sequences of Bacteroidetes, Verrucomicrobia, Acidobacteria, Chlorobi, Nitrospira, Spirochaetes, Gammaproteobacteria, Alphaproteobacteria, Chloroflexi, and Gemmatimonadetes were found. The site ammonium concentration, water content and organic matter content revealed to be strongest environmental predictors explaining the observed significant differences in the community composition between sampling sites. Copyright © 2011 Elsevier GmbH. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017ChOE...31..103Y','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017ChOE...31..103Y"><span>Study on sound-speed dispersion in a sandy sediment at frequency ranges of 0.5-3 kHz and 90-170 kHz</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Yu, Sheng-qi; Liu, Bao-hua; Yu, Kai-ben; Kan, Guang-ming; Yang, Zhi-guo</p> <p>2017-03-01</p> <p>In order to study the properties of sound-speed dispersion in a sandy sediment, the sound speed was measured both at high frequency (90-170 kHz) and low frequency (0.5-3 kHz) in laboratory environments. At high frequency, a sampling measurement was conducted with boiled and uncooked sand samples collected from the bottom of a large water tank. The sound speed was directly obtained through transmission measurement using single source and single hydrophone. At low frequency, an in situ measurement was conducted in the water tank, where the sandy sediment had been homogeneously paved at the bottom for a long time. The sound speed was indirectly inverted according to the traveling time of signals received by three buried hydrophones in the sandy sediment and the geometry in experiment. The results show that the mean sound speed is approximate 1710-1713 m/s with a weak positive gradient in the sand sample after being boiled (as a method to eliminate bubbles as much as possible) at high frequency, which agrees well with the predictions of Biot theory, the effective density fluid model (EDFM) and Buckingham's theory. However, the sound speed in the uncooked sandy sediment obviously decreases (about 80%) both at high frequency and low frequency due to plenty of bubbles in existence. And the sound-speed dispersion performs a weak negative gradient at high frequency. Finally, a water-unsaturated Biot model is presented for trying to explain the decrease of sound speed in the sandy sediment with plenty of bubbles.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2820965','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2820965"><span>Archaeal Diversity and Distribution along Thermal and Geochemical Gradients in Hydrothermal Sediments at the Yonaguni Knoll IV Hydrothermal Field in the Southern Okinawa Trough▿ †</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Nunoura, Takuro; Oida, Hanako; Nakaseama, Miwako; Kosaka, Ayako; Ohkubo, Satoru B.; Kikuchi, Toru; Kazama, Hiromi; Hosoi-Tanabe, Shoko; Nakamura, Ko-ichi; Kinoshita, Masataka; Hirayama, Hisako; Inagaki, Fumio; Tsunogai, Urumu; Ishibashi, Jun-ichiro; Takai, Ken</p> <p>2010-01-01</p> <p>A variety of archaeal lineages have been identified using culture-independent molecular phylogenetic surveys of microbial habitats occurring in deep-sea hydrothermal environments such as chimney structures, sediments, vent emissions, and chemosynthetic macrofauna. With the exception of a few taxa, most of these archaea have not yet been cultivated, and their physiological and metabolic traits remain unclear. In this study, phylogenetic diversity and distribution profiles of the archaeal genes encoding small subunit (SSU) rRNA, methyl coenzyme A (CoA) reductase subunit A, and the ammonia monooxygenase large subunit were characterized in hydrothermally influenced sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa Trough. Sediment cores were collected at distances of 0.5, 2, or 5 m from a vent emission (90°C). A moderate temperature gradient extends both horizontally and vertically (5 to 69°C), indicating the existence of moderate mixing between the hydrothermal fluid and the ambient sediment pore water. The mixing of reductive hot hydrothermal fluid and cold ambient sediment pore water establishes a wide spectrum of physical and chemical conditions in the microbial habitats that were investigated. Under these different physico-chemical conditions, variability in archaeal phylotype composition was observed. The relationship between the physical and chemical parameters and the archaeal phylotype composition provides important insight into the ecophysiological requirements of uncultivated archaeal lineages in deep-sea hydrothermal vent environments, giving clues for approximating culture conditions to be used in future culturing efforts. PMID:20023079</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/392367-use-sediment-quality-triad-evaluate-metal-constituents-soda-creek-idaho','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/392367-use-sediment-quality-triad-evaluate-metal-constituents-soda-creek-idaho"><span></span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Hunter, C.; Simpson, J.; Kovats, Z.</p> <p></p> <p>Sediments from Soda Creek were evaluated using the Sediment Quality Triad as part of investigations being conducted at the Monsanto Company plant in Soda Springs, Idaho. Information collected by an ecological assessment included metal concentrations (arsenic, cadmium, copper, molybdenum, nickel, selenium, silver, and vanadium), benthic fauna community structure, and sediment toxicity. The collected sediments were composed of sandy-silt sized particles, with 2.4% to 9.1% organic carbon. Metal concentrations at sample stations were elevated relative to sediments collected from reference stations. For example, average cadmium concentrations ranged from 13 to 48 mg/kg at sample stations and 0.72 to 3.2 mg/kg atmore » reference stations; selenium concentrations ranged from 4.7 to 91 mg/kg at sample stations and 0.82 to 2.7 mg/kg at reference stations. Soda Creek has a relatively low flow gradient and the benthic fauna at both reference and sample stations was dominated by oligochaete worms and chironomid midge larvae. Taxonomic richness at individual sites ranged from 4.3 to 6.7 and 6 to 10.3 at reference and sample sites, respectively. There was no significant evidence of toxicity at any location sampled. Cluster analysis showed that the benthic community structure of many of the sample stations could not be distinguished from the reference stations. Canonical correlation analysis showed there was a significant relationship between benthic fauna and metal concentration, but there was not a consistent difference between sample and reference stations. For Soda Creek, local phenomena were more significant to benthic community structure than large-scale patterns of metal accumulation. Using the Triad approach, the authors concluded there has been no adverse effect of metal concentrations on the benthic community of Soda Creek.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AGUSMNS51A..05H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AGUSMNS51A..05H"><span>Are Microbial Nanowires Responsible for Geoelectrical Changes at Hydrocarbon Contaminated Sites?</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hager, C.; Atekwana, E. A.; Gorby, Y. A.; Duris, J. W.; Allen, J. P.; Atekwana, E. A.; Ownby, C.; Rossbach, S.</p> <p>2007-05-01</p> <p>Significant advances in near-surface geophysics and biogeophysics in particular, have clearly established a link between geoelectrical response and the growth and enzymatic activities of microbes in geologic media. Recent studies from hydrocarbon contaminated sites suggest that the activities of distinct microbial populations, specifically syntrophic, sulfate reducing, and dissimilatory iron reducing microbial populations are a contributing factor to elevated sediment conductivity. However, a fundamental mechanistic understanding of the processes and sources resulting in the measured electrical response remains uncertain. The recent discovery of bacterial nanowires and their electron transport capabilities suggest that if bacterial nanowires permeate the subsurface, they may in part be responsible for the anomalous conductivity response. In this study we investigated the microbial population structure, the presence of nanowires, and microbial-induced alterations of a hydrocarbon contaminated environment and relate them to the sediments' geoelectrical response. Our results show that microbial communities varied substantially along the vertical gradient and at depths where hydrocarbons saturated the sediments, ribosomal intergenic spacer analysis (RISA) revealed signatures of microbial communities adapted to hydrocarbon impact. In contrast, RISA profiles from a background location showed little community variations with depth. While all sites showed evidence of microbial activity, a scanning electron microscope (SEM) study of sediment from the contaminated location showed pervasive development of "nanowire-like structures" with morphologies consistent with nanowires from laboratory experiments. SEM analysis suggests extensive alteration of the sediments by microbial Activity. We conclude that, excess organic carbon (electron donor) but limited electron acceptors in these environments cause microorganisms to produce nanowires to shuttle the electrons as they seek for distant electron acceptors. Hence, electron flow via bacterial nanowires may contribute to the geoelectrical response.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/11352010','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/11352010"><span>Harvesting energy from the marine sediment--water interface.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Reimers, C E; Tender, L M; Fertig, S; Wang, W</p> <p>2001-01-01</p> <p>Pairs of platinum mesh or graphite fiber-based electrodes, one embedded in marine sediment (anode), the other in proximal seawater (cathode), have been used to harvest low-level power from natural, microbe established, voltage gradients at marine sediment-seawater interfaces in laboratory aquaria. The sustained power harvested thus far has been on the order of 0.01 W/m2 of electrode geometric area but is dependent on electrode design, sediment composition, and temperature. It is proposed that the sediment/anode-seawater/cathode configuration constitutes a microbial fuel cell in which power results from the net oxidation of sediment organic matter by dissolved seawater oxygen. Considering typical sediment organic carbon contents, typical fluxes of additional reduced carbon by sedimentation to sea floors < 1,000 m deep, and the proven viability of dissolved seawater oxygen as an oxidant for power generation by seawater batteries, it is calculated that optimized power supplies based on the phenomenon demonstrated here could power oceanographic instruments deployed for routine long-term monitoring operations in the coastal ocean.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://onlinelibrary.wiley.com/doi/10.1002/9781118648551.ch10/summary','USGSPUBS'); return false;" href="http://onlinelibrary.wiley.com/doi/10.1002/9781118648551.ch10/summary"><span>Vegetation as a tool in the interpretation of fluvial geomorphic processes and landforms</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Hupp, Cliff R.; Dufour, S; Bornette, G</p> <p>2016-01-01</p> <p>This chapter exemplifies that vegetation can be used as a tool for geomorphic interpretation in several major ways. It presents a general overview: through dendrogeomorphic analysis (tree rings) to estimate the timing of important geomorphic events including floods and mass wasting and to estimate rates of erosion and sedimentation; through the documentation and interpretation of species distributional patterns that are established in response to prevailing hydrogeomorphic conditions; and through the role that it plays, depending on size, shape and growth form, in flow rates and subsequent erosion and deposition processes. Floods, from prolonged inundation characteristic of relatively large, low-gradient basins to high-gradient and short-period destructive events, are the most important extrinsic factor in bottomland systems. Vegetation organization, composition and plant community dynamics on river floodplains are controlled by disturbance type and scale, and biological characteristics of plants linked to resistance to disturbance, resilience and competitive ability.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/17698480','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/17698480"><span>Influence of macrofaunal assemblages and environmental heterogeneity on microphytobenthic production in experimental systems.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Dyson, Kirstie E; Bulling, Mark T; Solan, Martin; Hernandez-Milian, Gema; Raffaelli, David G; White, Piran C L; Paterson, David M</p> <p>2007-10-22</p> <p>Despite the complexity of natural systems, heterogeneity caused by the fragmentation of habitats has seldom been considered when investigating ecosystem processes. Empirical approaches that have included the influence of heterogeneity tend to be biased towards terrestrial habitats; yet marine systems offer opportunities by virtue of their relative ease of manipulation, rapid response times and the well-understood effects of macrofauna on sediment processes. Here, the influence of heterogeneity on microphytobenthic production in synthetic estuarine assemblages is examined. Heterogeneity was created by enriching patches of sediment with detrital algae (Enteromorpha intestinalis) to provide a source of allochthonous organic matter. A gradient of species density for four numerically dominant intertidal macrofauna (Hediste diversicolor, Hydrobia ulvae, Corophium volutator, Macoma balthica) was constructed, and microphytobenthic biomass at the sediment surface was measured. Statistical analysis using generalized least squares regression indicated that heterogeneity within our system was a significant driving factor that interacted with macrofaunal density and species identity. Microphytobenthic biomass was highest in enriched patches, suggesting that nutrients were obtained locally from the sediment-water interface and not from the water column. Our findings demonstrate that organic enrichment can cause the development of heterogeneity which influences infaunal bioturbation and consequent nutrient generation, a driver of microphytobenthic production.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23717998','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23717998"><span>[Mechanisms of grass in slope erosion control in Loess sandy soil region of Northwest China].</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhao, Chun-Hong; Gao, Jian-En; Xu, Zhen</p> <p>2013-01-01</p> <p>By adopting the method of simulated precipitation and from the viewpoint of slope hydrodynamics, in combining with the analysis of soil resistance to erosion, a quantitative study was made on the mechanisms of grass in controlling the slope erosion in the cross area of wind-water erosion in Loess Plateau of Northwest China under different combinations of rainfall intensity and slope gradient, aimed to provide basis to reveal the mechanisms of vegetation in controlling soil erosion and to select appropriate vegetation for the soil and water conservation in Loess Plateau. The grass Astragalus adsurgens with the coverage about 40% could effectively control the slope erosion. This grass had an efficiency of more than 70% in reducing sediment, and the grass root had a greater effect than grass canopy. On bare slope and on the slopes with the grass plant or only the grass root playing effect, there existed a functional relation between the flow velocity on the slopes and the rainfall intensity and slope gradient (V = DJ(0.33 i 0.5), where V is flow velocity, D is the comprehensive coefficient which varies with different underlying surfaces, i is rainfall intensity, and J is slope gradient). Both the grass root and the grass canopy could markedly decrease the flow velocity on the slopes, and increase the slope resistance, but the effect of grass root in decreasing flow velocity was greater while the effect in increasing resistance was smaller than that of grass canopy. The effect of grass root in increasing slope resistance was mainly achieved by increasing the sediment grain resistance, while the effect of canopy was mainly achieved by increasing the slope form resistance and wave resistance. The evaluation of the soil resistance to erosion by using a conceptual model of sediment generation by overland flow indicated that the critical shear stress value of bare slope and of the slopes with the grass plant or only the grass root playing effect was 0.533, 1.672 and 0.925 Pa, respectively.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..1918137B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..1918137B"><span>Implications of sediment transport by subglacial water flow for interpreting contemporary glacial erosion rates</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Beaud, Flavien; Flowers, Gwenn E.; Venditti, Jeremy G.</p> <p>2017-04-01</p> <p>The role of glaciers in landscape evolution is central to the interactions between climate and tectonic forces at high latitudes and in mountainous regions. Sediment yields from glacierized basins are used to quantify contemporary erosion rates on seasonal to decadal timescales, often under the assumption that subglacial water flow is the main contributor to these yields. Two recent studies have furthermore used such sediment fluxes to calibrate a glacial erosion rule, where erosion rate scales with ice sliding speed raised to a power greater than one. Subglacial sediment transport by water flow has however seldom been studied, thus the controls on sediment yield from glacierized basins remain enigmatic. To bridge this gap, we develop a 1-D model of morphodynamics in semi-circular bedrock-floored subglacial channels. We adapt a sediment conservation law from the fluvial literature, developed for both mixed bedrock / alluvial and alluvial conditions, to subglacial channels. Channel evolution is a function of the traditional melt-opening due to viscous heat dissipation from the water flow, and creep closure of the overlying ice, to which we add the closure or enlargement due to sediment deposition or removal, respectively. Using a simple ice geometry representing a land-terminating glacier, we find that the shear stresses produced by the water flow on the bed decrease significantly near the terminus. As the ice thins, creep closure decreases and large hydraulic potential gradients cannot be sustained. The resulting gradients in sediment transport lead to a bottleneck, and sediment accumulates if the sediment supply is adequate. A similar bottleneck occurs if a channel is well established and water discharge drops. Whether such constriction happens in space of time, in the presence of a sufficiently large sediment supply sediment accumulates temporarily near the terminus, followed shortly thereafter by enhanced sediment transport. Reduction in the cross-sectional area of the channel by sediment storage leads to enhanced shear stresses and transport rates. As a result, assuming a constant sediment input and a seasonal water forcing sediment delivery to the proglacial environment undergoes two phases determined by a combination of meltwater discharge and channel development. In the stage of the melt season dominated by channel growth and increasing discharge, the sediment yield is virtually constant and matches the input. In contrast, during the stage dominated by channel closure and decreasing discharge the sediment yield exhibits daily fluctuations caused by temporary sediment storage in the channel. Our findings thus suggest that contemporary sediment yields may be controlled by the dynamics of subglacial water flow in the vicinity of the terminus. This provides a new perspective for the interpretation of proglacial sediment fluxes, fluxes which are central to refining glacial erosion laws utilized in landscape evolution models.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li class="active"><span>14</span></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_14 --> <div id="page_15" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li class="active"><span>15</span></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="281"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/1655757','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/1655757"><span>Interactions between globular proteins and F-actin in isotonic saline solution.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lakatos, S; Minton, A P</p> <p>1991-10-05</p> <p>Solutions of each of three different globular proteins (cytochrome c, chromophorically labeled serum albumin, and chromophorically labeled aldolase), mixed with another unlabeled globular protein or with fibrous actin, were prepared in pH 8.0 Tris-HCl buffer containing 0.15 M NaCl. Each solution was centrifuged at low speed, at 5 degrees C, until unassociated globular protein in solution achieved sedimentation equilibrium. Individual absorbance gradients of both macrosolutes in the mixtures subsequent to centrifugation were obtained via optical scans of the centrifuge tubes at two wavelengths. The gradients of each macrosolute in mixtures of two globular proteins revealed no association of globular proteins under the conditions of these experiments, but perturbation of the gradients of serum albumin, aldolase, and cytochrome c in the presence of F-actin indicated association of all three globular proteins with F-actin. Perturbation of actin gradients in the presence of serum albumin and aldolase suggested partial depolymerization of the F-actin by the globular protein. Analysis of the data with a simple phenomenological model relating free globular protein, bound globular protein, and total actin concentration provided estimates of the respective equilibrium constants for association of serum albumin and aldolase with F-actin, under the conditions of these experiments, of the order of 0.1 microM-1.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014QSRv...93..106B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014QSRv...93..106B"><span>Chronology of Quaternary coastal aeolianite deposition and the drowned shorelines of southwestern Western Australia - a reappraisal</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Brooke, B. P.; Olley, J. M.; Pietsch, T.; Playford, P. E.; Haines, P. W.; Murray-Wallace, C. V.; Woodroffe, C. D.</p> <p>2014-06-01</p> <p>Aeolianite successions of low-gradient continental margins commonly show complex records of coastal dune deposition linked to a wide range of sea-level positions and climatic periods of the middle and late Pleistocene, recording both regional and broader-scale drivers of sediment production, coastal dune development and landform preservation. To better characterise the general pattern of sedimentation that occurs over Quaternary glacial-interglacial cycles on low-gradient, temperate carbonate continental shelves we examine the morphology, stratigraphy and age of aeolianite deposits in the Perth region, Western Australia. This includes an analysis of well-defined drowned coastal landforms preserved on the adjacent shelf. New and previously published optical ages provide a preliminary timeframe for the deposition of aeolianite in the Perth region and on Rottnest Island, 17 km offshore. An extensive aeolianite ridge near Perth, representing a former barrier, has Optically Stimulated Luminesence (OSL) ages that range from 120 ± 12 to 103 ± 10 ka (MIS 5e-5a in the context of associated age uncertainties). OSL ages for an exposure in the same ridge 2.5 km inland, record the onlap of much older aeolianite, OSL age 415 ± 70 ka, by shell-rich estuarine beds, OSL age 290 ± 30 ka. A further 5.5 km inland from the coast, two thick aeolianite units, separated by a well-developed palaeosol, have stratigraphically consistent OSL ages of 310 ± 30 and 155 ± 20 ka. In contrast, aeolianite units that form the northern coast of Rottnest Island have OSL ages of 77 ± 12 ka and 27 ± 5 ka. The new OSL ages and previously reported TL and U/Th ages indicate that the bulk of the island comprises dunes deposited around the end of the Last Interglacial sensu lato (MIS 5a-4) and during the Last Glacial (MIS 4-2), accumulating over a Last Interglacial coral reef and basal calcarenite. Drowned barrier and dune landforms preserved on the adjacent continental shelf reveal that barriers were formed during periods of intermediate sea level (e.g. MIS 3) and significant dune mobility occurred when the shelf was subaerially exposed. The pattern of shelf sedimentation discernible in the Perth region - large-scale coastal carbonate dune deposition during periods of high and intermediate sea level and reactivation during glacial lowstands - is largely consistent with published stratigraphic and age data for large-scale aeolianite deposits on other low-gradient carbonate shelves. Based on these data, a general model is proposed for the cycle of Quaternary sedimentation and landform evolution that occurs on these shelves, which are dynamic sedimentary environments with coastal landforms and sedimentary successions that are very sensitive to erosion and sediment reworking.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMPP43B2315C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMPP43B2315C"><span>Application of Lacustrine Biomarkers to Reconstruct Late Holocene Temperature Change in the Saskatchewan Prairies.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cavazzin, B.; Toney, J. L.; Pearson, E. J.; Schouten, S.; Leavitt, P.; Haig, H.</p> <p>2016-12-01</p> <p>Extreme hydrological events such as prolonged droughts are among Canada's costliest natural calamities resulting in disastrous impacts on agriculture, forestry, industry, and ecosystems. Investigations into climate variations prior to significant anthropogenic modification are essential to build effective projection models and adaptation strategies needed to reduce economic, social and environmental vulnerability within the prairies eco-region. In this study we use organic geochemical analysis of lipids produced by bacteria, archaea and algae in lake and catchment sediments. These organic compounds are highly resistant to degradation and accumulate in the sediments as geochemical fossils or biomarkers. In particular we focus on Glycerol Dialkyl Glycerol Tetraethers (GDGT) biomarkers which are ubiquitous in soils and lacustrine environments and can be applied as quantitative temperature proxies in regions of the world where other proxies cannot be used. The aim of this study is to examine the relationship between GDGT distribution and temperature and assess the potential for establishing a GDGT-based paleothermometer for the Canadian prairies lakes. Our training set includes GDGT data from core-top sediments from 105 lakes across spanning a 5° latitudinal gradient and spring surface water temperature gradient of about 9°C. We identified 30 known bacterial and archaeal GDGTs, including the novel archaeal tetraether lipids with a cyclohexyl ring. These compounds are present in varying proportions in all the lakes investigated, suggesting a broad range of GDGT inputs and also potential in-situ production. We analysed the relationships between individual GDGT compounds against temperature, pH, conductivity, water depth and other environmental variables. We also examined previously published GDGT-environment indices in order to test the applicability of previously developed GDGT-based paleotemperature calibrations to the prairies lakes and assess whether a new calibration is needed specifically for this region.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/2765534','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/2765534"><span>Macro and micro rate zonal analytical centrifugation of polydisperse and slowly diffusing sedimenting systems in isovolumetric density gradients. Application to cartilage proteoglycans.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Müller, F J; Pezon, C F; Pita, J C</p> <p>1989-06-13</p> <p>A method to study the polydispersity of zonally sedimenting and slowly diffusing macromolecules or particles in isokinetic or isovolumetric density gradients is presented. First, a brief theory is given for predicting the zonal profile after a "triangular" (or "inverse") zone is centrifuged. This type of zone is essential to preserve hydrodynamic stability of the very slowly diffusing polydisperse solutes. It is proven, both by semitheoretical considerations and by computer calculations, that the resulting concentration profile of macrosolute is almost identical with that obtainable with a rectangular zone coextensive with the triangular one and carrying the same total mass. Next, practical procedures are described for the convectionless layering of very small triangular zones (50 microL or less). The linearity and stability of the zones are experimentally tested and verified. Finally, the method is applied to cartilage proteoglycan preparations that included either the monomeric molecules only or both the monomeric and the aggregated ones. The zonal results are compared with those obtained by using conventional boundary sedimentation. The two sets of results are seen to coincide fairly well, thus proving that the present technique can add to preparative zonal centrifugation the analytical precision of boundary sedimentation. A multimodal polydisperse system is suggested to describe the aggregated proteoglycan macromolecules.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMGC21H1195P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMGC21H1195P"><span>Ostracod-inferred conductivity transfer function and its utility in palaeo-conductivity reconstruction in Tibetan Lakes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Peng, P.; Zhu, L.; Guo, Y.; Wang, J.; Fürstenberg, S.; Ju, J.; Wang, Y.; Frenzel, P.</p> <p>2016-12-01</p> <p>Ostracod, was used as a sensitive monitor in palaeo-environmental change research. Ostracod transfer function was developing as a quantitate indicator in palaeo-limnology research. Plenty of lakes scattered on the Tibetan Plateau supplied sediments for analyzing indexes of environment in past climate change research. This application was research on samples of sub-fossil ostracod and its habitat condition, including water sample and water parameters, to produce a database for a forward transfer function based on gradient analyses. This transfer function was used for environment reconstruction of Tibetan lakes to preview past climate changes. In our research, twelve species belonging to ten genus were documented from 114 studied samples in 34 lakes. This research illustrated a specific conductivity gradient gradually increased by L.sinensis-L.dorsotuberosa-C.xizangensis, L.dorsotuberosa-L.inopinata and L.inopinata to indicate fresh-lightly brackish, brackish, brine water condition, respectively. Gradient analysis revealed that specific conductivity was the most important variable drove the distribution of sub-fossil Ostracods. A specific conductivity transfer function using a weighted averaging partial least squares (WA-PLS) model was set up to reconstruct palaeo-specific conductivity. The model presented a good correlation of measured and estimated specific conductivity (R2=0.67), a relative low root mean squared error of prediction (RMSEP=0.47). Multi-proxies, including ostracod assemblages, ostracod-inferred lake level and specific conductivity, mean grain size, total organic carbon and total inorganic carbon of sediment from core of Tibetan Lakes, inferred the palaeo-climate change history of the research area. The environmental change probably was an adaption to the weakening activities of India monsoon since mid-Holocene inferred from the comparable climatic change records from the Tibetan Plateau and relative monsoonal areas.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4272742','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4272742"><span>amoA Gene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Li, Jialin; Nedwell, David B.; Beddow, Jessica; Dumbrell, Alex J.; McKew, Boyd A.; Thorpe, Emma L.</p> <p>2014-01-01</p> <p>Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw]−1 day−1 in June, increasing to 37.4 μmol N gdw−1 day−1 in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw−1 day−1 in June, increasing to 11.7 μmol N gdw−1 day−1 in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. PMID:25326303</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25326303','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25326303"><span>amoA Gene abundances and nitrification potential rates suggest that benthic ammonia-oxidizing bacteria and not Archaea dominate N cycling in the Colne Estuary, United Kingdom.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Li, Jialin; Nedwell, David B; Beddow, Jessica; Dumbrell, Alex J; McKew, Boyd A; Thorpe, Emma L; Whitby, Corinne</p> <p>2015-01-01</p> <p>Nitrification, mediated by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA), is important in global nitrogen cycling. In estuaries where gradients of salinity and ammonia concentrations occur, there may be differential selections for ammonia-oxidizer populations. The aim of this study was to examine the activity, abundance, and diversity of AOA and AOB in surface oxic sediments of a highly nutrified estuary that exhibits gradients of salinity and ammonium. AOB and AOA communities were investigated by measuring ammonia monooxygenase (amoA) gene abundance and nitrification potentials both spatially and temporally. Nitrification potentials differed along the estuary and over time, with the greatest nitrification potentials occurring mid-estuary (8.2 μmol N grams dry weight [gdw](-1) day(-1) in June, increasing to 37.4 μmol N gdw(-1) day(-1) in January). At the estuary head, the nitrification potential was 4.3 μmol N gdw(-1) day(-1) in June, increasing to 11.7 μmol N gdw(-1) day(-1) in January. At the estuary head and mouth, nitrification potentials fluctuated throughout the year. AOB amoA gene abundances were significantly greater (by 100-fold) than those of AOA both spatially and temporally. Nitrosomonas spp. were detected along the estuary by denaturing gradient gel electrophoresis (DGGE) band sequence analysis. In conclusion, AOB dominated over AOA in the estuarine sediments, with the ratio of AOB/AOA amoA gene abundance increasing from the upper (freshwater) to lower (marine) regions of the Colne estuary. These findings suggest that in this nutrified estuary, AOB (possibly Nitrosomonas spp.) were of major significance in nitrification. Copyright © 2015, American Society for Microbiology. All Rights Reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27826296','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27826296"><span>Physical Factors Correlate to Microbial Community Structure and Nitrogen Cycling Gene Abundance in a Nitrate Fed Eutrophic Lagoon.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Highton, Matthew P; Roosa, Stéphanie; Crawshaw, Josie; Schallenberg, Marc; Morales, Sergio E</p> <p>2016-01-01</p> <p>Nitrogenous run-off from farmed pastures contributes to the eutrophication of Lake Ellesmere, a large shallow lagoon/lake on the east coast of New Zealand. Tributaries periodically deliver high loads of nitrate to the lake which likely affect microbial communities therein. We hypothesized that a nutrient gradient would form from the potential sources (tributaries) creating a disturbance resulting in changes in microbial community structure. To test this we first determined the existence of such a gradient but found only a weak nitrogen (TN) and phosphorous gradient (DRP). Changes in microbial communities were determined by measuring functional potential (quantification of nitrogen cycling genes via nifH , nirS , nosZI , and nosZII using qPCR), potential activity (via denitrification enzyme activity), as well as using changes in total community (via 16S rRNA gene amplicon sequencing). Our results demonstrated that changes in microbial communities at a phylogenetic (relative abundance) and functional level (proportion of the microbial community carrying nifH and nosZI genes) were most strongly associated with physical gradients (e.g., lake depth, sediment grain size, sediment porosity) and not nutrient concentrations. Low nitrate influx at the time of sampling is proposed as a factor contributing to the observed patterns.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1578759','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1578759"><span>Sinking velocities of phytoplankton measured on a stable density gradient by laser scanning</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Walsby, Anthony E; Holland, Daryl P</p> <p>2005-01-01</p> <p>Two particular difficulties in measuring the sinking velocities of phytoplankton cells are preventing convection within the sedimenting medium and determining the changing depth of the cells. These problems are overcome by using a density-stabilized sedimentation column scanned by a laser. For freshwater species, a suspension of phytoplankton is layered over a vertical density gradient of Percoll solution; as the cells sink down the column their relative concentration is measured by the forward scattering of light from a laser beam that repeatedly scans up and down the column. The Percoll gradient stabilizes the column, preventing vertical mixing by convection, radiation or perturbation of density by the descending cells. Measurements were made on suspensions of 15 μm polystyrene microspheres with a density of 1050 kg m−3; the mean velocity was 6.28 μm s−1, within 1.5% of that calculated by the Stokes equation, 6.36 μm s−1. Measurements made on the filamentous cyanobacterium Planktothrix rubescens gave mean velocities within the theoretical range of values based on the range of size, shape, orientation and density of the particles in a modified Stokes equation. Measurements on marine phytoplankton may require density gradients prepared with other substances. PMID:16849271</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/163230','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/163230"><span>The determination of density and molecular weight distributions of lipoproteins by sedimentation equilibrium.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Jeffrey, P D; Nichol, L W; Smith, G D</p> <p>1975-01-25</p> <p>A method is presented by which an experimental record of total concentration as a function of radial distance, obtained in a sedimentation equilibrium experiment conducted with a noninteracting mixture in the absence of a density gradient, may be analyzed to obtain the unimodal distributions of molecular weight and of partial molar volume when these vary concomitantly and continuously. Particular attention is given to the caracterization of classes of lipoproteins exhibiting Gaussian distributions of these quantities, although the analysis is applicable to other types of unimodal distribution. Equations are also formulated permitting the definition of the corresponding distributions of partial specific volume and of density. The analysis procedure is based on a method (employing Laplace transforms) developed previously, but differs from it in that it avoids the necessity of differentiating experimental results, which introduces error. The method offers certain advantages over other procedures used to characterize and compare lipoprotein samples (exhibiting unimodal distributions) with regard to the duration of the experiment, economy of the sample, and, particularly, the ability to define in principle all of the relevant distributions from one sedimentation equilibrium experiment and an external measurement of the weight average partial specific volume. These points and the steps in the analysis procedure are illustrated with experimental results obtained in the sedimentation equilibrium of a sample of human serum low density lipoprotein. The experimental parameters (such as solution density, column height, and angular velocity) used in the conduction of these experiments were selected on the basis of computer-simulated examples, which are also presented. These provide a guide for other workers interested in characterizing lipoproteins of this class.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://pubs.water.usgs.gov/sir20045190/','USGSPUBS'); return false;" href="http://pubs.water.usgs.gov/sir20045190/"><span>Design and analysis of a natural-gradient ground-water tracer test in a freshwater tidal wetland, West Branch Canal Creek, Aberdeen Proving Ground, Maryland</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Olsen, Lisa D.; Tenbus, Frederick J.</p> <p>2005-01-01</p> <p>A natural-gradient ground-water tracer test was designed and conducted in a tidal freshwater wetland at West Branch Canal Creek, Aberdeen Proving Ground, Maryland. The objectives of the test were to characterize solute transport at the site, obtain data to more accurately determine the ground-water velocity in the upper wetland sediments, and to compare a conservative, ionic tracer (bromide) to a volatile tracer (sulfur hexafluoride) to ascertain whether volatilization could be an important process in attenuating volatile organic compounds in the ground water. The tracer test was conducted within the upper peat unit of a layer of wetland sediments that also includes a lower clayey unit; the combined layer overlies an aquifer. The area selected for the test was thought to have an above-average rate of ground-water discharge based on ground-water head distributions and near-surface detections of volatile organic compounds measured in previous studies. Because ground-water velocities in the wetland sediments were expected to be slow compared to the underlying aquifer, the test was designed to be conducted on a small scale. Ninety-seven ?-inch-diameter inverted-screen stainless-steel piezometers were installed in a cylindrical array within approximately 25 cubic feet (2.3 cubic meters) of wetland sediments, in an area with a vertically upward hydraulic gradient. Fluorescein dye was used to qualitatively evaluate the hydrologic integrity of the tracer array before the start of the tracer test, including verifying the absence of hydraulic short-circuiting due to nonnatural vertical conduits potentially created during piezometer installation. Bromide and sulfur hexafluoride tracers (0.139 liter of solution containing 100,000 milligrams per liter of bromide ion and 23.3 milligrams per liter of sulfur hexafluoride) were co-injected and monitored to generate a dataset that could be used to evaluate solute transport in three dimensions. Piezometers were sampled 2 to 15 times each, from July 1998 through September 1999, to assess background conditions and monitor tracer movement. During the test, 644 samples were analyzed for fluorescein, 617 samples were analyzed for bromide with an ion-selective electrode, 213 samples were analyzed for bromide with colorimetric methods, and 603 samples were analyzed for sulfur hexafluoride, including samples collected prior to tracer injection to determine background concentrations. Additional samples were analyzed for volatile organic compounds (96 samples) and methane (37 samples) to determine the distribution of these contaminants and the extent of methanogenic conditions within the tracer array; however, these data were not used for the analysis of the test. During the tracer test, the fluorescein dye, bromide, and sulfur hexafluoride were transported predominantly in the upward direction, although all three tracers also moved outward in all directions from the injection point, and it is likely that some tracer mass moved beyond the lateral edges of the array. An analysis of the tracer-test data was performed through the use of breakthrough curves and isoconcentration contour plots. Results show that movement of the fluorescein dye, a non-conservative tracer, was retarded compared to the other two tracers, likely as a result of sorption onto the wetland sediments. Suspected loss of tracer mass along the lateral edges of the array prevented a straightforward quantitative analysis of tracer transport and ground-water velocity from the bromide and sulfur-hexafluoride data. In addition, the initial density of the bromide/sulfur hexafluoride solution (calculated to be 1.097 grams per milli2 Ground-Water Tracer Test, West Branch Canal Creek, Aberdeen Proving Ground, MD liter) could have caused the solution to sink below the injection point before undergoing dilution and moving back up into the array. For these reasons, the data analysis in this report was performed largely through qualitative method</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70018577','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70018577"><span>A revised velocity-reversal and sediment-sorting model for a high-gradient, pool-riffle stream</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Thompson, D.M.; Wohl, E.E.; Jarrett, R.D.</p> <p>1996-01-01</p> <p>Sediment-sorting processes related to varying channel-bed morphology were investigated from April to November 1993 along a 1-km pool-riffle and step-pool reach of North Saint Vrain Creek, a small mountain stream in the Rocky Mountains of northern Colorado. Measured cross-sectional areas of flow were used to suggest higher velocities in pools than in riffles at high flow. Three hundred and sixteen tracer particles, ranging in size from 16 mm to 256 mm, were placed in two separate pool-riffle-pool sequences and used to assess sediment-sorting patterns and sediment-transport competence variations. Tracer-particle depositional evidence indicated higher sediment-transport competence in pools than in riffles at high flow. Pool-riffle sediment sorting may be created by velocity reversals, and more localized sorting results from gravitational forces along the upstream sloping portion of the channel bed located at the downstream end of pools.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1414148','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1414148"><span>Mapping longitudinal stream connectivity in the North St. Vrain Creek watershed of Colorado</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Wohl, Ellen; Rathburn, Sara; Chignell, Stephen</p> <p></p> <p>We use reach-scale stream gradient as an indicator of longitudinal connectivity for water, sediment, and organic matter in a mountainous watershed in Colorado. Stream reaches with the highest gradient tend to have narrow valley bottoms with limited storage space and attenuation of downstream fluxes, whereas stream reaches with progressively lower gradients have progressively more storage and greater attenuation. We compared the distribution of stream gradient to stream-reach connectivity rankings that incorporated multiple potential control variables, including lithology, upland vegetation, hydroclimatology, road crossings, and flow diversions. We then assessed connectivity rankings using different weighting schemes against stream gradient and against field-basedmore » understanding of relative connectivity within the watershed. Here, we conclude that stream gradient, which is simple to map using publicly available data and digital elevation models, is the most robust indicator of relative longitudinal connectivity within the river network.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/pages/biblio/1414148-mapping-longitudinal-stream-connectivity-north-st-vrain-creek-watershed-colorado','SCIGOV-DOEP'); return false;" href="https://www.osti.gov/pages/biblio/1414148-mapping-longitudinal-stream-connectivity-north-st-vrain-creek-watershed-colorado"><span>Mapping longitudinal stream connectivity in the North St. Vrain Creek watershed of Colorado</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/pages">DOE PAGES</a></p> <p>Wohl, Ellen; Rathburn, Sara; Chignell, Stephen; ...</p> <p>2016-05-06</p> <p>We use reach-scale stream gradient as an indicator of longitudinal connectivity for water, sediment, and organic matter in a mountainous watershed in Colorado. Stream reaches with the highest gradient tend to have narrow valley bottoms with limited storage space and attenuation of downstream fluxes, whereas stream reaches with progressively lower gradients have progressively more storage and greater attenuation. We compared the distribution of stream gradient to stream-reach connectivity rankings that incorporated multiple potential control variables, including lithology, upland vegetation, hydroclimatology, road crossings, and flow diversions. We then assessed connectivity rankings using different weighting schemes against stream gradient and against field-basedmore » understanding of relative connectivity within the watershed. Here, we conclude that stream gradient, which is simple to map using publicly available data and digital elevation models, is the most robust indicator of relative longitudinal connectivity within the river network.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70174041','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70174041"><span>Effects of salt pond restoration on benthic flux: Sediment as a source of nutrients to the water column</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Topping, Brent R.; Kuwabara, James S.; Carter, James L.; Garrettt, Krista K.; Mruz, Eric; Piotter, Sarah; Takekawa, John Y.</p> <p>2016-01-01</p> <p>Understanding nutrient flux between the benthos and the overlying water (benthic flux) is critical to restoration of water quality and biological resources because it can represent a major source of nutrients to the water column. Extensive water management commenced in the San Francisco Bay, Beginning around 1850, San Francisco Bay wetlands were converted to salt ponds and mined extensively for more than a century. Long-term (decadal) salt pond restoration efforts began in 2003. A patented device for sampling porewater at varying depths, to calculate the gradient, was employed between 2010 and 2012. Within the former ponds, the benthic flux of soluble reactive phosphorus and that of dissolved ammonia were consistently positive (i.e., moving out of the sediment into the water column). The lack of measurable nitrate or nitrite concentration gradients across the sediment-water interface suggested negligible fluxes for dissolved nitrate and nitrite. The dominance of ammonia in the porewater indicated anoxic sediment conditions, even at only 1 cm depth, which is consistent with the observed, elevated sediment oxygen demand. Nearby openestuary sediments showed much lower benthic flux values for nutrients than the salt ponds under resortation. Allochthonous solute transport provides a nutrient advective flux for comparison to benthic flux. For ammonia, averaged for all sites and dates, benthic flux was about 80,000 kg/year, well above the advective flux range of −50 to 1500 kg/year, with much of the variability depending on the tidal cycle. By contrast, the average benthic flux of soluble reactive phosphorus was about 12,000 kg/year, of significant magnitude, but less than the advective flux range of 21,500 to 30,000 kg/year. These benthic flux estimates, based on solute diffusion across the sediment-water interface, reveal a significant nutrient source to the water column of the pond which stimulates algal blooms (often autotrophic). This benthic source may be augmented further by bioturbation, bioirrigation and episodic sediment resuspension events.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFMEP31E..07C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFMEP31E..07C"><span>Dam Breach Release of Non-Cohesive Sediments: Channel Response and Recovery Rates</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Collins, M. J.; Boardman, G.; Banks, W.; Andrews, M.; Conlon, M.; Dillow, J. J. A.; Gellis, A.; Lowe, S.; McClain, S.; Miller, A. J.; Snyder, N. P.; Wilcock, P. R.</p> <p>2014-12-01</p> <p>Dam removals featuring unchecked releases of non-cohesive sediments are excellent opportunities to learn more about stream channel response to abrupt increases in bed material supply that can occur deliberately or by natural processes like landslides and volcanic eruptions. Understanding channel response to sediment pulses, including response rates, is essential because human uses of river channels and floodplains are impacted by these events as are aquatic habitats. We had the opportunity to study a dam removal site at the Simkins Dam in Maryland, USA, that shares many important geophysical attributes of another well-studied dam removal in the humid northeast United States [Merrimack Village Dam, New Hampshire; Pearson et al., 2011]. The watershed sizes are the same order of magnitude (102 km2), and at both sites relatively low head dams were removed (~ 3-4 m) and ~60,000 m3 of dominantly sand-sized sediments discharged to low-gradient reaches immediately downstream. Analyzing four years of repeat morphometry and bed sediment grain size surveys at the Simkins site on the Patapsco River, as well as continuous discharge and suspended sediment gaging data, we clearly document a two-phase response in the upstream reach as described by Pearson et al. [2011] for their New Hampshire site and noted at other dam removals [e.g., Major et al., 2012]. In the early phase, approximately 50% of the impounded sediment mass was eroded rapidly over a period of about three months when flows were very modest (Figure 1). After incision to base level and channel widening in the former impoundment, a second phase began when further erosion depended on floods large enough to access impounded sediments more distant from the newly-formed channel. We also found important differences in the upstream responses at the Maryland and New Hampshire sites that appear to be related to valley type (non-glaciated versus glaciated, respectively). Response variances immediately downstream between the respective sites are potentially related to local gradient and hydraulics.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSMG44B1996D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSMG44B1996D"><span>Extreme Events on a Low-Gradient River and Delta: Evidence for Sediment Mass Movements on the Subaqueous Delta and a Mechanism for Creating Hyperpycnal Flow onto the Shelf</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Dellapenna, T. M.; Carlin, J. A.; Williams, J. R.</p> <p>2016-02-01</p> <p>The Brazos River empties into the Gulf of Mexico (GOM) forming a wave-influenced, muddy, subaqueous delta (SAD). Recent research in the estuarine reach of the river and on the SAD, however, found evidence for significant mass wasting of the delta-front and potential evidence of hyperpycnal flow, a processes typically associated with higher gradient and higher sediment yield rivers. The study used high-resolution geophysics on the SAD and water-column profiling in the lower river to investigate the transfer to and fate of fluvial sediment on the shelf. The SAD side scan mosaic combined with core data reveal that the eastern portion was dominated by exposed relict, consolidated sediment; an erosional scarp along the upper shoreface; and a thinning of the Holocene strata immediately downslope of the scarp. Holocene strata thickness increases into deeper water. These features suggest sediment mass wasting on the delta front. After rapidly prograding during the early and mid 20th century, reductions in sediment load due anthropogenic influences, and a shift in the primary depocenter lead to erosion on these abandoned portions of the delta. During an elevated fluvial discharge event, a >1 m thick fluid mud layer was found along a 6 km span of the river 2 km upstream from the mouth. The river's salt wedge was shown to inhibit sediment export from the river to the GOM, and facilitate deposition of mud in the lower river. We believe that the mud layer in the lower river builds during moderate and low discharge periods and remobilized during increased discharge, potentially resulting in hyperpyncnal flow to the shelf. We observed suspended sediment concentrations up to 100 g/l in the fluid mud layer during this event. While our observations did not capture the transition from fluid mud to hyperpycnal flow, we believe that with persistent increased discharge the fluid mud layer could transition to hyperpycnal flow.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EGUGA..14.1277E','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EGUGA..14.1277E"><span>AVO Analysis of a Shallow Gas Accumulation in the Marmara Sea</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Er, M.; Dondurur, D.; Çifçi, G.</p> <p>2012-04-01</p> <p>In recent years, Amplitude versus Offset-AVO analysis is widely used in determination and classification of gas anomalies from wide-offset seismic data. Bright spots which are among the significant factors in determining the hydrocarbon accumulations, can also be determined sucessfully using AVO analysis. A bright spot anomaly were identified on the multi-channel seismic data collected by R/V K. Piri Reis research vessel in the Marmara Sea in 2008. On prestack seismic data, the associated AVO anomalies are clearly identified on the supergathers. Near- and far-offset stack sections are plotted to show the amplitudes changes at different offsets and the bright amplitudes were observed on the far-offset stack. AVO analysis was applied to the observed bright spot anomaly following the standart data processing steps. The analysis includes the preparation of Intercept, Gradient and Fluid Factor sections of AVO attribues. Top and base boundaries of gas bearing sediment were shown by intercept - gradient crossplot method. 1D modelling was also performed to show AVO classes and models were compared with the analysis results. It is interpreted that the bright spot anomaly arises from a shallow gas accumulation. In addition, the gas saturation from P-wave velocity was also estimated by the analysis. AVO analysis indicated Class 3 and Class 4 AVO anomalies observed on the bright spot anomaly.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011AGUFMEP51A0822M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011AGUFMEP51A0822M"><span>Grain size controls on sediment supply from debris-mantled dryland hillslopes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Michaelides, K.</p> <p>2011-12-01</p> <p>Debris-mantled hillslopes are common in arid and semiarid environments where low rates of chemical weathering give rise to thin, non-cohesive soils mantled with a layer of coarse rock fragments derived from weathered bedrock that can reach boulder size. The grain size distributions (GSDs) on the surface of these hillslopes interact with different magnitudes and frequencies of runoff-producing rainfall events that selectively transport grain sizes of different classes depending on flow, grain position on the slope, and hillslope attributes. Sediment transport over many runoff events determines sediment delivery to the slope base, which ultimately modifies the GSD of valley floors. The relationship between hillslope attributes and sediment flux forms the basis of geomorphic transport laws used to model the topographic evolution of drainage basins over >104 y timescales, but the specific responses of sediment flux across the hillslope and the corresponding changes in GSDs to individual storm events are poorly understood. Sheetwash erosion of coarse fragments presents a particular set of conditions for sediment transport that is poorly resolved in current models. A particle-based model for sheetwash sediment transport on debris-mantled hillslopes was developed within a rainfall-runoff model. The rainfall-runoff model produces spatial values of flow depth and velocity which are used to drive a particle-by-particle force-balance model derived from first principles for grain sizes > 1 mm. Particles on the hillslope surface are represented explicitly and can be composed of mixed grain sizes of any distribution or of uniform sizes of any diameter. The model resolves all the forces on each particle at each time and space step based on the flow hydraulics acting on them, so no assumptions are made about incipient motion using Shield's criterion. This research examines how the interplay between hillslope GSD, hillslope attributes (gradient and length) and runoff characteristics, determine sediment transport dynamics and net flux, GSD supplied to the slope base and the changes in GSD on the hillslope. The results show a strong control of initial hillslope GSD on flux characteristics: (1) GSD controls the degree of non-linearity in the relationship between sediment flux and hillslope gradient. (2) Grain size uniformity controls the degree and form of non-linearity in the relationship between sediment flux and gradient. (3) Over multiple runoff events, slopes coarsen - steeper slopes become coarser than shallow slopes. For individual events, changes in GSD on the slope depend on the magnitude and duration of the runoff event and can result in variable coarsening and fining on different parts of the slope. (4) The GSD of sediment delivered to the slope base is dependent on the hillslope GSD and the hillslope attributes and runoff characteristics. For most runoff events, the GSD of fluxed sediment is finer than the hillslope GSD except for extreme runoff events on very steep slopes with intermediate GSD (not extremely coarse). These findings provide insights into hillslope responses to climatic forcing and have theoretical implications for modeling hillslope evolution in drylands.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017WRR....5310257D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017WRR....5310257D"><span>Monitoring Streambed Scour/Deposition Under Nonideal Temperature Signal and Flood Conditions</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>DeWeese, Timothy; Tonina, Daniele; Luce, Charles</p> <p>2017-12-01</p> <p>Streambed erosion and deposition are fundamental geomorphic processes in riverbeds, and monitoring their evolution is important for ecological system management and in-stream infrastructure stability. Previous research showed proof of concept that analysis of paired temperature signals of stream and pore waters can simultaneously provide monitoring scour and deposition, stream sediment thermal regime, and seepage velocity information. However, it did not address challenges often associated with natural systems, including nonideal temperature variations (low-amplitude, nonsinusoidal signal, and vertical thermal gradients) and natural flooding conditions on monitoring scour and deposition processes over time. Here we addressed this knowledge gap by testing the proposed thermal scour-deposition chain (TSDC) methodology, with laboratory experiments to test the impact of nonideal temperature signals under a range of seepage velocities and with a field application during a pulse flood. Both analyses showed excellent match between surveyed and temperature-derived bed elevation changes even under very low temperature signal amplitudes (less than 1°C), nonideal signal shape (sawtooth shape), and strong and changing vertical thermal gradients (4°C/m). Root-mean-square errors on predicting the change in streambed elevations were comparable with the median grain size of the streambed sediment. Future research should focus on improved techniques for temperature signal phase and amplitude extractions, as well as TSDC applications over long periods spanning entire hydrographs.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li class="active"><span>15</span></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_15 --> <div id="page_16" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li class="active"><span>16</span></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="301"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25979900','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25979900"><span>Diversity of the Sediment Microbial Community in the Aha Watershed (Southwest China) in Response to Acid Mine Drainage Pollution Gradients.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sun, Weimin; Xiao, Tangfu; Sun, Min; Dong, Yiran; Ning, Zengping; Xiao, Enzong; Tang, Song; Li, Jiwei</p> <p>2015-08-01</p> <p>Located in southwest China, the Aha watershed is continually contaminated by acid mine drainage (AMD) produced from upstream abandoned coal mines. The watershed is fed by creeks with elevated concentrations of aqueous Fe (total Fe > 1 g/liter) and SO4 (2-) (>6 g/liter). AMD contamination gradually decreases throughout downstream rivers and reservoirs, creating an AMD pollution gradient which has led to a suite of biogeochemical processes along the watershed. In this study, sediment samples were collected along the AMD pollution sites for geochemical and microbial community analyses. High-throughput sequencing found various bacteria associated with microbial Fe and S cycling within the watershed and AMD-impacted creek. A large proportion of Fe- and S-metabolizing bacteria were detected in this watershed. The dominant Fe- and S-metabolizing bacteria were identified as microorganisms belonging to the genera Metallibacterium, Aciditerrimonas, Halomonas, Shewanella, Ferrovum, Alicyclobacillus, and Syntrophobacter. Among them, Halomonas, Aciditerrimonas, Metallibacterium, and Shewanella have previously only rarely been detected in AMD-contaminated environments. In addition, the microbial community structures changed along the watershed with different magnitudes of AMD pollution. Moreover, the canonical correspondence analysis suggested that temperature, pH, total Fe, sulfate, and redox potentials (Eh) were significant factors that structured the microbial community compositions along the Aha watershed. Copyright © 2015, American Society for Microbiology. All Rights Reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20008373','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20008373"><span>Gravikinesis in Stylonychia mytilus is based on membrane potential changes.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Krause, Martin; Bräucker, Richard; Hemmersbach, Ruth</p> <p>2010-01-01</p> <p>The graviperception of the hypotrichous ciliate Stylonychia mytilus was investigated using electrophysiological methods and behavioural analysis. It is shown that Stylonychia can sense gravity and thereby compensates sedimentation rate by a negative gravikinesis. The graviresponse consists of a velocity-regulating physiological component (negative gravikinesis) and an additional orientational component. The latter is largely based on a physical mechanism but might, in addition, be affected by the frequency of ciliary reversals, which is under physiological control. We show that the external stimulus of gravity is transformed to a physiological signal, activating mechanosensitive calcium and potassium channels. Earlier electrophysiological experiments revealed that these ion channels are distributed in the manner of two opposing gradients over the surface membrane. Here, we show, for the first time, records of gravireceptor potentials in Stylonychia that are presumably based on this two-gradient system of ion channels. The gravireceptor potentials had maximum amplitudes of approximately 4 mV and slow activation characteristics (0.03 mV s(-1)). The presumptive number of involved graviperceptive ion channels was calculated and correlates with the analysis of the locomotive behaviour.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME31A..01D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME31A..01D"><span>Muddy marine sediments are gels</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Dorgan, K. M.; Clemo, W. C.; Barry, M. A.; Johnson, B.</p> <p>2016-02-01</p> <p>Marine sediments cover 70% of the earth's surface, are important sites of carbon burial and nutrient regeneration, and provide habitat for diverse and abundant infaunal communities. The majority of these sediments are muds, in which bioturbation affects sediment structure and geochemical gradients. How infaunal activites result in particle mixing depends on the mechanical properties of muddy sediments. At the scale of burrowing animals, muds are elastic solids. Animals move through these elastic muds by extending crack-shaped burrows by fracture. The underlying mechanism driving this elasticity, however, has not been explicitly illustrated. Here, we test the hypothesis that the elastic behavior of muddy sediments is disrupted by removal of organic material by measuring fracture toughness and stiffness of manipulated and control sediments. Our results indicate that the mechanical responses of sediments to forces are governed by the muco-polymeric matrix of organic material. Similar effects of organic material oxidation were not observed in sands, indicating a clear mechanical distinction between fine- and coarse-grained sediments. Muddy sediments are gels, not fluids or granular materials, and models of how sediments respond to forces imposed by, e.g., organisms, gases, and ambient water should explicitly consider the role of organic material.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP53C1754N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP53C1754N"><span>Transport of sediment through a channel network during a post-fire debris flow</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Nyman, P.; Box, W. A. C.; Langhans, C.; Stout, J. C.; Keesstra, S.; Sheridan, G. J.</p> <p>2017-12-01</p> <p>Transport processes linking sediment in steep headwaters with rivers during high magnitude events are rarely examined in detail, particularly in forested settings where major erosion events are rare and opportunities for collecting data are limited. Yet high magnitude events in headwaters are known to drive landscape change. This study examines how a debris flow after wildfire impacts on sediment transport from small headwaters (0.02 km2) through a step pool stream system within a larger 14 km2 catchment, which drains into the East Ovens River in SE Australia. Sediment delivery from debris flows was modelled and downstream deposition of sediment was measured using a combination of aerial imagery and field surveys. Particle size distributions were measured for all major deposits. These data were summarised to map sediment flux as a continuous variable over the drainage network. Total deposition throughout the stream network was 39 x 103 m3. Catchment efflux was 61 x 103 m3 (specific sediment yield of 78 ton ha-1), which equates to 400-800 years of background erosion, based on measurements in nearby catchments. Despite the low gradient (ca. 0.1 m m-1) of the main channel there was no systematic downstream sorting in sediment deposits in the catchment. This is due to debris flow processes operating throughout the stream network, with lateral inputs sustaining the process in low gradient channels, except in the most downstream reaches where the flow transitioned towards hyper-concentrated flow. Overall, a large proportion ( 88%) of the eroded fine fraction (<63 micron) exited the catchment, when compared to the overall ratio (55%) of erosion to deposition. The geomorphic legacy of this post-wildfire event depends on scale. In the lower channels (steam order 4-5), where erosion was nearly equal to deposition, the event had no real impact on total sediment volumes stored. In upper channels (stream orders < 3) erosion was widespread but deposition rates were low. So debris flows are really effective at removing sediment from headwaters, but at some scale (between 3th and 4th order channels) they are equally effective at depositing sediment. In these lower reaches the geomorphic legacy of the post-wildfire debris flow is about how channel sediment is distributed rather than how much volume is stored.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4300508','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4300508"><span>Hydraulic Experiments for Determination of In-situ Hydraulic Conductivity of Submerged Sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Lee, Bong-Joo; Lee, Ji-Hoon; Yoon, Heesung; Lee, Eunhee</p> <p>2015-01-01</p> <p>A new type of in-situ hydraulic permeameter was developed to determine vertical hydraulic conductivity (VHC) of saturated sediments from hydraulic experiments using Darcy's law. The system allows water to move upward through the porous media filled in the permeameter chamber driven into sediments at water-sediment interface. Darcy flux and hydraulic gradient can be measured using the system, and the VHC can be determined from the relationship between them using Darcy's law. Evaluations in laboratory and in field conditions were performed to see if the proposed permeameter give reliable and valid measures of the VHC even where the vertical flow at water-sediment interface and fluctuation of water stage exist without reducing the accuracy of the derived VHC. Results from the evaluation tests indicate that the permeameter proposed in this study can be used to measure VHC of saturated sandy sediments at water-sediment interface in stream and marine environment with high accuracy. PMID:25604984</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70019757','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70019757"><span>Complex response of a midcontinent north America drainage system to late Wisconsinan sedimentation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Bettis, E. Arthur; Autin, W.J.</p> <p>1997-01-01</p> <p>The geomorphic evolution of Mud Creek basin in eastern Iowa, U.S.A. serves to illustrate how geomorphic influences such as sediment supply, valley gradient, climate, and vegetation are recorded in the alluvial stratigraphic record. Sediment supply to the fluvial system increased significantly during the late Wisconsinan through a combination of periglacial erosion and loess accumulation. Subsequent evolution of the Holocene alluvial stratigraphic record reflects long-term routing of the late Wisconsinan sediment through the drainage basin in a series of cut-and-fill cycles whose timing was influenced by hydrologic response to change in climate and vegetation. When viewed in a regional context, the alluvial stratigraphic record appears to reflect a long-term complex response of the fluvial system to increased sediment supply during the late Wisconsinan. Hydrologic and sediment-supply changes accompanying the spread of Euroamerican agriculture to the basin in the 180Os dramatically upset trends in sedimentation and channel behavior established during the Holocene. Copyright ?? 1997, SEPM (Society for Sedimentary Geology).</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27344087','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27344087"><span>Dynamic characteristics of sulfur, iron and phosphorus in coastal polluted sediments, north China.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sun, Qiyao; Sheng, Yanqing; Yang, Jian; Di Bonito, Marcello; Mortimer, Robert J G</p> <p>2016-12-01</p> <p>The cycling of sulfur (S), iron (Fe) and phosphorus (P) in sediments and pore water can impact the water quality of overlying water. In a heavily polluted river estuary (Yantai, China), vertical profiles of fluxes of dissolved sulfide, Fe 2+ and dissolved reactive phosphorus (DRP) in sediment pore water were investigated by the Diffusive Gradients in Thin films technique (DGT). Vertical fluxes of S, Fe, P in intertidal sediment showed the availability of DRP increased while the sulfide decreased with depth in surface sediment, indicating that sulfide accumulation could enhance P release in anoxic sediment. In sites with contrasting salinity, the relative dominance of iron and sulfate reduction was different, with iron reduction dominant over sulfate reduction in the upper sediment at an intertidal site but the reverse true in a freshwater site, with the other process dominating at depth in each case. Phosphate release was largely controlled by iron reduction. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/55819','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/55819"><span>Influence of declining mean annual rainfall on the behavior and yield of sediment and particulate organic carbon from tropical watersheds</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Ayron M. Strauch; Richard A. MacKenzie; Christian P. Giardina; Gregory L. Bruland</p> <p>2018-01-01</p> <p>The capacity to forecast climate and land-use driven changes to runoff, soil erosion and sediment transport in the tropics is hindered by a lack of long-term data sets and model study systems. To address these issues we utilized three watersheds characterized by similar shape, geology, soils, vegetation cover, and land use arranged across a 900 mm gradient in mean...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70190419','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70190419"><span>Understanding differences between DELFT3D and empirical predictions of alongshore sediment transport gradients</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>List, Jeffrey; Benedet, Lindino; Hanes, Daniel M.; Ruggiero, Peter</p> <p>2009-01-01</p> <p>Predictions of alongshore transport gradients are critical for forecasting shoreline change. At the previous ICCE conference, it was demonstrated that alongshore transport gradients predicted by the empirical CERC equation can differ substantially from predictions made by the hydrodynamics-based model Delft3D in the case of a simulated borrow pit on the shoreface. Here we use the Delft3D momentum balance to examine the reason for this difference. Alongshore advective flow accelerations in our Delft3D simulation are mainly driven by pressure gradients resulting from alongshore variations in wave height and setup, and Delft3D transport gradients are controlled by these flow accelerations. The CERC equation does not take this process into account, and for this reason a second empirical transport term is sometimes added when alongshore gradients in wave height are thought to be significant. However, our test case indicates that this second term does not properly predict alongshore transport gradients.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1995WRR....31.1421K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1995WRR....31.1421K"><span>A Semianalytical Analysis of Compressible Electrophoretic Cake Formation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kambham, Kiran K. R.; Tuncay, Kagan; Corapcioglu, M. Yavuz</p> <p>1995-05-01</p> <p>Leaks in geomembrane liners of waste landfills and liquid impoundments cause chemical contaminants to leak into the subsurface environment. A mathematical model is presented to simulate electrophoretic sealing of impoundment leaks. The model describes the formation of a compressible clay cake because of electrical and gravitational forces. The model includes mass balance equations for the solid particles and liquid phase, modified Darcy's law in an electrical field, and Terzaghi's definition of effective stress. The formulation is presented in the Eulerian coordinates. The resulting second-order, nonlinear partial differential equation and the lower boundary condition are linearized to obtain an analytical solution for time-dependent settlement. After discretizing in time the analytical solution is applied to simulate compression of an accreting sediment. In the simulation of an accreting sediment, solid fluxes on either side of suspension/sediment interface are coupled using a no-jump condition. The velocity of a discrete particle in the suspension zone is assumed to be equal to the algebraic sum of electrophoretic and Stoke's settling velocities. An empirical relationship available in the literature is used to account for the effect of concentration on the velocity of solid particles in the suspension zone. The validity of the semianalytical approach is partially verified using an exact steady state solution for self-weight consolidation. The simulation results obtained for a set of material parameters are presented graphically. It is noted that the electrokinetic consolidation of sediment continues even after the completion of electrophoretic settling of all clay particles. An analysis reveals that the electrophoretic cake formation process is quite sensitive to voltage gradient and the coefficient of compressibility.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1993NJSR...31...63A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1993NJSR...31...63A"><span>Path analyses of the influence of substrate composition on nematode numbers and on decomposition of stranded seaweed at an Antarctic coast</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Alkemade, R.; Van Rijswijk, P.</p> <p></p> <p>Large amounts of seaweed are deposited along the coast of Admiralty Bay, King George Island, Antarctica. The stranded seaweed partly decomposes on the beach and supports populations of meiofauna species, mostly nematodes. The factors determining the number of nematodes found in the seaweed packages were studied. Seaweed/sediment samples were collected from different locations, along the coast near Arctowski station, covering gradients of salinity, elevation and proximity of Penguin rookeries. On the same locations decomposition rate was determined by means of permeable containers with seaweed material. Models, including the relations between location, seaweed and sediment characteristics, number of nematodes and decomposition rates, were postulated and verified using path analysis. The most plausible and significant models are presented. The number of nematodes was directly correlated with the height of the location, the carbon-to-nitrogen ratio, and the salinity of the sample. Nematode numbers were apparently indirectly dependent on sediment composition and water content. We hypothesize that the different influences of melt water and tidal water, which affect both salinity and water content of the deposits, are important phenomena underlying these results. Analysis of the relation between decomposition rate and abiotic, location-related characteristics showed that decomposition rate was dependent on the water content of the stranded seaweed and sediment composition. Decomposition rates were high on locations where water content of the deposits was high. There the running water from melt water run-off or from the surf probably increased weight losses of seaweed.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29433101','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29433101"><span>Polychlorinated biphenyl (PCB) contamination in Galveston Bay, Texas: Comparing concentrations and profiles in sediments, passive samplers, and fish.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Oziolor, Elias M; Apell, Jennifer N; Winfield, Zach C; Back, Jeffrey A; Usenko, Sascha; Matson, Cole W</p> <p>2018-05-01</p> <p>The industrialized portion of the Houston Ship Channel (HSC) is heavily contaminated with anthropogenic contaminants, most prominent of which are the polychlorinated biphenyls (PCBs). This contamination has driven adaptive evolution in a keystone species for Galveston Bay, the Gulf killifish (Fundulus grandis). We investigated the geographical extent of PCB impacts by sampling 12 sites, ranging from the heavily industrialized upper portion of the HSC to Galveston Island. At each site, PCB concentrations and profiles were determined in three environmental compartments: sediment, water (polyethylene passive samplers), and fish tissue (resident Gulf killifish). We observed a steep gradient of PCB contamination, ranging from 4.00 to 100,000 ng/g organic carbon in sediment, 290-110,000 ng/g lipid in fish, and 4.5-2300 ng/g polyethylene in passive samplers. The PCB congener profiles in Gulf killifish at the most heavily contaminated sites were shifted toward the higher chlorinated PCBs and were highly similar to the sediment contamination profiles. In addition, while magnitude of total PCB concentrations in sediment and total fish contamination levels were highly correlated between sites, the relative PCB congener profiles in fish and passive samplers were more alike. This strong correlation, along with a lack of dependency of biota-sediment accumulation factors with total contamination rates, confirm the likely non-migratory nature of Gulf killifish and suggest their contamination levels are a good site-specific indicator of contamination in the Galveston Bay area. The spatial gradient of PCB contamination in Galveston Bay was evident in all three matrices studied and was observed effectively using Gulf killifish contamination as an environmentally relevant bioindicator of localized contamination in this environment. Copyright © 2018 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018BGeo...15.3293P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018BGeo...15.3293P"><span>Interannual sedimentary effluxes of alkalinity in the southern North Sea: model results compared with summer observations</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Pätsch, Johannes; Kühn, Wilfried; Dorothea Six, Katharina</p> <p>2018-06-01</p> <p>For the sediments of the central and southern North Sea different sources of alkalinity generation are quantified by a regional modelling system for the period 2000-2014. For this purpose a formerly global ocean sediment model coupled with a pelagic ecosystem model is adapted to shelf sea dynamics, where much larger turnover rates than in the open and deep ocean occur. To track alkalinity changes due to different nitrogen-related processes, the open ocean sediment model was extended by the state variables particulate organic nitrogen (PON) and ammonium. Directly measured alkalinity fluxes and those derived from Ra isotope flux observation from the sediment into the pelagic are reproduced by the model system, but calcite building and calcite dissolution are underestimated. Both fluxes cancel out in terms of alkalinity generation and consumption. Other simulated processes altering alkalinity in the sediment, like net sulfate reduction, denitrification, nitrification, and aerobic degradation, are quantified and compare well with corresponding fluxes derived from observations. Most of these fluxes exhibit a strong positive gradient from the open North Sea to the coast, where large rivers drain nutrients and organic matter. Atmospheric nitrogen deposition also shows a positive gradient from the open sea towards land and supports alkalinity generation in the sediments. An additional source of spatial variability is introduced by the use of a 3-D heterogenous porosity field. Due to realistic porosity variations (0.3-0.5) the alkalinity fluxes vary by about 4 %. The strongest impact on interannual variations of alkalinity fluxes is exhibited by the temporal varying nitrogen inputs from large rivers directly governing the nitrate concentrations in the coastal bottom water, thus providing nitrate necessary for benthic denitrification. Over the time investigated the alkalinity effluxes decrease due to the decrease in the nitrogen supply by the rivers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70019708','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70019708"><span>Slope basins, headless canyons, and submarine palaeoseismology of the Cascadia accretionary complex</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>McAdoo, B.G.; Orange, D.L.; Screaton, Elizabeth; Lee, H.; Kayen, R.</p> <p>1997-01-01</p> <p>A combination of geomorphological, seismic reflection and geotechnical data constrains this study of sediment erosion and deposition at the toe of the Cascadia accretionary prism. We conducted a series of ALVIN dives in a region south of Astoria Canyon to examine the interrelationship of fluid flow and slope failure in a series of headless submarine canyons. Elevated head gradients at the inflection point of canyons have been inferred to assist in localized failures that feed sediment into a closed slope basin. Measured head gradients are an order of magnitude too low to cause seepage-induced slope failure alone; we therefore propose transient slope failure mechanisms. Intercanyon slopes are uniformly unscarred and smooth, although consolidation tests indicate that up to several metres of material may have been removed. A sheet-like failure would remove sediment uniformly, preserving the observed smooth intercanyon slope. Earthquake-induced liquefaction is a likely trigger for this type of sheet failure as the slope is too steep and short for sediment flow to organize itself into channels. Bathymetric and seismic reflection data suggest sediment in a trench slope basin between the second and third ridges from the prism's deformation is derived locally. A comparison of the amounts of material removed from the slopes and that in the basin shows that the amount of material removed from the slopes may slightly exceed the amount of material in the basin, implying that a small amount of sediment has escaped the basin, perhaps when the second ridge was too low to form a sufficient dam, or through a gap in the second ridge to the south. Regardless, almost 80% of the material shed off the slopes around the basin is deposited locally, whereas the remaining 20% is redeposited on the incoming section and will be re-accreted.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014DSRII.110...13D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014DSRII.110...13D"><span>Alterations in bottom sediment physical and chemical characteristics at the Terra Nova offshore oil development over ten years of drilling on the grand banks of Newfoundland, Canada</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>DeBlois, Elisabeth M.; Paine, Michael D.; Kilgour, Bruce W.; Tracy, Ellen; Crowley, Roger D.; Williams, Urban P.; Janes, G. Gregory</p> <p>2014-12-01</p> <p>This paper describes sediment composition at the Terra Nova offshore oil development. The Terra Nova Field is located on the Grand Banks approximately 350 km southeast of Newfoundland, Canada, at an approximate water depth of 100 m. Surface sediment samples (upper 3 cm) were collected for chemical and particle size analyses at the site pre-development (1997) and in 2000-2002, 2004, 2006, 2008 and 2010. Approximately 50 stations have been sampled in each program year, with stations extending from less than 1 km to a maximum of 20 km from source (drill centres) along five gradients, extending to the southeast, southwest, northeast, northwest and east of Terra Nova. Results show that Terra Nova sediments were contaminated with >C10-C21 hydrocarbons and barium-the two main constituents of synthetic-based drilling muds used at the site. Highest levels of contamination occurred within 1 to 2 km from source, consistent with predictions from drill cuttings dispersion modelling. The strength of distance gradients for >C10-C21 hydrocarbons and barium, and overall levels, generally increased as drilling progressed but decreased from 2006 to 2010, coincident with a reduction in drilling. As seen at other offshore oil development sites, metals other than barium, sulphur and sulphide levels were elevated and sediment fines content was higher in the immediate vicinity (less than 0.5 km) of drill centres in some sampling years; but there was no strong evidence of project-related alterations of these variables. Overall, sediment contamination at Terra Nova was spatially limited and only the two major constituents of synthetic-based drilling muds used at the site, >C10-C21 hydrocarbons and barium, showed clear evidence of project-related alternations.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018JSAES..84..399A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018JSAES..84..399A"><span>Sedimentary facies analysis of the Mesozoic clastic rocks in Southern Peru (Tacna, 18°S): Towards a paleoenvironmental Redefinition and stratigraphic Reorganization</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Alván, Aldo; Jacay, Javier; Caracciolo, Luca; Sánchez, Elvis; Trinidad, Inés</p> <p>2018-07-01</p> <p>The Mesozoic rocks of southern Peru comprise a Middle Jurassic to Early Cretaceous sedimentary sequence deposited during a time interval of approximately 34 Myr. In Tacna, these rocks are detrital and constitute the Yura Group (Callovian to Tithonian) and the Hualhuani Formation (Berriasian). Basing on robust interpretation of facies and petrographic analysis, we reconstruct the depositional settings of such units and provide a refined stratigraphic framework. Accordingly, nine types of sedimentary facies and six architectural elements are defined. They preserve the record of a progradational fluvial system, in which two styless regulated the dispersion of sediments: (i) a high-to moderate-sinuosity meandering setting (Yura Group), and a later (ii) incipient braided setting (Hualhuani Formation). The Yura Group (Callovian-Tithonian) represents the onset of floodplain deposits and lateral accretion of point-bar deposits sited on a semi-flat topography. Nonetheless, the progradational sequence was affected by at least two rapid marine ingressions occurred during Middle Callovian and Tithonian times. Such marine ingressions reveal the proximity of a shallow marine setting and incipient carbonate deposition. In response to increase in topographic gradient, the Hualhuani Formation (Berriasian) deposited as extensive multistory sandy channels. The mineralogy of the Mesozoic sediments suggests sediment supplies and intense recycling from a craton interior (i.e. Amazon Craton and/or plutonic sources) located eastward of the study area.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018JPhCS1015c2100N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018JPhCS1015c2100N"><span>Mathematical modelling for distribution of heavy metals in estuary area of Red River (Vietnam)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Nguyen, N. T. T.; Volkova, I. V.</p> <p>2018-05-01</p> <p>In this paper, the authors studied the features of spatial distribution of some heavy metals (Pb, Hg, As) in the system “suspended substance - bottom sediments” in the mouth area of the Red River (Vietnam). A mathematical modelling for diffusion processes of heavy metals in a suspended form, in bottom sediments and the spatial analysis for the results of these models were proposed and implemented. The studies were carried out during main hydrological seasons of 2014 - 2016 (during the flood and inter-natal periods). The propagation of heavy metals was modeled by solving the equation of turbulent diffusion. A spatial analysis of the content of heavy metals in the suspended form and in the bottom sediments was implemented by using the interpolation model in ArcGIS 10.2.2. The distribution of Pb, Hg, As concentration of the suspended form and bottom sediment phases in the estuary area of the Red River was characterized by maximum in the mouths of the branches and general decreasing gradient towards the sea. Maximum concentrations of Pb, Hg in suspended forms were observed in the surface layer of water at the river-sea barrier. The content of Hg and As in the estuary region of the Red River was observed in the following order: SSsurf< SSbott< BS; and content of Pb – SS >BS.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/sir/2013/5116/pdf/sir2013-5116.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/sir/2013/5116/pdf/sir2013-5116.pdf"><span>Sediment distribution and hydrologic conditions of the Potomac aquifer in Virginia and parts of Maryland and North Carolina</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>McFarland, Randolph E.</p> <p>2013-01-01</p> <p>Sediments of the heavily used Potomac aquifer broadly contrast across major structural features of the Atlantic Coastal Plain Physiographic Province in eastern Virginia and adjacent parts of Maryland and North Carolina. Thicknesses and relative dominance of the highly interbedded fluvial sediments vary regionally. Vertical intervals in boreholes of coarse-grained sediment commonly targeted for completion of water-supply wells are thickest and most widespread across the central and southern parts of the Virginia Coastal Plain. Designated as the Norfolk arch depositional subarea, the entire sediment thickness here functions hydraulically as a single interconnected aquifer. By contrast, coarse-grained sediment intervals are thinner and less widespread across the northern part of the Virginia Coastal Plain and into southern Maryland, designated as the Salisbury embayment depositional subarea. Fine-grained intervals that are generally avoided for completion of water-supply wells are increasingly thick and widespread northward. Fine-grained intervals collectively as thick as several hundred feet comprise two continuous confining units that hydraulically separate three vertically spaced subaquifers. The subaquifers are continuous northward but merge southward into the single undivided Potomac aquifer. Lastly, far southeastern Virginia and northeastern North Carolina are designated as the Albemarle embayment depositional subarea, where both coarse- and fine-grained intervals are of only moderate thickness. The entire sediment thickness functions hydraulically as a single interconnected aquifer. A substantial hydrologic separation from overlying aquifers is imposed by the upper Cenomanian confining unit. Potomac aquifer sediments were deposited by a fluvial depositional complex spanning the Virginia Coastal Plain approximately 100 to 145 million years ago. Westward, persistently uplifted granite and gneiss source rocks sustained a supply of coarse-grained sand and gravel. Immature, high-gradient braided streams deposited longitudinal bars and channel fills across the Norfolk arch subarea. By contrast, across the Salisbury and Albemarle embayment subareas, mature, medium- to low-gradient meandering streams deposited medium- to coarse-grained channel fills and point bars segregated from fine-grained overbank deposits. The Virginia depositional complex merged northward across the Salisbury embayment subarea with another complex in Maryland. Here, additional sediments were received from schist source rocks that underwent three cycles of initial uplift and rapid erosion followed by crustal stability and erosional leveling. Because of the predominance of coarse-grained sediments, transmissivity, hydraulic conductivity, and regional velocities of lateral flow through the Potomac aquifer are greatest across the Norfolk arch depositional subarea, but decrease progressively northward with increasingly fine-grained sediments. Confining units hydraulically separate the Potomac aquifer from overlying aquifers, as indicated by large vertical hydraulic gradients. By contrast, most of the Potomac aquifer internally functions hydraulically as a single interconnected aquifer, as indicated by uniformly small vertical gradients. Most fine-grained sediments within the aquifer do not hydraulically separate overlying and underlying coarse-grained sediments. Across the Salisbury embayment depositional subarea, however, hydraulic separation among the vertically spaced subaquifers is imposed by the intervening confining units. The Potomac aquifer is the largest and most heavily used source of groundwater in the Virginia Coastal Plain. Water-level declines as great as 200 feet create the potential for saltwater intrusion. Conventional stratigraphic correlation has been generally ineffective at accurately characterizing complexly distributed fluvial sediments that compose the Potomac aquifer. Consequently, the aquifer’s internal hydraulic connectivity and overall hydrologic function have not been well understood. Water-supply planning and development efforts have been hampered, and interpretations of regulatory criteria for allowable water-level declines have been ambiguous. An investigation undertaken during 2010–11 by the U.S. Geological Survey, in cooperation with the Virginia Department of Environmental Quality, provides a comprehensive regional description of the spatial distribution of Potomac aquifer sediments and their relation to hydrologic conditions. Altitudes and thicknesses of 2,725 vertical sediment intervals represent the spatial distribution of Potomac aquifer sediments in the Virginia Coastal Plain and adjacent parts of Maryland and North Carolina. Sediment intervals are designated as either dominantly coarse or fine grained and were determined by interpretation of geophysical logs and ancillary information from 456 boreholes. Sediment-interval and borehole summary statistical data indicate regional trends in sediment lithology and stratigraphic continuity, upon which three structurally based and hydrologically distinct sediment depositional subareas are designated. Broad patterns of sediment deposition over time are inferred from published sediment pollen-age data. Discrepancies in previously drawn hydrostratigraphic relations between southeastern Virginia and northeastern North Carolina are partly resolved based on borehole geophysical logs and a recently documented geologic map and corehole. A conceptual model theorizes the depositional history of the sediments and geologically accounts for their distribution. Documented pumping tests of the Potomac aquifer at 197 locations produced 336 values of transmissivity and 127 values of storativity. Based on effective aquifer thicknesses, 296 values of sediment hydraulic conductivity and 113 values of sediment specific storage are calculated. Vertical hydraulic gradients are calculated from 9,479 pairs of water levels measured between November 17, 1953, and October 4, 2011, in 129 closely spaced pairs of wells. Borehole sediment-interval and related data provide a means to achieve high yielding production wells in the Potomac aquifer by site-specific targeting of drilling operations toward water-bearing coarse-grained sand and gravel. Advance knowledge of the potential of different parts of the aquifer also aids in planning optimal groundwater-development areas. Depositional subareas further provide a possible context for resource management. Current (2013) regulatory limits on water-level declines are relative to top surfaces of subdivided upper, middle, and lower Potomac aquifers across the entire Virginia Coastal Plain, but have the potential to exceed the same limit relative to a single undivided Potomac aquifer. By contrast, designation of the sediments as a single aquifer in the Norfolk arch and Albemarle embayment subareas—and as a series of vertically spaced subaquifers and intervening confining units in the Salisbury embayment subarea—best reflects understanding of the Potomac aquifer and can avoid the potential for excessive water-level declines. Simulation modeling to evaluate effects of groundwater withdrawals could be designed similarly, including vertical discretization and (or) zonation of the Potomac aquifer based on depositional subareas and a geostatistical distribution of aquifer properties derived from borehole sediment-interval data. Further resource-management information needs extend beyond the developed part of the Potomac aquifer, particularly across the Northern Neck and Middle Peninsula where only the shallowest part of the aquifer is known, and include structural aspects such as faults, basement bedrock, and the Chesapeake Bay impact crater.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010AGUFMEP51C0559D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010AGUFMEP51C0559D"><span>Stability of River Bifurcations from Bedload to Suspended Load Dominated Conditions</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>de Haas, T.; Kleinhans, M. G.</p> <p>2010-12-01</p> <p>Bifurcations (also called diffluences) are as common as confluences in braided and anabranched rivers, and more common than confluences on alluvial fans and deltas where the network is essentially distributary. River bifurcations control the partitioning of both water and sediment through these systems with consequences for immediate river and coastal management and long-term evolution. Their stability is poorly understood and seems to differ between braided rivers, meandering river plains and deltas. In particular, it is the question to what extent the division of flow is asymmetrical in stable condition, where highly asymmetrical refers to channel closure and avulsion. Recent work showed that bifurcations in gravel bed braided rivers become more symmetrical with increasing sediment mobility, whereas bifurcations in a lowland sand delta become more asymmetrical with increasing sediment mobility. This difference is not understood and our objective is to resolve this issue. We use a one-dimensional network model with Y-shaped bifurcations to explore the parameter space from low to high sediment mobility. The model solves gradually varied flow, bedload transport and morphological change in a straightforward manner. Sediment is divided at the bifurcation including the transverse slope effect and the spiral flow effect caused by bends at the bifurcation. Width is evolved whilst conserving mass of eroded or built banks with the bed balance. The bifurcations are perturbed from perfect symmetry either by a subtle gradient advantage for one branch or a gentle bend at the bifurcation. Sediment transport was calculated with and without a critical threshold for sediment motion. Sediment mobility, determined in the upstream channel, was varied in three different ways to isolate the causal factor: by increasing discharge, increasing channel gradient and decreasing particle size. In reality the sediment mobility is mostly determined by particle size: gravel bed rivers are near the threshold for sediment motion whereas sand bed rivers have highly mobile sediment at channel-forming conditions. For sediment transport without a critical threshold for motion, bifurcations become more asymmetrical with increasing sediment mobility. In contrast, sediment transport prediction including the threshold for motion leads to highly asymmetrical bifurcations for low sediment mobility, more symmetrical bifurcations for higher mobility and again decreasing symmetry for higher mobility where results of transport with and without the threshold converge. Thus, the general trend is more asymmetrical bifurcations for higher sediment mobility, but the presence of the threshold for motion leads to an optimum in symmetry. Results were similar for the different options used to vary mobility, excluding first-order effects of backwater adaptation length and hydraulic roughness. We conclude that the seemingly conflicting results between gravel-bed and sand-bed rivers in literature are well explained by the difference in sediment mobility.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70003669','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70003669"><span>Sources of mercury to San Francisco Bay surface sediment as revealed by mercury stable isotopes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Gehrke, Gretchen E.; Blum, Joel D.; Marvin-DePasquale, Mark</p> <p>2011-01-01</p> <p>Mercury (Hg) concentrations and isotopic compositions were examined in shallow-water surface sediment (0–2 cm) from San Francisco (SF) Bay to determine the extent to which historic Hg mining contributes to current Hg contamination in SF Bay, and to assess the use of Hg isotopes to trace sources of contamination in estuaries. Inter-tidal and wetland sediment had total Hg (HgT) concentrations ranging from 161 to 1529 ng/g with no simple gradients of spatial variation. In contrast, inter-tidal and wetland sediment displayed a geographic gradient of δ202Hg values, ranging from -0.30% in the southern-most part of SF Bay (draining the New Almaden Hg District) to -0.99% in the northern-most part of SF Bay near the Sacramento–San Joaquin River Delta. Similar to SF Bay inter-tidal sediment, surface sediment from the Alviso Slough channel draining into South SF Bay had a δ202Hg value of -0.29%, while surface sediment from the Cosumnes River and Sacramento–San Joaquin River Delta draining into north SF Bay had lower average δ202Hg values of -0.90% and -0.75%, respectively. This isotopic trend suggests that Hg-contaminated sediment from the New Almaden Hg District mixes with Hg-contaminated sediment from a low δ202Hg source north of SF Bay. Tailings and thermally decomposed ore (calcine) from the New Idria Hg mine in the California Coast Range had average δ202Hg values of -0.37 and +0.03%, respectively, showing that Hg calcination fractionates Hg isotopes resulting in Hg contamination from Hg(II) mine waste products with higher δ202Hg values than metallic Hg(0) produced from Hg mines. Thus, there is evidence for at least two distinct isotopic signals for Hg contamination in SF Bay: Hg associated with calcine waste materials at Hg mines in the Coast Range, such as New Almaden and New Idria; and Hg(0) produced from these mines and used in placer gold mines and/or in other industrial processes in the Sierra Nevada region and SF Bay area.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li class="active"><span>16</span></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_16 --> <div id="page_17" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li class="active"><span>17</span></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="321"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFM.B24A..07H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFM.B24A..07H"><span>Mercury Cycling in Sediments of the Northeast Pacific Continental Margin Between Southern California and Central Oregon, USA</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Heim, W. A.; Coale, K. H.; Chiswell, H.; Olson, A.; Martenuk, S.; Bonnema, A.; Weiss-Penzias, P. S.</p> <p>2017-12-01</p> <p>Monomethylmercury (MMHg) production by anaerobic bacteria in sediments is considered to be a dominate source of MMHg to sediments and overlying surface water in the coastal environment. In this study, we measured total mercury (Hgt) and MMHg sediment and pore water concentrations and calculated diffusive sediment water exchange fluxes in samples collected on the coastal shelf in the California Current System. Sediment cores and overlying water were collected from 20 stations using a slow-entry multi-corer deployed during 4 oceanographic cruises over two years. The upper few centimeters of undisturbed cores were sectioned at the following depth increments: 0.5, 1, 1.5, 2, 3, 4, 5 cm. Pore waters were extracted via centrifugation and the Hgt and MMHg gradients were used to calculate fluxes into the overlying water column based upon molecular diffusion alone. Sediment concentrations for Hgt and MMHg ranged from 50 to 2338 pmoles g-1 and 0.1 to 9 pmoles g-1 respectively. Pore water and overlying water MMHg concentrations ranged from 0.1 to 2.2 pM and 0.03 to 0.3 pM respectively. Diffusional Hgt and MMHg sediment water fluxes ranged from 1.4 to 7.3 pmoles m-2 d-1 and -0.03 to 1.7 pmoles m-2 d-1 respectively. While the gradients in MMHg showed significant and widespread flux that would indicate an input into the waters of the shelf these fluxes were insufficient to sustain elevated concentrations at the sediment boundary layer, or at the depth of the shelf in general. Measurements made on the northwestern Atlantic shelf are in general an order of magnitude greater than those observed here. We suggest that the narrow eastern shelf of the California Current with little allochthonous inputs contrasts sharply with the broad shelf of the Eastern Seaboard with significant organic carbon, riverine and anthropogenic inputs. In general, the narrow shelf of the California Current seems to reflect the pelagic processes of the off shore regions for this element where water column production predominates the formation of the methylated forms.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21895908','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21895908"><span>Microbial diversity and stratification of South Pacific abyssal marine sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Durbin, Alan M; Teske, Andreas</p> <p>2011-12-01</p> <p>Abyssal marine sediments cover a large proportion of the ocean floor, but linkages between their microbial community structure and redox stratification have remained poorly constrained. This study compares the downcore gradients in microbial community composition to porewater oxygen and nitrate concentration profiles in an abyssal marine sediment column in the South Pacific Ocean. Archaeal 16S rRNA clone libraries showed a stratified archaeal community that changed from Marine Group I Archaea in the aerobic and nitrate-reducing upper sediment column towards deeply branching, uncultured crenarchaeotal and euryarchaeotal lineages in nitrate-depleted, anaerobic sediment horizons. Bacterial 16S rRNA clone libraries revealed a similar shift on the phylum and subphylum level within the bacteria, from a complex community of Alpha-, Gamma- and Deltaproteobacteria, Actinobacteria and Gemmatimonadetes in oxic surface sediments towards uncultured Chloroflexi and Planctomycetes in the anaerobic sediment column. The distinct stratification of largely uncultured bacterial and archaeal groups within the oxic and nitrate-reducing marine sediment column provides initial constraints for their microbial habitat preferences. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26126652','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26126652"><span>Assembly of multiple cell gradients directed by three-dimensional microfluidic channels.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Li, Yiwei; Feng, Xiaojun; Wang, Yachao; Du, Wei; Chen, Peng; Liu, Chao; Liu, Bi-Feng</p> <p>2015-08-07</p> <p>Active control over the cell gradient is essential for understanding biological systems and the reconstitution of the functionality of many types of tissues, particularly for organ-on-a-chip. Here, we propose a three-dimensional (3D) microfluidic strategy for generating controllable cell gradients. In this approach, a homogeneous cell suspension is loaded into a 3D stair-shaped PDMS microchannel to generate a cell gradient within 10 min by sedimentation. We demonstrate that cell gradients of various profiles (exponential and piecewise linear) can be achieved by precisely controlling the height of each layer during the fabrication. With sequential seeding, we further demonstrate the generation of two overlapping cell gradients on the same glass substrate with pre-defined designs. The cell gradient-based QD cytotoxicity assay also demonstrated that cell behaviors and resistances were regulated by the changes in cell density. These results reveal that the proposed 3D microfluidic strategy provides a simple and versatile means for establishing controllable gradients in cell density, opening up a new avenue for reconstructing functional tissues.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFMEP33C1085J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFMEP33C1085J"><span>Flashy Water and Sediment Delivery to Fluvial Megafan andFan Delta Systems on Opposing Shorelines of an Early Eocene Lake</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Jones, E. R.; Plink-Bjorklund, P.</p> <p>2015-12-01</p> <p>Flashy delivery of water and sediment had distinct effects on the process of deposition in coeval fluvial megafan and fan delta deposits on opposing shorelines of a paleolake that occupied the Uinta Basin throughout the Eocene. The Tertiary Uinta Basin was an asymmetric continental interior basin with a steep northern margin, adjacent to the block uplift controlling basin subsidence, and a low gradient southern margin. A ~140 km wide fluvial megafan with catchments as far as ~750 km away occupied the southern margin of the lacustrine basin. Within this megafan system, fluvial deposits contain within-channel continental bioturbation and paleosol development on bar accretion surfaces that are evidence of prolonged periods of groundwater flow or channel abandonment. These are punctuated by channel fills exhibiting a suite of both high-deposition rate and upper flow regime sedimentary structures that were deposited by very rapid suspension-fallout during seasonal to episodic river flooding events. A series of small (~8 km wide) and proximally sourced fan deltas fed sediment into the steeper northern margin of the lacustrine basin. 35-50% of the deposits in the delta plain environment of these fan deltas are very sandy debris flows with as low as 5% clay and silt sized material. Detrital zircon geochronology shows that these fan deltas were tapping catchments where mostly unconsolidated Cretaceous sedimentary cover and thick Jurassic eolianites were being eroded. A combination of flashy precipitation, arid climate, catchments mantled by abundant loose sand-sized colluvium, and steep depositional gradients promoted generation of abundant very sandy (5-10% clay and silt sized material) debris flows. In this way, the Wasatch and Green River Formations in the Uinta Basin, Utah, U.S.A. gives us two very different examples of how routing flashy water and sediment delivery (associated with pulses of hyperthermal climate change during the Early Eocene) through different depositional systems produced unique processes of deposition, and also gives us an opportunity to isolate the effects of other variables (e.g. sediment caliber, system gradient, catchment size) that can modulate the flashy precipitation signal in stratigraphy.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28825127','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28825127"><span>Diversity and Distribution Characteristics of Viruses in Soils of a Marine-Terrestrial Ecotone in East China.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yu, Dan-Ting; Han, Li-Li; Zhang, Li-Mei; He, Ji-Zheng</p> <p>2018-02-01</p> <p>A substantial gap remains in our understanding of the abundance, diversity, and ecology of viruses in soil although some advances have been achieved in recent years. In this study, four soil samples according to the salinity gradient from shore to inland in East China have been characterized. Results showed that spherical virus particles represented the largest viral component in all of the four samples. The viromes had remarkably different taxonomic compositions, and most of the sequences were derived from single-stranded DNA viruses, especially from families Microviridae and Circoviridae. Compared with viromes from other aquatic and sediment samples, the community compositions of our four soil viromes resembled each other, meanwhile coastal sample virome closely congregated with sediment and hypersaline viromes, and high salinity paddy soil sample virome was similar with surface sediment virome. Phylogenetic analysis of functional genes showed that four viromes have high diversity of the subfamily Gokushovirinae in family Microviridae and most of Circoviridae replicase protein sequences grouped within the CRESS-DNA viruses. This work provided an initial outline of the viral communities in marine-terrestrial ecotone and will improve our understanding of the ecological functions of soil viruses.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1987DSRA...34.1007D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1987DSRA...34.1007D"><span>Verification of flux measurements made with in situ benthic chambers</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Devol, Allan H.</p> <p>1987-06-01</p> <p>Exchange of solutes between the sediments and overlying water was measured in situ at two locations where the overlying waters were devoid of dissolved oxygen (Skan Bay, Alaska and the Tres Marias depression on the Mexican continental shelf). Measurements were made with a tripod capable of collecting eight sequential samples for analysis of dissolved gases and ions. The tripod also permitted tracer injection and the retrieval of sediments underlying the flux chambers. Because of the absence of oxygen, sediments from these areas did not contain benthic faunal populations, and it was possible to compare the benthic fluxes measured with the tripod with those calculated from pore water profiles. For solutes for which exchange was not limited by resistance in the diffuse sublayer (alkalinity, Si(OH) 4+, NH 4+, and PO 43-), tje 11 tirpod-measured fluxes agreed with those calculated from pore water gradients to within 25%. Benthic boundary layer thickness within the chambers as calculated from the initial rate of radiotracer uptake (tritiated water) varied from 405 to 605 μm in stirred chambers. Measured rates of NO 3- uptake were concordant with a boundary layer thickness of 600 μm.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFM.B11I0562B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFM.B11I0562B"><span>Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.</p> <p>2015-12-01</p> <p>IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are known thermophiles. Up until now, thermophiles and hyperthermophiles have been studied in cultured hydrothermal vent fluid samples, or have been identified from 16S rRNA taxonomic analyses. These recovered genes provide direct evidence for a pervasive subsurface hyperthermophilic biosphere in off-axis hydrothermal sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/sir/2016/5174/sir20165174.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/sir/2016/5174/sir20165174.pdf"><span>Suspended-sediment concentrations, bedload, particle sizes, surrogate measurements, and annual sediment loads for selected sites in the lower Minnesota River Basin, water years 2011 through 2016</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Groten, Joel T.; Ellison, Christopher A.; Hendrickson, Jon S.</p> <p>2016-12-20</p> <p>Accurate measurements of fluvial sediment are important for assessing stream ecological health, calculating flood levels, computing sediment budgets, and managing and protecting water resources. Sediment-enriched rivers in Minnesota are a concern among Federal, State, and local governments because turbidity and sediment-laden waters are the leading impairments and affect more than 6,000 miles of rivers in Minnesota. The suspended sediment in the lower Minnesota River is deleterious, contributing about 75 to 90 percent of the suspended sediment being deposited into Lake Pepin. The Saint Paul District of the U.S. Army Corps of Engineers and the Lower Minnesota River Watershed District collaborate to maintain a navigation channel on the lower 14.7 miles of the Minnesota River through scheduled dredging operations. The Minnesota Pollution Control Agency has adopted a sediment-reduction strategy to reduce sediment in the Minnesota River by 90 percent by 2040.The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, the Minnesota Pollution Control Agency, and the Lower Minnesota River Watershed District, collected suspended-sediment, bedload, and particle-size samples at five sites in the lower Minnesota River Basin during water years 2011 through 2014 and surrogate measurements of acoustic backscatter at one of these sites on the lower Minnesota River during water years 2012 through 2016 to quantify sediment loads and improve understanding of sediment-transport relations. Annual sediment loads were computed for calendar years 2011 through 2014.Data collected from water years 2011 through 2014 indicated that two tributaries, Le Sueur River and High Island Creek, had the highest sediment yield and concentrations of suspended sediment. These tributaries also had greater stream gradients than the sites on the Minnesota River. Suspended fines were greater than suspended sand at all sites in the study area. The range of median particle sizes matched the range for stream gradients from greatest to smallest. Bedload ranged from 3 to 20 percent of the total load at the Le Sueur River, Minnesota River at Mankato, and High Island Creek and was less than 1 percent of the total load at the Minnesota River near Jordan and at Fort Snelling State Park. The reach of the Minnesota River between Mankato and Jordan is a major source of sediment, with the sediment yield at Jordan being two and a half times greater than at Mankato. Between Jordan and Fort Snelling, the sediment yield decreases substantially, which indicates that the Minnesota River in this reach is a sink for sediment. Surrogate measurements (acoustic backscatter) collected with suspended-sediment concentration data from water years 2012 through 2016 from the Minnesota River at Fort Snelling State Park indicated strong relations between the acoustic backscatter and suspended-sediment concentrations. These results point to the dynamic nature of sediment aggradation, degradation, and transport in the Minnesota River Basin. The analyses described in this report will improve the understanding of sediment-transport relations and sediment budgets in the Minnesota River Basin.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA520884','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA520884"><span>Protecting Secure Facilities From Underground Intrusion Using Seismic/Acoustic Sensor Arrays</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2009-08-01</p> <p>the upper 6 meters of sediments were deposited as part of a delta during a time of higher sea level, when low-gradient rivers carried fine-grained...geological site characterization and stratigraphy and sedimentation processes. Dr. Jason R. McKenna is a geophysicist at the United States Army Engineer...doctrine is being revised to address the engineer force structure at all levels to ensure that emerging lessons learned from Iraq and Afghanistan are</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70027237','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70027237"><span>Sedimentary processes of the lower Monterey Fan channel and channel-mouth lobe</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Klaucke, I.; Masson, D.G.; Kenyon, Neil H.; Gardner, J.V.</p> <p>2004-01-01</p> <p>The distribution of deposits, sediment transport pathways and processes on the lower Monterey Fan channel and channel-mouth lobe (CML) are studied through the integration of GLORIA and TOBI sidescan sonar data with 7-kHz subbottom profiler records and sediment cores for ground-truthing. The lower Monterey channel is characterised by an up to 30-m-deep channel with poorly developed levees and alternating muddy and silty muddy overbank deposits. The channel is discontinuous, disappearing where gradients are less than about 1:350. Ground-truthing of the large CML shows that the entire CML is characterised by widespread deposits of generally fine sand, with coarser sand at the base of turbidites. Sand is particularly concentrated in finger-like areas of low-backscatter intensity and is interpreted as the result of non-turbulent sediment-gravity flows depositing metres thick massive, fine sand. TOBI sidescan sonar data reveal recent erosional features in the form of scours, secondary channels, large flow slides, and trains of blocks at the distal end of the CML. Erosion is probably related to increasing gradient as the CML approaches Murray Fracture zone and to differential loading of sandy submarine fan deposits onto pelagic clays. Reworking of older flow slides by sediment transport processes on the lobe produces trains of blocks that are several metres in diameter and aligned parallel to the flow direction. ?? 2004 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014EGUGA..16.7391B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014EGUGA..16.7391B"><span>Tide-driven fluid mud transport in the Ems estuary</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Becker, Marius; Maushake, Christian; Winter, Christian</p> <p>2014-05-01</p> <p>The Ems estuary, located at the border between The Netherlands and Germany, experienced a significant change of the hydrodynamic regime during the past decades, as a result of extensive river engineering. With the net sediment transport now being flood-oriented, suspended sediment concentrations have increased dramatically, inducing siltation and formation of fluid mud layers, which, in turn, influence hydraulic flow properties, such as turbulence and the apparent bed roughness. Here, the process-based understanding of fluid mud is essential to model and predict mud accumulation, not only regarding the anthropogenic impact, but also in view of the expected changes of environmental boundary conditions, i.e., sea level rise. In the recent past, substantial progress has been made concerning the understanding of estuarine circulation and influence of tidal asymmetry on upstream sediment accumulation. While associated sediment transport formulations have been implemented in the framework of numerical modelling systems, in-situ data of fluid mud are scarce. This study presents results on tide-driven fluid mud dynamics, measured during four tidal cycles aside the navigation channel in the Ems estuary. Lutoclines, i.e., strong vertical density gradients, were detected by sediment echo sounder (SES). Acoustic Doppler current profiles (ADCP) of different acoustic frequencies were used to determine hydrodynamic parameters and the vertical distribution of suspended sediment concentrations in the upper part of the water column. These continuous profiling measurements were complemented by CTD, ADV, and OBS casts. SES and ADCP profiles show cycles of fluid mud entrainment during accelerating flow, and subsequent settling, and the reformation of a lutocline during decelerating flow and slack water. Significant differences are revealed between flood and ebb phase. Highest entrainment rates are measured at the beginning of the flood phase, associated with strong current shear and rapid vertical mixing, inducing the highest instantaneous suspended sediment flux measured during the tidal cycle. During decelerating flood currents a lutocline is again established at a certain distance above the consolidated river bed. During slack water after the flood phase the concentration gradient increases and the thickness of the fluid mud layer below is constant, also during a significant part of the ebb phase. As water depth decreases during ebb, entrainment occurs only at the upper part of the fluid mud layer. The suspended sediment flux is low compared to the flood phase. These observations are further elaborated using turbulence parameters obtained from ADV and ADCP, explaining the difference between ebb and flood concerning the vertical location of the maximum concentration gradient. This study is funded through DFG-Research Center / Excellence Cluster "The Ocean in the Earth System". The Senckenberg Institute and the Federal Waterways Engineering and Research Institute are acknowledged for technical support.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20953988','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20953988"><span>Effect of DEM mesh size on AnnAGNPS simulation and slope correction.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wang, Xiaoyan; Lin, Q</p> <p>2011-08-01</p> <p>The objective of this paper is to study the impact of the mesh size of the digital elevation model (DEM) on terrain attributes within an Annualized AGricultural NonPoint Source pollution (AnnAGNPS) Model simulation at watershed scale and provide a correction of slope gradient for low resolution DEMs. The effect of different grid sizes of DEMs on terrain attributes was examined by comparing eight DEMs (30, 40, 50, 60, 70, 80, 90, and 100 m). The accuracy of the AnnAGNPS stimulation on runoff, sediments, and nutrient loads is evaluated. The results are as follows: (1) Rnoff does not vary much with decrease of DEM resolution whereas soil erosion and total nitrogen (TN) load change prominently. There is little effect on runoff simulation of AnnAGNPS modeling by the amended slope using an adjusted 50 m DEM. (2) A decrease of sediment yield and TN load is observed with an increase of DEM mesh size from 30 to 60 m; a slight decrease of sediment and TN load with the DEM mesh size bigger than 60 m. There is similar trend for total phosphorus (TP) variation, but with less range of variation, the simulation of sediment, TN, and TP increase, in which sediment increase up to 1.75 times compared to the model using unadjusted 50 m DEM. In all, the amended simulation still has a large difference relative to the results using 30 m DEM. AnnAGNPS is less reliable for sediment loading prediction in a small hilly watershed. (3) Resolution of DEM has significant impact on slope gradient. The average, minimum, maximum of slope from the various DEMs reduced obviously with the decrease of DEM precision. For the grade of 0∼15°, the slopes at lower resolution DEM are generally bigger than those at higher resolution DEM. But for the grade bigger than 15°, the slopes at lower resolution DEM are generally smaller than those at higher resolution DEM. So it is necessary to adjust the slope with a fitting equation. A cubic model is used for correction of slope gradient from lower resolution to that from higher resolution. Results for Dage watershed showed that fine meshes are desired to avoid large underestimates of sediment and total nitrogen loads and moderate underestimates of total phosphorus loads even with the slopes for the 50 m DEM adjusted to be more similar to the slopes from the 30 m DEM. Decreasing the mesh size beyond this threshold does not substantially affect the computed runoff flux but generated prediction errors for nitrogen and sediment yields. So the appropriate DEM will control error and make simulation at acceptable level.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18823390','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18823390"><span>Oxygen and the spatial structure of microbial communities.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Fenchel, Tom; Finlay, Bland</p> <p>2008-11-01</p> <p>Oxygen has two faces. On one side it is the terminal electron acceptor of aerobic respiration - the most efficient engine of energy metabolism. On the other hand, oxygen is toxic because the reduction of molecular O2 creates reactive oxygen species such as the superoxide anion, peroxide, and the hydroxyl radical. Probably most prokaryotes, and virtually all eukaryotes, depend on oxygen respiration, and we show that the ambiguous relation to oxygen is both an evolutionary force and a dominating factor driving functional interactions and the spatial structure of microbial communities.We focus on microbial communities that are specialised for life in concentration gradients of oxygen, where they acquire the full panoply of specific requirements from limited ranges of PO2, which also support the spatial organisation of microbial communities. Marine and lake sediments provide examples of steep O2 gradients, which arise because consumption or production of oxygen exceeds transport rates of molecular diffusion. Deep lakes undergo thermal stratification in warm waters, resulting in seasonal anaerobiosis below the thermocline, and lakes with a permanent pycnocline often have permanent anoxic deep water. The oxycline is here biologically similar to sediments, and it harbours similar microbial biota, the main difference being the spatial scale. In sediments, transport is dominated by molecular diffusion, and in the water column, turbulent mixing dominates vertical transport. Cell size determines the minimum requirement of aerobic organisms. For bacteria (and mitochondria), the half-saturation constant for oxygen uptake ranges within 0.05-0.1% atmospheric saturation; for the amoeba Acanthamoeba castellanii it is 0.2%, and for two ciliate species measuring around 150 microm, it is 1-2 % atmospheric saturation. Protection against O2 toxicity has an energetic cost that increases with increasing ambient O2 tension. Oxygen sensing seems universal in aquatic organisms. Many aspects of oxygen sensing are incompletely understood, but the mechanisms seem to be evolutionarily conserved. A simple method of studying oxygen preference in microbes is to identify the preferred oxygen tension accumulating in O2 gradients. Microorganisms cannot sense the direction of a chemical gradient directly, so they use other devices to orient themselves. Different mechanisms in different prokaryotic and eukaryotic microbes are described. In O2 gradients, many bacteria and protozoa are vertically distributed according to oxygen tension and they show a very limited range of preferred PO2. In some pigmented protists the required PO2 is contingent on light due to photochemically generated reactive oxygen species. In protists that harbour endosymbiotic phototrophs, orientation towards light is mediated through the oxygen production of their photosynthetic symbionts. Oxygen plays a similar role for the distribution of small metazoans (meiofauna) in sediments, but there is little experimental evidence for this. Thus the oxygenated sediments surrounding ventilated animal burrows provide a special habitat for metazoan meiofauna as well as unicellular organisms.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013AGUFMEP13A0837G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013AGUFMEP13A0837G"><span>Feedbacks Between Wave Energy And Declining Coral Reef Structure: Implications For Coastal Morphodynamics</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Grady, A. E.; Jenkins, C. J.; Moore, L. J.; Potts, D. C.; Burgess, P. M.; Storlazzi, C. D.; Elias, E.; Reidenbach, M. A.</p> <p>2013-12-01</p> <p>The incident wave energy dissipated by the structural complexity and bottom roughness of coral reef ecosystems, and the carbonate sediment produced by framework-building corals, provide natural shoreline protection and nourishment, respectively. Globally, coral reef ecosystems are in decline as a result of ocean warming and acidification, which is exacerbated by chronic regional stressors such as pollution and disease. As a consequence of declining reef health, many reef ecosystems are experiencing reduced coral cover and shifts to dominance by macroalgae, resulting in a loss of rugosity and thus hydrodynamic roughness. As coral reef architecture is compromised and carbonate skeletons are eroded, wave energy dissipation and sediment transport patterns--along with the carbonate sediment budget of the coastal environment--may be altered. Using a Delft3D numerical model of the south-central Molokai, Hawaii, fringing reef, we simulate the effects of changing reef states on wave energy and sediment transport. To determine the temporally-varying effects of biotic and abiotic stressors such as storms and bleaching on the reef structure and carbonate production, we couple Delft3D with CarboLOT, a model that simulates growth and competition of carbonate-producing organisms. CarboLOT is driven by the Lotka-Volterra population ecology equations and niche suitability principles, and accesses the CarboKB database for region-specific, carbonate-producing species information on growth rates, reproduction patterns, habitat suitability, as well as organism geometries. Simulations assess how changing reef states--which alter carbonate sediment production and reef morphology and thus hydrodynamic roughness--impact wave attenuation and sediment transport gradients along reef-fronted beaches. Initial results suggest that along fringing reefs having characteristics similar to the Molokai fringing reef, projected sea level rise will likely outpace coral reef accretion, and the increased residual wave energy transported to the coast may result in the alteration of alongshore sediment transport gradients and substantial changes to coastal morphology.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29870949','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29870949"><span>The role of zeta potential in the adhesion of E. coli to suspended intertidal sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wyness, Adam J; Paterson, David M; Defew, Emma C; Stutter, Marc I; Avery, Lisa M</p> <p>2018-05-29</p> <p>The extent of pathogen transport to and within aquatic systems depends heavily on whether the bacterial cells are freely suspended or in association with suspended particles. The surface charge of both bacterial cells and suspended particles affects cell-particle adhesion and subsequent transport and exposure pathways through settling and resuspension cycles. This study investigated the adhesion of Faecal Indicator Organisms (FIOs) to natural suspended intertidal sediments over the salinity gradient encountered at the transition zone from freshwater to marine environments. Phenotypic characteristics of three E. coli strains, and the zeta potential (surface charge) of the E. coli strains and 3 physically different types of intertidal sediments was measured over a salinity gradient from 0 to 5 Practical Salinity Units (PSU). A batch adhesion microcosm experiment was constructed with each combination of E. coli strain, intertidal sediment and 0, 2, 3.5 and 5 PSU. The zeta potential profile of one E. coli strain had a low negative charge and did not change in response to an increase in salinity, and the remaining E. coli strains and the sediments exhibited a more negative charge that decreased with an increase in salinity. Strain type was the most important factor in explaining cell-particle adhesion, however adhesion was also dependant on sediment type and salinity (2, 3.5 PSU > 0, 5 PSU). Contrary to traditional colloidal (Derjaguin, Landau, Vervey, and Overbeek (DLVO)) theory, zeta potential of strain or sediment did not correlate with cell-particle adhesion. E. coli strain characteristics were the defining factor in cell-particle adhesion, implying that diverse strain-specific transport and exposure pathways may exist. Further research applying these findings on a catchment scale is necessary to elucidate these pathways in order to improve accuracy of FIO fate and transport models. Copyright © 2018 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70037709','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70037709"><span>Debris flows resulting from glacial-lake outburst floods in tibet, China</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Cui, P.; Dang, C.; Cheng, Z.; Scott, K.</p> <p>2010-01-01</p> <p>During the last 70 years of general climatic amelioration, 18 glacial-lake outburst floods (GLOFs) and related debris flows have occurred from 15 moraine-dammed lakes in Tibet, China. Catastrophic loss of life and property has occurred because of the following factors: the large volumes of water discharged, the steep gradients of the U-shaped channels, and the amount and texture of the downstream channel bed and bank material. The peak discharge of each GLOF exceeded 1000 m3/s. These flood discharges transformed to non-cohesive debris flows if the channels contained sufficient loose sediment for entrainment (bulking) and if their gradients were >1%. We focus on this key element, transformation, and suggest that it be included in evaluating future GLOF-related risk, the probability of transformation to debris flow and hyperconcentrated flow. The general, sequential evolution of the flows can be described as from proximal GLOFs, to sedimentladen streamflow, to hyperconcentrated flow, to non-cohesive debris flow (viscous or cohesive debris flow only if sufficient fine sediment is present), and then, distally, back to hyperconcentrated flow and sediment-laden streamflow as sediment is progressively deposited. Most of the Tibet examples transformed only to non-cohesive debris flows. The important lesson for future hazard assessment and mitigation planning is that, as a GLOF entrains (bulks) enough sediment to become a debris flow, the flow volume must increase by at least three times (the "bulking factor"). In fact, the transforming flow waves overrun and mix with downstream streamflow, in addition to adding the entrained sediment (and thus enabling addition of yet more sediment and a bulking factor in excess of three times). To effectively reduce the risk of GLOF debris flows, reducing the level of a potentially dangerous lake with a siphon or excavated spillway or installing gabions in combination with a downstream debris dam are the primary approaches.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3928433','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3928433"><span>Benthic and Pelagic Pathways of Methylmercury Bioaccumulation in Estuarine Food Webs of the Northeast United States</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Chen, Celia Y.; Borsuk, Mark E.; Bugge, Deenie M.; Hollweg, Terill; Balcom, Prentiss H.; Ward, Darren M.; Williams, Jason; Mason, Robert P.</p> <p>2014-01-01</p> <p>Methylmercury (MeHg) is a contaminant of global concern that bioaccumulates and bioamagnifies in marine food webs. Lower trophic level fauna are important conduits of MeHg from sediment and water to estuarine and coastal fish harvested for human consumption. However, the sources and pathways of MeHg to these coastal fisheries are poorly known particularly the potential for transfer of MeHg from the sediment to biotic compartments. Across a broad gradient of human land impacts, we analyzed MeHg concentrations in food webs at ten estuarine sites in the Northeast US (from the Hackensack Meadowlands, NJ to the Gulf of Maine). MeHg concentrations in water column particulate material, but not in sediments, were predictive of MeHg concentrations in fish (killifish and Atlantic silversides). Moreover, MeHg concentrations were higher in pelagic fauna than in benthic-feeding fauna suggesting that MeHg delivery to the water column from methylation sites from within or outside of the estuary may be an important driver of MeHg bioaccumulation in estuarine pelagic food webs. In contrast, bulk sediment MeHg concentrations were only predictive of concentrations of MeHg in the infaunal worms. Our results across a broad gradient of sites demonstrate that the pathways of MeHg to lower trophic level estuarine organisms are distinctly different between benthic deposit feeders and forage fish. Thus, even in systems with contaminated sediments, transfer of MeHg into estuarine food webs maybe driven more by the efficiency of processes that determine MeHg input and bioavailability in the water column. PMID:24558491</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018JGRF..123...46P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018JGRF..123...46P"><span>The Role of Three-Dimensional Boundary Stresses in Limiting the Occurrence and Size of Experimental Landslides</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Prancevic, Jeffrey P.; Lamb, Michael P.; Palucis, Marisa C.; Venditti, Jeremy G.</p> <p>2018-01-01</p> <p>The occurrence of seepage-induced shallow landslides on hillslopes and steep channel beds is important for landscape evolution and natural hazards. Infinite-slope stability models have been applied for seven decades, but sediment beds generally require higher water saturation levels than predicted for failure, and controlled experiments are needed to test models. We initiated 90 landslides in a 5 m long laboratory flume with a range in sediment sizes (D = 0.7, 2, 5, and 15 mm) and hillslope angles (θ = 20° to 43°), resulting in subsurface flow that spanned the Darcian and turbulent regimes, and failures that occurred with subsaturated and supersaturated sediment beds. Near complete saturation was required for failure in most experiments, with water levels far greater than predicted by infinite-slope stability models. Although 3-D force balance models predict that larger landslides are less stable, observed downslope landslide lengths were typically only several decimeters, not the entire flume length. Boundary stresses associated with short landslides can explain the increased water levels required for failure, and we suggest that short failures are tied to heterogeneities in granular properties. Boundary stresses also limited landslide thicknesses, and landslides progressively thinned on lower gradient hillslopes until they were one grain diameter thick, corresponding to a change from near-saturated to supersaturated sediment beds. Thus, landslides are expected to be thick on steep hillslopes with large frictional stresses acting on the boundaries, whereas landslides should be thin on low-gradient hillslopes or in channel beds with a critical saturation level that is determined by sediment size.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013AGUFM.B13C0481M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013AGUFM.B13C0481M"><span>Metabolic activity of subseafloor microbes in the South Pacific Gyre</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Morono, Y.; Ito, M.; Terada, T.; Inagaki, F.</p> <p>2013-12-01</p> <p>The South Pacific Gyre (SPG) is characterized as the most oligotrophic open ocean environment. The sediment is rich in oxygen but poor in energy-sources such as reduced organic matter, and hence harbors very low numbers of microbial cells in relatively shallow subseafloor sediment (D'Hondt et al., 2009; Kallmeyer et al., 2012). In such an energy-limited sedimentary habitat, a small size of microbial community persists living functions with extraordinary low oxygen-consumption rate (Røy et al., 2012). During IODP Expedition 329, a series of sediment samples were successfully recovered from 7 drill sites (U1365-1371) from the seafloor to basement in the SPG, providing an unprecedented opportunity to study metabolic activity of the aerobic subseafloor microbial communities. We initiated incubation onboard by adding stable isotope-labeled substrates to the freshly collected sediment sample, such as 13C and/or 15N-labeled bicarbonate, glucose, amino acids, acetate, and ammonium under the (micro-) aerobic condition. One of the technological challenges in this study is to harvest microbial cells from very low-biomass sediment samples for the analysis using nano-scale secondary ion mass spectrometry (NanoSIMS). To address the technical issue, we improved existing cell separation technique for the SPG sediment samples with small inorganic zeolitic grains. By monitoring cell recovery rates through an image-based cell enumeration technique (Morono et al., 2009), we found that cell recovery rates in the SPG sediment samples are generally lower than those in other oceanographic settings (i.e., organic-rich ocean margin sediments). To gain higher cell recovery ratio, we applied multiple density gradient layers, resulting in the cell recovery ratio up to around 80-95% (Morono et al., in press). Then, using the newly developed cell separation technique, we successfully sorted enough number of microbial cells in small spots on the membrane (i.e., 103 to 105 cells per spot). NanoSIMS analysis showed incorporation of the supplemented stable isotope-labeled substrates after 1.5 year-incubation. The substrate incorporation rates of individual microbial cell ranged in average from 1/10 to 1/2 of those values previously observed in an organic-rich ocean margin sediment (Morono et al., 2011). References S. D'Hondt et al., Subseafloor sedimentary life in the South Pacific Gyre. Proc Natl Acad Sci USA 106, 11651 (2009) J. Kallmeyeret al., Global distribution of microbial abundance and biomass in subseafloor sediment. Proc Natl Acad Sci USA 109, 16213 (2012) H. Røy et al., Aerobic microbial respiration in 86-million-year-old deep-sea red clay. Science 336, 922 (2012) Y. Morono et al. Discriminative detection and enumeration of microbial life in marine subsurface sediments. ISME J 3, 503 (2009) Y. Morono et al., An Improved Cell Separation Technique for Marine Subsurface Sediments: Applications for High-throughput Analysis Using Flow Cytometry and Cell Sorting. Environ Microbiol, (2013) Y. Morono et al., Carbon and nitrogen assimilation in deep subseafloor microbial cells. Proc Natl Acad Sci USA 108, 18295 (2011)</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP13E..06L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP13E..06L"><span>Pairing Coral Geochemical Analyses with an Ecosystem Services Model to Assess Drivers and Impacts of Sediment Delivery within Micronesia's Largest Estuary, Ngeremeduu Bay</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lewis, S.; Dunbar, R. B.; Mucciarone, D.; Barkdull, M.</p> <p>2017-12-01</p> <p>Scientific tools assessing impacts to watershed and coastal ecosystem services, like those from land-use land conversion (LULC), are critical for sustainable land management strategies. Small island nations are particularly vulnerable to LULC threats, especially sediment delivery, given their small spatial size and reliance on natural resources. In the Republic of Palau, a small Pacific island country, three major land-use activities—construction, fires, and agriculture— have increased sediment delivery to important estuarine and coastal habitats (i.e., rivers, mangroves, coral reefs) over the past 30 years. This project examines the predictive capacity of an ecosystem services model, Natural Capital Project's InVEST, for sediment delivery using historic land-use and coral geochemical analysis. These refined model projections are used to assess ecosystem services tradeoffs under different future land development and management scenarios. Coral cores (20-41cm in length) were sampled along a high-to-low sedimentation gradient (i.e., near major rivers (high-impact) and ocean (low-impact)) in Micronesia's largest estuary, Ngeremeduu Bay. Isotopic indicators of seasonality (δ18O and δ13C values (% VPDB)) were used to construct the age model for each core. Barium, Manganese, and Yttrium were used as trace metal proxies for sedimentation and measured in each core using a laser ablation ICP-MS. Finally, the Natural Capital Project's InVEST sediment delivery model was paired with Geospatial data to examine the drivers of sediment delivery (i.e., construction, farms and fires) within these two watersheds. A thirty-year record of trace metal to calcium ratios in coral skeletons show a peak in sedimentation during 2006 and 2007, and in 2012. These results suggest historic peaks in sediment delivery correlating to large-scale road construction and support previous findings that Ngeremeduu Bay has reached a tipping point of retaining sediment. Natural Capital's project InVEST sediment delivery model results suggest fires increases sediment exportation by an order of magnitude compared with the other major land-use activities. A refined measure of LULC from a novel database (earth-moving permits) will be used to develop a more accurate depiction of sediment delivery to estuarine and coastal habitats.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li class="active"><span>17</span></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_17 --> <div id="page_18" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li class="active"><span>18</span></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="341"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3364523','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3364523"><span>Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Durbin, Alan M.; Teske, Andreas</p> <p>2012-01-01</p> <p>Examining the patterns of archaeal diversity in little-explored organic-lean marine subsurface sediments presents an opportunity to study the association of phylogenetic affiliation and habitat preference in uncultured marine Archaea. Here we have compiled and re-analyzed published archaeal 16S rRNA clone library datasets across a spectrum of sediment trophic states characterized by a wide range of terminal electron-accepting processes. Our results show that organic-lean marine sediments in deep marine basins and oligotrophic open ocean locations are inhabited by distinct lineages of archaea that are not found in the more frequently studied, organic-rich continental margin sediments. We hypothesize that different combinations of electron donor and acceptor concentrations along the organic-rich/organic-lean spectrum result in distinct archaeal communities, and propose an integrated classification of habitat characteristics and archaeal community structure. PMID:22666218</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1052233','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1052233"><span>Final Project Report: Release of aged contaminants from weathered sediments: Effects of sorbate speciation on scaling of reactive transport</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Jon Chorover, University of Arizona; Peggy O'ÃÂÃÂDay, University of California, Merced; Karl Mueller, Penn State University</p> <p>2012-10-01</p> <p>Hanford sediments impacted by hyperalkaline high level radioactive waste have undergone incongruent silicate mineral weathering concurrent with contaminant uptake. In this project, we studied the impact of background pore water (BPW) on strontium, cesium and iodine desorption and transport in Hanford sediments that were experimentally weathered by contact with simulated hyperalkaline tank waste leachate (STWL) solutions. Using those lab-weathered Hanford sediments (HS) and model precipitates formed during nucleation from homogeneous STWL solutions (HN), we (i) provided detailed characterization of reaction products over a matrix of field-relevant gradients in contaminant concentration, PCO2, and reaction time; (ii) improved molecular-scale understanding of howmore » sorbate speciation controls contaminant desorption from weathered sediments upon removal of caustic sources; and (iii) developed a mechanistic, predictive model of meso- to field-scale contaminant reactive transport under these conditions.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70013334','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70013334"><span>Comparison of sediments and organisms in identifying sources of biologically available trace metal contamination</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Thomson, E.A.; Luoma, S.N.; Johansson, C.E.; Cain, D.J.</p> <p>1984-01-01</p> <p>Sediments and an indicator organism (Macoma balthica, a deposit-feeding bivalve) were used to assess the relative importance of secondary sewage, urban runoff, a landfill containing metal-enriched ash wastes and a yacht harbor in contributing to Ag, Cu and Zn enrichment in South San Francisco Bay. Spatial gradients in sediments and organisms showed Cu and Ag enrichment originated from sewage discharge, whereas Zn enrichment originated from both sewage and urban runoff. Elevated concentrations of Cu in the sediments of the yacht harbor resulted from a high abundance of fine particles. The biological availability of Cu, Ag and Zn did not coincide with metal enrichment in sediments. The availability of Cu and Ag was greatest nearest the sewage outfall and greater in winter and spring than in summer. The availability of Zn in urban runoff appeared to be lower than the availability of Zn associated with sewage.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23987916','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23987916"><span>Benthic exchange and biogeochemical cycling in permeable sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Huettel, Markus; Berg, Peter; Kostka, Joel E</p> <p>2014-01-01</p> <p>The sandy sediments that blanket the inner shelf are situated in a zone where nutrient input from land and strong mixing produce maximum primary production and tight coupling between water column and sedimentary processes. The high permeability of the shelf sands renders them susceptible to pressure gradients generated by hydrodynamic and biological forces that modulate spatial and temporal patterns of water circulation through these sediments. The resulting dynamic three-dimensional patterns of particle and solute distribution generate a broad spectrum of biogeochemical reaction zones that facilitate effective decomposition of the pelagic and benthic primary production products. The intricate coupling between the water column and sediment makes it challenging to quantify the production and decomposition processes and the resultant fluxes in permeable shelf sands. Recent technical developments have led to insights into the high biogeochemical and biological activity of these permeable sediments and their role in the global cycles of matter.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18368764','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18368764"><span>[Comparative analysis of the susceptibility and productivity of respiratory tract target cells of mice and rats exposed to inflienza virus in vitro].</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhukov, V A; Shishkina, L N; Sergeev, A A; Malkova, E M; Riabchikova, E I; Petrishchenko, V A; Sergeev, A N; Ustiuzhanina, N V; Nesvizhskiĭ, Iu V; Vorob'ev, A A</p> <p>2008-01-01</p> <p>The levels of susceptibility to influenza virus A/Aichi/2/68 H3N2 and the virus yield were determined using primary cells of the trachea and lungs of CD-1 mice and Wistar rats, and for 3 sets of cells obtained from primary lung cells of the both species by centrifugation in the gradient of density and by sedimentation on a surface. The values of ID50 virus dose for 10(6) cells and virus yield per 1 infected cell determined for primary mice cells were 4.0+/-0.47 and 3.2+/-0.27 IgEID50 (lung cells), 3.8+/-0.17 and 3.3+/-0.20 IgEID50 (tracheal cells), and those determined for primary rat cells were 4.0+/-0.35 and 2.1+/-0.24 IgEID50 (lung cells), 3.7+/-0.27 and 2.2+/-0.46 IgEID50 (tracheal cells). The values of ID50 and yield measured for mixtures of cells obtained from primary lung cells by centrifugation in gradient of density and by sedimentation on a surface differed insignificantly (p = 0.05) from the values of the corresponding parameters measured for lung and tracheal cells for both rats and mice. The analysis of data on the variation of the concentrations of different cell types in the experimental cell mixtures shows that type 1 and 2 alveolocytes possess significantly lower (p = 0.05) susceptibility and productivity vs. ciliated cells of the both species. The investigation was conducted within the frame of the ISTC/DARPA#450p project.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19.1129C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19.1129C"><span>Effects of terracing on soil and water conservation in China: A meta-analysis</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Chen, Die; Wei, Wei</p> <p>2017-04-01</p> <p>Terracing has long been considered a powerful strategy for soil and water conservation. However, the efficiency is limited by many factors, such as climate, soil properties, topography, land use, population and socioeconomic status. The aim of this critical review was to discuss the effects of terracing on soil and water conservation in China, using a systematic approach to select peer-reviewed articles published in English and Chinese. 46 individual studies were analyzed, involving six terracing structures (level terraces, slope-separated terraces, slope terraces, reverse-slope terraces, fanya juu terraces and half-moon terraces), a wide geographical range (Northeastern China, Southeastern hilly areas, Southwestern mountain areas and Northwestern-central China), and six land use types (forest, crop trees, cropland, shrub land, grassland and bare land) as well as a series of slope gradients ranging from 3° to 35°. Statistical meta-analysis with runoff for 593 observations and sediment for 636 observations confirmed that terracing had a significant effect on water erosion control. In terms of different terrace structures, runoff and sediment reduction were uppermost on slope-separated terraces. Land use in terraces also played a crucial role in the efficiency of conservation, and tree crops and forest were detected as the most powerful land covers in soil and water conservation due to large aboveground biomass and strong root systems below the ground, which directly reduces the pressure of terraces on rainwater redistribution. In addition, a significant positive correlation between slope gradients (3° 15° and 16° 35°) and terracing efficiency on soil and water conservation was observed. This study revealed the effectiveness and variation of terracing on water erosion control on the national scale, which can serve as a scientific basis to land managers and decision-makers.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/pages/biblio/1286891-size-separation-silver-nanoparticles-using-sucrose-gradient-centrifugation','SCIGOV-DOEP'); return false;" href="https://www.osti.gov/pages/biblio/1286891-size-separation-silver-nanoparticles-using-sucrose-gradient-centrifugation"><span>Size-separation of silver nanoparticles using sucrose gradient centrifugation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/pages">DOE PAGES</a></p> <p>Suresh, Anil K.; Pelletier, Dale A.; Moon, Ji Won; ...</p> <p>2015-08-28</p> <p>Size and shape distributions of nanoparticles can drastically contribute to the overall properties of nanoparticles, thereby influencing their interaction with different chemotherapeutic molecules, biological organisms and or materials and cell types. Therefore, to exploit the proper use of nanoparticles for various biomedical and biosensor applications, it is important to obtain well-separated monodispersed nanoparticles. However, gaining precise control over the morphological characteristics of nanoparticles during their synthesis is often a challenging task. Consequently, post-synthesis separation of nanoparticles is necessary. In the present study, we demonstrate the successful one-pot post-synthesis separation of anisotropic silver nanoparticles to near modispersities using sucrose density gradientmore » sedimentation. The separation of the nanoparticles was evidenced based on optical confirmation, and spectrophotometric and transmission electron microscopy measurements. Our results clearly demonstrate the facile separation of anisotropic silver nanoparticles using sucrose density gradient sedimentation and can enable the use of nanoparticles for various biomedical applications.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1286891','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1286891"><span>Size-separation of silver nanoparticles using sucrose gradient centrifugation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Suresh, Anil K.; Pelletier, Dale A.; Moon, Ji Won</p> <p></p> <p>Size and shape distributions of nanoparticles can drastically contribute to the overall properties of nanoparticles, thereby influencing their interaction with different chemotherapeutic molecules, biological organisms and or materials and cell types. Therefore, to exploit the proper use of nanoparticles for various biomedical and biosensor applications, it is important to obtain well-separated monodispersed nanoparticles. However, gaining precise control over the morphological characteristics of nanoparticles during their synthesis is often a challenging task. Consequently, post-synthesis separation of nanoparticles is necessary. In the present study, we demonstrate the successful one-pot post-synthesis separation of anisotropic silver nanoparticles to near modispersities using sucrose density gradientmore » sedimentation. The separation of the nanoparticles was evidenced based on optical confirmation, and spectrophotometric and transmission electron microscopy measurements. Our results clearly demonstrate the facile separation of anisotropic silver nanoparticles using sucrose density gradient sedimentation and can enable the use of nanoparticles for various biomedical applications.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24451477','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24451477"><span>Sedimentation dynamics and equilibrium profiles in multicomponent mixtures of colloidal particles.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Spruijt, E; Biesheuvel, P M</p> <p>2014-02-19</p> <p>In this paper we give a general theoretical framework that describes the sedimentation of multicomponent mixtures of particles with sizes ranging from molecules to macroscopic bodies. Both equilibrium sedimentation profiles and the dynamic process of settling, or its converse, creaming, are modeled. Equilibrium profiles are found to be in perfect agreement with experiments. Our model reconciles two apparently contradicting points of view about buoyancy, thereby resolving a long-lived paradox about the correct choice of the buoyant density. On the one hand, the buoyancy force follows necessarily from the suspension density, as it relates to the hydrostatic pressure gradient. On the other hand, sedimentation profiles of colloidal suspensions can be calculated directly using the fluid density as apparent buoyant density in colloidal systems in sedimentation-diffusion equilibrium (SDE) as a result of balancing gravitational and thermodynamic forces. Surprisingly, this balance also holds in multicomponent mixtures. This analysis resolves the ongoing debate of the correct choice of buoyant density (fluid or suspension): both approaches can be used in their own domain. We present calculations of equilibrium sedimentation profiles and dynamic sedimentation that show the consequences of these insights. In bidisperse mixtures of colloids, particles with a lower mass density than the homogeneous suspension will first cream and then settle, whereas particles with a suspension-matched mass density form transient, bimodal particle distributions during sedimentation, which disappear when equilibrium is reached. In all these cases, the centers of the distributions of the particles with the lowest mass density of the two, regardless of their actual mass, will be located in equilibrium above the so-called isopycnic point, a natural consequence of their hard-sphere interactions. We include these interactions using the Boublik-Mansoori-Carnahan-Starling-Leland (BMCSL) equation of state. Finally, we demonstrate that our model is not limited to hard spheres, by extending it to charged spherical particles, and to dumbbells, trimers and short chains of connected beads.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EGUGA..14.7783S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EGUGA..14.7783S"><span>Landscape self organisation: Modelling Sediment trains</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Schoorl, J. M.; Temme, A. J. A. M.; Veldkamp, A.</p> <p>2012-04-01</p> <p>Rivers tend to develop towards an equilibrium length profile, independently of exogenous factors. In general, although still under debate, this so-called self-organisation is assumed to be caused by simple feedbacks between sedimentation and erosion. Erosion correlates positively with gradient and discharge and sedimentation negatively. With the LAPSUS model, which was run for the catchment of the Sabinal, a small river in the South of Spain, this interplay of erosion and sedimentation results in sediment pulses (sequences of incision and sedimentation through time). These pulses are visualised in a short movie ( see http://www.youtube.com/watch?v=V5LDUMvYZxU). In this case the LAPSUS model run did not take climate, base level nor tectonics into account. Therefore, these pulses can be considered independent of them. Furthermore, different scenarios show that the existence of the pulses is independent of precipitation, erodibility and sedimentation rate, although they control the number and shape of the pulses. A fieldwork check showed the plausibility of the occurrence of these sediment pulses. We conclude that the pulses as modelled with LAPSUS are indeed the consequence of the feedbacks between erosion and sedimentation and are not depending on exogenous factors. Keywords: Landscape self-organisation, Erosion, Deposition, LAPSUS, Modelling</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25339574','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25339574"><span>Sediment type affects competition between a native and an exotic species in coastal China.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Li, Hong-Li; Wang, Yong-Yang; An, Shu-Qing; Zhi, Ying-Biao; Lei, Guang-Chun; Zhang, Ming-Xiang</p> <p>2014-10-23</p> <p>Different types of sediments in salt marsh have different physical and chemical characters. Thus sediment type plays a role in plant competition and growth in salt marsh ecosystems. Spartina anglica populations have been increasingly confined to upper elevation gradients of clay, and the niche sediment has changed. Because the niches of S. anglica and the native species Scirpus triqueter overlap, we conducted a greenhouse experiment to test the hypothesis that plant competition has changed under different types of sediments. Biomass and asexual reproduction were analyzed, and inter- and intraspecific competition was measured by log response ratio for the two species in both monoculture and combination under three sediment types (sand, clay and mixture of sand and clay). For S. anglica, biomass, ramet number and rhizome length in combination declined significantly compared with those in monoculture, and the intensity of interspecific competition was significantly higher than that of intraspecific competition under all sediments. For S. triqueter, the intensities of intra- and interspecific competition were not significantly different. This indicates that S. triqueter exerts an asymmetric competitive advantage over S. anglica across all sediments, but especially clay. Thus the sediment type changes competition between S. anglica and S. triqueter.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4206839','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4206839"><span>Sediment Type Affects Competition between a Native and an Exotic Species in Coastal China</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Li, Hong-Li; Wang, Yong-Yang; An, Shu-Qing; Zhi, Ying-Biao; Lei, Guang-Chun; Zhang, Ming-Xiang</p> <p>2014-01-01</p> <p>Different types of sediments in salt marsh have different physical and chemical characters. Thus sediment type plays a role in plant competition and growth in salt marsh ecosystems. Spartina anglica populations have been increasingly confined to upper elevation gradients of clay, and the niche sediment has changed. Because the niches of S. anglica and the native species Scirpus triqueter overlap, we conducted a greenhouse experiment to test the hypothesis that plant competition has changed under different types of sediments. Biomass and asexual reproduction were analyzed, and inter- and intraspecific competition was measured by log response ratio for the two species in both monoculture and combination under three sediment types (sand, clay and mixture of sand and clay). For S. anglica, biomass, ramet number and rhizome length in combination declined significantly compared with those in monoculture, and the intensity of interspecific competition was significantly higher than that of intraspecific competition under all sediments. For S. triqueter, the intensities of intra- and interspecific competition were not significantly different. This indicates that S. triqueter exerts an asymmetric competitive advantage over S. anglica across all sediments, but especially clay. Thus the sediment type changes competition between S. anglica and S. triqueter. PMID:25339574</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010EGUGA..12.5562K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010EGUGA..12.5562K"><span>Sediment Dynamics and Geohazards offshore Uruguay and Northern Argentina: First Results from the multi-disciplinary Meteor-Cruise M78-3</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Krastel, Sebastian; Freudenthal, Tim; Hanebuth, Till; Preu, Benedict; Schwenck, Tilmann; Strasser, Michael; Violante, Roberto; Wefer, Gerold; Winkelmann, Daniel</p> <p>2010-05-01</p> <p>About 90% of the sediments generated by weathering and erosion on land get finally deposited at the ocean margins. The sediment distribution processes and landscape evolution on land are relatively well understood, but comparably little is known about the role and relative importance of marine sediment dynamics in controlling the architectural evolution of ocean margins. Important players include hemi-pelagic settling, down-slope and current-controlled along-slope sediment transport, depositional and post-depositional sedimentary processes (e.g. consolidation and diagenesis), as well as the destabilization of sediment bodies and their erosion. Submarine landslides in this context thus may represent an important sediment transport process, but also a major geo-hazard due to the increasing number of offshore constructions as well as their potential to instantaneously displace large water masses triggering waves in densely populated coastal areas. Here we present first results from a seagoing expedition that aimed at investigating the interaction processes of sediment redistribution, partitioning, deposition and diagenesis from the coast to the deep-sea along the western South-Atlantic passive continental margin. During RV Meteor Cruise M78/3 in May-July 2009 the shelf, slope and rise offshore Argentina and Uruguay have been investigated by means of hydroacoustic and seismic mapping as well as geological sampling with conventional coring tools as well as the new MARUM seafloor drill rig (MeBo) that revealed recovery of geological strata sampled from up to 50m below seafloor. The working area is characterized by a high amount of fluvial input by the Rio de la Plata river. The continental slope is relatively wide and shows average slope gradients between 1 and 2.5 but locally higher slope gradients may occur (>5). The transition for the continental rise with low slope gradients is found in ~ 3000m water depth. The working area is located in a highly dynamic oceanographic regime. Cold Antarctic water masses of the northward flowing Malvina current meet warm water masses of the southward flowing Brazil current in the working area. Various types of sediment instabilities have been imaged in geophysical and core data, documenting particularly the continental slope offshore Uruguay to be locus of frequent submarine landslides. Apart from individual landslides, however, gravitational downslope sediment transport along the continental slope is restricted to the prominent Mar del Plata Canyon and possibly to smaller canyons indentified in the bathymetric data. The location of the canyons might be controlled by tectonics. In contrast, many morphological features (e.g. progradational terraces and slope parallel scarps with scour-geometries) reveal that sediment transport is predominantly influenced/controlled by strong contour bottom currents. This suggests a significant impact of the western boundary currents on the overall architectural evolution of the margin. Future studies using the acquired geophysical, sedimentological, physical property and geochemical data will (i) quantify the relative contribution of gravitational down-slope vs. along-slope processes through time in shaping this ocean margin and how it relates to the global ocean circulation pattern and sea-level change through time, (ii) investigate depositional and post-depositional processes and how they control submarine slope stability and submarine landslide initiation and (iii) explore the interaction and relative contribution of the various processes in controlling margin evolution, sediment dynamics and geohazard off Uruguay and Northern Argentina.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26803229','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26803229"><span>Microplastics in the Mediterranean Sea: Deposition in coastal shallow sediments, spatial variation and preferential grain size.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Alomar, Carme; Estarellas, Fernando; Deudero, Salud</p> <p>2016-04-01</p> <p>Marine litter loads in sea compartments are an emergent issue due to their ecological and biological consequences. This study addresses microplastic quantification and morphological description to test spatial differences along an anthropogenic gradient of coastal shallow sediments and further on to evaluate the preferential deposition of microplastics in a given sediment grain fraction. Sediments from Marine Protected Areas (MPAs) contained the highest concentrations of microplastics (MPs): up to 0.90 ± 0.10 MPs/g suggesting the transfer of microplastics from source areas to endpoint areas. In addition, a high proportion of microplastic filaments were found close to populated areas whereas fragment type microplastics were more common in MPAs. There was no clear trend between sediment grain size and microplastic deposition in sediments, although microplastics were always present in two grain size fractions: 2 mm > x > 1 mm and 1 mm > x 0.5 mm. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28571629','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28571629"><span>Ubiquity of microplastics in coastal seafloor sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ling, S D; Sinclair, M; Levi, C J; Reeves, S E; Edgar, G J</p> <p>2017-08-15</p> <p>Microplastic pollutants occur in marine environments globally, however estimates of seafloor concentrations are rare. Here we apply a novel method to quantify size-graded (0.038-4.0mm diam.) concentrations of plastics in marine sediments from 42 coastal and estuarine sites spanning pollution gradients across south-eastern Australia. Acid digestion/density separation revealed 9552 individual microplastics from 2.84l of sediment across all samples; equating to a regional average of 3.4 microplastics·ml -1 sediment. Microplastics occurred as filaments (84% of total) and particle forms (16% of total). Positive correlations between microplastic filaments and wave exposure, and microplastic particles with finer sediments, indicate hydrological/sediment-matrix properties are important for deposition/retention. Contrary to expectations, positive relationships were not evident between microplastics and other pollutants (heavy metals/sewage), nor were negative relationships with neighbouring reef biota detected. Rather, microplastics were ubiquitous across sampling sites. Positive associations with some faunal-elements (i.e. invertebrate species richness) nevertheless suggest high potential for microplastic ingestion. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/sir/2006/5265/','USGSPUBS'); return false;" href="https://pubs.usgs.gov/sir/2006/5265/"><span>Sedimentation in Goose Pasture Tarn, 1965-2005, Breckenridge, Colorado</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Elliott, John G.; Char, Stephen J.; Linhart, Samuel M.; Stephens, V. Cory; O'Neill, Gregory B.</p> <p>2006-01-01</p> <p>Goose Pasture Tarn, a 771-acre-foot reservoir in Summit County, Colorado, is the principal domestic water-storage facility for the Town of Breckenridge and collects runoff from approximately 42 square miles of the upper Blue River watershed. In the 40 years since the reservoir was constructed, deltaic deposits have accumulated at the mouths of two perennial streams that provide most of the inflow and sediment to the reservoir. The Blue River is a low-gradient braided channel and transports gravel- to silt-size sediment. Indiana Creek is a steep-gradient channel that transports boulder- to silt-size sediment. Both deltas are composed predominantly of gravel, sand, and silt, but silt has been deposited throughout the reservoir. In 2004, the U.S. Geological Survey, in cooperation with the Town of Breckenridge, began a study to determine the volume of accumulated sediment in Goose Pasture Tarn, the long-term sedimentation rate for the reservoir, and the particle-size and chemical characteristics of the sediment. Exposed delta deposits occupied 0.91 acre and had an estimated volume of 0.6 acre-foot in 2005. Aerial photographic analysis indicated both the Blue River and Indiana Creek deltas grew rapidly during time intervals that included larger-than-average annual flood peaks on the Blue River. Sediment-transport relations could not be developed for the Blue River or Indiana Creek because of minimal streamflow and infrequently observed sediment transport during the study; however, suspended-sediment loads ranged from 0.02 to 1.60 tons per day in the Blue River and from 0.06 to 1.55 tons per day in Indiana Creek. Bedload as a percentage of total load ranged from 9 to 27 percent. New reservoir stage-area and stage-capacity relations were developed from bathymetric and topographic surveys of the reservoir bed. The original 1965 reservoir bed topography and the accumulated sediment thickness were estimated from a seismic survey and manual probing. The surface area of Goose Pasture Tarn in 2005 was 66.4 acres, and the reservoir capacity was 771.1 acre-feet at a full-pool elevation of 9,886.4 feet. The 1965 surface area was 67.1 acres, and the reservoir capacity was 818.0 acre-feet, indicating that the reservoir surface area has decreased by 0.7 acre, or about 1.1 percent, and the reservoir capacity has decreased by 46.9 acre-feet, or about 5.7 percent over a 40-year period. Sediment thickness determined with seismic profiling ranged from 0 to 4.0 feet and averaged 0.7 foot, with lesser thicknesses in the deeper parts of the reservoir and greater thicknesses near the deltas. Probe-determined sediment thickness ranged from 1.0 to 4.4 feet and averaged 2.8 feet near the Blue River delta and ranged from 0.3 to 6.0 feet and averaged 3.6 feet near the Indiana Creek delta. Approximately 47.5 acre-feet of sediment has accumulated in Goose Pasture Tarn and in the Blue River and Indiana Creek deltas, or an average of 1.19 acre-feet per year. Sediment cores from several locations in the reservoir showed stratification, which is indicative of different depositional dates or mechanisms. Metal and trace-constituent levels from the cores were compared with three standards. Silver, cadmium, europium, lead, and zinc were present in greater concentrations than Southern Rocky Mountain background levels in four sediment cores, and cadmium, lead, and zinc levels also were equal to or exceeded the Threshold Effect Concentration standards. Lead exceeded the Probable Effect Concentration standard in silt from the Blue River delta and deep water near the north shore. Tin was present in greater concentrations than Southern Rocky Mountain background levels in deep water near the east shore, and chromium and copper levels were equal to or exceeded the Threshold Effect Concentration standards in these cores.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25455376','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25455376"><span>Population dynamics and antimicrobial susceptibility of Aeromonas spp. along a salinity gradient in an urban estuary in Northeastern Brazil.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Silva, Camila Magalhães; Evangelista-Barreto, Norma Suely; Vieira, Regine Helena Silva Dos Fernandes; Mendonça, Kamila Vieira; Sousa, Oscarina Viana de</p> <p>2014-12-15</p> <p>The main objective of this study was to quantify population and identify culturable species of Aeromonas in sediment and surface water collected along a salinity gradient in an urban estuary in Northeastern Brazil. Thirty sediment samples and 30 water samples were collected from 3 sampling locations (A, B and C) between October 2007 and April 2008. The Aeromonas count was 10-7050CFU/mL (A), 25-38,500CFU/mL (B) and<10CFU/mL (C) for water samples, and ∼100-37,500CFU/g (A), 1200-43,500CFU/g (B) and<10CFU/g (C) for sediment samples. Five species (Aeromonas caviae, A. sobria, A. trota, A. salmonicida and A. allosaccharophila) were identified among 41 isolates. All strains were sensitive to chloramphenicol and ceftriaxone, whereas 33 (80, 4%) strains were resistant to at least 2 of the 9 antibiotics tested. Resistance to erythromycin was mostly plasmidial. In conclusion, due to pollution, the Cocó River is contaminated by pathogenic strains of Aeromonas spp. with a high incidence of antibacterial resistance, posing a serious risk to human health. Copyright © 2014 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23877581','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23877581"><span>Molecular diversity and tools for deciphering the methanogen community structure and diversity in freshwater sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Chaudhary, Prem Prashant; Brablcová, Lenka; Buriánková, Iva; Rulík, Martin</p> <p>2013-09-01</p> <p>Methanogenic archaeal communities existing in freshwater sediments are responsible for approximately 50 % of the total global emission of methane. This process contributes significantly to global warming and, hence, necessitates interventional control measures to limit its emission. Unfortunately, the diversity and functional interactions of methanogenic populations occurring in these habitats are yet to be fully characterized. Considering several disadvantages of conventional culture-based methodologies, in recent years, impetus is given to molecular biology approaches to determine the community structure of freshwater sedimentary methanogenic archaea. 16S rRNA and methyl coenzyme M reductase (mcrA) gene-based cloning techniques are the first choice for this purpose. In addition, electrophoresis-based (denaturing gradient gel electrophoresis, temperature gradient gel electrophoresis, and terminal restriction fragment length polymorphism) and quantitative real-time polymerase chain reaction techniques have also found extensive applications. These techniques are highly sensitive, rapid, and reliable as compared to traditional culture-dependent approaches. Molecular diversity studies revealed the dominance of the orders Methanomicrobiales and Methanosarcinales of methanogens in freshwater sediments. The present review discusses in detail the status of the diversity of methanogens and the molecular approaches applied in this area of research.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1998ECSS...46..757T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1998ECSS...46..757T"><span>Changes in Community Structure and Biomass of Seagrass Communities along Gradients of Siltation in SE Asia</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Terrados, J.; Duarte, C. M.; Fortes, M. D.; Borum, J.; Agawin, N. S. R.; Bach, S.; Thampanya, U.; Kamp-Nielsen, L.; Kenworthy, W. J.; Geertz-Hansen, O.; Vermaat, J.</p> <p>1998-05-01</p> <p>The patterns of change in species richness and biomass of Southeast Asian seagrass communities along siltation gradients were compared at different sites in The Philippines and Thailand. Seagrass species richness and community leaf biomass declined sharply when the silt and clay content of the sediment exceeded 15%. Syringodium isoetifoliumand Cymodocea rotundatawere present only in multispecific meadows, while Enhalus acoroideswas the only species remaining in heavily silted sediments. The following ranking of species sensitivity to siltation is proposed (from the least to most sensitive): S. isoetifolium→ C. rotundata→ Thalassia hemprichii→ Cymodocea serrulata→ Halodule uninervis→ Halophila ovalis→ Enhalus acoroides. Positive correlations were found between species richness and both community leaf biomass and the leaf biomass of individual seagrass species. The increase in community biomass with increasing species richness was associated with a more even distribution of the leaf biomass among seagrass species. The relationships between percent silt and clay in the sediment and seagrass community leaf biomass and species richness provide useful dose-response relationships which can be used to set allowable or threshold siltation loads in SE Asian coastal waters, and indicate that species loss from seagrass meadows is an early warning of detrimental siltation loads.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=19850023447&hterms=leukemia&qs=N%3D0%26Ntk%3DAll%26Ntx%3Dmode%2Bmatchall%26Ntt%3Dleukemia','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=19850023447&hterms=leukemia&qs=N%3D0%26Ntk%3DAll%26Ntx%3Dmode%2Bmatchall%26Ntt%3Dleukemia"><span>The role of cell size in density gradient electrophoretic separation of mouse leukemia cells according to position in the cell cycle</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Plank, L. D.; Kunze, M. E.; Todd, P. W.</p> <p>1985-01-01</p> <p>Cultured mouse leukemia cells line L5178Y were subjected to upward electrophoresis in a density gradient and the slower migrating cell populations were enriched in G2 cells. It is indicated that this cell line does not change electrophoretic mobility through the cell cycle. The possibility that increased sedimentation downward on the part of the larger G2 cells caused this separation was explored. Two different cell populations were investigated. The log phase population was found to migrate upward faster than the G2 population, and a similar difference between their velocities and calculated on the basis of a 1 um diameter difference between the two cell populations. The G2 and G1 enriched populations were isolated by Ficoll density gradient sedimentation. The bottom fraction was enriched in G2 cells and the top fraction was enriched with G1 cells, especially when compared with starting materials. The electrophoretic mobilities of these two cell populations did not differ significantly from one another. Cell diameter dependent migration curves were calculated and were found to be different. Families of migration curves that differ when cell size is considered as a parameter are predicted.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li class="active"><span>18</span></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_18 --> <div id="page_19" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li class="active"><span>19</span></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="361"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011AcSpe..66..362D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011AcSpe..66..362D"><span>High performance liquid chromatography hyphenated to inductively coupled plasma mass spectrometry for V and Ni quantification as tetrapyrroles</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Duyck, Christiane Béatrice; Saint'Pierre, Tatiana Dillenburg; Miekeley, Norbert; da Fonseca, Teresa Cristina Oliveira; Szatmari, Peter</p> <p>2011-05-01</p> <p>A method was developed for the determination of V and Ni as tetrapyrroles by High Performance Liquid Chromatography hyphenated to Inductively Coupled Plasma Mass Spectrometry (HPLC-ICP-MS) using reversed phase and elution gradient. Chlorinated solvents and tetrahydrofuran were investigated as regard to separation time and ICP-MS detection efficiencies. The final elution gradient program started from pure methanol to a mixture of 20:80 (v/v) chloroform:methanol. External quantification of V and Ni with inorganic standards by flow injection ICP-MS, used online with HPLC, resulted in 95% of recoveries. The Limits of Detection for V during methanol elution and for Ni during the 20% chloroform gradient elution were evaluated by their minimum detectable concentrations, which were, respectively, 5 μg L - 1 and 8 μg L - 1 . The methodology was applied to polar and resin fractions separated from a Brazilian crude oil and a sediment extract from an oil-polluted area in the Guanabara Bay, Rio de Janeiro, Brazil. Vanadium as tetrapyrroles represented the totality of V content in the polar fraction, whereas Ni was in different polar forms in the resin and sediment extract.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EGUGA..14.8777B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EGUGA..14.8777B"><span>GOCE gravity gradient data for lithospheric modeling - From well surveyed to frontier areas</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bouman, J.; Ebbing, J.; Gradmann, S.; Fuchs, M.; Fattah, R. Abdul; Meekes, S.; Schmidt, M.; Lieb, V.; Haagmans, R.</p> <p>2012-04-01</p> <p>We explore how GOCE gravity gradient data can improve modeling of the Earth's lithosphere and thereby contribute to a better understanding of the Earth's dynamic processes. The idea is to invert satellite gravity gradients and terrestrial gravity data in the well explored and understood North-East Atlantic Margin and to compare the results of this inversion, providing improved information about the lithosphere and upper mantle, with results obtained by means of models based upon other sources like seismics and magnetic field information. Transfer of the obtained knowledge to the less explored Rub' al Khali desert is foreseen. We present a case study for the North-East Atlantic margin, where we analyze the use of satellite gravity gradients by comparison with a well-constrained 3D density model that provides a detailed picture from the upper mantle to the top basement (base of sediments). The latter horizon is well resolved from gravity and especially magnetic data, whereas sedimentary layers are mainly constrained from seismic studies, but do in general not show a prominent effect in the gravity and magnetic field. We analyze how gravity gradients can increase confidence in the modeled structures by calculating a sensitivity matrix for the existing 3D model. This sensitivity matrix describes the relation between calculated gravity gradient data and geological structures with respect to their depth, extent and relative density contrast. As the sensitivity of the modeled bodies varies for different tensor components, we can use this matrix for a weighted inversion of gradient data to optimize the model. This sensitivity analysis will be used as input to study the Rub' al Khali desert in Saudi Arabia. In terms of modeling and data availability this is a frontier area. Here gravity gradient data will be used to better identify the extent of anomalous structures within the basin, with the goal to improve the modeling for hydrocarbon exploration purposes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014JSAES..52...43D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014JSAES..52...43D"><span>Syn- and post-sedimentary controls on clay mineral assemblages in a tectonically active basin, Andean Argentinean foreland</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Do Campo, Margarita; Nieto, Fernando; del Papa, Cecilia; Hongn, Fernando</p> <p>2014-07-01</p> <p>In the northern part of the Calchaquí Valley (NW Argentina), Palaeogene Andean foreland sediments are represented by a 1400-metre-thick continental succession (QLC: Quebrada de Los Colorados Formation) consisting of claystones, siltstones, sandstones, and conglomerates representing sedimentation in fluvial-alluvial plains and alluvial fan settings. To understand the main syn- and postsedimentary variables controlling the clay mineral assemblages of this succession, we have studied the fine-grained clastic sediments by X-ray diffraction and electron microscopy, along with a detailed sedimentary facies analysis, for two representative sections. In the northern section, the whole succession was sampled and analysed by XRD, whereas in the second section, a control point 15 km to the south, only the basal levels were analysed. The XRD study revealed a strong contrast in clay mineral assemblages between these two sections as well as with sections in the central Calchaquí Valley studied previously. In the northernmost part of the study area, a complete evolution from smectite at the top to R3 illite/smectite mixed-layers plus authigenic kaolinite at the bottom, through R1-type mixed-layers in between, has been recognized, indicating the attainment of late diagenesis. In contrast, the clay mineral assemblages of equivalent foreland sediments cropping out only 15 km to the south contain abundant smectite and micas, subordinate kaolinite and chlorite, and no I/S mixed-layers to the bottom of the sequence. Early diagenetic conditions were also inferred in a previous study for equivalent sediments of the QLC Formation cropping out to the south, in the central Calchaquí Valley, as smectite occurs in basal strata. Burial depths of approximately 3000 m were estimated for the QLC Formation in the central and northern Calchaquí Valley; in addition, an intermediate to slightly low geothermal gradient can be considered likely for both areas as foreland basins are regarded as hypothermal basins. Consequently, the attainment of late diagenesis in the northernmost study area cannot be explained by significant differences in burial depth nor in geothermal gradient in relation to the section 15 km to the south nor with the central Calchaquí Valley. The formation of R3 mixed-layer I/S and authigenic kaolinite in the northern study area was most likely controlled by the circulation of hot, deep fluids along the reverse faults that bounded the Calchaquí valley. These faults were active during the Cenozoic, as evidenced by the syndepositional deformation features preserved in the studied sediments. Stress could also have been a driving force in burial diagenesis at the R3 mixed-layer I/S stage in these young continental sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015AGUFMEP51B0910K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015AGUFMEP51B0910K"><span>Response and Recovery of Streams From an Extreme Flood</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kantack, K. M.; Renshaw, C. E.; Magilligan, F. J.; Dethier, E.</p> <p>2015-12-01</p> <p>In temperate regions, channels are expected to recover from intense floods in a matter of months to years, but quantitative empirical support for this idea remains limited. Moreover, existing literature fails to address the spatial variability of the recovery process. Using an emerging technology, we investigate the immediate response to and progressive recovery of channels in the Northeastern United States from an extreme flood. We seek to determine what factors, including the nature and extent of the immediate response of the channel to the flood and post-flood availability of sediment, contribute to the spatial variability of the rate of recovery. Taking advantage of the 2011 flooding from Tropical Storm Irene, for which pre- and post-flood aerial lidar exist, along with a third set of terrestrial lidar collected in 2015, we assess channel response and recovery with multi-temporal lidar comparison. This method, with kilometers of continuous data, allows for analysis beyond traditional cross-section and reach-scale studies. Results indicate that landscape-scale factors, such as valley morphology and gradients in unit stream power, are controls on channel response to the flood, producing spatially variable impacts. Along a 16.4-km section (drainage area = 82 km2) of the Deerfield River in Vermont, over 148,000 m3 or erosion occurred during the flood. The spatial variation of impacts was correlated (R2= 0.476) with the ratio of channel width to valley width. We expect the recovery process will similarly exhibit spatial variation in rate and magnitude, possibly being governed by gradients in unit stream power and sediment availability. We test the idea that channel widening during the flood reduces post-flood unit stream power, creating a pathway for deposition and recovery to pre-flood width. Flood-widened reaches downstream of point-sources of sediment, such as landslides, will recover more quickly than those without consistent sediment supply. Results of this study will improve our ability to predict the nature and location of flood impacts and determine what factors contribute to the spatial variability of channel recovery.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/of/2009/1029/','USGSPUBS'); return false;" href="https://pubs.usgs.gov/of/2009/1029/"><span>Coastal Processes Study of Santa Barbara and Ventura Counties, California</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Barnard, Patrick L.; Revell, David L.; Hoover, Dan; Warrick, Jon; Brocatus, John; Draut, Amy E.; Dartnell, Pete; Elias, Edwin; Mustain, Neomi; Hart, Pat E.; Ryan, Holly F.</p> <p>2009-01-01</p> <p>The Santa Barbara littoral cell (SBLC) is a complex coastal system with significant management challenges. The coastline ranges broadly in exposure to wave energy, fluvial inputs, hard structures, and urbanization. Geologic influence (structural control) on coastline orientation exerts an important control on local beach behavior, with anthropogenic alterations and the episodic nature of sediment supply and transport also playing important roles. Short- and long-term temporal analyses of shoreline change, beach width, and volume change show no obvious trends in regional beach behavior. Extensive armoring along the SBLC has accreted the back beach, narrowing beach widths and in some cases increasing sediment transport. Unarmored beaches have exhibited mild erosion while maintaining similar widths. Harbor constructions have had notable impacts on downdrift beaches, but once the coastal system has equilibrated the signal becomes strongly dampened and littoral-drift gradients driven by natural shoreline orientation again become dominant. Sediment inputs from the Santa Clara River dominate sediment processes on beaches to the south. The SBLC is dominated by episodic flood and storm-wave events. Exceptionally large accretion signals along this stretch of coastline are closely tied to major flood events when large amounts of sediment are deposited in deltas. These deltas decay over time, supplying downdrift beaches with sediment. Storm-wave impacts and gradients in alongshore transport can lead to beach rotations and migrating erosion hotspots when geological controls are weak. Annual and seasonal rates of cross-shore and alongshore transport are at least 2-3 times higher for the more west- and southwest-facing beaches south of the Ventura River as compared to the more sheltered beaches to the west/north. Gross littoral transports are good approximations of net littoral transports for beaches west/north of Ventura as transport is almost purely unidirectional. However, significant transport reversals occur intermittently in the east/south, especially adjacent to the Ventura and Channel Islands Harbors. For this reason, and due to the episodic nature of flood and storm wave events, using dredging rates from the harbors at Ventura and Channel Islands as a proxy for drift rates may be invalid. An extensive grain-size investigation of the surface and shallow subsurface in the nearshore region of the SBLC identified only two sites for potential beach-nourishment material: offshore of Santa Barbara Harbor and Oil Piers. However, seismic-reflection lines offshore of Santa Barbara suggest shallow bedrock (< 1 m), so the volume of coarse material in this area may be limited. Sampling of the Santa Clara River delta was minimal, but this site could be promising. Numerical modeling shows that local beach behavior is primarily influenced by local littoral-drift gradients, which are in turn controlled by natural shoreline orientation. Given the high rates of net littoral drift and the relatively insignificant cross-shore transport in the SBLC, the SBLC should be considered a sediment-limited system (as opposed to a transport-limited system). Management actions, such as any future beach nourishment, would likely have a severely limited life span without employing additional measures that adequately address local littoral-drift gradients to retain added sand.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70031718','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70031718"><span>Microbial sulfate reduction and metal attenuation in pH 4 acid mine water</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Church, C.D.; Wilkin, R.T.; Alpers, Charles N.; Rye, R.O.; Blaine, R.B.</p> <p>2007-01-01</p> <p>Sediments recovered from the flooded mine workings of the Penn Mine, a Cu-Zn mine abandoned since the early 1960s, were cultured for anaerobic bacteria over a range of pH (4.0 to 7.5). The molecular biology of sediments and cultures was studied to determine whether sulfate-reducing bacteria (SRB) were active in moderately acidic conditions present in the underground mine workings. Here we document multiple, independent analyses and show evidence that sulfate reduction and associated metal attenuation are occurring in the pH-4 mine environment. Water-chemistry analyses of the mine water reveal: (1) preferential complexation and precipitation by H2S of Cu and Cd, relative to Zn; (2) stable isotope ratios of 34S/32S and 18O/16O in dissolved SO4 that are 2-3 ??? heavier in the mine water, relative to those in surface waters; (3) reduction/oxidation conditions and dissolved gas concentrations consistent with conditions to support anaerobic processes such as sulfate reduction. Scanning electron microscope (SEM) analyses of sediment show 1.5-micrometer, spherical ZnS precipitates. Phospholipid fatty acid (PLFA) and denaturing gradient gel electrophoresis (DGGE) analyses of Penn Mine sediment show a high biomass level with a moderately diverse community structure composed primarily of iron- and sulfate-reducing bacteria. Cultures of sediment from the mine produced dissolved sulfide at pH values near 7 and near 4, forming precipitates of either iron sulfide or elemental sulfur. DGGE coupled with sequence and phylogenetic analysis of 16S rDNA gene segments showed populations of Desulfosporosinus and Desulfitobacterium in Penn Mine sediment and laboratory cultures. ?? 2007 Church et al; licensee BioMed Central Ltd.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70024507','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70024507"><span>The Saguenay Fjord, Quebec, Canada: Integrating marine geotechnical and geophysical data for spatial seismic slope stability and hazard assessment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Urgeles, R.; Locat, J.; Lee, H.J.; Martin, F.</p> <p>2002-01-01</p> <p>In 1996 a major flood occurred in the Saguenay region, Quebec, Canada, delivering several km3 of sediment to the Saguenay Fjord. Such sediments covered large areas of the, until then, largely contaminated fjord bottom, thus providing a natural capping layer. Recent swath bathymetry data have also shown that sediment landslides are widely present in the upper section of the Saguenay Fjord, and therefore, should a new event occur, it would probably expose the old contaminated sediments. Landslides in the Upper Saguenay Fjord are most probably due to earthquakes given its proximity to the Charlevoix seismic region and to that of the 1988 Saguenay earthquake. In consequence, this study tries to characterize the permanent ground deformations induced by different earthquake scenarios from which shallow sediment landslides could be triggered. The study follows a Newmark analysis in which, firstly, the seismic slope performance is assessed, secondly, the seismic hazard analyzed, and finally an evaluation of the seismic landslide hazard is made. The study is based on slope gradients obtained from EM1000 multibeam bathymetry data as well as water content and undrained shear strength measurements made in box and gravity cores. Ground motions integrating local site conditions were simulated using synthetic time histories. The study assumes the region of the 1988 Saguenay earthquake as the most likely source area for earthquakes capable of inducing large ground motions in the Upper Saguenay region. Accordingly, we have analyzed several shaking intensities to deduce that generalized sediment displacements will begin to occur when moment magnitudes exceed 6. Major displacements, failure, and subsequent landslides could occur only from earthquake moment magnitudes exceeding 6.75. ?? 2002 Elsevier Science B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2211471','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2211471"><span>Microbial sulfate reduction and metal attenuation in pH 4 acid mine water</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Church, Clinton D; Wilkin, Richard T; Alpers, Charles N; Rye, Robert O; McCleskey, R Blaine</p> <p>2007-01-01</p> <p>Sediments recovered from the flooded mine workings of the Penn Mine, a Cu-Zn mine abandoned since the early 1960s, were cultured for anaerobic bacteria over a range of pH (4.0 to 7.5). The molecular biology of sediments and cultures was studied to determine whether sulfate-reducing bacteria (SRB) were active in moderately acidic conditions present in the underground mine workings. Here we document multiple, independent analyses and show evidence that sulfate reduction and associated metal attenuation are occurring in the pH-4 mine environment. Water-chemistry analyses of the mine water reveal: (1) preferential complexation and precipitation by H2S of Cu and Cd, relative to Zn; (2) stable isotope ratios of 34S/32S and 18O/16O in dissolved SO4 that are 2–3 ‰ heavier in the mine water, relative to those in surface waters; (3) reduction/oxidation conditions and dissolved gas concentrations consistent with conditions to support anaerobic processes such as sulfate reduction. Scanning electron microscope (SEM) analyses of sediment show 1.5-micrometer, spherical ZnS precipitates. Phospholipid fatty acid (PLFA) and denaturing gradient gel electrophoresis (DGGE) analyses of Penn Mine sediment show a high biomass level with a moderately diverse community structure composed primarily of iron- and sulfate-reducing bacteria. Cultures of sediment from the mine produced dissolved sulfide at pH values near 7 and near 4, forming precipitates of either iron sulfide or elemental sulfur. DGGE coupled with sequence and phylogenetic analysis of 16S rDNA gene segments showed populations of Desulfosporosinus and Desulfitobacterium in Penn Mine sediment and laboratory cultures. PMID:17956615</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4547334','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4547334"><span>Variable-Field Analytical Ultracentrifugation: I. Time-Optimized Sedimentation Equilibrium</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Ma, Jia; Metrick, Michael; Ghirlando, Rodolfo; Zhao, Huaying; Schuck, Peter</p> <p>2015-01-01</p> <p>Sedimentation equilibrium (SE) analytical ultracentrifugation (AUC) is a gold standard for the rigorous determination of macromolecular buoyant molar masses and the thermodynamic study of reversible interactions in solution. A significant experimental drawback is the long time required to attain SE, which is usually on the order of days. We have developed a method for time-optimized SE (toSE) with defined time-varying centrifugal fields that allow SE to be attained in a significantly (up to 10-fold) shorter time than is usually required. To achieve this, numerical Lamm equation solutions for sedimentation in time-varying fields are computed based on initial estimates of macromolecular transport properties. A parameterized rotor-speed schedule is optimized with the goal of achieving a minimal time to equilibrium while limiting transient sample preconcentration at the base of the solution column. The resulting rotor-speed schedule may include multiple over- and underspeeding phases, balancing the formation of gradients from strong sedimentation fluxes with periods of high diffusional transport. The computation is carried out in a new software program called TOSE, which also facilitates convenient experimental implementation. Further, we extend AUC data analysis to sedimentation processes in such time-varying centrifugal fields. Due to the initially high centrifugal fields in toSE and the resulting strong migration, it is possible to extract sedimentation coefficient distributions from the early data. This can provide better estimates of the size of macromolecular complexes and report on sample homogeneity early on, which may be used to further refine the prediction of the rotor-speed schedule. In this manner, the toSE experiment can be adapted in real time to the system under study, maximizing both the information content and the time efficiency of SE experiments. PMID:26287634</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2006GeCoA..70.4933Z','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2006GeCoA..70.4933Z"><span>Two-dimensional pH distributions and dynamics in bioturbated marine sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Zhu, Qingzhi; Aller, Robert C.; Fan, Yanzhen</p> <p>2006-10-01</p> <p>The seafloor is the site of intense biogeochemical and mineral dissolution-precipitation reactions which generate strong gradients in pH near the sediment-overlying water interface. These gradients are usually measured in one-dimension vertically with depth. Two-dimensional pH distributions in marine sediments were examined at high resolution (65 × 65 μm pixel) and analytical precision over areas of ˜150 to 225 cm 2 using a newly developed pH planar fluorosensor. Dramatic three-dimensional gradients, complex heterogeneity, and dynamic changes of pH occur in the surficial zone of deposits inhabited by macrofauna. pH can vary by ±2 units horizontally as well as vertically over millimeter scales. pH minima zones often form in association with redoxclines within a few millimeters of inner burrow walls, and become more pronounced with time if burrows remain stable and irrigated for extended periods. Microenvironmental pH minima also form locally around decaying biomass and relict burrow tracks, and dissipate with time (˜5 d). H + concentrations and fluxes in sandy mud show complex acid-base reaction distributions with net H + fluxes around burrows up to ˜12 nmol cm -2 d -1 and maximum net reaction rates varying between -90 (consumption) to 120 (production) μM d -1 (˜90 nmol cm -1 d -1 burrow length). Acid producing zones that surround irrigated burrows are largely balanced by acid titration zones along inner burrow walls and outer radial boundaries. The geometry and scaling of pH microenvironments are functions of diagenetic reaction rates and three-dimensional transport patterns determined by sediment properties, such as diffusive tortuosity, and by benthic community characteristics such as the abundance, mobility, and size of infauna. Previously, undocumented biogeochemical phenomena such as low pH regions associated with in-filled relict biogenic structures and burrowing tracks are readily demonstrated by two-dimensional and time-dependent images of pH and sedimentary structure.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMOS44B..01L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMOS44B..01L"><span>Heat flow in the flanks of the Oceanographer-Hayes segment of the Mid-Atlantic Ridge</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Le Gal, V.; Lucazeau, F.; Cannat, M.; Battani, A.; Poort, J.; Guichet, X.; Monnin, C.; Fontaine, F. J.; Leroy, S. D.</p> <p>2016-12-01</p> <p>It is currently estimated that a third of the oceanic heat loss is due to fluid circulation in the oceanic crust. Besides high and low temperature fluid discharge at ridge axis, off-axis low temperature fluid circulations can affect large volumes of the oceanic crust. Long term investigations of the Eastern Juan de Fuca ridge flank (Hutnak et al.2006) have established a circulation pattern where hydrothermal discharge and recharge occur at basement outcrops and where sediment is mostly impermeable. Here, we present results from the recent Oceanograflu cruise (2013), on the Oceanographer-Hayes segment ridge flanks of the Mid-Atlantic ridge in crust 5 and 12 myrs in age. On both flanks, we obtained 185 temperature gradients and conductivities in-situ, 30 Küllenberg cores (3 to 5 meters long) coupled with temperature gradients in-situ and conductivity measurements onboard. These data are interpreted in terms of heat flow values and are generally lower than the conductive cooling model. Several temperature-depth profiles don't show linear gradients, but rather sigmoid shapes or inverse gradients suggesting superficial circulations through the first meters of sediments. The corresponding heat flow pattern is not similar to the one observed at Juan de Fuca. No systematic links have been observed between basement outcrops and lower or higher heat flow which would point to discharge or recharge sites. Instead, the pattern recalls studies in the North Pond area (Langseth et al.1992), with a clear predominance of low heat flow values over the site. We propose that the North Pond circulation model is applicable to large portions of slow-spreading ridge flanks such as the Atlantic. In this model, seawater cools the uppermost crust below sediments in basins that are typically tens of kms wide, reducing the surface heat flow under cooling model values. Based on subsidence rates, these shallow hydrothermal circulations have a minor impact on the cooling of the diverging plates.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013AGUFM.H33I..07K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013AGUFM.H33I..07K"><span>Groundwater/Seawater Exchange over Multiple Time Scales: Two Years of High-Frequency Data from the Coastal Seabed</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Karam, H. N.; Mulligan, A. E.; Abarca, E.; Gardner, A.; Hemond, H.; Harvey, C. F.</p> <p>2013-12-01</p> <p>We present time series of vertical pressure gradients in the sea floor at Waquoit Bay, MA, collected along a transect of locations perpendicular to shore, with a 10-minute resolution over two years. The custom-made instruments used for data collection measure pressure differences with an accuracy of 0.5 mm freshwater head, and record pore water and surface water salinities, allowing a robust calculation of the direction and magnitude of flux across the sediment-water interface given an estimate of sediment permeability. Distinct processes of seawater circulation in the subsurface driven by different forcings, including storms, tides, variations in fresh groundwater head, and salinity gradients in coastal groundwater, are manifest as different frequency components in the time series. We characterize the relative contributions of these different forcings to seafloor fluxes at our site, as a function of the time of year and the distance from shore. We find that: 1) Sea level variations drive variations in seafloor flux at time scales of hours to weeks, around a mean flux that is produced by processes with longer time scales, including the seasonal cycle in fresh groundwater head and the density-driven circulation of seawater through the coastal aquifer. 2) Seafloor flux responds non-linearly to shifts in seawater level. Furthermore, this response is asymmetric, with very low tides producing an amplified response in submarine groundwater discharge relative to the recharge produced by equivalently high tides. 3) The amplitude of seafloor pressure gradients shows a three-fold increase during winters relative to summers. We present a model to explain this effect based on the increase in shallow pore water viscosity at colder temperatures. We generalize our findings to help guide the design of sampling studies of seafloor fluxes at other sites. Finally, we present the distribution of subsurface residence times for seawater in Waquoit Bay, derived from our pressure gradient data sets, and discuss the implications for surface water and sediment chemistry.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008AGUFMPP33C1575X','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008AGUFMPP33C1575X"><span>Eastern Equatorial Pacific Dust Provenance on Deglacial Timescales</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Xie, R.; Marcantonio, F.</p> <p>2008-12-01</p> <p>Changing patterns of eolian dust deposition preserved in deep-sea sediments have the potential to provide us with a better understanding of changes in past atmospheric circulation. One way in which to determine the provenance of dust in deep-sea sediments is to use radiogenic isotopic tracers which can fingerprint potential dust sources. Models (e.g., [1]) suggest that sources of dust to the Eastern Equatorial Pacific (EEP) are from areas as diverse as Asia, North, Central, and South America, and, perhaps, even Africa. Here, we investigate spatial and temporal changes in the provenance of the eolian component in the EEP by measuring Pb, Sr, and Nd isotope ratios in dust extracted from sediments along a transect at 110oW from 7oN to 3oS (ODP sites 853 - 848). In this region, although fluxes of dust were higher during the last glacial maximum (LGM) than those in the Holocene by up to 100%, the glacial flux of dust displayed a shallower meridional gradient [2]. However, it is unclear whether this shallower gradient is due to a mean southerly displacement of the Intertropical Convergence Zone (ITCZ). Most of the dust trying to pass through the ITCZ will be scavenged and rained out at the ITCZ. Along the meridional gradient, therefore, temporal variations in the Pb, Sr, and Nd isotopic fingerprints of the distinct dust sources will determine the extent to which the position of the ITCZ changes on deglacial timescales. [1] Mahowald et al., 2005, Global Biogeochemical Cycles 19, GB4025. [2] McGee et al., 2007, EPSL 257, 215-230.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1982DSRA...29..535M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1982DSRA...29..535M"><span>Erosion and deposition on the eastern margin of the Bermuda Rise in the late Quaternary</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>McCave, I. N.; Hollister, C. D.; Laine, E. P.; Lonsdale, P. F.; Richardson, M. J.</p> <p>1982-05-01</p> <p>A near-bottom survey has been made on the Eastward Scarp (32°50'N, 57°30'W) of the Bermuda Rise, which rises 1150 m above the 5500-m deep Sohm Abyssal Plain in the western North Atlantic. The survey reveals evidence of erosion and deposition at present and in the late Quaternary by the deeper levels of the westward flowing Gulf Stream Return Flow. Four distinct regions of increasing bed gradient show increasing sediment smoothing and scour in the transition from plateau to abyssal plain. Bedforms observed are current crescents, crag and tail, triangular ripples, elongate mounds, transverse mud ripples, lineations, and furrows ranging from 10 to 1 m or less in depth, decreasing generally with bed gradient. Measured near-bottom current speeds are up to 20 cm s -1. Temperature structure on the lower, steep, slopes suggests that detachment of bottom mixed layers may occur there. Extensive net erosion appears to be confined to the lower steep slopes of the scarp. Reflection profiles (4 kHz) show that there has been erosion in areas thinly draped with recent sediments and in areas that show development of small scarps. The distribution of subsurface acoustic characteristics of the region corresponds broadly to the areas characterized by bed gradient and distinct sedimentation conditions. Subsurface hyperbolae, possibly caused by buried furrows, show furrow persistence through several tens of metres of deposition. Erosion occurs up to the top of the scarp during episodes of presumed stronger currents, which may correspond with intensified circulation during glacials.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA495507','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA495507"><span>An Integrated Approach to Understand Relationships Between Shallow Water Benthic Community Structure and Ecosystem Function</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2008-11-01</p> <p>water, sediment, and benthos along a gradient of disturbance intensity: Adaptive responses of the sediment feeders. Archives of Hydrobiology 127...0.13 8 Mollusca: Gastropoda Acetocina canaliculata 0.38 0.26 8 Mollusca: Gastropoda Acteon punctostriatus 0.13 0.13 8 Mollusca: Gastropoda Gastropod sp... Gastropod sp. 3 0.13 0.13 8 Mollusca: Gastropoda Gastropoda 0.38 0.26 8 Mollusca: Gastropoda Skeneopsis planorbis 0.13 0.13 8 Nemertea Nemertean sp. 1</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/876023','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/876023"><span>Rapid screening for plasmid DNA.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hughes, C; Meynell, G G</p> <p>1977-03-07</p> <p>A procedure is described for demonstrating plasmid DNA and its molecular weight, based on rate zonal centrifugation of unlabelled DNA in neutral sucrose gradients containing a low concentration of ethidium bromide. Each DNA species is then visualized as a discrete fluorescent band when the centrifuge tube is illuminated with ultra-violet light. Plasmids exist as closed circular and as relaxed circular molecules, which sediment separately, but during preparation of lysates, closed circular molecules are nicked so that each plasmid forms only a single band of relaxed circles within the gradient.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61164&keyword=coastal+AND+erosion&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61164&keyword=coastal+AND+erosion&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>ZOSTERA MARINA IN A PACIFIC NORTHWEST ESTUARY: WHAT FACTORS CONTROL INTERTIDAL DISTRIBUTION?</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>The impact of four factors (desiccation, macroalgae, erosion, light) on the distribution of Zostera marina was examined across tidal and bathymetric slope gradients. Data detailing seagrass characteristics, including 1 production, macroalgae biomass and sediment characteristics ...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70036370','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70036370"><span>Distribution, behavior, and transport of inorganic and methylmercury in a high gradient stream</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Flanders, J.R.; Turner, R.R.; Morrison, T.; Jensen, R.; Pizzuto, J.; Skalak, K.; Stahl, R.</p> <p>2010-01-01</p> <p>Concentrations of Hg remain elevated in physical and biological media of the South River (Virginia, USA), despite the cessation of the industrial use of Hg in its watershed nearly six decades ago, and physical characteristics that would not seem to favor Hg(II)-methylation. A 3-a study of inorganic Hg (IHg) and methylmercury (MeHg) was conducted in physical media (soil, sediment, surface water, porewater and soil/sediment extracts) to identify non-point sources, transport mechanisms, and potential controls on Hg(II)-methylation. Data collected from surface water and sediment indicate that the majority of the non-point sources of IHg to the South River are within the first 14. km downstream from the historic point source. Partitioning data indicate that particle bound IHg is introduced in this reach, releasing dissolved and colloidal bound IHg, which is transported downstream. Extraction experiments revealed that floodplain soils released a higher fraction of their IHg content in aqueous extractions than fine-grained sediment (FGS). Based on ultrafiltration [<5000 nominal molecular weight cutoff (NMWC)] the majority of soil IHg released was colloidal in nature, providing evidence for the continued evolution of IHg for Hg(II)-methylation from soil. Strong seasonal patterns in MeHg concentrations were observed in surface water and sediment. The highest concentrations of MeHg in surface water were observed at moderate temperatures, suggesting that other factors limit net Hg(II)-methylation. Seasonal changes in sediment organic content and the fraction of 1. N KOH-extractable THg were also observed and may be important factors in controlling net Hg(II)-methylation rates. Sulfate concentrations in surface water are low and the evidence suggests that Fe reduction may be an important Hg(II)-methylation process. The highest sediment MeHg concentrations were observed in habitats with large amounts of FGS, which are more prevalent in the upper half of the study area due to the lower hydrologic gradient and agricultural impacts. Past and present land use practices and other geomorphologic controls contribute to the erosion of banks and accumulation of fine-grained sediment in this section of the river, acting as sources of IHg. ?? 2010 Elsevier Ltd.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29705824','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29705824"><span>Assessment of temporal and spatial water quality in international Gomishan Lagoon, Iran, using multivariate analysis.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Basatnia, Nabee; Hossein, Seyed Abbas; Rodrigo-Comino, Jesús; Khaledian, Yones; Brevik, Eric C; Aitkenhead-Peterson, Jacqueline; Natesan, Usha</p> <p>2018-04-29</p> <p>Coastal lagoon ecosystems are vulnerable to eutrophication, which leads to the accumulation of nutrients from the surrounding watershed over the long term. However, there is a lack of information about methods that could accurate quantify this problem in rapidly developed countries. Therefore, various statistical methods such as cluster analysis (CA), principal component analysis (PCA), partial least square (PLS), principal component regression (PCR), and ordinary least squares regression (OLS) were used in this study to estimate total organic matter content in sediments (TOM) using other parameters such as temperature, dissolved oxygen (DO), pH, electrical conductivity (EC), nitrite (NO 2 ), nitrate (NO 3 ), biological oxygen demand (BOD), phosphate (PO 4 ), total phosphorus (TP), salinity, and water depth along a 3-km transect in the Gomishan Lagoon (Iran). Results indicated that nutrient concentration and the dissolved oxygen gradient were the most significant parameters in the lagoon water quality heterogeneity. Additionally, anoxia at the bottom of the lagoon in sediments and re-suspension of the sediments were the main factors affecting internal nutrient loading. To validate the models, R 2 , RMSECV, and RPDCV were used. The PLS model was stronger than the other models. Also, classification analysis of the Gomishan Lagoon identified two hydrological zones: (i) a North Zone characterized by higher water exchange, higher dissolved oxygen and lower salinity and nutrients, and (ii) a Central and South Zone with high residence time, higher nutrient concentrations, lower dissolved oxygen, and higher salinity. A recommendation for the management of coastal lagoons, specifically the Gomishan Lagoon, to decrease or eliminate nutrient loadings is discussed and should be transferred to policy makers, the scientific community, and local inhabitants.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008GeoRL..3519306B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008GeoRL..3519306B"><span>Neural network analysis of crosshole tomographic images: The seismic signature of gas hydrate bearing sediments in the Mackenzie Delta (NW Canada)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bauer, K.; Pratt, R. G.; Haberland, C.; Weber, M.</p> <p>2008-10-01</p> <p>Crosshole seismic experiments were conducted to study the in-situ properties of gas hydrate bearing sediments (GHBS) in the Mackenzie Delta (NW Canada). Seismic tomography provided images of P velocity, anisotropy, and attenuation. Self-organizing maps (SOM) are powerful neural network techniques to classify and interpret multi-attribute data sets. The coincident tomographic images are translated to a set of data vectors in order to train a Kohonen layer. The total gradient of the model vectors is determined for the trained SOM and a watershed segmentation algorithm is used to visualize and map the lithological clusters with well-defined seismic signatures. Application to the Mallik data reveals four major litho-types: (1) GHBS, (2) sands, (3) shale/coal interlayering, and (4) silt. The signature of seismic P wave characteristics distinguished for the GHBS (high velocities, strong anisotropy and attenuation) is new and can be used for new exploration strategies to map and quantify gas hydrates.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li class="active"><span>19</span></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_19 --> <div id="page_20" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li class="active"><span>20</span></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="381"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018JOUC...17...83W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018JOUC...17...83W"><span>Submarine landslides on the north continental slope of the South China Sea</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wang, Weiwei; Wang, Dawei; Wu, Shiguo; Völker, David; Zeng, Hongliu; Cai, Guanqiang; Li, Qingping</p> <p>2018-02-01</p> <p>Recent and paleo-submarine landslides are widely distributed within strata in deep-water areas along continental slopes, uplifts, and carbonate platforms on the north continental margin of the South China Sea (SCS). In this paper, high-resolution 3D seismic data and multibeam data based on seismic sedimentology and geomorphology are employed to assist in identifying submarine landslides. In addition, deposition models are proposed that are based on specific geological structures and features, and which illustrate the local stress field over entire submarine landslides in deep-water areas of the SCS. The SCS is one of the largest fluvial sediment sinks in enclosed or semi-enclosed marginal seas worldwide. It therefore provides a set of preconditions for the formation of submarine landslides, including rapid sediment accumulation, formation of gas hydrates, and fluid overpressure. A new concept involving temporal and spatial analyses is tested to construct a relationship between submarine landslides and different time scale trigger mechanisms, and three mechanisms are discussed in the context of spatial scale and temporal frequency: evolution of slope gradient and overpressure, global environmental changes, and tectonic events. Submarine landslides that are triggered by tectonic events are the largest but occur less frequently, while submarine landslides triggered by the combination of slope gradient and over-pressure evolution are the smallest but most frequently occurring events. In summary, analysis shows that the formation of submarine landslides is a complex process involving the operation of different factors on various time scales.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70029997','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70029997"><span>Use of carboxylated microspheres to assess transport potential of Cryptosporidium parvum oocysts at the Russian River water supply facility, Sonoma County, California</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Metge, D.W.; Harvey, R.W.; Anders, R.; Rosenberry, D.O.; Seymour, D.; Jasperse, James</p> <p>2007-01-01</p> <p>Carboxylated microspheres were employed as surrogates to assess the transport potential of Cryptosporidium parvumoocysts during forced- and natural-gradient tests conducted in July and October 2004. The tests involved poorly-sorted, near-surface sediments where groundwater is pumped from an alluvial aquifer underlying the Russian River, Sonoma County, CA. In an off channel infiltration basin and within the river, a mixture (2-, 3-, and 5- ??m diameters) of fluorescently-labeled carboxylated microspheres and bromide tracers were used in two injection and recovery test to assess sediment removal efficiency for the microspheres. Bottom sediments varied considerably in their filtration efficiency for Cryptosporidium.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1234549','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1234549"><span>Floodplain sedimentology and sediment accumulation assessment – Savannah River Site</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Yeager, Kevin M.</p> <p>2016-01-03</p> <p>The primary goal of the larger research program, of which this work is one component, is to restore the hydrodynamics and energy gradients of targeted Savannah River Site (SRS) streams to a condition comparable to local natural streams or rivers of similar order, and to stabilize sediment transport (net degradation/aggregation) with the assumption that the faunal components of these systems will quickly recover on their own (e.g., Pen Branch; Lakly and McArthur, 2000). This work is specifically focused on the identification of near-stream floodplain areas that exhibit sediment deposition or erosion, and the quantification of these processes over a historicalmore » time scale (last ~100 years).« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016EGUGA..1813165M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016EGUGA..1813165M"><span>Dynamics of bedload size and rate during snow and glacier melting in a high-gradient Andean stream</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mao, Luca; Carrillo, Ricardo</p> <p>2016-04-01</p> <p>The evaluation and prediction of coarse sediment movement and transport is crucial for understanding and predicting fluvial morphodynamics, and for designing flood hazard mitigation structures and stream habitat restoration. At the scale of single flood event, the relationship between water discharge (Q) and bedload rate (Qs) often reveals hysteretic loops. If Qs peaks before Q the hysteresis is clockwise and this suggests a condition of unlimited sediment supply. In contrast, counterclockwise hysteresis would suggest limited sediment supply conditions. Understanding the direction and magnitude of hysteresis at the single flood event can thus reveal the sediment availability. Also, interpreting temporal trend of hysteresis could be used to infer the dynamics of sediment sources. This work is focused in the temporal trend of hysteresis pattern of bedload transport in a small (27 km2) glaciarized catchment in the Andes of central Chile (Estero Morales) from 2014 to 2015. Bedload is measured using a 0.5 m long Japanese acoustic pipe sensor fixed on the channel bed, which register the intensity of impulses generated by the impact of sediments on the sensor. Based on flume and field measurements, the sensor was calibrated as to provide intensity of transported sediments. Also, direct bedload samplings were taken within a range of 0.01 - 1000 g s-1 m-1) sediment transport rates, and allowed to assess median and maximum grain size of transported sediments. The analysis reveals that hysteresis at the scale of single flood tends to be clockwise during snowmelt and early glaciermelting, whereas counterclockwise hysteresis is dominant during the late glaciermelting. Also, bedload transport rates and grain size of transported sediments reduces progressively from early to late glaciermelting. Interestingly, direct bedload samplings revealed that grain size of transported sediments tends to exhibit a counterclockwise hysteresis when the sediment transport is clockwise. Thus during the snowmelt and early glaciermelting, sediment availability appears to be unlimited and hysteresis can be ascribed to pulses of sediments coming from the proglacial area. Instead, as the glaciermelting season progresses, sediment availability decreases probably due to the progressive exhaustion of sediments stored in the channel bed, and counterclockwise hysteresis can be ascribed to changes in the organization of the surface sediments at the scale of clusters. Results highlight the complex relationships between dynamics of sediment sources at the basin scale and changes in channel sediment storage overtime, resulting in abrupt changes in rate and size of sediment transport. Long-term assessment of these dynamics using indirect methods to assess bedload transport can provide important insights for understanding probable trajectories of morphological evolution of glacierized streams which are subject to rapid environmental changes. This research is being developed within the framework of Project FONDECYT 1130378.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=59570&Lab=NHEERL&keyword=fermentation&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=59570&Lab=NHEERL&keyword=fermentation&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>ACETOGENIC BACTERIA ASSOCIATED WITH SEAGRASS ROOTS</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Seagrasses are adapted to being rooted in reduced, anoxic sediments with high rates of sulfate reduction. During the day, an oxygen gradient is generated around the roots, becoming anoxic at night. Thus, obligate anaerobic bacteria in the rhizosphere have to tolerate elevated oxy...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFM.H23D0907W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFM.H23D0907W"><span>Fluid Exchange Across the Seafloor of the Continental Shelf in the South Atlantic Bight</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>White, S. M.; Wilson, A. M.; Moore, W. S.; Smoak, E. A.; George, C.</p> <p>2014-12-01</p> <p>Increasing evidence suggests that saline submarine groundwater discharges from the seafloor in volumes that rival river discharge, but this discharge occurs far from shore, spread regionally across the continental shelves. The very limited observational data suggest that saline discharge occurs via long-term regional flow systems and rapid flushing of porewaters from sandy sediment during storm events. This study aims to overcome the paucity of available observational constraints on characterizing regional-scale fluid exchange on passive margin continental shelves. We are developing a detailed hydrostratigraphic framework based on 200 km of CHIRP seismic lines 5-20 km offshore from Charleston, SC and 13 sediment cores up to 6.5 m long. This survey revealed varying thicknesses (0-15 m) of sediment overlying Cretaceous limestone basement, and a filled paleochannel fluvial system. We have installed 3 sets of nested wells and an additional 10 temperature-gradient arrays to observe a wide variety of environments across the shelf. The wells and thermal arrays have been recently installed in the upper 5 m of the sediment, to allow monitoring of pressure and temperature. The wells will also be sampled for Ra tracers and nutrient concentrations. The combination of wells and survey data will allow us to estimate rates of submarine groundwater discharge via hydraulic gradients and by using heat and geochemical tracers. We have developed a numerical model to invert thermal data to estimate both long-term regional groundwater flow and rapid flushing associated with storm events.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16221819','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16221819"><span>Reducing sediment and phosphorus in tributary waters with alum and polyacrylamide.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Mason, L B; Amrhein, C; Goodson, C C; Matsumoto, M R; Anderson, M A</p> <p>2005-01-01</p> <p>The Salton Sea is the largest inland water body in California, covering an area of 980 km(2). Inflow to the Salton Sea (1.6 km(3) yr(-1)) is predominately nutrient-rich agricultural wastewater, which has led to eutrophication. Because internal phosphorus release from the bottom sediments is comparatively low and external phosphorus loading to the Salton Sea is high, reduction of tributary phosphorus is expected to reduce algal blooms, increase dissolved oxygen, and reduce odors. Removing both dissolved phosphorus and phosphorus-laden sediment from agricultural drainage water (ADW) should decrease eutrophication. Both alum and polyacrylamide (PAM) are commonly used in wastewater treatment to remove phosphorus and sediment and were tested for use in tributary waters. Laboratory jar tests determined PAM effectiveness (2 mg L(-1)) for turbidity reduction as cationic > anionic = nonionic. Although cationic PAM was the most effective at reducing turbidity at higher speeds, there was no observed difference between the neutral and anionic PAMs at velocity gradients of 18 to 45 s(-1). Alum (4 mg L(-1) Al) reduced turbidity in low energy systems (velocity gradients < 10 s(-1)) by 95% and was necessary to reduce soluble phosphorus, which comprises 47 to 100% of the total P concentration in the tributaries. When PAM was added with alum, the anionic PAM became ineffective in aiding flocculation. The nonionic PAM (2 mg L(-1)) + alum (4 mg L(-1) Al) is recommended to reduce suspended solids in higher energy systems and reduce soluble P by 93%.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME34B0797R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME34B0797R"><span>Ecological Functioning in Two Mid-Atlantic Bight Submarine Canyons: Macrofauna Community Trends and the Role of Canyon Specific Processes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Robertson, C.; Bourque, J. R.; Davies, A. J.; Duineveld, G.; Mienis, F.; Brooke, S.; Ross, S. W.; Demopoulos, A. W.</p> <p>2016-02-01</p> <p>Submarine canyons are complex systems, acting as major conduits of organic matter along continental shelves and promoting gradients in food resources, turbidity flows, habitat heterogeneity, and areas of sediment resuspension and deposition. In the western North Atlantic, a large multidisciplinary program was conducted in two major Mid-Atlantic Bight (MAB) canyons (Baltimore and Norfolk canyons). This Atlantic Deepwater Canyons project was funded by BOEM, NOAA, and USGS. Here we investigate the `canyon effect' on benthic ecosystem ecology and functioning of two canyon systems by defining canyon specific processes influencing MAB shelf benthic community trends. Sediment cores were collected in 2012 and 2013 with a NIOZ box corer along the main axes ( 180-1200m) of Baltimore and Norfolk Canyon and at comparable depths on the adjacent continental slope. Whole community macrofaunal (>300 μm) abundance and biomass data provided insight into community trends across depth and biogeochemical gradients by coupling diversity metrics and biological trait analyses with sediment biogeochemistry and hydrodynamic data. The canyons exhibited clear differences in sediment profiles, hydrodynamic regimes and enrichment depocenters as well as significantly distinct infauna communities. Interestingly, both canyons showed bimodal distributions in abundances and diversity of infauna and a shallowing of species maxima which was not present on adjacent slopes. We hypothesize that physical canyon processes are important regulators in the depth of observed species maxima and community functioning on the MAB shelf, on local and regional scales. Unique sediment dynamics, organic enrichment, and hydrographic conditions were significant factors in structuring benthic community differences in MAB canyons The study provides a complete benthic infaunal appraisal of two canyon systems in the western Atlantic, incorporating biogeochemistry and oceanography to increase our understanding of canyon ecosystem ecology and provide baseline information on canyon functioning.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017ECSS..198..450K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017ECSS..198..450K"><span>Abundance, distribution and bioavailability of major and trace elements in surface sediments from the Cai River estuary and Nha Trang Bay (South China Sea, Vietnam)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Koukina, S. E.; Lobus, N. V.; Peresypkin, V. I.; Dara, O. M.; Smurov, A. V.</p> <p>2017-11-01</p> <p>Major (Si, Al, Fe, Ti, Mg, Ca, Na, K, S, P), minor (Mn) and trace (Li, V, Cr, Co, Ni, Cu, Zn, As, Sr, Zr, Mo, Cd, Ag, Sn, Sb, Cs, Ba, Hg, Pb, Bi and U) elements, their chemical forms and the mineral composition, organic matter (TOC) and carbonates (TIC) in surface sediments from the Cai River estuary and Nha Trang Bay were first determined along the salinity gradient. The abundance and ratio of major and trace elements in surface sediments are discussed in relation to the mineralogy, grain size, depositional conditions, reference background and SQG values. Most trace-element contents are at natural levels and are derived from the composition of rocks and soils in the watershed. A severe enrichment of Ag is most likely derived from metal-rich detrital heavy minerals such as Ag-sulfosalts. Along the salinity gradient, several zones of metal enrichment occur in surface sediments because of the geochemical fractionation of the riverine material. The parts of actually and potentially bioavailable forms (isolated by four single chemical reagent extractions) are most elevated for Mn and Pb (up to 36% and 32% of total content, respectively). The possible anthropogenic input of Pb in the region requires further study. Overall, the most bioavailable parts of trace elements are associated with easily soluble amorphous Fe and Mn oxyhydroxides. The sediments are primarily enriched with bioavailable metal forms in the riverine part of the estuary. Natural (such as turbidities) and human-generated (such as urban and industrial activities) pressures are shown to influence the abundance and speciation of potential contaminants and therefore change their bioavailability in this estuarine system.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70027247','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70027247"><span>Spatial and temporal changes in microbial community structure associated with recharge-influenced chemical gradients in a contaminated aquifer</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Haack, S.K.; Fogarty, L.R.; West, T.G.; Alm, E.W.; McGuire, J.T.; Long, D.T.; Hyndman, D.W.; Forney, L.J.</p> <p>2004-01-01</p> <p>In a contaminated water-table aquifer, we related microbial community structure on aquifer sediments to gradients in 24 geochemical and contaminant variables at five depths, under three recharge conditions. Community amplified ribsosomal DNA restriction analysis (ARDRA) using universal 16S rDNA primers and denaturing gradient gel electrophoresis (DGGE) using bacterial 16S rDNA primers indicated: (i) communities in the anoxic, contaminated central zone were similar regardless of recharge; (ii) after recharge, communities at greatest depth were similar to those in uncontaminated zones; and (iii) after extended lack of recharge, communities at upper and lower aquifer margins differed from communities at the same depths on other dates. General aquifer geochemistry was as important as contaminant or terminal electron accepting process (TEAP) chemistry in discriminant analysis of community groups. The Shannon index of diversity (H) and the evenness index (E), based on DGGE operational taxonomic units (OTUs), were statistically different across community groups and aquifer depths. Archaea or sulphate-reducing bacteria 16S rRNA abundance was not clearly correlated with TEAP chemistry indicative of methanogenesis or sulphate reduction. Eukarya rRNA abundance varied by depth and date from 0 to 13% of the microbial community. This contaminated aquifer is a dynamic ecosystem, with complex interactions between physical, chemical and biotic components, which should be considered in the interpretation of aquifer geochemistry and in the development of conceptual or predictive models for natural attenuation or remediation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016EGUGA..1814808J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016EGUGA..1814808J"><span>Reactive iron and manganese in estuarine sediments of the Baltic Sea: Impacts of flocculation and redox shuttling</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Jilbert, Tom; Tiihonen, Rosa; Myllykangas, Jukka-Pekka; Asmala, Eero; Hietanen, Susanna</p> <p>2016-04-01</p> <p>Iron (Fe) and manganese (Mn) play important roles in sedimentary carbon cycling in both freshwater and marine systems. Dissimilatory reduction of Fe and Mn oxides is known to be a major pathway of suboxic organic matter remineralization in surface sediments, while recent studies have shown that Fe and Mn oxides may be involved in the anaerobic oxidation of methane deeper in the sediment column (e.g., Egger et al., 2015). Estuaries are transitional environments, characterized by gradients of salinity and redox conditions which impact on the mobility of Fe and Mn. In turn, the distribution of Fe and Mn in estuarine sediments, and the role of the two metals in carbon cycling, is expected to be spatially heterogeneous. However, few studies have attempted to describe the sedimentary distribution of Fe and Mn in the context of processes occurring in the estuarine water column. In particular, salinity-driven flocculation and redox shuttling are two key processes whose relative impacts on sedimentary Fe and Mn have not been clearly demonstrated. In this study we investigated the coupled water column and sedimentary cycling of Fe and Mn along a 60km non-tidal estuarine transect in the Gulf of Finland, Baltic Sea. We show that riverine Fe entering the estuary as colloidal oxides associated with dissolved organic matter (DOM) is quickly flocculated and sedimented within 5 km of the river mouth, despite the shallow lateral salinity gradient. Sediments within this range are enriched in Fe (up to twice the regional average), principally in the form of crystalline Fe oxides as determined by sequential extractions. The high crystallinity implies relative maturity of the oxide mineralogy, likely due to sustained oxic conditions and long residence time in the river catchment. Despite the reducing conditions below the sediment-water interface, Fe is largely retained in the sediments close to the river mouth. In contrast, sedimentary Mn concentrations are highest in a deep silled basin more than 10km downstream. Throughout the estuary, Mn oxides are reductively dissolved shallower in the sediment column than Fe oxides, resulting in strong effluxes of dissolved Mn from the sediments. Subsequent oxidation of bottom water dissolved Mn to particulate oxides and lateral transport ("redox shuttling") account for the sedimentary Mn enrichments in the deep silled basin. Porewater data suggest that the heterogeneity of Fe and Mn availability in the estuarine sediments may influence the relative importance of the two metals for anaerobic oxidation of methane. Egger, M. et al., Environmental Science and Technology 49(1), 277-283, 2015.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.jstor.org/stable/4300070','USGSPUBS'); return false;" href="http://www.jstor.org/stable/4300070"><span>Bottom currents and sediment transport in Long Island Sound: A modeling study</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Signell, R.P.; List, J.H.; Farris, A.S.</p> <p>2000-01-01</p> <p>A high resolution (300-400 m grid spacing), process oriented modeling study was undertaken to elucidate the physical processes affecting the characteristics and distribution of sea-floor sedimentary environments in Long Island Sound. Simulations using idealized forcing and high-resolution bathymetry were performed using a three-dimensional circulation model ECOM (Blumberg and Mellor, 1987) and a stationary shallow water wave model HISWA (Holthuijsen et al., 1989). The relative contributions of tide-, density-, wind- and wave-driven bottom currents are assessed and related to observed characteristics of the sea-floor environments, and simple bedload sediment transport simulations are performed. The fine grid spacing allows features with scales of several kilometers to be resolved. The simulations clearly show physical processes that affect the observed sea-floor characteristics at both regional and local scales. Simulations of near-bottom tidal currents reveal a strong gradient in the funnel-shaped eastern part of the Sound, which parallels an observed gradient in sedimentary environments from erosion or nondeposition, through bedload transport and sediment sorting, to fine-grained deposition. A simulation of estuarine flow driven by the along-axis gradient in salinity shows generally westward bottom currents of 2-4 cm/s that are locally enhanced to 6-8 cm/s along the axial depression of the Sound. Bottom wind-driven currents flow downwind along the shallow margins of the basin, but flow against the wind in the deeper regions. These bottom flows (in opposition to the wind) are strongest in the axial depression and add to the estuarine flow when winds are from the west. The combination of enhanced bottom currents due to both estuarine circulation and the prevailing westerly winds provide an explanation for the relatively coarse sediments found along parts of the axial depression. Climatological simulations of wave-driven bottom currents show that frequent high-energy events occur along the shallow margins of the Sound, explaining the occurrence of relatively coarse sediments in these regions. Bedload sediment transport calculations show that the estuarine circulation coupled with the oscillatory tidal currents result in a net westward transport of sand in much of the eastern Sound. Local departures from this regional westward trend occur around topographic and shoreline irregularities, and there is strong predicted convergence of bedload transport over most of the large, linear sand ridges in the eastern Sound, providing a mechanism which prevents their decay. The strong correlation between the near-bottom current intensity based on the model results and the sediment response, as indicated by the distribution of sedimentary environments, provides a framework for predicting the long-term effects of anthropogenic activities.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014EGUGA..1612760M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014EGUGA..1612760M"><span>Vertical suspended sediment fluxes observed from a formation of underwater gliders</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Merckelbach, Lucas; Riethmueller, Rolf</p> <p>2014-05-01</p> <p>In order to understand and predict the pathways and deposition of fine sediments in coastal regions valid parameterisations of the fluxes across interfaces (sea bed - water column or a pycnocline) are paramount. Traditionally, these parameterisations are based on the concept of a critical shear stress, but more recently a probabilistic approach has been proposed, in which the resuspension of sediment is assumed to have a certain likelihood, depending on the external forcing. Both approaches find their justification, to some extent, from the results of laboratory experiments, however, in-situ data, essential for model validation, are scarce. In this study we develop a field method to estimate the (fine) sediment fluxes between the seabed and the water column, and across the pycnocline. The method is applied to a stratified shallow sea (the North Sea in Summer). In order to assess the results, these fluxes are interpreted in terms of bottom shear stress and current shear between upper and lower layer, respectively. The method was tested in an experiment with two underwater gliders in Summer 2013 in the German Bight. Both gliders were equipped with optical backscatter sensors, the measurements of which serve as a proxy for suspended sediment concentration. The profiling character of the gliders allows to calculate the rate of change of the layer-averaged sediment concentration, as observed by the platform. The local, Lagrangian rate of change of sediment concentration is the balance between the fluxes across the layer's interfaces. Due to a horizontal speed of the glider of about 0.5 m/s, horizontal gradients in sediment concentration cause the observed and the local rate of change of sediment concentration to be significantly different. The novelty of this experiment was that the two gliders were flown in a rigid formation, where one glider trailed the other at a more or less constant distance of 5 km, controlled by an algorithm. This allowed the local rate of change to be quantified - and therefore the net fluxes across the interfaces - by accounting for the effects of horizontal gradients. The validity of this method was assessed by comparing the settling and resuspension/entrainment fluxes with physical drivers: current shear near the pycnocline and bottom shear, with wind effects and tidal motion as proxies, respectively.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008ECSS...78..763U','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008ECSS...78..763U"><span>Benthic Foraminifera as ecological indicators for water quality on the Great Barrier Reef</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Uthicke, Sven; Nobes, Kristie</p> <p>2008-07-01</p> <p>Benthic foraminifera are established indicators for Water Quality (WQ) in Florida and the Caribbean. However, nearshore coral reefs of the Great Barrier Reef (GBR) and other Pacific regions are also subjected to increased nutrient and sediment loads. Here, we investigate the use of benthic foraminifera as indicators to assess status and trends of WQ on GBR reefs. We quantified several sediment parameters and the foraminiferan assemblage composition on 20 reefs in four geographic regions of the GBR, and along a water column nutrient and turbidity gradient. Twenty-seven easily recognisable benthic foraminiferan taxa (>63 μm) were distinguished. All four geographic regions differed significantly ( p < 0.05, ANOSIM) in their assemblage composition, and a redundancy analysis (RDA) showed that sediment parameters only explained a small proportion of the variance in the assemblage composition. On nine reefs along a previously studied water quality gradient, foraminifera showed a distinct shift in assemblage composition towards larger symbiont-bearing taxa from turbid inner shelf towards clearer outer shelf reefs. A RDA separated symbiotic and aposymbiotic (heterotrophic) taxa. In addition, total suspended solid and water column chlorophyll a concentrations were negatively correlated, and optical depth and distance to the mainland were positively correlated, with the abundance of symbiont-bearing taxa. Several large foraminifera were identified as indicators for offshore, clear water conditions. In contrast, heterotrophic rotaliids and a species retaining plastids ( Elphidium sp.) where highly characteristic for low light, higher nutrient conditions. Application of the FORAM index to GBR assemblage composition showed a significant increase in the value of this index with increased distance from the mainland in the Whitsunday region ( r2 = 0.75, p < 0.001), and therefore with increasing light and decreased nutrient availability. We conclude that it will be possible to apply this index to GBR and possibly other Pacific reefs after some adaptations and additional experimental work on species-specific limiting factors.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26942608','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26942608"><span>Environmental Drivers of Benthic Flux Variation and Ecosystem Functioning in Salish Sea and Northeast Pacific Sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Belley, Rénald; Snelgrove, Paul V R; Archambault, Philippe; Juniper, S Kim</p> <p>2016-01-01</p> <p>The upwelling of deep waters from the oxygen minimum zone in the Northeast Pacific from the continental slope to the shelf and into the Salish Sea during spring and summer offers a unique opportunity to study ecosystem functioning in the form of benthic fluxes along natural gradients. Using the ROV ROPOS we collected sediment cores from 10 sites in May and July 2011, and September 2013 to perform shipboard incubations and flux measurements. Specifically, we measured benthic fluxes of oxygen and nutrients to evaluate potential environmental drivers of benthic flux variation and ecosystem functioning along natural gradients of temperature and bottom water dissolved oxygen concentrations. The range of temperature and dissolved oxygen encountered across our study sites allowed us to apply a suite of multivariate analyses rarely used in flux studies to identify bottom water temperature as the primary environmental driver of benthic flux variation and organic matter remineralization. Redundancy analysis revealed that bottom water characteristics (temperature and dissolved oxygen), quality of organic matter (chl a:phaeo and C:N ratios) and sediment characteristics (mean grain size and porosity) explained 51.5% of benthic flux variation. Multivariate analyses identified significant spatial and temporal variation in benthic fluxes, demonstrating key differences between the Northeast Pacific and Salish Sea. Moreover, Northeast Pacific slope fluxes were generally lower than shelf fluxes. Spatial and temporal variation in benthic fluxes in the Salish Sea were driven primarily by differences in temperature and quality of organic matter on the seafloor following phytoplankton blooms. These results demonstrate the utility of multivariate approaches in differentiating among potential drivers of seafloor ecosystem functioning, and indicate that current and future predictive models of organic matter remineralization and ecosystem functioning of soft-muddy shelf and slope seafloor habitats should consider bottom water temperature variation. Bottom temperature has important implications for estimates of seasonal and spatial benthic flux variation, benthic-pelagic coupling, and impacts of predicted ocean warming at high latitudes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP43A1872S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP43A1872S"><span>Premature Mobility of Boulders in Constructed Step-pool River Structures in the Carmel River, CA: The Role of Fish-centric Design Constraints, and Flow on Structural Stability</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Smith, D. P.; Chow, K.; Luna, L.</p> <p>2017-12-01</p> <p>The 32 m tall San Clemente Dam (Carmel River, CA) was removed in 2015 to eliminate seismic risk and to improve fish passage for all life stages of steelhead (O. mykiss). Reservoir sediment was sequestered in place, rather than released, and a new 1000 m long channel/floodplain system was constructed to circumvent the stored sediment. The channel comprised a 250 m long, meandering low-gradient reach and a 750 m reach with alternating step-pool sections, plane beds, and resting pools. The floodprone surfaces were compacted, wrapped in geotechnical fabric and vegetated. This study analyzes the geomorphic evolution of the new channel system during its first two years of service based upon detailed field inspection, SfM photogrammetry, orthophoto analysis, and 2d hydraulic modeling. A significant proportion of the step-pool structures experienced premature mobility and several reaches of engineered stream banks were eroded in the first year. Individual, six-tonne boulders were mobilized despite experiencing less than the 3 yr flow. The channel and floodplain were fully repaired following the first year. Strong flows (two 10-yr floods and a 30-yr flood) during the second year catastrophically altered the constructed channel and floodplain. While the low-gradient reach remained intact, each of the original step-pool structures was either completely mobilized and destroyed, buried by gravel, or bypassed by the subsequent channel. Despite the overall structural failure of the constructed channel, the new channel does not block steelhead migration, and can be serendipitously considered an ecological success. Step-pool design was constrained by a fish-centric requirement that steps be 1 ft tall or less. Some constructed "resting pools" filled rather than transport sediment. Using fish-centric constraints in the design, rather than strictly fluvial geomorphic principles may have contributed to early failure of the step-pool structures and other parts of the system.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AGUFM.H33L..01L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AGUFM.H33L..01L"><span>Feedback Limiting the Coastal Response to Irregularities in Shelf Bathymetry</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>List, J. H.; Benedet, L.</p> <p>2007-12-01</p> <p>Observations and engineering studies have shown that non-uniform inner shelf bathymetry can influence longshore sediment transport gradients and create patterns of shoreline change. One classic example is from Grand Isle, Louisiana, where two offshore borrow pits caused two zones of shoreline accretion landward of the pits. In addition to anthropogenic cases, many natural situations exist in which irregularities in coastal planform are thought to result from offshore shoals or depressions. Recent studies using the hydrodynamic model Delft3D have successfully simulated the observed nearshore erosion and accretion patterns landward of an inner shelf borrow pit. An analysis of the momentum balance in a steady-state simulation has demonstrated that both alongshore pressure gradients (due to alongshore variations in wave setup) and radiation stress gradients (terms relevant to alongshore forcing) are important for forcing the initial pattern of nearshore sedimentation in response to the borrow pit. The response of the coast to non-uniform inner shelf bathymetry appears to be limited, however, because observed shoreline undulations are often rather subtle. (An exception may exist in the case of a very high angle wave climate.) Therefore, feedbacks in processes must exist such that growth of the shoreline salient itself modifies the transport processes in a way that limits further growth (assuming the perturbation in inner shelf bathymetry itself remains unchanged). Examination of the Delft3D momentum balance for an inner shelf pit test case demonstrates that after a certain degree of morphologic development the forcing associated with the well-known shoreline smoothing process (a.k.a., diffusion) counteracts the forcing associated with the inner shelf pit, producing a negative feedback which arrests further growth of the shoreline salient. These results provide insights into the physical processes that control shoreline changes behind inner shelf bathymetric anomalies (i.e. man-made dredge pits and natural bathymetric features) and are therefore relevant to the understanding and prediction of shoreline change on many coasts.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70023248','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70023248"><span>A two-dimensional, time-dependent model of suspended sediment transport and bed reworking for continental shelves</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Harris, C.K.; Wiberg, P.L.</p> <p>2001-01-01</p> <p>A two-dimensional, time-dependent solution to the transport equation is formulated to account for advection and diffusion of sediment suspended in the bottom boundary layer of continental shelves. This model utilizes a semi-implicit, upwind-differencing scheme to solve the advection-diffusion equation across a two-dimensional transect that is configured so that one dimension is the vertical, and the other is a horizontal dimension usually aligned perpendicular to shelf bathymetry. The model calculates suspended sediment concentration and flux; and requires as input wave properties, current velocities, sediment size distributions, and hydrodynamic sediment properties. From the calculated two-dimensional suspended sediment fluxes, we quantify the redistribution of shelf sediment, bed erosion, and deposition for several sediment sizes during resuspension events. The two-dimensional, time-dependent approach directly accounts for cross-shelf gradients in bed shear stress and sediment properties, as well as transport that occurs before steady-state suspended sediment concentrations have been attained. By including the vertical dimension in the calculations, we avoid depth-averaging suspended sediment concentrations and fluxes, and directly account for differences in transport rates and directions for fine and coarse sediment in the bottom boundary layer. A flux condition is used as the bottom boundary condition for the transport equation in order to capture time-dependence of the suspended sediment field. Model calculations demonstrate the significance of both time-dependent and spatial terms on transport and depositional patterns on continental shelves. ?? 2001 Elsevier Science Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24551156','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24551156"><span>Modeling tidal marsh distribution with sea-level rise: evaluating the role of vegetation, sediment, and upland habitat in marsh resiliency.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Schile, Lisa M; Callaway, John C; Morris, James T; Stralberg, Diana; Parker, V Thomas; Kelly, Maggi</p> <p>2014-01-01</p> <p>Tidal marshes maintain elevation relative to sea level through accumulation of mineral and organic matter, yet this dynamic accumulation feedback mechanism has not been modeled widely in the context of accelerated sea-level rise. Uncertainties exist about tidal marsh resiliency to accelerated sea-level rise, reduced sediment supply, reduced plant productivity under increased inundation, and limited upland habitat for marsh migration. We examined marsh resiliency under these uncertainties using the Marsh Equilibrium Model, a mechanistic, elevation-based soil cohort model, using a rich data set of plant productivity and physical properties from sites across the estuarine salinity gradient. Four tidal marshes were chosen along this gradient: two islands and two with adjacent uplands. Varying century sea-level rise (52, 100, 165, 180 cm) and suspended sediment concentrations (100%, 50%, and 25% of current concentrations), we simulated marsh accretion across vegetated elevations for 100 years, applying the results to high spatial resolution digital elevation models to quantify potential changes in marsh distributions. At low rates of sea-level rise and mid-high sediment concentrations, all marshes maintained vegetated elevations indicative of mid/high marsh habitat. With century sea-level rise at 100 and 165 cm, marshes shifted to low marsh elevations; mid/high marsh elevations were found only in former uplands. At the highest century sea-level rise and lowest sediment concentrations, the island marshes became dominated by mudflat elevations. Under the same sediment concentrations, low salinity brackish marshes containing highly productive vegetation had slower elevation loss compared to more saline sites with lower productivity. A similar trend was documented when comparing against a marsh accretion model that did not model vegetation feedbacks. Elevation predictions using the Marsh Equilibrium Model highlight the importance of including vegetation responses to sea-level rise. These results also emphasize the importance of adjacent uplands for long-term marsh survival and incorporating such areas in conservation planning efforts.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008AGUFM.U23D0076N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008AGUFM.U23D0076N"><span>Stability of Gas Hydrates on Continental Margins: Implications of Subsurface Fluid Flow</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Nunn, J. A.</p> <p>2008-12-01</p> <p>Gas hydrates are found at or just below the sediment-ocean interface in continental margins settings throughout the world. They are also found on land in high latitude regions such as the north slope of Alaska. While gas hydrate occurrence is common, gas hydrates are stable under a fairly restricted range of temperatures and pressures. In a purely conductive thermal regime, near surface temperatures depend on basal heat flow, thermal conductivity of sediments, and temperature at the sediment-water or sediment-air interface. Thermal conductivity depends on porosity and sediment composition. Gas hydrates are most stable in areas of low heat flow and high thermal conductivity which produce low temperature gradients. Older margins with thin continental crust and coarse grained sediments would tend to be colder. Another potentially important control on subsurface temperatures is advective heat transport by recharge/discharge of groundwater. Upward fluid flow depresses temperature gradients over a purely conductive regime with the same heat flow which would make gas hydrates more stable. Downward fluid flow would have the opposite effect. However, regional scale fluid flow may substantially increase heat flow in discharge areas which would destabilize gas hydrates. For example, discharge of topographically driven groundwater along the coast in the Central North Slope of Alaska has increased surface heat flow in some areas by more than 50% over a purely conductive thermal regime. Fluid flow also alters the pressure regime which can affect gas hydrate stability. Modeling results suggest a positive feedback between gas hydrate formation/disassociation and fluid flow. Disassociation of gas hydrates or permafrost due to global warming could increase permeability. This could enhance fluid flow and associated heat transport causing a more rapid and/or more spatially extensive gas hydrate disassociation than predicted solely from conductive propagation of temporal changes in surface or water bottom temperature. Model results from both the North Slope of Alaska and the Gulf of Mexico are compared.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li class="active"><span>20</span></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_20 --> <div id="page_21" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li class="active"><span>21</span></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="401"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2002AGUSM.H41B..01K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2002AGUSM.H41B..01K"><span>Recent Measurements of Groundwater Recharge and Discharge Through Everglades' Peat Sediments Using Short-Lived Radium Isotopes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Krest, J. M.; Harvey, J. W.</p> <p>2002-05-01</p> <p>Peat sediments are present as a nearly continuous surface layer across large areas of the Everglades. These sediments have relatively low hydraulic conductivity, impeding water exchange between surface water and the underlying surficial aquifer. Although vertical water transport does occur across the peat layer, rates are slow enough that they are difficult to quantify. Even modest rates of vertical transport, however, become significant to water budgets and nutrient cycles when they occur over a large area. In the Everglades, common methods for measuring exchange across the peat layer are prone to complications: small hydraulic gradients are difficult to measure; seepage meters tend to be imprecise at slow rates; radon profiles or emanation rates are complicated by methane bubble ebullition; chloride profiles often exhibit a strong gradient only at the surface of the peat. We are employing a method that takes advantage of the different production rates of short-lived radium isotopes (Ra-223 and Ra-224) in the peat sediments and in the underlying sand or carbonate aquifer. Pore water radium concentrations are balanced by radioactive decay and production in the surrounding sediments. As the pore water is carried across the sediment interface a temporary excess or deficit of dissolved radium exists until decay is again balanced by the new production rate. We have derived steady-state, one-dimensional models to determine flow rates on the basis of this disequilibrium. This method has the advantage of being most sensitive at the base of the peat, away from transient perturbations occurring at the surface. In addition, Ra-223 and Ra-224 are collected simultaneously, providing two independent measurements. At present we have tested the method in Water Conservation Area-1 and WCA-2A, quantifying recharge and discharge on opposite sides of Levee 39, and also in more central sites in WCA-2A. Additional work is underway in Taylor Slough and Shark Slough.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009AGUFM.U34B..02A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009AGUFM.U34B..02A"><span>Numerical Modeling of Geomorphic Change on Sandy Coasts as a Function of Changing Wave Climate</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Adams, P. N.; McNamara, D.; Murray, A. B.; Lovering, J.</p> <p>2009-12-01</p> <p>Climate change is expected to affect sandy coast geomorphology through two principal mechanisms: (1) sea level rise, which affects cross-shore sediment transport tending to drive shoreline retreat, and (2) alteration of statistical distributions in ocean storm wave climate (deep water wave height, period, and direction), which affects longshore sediment transport gradients that result in shoreline erosion and accretion. To address potential climate change-driven effects on longshore sediment transport gradients, we are developing techniques to link various numerical models of wave transformation with several different longshore sediment transport formulae in accordance with the Community Surface Dynamics Modeling System (CSDMS) project. Results of the various wave transformation models are compared to field observations of cross-shelf wave transformation along the North Florida Atlantic coast for purposes of model verification and calibration. Initial comparisons between wave-transformation methods (assumption of shore-parallel contours, simple wave ray tracing, and the SWAN spectral wave model) on artificially constructed continental shelves reveal an increasing discrepancy of results for increasing complexity of shelf bathymetry. When the more advanced SWAN spectral wave model is coupled with a simple CERC-type formulation of longshore sediment transport and applied to a real coast with complex offshore shoals (Cape Canaveral region of the North Florida Atlantic Coast), the patterns of erosion and accretion agree with results of the simplest wave-propagation models for some wave conditions, but disagree in others. Model simulations in which wave height and period are held constant show that locations of divergence and convergence of sediment flux shift with deep water wave-approach angle in ways that would not always be predicted using less sophisticated wave propagation models. Thus, predicting long-term local shoreline change on actual coastlines featuring complex bathymetry requires the extra computational effort to run the more advanced model over a wide range of wave conditions.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSMG13A..05D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSMG13A..05D"><span>Hydrodynamic Controls on Muddy Sedimentary Fabric Development on Low-Gradient Shelves: Atchafalaya Chenier Plain Subaqueous Delta</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Denommee, K.; Bentley, S. J.; Harazim, D.; Macquaker, J.</p> <p>2016-02-01</p> <p>Short sediment cores and geophysical data collected on the Southwest Louisiana Chenier Plain inner shelf have been studied in order to examine the sedimentary products of current-wave-enhanced sediment gravity flows (CWESGFs), a type of sediment gravity flow where the driving energy required to transport sediment across low-gradient settings is augmented by the near-bed orbital velocity of surface gravity wave and near-bed currents. Sedimentary fabrics observed on the SWLA shelf document the following flow evolution: (1) the erosion of the underlying substrate in response to wave-generated shear stresses in the bottom boundary layer, followed by (2) the deposition of ripple a crossbeded unit during wave-mediated oscillatory motions in low-viscosity suspension; (3) the deposition of subtle intercalated laminae during laminar flow at higher suspended sediment concentrations; followed by the deposition of (4) normally graded sediments during the waning phases of the flow. Significantly, the sedimentary fabrics deposited by CWESGFs on SWLA shelf show diagnostic variations from CWESGF-generated sedimentary fabrics observed on the Eel and Amazon shelves. Differences between the observed sedimentary fabrics are hypothesized to result from variations in the relative contribution of near-bed currents, wave orbital velocities, and bed slope (gravity) to the driving energy of the CWESGF, and as such can be catalogued as diagnostic recognition criteria using a prismatic ternary diagram where current-, wave-, and gravity-dominated end members form the vertices of a triangle, and wave period forms the prism axis. In this framework forcing mechanisms can be represented quantitatively, based on wave period and the relative contribution of each of the CWESGF velocity terms. This framework can be used to explore relationships between hydrodynamics and CWESGF fabrics, providing geologists with a tool with which to better recognize the depositional products of CWESGFs in the rock record; allowing for more accurate paleoenvironmental interpretations of extensive muddy successions.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..1910172B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..1910172B"><span>Sediment aggradation and erosional dynamics of intermontane basins in NW Argentina</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bookhagen, Bodo; Castino, Fabiana; Purinton, Ben; Strecker, Manfred</p> <p>2017-04-01</p> <p>The NW Argentine Andes constitute the Andean Plateau (Altiplano-Puna), the second-largest orogenic plateau on Earth, an internally drained highland with a mean elevation of 4.0 ± 0.5 km (±2 sigma). The Puna is flanked by the externally drained Eastern Cordillera thrust belt and the adjacent broken foreland that are connected to the Atlantic Ocean. These mountain ranges lie in the south-central Andes and are characterized by steep topographic and climatic gradients: The first windward topographic rise east of the Puna forms a significant orographic barrier resulting in high orographic rainfall causing some of the wettest places on Earth. In contrast, the higher-elevation areas of the windward flanks become progressively drier westward, until arid conditions are attained in the central Puna. During the Quaternary the south-central Andes have repeatedly experienced significant paleoclimatic changes associated with deeper penetration of moisture into the orogen, and thus an orogenward shift of the climate gradient. This mechanism has resulted in large variations in erosion dynamics and sediment transfer toward the foreland, resulting in thick valley fills and multiple terrace levels. At much shorter timescales, climate variability during the Holocene has caused similar, yet less pronounced hydrologic trends and associated sedimentation- and erosion processes. Here, we use a time series of Digital Elevation Models (DEMs) to reconstruct land-level changes in the intramontane basins in NW Argentina. We generated the DEMs and height measurements based on stereo airphotos from the 1980s, ASTER satellite imagery, ICESat and dGPS measurements during the past decade, and several TerraSAR-X and TanDEM-X CoSSC pairs starting in 2013. Our data show a strong signal of fluvial sediment aggradation during the past 30 years, in places up to 0.5m per decade, which explains the regionally observed, modern sediment accumulation in basins that has caused major infrastructural problems. We link the increased sediment flux to cascading processes reflecting environmental and climatic changes of the southern-central Andes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=60012&keyword=competence&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=60012&keyword=competence&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>GEOMORPHIC THRESHOLDS AND CHANNEL MORPHOLOGY IN LARGE RIVERS</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Systematic changes in channel morphology occur as channel gradient, streamflow, and sediment character change and interact. Geomorphic thresholds of various kinds are useful metrics to define these changes along the river network, as they are based on in-channel processes that d...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMOS44A..08S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMOS44A..08S"><span>Delineation, Characterization and Assessment of Gas-hydrates: Examples from Indian Offshore</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sain, K.</p> <p>2017-12-01</p> <p>Successful test productions in McKenzie delta, Alaska, Nankai Trough and more recently in South China Sea have provided great hopes for production of gas-hydrates in near future, and boosted national programs of many countries including India. It has been imperative to map the prospective zones of gas-hydrates and evaluate their resource potential. Hence, we have adopted a systematic strategy for the delineation, characterization and quantification of gas-hydrates based on seismic traveltime tomography, full-waveform inversion, impedance inversion, attributes computation and rock-physical modeling. The bathymetry, seafloor temperature, total organic carbon content, sediment-thickness, rate of sedimentation, geothermal gradient imply that shallow sediments of Indian deep water are good hosts for occurrences of gas-hydrates. From the analysis of multi-channel seismic (MCS) data, we have identified the Krishna-Godavari (KG), Mahanadi and Andaman basins as prospective for gas-hydrates, and their presence has been validated by drilling and coring of Indian Expeditions-01 and -02. The MCS data also shows BSR-like features in the Cauvery, Kerala-Konkan and Saurashtra basins indicating that gas-hydrates cannot be ruled out from these basins also. We shall present several approaches that have been applied to field seismic and well-log data for the detection, characterization and quantification of gas-hydrates along the Indian margin.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2275895','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2275895"><span>Influence of macrofaunal assemblages and environmental heterogeneity on microphytobenthic production in experimental systems</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Dyson, Kirstie E; Bulling, Mark T; Solan, Martin; Hernandez-Milian, Gema; Raffaelli, David G; White, Piran C.L; Paterson, David M</p> <p>2007-01-01</p> <p>Despite the complexity of natural systems, heterogeneity caused by the fragmentation of habitats has seldom been considered when investigating ecosystem processes. Empirical approaches that have included the influence of heterogeneity tend to be biased towards terrestrial habitats; yet marine systems offer opportunities by virtue of their relative ease of manipulation, rapid response times and the well-understood effects of macrofauna on sediment processes. Here, the influence of heterogeneity on microphytobenthic production in synthetic estuarine assemblages is examined. Heterogeneity was created by enriching patches of sediment with detrital algae (Enteromorpha intestinalis) to provide a source of allochthonous organic matter. A gradient of species density for four numerically dominant intertidal macrofauna (Hediste diversicolor, Hydrobia ulvae, Corophium volutator, Macoma balthica) was constructed, and microphytobenthic biomass at the sediment surface was measured. Statistical analysis using generalized least squares regression indicated that heterogeneity within our system was a significant driving factor that interacted with macrofaunal density and species identity. Microphytobenthic biomass was highest in enriched patches, suggesting that nutrients were obtained locally from the sediment–water interface and not from the water column. Our findings demonstrate that organic enrichment can cause the development of heterogeneity which influences infaunal bioturbation and consequent nutrient generation, a driver of microphytobenthic production. PMID:17698480</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016E%26ES...32a2064H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016E%26ES...32a2064H"><span>Time Series Analysis of Heavy Metal Concentrations along the Watershed Gradient in Cameron Highlands: Geospatial Approaches</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Haron, S. H.; Ismail, B. S.; Mispan, M. R.; Abd Rahman, N. F.; Khalid, K.; Rasid, M. Z. Abdul; Sidek, L. M.</p> <p>2016-03-01</p> <p>Heavy metal, particularly cadmium, lead, and arsenic, constitute a significant potential threat to human health. Some metals are extremely toxic to humans and the toxic heavy metals of greatest concern include cadmium, lead, and arsenic. The objective of the study conducted was to determine the accumulation and distribution status of heavy metal cadmium (Cd) in the sediment of Bertam River from September 2014 to February 2015 in the agricultural areas of Cameron Highlands, Malaysia. The sediment samples were collected randomly in three replicates from ten sampling points in the agricultural areas of Cameron Highlands. The heavy metals in the sediment were extracted using the wet acid method and the sample concentrations are then tested for metal concentrations by the spectrography method using Inductively Coupled Plasma (ICP) spectrography. Inverse distance weighting (IDW) was used to create a map of metal concentrations for a point on the polygon dataset spatial interpolation. There is an increasing trend of Cd from the upstream to downstream stations along Bertam River during the rainy season. The activity range of Cd is 0.07 to 2.83 µg/g during the rainy season, whereas, during the dry season, Cd activity ranged from 0.26-0.83µg/g.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16721623','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16721623"><span>The gut microenvironment of sediment-dwelling Chironomus plumosus larvae as characterised with O2, pH, and redox microsensors.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Stief, Peter; Eller, Gundula</p> <p>2006-09-01</p> <p>We devised a set-up in which microsensors can be used for characterising the gut microenvironment of aquatic macrofauna. In a small flow cell, we measured microscale gradients through dissected guts (O(2), pH, redox potential [E ( h )]), in the haemolymph (O(2)), and towards the body surface (O(2)) of Chironomus plumosus larvae. The gut microenvironment was compared with the chemical conditions in the lake sediment in which the animals reside and feed. When the dissected guts were incubated at the same nominal O(2) concentration as in haemolymph, the gut content was completely anoxic and had pH and E ( h ) values slightly lower than in the ambient sediment. When the dissected guts were artificially oxygenated, the volumetric O(2)-consumption rates of the gut content were at least 10x higher than in the sediment. Using these potential O(2)-consumption rates in a cylindrical diffusion-reaction model, it was predicted that diffusion of O(2) from the haemolymph to the gut could not oxygenate the gut content under in vivo conditions. Additionally, the potential O(2)-consumption rates were so high that the intake of dissolved O(2) along with feeding could be ruled out to oxygenate the gut content. We conclude that microorganisms present in the gut of C. plumosus cannot exhibit an aerobic metabolism. The presented microsensor technique and the data analysis are applicable to guts of other macrofauna species with cutaneous respiration.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24735912','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24735912"><span>Source tracking of leaky sewers: a novel approach combining fecal indicators in water and sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Guérineau, Hélène; Dorner, Sarah; Carrière, Annie; McQuaid, Natasha; Sauvé, Sébastien; Aboulfadl, Khadija; Hajj-Mohamad, Mariam; Prévost, Michèle</p> <p>2014-07-01</p> <p>In highly urbanized areas, surface water and groundwater are particularly vulnerable to sewer exfiltration. In this study, as an alternative to Microbial Source Tracking (MST) methods, we propose a new method combining microbial and chemical fecal indicators (Escherichia coli (E. coli)) and wastewater micropollutants (WWMPs) analysis both in water and sediment samples and under different meteorological conditions. To illustrate the use of this method, wastewater exfiltration and subsequent infiltration were identified and quantified by a three-year field study in an urban canal. The gradients of concentrations observed suggest that several sources of fecal contamination of varying intensity may be present along the canal, including feces from resident animal populations, contaminated surface run-off along the banks and under bridge crossings, release from contaminated banks, entrainment of contaminated sediments, and most importantly sewage exfiltration. Calculated exfiltration-infiltration volumes varied between 0.6 and 15.7 m(3)/d per kilometer during dry weather, and between 1.1 and 19.5 m(3)/d per kilometer during wet weather. WWMPs were mainly diluted and degraded below detection limits in water. E. coli remains the best exfiltration indicator given a large volume of dilution and a high abundance in the wastewater source. WWMPs are effective for detecting cumulated contamination in sediments from a small volume source and are particularly important because E. coli on its own does not allow source tracking. Copyright © 2014 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70148052','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70148052"><span>Characterizing toxicity of metal-contaminated sediments from mining areas</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Besser, John M.; Brumbaugh, William G.; Ingersoll, Christopher G.</p> <p>2015-01-01</p> <p>This paper reviews methods for testing the toxicity of metals associated with freshwater sediments, linking toxic effects with metal exposure and bioavailability, and developing sediment quality guidelines. The most broadly applicable approach for characterizing metal toxicity is whole-sediment toxicity testing, which attempts to simulate natural exposure conditions in the laboratory. Standard methods for whole-sediment testing can be adapted to test a wide variety of taxa. Chronic sediment tests that characterize effects on multiple endpoints (e.g., survival, growth, and reproduction) can be highly sensitive indicators of adverse effects on resident invertebrate taxa. Methods for testing of aqueous phases (pore water, overlying water, or elutriates) are used less frequently. Analysis of sediment toxicity data focuses on statistical comparisons between responses in sediments from the study area and responses in one or more uncontaminated reference sediments. For large or complex study areas, a greater number of reference sediments is recommended to reliably define the normal range of responses in uncontaminated sediments – the ‘reference envelope’. Data on metal concentrations and effects on test organisms across a gradient of contamination may allow development of concentration-response models, which estimate metal concentrations associated with specified levels of toxic effects (e.g. 20% effect concentration or EC20). Comparisons of toxic effects in laboratory tests with measures of impacts on resident benthic invertebrate communities can help document causal relationships between metal contamination and biological effects. Total or total-recoverable metal concentrations in sediments are the most common measure of metal contamination in sediments, but metal concentrations in labile sediment fractions (e.g., determined as part of selective sediment extraction protocols) may better represent metal bioavailability. Metals released by the weak-acid extraction of acid-volatile sulfide (AVS), termed simultaneously-extracted metals (SEM), are widely used to estimate the ‘potentially-bioavailable’ fraction of metals that is not bound to sulfides (i.e., SEM-AVS). Metal concentrations in pore water are widely considered to be direct measures of metal bioavailability, and predictions of toxicity based on pore-water metal concentrations may be further improved by modeling interactions of metals with other pore-water constituents using Biotic Ligand Models. Data from sediment toxicity tests and metal analyses has provided the basis for development of sediment quality guidelines, which estimate thresholds for toxicity of metals in sediments. Empirical guidelines such as Probable Effects Concentrations or (PECs) are based on associations between sediment metal concentrations and occurrence of toxic effects in large datasets. PECs do not model bioavailable metals, but they can be used to estimate the toxicity of metal mixtures using by calculation of probable effect quotients (PEQ = sediment metal concentration/PEC). In contrast, mechanistic guidelines, such as Equilibrium Partitioning Sediment Benchmarks (ESBs) attempt to predict both bioavailability and mixture toxicity. Application of these simple bioavailability models requires more extensive chemical characterization of sediments or pore water, compared to empirical guidelines, but may provide more reliable estimates of metal toxicity across a wide range of sediment types.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70035738','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70035738"><span>Accumulation of iron and arsenic in the Chandina alluvium of the lower delta plain, Southeastern Bangladesh</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Zahid, A.; Hassan, M.Q.; Breit, G.N.; Balke, K.-D.; Flegr, M.</p> <p>2009-01-01</p> <p>Accumulations of iron, manganese, and arsenic occur in the Chandina alluvium of southeastern Bangladesh within 2.5 m of the ground surface. These distinctive orange-brown horizons are subhorizontal and consistently occur within 1 m of the contact of the aerated (yellow-brown) and water-saturated (gray) sediment. Ferric oxyhydroxide precipitates that define the horizons form by oxidation of reduced iron in pore waters near the top of the saturated zone when exposed to air in the unsaturated sediment. Hydrous Fe-oxide has a high specific surface area and thus a high adsorption capacity that absorbs the bulk of arsenic also present in the reduced pore water, resulting in accumulations containing as much as 280 ppm arsenic. The steep redox gradient that characterizes the transition of saturated and unsaturated sediment also favors accumulation of manganese oxides in the oxidized sediment. Anomalous concentrations of phosphate and molybdenum also detected in the ferric oxyhydroxide-enriched sediment are attributed to sorption processes. ?? Springer Science+Business Media B.V. 2008.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28116682','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28116682"><span>Deltas, freshwater discharge, and waves along the Young Sound, NE Greenland.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kroon, Aart; Abermann, Jakob; Bendixen, Mette; Lund, Magnus; Sigsgaard, Charlotte; Skov, Kirstine; Hansen, Birger Ulf</p> <p>2017-02-01</p> <p>A wide range of delta morphologies occurs along the fringes of the Young Sound in Northeast Greenland due to spatial heterogeneity of delta regimes. In general, the delta regime is related to catchment and basin characteristics (geology, topography, drainage pattern, sediment availability, and bathymetry), fluvial discharges and associated sediment load, and processes by waves and currents. Main factors steering the Arctic fluvial discharges into the Young Sound are the snow and ice melt and precipitation in the catchment, and extreme events like glacier lake outburst floods (GLOFs). Waves are subordinate and only rework fringes of the delta plain forming sandy bars if the exposure and fetch are optimal. Spatial gradients and variability in driving forces (snow and precipitation) and catchment characteristics (amount of glacier coverage, sediment characteristics) as well as the strong and local influence of GLOFs in a specific catchment impede a simple upscaling of sediment fluxes from individual catchments toward a total sediment flux into the Young Sound.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23628888','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23628888"><span>Validating the use of embryonic fish otoliths as recorders of sublethal exposure to copper in estuarine sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Barbee, Nicole C; Greig, Alan; Swearer, Stephen E</p> <p>2013-07-01</p> <p>In this study we explore the use of fish otoliths ('earbones') as a tool for detecting exposure to heavy metals in sediments. Because otoliths are metabolically inert and incorporate chemical impurities during growth, they can potentially provide a more permanent record of pollutant exposure history in aquatic environments than soft tissues. To validate this technique we cultured embryos of a native Australian fish, the common Galaxias (Galaxias maculatus), in the laboratory on sediments spiked with copper in a concentration gradient. Our aims were to test whether exposure to copper contaminated sediments is recorded in the otoliths of embryos and determine over what range in concentrations we can detect differences in exposure. We found elevated copper levels in otoliths of embryos exposed to high copper concentrations in sediments, suggesting that otoliths can be used as a tool to track a history of exposure to elevated copper levels in the environment. Copyright © 2013 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1008201','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1008201"><span>Development of channel organization and roughness following sediment pulses in single‐thread, gravel bed rivers</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Madej, Mary Ann</p> <p>2001-01-01</p> <p>Large, episodic inputs of coarse sediment (sediment pulses) in forested, mountain streams may result in changes in the size and arrangement of bed forms and in channel roughness. A conceptual model of channel organization delineates trajectories of response to sediment pulses for many types of gravel bed channels. Channels exhibited self‐organizing behavior to various degrees based on channel gradient, presence of large in‐channel wood or other forcing elements, the size of the sediment pulse, and the number of bed‐mobilizing flows since disturbance. Typical channel changes following a sediment pulse were initial decreases in water depth, in variability of bed elevations, and in the regularity of bed form spacing. Trajectories of change subsequently showed increased average water depth, more variable and complex bed topography, and increased uniformity of bed form spacing. Bed form spacing in streams with abundant forcing elements developed at a shorter spatial scale (two to five channel widths) than in streams without such forcing mechanisms (five to 10 channel widths). Channel roughness increased as bed forms developed.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21596394','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21596394"><span>Early warning indicators for river nutrient and sediment loads in tropical seagrass beds: a benchmark from a near-pristine archipelago in Indonesia.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>van Katwijk, M M; van der Welle, M E W; Lucassen, E C H E T; Vonk, J A; Christianen, M J A; Kiswara, W; al Hakim, I Inayat; Arifin, A; Bouma, T J; Roelofs, J G M; Lamers, L P M</p> <p>2011-07-01</p> <p>In remote, tropical areas human influences increase, potentially threatening pristine seagrass systems. We aim (i) to provide a bench-mark for a near-pristine seagrass system in an archipelago in East Kalimantan, by quantifying a large spectrum of abiotic and biotic properties in seagrass meadows and (ii) to identify early warning indicators for river sediment and nutrient loading, by comparing the seagrass meadow properties over a gradient with varying river influence. Abiotic properties of water column, pore water and sediment were less suitable indicators for increased sediment and nutrient loading than seagrass properties. Seagrass meadows strongly responded to higher sediment and nutrient loads and proximity to the coast by decreasing seagrass cover, standing stock, number of seagrass species, changing species composition and shifts in tissue contents. Our study confirms that nutrient loads are more important than water nutrient concentrations. We identify seagrass system variables that are suitable indicators for sediment and nutrient loading, also in rapid survey scenarios with once-only measurements. Copyright © 2011 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2855332','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2855332"><span>The Physical Relationship between Infectivity and Prion Protein Aggregates Is Strain-Dependent</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Tixador, Philippe; Herzog, Laëtitia; Reine, Fabienne; Jaumain, Emilie; Chapuis, Jérôme; Le Dur, Annick; Laude, Hubert; Béringue, Vincent</p> <p>2010-01-01</p> <p>Prions are unconventional infectious agents thought to be primarily composed of PrPSc, a multimeric misfolded conformer of the ubiquitously expressed host-encoded prion protein (PrPC). They cause fatal neurodegenerative diseases in both animals and humans. The disease phenotype is not uniform within species, and stable, self-propagating variations in PrPSc conformation could encode this ‘strain’ diversity. However, much remains to be learned about the physical relationship between the infectious agent and PrPSc aggregation state, and how this varies according to the strain. We applied a sedimentation velocity technique to a panel of natural, biologically cloned strains obtained by propagation of classical and atypical sheep scrapie and BSE infectious sources in transgenic mice expressing ovine PrP. Detergent-solubilized, infected brain homogenates were used as starting material. Solubilization conditions were optimized to separate PrPSc aggregates from PrPC. The distribution of PrPSc and infectivity in the gradient was determined by immunoblotting and mouse bioassay, respectively. As a general feature, a major proteinase K-resistant PrPSc peak was observed in the middle part of the gradient. This population approximately corresponds to multimers of 12–30 PrP molecules, if constituted of PrP only. For two strains, infectivity peaked in a markedly different region of the gradient. This most infectious component sedimented very slowly, suggesting small size oligomers and/or low density PrPSc aggregates. Extending this study to hamster prions passaged in hamster PrP transgenic mice revealed that the highly infectious, slowly sedimenting particles could be a feature of strains able to induce a rapidly lethal disease. Our findings suggest that prion infectious particles are subjected to marked strain-dependent variations, which in turn could influence the strain biological phenotype, in particular the replication dynamics. PMID:20419156</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009Geomo.103..430S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009Geomo.103..430S"><span>Bedload entrainment in low-gradient paraglacial coastal rivers of Maine, U.S.A.: Implications for habitat restoration</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Snyder, Noah P.; Castele, Michael R.; Wright, Jed R.</p> <p>2009-02-01</p> <p>The rivers of coastal Maine flow through mainstem lakes and long low-gradient reaches that break the continuum of bedload transport expected in nonparaglacial landscapes. Stream erosion of glacial deposits supplies coarse sediment to these systems. The land use history includes intensive timber harvest and associated dam construction, which may have altered the frequency of substrate-mobilizing events. These watersheds are vital habitat for the last remaining wild anadromous Atlantic salmon in the United States. Future adjustments in channel morphology and habitat quality (via natural stream processes or restoration projects) depend on erosion, transport, and deposition of coarse sediment. These factors motivate our study of competence at four sites in the Sheepscot and Narraguagus watersheds. Three of the four sites behaved roughly similarly, with particle entrainment during intervals that include winter ice and spring flood conditions, and relatively minor bed mobilization during moderate floods in the summer and fall (with a recurrence interval of 2-3 years). The fourth site, on the Sheepscot River mainstem, exhibits more vigorous entrainment of marked particles and more complex three-dimensional channel morphology. This contrast is partially due to local geomorphic conditions that favor high shear stresses (particularly relatively steep gradient), but also likely to nourishment of the bedload saltation system by recruitment from an eroding glacial deposit upstream. Our results suggest that the frequency and magnitude of bedload transport are reach specific, depending on factors including local channel geometry, upstream sediment supply and transport, and formation of anchor ice. This presents a challenge for stream practitioners in this region: different reaches may require contrasting management strategies. Our results underscore the importance of understanding channel processes at a given site and assessing conditions upstream and downstream as a prerequisite for conducting habitat restoration projects.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014EGUGA..16.2785K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014EGUGA..16.2785K"><span>The influence of terracettes on surface hydrology and erosion on vegetated Alpine, mountain and steep-sloping environments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kuhn, Nikolaus; (Phil) Greenwood, Philip</p> <p>2014-05-01</p> <p>Alpine and mountain slopes represent important pathways that link high altitude grazing areas to meadows and rangelands at lower elevations. Given the often acute gradient of mountain slopes, they represent a convenient and potentially highly efficient runoff conveyance route that facilitates the downslope transfer of fine-sediment and sediment-bound nutrients and contaminants during erosion events. Above a certain gradient, many slopes host small steps, or `terracettes`. As these are generally orientated across slope, their genesis is usually attributed to a combination of soil creep, coupled with (and often accentuated by) grazing animals. Motivated by the prevalence of these distinct landform features and lack of information on their role as runoff conveyance routes, this communication reports preliminary results from an investigation to explore the possibility that terracettes may act as preferential flow-paths, with an as yet undocumented ability to greatly influence surface hydrology in mountainous and steeply-sloping environments. A ca. 40 m2 area of vegetated terracettes and section of adjacent thalweg, with gradients ranging from approximately 25-35o, were scanned using an automated Topcon IS03 Total Station at a resolution of 0.1 * 0.1 m. Data were converted to a Digital Elevation Model (DEM) in ArcGIS 10 Geographical Information System (GIS), and queried using Spatial Analyst (Surface Hydrology; Flow Accumulation function) to identify slope-sections that could act as preferential flow-pathways during runoff events. These data were supplemented by information on soil physical properties that included grain size composition, bulk density and porosity, in order to establish spatial variations in soil characteristics associated with the vertical and horizontal terracette features. Combining the digital and in-situ data indicate that the technique is able to identify preferential surface flow-paths. Such information could greatly benefit the future management of grazing and rangelands in Alpine, mountain and steeply sloping environments. With higher resolution data covering larger areas, as well as the possibility of using fallout radionuclide data to establish sediment residence times on depositional areas, it is envisioned that runoff and transportation of fine-sediment and sediment-associated nutrients and contaminants down these flow pathways could be modeled, predicted and their effects mitigated and perhaps eventually reduced.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AGUFM.H44B..03W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AGUFM.H44B..03W"><span>The dynamics of bedrock channel adjustment: Modeling the influence of sediment supply, weathering, and lithology on channel cross-sectional and longitudinal shape</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wobus, C.; Tucker, G.; Anderson, R.; Kean, J.; Small, E.; Hancock, G.</p> <p>2007-12-01</p> <p>The cross-sectional form of a natural river channel controls the capacity of the system to carry water off a landscape, to convey sediment derived from hillslopes, and to erode its bed and banks. Numerical models that describe the response of a landscape to changes in climate or tectonics therefore require formulations that can accommodate changes in channel cross-sectional geometry through time. We have developed a 2D numerical model that computes the formation of a channel in a cohesive, detachment-limited substrate subject to steady, unidirectional flow. Boundary shear stress is calculated using a simple approximation of the flow field in which log-velocity profiles are assumed to apply along vectors that are perpendicular to the local boundary surface. The resulting model predictions for the velocity structure, peak boundary shear stress, and equilibrium channel shape compare well with the predictions of a more sophisticated but more computationally demanding ray-isovel model. For example, the mean velocities computed by the two models are consistent to within ~3%, and the predicted peak shear stress is consistent to within ~7%. The efficiency of our model makes it suitable for calculations of long-term morphologic change both in single cross-sections and in series of cross-sections arrayed downstream. For a uniform substrate, the model predicts a strong tendency toward a fixed width-to-depth ratio, regardless of gradient or discharge. The model predicts power-law relationships between width and discharge with an exponent near 2/5, and between width and gradient with an exponent near -1/5. Recent enhancements to the model include the addition of sediment, which increases the width-to-depth ratio at steady state by favoring erosion of the channel walls relative to the channel bed (the "cover effect"). Inclusion of a probability density function of discharges with a simple parameterization of weathering along channel banks leads to the formation of model strath terraces. Downstream changes in substrate erodibility or tectonic uplift rate lead to step-function changes in channel width, consistent with empirical observations. Finally, explicit inclusion of bedload transport allows channel width, gradient, and the pattern of sediment flux to evolve dynamically, allowing us to explore the response of bedrock channels to both spatial patterns of rock uplift, and temporal variations in sediment input.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li class="active"><span>21</span></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_21 --> <div id="page_22" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li class="active"><span>22</span></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="421"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24910015','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24910015"><span>Diversity and distribution of freshwater testate amoebae (protozoa) along latitudinal and trophic gradients in China.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ju, Lihua; Yang, Jun; Liu, Lemian; Wilkinson, David M</p> <p>2014-11-01</p> <p>Freshwater microbial diversity is subject to multiple stressors in the Anthropocene epoch. However, the effects of climate changes and human activities on freshwater protozoa remain poorly understood. In this study, the diversity and distribution of testate amoebae from the surface sediments were investigated in 51 Chinese lakes and reservoirs along two gradients, latitude and trophic status. A total of 169 taxa belonging to 24 genera were identified, and the most diverse and dominant genera were Difflugia (78 taxa), Centropyxis (26 taxa) and Arcella (12 taxa). Our analysis revealed that biomass of testate amoebae decreased significantly along the latitudinal gradient, while Shannon-Wiener indices and species richness presented an opposite trend (P < 0.05). The relationship of diversity and latitude is, we suspect, an artifact of the altitudinal distribution of our sites. Furthermore, biomass-based Shannon-Wiener index and species richness of testate amoebae were significantly unimodally related to trophic status (P < 0.05). This is the first large-scale study showing the effects of latitude and trophic status on diversity and distribution of testate amoebae in China. Therefore, our results provide valuable baseline data on testate amoebae and contribute to lake management and our understanding of the large-scale global patterns in microorganism diversity.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFM.H13C1379M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFM.H13C1379M"><span>Advancement in Watershed Modelling Using Dynamic Lateral and Longitudinal Sediment (Dis)connectivity Prediction</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mahoney, D. T.; al Aamery, N. M. H.; Fox, J.</p> <p>2017-12-01</p> <p>The authors find that sediment (dis)connectivity has seldom taken precedence within watershed models, and the present study advances this modeling framework and applies the modeling within a bedrock-controlled system. Sediment (dis)connectivity, defined as the detachment and transport of sediment from source to sink between geomorphic zones, is a major control on sediment transport. Given the availability of high resolution geospatial data, coupling sediment connectivity concepts within sediment prediction models offers an approach to simulate sediment sources and pathways within a watershed's sediment cascade. Bedrock controlled catchments are potentially unique due to the presence of rock outcrops causing longitudinal impedance to sediment transport pathways in turn impacting the longitudinal distribution of the energy gradient responsible for conveying sediment. Therefore, the authors were motivated by the need to formulate a sediment transport model that couples sediment (dis)connectivity knowledge to predict sediment flux for bedrock controlled catchments. A watershed-scale sediment transport model was formulated that incorporates sediment (dis)connectivity knowledge collected via field reconnaissance and predicts sediment flux through coupling with the Partheniades equation and sediment continuity model. Sediment (dis)connectivity was formulated by coupling probabilistic upland lateral connectivity prediction with instream longitudinal connectivity assessments via discretization of fluid and sediment pathways. Flux predictions from the upland lateral connectivity model served as an input to the instream longitudinal connectivity model. Disconnectivity in the instream model was simulated via the discretization of stream reaches due to barriers such as bedrock outcroppings and man-made check dams. The model was tested for a bedrock controlled catchment in Kentucky, USA for which extensive historic water and sediment flux data was available. Predicted sediment flux was validated via sediment flux measurements collected by the authors. Watershed configuration and the distribution of lateral and longitudinal impedances to sediment transport were found to have significant influence on sediment connectivity and thus sediment flux.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70108399','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70108399"><span>Insights into biodegradation through depth-resolved microbial community functional and structural profiling of a crude-oil contaminant plume</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Fahrenfeld, Nicole; Cozzarelli, Isabelle M.; Bailey, Zach; Pruden, Amy</p> <p>2014-01-01</p> <p>Small-scale geochemical gradients are a key feature of aquifer contaminant plumes, highlighting the need for functional and structural profiling of corresponding microbial communities on a similar scale. The purpose of this study was to characterize the microbial functional and structural diversity with depth across representative redox zones of a hydrocarbon plume and an adjacent wetland, at the Bemidji Oil Spill site. A combination of quantitative PCR, denaturing gradient gel electrophoresis, and pyrosequencing were applied to vertically sampled sediment cores. Levels of the methanogenic marker gene, methyl coenzyme-M reductase A (mcrA), increased with depth near the oil body center, but were variable with depth further downgradient. Benzoate degradation N (bzdN) hydrocarbon-degradation gene, common to facultatively anaerobic Azoarcus spp., was found at all locations, but was highest near the oil body center. Microbial community structural differences were observed across sediment cores, and bacterial classes containing known hydrocarbon degraders were found to be low in relative abundance. Depth-resolved functional and structural profiling revealed the strongest gradients in the iron-reducing zone, displaying the greatest variability with depth. This study provides important insight into biogeochemical characteristics in different regions of contaminant plumes, which will aid in improving models of contaminant fate and natural attenuation rates.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29908743','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29908743"><span>Mercury bioaccumulation in aquatic biota along a salinity gradient in the Saint John River estuary.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Reinhart, Bethany L; Kidd, Karen A; Curry, R Allen; O'Driscoll, Nelson J; Pavey, Scott A</p> <p>2018-06-01</p> <p>Although estuaries are critical habitats for many aquatic species, the spatial trends of toxic methylmercury (MeHg) in biota from fresh to marine waters are poorly understood. Our objective was to determine if MeHg concentrations in biota changed along a salinity gradient in an estuary. Fourspine Stickleback (Apeltes quadracus), invertebrates (snails, amphipods, and chironomids), sediments, and water were collected from ten sites along the Saint John River estuary, New Brunswick, Canada in 2015 and 2016, with salinities ranging from 0.06 to 6.96. Total mercury (proxy for MeHg) was measured in whole fish and MeHg was measured in a subset of fish, pooled invertebrates, sediments, and water. Stable sulfur (δ 34 S), carbon (δ 13 C), and nitrogen (δ 15 N) isotope values were measured to assess energy sources (S, C) and relative trophic level (N). There were increases in biotic δ 13 C and δ 34 S from fresh to more saline sites and these measures were correlated with salinity. Though aqueous MeHg was higher at the freshwater than more saline sites, only chironomid MeHg increased significantly with salinity. In the Saint John River estuary, there was little evidence that MeHg and its associated risks increased along a salinity gradient. Copyright © 2018. Published by Elsevier B.V.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/pages/biblio/1254436-environmental-impact-ongoing-sources-metal-contamination-remediated-sediments','SCIGOV-DOEP'); return false;" href="https://www.osti.gov/pages/biblio/1254436-environmental-impact-ongoing-sources-metal-contamination-remediated-sediments"><span>Environmental impact of ongoing sources of metal contamination on remediated sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/pages">DOE PAGES</a></p> <p>Knox, Anna Sophia; Paller, Michael H.; Milliken, Charles E.; ...</p> <p>2016-04-29</p> <p>One challenge to all remedial approaches for contaminated sediments is the continued influx of contaminants from uncontrolled sources following remediation. We investigated the effects of ongoing contamination in mesocosms employing sediments remediated by different types of active and passive caps and in-situ treatment. Our hypothesis was that the sequestering agents used in active caps and in situ treatment will bind elements (arsenic, chromium, cadmium, cobalt, copper, nickel, lead, selenium, and zinc) from ongoing sources thereby reducing their bioavailability and protecting underlying remediated sediments from recontamination. Most element concentrations in surface water remained significantly lower in mesocosms with apatite and mixedmore » amendment caps than in mesocosms with passive caps (sand), uncapped sediment, and spike solution throughout the 2520 hour experiment. Element concentrations were significantly higher in Lumbriculus variegatus from untreated sediment than in Lumbriculus from most active caps. Moreover, Pearson correlations between element concentrations in Lumbriculus and metal concentrations in the top 2.5 cm of sediment or cap measured by diffusive gradient in thin films (DGT) sediment probes were generally strong (as high as 0.98) and significant (p<0.05) for almost all tested elements. Metal concentrations in both Lumbriculus and sediment/cap were lowest in apatite, mixed amendment, and activated carbon treatments. Finally, these findings show that some active caps can protect remediated sediments by reducing the bioavailable pool of metals/metalloids in ongoing sources of contamination.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70031941','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70031941"><span>Dissolved oxygen transfer to sediments by sweep and eject motions in aquatic environments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>O'Connor, B.L.; Hondzo, Miki</p> <p>2008-01-01</p> <p>Dissolved oxygen (DO) concentrations were quantified near the sediment-water interface to evaluate DO transfer to sediments in a laboratory recirculating flume and open channel under varying fluid-flow conditions. DO concentration fluctuations were observed within the diffusive sublayer, as defined by the time-averaged DO concentration gradient near the sediment-water interface. Evaluation of the DO concentration fluctuations along with detailed fluid-flow characterizations were used to quantify quasi-periodic sweep and eject motions (bursting events) near the sediments. Bursting events dominated the Reynolds shear stresses responsible for momentum and mass fluctuations near the sediment bed. Two independent methods for detecting bursting events using DO concentration and velocity data produced consistent results. The average time between bursting events was scaled with wall variables and was incorporated into a similarity model to describe the dimensionless mass transfer coefficient (Sherwood number, Sh) in terms of the Reynolds number, Re, and Schmidt number, Sc, which described transport in the flow. The scaling of bursting events was employed with the similarity model to quantify DO transfer to sediments and results showed a high degree of agreement with experimental data. ?? 2008, by the American Society of Limnology and Oceanography, Inc.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23590290','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23590290"><span>Bioturbation and dissolved organic matter enhance contaminant fluxes from sediment treated with powdered and granular activated carbon.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kupryianchyk, D; Noori, A; Rakowska, M I; Grotenhuis, J T C; Koelmans, A A</p> <p>2013-05-21</p> <p>Sediment amendment with activated carbon (AC) is a promising technique for in situ sediment remediation. To date it is not clear whether this technique sufficiently reduces sediment-to-water fluxes of sediment-bound hydrophobic organic chemicals (HOCs) in the presence of bioturbators. Here, we report polychlorobiphenyl (PCB) pore water concentrations, fluxes, mass transfer coefficients, and survival data of two benthic species, for four treatments: no AC addition (control), powdered AC addition, granular AC addition and addition and subsequent removal of GAC (sediment stripping). AC addition decreased mass fluxes but increased apparent mass transfer coefficients because of dissolved organic carbon (DOC) facilitated transport across the benthic boundary layer (BBL). In turn, DOC concentrations depended on bioturbator activity which was high for the PAC tolerant species Asellus aquaticus and low for AC sensitive species Lumbriculus variegatus. A dual BBL resistance model combining AC effects on gradients, DOC facilitated transport and biodiffusion was evaluated against the data and showed how the type of resistance differs with treatment and chemical hydrophobicity. Data and simulations illustrate the complex interplay between AC and contaminant toxicity to benthic organisms and how differences in species tolerance affect mass fluxes from sediment to the water column.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFMEP41B3522M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFMEP41B3522M"><span>Using LiDAR to Estimate Surface Erosion Volumes within the Post-storm 2012 Bagley Fire</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mikulovsky, R. P.; De La Fuente, J. A.; Mondry, Z. J.</p> <p>2014-12-01</p> <p>The total post-storm 2012 Bagley fire sediment budget of the Squaw Creek watershed in the Shasta-Trinity National Forest was estimated using many methods. A portion of the budget was quantitatively estimated using LiDAR. Simple workflows were designed to estimate the eroded volume's of debris slides, fill failures, gullies, altered channels and streams. LiDAR was also used to estimate depositional volumes. Thorough manual mapping of large erosional features using the ArcGIS 10.1 Geographic Information System was required as these mapped features determined the eroded volume boundaries in 3D space. The 3D pre-erosional surface for each mapped feature was interpolated based on the boundary elevations. A surface difference calculation was run using the estimated pre-erosional surfaces and LiDAR surfaces to determine volume of sediment potentially delivered into the stream system. In addition, cross sections of altered channels and streams were taken using stratified random selection based on channel gradient and stream order respectively. The original pre-storm surfaces of channel features were estimated using the cross sections and erosion depth criteria. Open source software Inkscape was used to estimate cross sectional areas for randomly selected channel features and then averaged for each channel gradient and stream order classes. The average areas were then multiplied by the length of each class to estimate total eroded altered channel and stream volume. Finally, reservoir and in-channel depositional volumes were estimated by mapping channel forms and generating specific reservoir elevation zones associated with depositional events. The in-channel areas and zones within the reservoir were multiplied by estimated and field observed sediment thicknesses to attain a best guess sediment volume. In channel estimates included re-occupying stream channel cross sections established before the fire. Once volumes were calculated, other erosion processes of the Bagley sedimentation study, such as surface soil erosion were combined to estimate the total fire and storm sediment budget for the Squaw Creek watershed. The LiDAR-based measurement workflows can be easily applied to other sediment budget studies using one high resolution LiDAR dataset.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004HyPr...18..703S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004HyPr...18..703S"><span>Sediment pathways in a tropical forest: effects of logging roads and skid trails</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sidle, Roy C.; Sasaki, Shozo; Otsuki, Mieko; Noguchi, Shoji; Rahim Nik, Abdul</p> <p>2004-03-01</p> <p>Significant erosion occurred from recently constructed forest logging roads and skid trails in a small headwater catchment in Peninsular Malaysia. Soil loss was estimated by measuring dimensions of all significant rills and gullies along the road, as well as by measuring height of preserved soil pedestals in sidecast and fill material and on skid trails. Estimates of surface erosion from logging roads and skid trails were 272 +/- 20 t ha-1 year-1 and 275 +/- 20 t ha-1 year-1 respectively. However, owing to lack of connectivity of skid trails to the stream, much of the sediment mobilized on skid trails was stored either on adjacent hillslopes or the trails themselves, rather than being transported to the stream system, as was the case for the road. Steeper skid trails (>20% gradient) had slightly higher erosion rates (320 +/- 24 t ha-1 year-1) than trails with gentler gradients (245-264 t ha-1 year-1). Some 60% of the soil loss on logging roads comes from erosion of the running surface. Disturbed cut and fill material along the road supplied the remaining 40% of the soil loss from roads. Roads and skid trails had no designed drainage systems; runoff discharged onto the hillslope at 25 major discharge nodes from the logging road (690 m total length) and at 34 nodes from skid trails (2300 m). Sediment pathways were either fully or moderately connected to headwater channels at 64% of the logging road nodes, but at only 26% of the nodes emanating from skid trails. A detailed sediment budget revealed that 78% of the soil loss from the road system (including log landings) was delivered to the stream in the first 16 months after logging began. Most (90%) of the deposition from skid trails occurred below just three discharge nodes. Runoff from and onto skid trails often exacerbated the sediment connectivity to channels. Clearly, sediment discharge from logging roads was more highly connected to the stream than discharge from skid trails. Once in the channel, much of this sediment was temporarily stored in the floodplain and behind woody debris.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015EGUGA..17.1274B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015EGUGA..17.1274B"><span>Extreme erosion response after wildfire in the Upper Ovens, south-east Australia: Assessment of catchment scale connectivity by an intensive field survey</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Box, Walter; Keestra, Saskia; Nyman, Petter; Langhans, Christoph; Sheridan, Gary</p> <p>2015-04-01</p> <p>South-eastern Australia is generally regarded as one of the world's most fire-prone environments because of its high temperatures, low rainfall and flammable native Eucalyptus forests. Modifications to the landscape by fire can lead to significant changes to erosion rates and hydrological processes. Debris flows in particular have been recognised as a process which increases in frequency as a result of fire. This study used a debris flow event in the east Upper Ovens occurred on the 28th of February 2013 as a case study for analysing sediment transport processes and connectivity of sediment sources and sinks. Source areas were identified using a 15 cm resolution areal imagery and a logistic regression model was made based on fire severity, aridity index and slope to predict locations of source areas. Deposits were measured by making cross-sections using a combination of a differential GPS and a total station. In total 77 cross-sections were made in a 14.1 km2 sub-catchment and distributed based on channel gradient and width. A more detailed estimation was obtained by making more cross-sections where the volume per area is higher. Particle size distribution between sources and sink areas were obtained by combination of field assessment, photography imagery analyses and sieve and laser diffraction. Sediment was locally eroded, transported and deposited depending on factors such as longitude gradient, stream power and the composition of bed and bank material. The role of headwaters as sediment sinks changed dramatically as a result of the extreme erosion event in the wildfire affected areas. Disconnected headwaters became connected to low order streams due to debris flow processes in the contributing catchment. However this redistribution of sediment from headwaters to the drainage network was confined to upper reaches of the Ovens. Below this upper part of the catchment the event resulted in redistribution of sediment already existing in the channel through a combination of debris flows and hyperconcentrated flows. These results indicate that there is a stepwise outflow of sediment influencing long-term erosion rates and landform development.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=93047','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=93047"><span>Presence of Nitrate-Accumulating Sulfur Bacteria and Their Influence on Nitrogen Cycling in a Shallow Coastal Marine Sediment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Sayama, Mikio</p> <p>2001-01-01</p> <p>Nitrate flux between sediment and water, nitrate concentration profile at the sediment-water interface, and in situ sediment denitrification activity were measured seasonally at the innermost part of Tokyo Bay, Japan. For the determination of sediment nitrate concentration, undisturbed sediment cores were sectioned into 5-mm depth intervals and each segment was stored frozen at −30°C. The nitrate concentration was determined for the supernatants after centrifuging the frozen and thawed sediments. Nitrate in the uppermost sediment showed a remarkable seasonal change, and its seasonal maximum of up to 400 μM was found in October. The directions of the diffusive nitrate fluxes predicted from the interfacial concentration gradients were out of the sediment throughout the year. In contrast, the directions of the total nitrate fluxes measured by the whole-core incubation were into the sediment at all seasons. This contradiction between directions indicates that a large part of the nitrate pool extracted from the frozen surface sediments is not a pore water constituent, and preliminary examinations demonstrated that the nitrate was contained in the intracellular vacuoles of filamentous sulfur bacteria dwelling on or in the surface sediment. Based on the comparison between in situ sediment denitrification activity and total nitrate flux, it is suggested that intracellular nitrate cannot be directly utilized by sediment denitrification, and the probable fate of the intracellular nitrate is hypothesized to be dissimilatory reduction to ammonium. The presence of nitrate-accumulating sulfur bacteria therefore may lower nature's self-purification capacity (denitrification) and exacerbate eutrophication in shallow coastal marine environments. PMID:11472923</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/6773972','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/6773972"><span>Assessment of the geothermal resources of Illinois based on existing geologic data</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Vaught, T.L.</p> <p>1980-12-01</p> <p>Geothermal resources are not known to exist in Illinois. However, from the data presented on heat flow, thermal gradients, depth to basement, seismic activity, and low-conductivity sediments, inferences are drawn about the possible presence of resources in the state. (MHR)</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27595900','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27595900"><span>First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Laroche, Olivier; Wood, Susanna A; Tremblay, Louis A; Ellis, Joanne I; Lejzerowicz, Franck; Pawlowski, Jan; Lear, Gavin; Atalah, Javier; Pochon, Xavier</p> <p>2016-09-01</p> <p>At present, environmental impacts from offshore oil and gas activities are partly determined by measuring changes in macrofauna diversity. Morphological identification of macrofauna is time-consuming, expensive and dependent on taxonomic expertise. In this study, we evaluated the applicability of using foraminiferal-specific metabarcoding for routine monitoring. Sediment samples were collected along distance gradients from two oil platforms off Taranaki (New Zealand) and their physico-chemical properties, foraminiferal environmental DNA/RNA, and macrofaunal composition analyzed. Macrofaunal and foraminiferal assemblages showed similar shifts along impact gradients, but responded differently to environmental perturbations. Macrofauna were affected by hypoxia, whereas sediment grain size appeared to drive shifts in foraminifera. We identified eight foraminiferal molecular operational taxonomic units that have potential to be used as bioindicator taxa. Our results show that metabarcoding represents an effective tool for assessing foraminiferal communities near offshore oil and gas platforms, and that it can be used to complement current monitoring techniques. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25663374','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25663374"><span>Exposure to vancomycin causes a shift in the microbial community structure without affecting nitrate reduction rates in river sediments.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Laverman, Anniet M; Cazier, Thibaut; Yan, Chen; Roose-Amsaleg, Céline; Petit, Fabienne; Garnier, Josette; Berthe, Thierry</p> <p>2015-09-01</p> <p>Antibiotics and antibiotic resistance genes have shown to be omnipresent in the environment. In this study, we investigated the effect of vancomycin (VA) on denitrifying bacteria in river sediments of a Waste Water Treatment Plant, receiving both domestic and hospital waste. We exposed these sediments continuously in flow-through reactors to different VA concentrations under denitrifying conditions (nitrate addition and anoxia) in order to determine potential nitrate reduction rates and changes in sedimentary microbial community structures. The presence of VA had no effect on sedimentary nitrate reduction rates at environmental concentrations, whereas a change in bacterial (16S rDNA) and denitrifying (nosZ) community structures was observed (determined by polymerase chain reaction-denaturing gradient gel electrophoresis). The bacterial and denitrifying community structure within the sediment changed upon VA exposure indicating a selection of a non-susceptible VA population.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2002AGUSM.H31A..07M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2002AGUSM.H31A..07M"><span>Determining the Role of Sediment Deposition and Transport in the Formation and Maintenance of Tree Islands in the Florida Everglades</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mitchell-Bruker, S.; Childers, D.; Ross, M.; Leonard, L.; Solo-Gabriel, H.; Stothoff, S.</p> <p>2002-05-01</p> <p>Tree islands are a prominent feature in the Everglades ridge and slough wetlands. These tree islands are believed to be a remnant of the historical pre-drainage flow system. Within Everglades National Park, hardwood hammock and bayhead tree islands commonly form as teardrop-shaped mounds, rising above the sawgrass marsh. These tree islands are usually oriented along the direction of surface water flow, with the highest elevation and widest part of the island at the upstream head. The island narrows as it descends into the marsh at the downstream end, terminating in a tail that sometimes includes a zone of dead or dying sawgrass. The shape and orientation of the tree islands suggests that surface water flow has been instrumental in their formation, however occasional flow measurements indicate that the slow moving water of the Everglades does not provide sufficient energy to transport even moderate amounts of suspended sediment. This low flow velocity, coupled with the extremely low turbidity of the Everglades water suggests that if sediment transport and deposition processes are instrumental in forming tree islands, the process is probably occurring over short distances and long time intervals. It is also possible that concentration and transport of nutrients is an important element in tree island formation. Because the Everglades marsh is a low nutrient environment, processes that create areas of increased phosphorous concentration result in changes in the vegetation. Because many hardwood hammock and bayhead tree islands have heads that are situated on bedrock highs, the higher and drier elevation of the head allows for trees to grow. These trees could concentrate phosphorous either by acting as wildlife attractors, or by acting as \\x8Dphosphorous pumpsŒ, transporting groundwater with high concentrations of phosphorous through the roots to the tree. We are characterizing vegetation, litter fall, sediments, surface water flow, hydrologic gradients and nutrient gradients on tree islands and in the surrounding marsh. These data will be analyzed using statistical and hydrologic models to test the hypothesis that surface water flow is an essential force in forming and maintaining tree islands. A sediment and nutrient transport model is being developed to apply these data to scenarios for flow in a vegetated wetland. By constraining model parameters to the limits supported by these data, the full range of possible flow and transport scenarios can be tested in the model. These model results, along with statistical analysis will be used to support or reject the hypothesis that sediment and nutrient transport are key components in the formation of hardwood hammock and bay head tree islands.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EGUGA..14.5075B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EGUGA..14.5075B"><span>Flood magnitude-frequency analysis and sediment transport capacity rate assessment in a mixed alluvial-bedrock channel at Val Lumnezia, Eastern Switzerland, (Graubünden)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bekaddour, T.</p> <p>2012-04-01</p> <p>There is growing evidence in the literature that flood frequency has a large impact on the effective time scale of hillslope-derived sediment transport. Here, we present quantitative data on sediment transport in the mountainous Glenner River that drains the 120 km2-large Val Lumnezia basin, eastern Swiss Alps. The longitudinal profile of this stream is characterized by the presence of three ca. 500 m-long knickzones where channel gradients range from 0.02 to 0.2 mm-1 and the stream narrows to < 2 m wide gorges. Upstream and downstream of these knickzone reaches, the stream is flat with gradients < 0.01 mm-1, and cross-sectional widths ≥ 30 m. Measurements of the grain size distribution along the stream yield d84 values that range from ca. 10 to 28 cm, whereas the d50 values scatter around 10 cm. We explore the consequences of the channel morphology and the grain size distribution for the time scales of sediment transport by using a 1-D step-back water hydraulic model (HEC-RAS), to estimate hydraulic conditions at number of flood events and to predict hydraulic parameters and the boundary shear stress. The results reveal that along the knickzone reaches, a 2 years return period flood event Q2 is capable of mobilizing the d84 fraction where boundary critical shear stress exceeds the Shields critical shear stress value at incipient motion. In all other flat stream segments, the d84 fraction is barely attaining incipient motion where the critical boundary shear stress is approximately equal to the Shields critical shear stress at incipient motion. The results differ for smaller grain sizes , where Q2 is capable of mobilizing the d50 fraction along the entire stream. We anticipate that the overall effect of Q2 floods is the enrichment of coarse-grained sediment in the flat channel reaches by the entrainment of the d50 fraction, shifting to a better sorting of the bed particles. As a result, the degree of interlocking of coarse grain material may increases, which ultimately leads to enhanced stabilization of the channel bed and thus to a higher threshold of critical stress of incipient motion. Q10 floods, in contrast, are capable of moving both the d50 and d84 fractions, which implies that Q10 represents an effective flood that is results in the evacuation of hillslope-derived material over longer distances. Our results thus support the idea that the mechanisms and timescales of sediment transport in high mountain streams strongly depend on stream geometry and flood magnitude-frequency.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70015515','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70015515"><span>Transport of microspheres and indigenous bacteria through a sandy aquifer: Results of natural- and forced-gradient tracer experiments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Harvey, R.W.; George, L.H.; Smith, R.L.; LeBlanc, D.R.</p> <p>1989-01-01</p> <p>Transport of indigenous bacteria through sandy aquifer sediments was investigated in forced- and natural-gradient tracer teste. A diverse population of bacteria was collected and concentrated from groundwater at the site, stained with a DNA-specific fluorochrome, and injected back into the aquifer. Included with the injectate were a conservative tracer (Br- or Cl-) and bacteria-sized (0.2-1.3-??m) microspheres having carboxylated, carbonyl, or neutral surfaces. Transport of stained bacteria and all types and size classes of microspheres was evident. In the natural-gradient test, both surface characteristics and size of microspheres affected attenuation. Surface characteristics had the greatest effect upon retardation. Peak break-through of DAPI-stained bacteria (forced-gradient experiment) occurred well in advance of bromide at the more distal sampler. Transport behavior of bacteria was substantially different from that of carboxylated microspheres of comparable size. ?? 1988 American Chemical Society.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFMOS23C1233D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFMOS23C1233D"><span>Observational Data Analysis and Numerical Model Assessment of the Seafloor Interaction and Mobility of Sand and Weathered Oil Agglomerates (Surface Residual Balls) in the Surf Zone</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Dalyander, S.; Long, J.; Plant, N. G.; Penko, A.; Calantoni, J.; Thompson, D.; Mclaughlin, M. K.</p> <p>2014-12-01</p> <p>When weathered oil is transported ashore, such as during the Deepwater Horizon oil spill, it can mix with suspended sediment in the surf zone to create heavier-than-water sand and oil agglomerates in the form of mats several centimeters thick and tens of meters long. Broken off pieces of these mats and smaller agglomerates formed in situ (called Surface Residual Balls, SRBs) can cause beach re-oiling months to years after the initial spill. The physical dynamics of these SRBs in the nearshore, where they are larger (cm-scale) and less dense than natural sediment, are poorly understood. In the current study, SRB mobility and seafloor interaction is investigated through a combination of laboratory and field experiments with pseudo-SRBs developed to be physically stable proxies for genuine agglomerates. Formulations for mobility prediction based on comparing estimated shear stress to the critical Shields and modified Shields parameters developed for mixed sediment beds are assessed against observations. Processes such as burial, exhumation, and interaction with bedforms (e.g., migrating ripples) are also explored. The observations suggest that incipient motion estimates based on a modified Shields parameter have some skill in predicting SRB movement, but that other forcing mechanisms such as pressure gradients may be important under some conditions. Additionally, burial and exhumation due to the relatively high mobility of sand grains are confirmed as key processes controlling SRB dynamics in the surf zone. This work has broad implications for understanding surf zone sediment transport at the short timescale associated with mobilizing sand grains and SRBs as well as at the longer timescales associated with net transport patterns, sediment budgets, and bed elevation changes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22961490','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22961490"><span>Pesticide pressure and fish farming in barrage pond in Northeastern France. Part II: residues of 13 pesticides in water, sediments, edible fish and their relationships.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lazartigues, Angélique; Thomas, Marielle; Cren-Olivé, Cécile; Brun-Bellut, Jean; Le Roux, Yves; Banas, Damien; Feidt, Cyril</p> <p>2013-01-01</p> <p>Residues of pesticides in fish farming productions from barrage ponds are seldom studied in spite of increasing health questionings and environmental concerns. The purpose of this study is to establish the pesticide contamination profiles of sediments and edible fish from five ponds in Northeastern France. Multi-residues method and liquid chromatography-tandem mass spectrometry analysis were used to quantify 13 pesticides (azoxystrobin, carbendazim, clomazone, diflufenican, dimethachlor, fluroxypyr, iprodion, isoproturon, mesosulfuron-methyl, metazachlor, napropamid, quizalofop and thifensulfuron-methyl). Ten sediments and 143 muscles samples were analysed, corresponding to two successive fishing campaigns (first fishing date and second fishing date (P2), about 1 year later) on five sites (noted C-0, C-25, C-45, C-75 and C-85 to express the increasing gradient of crop area). Isoproturon was present in all sediments samples (1.8-56.4 μg/kg dry weight). During P2 period, carbendazim was quantified in the fish of site C-0 (0.09 ± 0.02, 0.2 ± 0.1 and 0.17 ± 0.06 μg/kg wet weight (ww) for roach, carp and perch, respectively). Metazachlor was only quantified in perch of the site C-25 (0.13 ± 0.02 μg/kg ww). Concentrations of isoproturon were similar for the sites C-45 and C-75 with 0.4 ± 0.1 and 0.75 ± 0.06 μg/kg ww for carp and perch, respectively. Contamination of fish reflected generally concentrations in surroundings. Isoproturon was the most concentrated and its main source was water for perch while carp was exposed through both water and sediments, highlighting their life strategies in pond.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011NatGe...4...50L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011NatGe...4...50L"><span>Carbon release by off-axis magmatism in a young sedimented spreading centre</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lizarralde, Daniel; Soule, S. Adam; Seewald, Jeff S.; Proskurowski, Giora</p> <p>2011-01-01</p> <p>Continental rifting creates narrow ocean basins, where coastal ocean upwelling results in high biological productivity and organic-rich sedimentation. In addition, topographic gradients promote silicate weathering, which consumes atmospheric CO2 (ref. 1). The carbon flux associated with these processes has led to the suggestion that rifting may cool the atmosphere, leading in some cases to glaciation and even a snowball Earth scenario. Guaymas basin, within the Gulf of California, is a young spreading system where new igneous crust is formed beneath a layer of organic-rich sediment that is 1-2kmthick. Here we present seismic data from Guaymas basin that image recent, basin-wide magmatic intrusions into sediments; sonar backscatter and seafloor photographs that indicate numerous, broadly distributed chemosynthetic seafloor biological communities, and geochemical analyses of water samples suggesting that the methane that supports these communities is derived from magma-driven thermogenic alteration of sediments. Our results suggest that active shallow magmatism releases carbon from sediments up to 50km away from the plate boundary. This is a much larger area than the less than 5km found at unsedimented mid-ocean ridges, and than previously recognized. We conclude that thick sediments may promote broad magmatism, reducing the efficiency of natural carbon sequestration within young sedimented rifts.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li class="active"><span>22</span></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_22 --> <div id="page_23" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li class="active"><span>23</span></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="441"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015EGUGA..17.6677T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015EGUGA..17.6677T"><span>Distribution and stable isotope composition of leaf wax n-alkanes as tracers for organic matter transport along hydrological transects in the NW Argentine Andes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Tofelde, Stefanie; Sachse, Dirk; Schildgen, Taylor; Strecker, Manfred R.</p> <p>2015-04-01</p> <p>The burial of organic matter in marine sediments represents the main long-term sink for reduced carbon in the global carbon cycle, with the fluvial system being the predominant transport mechanism. Organic matter deposited in marine and continental sediments contains valuable information on ecological and climatic conditions, and organic proxy data is thus often used in paleoclimate research. To use sedimentary records to investigate past environmental conditions in the terrestrial realm, processes dictating the transport of organic matter, including spatial and temporal resolution as well as the influence of climatic and tectonic processes, have to be understood. In this study, we test if a lipid biomarker based approach can be used to trace present-day organic matter sources in a fluvial watershed draining two intermontane basins in the southern-central Andes of NW Argentina, a tectonically active region with pronounced topographic, rainfall, and vegetation gradients. We investigated the distribution of long-chain leaf-wax n-alkanes, a terrestrial plant biomarker (and as such representative of terrestrially sourced carbon), in river sediments and coarse particulate organic matter (CPOM) along two altitudinal and hydrological gradients. We used n-alkane abundances and their stable carbon and hydrogen isotopic values as three independent parameters for source discrimination. Additionally, we analyzed the control of environmental parameters on the isotopic signatures in leaf-wax n-alkanes. The general pattern of n-alkane distribution in river sediments and CPOM samples in our study area suggest that vascular plants are the major source of riverine organic matter. The stable carbon isotopic composition of nC29 alkanes suggests a nearly exclusive input of C3 vegetation. Although C4 plants are present in the lower catchment areas, the total percentage is too low to have a detectable influence on the carbon isotopic composition in river sediment and CPOM samples. Considering environmental parameters, nC29 alkane δ13C values are significantly correlated with mean annual rainfall in the respective catchment area, with less negative δ13C values in drier areas (r = - 0.63, p < 0.01). The variability in stable hydrogen isotopic composition (δD) of nC29 alkanes is determined mostly by the δD value of the source water and aridity. We find that the apparent fractionation (?app), defined as the difference in hydrogen isotopic composition of plant source waters and synthesized leaf-wax n-alkanes, is significantly correlated with aridity (r = -0.65, p < 0.005), with a smaller apparent fractionation in drier areas, as well as with mean annual rainfall (r = -0.59, p < 0.01), relative humidity (r = -0.56, p < 0.02), and actual evapotranspiration (r = -0.53, p < 0.05). Our data indicate that vascular plants are the major source of riverine organic matter, with their stable carbon and hydrogen isotopic compositions influenced by climatic parameters. Thus, on spatial scales covering large gradients in environmental parameters, the analysis of leaf-wax n-alkanes can be used for organic matter source assessment in orogenic settings.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012EGUGA..14.6645D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012EGUGA..14.6645D"><span>Geomicrobiology of Fe-rich crusts in Lake Superior sediment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Dittrich, M.; Monreau, L.; Quazi, S.; Raoof, B.; Chesnyuk, A.; Katsev, S.; Fulthorpe, R.</p> <p>2012-04-01</p> <p>The limnological puzzles of Lake Superior are increasingly attracting scientists, and very little is known about the sediments and their associated microflora. The sediments are organic poor (less than 5%C) and the lake is deep oligotrophic, with water temperatures at the bottom around 3C. Previous studies reveal Fe-rich layers in the sediments at multiple loccations around the lake. The origin and mechanisms of formation of this layer remain unknown. In this study we investigated geochemical and microbiological processes that may lead to the formation of a two cm thick iron layer about 10 cm below the sediment surface. Sediment cores from two stations (EM, 230m water depth and ED, 310m water depth) in the East Basin were used. We monitored oxygen and pH depth profiles with microsensors, porewater and sediment solid matter were analyzed for nutrient and metal contents. Furthermore, phosphorus and iron sequantial extractions of sediment cores have been perfomed. The total cell count was determined using DAPI epifluoresence microscopy. DNA was extracted from the sediment samples and 16S ribosonal RNA amplicons were analyzed with denaturing gradient gel electrophoresis (DGGE). For a more in depth analysis, DNA samples from 8-10 cm and 10-12 cm were sent to the Research and Testing Lab (Texas) for pyrosequencing of 16S rRNA gene amplicons amplified using barcoded universal primers 27f-519r. The scanning electron microscope (SEM) images from the iron layer 10-12cm show filaments that were encrusted with spheres ca. 20 nm in diameter. SEM observations of thin sections also indicate the presence of very fine particles showing various morphologies. Analyses of the deposit material by SEM and energy dispersive X-ray spectroscopy (EDS) indicate that bacteria cells surfaces served as nucleation surfaces for Fe-oxide formation. EDS line-scans through bacterial cells covered with precipitates reveal phosphorus and carbon peaks at interface between cell surface and Fe-particles. The cluster analysis performed on the DGGE separation of ribosomal RNA gene fragments revealed that the two iron layers were not highly similar to each other. We obtained a total of 26,062 16S rRNA gene sequence reads from the two iron layers and the layers directly above them, which were clustered into operational taxonomic units sharing 80% similarity or more. 64-70% of these clusters could not be classified below the phylum level. While the 8-10 cm sediment layers were dominated (46.5% of reads) by relatives of Paenisporosarcina, the iron layers contained far fewer gram positive organisms, far more proteobacteria, and an a high proportion of Nitrospira species which show relatively high similarity to organisms found in an iron II rich seep.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016JMS...161...11S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016JMS...161...11S"><span>Flood regime as a driver of the distribution of mangrove and salt marsh species in a subtropical estuary</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Spier, Daphne; Gerum, Humberto L. N.; Noernberg, Maurício A.; Lana, Paulo C.</p> <p>2016-09-01</p> <p>Tidal patterns of the subtropical Paranaguá Estuarine Complex, in southern Brazil, are strongly affected by episodic cold fronts and by the coastal geometry and bottom topography, resulting in high temporal variability and marked gradients in flood regime. We delimit tolerance ranges of submersion and exposure for representative plant and animal species from local mangroves and salt marshes, through a quantitative analysis of flooding patterns in three estuarine sectors. Our results are consistent with flood regime being the leading factor on how species are distributed over the intertidal flats of the PEC. Subleading factors might be related to salinity, sediment composition and nutrient flow.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017JHyd..551...92G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017JHyd..551...92G"><span>Evaluation of the dynamic mobilization of vanadium in tributary sediments of the Three Gorges Reservoir after water impoundment</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Gao, Bo; Gao, Li; Zhou, Yang; Xu, Dongyu; Zhao, Xingjuan</p> <p>2017-08-01</p> <p>The Three Gorges Reservoir (TGR) is the largest water resource protection zone in China, and environmental safety is crucial to its operation. For both aqueous and sediment phases, diffusive gradients in thin films (DGT), total vanadium (V) concentration (CTotal-V), and community Bureau of Reference (BCR) sequential extraction data were used to measure the pollution characteristics, horizontal and vertical distributions of DGT-labile V, and the dynamic mobilization of V in a typical tributary (the Meixi River) of the TGR. The results showed that CTotal-V in the surface sediments were obviously higher than the background values in sediment and soil, indicating a potential anthropogenic input of V in this area. A positive relationship was found between total organic carbon (TOC) and CTotal-V in the sediments, indicating that the pollution characteristics of V were associated with TOC. In addition, horizontal and vertical distributions of the fluxes of DGT-labile V (FDGT-V) varied among the four DGT probes. In the same DGT probe, the horizontal distributions (0-6 mm, 6-12 mm and 12-18 mm) of FDGT-V were similar in the overlying water; however, the values showed a poor coincidence with those recorded in the sediment. The vertical distribution of FDGT-V in the same DGT probe showed similar tendencies. In fact, CDGT-V is significantly negatively correlated with CDGT-Fe, demonstrating that V had an inversely diffusive tendency with Fe. Moreover, diffusion fluxes of V at the sediment-water interface illustrated that the release characteristics of V varied among the sampling sites. In addition, the BCR fraction of V in the surface sediments of the four sampling sites showed that V mainly existed in the residual fraction (88.04-88.57%). The concentrations of DGT-labile V (CDGT-V) were considerably lower than the non-residual fractions (the sum of exchangeable, reducible, and oxidizable fractions) measured by BCR sequential extraction. Correlation analysis showed that CDGT-V had no correlation with non-residual V fractions, indicating that it is doubtful whether BCR extraction alone can be used to predict the bioavailability of V in this study.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011Geomo.135..262K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011Geomo.135..262K"><span>Soilscapes in the dynamic tropical environments: The case of Sierra Madre del Sur</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Krasilnikov, P. V.; García-Calderón, N. E.; Ibáñez-Huerta, A.; Bazán-Mateos, M.; Hernández-Santana, J. R.</p> <p>2011-12-01</p> <p>The paper gives an analysis of the pattern of soil cover of the Sierra Madre del Sur, one of the most complex physiographic regions of Mexico. It presents the results of the study of four latitudinal traverses across the region. We show that the distribution of soils in the Sierra Madre del Sur is associated with major climatic gradients, namely by vertical bioclimatic zonality in the mountains and by the effect of mountain shadow. Altitudinal distribution of soil-bioclimatic belts is complex due to non-uniform gradients of temperature and rainfall, and varies with the configuration of the mountain range. The distribution of soils is associated with the erosion and accumulation rates both on mountain slopes and in river valleys. The abundance of poorly developed soils in (semi)arid areas was ascribed to high erosion rate rather than to low pedogenetic potential. The formation of soil mosaic at a larger scale might be ascribed to the complex net of gully erosion and to the system of seismically triggered landslides of various ages. In the valleys, the distribution of soils depends upon the dynamics of sedimentation and erosion, which eventually exposes paleosols. Red-colored clayey sediments are remains of ancient weathering and pedogenesis. Their distribution is associated mainly with the intensity of recent slope processes. The soil cover pattern of the Sierra Madre del Sur cannot be explained by simplified schemes of bioclimatic zonality. The soil ranges can be explained by the distribution of climates, lithology, complex geological history of the region, and recent geomorphological processes.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/biblio/1095700-macroinvertebrate-community-responses-gravel-augmentation-high-gradient-southeastern-regulated-river','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/1095700-macroinvertebrate-community-responses-gravel-augmentation-high-gradient-southeastern-regulated-river"><span>Macroinvertebrate community responses to gravel augmentation in a high-gradient, Southeastern regulated river</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>McManamay, Ryan A; Orth, Dr. Donald J; Dolloff, Dr. Charles A</p> <p>2013-01-01</p> <p>Sediment transport, one of the key processes of river systems, is altered or stopped by dams, leaving lower river reaches barren of sand and gravel, both of which are essential habitat for fish and macroinvertebrates. One way to compensate for losses in sediment is to supplement gravel to river reaches below impoundments. Because gravel addition has become a widespread practice, it is essential to evaluate the biotic response to restoration projects in order to improve the efficacy of future applications. The purpose of our study was to evaluate the response of the macroinvertebrate community to gravel addition in a high-gradient,more » regulated river in western North Carolina. We collected benthic macroinvertebrate samples from gravel-enhanced areas and unenhanced areas for 1 season before gravel addition, and for 4 seasons afterwards. Repeated measures multivariate analysis of variance indicated that the responses of macroinvertebrates to gravel addition were generally specific to individual taxa or particular functional feeding groups and did not lead to consistent patterns in overall family richness, diversity, density, or evenness. Non-metric multi-dimensional scaling showed that shifts in macroinvertebrate community composition were temporary and dependent upon site conditions and season. Correlations between macroinvertebrate response variables and substrate microhabitat variables existed with or without the inclusion of data from enhanced areas, which suggests that substrate-biotic relationships were present before gravel addition. A review of the current literature suggests that the responses of benthic macroinvertebrates to substrate restoration are inconsistent and dependent upon site conditions and the degree habitat improvement of pre-restoration site conditions.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017ECSS..185...77B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017ECSS..185...77B"><span>Unusual algal turfs associated with the rhodophyta Phyllophora crispa: Benthic assemblages along a depth gradient in the Central Mediterranean Sea</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bonifazi, Andrea; Ventura, Daniele; Gravina, Maria Flavia; Lasinio, Giovanna Jona; Belluscio, Andrea; Ardizzone, Gian Domenico</p> <p>2017-02-01</p> <p>Macroalgal assemblages dominated by the turf-forming alga Phyllophora crispa are described in detail for the first time in the Central Mediterranean Sea. This particular form of algal growth, which comprises an upper mixed layer of multiple algal species with a basal stratum formed by entangled thalli of P. crispa, was observed for the first time in 2012 along the promontory of Punta del Lazzaretto (Giglio Island, Italy). In this study, this assemblage was analysed to document the diversity of macroalgae and invertebrate associated communities and assess their distribution along a depth gradient. The algae forming turfs grow directly on the rock at low depth up to 10-15 m depth, while they grow above P. crispa from 15 m to 35 m depth, resulting in luxuriant beds covering up to 100% of the substrate. Multivariate analysis revealed clear differences regarding algae and invertebrate species richness and abundance between shallow and deep strata because of the dominance of Phyllophora crispa at depths greater than 20 m. The long laminal thalli of P. crispa favoured sessile fauna colonization, while the vagile species were principally linked to the architectural complexity of the turf layer created by the P. crispa, which increased the microhabitat diversity and favoured sediment deposition within the turf layer. The complex structures of these turf assemblages and their widespread distribution along the whole coast of the island suggest a well-established condition of the communities linked to the high natural sedimentation rate observed in the area.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61906&keyword=System+AND+recommendation&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61906&keyword=System+AND+recommendation&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>MICROBIAL ACTIVITY: AN INDICATOR OF WATERSHED IMPACTRS ON RIVERINE COASTAL WETLANDS OF LAKE MICHIGAN</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>The loss of watershed storage and/or forest cover due to land use, is expected to increase nutrient levels and sedimentation in the riverine coastal wetlands. Watershed indicators should be able to distinguish between degradation gradients, separating reference, transitional, and...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70035537','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70035537"><span>River restoration strategies in channelized, low-gradient landscapes of West Tennessee, USA</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Smith, D.P.; Diehl, T.H.; Turrini-Smith, L. A.; Maas-Baldwin, J.; Croyle, Z.</p> <p>2009-01-01</p> <p>West Tennessee has a complex history of watershed disturbance, including agricultural erosion, channelization, accelerated valley sedimentation, and the removal and reestablishment of beaver. Watershed management has evolved from fl oodplain drainage via pervasive channelization to include local drainage canal maintenance and local river restoration. Many unmaintained canals are undergoing excessive aggradation and complex channel evolution driven by upland erosion and low valley gradient. The locus of aggradation in fully occluded canals (valley plugs) moves up-valley as sediment continues to accumulate in the backwater behind the plug. Valley plugs that cause canal avulsion can lead to redevelopment of meandering channels in less disturbed areas of the fl oodplain, in a process of passive self-restoration. Some valley plugs have brought restored fl oodplain function, reoccupation of extant historic river channels, and formation of a "sediment shadow" that protects downstream reaches from excess sedimentation. Despite the presence of numerous opportunities, there is presently no mechanism for including valley plugs in mitigation projects. In 1997 a survey of 14 reference reach cross sections documented relations between drainage area and bankfull geometry of relatively unmodified streams in West Tennessee. Reassessment of seven of those sites in 2007 showed that one had been dammed by beaver and that two sites could not be analyzed further because of signifi cant vertical or lateral instability. In contrast to other regions of North America, the results suggest that stream channels in this region fl ood more frequently than once each year, and can remain out of banks for several weeks each year. ?? 2009 Geological Society of America.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1168364','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1168364"><span>The macromolecular properties of blood-group-specific glycoproteins. Characterization of a series of fractions obtained by solvent fractionation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Creeth, J. Michael; Bhaskar, K. Ramakrishnan; Donald, Alastair S. R.; Morgan, Walter T. J.</p> <p>1974-01-01</p> <p>1. The glycoprotein components of a human ovarian-cyst fluid were isolated by a solvent [95% (w/w) phenol]-extraction procedure; the phenol-insoluble water-soluble glycoprotein was further fractionated by (NH4)2SO4 and by ethanol to yield eight fractions. 2. The fractions were analysed in terms of amino acids, fucose, galactose, N-acetylglucosamine, N-acetylgalactosamine and sialic acid. Variations occurred, particularly in the proportion of peptide; these were partly correlated with varying extent of serological activity. 3. The fractions were characterized physicochemically in terms of buoyant density and degree of spreading in a density gradient, sedimentation velocity and molecular weight; their partial specific volumes and specific refraction increments were also determined. 4. The fractions showed wide variations in their sedimentation-velocity and density-gradient patterns, and gave evidence of pauci-dispersity in density. The fraction regarded as the most typical blood-group-specific glycoprotein sedimented as a single rapidly spreading peak and was of high molecular weight. 5. Significant correlations were observed between the physical properties of the glycoprotein fractions and the amount of their peptide component. The buoyant densities and sedimentation coefficients varied in a manner that suggested the existence of two families of glycoproteins. 6. It is suggested that variability in the extent of glycosylation, or in the degree of cross-linking, might account for the two families of glycoproteins, and that the extent of cross-linkage might also be a factor determining the solubility of these glycoproteins in hot saturated (NH4)2SO4. ImagesFig. 1.PLATE 1 PMID:4219280</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016EGUGA..18.9591N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016EGUGA..18.9591N"><span>Small watershed response to porous rock check dams in a semiarid watershed</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Nichols, Mary; Polyakov, Viktor; Nearing, Mark</p> <p>2016-04-01</p> <p>Rock check dams are used throughout the world as technique for mitigating erosion problems on degraded lands. Increasingly, they are being used in restoration efforts on rangelands in the southwestern US, however, their impact on watershed response and channel morphology is not well quantified. In 2008, 37 porous rock structures were built on two small (4.0 and 3.1 ha) instrumented watersheds on an alluvial fan at the base of the Santa Rita Mountains in southern Arizona, USA. 35 years of historical rainfall and runoff, and sediment data are available to compare with 7 years of data collected after check dam construction. In addition, post construction measurements of channel geometry and longitudinal channel profiles were compared with pre-construction measurements to characterize the impact of check dams on sediment retention and channel morphology. The primary impact of the check dams is was retention of channel sediment and reduction in channel gradient; however response varied between the proximal watersheds with 80% of the check dams on one of the watersheds filled to 100% of their capacity after 7 runoff seasons. In addition, initial impact on precipitation runoff ratios is was not persistent. The contrasting watershed experiences lower sediment yields and only 20% of the check dams on this watershed are were filled to capacity and continue to influence runoff during small events. Within the watersheds the mean gradient of the channel reach immediately upstream of the structures has been reduced by 35% (from 0.061 to 0.039) and 34% on (from 0.071 to 0.047).</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008AGUFM.H33K..07T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008AGUFM.H33K..07T"><span>Locality and nonlocality in geomorphic transport laws: Implications of a particle-based model of hillslope evolution</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Tucker, G. E.; Bradley, D. N.</p> <p>2008-12-01</p> <p>Many geomorphic transport laws assume that the transport process is local, meaning that the space and time scales of particle displacement are short relative to those of the system as a whole. This assumption allows one to express sediment flux in terms of at-a-point properties such as the local surface gradient. However, while this assumption is quite reasonable for some processes (for example, grain displacement by raindrop impact), it is questionable for others (such as landsliding). Moreover, particle displacement distance may also depend on slope angle, becoming longer as gradient increases. For example, the average motion distance during sediment ravel events on very steep slopes may approach the length of the entire hillslope. In such cases, the mass flux through a given point may depend not only on the local topography but also on topography some distance upslope, thus violating the locality assumption. Here we use a stochastic, particle- based model of hillslope evolution to gain insight into the potential for, and consequences of, nonlocality in sediment transport. The model is designed as a simple analogy for a host of different processes that displace sediment grains on hillslopes. The hillslope is represented as a two-dimensional pile of particles. These particles undergo quasi-random motion according to the following rules: (1) during each iteration, a particle and a direction are selected at random; (2) the particle hops in the direction of motion with a probability that depends on the its height relative to that of its immediate neighbor; (3) the particle continues making hops in the same direction and with the same probability dependence, until coming to rest or exiting the base of the slope. The topography and motion statistics that emerge from these rules show a range of behavior that depends on a dimensionless relief parameter. At low relief, hillslope shape is parabolic, mean displacement length is on the order of two particle widths, and the probability distribution of displacement length is thin- tailed (approximately exponential). At high relief, hillslopes become planar, average displacement length increases by an order of magnitude, and the displacement-length distribution becomes heavy-tailed (albeit truncated at the slope length). Across the spectrum of relief values, the relationship between mean flux and gradient resembles the family of nonlinear flux-gradient curves that has been used to model hillslope evolution. We compare the emergent morphology and transport statistics with linear, nonlinear, and fractional diffusion models of hillslope transport.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.usgs.gov/of/1979/0593/report.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/of/1979/0593/report.pdf"><span>In situ determination of heat flow in unconsolidated sediments</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Sass, J.H.; Kennelly, J.P.; Wendt, W.E.; Moses, T.H.; Ziagos, J.P.</p> <p>1979-01-01</p> <p>Subsurface thermal measurements are the most effective, least ambiguous tools for identifying and delineating possible geothernml resources. Measurements of thermal gradient in the upper few tens of meters generally are sufficient to outline the major anomalies, but it is always desirable to combine these gradients with reliable estimates of thermal conductivity to provide data on the energy flux and to constrain models for the heat sources responsible for the observed, near-surface thermal anomalies. The major problems associated with heat-flow measurements in the geothermal exploration mode are concerned with the economics of casing and/or grouting holes, the repeated site visits necessary to obtain equilibrium temperature values, the possible legal liability associated with the disturbance of underground aquifers, the surface hazards presented by pipes protruding from the ground, and the security problems associated with leaving cased holes open for periods of weeks to months. We have developed a technique which provides reliable 'real-time' determinations of temperature, thermal conductivity, and hence, of heat flow during the drilling operation in unconsolidated sediments. A combined temperature, gradient, and thermal conductivity experiment can be carried out, by driving a thin probe through the bit about 1.5 meters into the formation in the time that would otherwise be required for a coring trip. Two or three such experiments over the depth range of, say, 50 to 150 meters provide a high-quality heat-flow determination at costs comparable to those associated with a standard cased 'gradient hole' to comparable depths. The hole can be backfilled and abandoned upon cessation of drilling, thereby eliminating the need for casing, grouting, or repeated site visits.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70194487','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70194487"><span>Geologic controls on submarine slope failure along the central U.S. Atlantic margin: Insights from the Currituck Slide Complex</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Hill, Jenna C.; Brothers, Daniel S.; Craig, Bradley K.; ten Brink, Uri S.; Chaytor, Jason D.; Flores, Claudia</p> <p>2017-01-01</p> <p>Multiple styles of failure, ranging from densely spaced, mass transport driven canyons to the large, slab-type slope failure of the Currituck Slide, characterize adjacent sections of the central U.S. Atlantic margin that appear to be defined by variations in geologic framework. Here we use regionally extensive, deep penetration multichannel seismic (MCS) profiles to reconstruct the influence of the antecedent margin physiography on sediment accumulation along the central U.S. Atlantic continental shelf-edge, slope, and uppermost rise from the Miocene to Present. These data are combined with high-resolution sparker MCS reflection profiles and multibeam bathymetry data across the Currituck Slide Complex. Pre-Neogene allostratigraphic horizons beneath the slope are generally characterized by low gradients and convex downslope profiles. This is followed by the development of thick, prograded deltaic clinoforms during the middle Miocene. Along-strike variations in morphology of a regional unconformity at the top of this middle Miocene unit appear to have set the stage for differing styles of mass transport along the margin. Areas north and south of the Currituck Slide are characterized by oblique margin morphology, defined by an angular shelf-edge and a relatively steep (> 8°), concave slope profile. Upper slope sediment bypass, closely spaced submarine canyons, and small, localized landslides confined to canyon heads and sidewalls characterize these sectors of the margin. In contrast, the Currituck region is defined by a sigmoidal geometry, with a rounded shelf-edge rollover and gentler slope gradient (< 6°). Thick (> 800 m), regionally continuous stratified slope deposits suggest the low gradient Currituck region was a primary depocenter for fluvial inputs during multiple sea level lowstands. These results imply that the rounded, gentle slope physiography developed during the middle Miocene allowed for a relatively high rate of subsequent sediment accumulation, thus providing a mechanism for compaction–induced overpressure that preconditioned the Currituck region for failure. Detailed examination of the regional geological framework illustrates the importance of both sediment supply and antecedent slope physiography in the development of large, potentially unstable depocenters along passive margins.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015CSR...108...25W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015CSR...108...25W"><span>Spatio-temporal distribution patterns of the epibenthic community in the coastal waters of Suriname</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Willems, Tomas; De Backer, Annelies; Wan Tong You, Kenneth; Vincx, Magda; Hostens, Kris</p> <p>2015-10-01</p> <p>This study aimed to characterize the spatio-temporal patterns of the epibenthic community in the coastal waters of Suriname. Data were collected on a (bi)monthly basis in 2012-2013 at 15 locations in the shallow (<40 m) coastal area, revealing three spatially distinct species assemblages, related to clear gradients in some environmental parameters. A species-poor coastal assemblage was discerned within the muddy, turbid-water zone (6-20 m depth), dominated by Atlantic seabob shrimp Xiphopenaeus kroyeri (Crustacea: Penaeoidea). Near the 30 m isobath, sediments were much coarser (median grain size on average 345±103 μm vs. 128±53 μm in the coastal assemblage) and water transparency was much higher (on average 7.6±3.5 m vs. 2.4±2.1 m in the coastal assemblage). In this zone, a diverse offshore assemblage was found, characterized by brittle stars (mainly Ophioderma brevispina and Ophiolepis elegans) and a variety of crabs, sea stars and hermit crabs. In between both zones, a transition assemblage was noted, with epibenthic species typically found in either the coastal or offshore assemblages, but mainly characterized by the absence of X. kroyeri. Although the epibenthic community was primarily structured in an on-offshore gradient related to depth, sediment grain size and sediment total organic carbon content, a longitudinal (west-east) gradient was apparent as well. The zones in the eastern part of the Suriname coastal shelf seemed to be more widely stretched along the on-offshore gradient. Although clear seasonal differences were noted in the environmental characteristics (e.g. dry vs. rainy season), this was not reflected in the epibenthic community structure. X. kroyeri reached very high densities (up to 1383 ind 1000 m-²) in the shallow coastal waters of Suriname. As X. kroyeri is increasingly exploited throughout its range, the current study provides the ecological context for its presence and abundance, which is crucial for an ecosystem approach and the sustainable management of this commercially important species and its habitat.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1254436','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1254436"><span></span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Knox, Anna Sophia; Paller, Michael H.; Milliken, Charles E.</p> <p></p> <p>One challenge to all remedial approaches for contaminated sediments is the continued influx of contaminants from uncontrolled sources following remediation. We investigated the effects of ongoing contamination in mesocosms employing sediments remediated by different types of active and passive caps and in-situ treatment. Our hypothesis was that the sequestering agents used in active caps and in situ treatment will bind elements (arsenic, chromium, cadmium, cobalt, copper, nickel, lead, selenium, and zinc) from ongoing sources thereby reducing their bioavailability and protecting underlying remediated sediments from recontamination. Most element concentrations in surface water remained significantly lower in mesocosms with apatite and mixedmore » amendment caps than in mesocosms with passive caps (sand), uncapped sediment, and spike solution throughout the 2520 hour experiment. Element concentrations were significantly higher in Lumbriculus variegatus from untreated sediment than in Lumbriculus from most active caps. Moreover, Pearson correlations between element concentrations in Lumbriculus and metal concentrations in the top 2.5 cm of sediment or cap measured by diffusive gradient in thin films (DGT) sediment probes were generally strong (as high as 0.98) and significant (p<0.05) for almost all tested elements. Metal concentrations in both Lumbriculus and sediment/cap were lowest in apatite, mixed amendment, and activated carbon treatments. Finally, these findings show that some active caps can protect remediated sediments by reducing the bioavailable pool of metals/metalloids in ongoing sources of contamination.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29236006','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29236006"><span>Electricity generation through a photo sediment microbial fuel cell using algae at the cathode.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Neethu, B; Ghangrekar, M M</p> <p>2017-12-01</p> <p>Sediment microbial fuel cells (SMFCs) are bio-electrochemical devices generating electricity from redox gradients occurring across the sediment-water interface. Sediment microbial carbon-capture cell (SMCC), a modified SMFC, uses algae grown in the overlying water of sediment and is considered as a promising system for power generation along with algal cultivation. In this study, the performance of SMCC and SMFC was evaluated in terms of power generation, dissolved oxygen variations, sediment organic matter removal and algal growth. SMCC gave a maximum power density of 22.19 mW/m 2 , which was 3.65 times higher than the SMFC operated under similar conditions. Sediment organic matter removal efficiencies of 77.6 ± 2.1% and 61.0 ± 1.3% were obtained in SMCC and SMFC, respectively. With presence of algae at the cathode, a maximum chemical oxygen demand and total nitrogen removal efficiencies of 63.3 ± 2.3% (8th day) and 81.6 ± 1.2% (10th day), respectively, were observed. The system appears to be favorable from a resources utilization perspective as it does not depend on external aeration or membranes and utilizes algae and organic matter present in sediment for power generation. Thus, SMCC has proven its applicability for installation in an existing oxidation pond for sediment remediation, algae growth, carbon conversion and power generation, simultaneously.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009EGUGA..11.3547V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009EGUGA..11.3547V"><span>Scale and processes dominating soil erosion and sediment transport: case studies from Indonesia and Australia</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>van Dijk, A. I. J. M.; Bruijnzeel, L. A.</p> <p>2009-04-01</p> <p>Soil erosion and sediment transport at different scales of space and time are dominated by a variable set of landscape properties and processes. Research results from West Java (Indonesia) and southeast Australia are presented, taking a natural resources management perspective. The dominant role of vegetation and soil health, rainfall infiltration, and connectivity between hillslope and stream are elaborated on. In humid volcanic upland West Java, vegetative cover and associated infiltration capacity are the dominant control on surface runoff and sediment generation, with additional variation attributed to slope and soil surface structure. Use of process models to replicate and upscale field measurements highlighted that a predictive theory to link vegetative cover and infiltration capacity is lacking, and that full knowledge of the covariance between terrain attributes that promote sediment generation is needed for process based modelling. At the hillslope to catchment scale, slope gradient and a less erodible substrate became additional constraints on sediment yield. A conceptual framework relating processes, scale and sediment delivery ratio was developed. In water-limited southeast Australia, measures to reduce erosion and sediment production generally aim to intercept surface runoff, allowing runoff to infiltrate and sediment to settle on vegetated buffer strips or roadsides or in leaky dams. It is illustrated how remote sensing can help to assess the sources of sediment and hydrological connectivity at different scales and to identify opportunities for mitigation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010EGUGA..12.7988C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010EGUGA..12.7988C"><span>Reconstructing temperatures from lake sediments in northern Europe: what do the biological proxies really tell us?</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cunningham, Laura; Holmes, Naomi; Bigler, Christian; Dadal, Anna; Bergman, Jonas; Eriksson, Lars; Brooks, Stephen; Langdon, Pete; Caseldine, Chris</p> <p>2010-05-01</p> <p>Over the past two decades considerable effort has been devoted to quantitatively reconstructing temperatures from biological proxies preserved in lake sediments, via transfer functions. Such transfer functions typically consist of modern sediment samples, collected over a broad environmental gradient. Correlations between the biological communities and environmental parameters observed over these broad gradients are assumed to be equally valid temporally. The predictive ability of such spatially based transfer functions has traditionally been assessed by comparisons of measured and inferred temperatures within the calibration sets, with little validation against historical data. Although statistical techniques such as bootstrapping may improve error estimation, this approach remains partly a circular argument. This raises the question of how reliable such reconstructions are for inferring past changes in temperature? In order to address this question, we used transfer functions to reconstruct July temperatures from diatoms and chironomids from several locations across northern Europe. The transfer functions used showed good internal calibration statistics (r2 = 0.66 - 0.91). The diatom and chironomid inferred July air temperatures were compared to local observational records. As the sediment records were non-annual, all data were first smoothed using a 15 yr moving average filter. None of the five biologically-inferred temperature records were correlated with the local meteorological records. Furthermore, diatom inferred temperatures did not agree with chironomid inferred temperatures from the same cores from the same sites. In an attempt to understand this poor performance the biological proxy data was compressed using principal component analysis (PCA), and the PCA axes compared to the local meteorological data. These analyses clearly demonstrated that July temperatures were not correlated with the biological data at these locations. Some correlations were observed between the biological proxies and autumn and spring temperatures, although this varied slightly between sites and proxies. For example, chironomid data from Iceland was most strongly correlated with temperatures in February, March and April whilst in northern Sweden, the chironomid data was most strongly correlated with temperatures in March, April and May. It is suggested that the biological data at these sites may be responding to changes in the length of the ice-free period or hydrological regimes (including snow melt), rather than temperature per se. Our findings demonstrate the need to validate inferred temperatures against local meteorological data. Where such validation cannot be undertaken, inferred temperature reconstructions should be treated cautiously.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=20040088245&hterms=Gradient&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D90%26Ntt%3DGradient','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=20040088245&hterms=Gradient&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D90%26Ntt%3DGradient"><span>Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Koizumi, Yoshikazu; Kelly, John J.; Nakagawa, Tatsunori; Urakawa, Hidetoshi; El-Fantroussi, Said; Al-Muzaini, Saleh; Fukui, Manabu; Urushigawa, Yoshikuni; Stahl, David A.</p> <p>2002-01-01</p> <p>A mesophilic toluene-degrading consortium (TDC) and an ethylbenzene-degrading consortium (EDC) were established under sulfate-reducing conditions. These consortia were first characterized by denaturing gradient gel electrophoresis (DGGE) fingerprinting of PCR-amplified 16S rRNA gene fragments, followed by sequencing. The sequences of the major bands (T-1 and E-2) belonging to TDC and EDC, respectively, were affiliated with the family Desulfobacteriaceae. Another major band from EDC (E-1) was related to an uncultured non-sulfate-reducing soil bacterium. Oligonucleotide probes specific for the 16S rRNAs of target organisms corresponding to T-1, E-1, and E-2 were designed, and hybridization conditions were optimized for two analytical formats, membrane and DNA microarray hybridization. Both formats were used to characterize the TDC and EDC, and the results of both were consistent with DGGE analysis. In order to assess the utility of the microarray format for analysis of environmental samples, oil-contaminated sediments from the coast of Kuwait were analyzed. The DNA microarray successfully detected bacterial nucleic acids from these samples, but probes targeting specific groups of sulfate-reducing bacteria did not give positive signals. The results of this study demonstrate the limitations and the potential utility of DNA microarrays for microbial community analysis.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li class="active"><span>23</span></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_23 --> <div id="page_24" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li class="active"><span>24</span></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="461"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=126768','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=126768"><span>Parallel Characterization of Anaerobic Toluene- and Ethylbenzene-Degrading Microbial Consortia by PCR-Denaturing Gradient Gel Electrophoresis, RNA-DNA Membrane Hybridization, and DNA Microarray Technology</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Koizumi, Yoshikazu; Kelly, John J.; Nakagawa, Tatsunori; Urakawa, Hidetoshi; El-Fantroussi, Saïd; Al-Muzaini, Saleh; Fukui, Manabu; Urushigawa, Yoshikuni; Stahl, David A.</p> <p>2002-01-01</p> <p>A mesophilic toluene-degrading consortium (TDC) and an ethylbenzene-degrading consortium (EDC) were established under sulfate-reducing conditions. These consortia were first characterized by denaturing gradient gel electrophoresis (DGGE) fingerprinting of PCR-amplified 16S rRNA gene fragments, followed by sequencing. The sequences of the major bands (T-1 and E-2) belonging to TDC and EDC, respectively, were affiliated with the family Desulfobacteriaceae. Another major band from EDC (E-1) was related to an uncultured non-sulfate-reducing soil bacterium. Oligonucleotide probes specific for the 16S rRNAs of target organisms corresponding to T-1, E-1, and E-2 were designed, and hybridization conditions were optimized for two analytical formats, membrane and DNA microarray hybridization. Both formats were used to characterize the TDC and EDC, and the results of both were consistent with DGGE analysis. In order to assess the utility of the microarray format for analysis of environmental samples, oil-contaminated sediments from the coast of Kuwait were analyzed. The DNA microarray successfully detected bacterial nucleic acids from these samples, but probes targeting specific groups of sulfate-reducing bacteria did not give positive signals. The results of this study demonstrate the limitations and the potential utility of DNA microarrays for microbial community analysis. PMID:12088997</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29255454','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29255454"><span>Bacterial Diversity and Biogeochemistry of Two Marine Shallow-Water Hydrothermal Systems off Dominica (Lesser Antilles).</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Pop Ristova, Petra; Pichler, Thomas; Friedrich, Michael W; Bühring, Solveig I</p> <p>2017-01-01</p> <p>Shallow-water hydrothermal systems represent extreme environments with unique biogeochemistry and high biological productivity, at which autotrophic microorganisms use both light and chemical energy for the production of biomass. Microbial communities of these ecosystems are metabolically diverse and possess the capacity to transform a large range of chemical compounds. Yet, little is known about their diversity or factors shaping their structure or how they compare to coastal sediments not impacted by hydrothermalism. To this end, we have used automated ribosomal intergenic spacer analysis (ARISA) and high-throughput Illumina sequencing combined with porewater geochemical analysis to investigate microbial communities along geochemical gradients in two shallow-water hydrothermal systems off the island of Dominica (Lesser Antilles). At both sites, venting of hydrothermal fluids substantially altered the porewater geochemistry by enriching it with silica, iron and dissolved inorganic carbon, resulting in island-like habitats with distinct biogeochemistry. The magnitude of fluid flow and difference in sediment grain size, which impedes mixing of the fluids with seawater, were correlated with the observed differences in the porewater geochemistry between the two sites. Concomitantly, individual sites harbored microbial communities with a significantly different community structure. These differences could be statistically linked to variations in the porewater geochemistry and the hydrothermal fluids. The two shallow-water hydrothermal systems of Dominica harbored bacterial communities with high taxonomical and metabolic diversity, predominated by heterotrophic microorganisms associated with the Gammaproteobacterial genera Pseudomonas and Pseudoalteromonas , indicating the importance of heterotrophic processes. Overall, this study shows that shallow-water hydrothermal systems contribute substantially to the biogeochemical heterogeneity and bacterial diversity of coastal sediments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5722836','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5722836"><span>Bacterial Diversity and Biogeochemistry of Two Marine Shallow-Water Hydrothermal Systems off Dominica (Lesser Antilles)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Pop Ristova, Petra; Pichler, Thomas; Friedrich, Michael W.; Bühring, Solveig I.</p> <p>2017-01-01</p> <p>Shallow-water hydrothermal systems represent extreme environments with unique biogeochemistry and high biological productivity, at which autotrophic microorganisms use both light and chemical energy for the production of biomass. Microbial communities of these ecosystems are metabolically diverse and possess the capacity to transform a large range of chemical compounds. Yet, little is known about their diversity or factors shaping their structure or how they compare to coastal sediments not impacted by hydrothermalism. To this end, we have used automated ribosomal intergenic spacer analysis (ARISA) and high-throughput Illumina sequencing combined with porewater geochemical analysis to investigate microbial communities along geochemical gradients in two shallow-water hydrothermal systems off the island of Dominica (Lesser Antilles). At both sites, venting of hydrothermal fluids substantially altered the porewater geochemistry by enriching it with silica, iron and dissolved inorganic carbon, resulting in island-like habitats with distinct biogeochemistry. The magnitude of fluid flow and difference in sediment grain size, which impedes mixing of the fluids with seawater, were correlated with the observed differences in the porewater geochemistry between the two sites. Concomitantly, individual sites harbored microbial communities with a significantly different community structure. These differences could be statistically linked to variations in the porewater geochemistry and the hydrothermal fluids. The two shallow-water hydrothermal systems of Dominica harbored bacterial communities with high taxonomical and metabolic diversity, predominated by heterotrophic microorganisms associated with the Gammaproteobacterial genera Pseudomonas and Pseudoalteromonas, indicating the importance of heterotrophic processes. Overall, this study shows that shallow-water hydrothermal systems contribute substantially to the biogeochemical heterogeneity and bacterial diversity of coastal sediments. PMID:29255454</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2002EGSGA..27...23L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2002EGSGA..27...23L"><span>Suspended Sediment Load and Sediment Yield During Floods and Snowmelt Runoff In The Rio Cordon (northeastern Italy)</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lenzi, M. A.</p> <p></p> <p>Suspended sediment transport in high mountain streams display a grater time-space variability and a shorter duration (normally concentrated during the snowmelt period and the duration time of single floods) than in larger lowland rivers. Suspended sedi- ment load and sediment yield were analysed in a small, high-gradient stream of East- ern Italian Alps which was instrumented to measure in continuous water discharge and sediment transport. The research was conducted in the Rio Cordon, a 5 Km2 small catchment of the Dolomites. The ratio of suspended to total sediment yield and the re- lations between sediment concentration and water discharge were analysed for eleven floods which occurred from 1991 to 2001. Different patterns of hysteresis in the re- lation between suspended sediment and discharge were related to types and locations of active sediment sources. The within-storm variation of particle size of suspended sediment during a mayor flood (September 1994, 30 years<Tr<50 years) indicates a coarsening of transported material for increasing discharge. An analysis of grain size has shown that erosion areas on hill-slopes were the main source of suspended load. The relation between water discharge and S.S.C. for both floods and snowmelt runoff shows larger scatter for both series of data, with snowmelt data less scattered than rain- fall induced floods. This is accounted for by the variable effectiveness of erosion pro- cesses and sediment supply mechanisms during snowmelt and rainfall-induced floods. During snowmelt, erosion processes essentially consist in the removal of loose, fine- grained sediment from slopes by surface runoff; as a consequence, suspended sedi- ment transport takes place also with rather low discharges. Abundant suspended sedi- ment transport was recorded during the snowmelt period of May 2001, that followed a winter characterized by a huge snow cover and late snowfalls. Different sources of sed- iment contribute to suspended load during the May11, 2001, snowmelt induced-small- flood. Therefore, the most important erosion processes was a landslide that originates a debris-mud-flow, occur only as a consequence of infiltration-saturation processes and hypodermic runoff (without associated rainfall and/or snow fall). This situation caused the instability of a large part of a sub-catchment hill-slope, the movement and the transport of a big quantity of fine-medium sediment (4176 m3) as mud flow, part of which deposited on the fan tributary (4100 m3) and afterwards reached the main 1 collector and subsequent the instrumented station (400 m3). Total sediment yield of this snowmelt flood measured at the Rio Cordon station is three orders of magnitude greater than previous one. The main processes by which sediments are transferred from hillslope to the channel outlet is also shown. 2</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUFMEP33A0972R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUFMEP33A0972R"><span>Short Term Sediment Exchange Between Marshes and Bays Using Beryllium-7 as a Tracer, Fourleague Bay, Louisiana.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Restreppo, G. A.; Bentley, S. J.; Xu, K.; Wang, J.</p> <p>2016-12-01</p> <p>Modern delta models focus on the availability and exchange of coarse sediment as one of the major factors of deltaic growth or decay. Fine-grained sediment exchange within a river's delta is relatively poorly understood, as is the impact that this exchange has on land building and land loss. To better understand the dynamics of fine grain sediment exchange between river mouth, adjacent bays, and marshland, sediment cores from Fourleague Bay, LA, were collected and analyzed for 7Be, a naturally occurring radioisotope that serves as a marker for recently deposited sediment. Time-series push cores were collected every two months at ten sites, five located across a longitudinal transect in the middle bay and five located along adjacent marshes, from May 2015 to May 2016. All sites fall within 11 to 28 km of the Atchafalaya Delta, along a gradient extending towards the open ocean. Cores were extruded in 2 cm intervals, dried, ground, and analyzed via gamma spectrometry for the presence of 7Be. Inventories of 7Be were then calculated and used to determine bimonthly sedimentation rates over the course twelve months. Sediment deposition on the bay floor and marsh surface were then compared to Atchafalaya River discharge, wind speed and direction, and wave action. Preliminary results indicate patterns of initial fluvial sediment transfer from river to bay floor, then bay floor to marsh surface, with decreasing fluvial influence towards the open ocean. Sediment transport from bay to marsh appears to be coupled with meteorological forcing that induces bay-floor sediment resuspension and the flooding of marsh surfaces. This indirect mechanism of fluvial sediment supply to wetland surfaces may extend the region of influence for sediment delivery from man-made river-sediment diversions.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016CSR...129....1S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016CSR...129....1S"><span>Sediment dynamics and their potential influence on insular-slope mesophotic coral ecosystems</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sherman, C.; Schmidt, W.; Appeldoorn, R.; Hutchinson, Y.; Ruiz, H.; Nemeth, M.; Bejarano, I.; Motta, J. J. Cruz; Xu, H.</p> <p>2016-10-01</p> <p>Although sediment dynamics exert a fundamental control on the character and distribution of reefs, data on sediment dynamics in mesophotic systems are scarce. In this study, sediment traps and benthic photo-transects were used to document spatial and temporal patterns of suspended-sediment and bed-load dynamics at two geomorphically distinct mesophotic coral ecosystems (MCEs) on the upper insular slope of southwest Puerto Rico. Trap accumulation rates of suspended sediment were relatively low and spatiotemporally uniform, averaging <1 mg cm-2 d-1 and never exceeding 3 mg cm-2 d-1 over the sampled period. In contrast, trap accumulation rates of downslope bed-load movement were orders of magnitude higher than suspended-sediment accumulation rates and highly variable, by orders of magnitude, both spatially and temporally. Percent sand cover within photo-transects varied over time from 10% to more than 40% providing further evidence of downslope sediment movement. In general, the more exposed, lower gradient site had higher rates of downslope sediment movement, higher sand cover and lower coral cover than the more sheltered and steep site that exhibited lower rates of downslope sediment movement, lower sand cover and higher coral cover. In most cases, trap accumulation rates of suspended sediment and bed load varied together and peaks in trap accumulation rates correspond to peaks in SWAN-modeled wave-orbital velocities, suggesting that surface waves may influence sediment dynamics even in mesophotic settings. Though variable, off-shelf transport of sediment is a continuous process occurring even during non-storm conditions. Continuous downslope sediment movement in conjunction with degree of exposure to prevailing seas and slope geomorphology are proposed to exert an important influence on the character and distribution of insular-slope MCEs.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFMEP13F..05N','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFMEP13F..05N"><span>10Be constrains the sediment sources and sediment yields to the Great Barrier Reef from the tropical Barron River catchment, Queensland, Australia</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Nichols, K. K.; Bierman, P. R.; Rood, D. H.</p> <p>2014-12-01</p> <p>Estimates of long-term, background sediment generation rates place current and future sediment fluxes to the Great Barrier Reef in context. Without reliable estimates of sediment generation rates and without identification of the sources of sediment delivered to the reef prior to European settlement (c. 1850), determining the necessity and effectiveness of contemporary landscape management efforts is difficult. Using the ~2100-km2 Barron River catchment in Queensland, Australia, as a test case, we use in situ-produced 10Be to derive sediment generation rate estimates and use in situ and meteoric 10Be to identify the source of that sediment, which enters the Coral Sea near Cairns. Previous model-based calculations suggested that background sediment yields were up to an order of magnitude lower than contemporary sediment yields. In contrast, in situ 10Be data indicate that background (43 t km-2 y-1) and contemporary sediment yields (~45 t km-2 y-1) for the Barron River are similar. These data suggest that the reef became established in a sediment flux similar to what it receives today. Since western agricultural practices increased erosion rates, large amounts of sediment mobilized from hillslopes during the last century are probably stored in Queensland catchments and will eventually be transported to the coast, most likely in flows triggered by rare but powerful tropical cyclones that were more common before European settlement and may increase in strength as climate change warms the south Pacific Ocean. In situ and meteoric 10Be concentrations of Coral Sea beach sand near Cairns are similar to those in rivers on the Atherton Tablelands, suggesting that most sediment is derived from the extensive, low-gradient uplands rather than the steep, more rapidly eroding but beach proximal escarpment.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://www.cerc.usgs.gov/pubs/center/pdfDocs/BSR2001-0009.pdf','USGSPUBS'); return false;" href="http://www.cerc.usgs.gov/pubs/center/pdfDocs/BSR2001-0009.pdf"><span>A National Pilot Study of Mercury Contamination of Aquatic Ecosystems Along Multiple Gradients: Bioaccumulation in Fish</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Brumbaugh, William G.; Krabbenhoft, David P.; Helsel, Dennis R.; Wiener, James G.; Echols, Kathy R.</p> <p>2001-01-01</p> <p>Water, sediment, and fish were sampled in the summer and fall of 1998 at 106 sites from 20 U.S. watershed basins to examine relations of mercury (Hg) and methylmercury (MeHg) in aquatic ecosystems. Bioaccumulation of Hg in fish from these basins was evaluated in relation to species, Hg and MeHg in surficial sediment and water, and watershed characteristics. Bioaccumulation was strongly (positively) correlated with MeHg in water (r = 0.63, p < 0.001) but only moderately with the MeHg in sediment (r = 0.33, p < 0.001) or total Hg in water (r = 0.28, p < 0.01). Of the other significantly measured parameters, pH, DOC, sulfate, sediment LOI, and the percent wetlands of each basin were also significantly correlated with Hg bioaccumulation in fish. The best model for predicting Hg bioaccumulation included Me Hg in water, PH of the water, % wetlands in the basin, and the AVS content of the sediment. These four variables accounted for 45% of the variability of the fish fillet Hg concentration normalized (divided) by total length; however, the majority was described by MeHg in water. A MeHg water concentration 0.12 ng/L was on average, associated with a fish fillet Hg concentration of 0.3 mg/kg wet weight for an age-3 fish when all species were considered. For age-3 largemouth bass, a MeHg water concentration of 0.058 ng/L was associated with the 0.3 mg/kg fillet concentration. Based on rankings for Hg in sediment, water, and fish, sampling sites from the following five study basins had the greatest Hg contamination: Nevada Basin and Range, South Florida Basin, Sacramento River Basin (California), Santee River Basin and Caostal Drainages (South Carolina), and the Long Island and New Jersey Coastal DRainags. A sampling and analysis strategy based on this pilot study is planned for all USGS/NAWQA study units over the next decade.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=137675&keyword=photosynthesis&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=137675&keyword=photosynthesis&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>A MODEL FOR THE DISTRIBUTION OF BACTERIA IN THE SEAGRASS RHIZOSPHERE REDOX GRADIENT</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Abstract and Oral presentation for the meeting of Wetland and Estuary Scientists from the US Gulf Coast and S.E. Atlantic.<br><br>A conceptual model of seagrass bed sediments accounts for observations on the distribution and activities of bacteria associated with seagrass roots i...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=266375&Lab=NHEERL&keyword=taylor+t+b&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=266375&Lab=NHEERL&keyword=taylor+t+b&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Predicting geomorphic stability in low-order streams of the western Lake Superior basin - Poster</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Width:depth ratios, entrenchment ratios, gradients, and median substrate particle sizes (D50s) were measured in 32 second- and third-order stream reaches in the western Lake Superior basin in 1997-1998. More than 700 measurements of suspended sediment concentration during snowmel...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/42128','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/42128"><span>Fire history in a southern Appalachian deciduous forest</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Norman L., Jr. Christensen; Kurt Fesenmeyer</p> <p>2012-01-01</p> <p>Because there are few long-term dendrochronological and lake sediment data for the southern Appalachians, little is known regarding the history of fire in this region's forests through the Holocene. Radio-carbon ages for 82 soil charcoal samples collected from local depositional sites along a topographic gradient from mixed hardwood (Liriodendron...</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27158721','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27158721"><span>Megafauna moves nutrients uphill.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Gross, Michael</p> <p>2016-01-11</p> <p>Large animals have a disproportionate capacity to transport nutrients along gradients and against water flow directions, making them more available to ecosystems and ultimately saving them from disappearing in sea floor sediments. Megafauna extinctions have reduced this capacity dramatically, while humans and their livestock aren’t stepping in to restore this important ecosystem service.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://eric.ed.gov/?q=Gradient+AND+physics&pg=3&id=EJ300433','ERIC'); return false;" href="https://eric.ed.gov/?q=Gradient+AND+physics&pg=3&id=EJ300433"><span>How Roots Perceive and Respond to Gravity.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Moore, Randy</p> <p>1984-01-01</p> <p>Discusses graviperception and gravitropism by plant roots. Indicates that graviperception occurs via sedimentation of amyloplasts in columella cells of the root cap and that the minimal graviresponsiveness of lateral roots may be due to the intensity of their caps to establish a concentration gradient of inhibitor(s) sufficient to affect…</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/2515536','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/2515536"><span>Immune complexes in serum of rats during infection with Plasmodium berghei.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Alder, J D; Kreier, J P</p> <p>1989-01-01</p> <p>Large amounts of immune complexes were present in the serum of infected rats early in infection when parasitemias were low. As the infection progressed and parasitemia increased and then decreased, the amounts of immune complexes in the serum also fell. This result suggests that increased efficiency of complex clearance was an important factor in determining the levels of immune complexes in the serum. In high performance liquid chromatography (HPLC), the complexes in the serum migrated as a peak with material of 350 kDa and greater in mass. They sedimented in a sucrose gradient as a band with a sedimentation coefficient of 22 s, which was calculated to yield a mass of approximately 1100 kDa. Immunoelectrophoresis and radial immunodiffusion showed that IgG was the major immunoglobulin in the complexes. As the IgG content of the complexes increased, the levels of complexes in the serum generally decreased. HPLC analysis of precipitated complexes suggested that they contained loosely bound albumin. Serum proteins were affected by the infection. A depletion of free immunoglobulin was observed during the initial period of immune complex formation.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012AGUFM.H43L..01L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012AGUFM.H43L..01L"><span>Using molecular-scale tracers to investigate transport of agricultural pollutants in soil and water</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lloyd, C.; Michaelides, K.; Chadwick, D.; Dungait, J.; Evershed, R. P.</p> <p>2012-12-01</p> <p>We explore the use of molecular-scale tracers to investigate the transport of potential pollutants due to the application of slurry to soil. The molecular-scale approach allows us to separate the pollutants which are moved to water bodies through sediment-bound and dissolved transport pathways. Slurry is applied to agricultural land to as a soil-improver across a wide-range of topographic and climatic regimes, hence a set of experiments were designed to assess the effect of changing slope gradient and rainfall intensity on the transport of pollutants. The experiments were carried out using University of Bristol's TRACE (Test Rig for Advancing Connectivity Experiments) facility. The facility includes a dual axis soil slope (6 x 2.5 x 0.3 m3) and 6-nozzle rainfall simulator, which enables the manipulation of the slope to simulate different slope gradient and rainfall scenarios. Cattle slurry was applied to the top 1 metre strip of the experimental soil slope followed by four rainfall simulations, where the gradient (5° & 10°) and the rainfall intensity (60 & 120 mm hr-1) were co-varied. Leachate was sampled from different flow pathways (surface, subsurface and percolated) via multiple outlets on the slope throughout the experiments and soil cores were taken from the slope after each experiment. Novel tracers were used to trace the pollutants in both dissolved and sediment-bound forms. Fluorescence spectroscopy was used to trace dissolved slurry-derived material via water flow pathways, as the slurry was found to have a distinct signature compared with the soil. The fluorescence signatures of the leachates were compared with those of many organic compounds in order to characterise the origin of the signal. This allowed the assessment of the longevity of the signal in the environment to establish if it could be used as a robust long-term tracer of slurry material in water or if would be subject to transform processes through time. 5-βstanols, organic compounds unique to ruminant faeces, were used to trace the transport of sediment-bound pollutants from the slurry which could be transported into water bodies via erosion processes. The results showed that contributions of potential pollutants from the surface and subsurface flow pathways and from the eroded sediment differ according to slope gradient and rainfall intensity. Therefore, as the contribution of each of these pathways changes in response to rainfall and slope gradient, the pollution risk also changes accordingly, as different organic compounds are mobilised at varying rates. Rapid hydrological response to rainfall results in erosion and surface transport of sediment-bound and dissolved pollutants, creating an immediate contamination threat. However, conditions resulting in a slower hydrological response and the predominance of flow percolation over surface runoff results in higher rates of dissolved pollutant transport through the soil layers which risks contamination of subsurface and deeper ground-water systems. These experiments provide insight into the pathways and timing of contaminant transport with potential implications for understanding contamination risk from the transfer of slurry from land to water bodies. Understanding this threat is critical at a time when pressure is on to develop land-management strategies to reduce pollution alongside maintaining food security.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2006AGUSM.B34A..07H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2006AGUSM.B34A..07H"><span>Alteration in Solid State Phosphorous With Depth in Sediments Along the Salinity Transition Zone of a Major Chesapeake Bay Tributary</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hartzell, J. L.; Jordan, T. E.</p> <p>2006-05-01</p> <p>Determining the fate of particulate phosphorus in estuaries is essential for addressing the widespread problem of estuarine eutrophication, and is key to understanding P cycling and developing accurate global P budgets. Prominent reservoirs of P in surficial sediments include particulate P associated with iron or organic C. However, the importance of these reservoirs changes with the decomposition of organic matter and the reduction of iron. Also, the importance of iron bound P may decrease with increasing salinity due to the formation of iron sulfides. To investigate estuarine P burial and its relationship to salinity, we collected sediment cores of one-meter depth along the salinity gradient of the Patuxent River estuary (Maryland, USA), a major tributary of Chesapeake Bay. The sediments were analyzed using a sequential sedimentary extraction procedure that quantifies five separate reservoirs of particulate P. Total phosphorus concentrations in freshwater sediments were significantly higher than those in more saline sediments at all depths. Conversely, porewater phosphate concentrations were significantly lower in freshwater sediments than in the more saline sediments. Total P in the saline sediment cores decreased with depth, correlating to a reduction in iron-bound P. However, we did not find a concurrent increase in authigenic apatite with depth. Our findings indicate that mechanisms controlling changes in P sorption to sediments change profoundly with salinity and may contribute to increased bioavailability of phosphates with increasing salinity.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1995GeCoA..59..231G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1995GeCoA..59..231G"><span>Diffusivity in surficial sediments and benthic mats determined by use of a combined N 2O-O 2 microsensor</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Glud, Ronnie Nøhr; Jensen, Kim; Revsbech, Niels Peter</p> <p>1995-01-01</p> <p>Diffusional characteristics of two biologically active surface sediments were determined by use of a combined N 2O-O 2 microsensor. By analyzing changes in the N2O-gradients in these sediments, it was possible to determine the product ( φDs) for this species with submillimetre depth resolution, where φ is the porosity and Ds the substrate diffusion coefficient. The ( φDs)-value for O 2 could be calculated then from ( φDs)-value for N 2O, because the diffusivity of the two molecules were modified in the same way within the sediment. Both sediments exhibited fine-scale horizontal and vertical variability in diffusion characteristics, and this must be accounted for when analyzing microprofile data. The average ( φDs)-value for N 2O at 20°C for an estuarine surface sediment was 0.93 × 10 -5 cm2 s -1 (at 0-4 mm depth), while the value for the upper 2 mm of a stream sediment covered by a microbial mat was 1.42 × 10 -5 cm 2 s -1. Biological inactivation and oxidation by exposure to an O 2 atmosphere had no effect on the measured ( φDs) for the estuarine sediment; however, the value for the sediment covered by a microbial mat, with dense populations of meiofauna, decreased by 20%. The method presented is ideal for measurements of diffusivity at a high spatial resolution in surficial sediments and densely packed microbial communities.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=20040089641&hterms=stem+cell&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D60%26Ntt%3Dstem%2Bcell','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=20040089641&hterms=stem+cell&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D60%26Ntt%3Dstem%2Bcell"><span>The structure of the stem endodermis in etiolated pea seedlings</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Sack, F. D.</p> <p>1987-01-01</p> <p>Differentiation of the endodermis was examined in third internodes of etiolated Pisum sativum L. cv. Alaska seedlings. The endodermis in young internodes contains large, sedimented amyloplasts; in older internodes, a casparian strip differentiates and the endodermis becomes depleted of starch except for the proximal region of the stem, which retains sedimented amyloplasts and remains graviresponsive. Sedimentation occurs in the hook but does not occur consistently until cells reach the base of the hook, where the axis becomes vertical, rapid cell elongation starts, and amyloplast diameter increases substantially. Contact between endoplasmic reticulum and amyloplasts was observed. Endoplasmic reticulum is not distributed polarly with respect to gravity. No symplastic or apoplastic blockages exist in the endodermis at the level of the stem where lateral gradients may be established during tropic curvature.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://hdl.handle.net/2060/19940014761','NASA-TRS'); return false;" href="http://hdl.handle.net/2060/19940014761"><span>The carbon isotope biogeochemistry of methane production in anoxic sediments. 1: Field observations</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Blair, Neal E.; Boehme, Susan E.; Carter, W. Dale, Jr.</p> <p>1993-01-01</p> <p>The natural abundance C-13/C-12 ratio of methane from anoxic marine and freshwater sediments in temperate climates varies seasonally. Carbon isotopic measurements of the methanogenic precursors, acetate and dissolved inorganic carbon, from the marine sediments of Cape Lookout Bight, North Carolina were used to determine the sources of the seasonal variations at that site. Movement of the methanogenic zone over an isotopic gradient within the dissolved CO2 pool appears to be the dominant control of the methane C-13/C-12 ratio from February to June. The onset of acetoclastic methane-production is a second important controlling process during mid-summer. An apparent temperature dependence on the fractionation factor for CO2-reduction may have a significant influence on the isotopic composition of methane throughout the year.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=19880023595&hterms=Endocrinology&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D90%26Ntt%3DEndocrinology','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=19880023595&hterms=Endocrinology&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D90%26Ntt%3DEndocrinology"><span>Separation of cells from the rat anterior pituitary gland</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Hymer, W. C.; Hatfield, J. Michael</p> <p>1984-01-01</p> <p>Data concerned with analyzing the cellular organization of the rat anterior pituitary gland are examined. The preparation of the cell suspensions and the methods used to separate pituitary cell types are described. Particular emphasis is given to velocity sedimentation at unit gravity, density gradient centrifugation, affinity methods, fluorescence activated cell sorting, and density gradient and continuous-flow electrophoresis. The difficulties encountered when attempting to compare data from different pituitary cell separation studies are discussed, and results from various experiments are presented. The functional capabilities of the separated cell populations can be tested in various culture systems.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li class="active"><span>24</span></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_24 --> <div id="page_25" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li class="active"><span>25</span></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="481"> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=19920069764&hterms=swimming&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D50%26Ntt%3Dswimming','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=19920069764&hterms=swimming&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D50%26Ntt%3Dswimming"><span>Gravity dependent processes and intracellular motion</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Todd, Paul</p> <p>1991-01-01</p> <p>Most organelles large enough to sediment or to undergo isothermal settling within eukaryotic cells are held in position by one or more components of the cytoskeleton. The interior of eukaryotic cells is considered to be very crowded, and the evaluation of natural-convective processes is very difficult. In a most simple view, the cell may be considered as consisting of four immiscible phases among which solutes are exchanged causing steep concentration gradients and thermodynamic conditions far from equilibrium. Extracellular gravity-related forces may include natural convection due to solute gradients external to single cells or the work performed by swimming, ciliated, or elongating cells.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFMEP41C1851W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFMEP41C1851W"><span>A Layered Past: the Transformation and Development of Legacy Sediments as Alluvial Soils</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wade, A.; Richter, D. D., Jr.</p> <p>2017-12-01</p> <p>Legacy sediments are a widespread consequence of post-colonial upland erosion in the United States. Although these deposits are ubiquitous in valley bottoms of the southeastern Piedmont, mature hardwood forests and collapsed stream banks mask their occurrence. While these deposits have been studied for their fluvial dynamics and water quality impacts, they have received less attention in regards to soil structure and formation. In this study, we characterized legacy sediment mineraology, composition and structure to understand how pedogenic processes are overprinting sediment layering in a 40-hectare Piedmont floodplain. To constrain the timing of deposition, we used Pb-210 and C-14 dating on buried charcoal and tree stumps. Our results show that in 100 years of forest regeneration, vegetation and oscillating floodplain conditions have driven these eroded sediment deposits to evolve as soil profiles both in structure and composition. These textural and nutrient gradients have ramifications for the subsurface flow of nutrients through the floodplain. Given the estimated millennia it will take to erode legacy sediment from Piedmont floodplains, it is important to think of these deposits as new stable environments on their own trajectory of soil evolution.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=356709','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=356709"><span>Nucleoprotein Complexes Containing Replicating Simian Virus 40 DNA: Comparison with Polyoma Nucleoprotein Complexes</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Hall, Mark R.; Meinke, William; Goldstein, David A.</p> <p>1973-01-01</p> <p>Procedures for isolating nucleoprotein complexes containing replicating polyoma DNA from infected mouse cells were used to prepare short-lived nucleoprotein complexes (r-SV40 complexes) containing replicating simian virus 40 (SV40) DNA from infected monkey cells. Like the polyoma complexes, r-SV40 complexes were only partially released from nuclei by cell lysis but could be extracted from nuclei by prolonged treatment with solutions containing Triton X-100. r-SV40 complexes sedimented faster than complexes containing SV40 supercoiled DNA (SV40 complex) in sucrose gradients, and both types of SV40 nucleoprotein complexes sedimented ahead of polyoma complexes containing supercoiled polyoma DNA (py complex). The sedimentation rates of py complex and SV40 complex were 56 and 61S, respectively, based on the sedimentation rate of the mouse large ribosomal subunit as a marker. r-SV40 complexes sedimented as multiple peaks between 56 and 75S. Sedimentation and buoyant density measurements indicated that protein is bound to all forms of SV40 DNA at about the same ratio of protein to DNA (1-2/1) as was reported for polyoma nucleoproteins. PMID:4359958</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70185134','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70185134"><span>Mobilization of natural colloids from an iron oxide-coated sand aquifer--Effect of pH and ionic strength</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Bunn, Rebecca A.; Magelky, Robin D.; Ryan, Joseph N.; Elimelech, Menachem</p> <p>2002-01-01</p> <p>Field and laboratory column experiments were performed to assess the effect of elevated pH and reduced ionic strength on the mobilization of natural colloids in a ferric oxyhydroxide-coated aquifer sediment. The field experiments were conducted as natural gradient injections of groundwater amended by sodium hydroxide additions. The laboratory experiments were conducted in columns of undisturbed, oriented sediments and disturbed, disoriented sediments. In the field, the breakthrough of released colloids coincided with the pH pulse breakthrough and lagged the bromide tracer breakthrough. The breakthrough behavior suggested that the progress of the elevated pH front controlled the transport of the mobilized colloids. In the laboratory, about twice as much colloid release occurred in the disturbed sediments as in the undisturbed sediments. The field and laboratory experiments both showed that the total mass of colloid release increased with increasing pH until the concurrent increase in ionic strength limited release. A decrease in ionic strength did not mobilize significant amounts of colloids in the field. The amount of colloids released normalized to the mass of the sediments was similar for the field and the undisturbed laboratory experiments.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1988SedG...55..283P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1988SedG...55..283P"><span>Deltaic sedimentation and stratigraphic sequences in post-orogenic basins, Western Greece</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Piper, David J. W.; Kontopoulos, N.; Panagos, A. G.</p> <p>1988-03-01</p> <p>Post-orogenic basin sediments in the gulfs of Corinth, Patras and Amvrakia, on the western coast of Greece, occur in four tectonic settings: (1) true graben; (2) simple and complex half graben; (3) shallow half graben associated with the high-angel surface traces of thrust faults; and (4) marginal depressions adjacent to graben in which sediment loading has occurred. Late Quaternary facies distribution has been mapped in all three basins. Sea level changes, interacting with the apparently fortuitous elevation of horsts at basin margins, result in a complex alternation of well-mixed marine, stratified marine, brackish and lacustrine facies. Organic carbon contents of muds are high in all but the well-mixed marine facies. Basin margin slope is the most important determinant of facies distribution. The steep slopes of the Gulf of Corinth half graben result in fan-deltas which deliver coarse sediments in turbidity currents to the deep basin floor. Where gradients are reduced by marginal downwarping (Gulf of Patras) or on the gentle slopes of thrust-related half graben (Gulf of Amvrakia) coarse sediments are trapped on the subaerial delta or the coastal zone, and the fine sediment reaching the basin floor appears derived mainly from muddy plumes during winter floods.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?direntryid=335610&keyword=ecosystems&subject=ecosystems%20research&showcriteria=2&datebeginpublishedpresented=04/21/2012&dateendpublishedpresented=04/21/2017&sortby=pubdateyear&','PESTICIDES'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?direntryid=335610&keyword=ecosystems&subject=ecosystems%20research&showcriteria=2&datebeginpublishedpresented=04/21/2012&dateendpublishedpresented=04/21/2017&sortby=pubdateyear&"><span>Linking Terrigenous Sediment Delivery to Declines in Coral ...</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.epa.gov/pesticides/search.htm">EPA Pesticide Factsheets</a></p> <p></p> <p></p> <p>Worldwide coral reef conditions continue to decline despite the valuable socioeconomic benefits of these ecosystems. There is growing recognition that quantifying reefs in terms reflecting what stakeholders value is vital for comparing inherent tradeoffs among coastal management decisions. Terrestrial sediment runoff ranks high as a stressor to coral reefs and is a key concern in Puerto Rico where reefs are among the most threatened in the Caribbean. This research aimed to identify the degree to which sediment runoff impacts production of coral reef ecosystem services and the potential for watershed management actions to improve these services. Ecosystem service production functions were applied to map and translate metrics of ecological reef condition into ecosystem service production under a gradient of increasing sediment delivery. We found that higher sediment delivery decreased provisioning of most ecosystem services, including ecosystem integrity, bioprospecting discovery, and reef-based recreational opportunities and fisheries production. However, shoreline protection and services with a strong contribution from non-reef habitats (e.g., mangroves, seagrasses) were higher in locations with high sediment delivery, although there was a strong inshore effect suggesting the influence of distance to shore, depth, and inshore habitats. Differences among services may indicate potential tradeoffs and the need to consider habitat connectivity, nursery habitat, acce</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009AGUFMEP42A..04F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009AGUFMEP42A..04F"><span>IMPLICATIONS OF NON-LOCALITY OF TRANSPORT IN GEOMORPHIC TRANSPORT LAWS: HILLSLOPES AND LANDSCAPE EVOLUTION MODELING</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Foufoula-Georgiou, E.; Ganti, V. K.; Dietrich, W. E.</p> <p>2009-12-01</p> <p>Sediment transport on hillslopes can be thought of as a hopping process, where the sediment moves in a series of jumps. A wide range of processes shape the hillslopes which can move sediment to a large distance in the downslope direction, thus, resulting in a broad-tail in the probability density function (PDF) of hopping lengths. Here, we argue that such a broad-tailed distribution calls for a non-local computation of sediment flux, where the sediment flux is not only a function of local topographic quantities but is an integral flux which takes into account the upslope topographic “memory” of the point of interest. We encapsulate this non-local behavior into a simple fractional diffusive model that involves fractional (non-integer) derivatives. We present theoretical predictions from this nonlocal model and demonstrate a nonlinear dependence of sediment flux on local gradient, consistent with observations. Further, we demonstrate that the non-local model naturally eliminates the scale-dependence exhibited by any local (linear or nonlinear) sediment transport model. An extension to a 2-D framework, where the fractional derivative can be cast into a mixture of directional derivatives, is discussed together with the implications of introducing non-locality into existing landscape evolution models.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1054161','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1054161"><span>Release of aged contaminants from weathered sediments: Effects of sorbate speciation on scaling of reactive transport</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Chorover, Jon; Perdrial, Nico; Mueller, Karl</p> <p>2012-11-05</p> <p>Hanford sediments impacted by hyperalkaline high level radioactive waste have undergone incongruent silicate mineral weathering concurrent with contaminant uptake. In this project, we studied the impact of background pore water (BPW) on strontium, cesium and iodine desorption and transport in Hanford sediments that were experimentally weathered by contact with simulated hyperalkaline tank waste leachate (STWL) solutions. Using those lab-weathered Hanford sediments (HS) and model precipitates formed during nucleation from homogeneous STWL solutions (HN), we (i) provided thorough characterization of reaction products over a matrix of field-relevant gradients in contaminant concentration, partial pressure of carbon dioxide, and reaction time; (ii) improvedmore » molecular-scale understanding of how sorbate speciation controls contaminant desorption from weathered sediments upon removal of caustic sources; and (iii) developed a mechanistic, predictive model of meso- to field-scale contaminant reactive transport under these conditions. In this final report, we provide detailed descriptions of our results from this three-year study, completed in 2012 following a one-year no cost extension.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1186029','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1186029"><span>Release of Aged Contaminants from weathered sediments: Effects of sorbate speciation on scaling of reactive transport</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Chorover, Jon; Perdrial, Nico; Mueller, Karl</p> <p>2012-08-14</p> <p>Hanford sediments impacted by hyperalkaline high level radioactive waste have undergone incongruent silicate mineral weathering concurrent with contaminant uptake (Chorover et al., 2008). In this project, we studied the impact of background pore water (BPW) on strontium, cesium and iodine desorption and transport in Hanford sediments that were experimentally weathered by contact with simulated hyperalkaline tank waste leachate (STWL) solutions. Using those lab-weathered Hanford sediments (HS) and model precipitates formed during nucleation from homogeneous STWL solutions (HN), we (i) provided thorough characterization of reaction products over a matrix of field-relevant gradients in contaminant concentration, P CO2, and reaction time; (ii)more » improved molecular-scale understanding of how sorbate speciation controls contaminant desorption from weathered sediments upon removal of caustic sources; and (iii) developed a mechanistic, predictive model of meso- to field-scale contaminant reactive transport under these conditions. Below, we provide some detailed descriptions of our results from this three year study, recently completed following a one-year no cost extension.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28256564','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28256564"><span>Capillary flow-driven microfluidic device with wettability gradient and sedimentation effects for blood plasma separation.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Maria, M Sneha; Rakesh, P E; Chandra, T S; Sen, A K</p> <p>2017-03-03</p> <p>We report a capillary flow-driven microfluidic device for blood-plasma separation that comprises a cylindrical well between a pair of bottom and top channels. Exposure of the well to oxygen-plasma creates wettability gradient on its inner surface with its ends hydrophilic and middle portion hydrophobic. Due to capillary action, sample blood self-infuses into bottom channel and rises up the well. Separation of plasma occurs at the hydrophobic patch due to formation of a 'self-built-in filter' and sedimentation. Capillary velocity is predicted using a model and validated using experimental data. Sedimentation of RBCs is explained using modified Steinour's model and correlation between settling velocity and liquid concentration is found. Variation of contact angle on inner surface of the well is characterized and effects of well diameter and height and dilution ratio on plasma separation rate are investigated. With a well of 1.0 mm diameter and 4.0 mm height, 2.0 μl of plasma was obtained (from <10 μl whole blood) in 15 min with a purification efficiency of 99.9%. Detection of glucose was demonstrated with the plasma obtained. Wetting property of channels was maintained by storing in DI water under vacuum and performance of the device was found to be unaffected over three weeks.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5335260','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5335260"><span>Capillary flow-driven microfluidic device with wettability gradient and sedimentation effects for blood plasma separation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Maria, M. Sneha; Rakesh, P. E.; Chandra, T. S.; Sen, A. K.</p> <p>2017-01-01</p> <p>We report a capillary flow-driven microfluidic device for blood-plasma separation that comprises a cylindrical well between a pair of bottom and top channels. Exposure of the well to oxygen-plasma creates wettability gradient on its inner surface with its ends hydrophilic and middle portion hydrophobic. Due to capillary action, sample blood self-infuses into bottom channel and rises up the well. Separation of plasma occurs at the hydrophobic patch due to formation of a ‘self-built-in filter’ and sedimentation. Capillary velocity is predicted using a model and validated using experimental data. Sedimentation of RBCs is explained using modified Steinour’s model and correlation between settling velocity and liquid concentration is found. Variation of contact angle on inner surface of the well is characterized and effects of well diameter and height and dilution ratio on plasma separation rate are investigated. With a well of 1.0 mm diameter and 4.0 mm height, 2.0 μl of plasma was obtained (from <10 μl whole blood) in 15 min with a purification efficiency of 99.9%. Detection of glucose was demonstrated with the plasma obtained. Wetting property of channels was maintained by storing in DI water under vacuum and performance of the device was found to be unaffected over three weeks. PMID:28256564</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70021891','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70021891"><span>Semipermeable membrane devices used to estimate bioconcentration of polychlorinated biphenyls</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Chambers, D.B.</p> <p>1999-01-01</p> <p>Aquatic organisms passively accumulate hydrophobic organic compounds, such as polychlorinated biphenyls, even when ambient water concentrations of the contaminant are below analytical detection limits. However, contaminant concentrations in tissue samples are subject to an inherently high level of variability due to differences in species, life stage, and gender bioconcentration potentials. Semipermeable membrane devices (SPMDs) were used to sample Aroclor 1254, a mixture of readily bioconcentrated polychlorinated biphenyls (PCBs), in a contaminated wetland near Flat Top, WV. The devices consisted of triolein, a lipid found in fish, enclosed in a polyethylene membrane. SPMDs were deployed in the water column and in direct contact with wetland sediments along a previously identified concentration gradient of PCBs. The devices were retrieved after a 25-day exposure period. Analytes were recovered by dialyzing the devices in nanograde hexane. Hexane dialysates were condensed and analyzed by gas chromatography. All deployed devices sequestered quantifiable amounts of Aroclor 1254. Water-column SPMDs accumulated PCBs far in excess of ambient water concentrations. The devices contacting sediments accumulated PCBs at all sites, though accumulated concentrations did not exceed concentrations in sediment. Patterns of PCB concentration in the devices corresponded to the identified gradient at the site. Results from the water-column SPMDs were used to estimate the concentration of the dissolved, bioavailable fraction of PCBs present in the water column. These concentrations ranged from 0.01 to 0.09 ??g/L of bioavailable Aroclor 1254.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23763454','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23763454"><span>Gel-based coloration technique for the submillimeter-scale imaging of labile phosphorus in sediments and soils with diffusive gradients in thin films.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ding, Shiming; Wang, Yan; Xu, Di; Zhu, Chungang; Zhang, Chaosheng</p> <p>2013-07-16</p> <p>We report a highly promising technique for the high-resolution imaging of labile phosphorus (P) in sediments and soils in combination with the diffusive gradients in thin films (DGT). This technique was based on the surface coloration of the Zr-oxide binding gel using the conventional molybdenum blue method following the DGT uptake of P to this gel. The accumulated mass of the P in the gel was then measured according to the grayscale intensity on the gel surface using computer-imaging densitometry. A pretreatment of the gel in hot water (85 °C) for 5 d was required to immobilize the phosphate and the formed blue complex in the gel during the color development. The optimal time required for a complete color development was determined to be 45 min. The appropriate volume of the coloring reagent added was 200 times of that of the gel. A calibration equation was established under the optimized conditions, based on which a quantitative measurement of P was obtained when the concentration of P in solutions ranged from 0.04 mg L(-1) to 4.1 mg L(-1) for a 24 h deployment of typical DGT devices at 25 °C. The suitability of the coloration technique was well demonstrated by the observation of small, discrete spots with elevated P concentrations in a sediment profile.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017ECSS..197...80V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017ECSS..197...80V"><span>Hydrodynamic conditioning of diversity and functional traits in subtidal estuarine macrozoobenthic communities</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>van der Wal, Daphne; Lambert, Gwladys I.; Ysebaert, Tom; Plancke, Yves M. G.; Herman, Peter M. J.</p> <p>2017-10-01</p> <p>Variations in abundance and diversity of estuarine benthic macrofauna are typically described along the salinity gradient. The influence of gradients in water depth, hydrodynamic energy and sediment properties are less well known. We studied how these variables influence the distribution of subtidal macrofauna in the polyhaline zone of a temperate estuary (Westerschelde, SW Netherlands). Macrofauna density, biomass and species richness, combined in a so-called ecological richness, decreased with current velocities and median grain-size and increased with organic carbon of the sediment, in total explaining 39% of the variation. The macrofauna community composition was less well explained by the three environmental variables (approx. 12-15% in total, with current velocity explaining approx. 8%). Salinity, water depth and distance to the intertidal zone had a very limited effect on both ecological richness and the macrofauna community. The proportion of (surface) deposit feeders (including opportunistic species), decreased relative to that of omnivores and carnivores with increasing current velocity and sediment grain-size. In parallel, the proportion of burrowing sessile benthic species decreased relative to that of mobile benthic species that are able to swim. Correspondingly, spatial variations in hydrodynamics yielded distinct hotspots and coldspots in ecological richness. The findings highlight the importance of local hydrodynamic conditions for estuarine restoration and conservation. The study provides a tool based on a hydrodynamic model to assess and predict ecological richness in estuaries.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28017538','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28017538"><span>Sedimentation properties in density gradients correspond with levels of sperm DNA fragmentation, chromatin compaction and binding affinity to hyaluronic acid.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Torabi, Forough; Binduraihem, Adel; Miller, David</p> <p>2017-03-01</p> <p>Mature spermatozoa bind hyaluronic acid in the extracellular matrix via hyaladherins. Immature spermatozoa may be unable to interact because they do not express the appropriate hyaladherins on their surface. Fresh human semen samples were fractionated using differential density gradient centrifugation (DDGC) and the ability of these fractions to bind hyaluronic acid was evaluated. The presence of sperm hyaladherins was also assessed. CD44 was located mainly on the acrosome and equatorial segment and became more restricted to the equatorial segment in capacitated spermatozoa. Hyaluronic acid-TRITC (hyaluronic acid conjugated with tetramethylrhodamine isothiocyanante), a generic hyaluronic-acid-binding reagent, labelled the membrane and the neck region, particularly after capacitation. Sperm populations obtained after DDGC or after interaction with hyaluronic acid were assessed for DNA fragmentation and chromatin maturity. Strong relationships between both measures and sperm sedimentation and hyaluronic-acid-binding profiles were revealed. Capacitation enhanced hyaluronic acid binding of both DDGC-pelleted sperm and sperm washed free of seminal fluid. In conclusion, hyaladherins were detected on human sperm and a higher capacity for sperm hyaluronic-acid-binding was shown to correspond with their DDGC sedimentation profiles and with lower levels of DNA fragmentation and better chromatin maturity. Capacitation induced changes in the distribution and presence of hyaladherins may enhance hyaluronic-acid-binding. Copyright © 2016 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1345152','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1345152"><span>Se Isotopes as groundwater redox indicators: Detecting natural attenuation of Se at an in situ recovery U mine</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Anirban, Basu; Schilling, Kathrin; Brown, Shaun T.</p> <p></p> <p>One of the major ecological concerns associated with the in situ recovery (ISR) of uranium (U) is the environmental release of soluble, toxic selenium (Se) oxyanions generated by mining. Post-mining natural attenuation by the residual reductants in the ore body and reduced down-gradient sediments should mitigate the risk of Se contamination in groundwater. Here in this work, we investigate the Se concentrations and Se isotope systematics of groundwater and of U ore bearing sediments from an ISR site at Rosita, TX, USA. Our results show that selenate (Se(VI)) is the dominant Se species in Rosita groundwater, and while several up-gradientmore » wells have elevated Se(VI), the majority of the ore zone and down-gradient wells have little or no Se oxyanions. In addition, the δ 82SeVI of Rosita groundwater is generally elevated relative to the U ore up to +6.14‰, with the most enriched values observed in the ore-zone wells. Increasing δ 82Se with decreasing Se(VI) conforms to a Rayleigh type distillation model with an ε of $-$2.25‰ ± 0.61‰, suggesting natural Se(VI) reduction occurring along the hydraulic gradient at the Rosita ISR site. Moreover, our results show that Se isotopes are excellent sensors for detecting and monitoring post-mining natural attenuation of Se oxyanions at ISR sites.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.osti.gov/pages/biblio/1345152-se-isotopes-groundwater-redox-indicators-detecting-natural-attenuation-se-situ-recovery-mine','SCIGOV-DOEP'); return false;" href="https://www.osti.gov/pages/biblio/1345152-se-isotopes-groundwater-redox-indicators-detecting-natural-attenuation-se-situ-recovery-mine"><span>Se Isotopes as groundwater redox indicators: Detecting natural attenuation of Se at an in situ recovery U mine</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.osti.gov/pages">DOE PAGES</a></p> <p>Anirban, Basu; Schilling, Kathrin; Brown, Shaun T.; ...</p> <p>2016-08-22</p> <p>One of the major ecological concerns associated with the in situ recovery (ISR) of uranium (U) is the environmental release of soluble, toxic selenium (Se) oxyanions generated by mining. Post-mining natural attenuation by the residual reductants in the ore body and reduced down-gradient sediments should mitigate the risk of Se contamination in groundwater. Here in this work, we investigate the Se concentrations and Se isotope systematics of groundwater and of U ore bearing sediments from an ISR site at Rosita, TX, USA. Our results show that selenate (Se(VI)) is the dominant Se species in Rosita groundwater, and while several up-gradientmore » wells have elevated Se(VI), the majority of the ore zone and down-gradient wells have little or no Se oxyanions. In addition, the δ 82SeVI of Rosita groundwater is generally elevated relative to the U ore up to +6.14‰, with the most enriched values observed in the ore-zone wells. Increasing δ 82Se with decreasing Se(VI) conforms to a Rayleigh type distillation model with an ε of $-$2.25‰ ± 0.61‰, suggesting natural Se(VI) reduction occurring along the hydraulic gradient at the Rosita ISR site. Moreover, our results show that Se isotopes are excellent sensors for detecting and monitoring post-mining natural attenuation of Se oxyanions at ISR sites.« less</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5266265','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5266265"><span>Algal Turf Sediments and Sediment Production by Parrotfishes across the Continental Shelf of the Northern Great Barrier Reef</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Goatley, Christopher H. R.; Bellwood, David R.</p> <p>2017-01-01</p> <p>Sediments are found in the epilithic algal matrix (EAM) of all coral reefs and play important roles in ecological processes. Although we have some understanding of patterns of EAM sediments across individual reefs, our knowledge of patterns across broader spatial scales is limited. We used an underwater vacuum sampler to quantify patterns in two of the most ecologically relevant factors of EAM sediments across the Great Barrier Reef: total load and grain size distribution. We compare these patterns with rates of sediment production and reworking by parrotfishes to gain insights into the potential contribution of parrotfishes to EAM sediments. Inner-shelf reef EAMs had the highest sediment loads with a mean of 864.1 g m-2, compared to 126.8 g m-2 and 287.4 g m-2 on mid- and outer-shelf reefs, respectively. High sediment loads were expected on inner-shelf reefs due to their proximity to the mainland, however, terrigenous siliceous sediments only accounted for 13–24% of total mass. On inner-shelf reef crests parrotfishes would take three months to produce the equivalent mass of sediment found in the EAM. On the outer-shelf it would take just three days, suggesting that inner-shelf EAMs are characterised by low rates of sediment turnover. By contrast, on-reef sediment production by parrotfishes is high on outer-shelf crests. However, exposure to oceanic swells means that much of this production is likely to be lost. Hydrodynamic activity also appears to structure sediment patterns at within-reef scales, with coarser sediments (> 250 μm) typifying exposed reef crest EAMs, and finer sediments (< 250 μm) typifying sheltered back-reef EAMs. As both the load and grain size of EAM sediments mediate a number of important ecological processes on coral reefs, the observed sediment gradients are likely to play a key role in the structure and function of the associated coral reef communities. PMID:28122042</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018MNRAS.474..636G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018MNRAS.474..636G"><span>Effect of composition gradient on magnetothermal instability modified by shear and rotation</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Gupta, Himanshu; Chaudhuri, Anya; Sadhukhan, Shubhadeep; Chakraborty, Sagar</p> <p>2018-02-01</p> <p>We model the intracluster medium as a weakly collisional plasma that is a binary mixture of the hydrogen and the helium ions, along with free electrons. When, owing to the helium sedimentation, the gradient of the mean-molecular weight (or equivalently, composition or helium ions' concentration) of the plasma is not negligible, it can have appreciable influence on the stability criteria of the thermal convective instabilities, e.g. the heat-flux-buoyancy instability and the magnetothermal instability (MTI). These instabilities are consequences of the anisotropic heat conduction occurring preferentially along the magnetic field lines. In this paper, without ignoring the magnetic tension, we first present the mathematical criterion for the onset of composition gradient modified MTI. Subsequently, we relax the commonly adopted equilibrium state in which the plasma is at rest, and assume that the plasma is in a sheared state which may be due to differential rotation. We discuss how the concentration gradient affects the coupling between the Kelvin-Helmholtz instability and the MTI in rendering the plasma unstable or stable. We derive exact stability criterion by working with the sharp boundary case in which the physical variables - temperature, mean-molecular weight, density and magnetic field - change discontinuously from one constant value to another on crossing the boundary. Finally, we perform the linear stability analysis for the case of the differentially rotating plasma that is thermally and compositionally stratified as well. By assuming axisymmetric perturbations, we find the corresponding dispersion relation and the explicit mathematical expression determining the onset of the modified MTI.</p> </li> <li> <p><a target="_blank" rel="noopener noreferrer" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29934827','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29934827"><span>Modeling of sediment transport in a saltwater lake with supplemental sandy freshwater.</span></a></p> <p><a target="_blank" rel="noopener noreferrer" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Liang, Li; Deng, Yun; Li, Ran; Li, Jia</p> <p>2018-06-22</p> <p>Considering the highly complex flow structure of saltwater lakes during freshwater supplementation, a three-dimensional numerical model was developed to simulate suspended sediment transport in saltwater lakes. The model was validated using measurements of the salinity and sediment concentration during a pumping test at Yamdrok Lake. The simulation results were in quantitative agreement with the measured data. The observed and simulated results also indicated that the wind stress and vertical salinity gradient have a significant influence on salinity and sediment transport in a saltwater lake. The validated model was then used to predict and analyze the contributions of wind, the supplement flow rate and salinity stratification to the sediment transport process in Yamdrok Lake during continuous river water supplementation. The simulation results showed that after the sandy river water was continuously discharged into the saltwater lake, the lateral diffusion trends of the sediment exhibited three stages: linear growth in the inflow direction, logarithmic growth in the wind direction, and stabilization. Furthermore, wind was the dominant factor in driving the lake flow pattern and sediment transport. Specifically, wind can effectively reduce the area of the sediment diffusion zone by increasing the lateral sediment carrying and dilution capacities. The effect of inflow on the lake current is negligible, but the extent of the sediment turbidity zone mainly depends on the inflow. Reducing the inflow discharge can decrease the area of the sediment turbidity zone to proportions that far exceed the proportions of inflow discharge reductions. In addition, the high-salinity lake water can support the supplemented freshwater via buoyancy forces, which weaken vertical mixing and sediment settlement and increase lake currents and sediment diffusion near the surface.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li class="active"><span>25</span></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_25 --> <div class="footer-extlink text-muted" style="margin-bottom:1rem; text-align:center;">Some links on this page may take you to non-federal websites. 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