Implications of solar p-mode frequency shifts

NASA Technical Reports Server (NTRS)

Goldreich, Peter; Murray, Norman; Willette, Gregory; Kumar, Pawan

1991-01-01

An expression is derived that relates solar p-mode frequency shifts to changes in the entropy and magnetic field of the sun. The frequency variations result from changes in path length and propagation speed. Path length changes dominate for entropy perturbations, and propagation speed changes dominate for most types of magnetic field peturbations. The p-mode frequencies increased along with solar activity between 1986 and 1989; these frequency shifts exhibited a rapid rise with increasing frequency followed by a precipitous drop. The positive component of the shifts can be accounted for by variations of the mean square magnetic field strength in the vicinity of the photosphere. The magnetic stress perturbation decays above the top of the convection zone on a length scale comparable to the pressure scale height and grows gradually with depth below. The presence of a resonance in the chromospheric cavity means that the transition layer maintains enough coherence to partially reflect acoustic waves even near cycle maximum.

Extending the length and time scales of Gram–Schmidt Lyapunov vector computations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Costa, Anthony B., E-mail: acosta@northwestern.edu; Green, Jason R., E-mail: jason.green@umb.edu; Department of Chemistry, University of Massachusetts Boston, Boston, MA 02125

Lyapunov vectors have found growing interest recently due to their ability to characterize systems out of thermodynamic equilibrium. The computation of orthogonal Gram–Schmidt vectors requires multiplication and QR decomposition of large matrices, which grow as N{sup 2} (with the particle count). This expense has limited such calculations to relatively small systems and short time scales. Here, we detail two implementations of an algorithm for computing Gram–Schmidt vectors. The first is a distributed-memory message-passing method using Scalapack. The second uses the newly-released MAGMA library for GPUs. We compare the performance of both codes for Lennard–Jones fluids from N=100 to 1300 betweenmore » Intel Nahalem/Infiniband DDR and NVIDIA C2050 architectures. To our best knowledge, these are the largest systems for which the Gram–Schmidt Lyapunov vectors have been computed, and the first time their calculation has been GPU-accelerated. We conclude that Lyapunov vector calculations can be significantly extended in length and time by leveraging the power of GPU-accelerated linear algebra.« less

Universal Quake Statistics: From Compressed Nanocrystals to Earthquakes

DOE PAGES

Uhl, Jonathan T.; Pathak, Shivesh; Schorlemmer, Danijel; ...

2015-11-17

Slowly-compressed single crystals, bulk metallic glasses (BMGs), rocks, granular materials, and the earth all deform via intermittent slips or “quakes”. We find that although these systems span 12 decades in length scale, they all show the same scaling behavior for their slip size distributions and other statistical properties. Remarkably, the size distributions follow the same power law multiplied with the same exponential cutoff. The cutoff grows with applied force for materials spanning length scales from nanometers to kilometers. The tuneability of the cutoff with stress reflects “tuned critical” behavior, rather than self-organized criticality (SOC), which would imply stress-independence. A simplemore » mean field model for avalanches of slipping weak spots explains the agreement across scales. It predicts the observed slip-size distributions and the observed stressdependent cutoff function. In conclusion, the results enable extrapolations from one scale to another, and from one force to another, across different materials and structures, from nanocrystals to earthquakes.« less

Exact solution for the Poisson field in a semi-infinite strip.

PubMed

Cohen, Yossi; Rothman, Daniel H

2017-04-01

The Poisson equation is associated with many physical processes. Yet exact analytic solutions for the two-dimensional Poisson field are scarce. Here we derive an analytic solution for the Poisson equation with constant forcing in a semi-infinite strip. We provide a method that can be used to solve the field in other intricate geometries. We show that the Poisson flux reveals an inverse square-root singularity at a tip of a slit, and identify a characteristic length scale in which a small perturbation, in a form of a new slit, is screened by the field. We suggest that this length scale expresses itself as a characteristic spacing between tips in real Poisson networks that grow in response to fluxes at tips.

How Do Normal Faults Grow?

NASA Astrophysics Data System (ADS)

Jackson, C. A. L.; Bell, R. E.; Rotevatn, A.; Tvedt, A. B. M.

2015-12-01

Normal faulting accommodates stretching of the Earth's crust and is one of the fundamental controls on landscape evolution and sediment dispersal in rift basins. Displacement-length scaling relationships compiled from global datasets suggest normal faults grow via a sympathetic increase in these two parameters (the 'isolated fault model'). This model has dominated the structural geology literature for >20 years and underpins the structural and tectono-stratigraphic models developed for active rifts. However, relatively recent analysis of high-quality 3D seismic reflection data suggests faults may grow by rapid establishment of their near-final length prior to significant displacement accumulation (the 'coherent fault model'). The isolated and coherent fault models make very different predictions regarding the tectono-stratigraphic evolution of rift basin, thus assessing their applicability is important. To-date, however, very few studies have explicitly set out to critically test the coherent fault model thus, it may be argued, it has yet to be widely accepted in the structural geology community. Displacement backstripping is a simple graphical technique typically used to determine how faults lengthen and accumulate displacement; this technique should therefore allow us to test the competing fault models. However, in this talk we use several subsurface case studies to show that the most commonly used backstripping methods (the 'original' and 'modified' methods) are, however, of limited value, because application of one over the other requires an a priori assumption of the model most applicable to any given fault; we argue this is illogical given that the style of growth is exactly what the analysis is attempting to determine. We then revisit our case studies and demonstrate that, in the case of seismic-scale growth faults, growth strata thickness patterns and relay zone kinematics, rather than displacement backstripping, should be assessed to directly constrain fault length and thus tip behaviour through time. We conclude that rapid length establishment prior to displacement accumulation may be more common than is typically assumed, thus challenging the well-established, widely cited and perhaps overused, isolated fault model.

Nanoscale interfacial defect shedding in a growing nematic droplet.

PubMed

Gurevich, Sebastian; Provatas, Nikolas; Rey, Alejandro

2017-08-01

Interfacial defect shedding is the most recent known mechanism for defect formation in a thermally driven isotropic-to-nematic phase transition. It manifests in nematic-isotropic interfaces going through an anchoring switch. Numerical computations in planar geometry established that a growing nematic droplet can undergo interfacial defect shedding, nucleating interfacial defect structures that shed into the bulk as +1/2 point defects. By extending the study of interfacial defect shedding in a growing nematic droplet to larger length and time scales, and to three dimensions, we unveil an oscillatory growth mode involving shape and anchoring transitions that results in a controllable regular distributions of point defects in planar geometry, and complex structures of disclination lines in three dimensions.

Are X-rays the key to integrated computational materials engineering?

DOE PAGES

Ice, Gene E.

2015-11-01

The ultimate dream of materials science is to predict materials behavior from composition and processing history. Owing to the growing power of computers, this long-time dream has recently found expression through worldwide excitement in a number of computation-based thrusts: integrated computational materials engineering, materials by design, computational materials design, three-dimensional materials physics and mesoscale physics. However, real materials have important crystallographic structures at multiple length scales, which evolve during processing and in service. Moreover, real materials properties can depend on the extreme tails in their structural and chemical distributions. This makes it critical to map structural distributions with sufficient resolutionmore » to resolve small structures and with sufficient statistics to capture the tails of distributions. For two-dimensional materials, there are high-resolution nondestructive probes of surface and near-surface structures with atomic or near-atomic resolution that can provide detailed structural, chemical and functional distributions over important length scales. Furthermore, there are no nondestructive three-dimensional probes with atomic resolution over the multiple length scales needed to understand most materials.« less

Patterns and scaling properties of surface soil moisture in an agricultural landscape: An ecohydrological modeling study

NASA Astrophysics Data System (ADS)

Korres, W.; Reichenau, T. G.; Schneider, K.

2013-08-01

Soil moisture is a key variable in hydrology, meteorology and agriculture. Soil moisture, and surface soil moisture in particular, is highly variable in space and time. Its spatial and temporal patterns in agricultural landscapes are affected by multiple natural (precipitation, soil, topography, etc.) and agro-economic (soil management, fertilization, etc.) factors, making it difficult to identify unequivocal cause and effect relationships between soil moisture and its driving variables. The goal of this study is to characterize and analyze the spatial and temporal patterns of surface soil moisture (top 20 cm) in an intensively used agricultural landscape (1100 km2 northern part of the Rur catchment, Western Germany) and to determine the dominant factors and underlying processes controlling these patterns. A second goal is to analyze the scaling behavior of surface soil moisture patterns in order to investigate how spatial scale affects spatial patterns. To achieve these goals, a dynamically coupled, process-based and spatially distributed ecohydrological model was used to analyze the key processes as well as their interactions and feedbacks. The model was validated for two growing seasons for the three main crops in the investigation area: Winter wheat, sugar beet, and maize. This yielded RMSE values for surface soil moisture between 1.8 and 7.8 vol.% and average RMSE values for all three crops of 0.27 kg m-2 for total aboveground biomass and 0.93 for green LAI. Large deviations of measured and modeled soil moisture can be explained by a change of the infiltration properties towards the end of the growing season, especially in maize fields. The validated model was used to generate daily surface soil moisture maps, serving as a basis for an autocorrelation analysis of spatial patterns and scale. Outside of the growing season, surface soil moisture patterns at all spatial scales depend mainly upon soil properties. Within the main growing season, larger scale patterns that are induced by soil properties are superimposed by the small scale land use pattern and the resulting small scale variability of evapotranspiration. However, this influence decreases at larger spatial scales. Most precipitation events cause temporarily higher surface soil moisture autocorrelation lengths at all spatial scales for a short time even beyond the autocorrelation lengths induced by soil properties. The relation of daily spatial variance to the spatial scale of the analysis fits a power law scaling function, with negative values of the scaling exponent, indicating a decrease in spatial variability with increasing spatial resolution. High evapotranspiration rates cause an increase in the small scale soil moisture variability, thus leading to large negative values of the scaling exponent. Utilizing a multiple regression analysis, we found that 53% of the variance of the scaling exponent can be explained by a combination of an independent LAI parameter and the antecedent precipitation.

Vertical length scale selection for pancake vortices in strongly stratified viscous fluids

NASA Astrophysics Data System (ADS)

Godoy-Diana, Ramiro; Chomaz, Jean-Marc; Billant, Paul

2004-04-01

The evolution of pancake dipoles of different aspect ratio is studied in a stratified tank experiment. Two cases are reported here for values of the dipole initial aspect ratio alpha_0 = L_v/L_h (where L_v and L_h are vertical and horizontal length scales, respectively) of alpha_0 = 0.4 (case I) and alpha_0 = 1.2 (case II). In the first case, the usual decay scenario is observed where the dipole diffuses slowly with a growing thickness and a decaying circulation. In case II, we observed a regime where the thickness of the dipole decreases and the circulation in the horizontal mid-plane of the vortices remains constant. We show that this regime where the vertical length scale decreases can be explained by the shedding of two boundary layers at the top and bottom of the dipole that literally peel off vorticity layers. Horizontal advection and vertical diffusion cooperate in this regime and the decrease towards the viscous vertical length scale delta = L_hRe(-1/2) occurs on a time scale alpha_0 Re(1/2) T_A, T_A being the advection time L_h/U. From a scaling analysis of the equations for a stratified viscous fluid in the Boussinesq approximation, two dominant balances depending on the parameter R = ReF_h(2) are discussed, where F_h = U/NL_h is the horizontal Froude number and Re = UL_h/nu is the Reynolds number, U, N and nu being, respectively, the translation speed of the dipole, the Brunt Väisälä frequency and the kinematic viscosity. When R≫ 1 the vertical length scale is determined by buoyancy effects to be of order L_b = U/N. The experiments presented in this paper pertain to the case of small R, where viscous effects govern the selection of the vertical length scale. We show that if initially L_v ≤ delta, the flow diffuses on the vertical (case I), while if L_v ≫ delta (case II), vertically sheared horizontal advection decreases the vertical length scale down to delta. This viscous regime may explain results from experiments and numerical simulations on the late evolution of stratified flows where the decay is observed to be independent of the buoyancy frequency N.

Solid-solid collapse transition in a two dimensional model molecular system.

PubMed

Singh, Rakesh S; Bagchi, Biman

2013-11-21

Solid-solid collapse transition in open framework structures is ubiquitous in nature. The real difficulty in understanding detailed microscopic aspects of such transitions in molecular systems arises from the interplay between different energy and length scales involved in molecular systems, often mediated through a solvent. In this work we employ Monte-Carlo simulation to study the collapse transition in a model molecular system interacting via both isotropic as well as anisotropic interactions having different length and energy scales. The model we use is known as Mercedes-Benz (MB), which, for a specific set of parameters, sustains two solid phases: honeycomb and oblique. In order to study the temperature induced collapse transition, we start with a metastable honeycomb solid and induce transition by increasing temperature. High density oblique solid so formed has two characteristic length scales corresponding to isotropic and anisotropic parts of interaction potential. Contrary to the common belief and classical nucleation theory, interestingly, we find linear strip-like nucleating clusters having significantly different order and average coordination number than the bulk stable phase. In the early stage of growth, the cluster grows as a linear strip, followed by branched and ring-like strips. The geometry of growing cluster is a consequence of the delicate balance between two types of interactions, which enables the dominance of stabilizing energy over destabilizing surface energy. The nucleus of stable oblique phase is wetted by intermediate order particles, which minimizes the surface free energy. In the case of pressure induced transition at low temperature the collapsed state is a disordered solid. The disordered solid phase has diverse local quasi-stable structures along with oblique-solid like domains.

Solid-solid collapse transition in a two dimensional model molecular system

NASA Astrophysics Data System (ADS)

Singh, Rakesh S.; Bagchi, Biman

2013-11-01

Solid-solid collapse transition in open framework structures is ubiquitous in nature. The real difficulty in understanding detailed microscopic aspects of such transitions in molecular systems arises from the interplay between different energy and length scales involved in molecular systems, often mediated through a solvent. In this work we employ Monte-Carlo simulation to study the collapse transition in a model molecular system interacting via both isotropic as well as anisotropic interactions having different length and energy scales. The model we use is known as Mercedes-Benz (MB), which, for a specific set of parameters, sustains two solid phases: honeycomb and oblique. In order to study the temperature induced collapse transition, we start with a metastable honeycomb solid and induce transition by increasing temperature. High density oblique solid so formed has two characteristic length scales corresponding to isotropic and anisotropic parts of interaction potential. Contrary to the common belief and classical nucleation theory, interestingly, we find linear strip-like nucleating clusters having significantly different order and average coordination number than the bulk stable phase. In the early stage of growth, the cluster grows as a linear strip, followed by branched and ring-like strips. The geometry of growing cluster is a consequence of the delicate balance between two types of interactions, which enables the dominance of stabilizing energy over destabilizing surface energy. The nucleus of stable oblique phase is wetted by intermediate order particles, which minimizes the surface free energy. In the case of pressure induced transition at low temperature the collapsed state is a disordered solid. The disordered solid phase has diverse local quasi-stable structures along with oblique-solid like domains.

Phenological research of climate changes in the north part of Lithuania by the phenological garden of Šiauliai University.

PubMed

Klimienė, Asta; Vainorienė, Rimanta; Klimas, Ramutis

2017-02-01

Šiauliai University Botanical Garden is a member of the International Phenological Garden network since 2005. It is the only one botanical garden in the East Europe that participated in the programme. In 2015, 18 species were observed. For research, data of 14 plants was used. The aim of this study is to estimate the responsiveness of the species of plants of the phenological garden to annual and monthly precipitation and temperature of the air. The main variables in this investigation were growing season length and the beginning of the growing season. In the period 2006-2015, the lowest annual air temperature was in 2010 (6.0 °C), and the highest was in 2015 (8.9 °C). The lowest precipitation was in 2015 (37.3 mm), and the highest was in 2012 (63.5 mm). The leanest regression among growing length, average annual precipitation, and air temperature showed that statistically significant correlation between growing length and average annual air temperature was found for nine plants, between growing length and precipitation was found for three plants, and between growing length and both factors was found for one plant, Salix smithiana, only. Due to the short evaluating period (2007-2015), consistent regression of the length of the growing season could not be found. The growing length of Betula pubescens sequentially increased. The average growing season of 14 plants starts on April 27 (±3), but for Corylus avellana, it is on April 26 (±3). Longevity of the growing season was the most related with precipitation for C. avellana in summer, autumn, and winter and with air temperature, Ribes alpinum and Salix acutifolia in summer and in autumn.

Otoliths reveal a diverse age structure for humper lake trout in Lake Superior

USGS Publications Warehouse

Burnham-Curtis, Mary K.; Bronte, Charles R.

1996-01-01

Humpers are one of at least three morphological variants of wild lake trout Salvelinus namaycush that maintain self-sustaining populations in Lake Superior. In an early study, bumpers from Isle Royale were shown to have a sharply truncated age distribution that was attributed to high mortality after age 11, but we suspected that these fish were underaged. In August of 1989 and 1992 we collected spawning humper lake trout from the same area and estimated their ages using both scales and sagittal otoliths. Humpers in our sample ranged from 5 to 13 years, based on scale annuli, but counts of sagitta annuli revealed ages of 8 to 28 years. Individual discrepancies between ages from scales and sagittae varied from –2 to 20 years, but differences between scale and otolith ages did not increase with individual age. We applied the von Bertalanffy growth model to the humper length-at-age data to indirectly assess the accuracy of aging estimates. The model significantly overestimated mean asymptotic length when scale ages were used, but the mean asymptotic length estimate was more similar to observed lengths when sagitta ages were used. Our results corroborate evidence that bumpers in Lake Superior grow more slowly and mature at a smaller size than lean lake trout; however, the age composition of bumpers is more diverse than previously thought. This particular population experiences little or no exploitation; the presence of older fish provides one standard by which the success of lake trout rehabilitation programs can be evaluated and emphasizes the need for accurate aging techniques.

Turbulence and entrainment length scales in large wind farms.

PubMed

Andersen, Søren J; Sørensen, Jens N; Mikkelsen, Robert F

2017-04-13

A number of large wind farms are modelled using large eddy simulations to elucidate the entrainment process. A reference simulation without turbines and three farm simulations with different degrees of imposed atmospheric turbulence are presented. The entrainment process is assessed using proper orthogonal decomposition, which is employed to detect the largest and most energetic coherent turbulent structures. The dominant length scales responsible for the entrainment process are shown to grow further into the wind farm, but to be limited in extent by the streamwise turbine spacing, which could be taken into account when developing farm layouts. The self-organized motion or large coherent structures also yield high correlations between the power productions of consecutive turbines, which can be exploited through dynamic farm control.This article is part of the themed issue 'Wind energy in complex terrains'. © 2017 The Author(s).

Turbulence and entrainment length scales in large wind farms

PubMed Central

2017-01-01

A number of large wind farms are modelled using large eddy simulations to elucidate the entrainment process. A reference simulation without turbines and three farm simulations with different degrees of imposed atmospheric turbulence are presented. The entrainment process is assessed using proper orthogonal decomposition, which is employed to detect the largest and most energetic coherent turbulent structures. The dominant length scales responsible for the entrainment process are shown to grow further into the wind farm, but to be limited in extent by the streamwise turbine spacing, which could be taken into account when developing farm layouts. The self-organized motion or large coherent structures also yield high correlations between the power productions of consecutive turbines, which can be exploited through dynamic farm control. This article is part of the themed issue ‘Wind energy in complex terrains’. PMID:28265028

Using the Space-Borne NASA Scatterometer (NSCAT) to Determine The Frozen and Thawed Seasons of a Boreal Landscape

NASA Technical Reports Server (NTRS)

Frolking, S.; McDonald, K. C.; Kimball, J. S.; Way, J. B.; Zimmermann, R.; Running, S. W.

1998-01-01

We hypothesize that the strong sensitivity of radar backscatter to surface dielectric properties, and hence to the phase (solid or liquid) of any water near the surface, should make space-borne radar observations a powerful tool for large-scale spatial monitoring of the freeze/thaw state of the land surface, and thus ecosystem growing season length.

Time scales of supercooled water and implications for reversible polyamorphism

NASA Astrophysics Data System (ADS)

Limmer, David T.; Chandler, David

2015-09-01

Deeply supercooled water exhibits complex dynamics with large density fluctuations, ice coarsening and characteristic time scales extending from picoseconds to milliseconds. Here, we discuss implications of these time scales as they pertain to two-phase coexistence and to molecular simulations of supercooled water. Specifically, we argue that it is possible to discount liquid-liquid criticality because the time scales imply that correlation lengths for such behaviour would be bounded by no more than a few nanometres. Similarly, it is possible to discount two-liquid coexistence because the time scales imply a bounded interfacial free energy that cannot grow in proportion to a macroscopic surface area. From time scales alone, therefore, we see that coexisting domains of differing density in supercooled water can be no more than nanoscale transient fluctuations.

How do normal faults grow?

NASA Astrophysics Data System (ADS)

Jackson, Christopher; Bell, Rebecca; Rotevatn, Atle; Tvedt, Anette

2016-04-01

Normal faulting accommodates stretching of the Earth's crust, and it is arguably the most fundamental tectonic process leading to continent rupture and oceanic crust emplacement. Furthermore, the incremental and finite geometries associated with normal faulting dictate landscape evolution, sediment dispersal and hydrocarbon systems development in rifts. Displacement-length scaling relationships compiled from global datasets suggest normal faults grow via a sympathetic increase in these two parameters (the 'isolated fault model'). This model has dominated the structural geology literature for >20 years and underpins the structural and tectono-stratigraphic models developed for active rifts. However, relatively recent analysis of high-quality 3D seismic reflection data suggests faults may grow by rapid establishment of their near-final length prior to significant displacement accumulation (the 'coherent fault model'). The isolated and coherent fault models make very different predictions regarding the tectono-stratigraphic evolution of rift basin, thus assessing their applicability is important. To-date, however, very few studies have explicitly set out to critically test the coherent fault model thus, it may be argued, it has yet to be widely accepted in the structural geology community. Displacement backstripping is a simple graphical technique typically used to determine how faults lengthen and accumulate displacement; this technique should therefore allow us to test the competing fault models. However, in this talk we use several subsurface case studies to show that the most commonly used backstripping methods (the 'original' and 'modified' methods) are, however, of limited value, because application of one over the other requires an a priori assumption of the model most applicable to any given fault; we argue this is illogical given that the style of growth is exactly what the analysis is attempting to determine. We then revisit our case studies and demonstrate that, in the case of seismic-scale growth faults, growth strata thickness patterns and relay zone kinematics, rather than displacement backstripping, should be assessed to directly constrain fault length and thus tip behaviour through time. We conclude that rapid length establishment prior to displacement accumulation may be more common than is typically assumed, thus challenging the well-established, widely cited and perhaps overused, isolated fault model.

Configuration memory in patchwork dynamics for low-dimensional spin glasses

NASA Astrophysics Data System (ADS)

Yang, Jie; Middleton, A. Alan

2017-12-01

A patchwork method is used to study the dynamics of loss and recovery of an initial configuration in spin glass models in dimensions d =1 and d =2 . The patchwork heuristic is used to accelerate the dynamics to investigate how models might reproduce the remarkable memory effects seen in experiment. Starting from a ground-state configuration computed for one choice of nearest-neighbor spin couplings, the sample is aged up to a given scale under new random couplings, leading to the partial erasure of the original ground state. The couplings are then restored to the original choice and patchwork coarsening is again applied, in order to assess the recovery of the original state. Eventual recovery of the original ground state upon coarsening is seen in two-dimensional Ising spin glasses and one-dimensional clock models, while one-dimensional Ising spin systems neither lose nor gain overlap with the ground state during the recovery stage. The recovery for the two-dimensional Ising spin glasses suggests scaling relations that lead to a recovery length scale that grows as a power of the aging length scale.

HIV/AIDS, childhood and governance: sundering the bonds of human society.

PubMed

Barnett, Tony

2005-12-01

There is a disharmonious resonance between the length of HIV infection in the individual human host and the length of a human generation. In brief, an infected person may have children, these may be orphaned and grow up to become infected, and afterwards they themselves may have children, who can be orphaned in turn. Hence, a basic unit of social structure in most human societies, the three-generation bond between grandparents, parents and the current generation - and on into the future - is repeatedly torn apart in the absence of treatment, a vaccine or behaviour change. This situation should be read against the threat of growing viral resistance. Certain implications of these processes for the future are outlined and discussed. The paper notes the uncertain future confronting societies that already have a relatively high number of orphans, and considers some otherwise unexpected possibilities, as well as the dangers of assuming that large-scale orphaning necessarily leads to social unrest and disorder.

Scaling of cluster growth for coagulating active particles

NASA Astrophysics Data System (ADS)

Cremer, Peet; Löwen, Hartmut

2014-02-01

Cluster growth in a coagulating system of active particles (such as microswimmers in a solvent) is studied by theory and simulation. In contrast to passive systems, the net velocity of a cluster can have various scalings dependent on the propulsion mechanism and alignment of individual particles. Additionally, the persistence length of the cluster trajectory typically increases with size. As a consequence, a growing cluster collects neighboring particles in a very efficient way and thus amplifies its growth further. This results in unusual large growth exponents for the scaling of the cluster size with time and, for certain conditions, even leads to "explosive" cluster growth where the cluster becomes macroscopic in a finite amount of time.

Difference in growth and coalescing patterns of droplets on bi-philic surfaces with varying spatial distribution.

PubMed

Garimella, Martand Mayukh; Koppu, Sudheer; Kadlaskar, Shantanu Shrikant; Pillutla, Venkata; Abhijeet; Choi, Wonjae

2017-11-01

This paper reports the condensation and subsequent motion of water droplets on bi-philic surfaces, surfaces that are patterned with regions of different wettability. Bi-philic surfaces can enhance the water collection efficiency: droplets condensing on hydrophobic regions wick into hydrophilic drain channels when droplets grow to a certain size, renewing the condensation on the dry hydrophobic region. The onset of drain phenomenon can be triggered by multiple events with distinct nature ranging from gravity, direct contact between a droplet and a drain channel, to a mutual coalescence between droplets. This paper focuses on the effect of the length scale of hydrophobic regions on the dynamics of mutual coalescence between droplets and subsequent drainage. The main hypothesis was that, when the drop size is sufficient, the kinetic energy associated with a coalescence of droplets may cause dynamic advancing of a newly formed drop, leading to further coalescence with nearby droplets and ultimately to a chain reaction. We fabricate bi-philic surfaces with hydrophilic and hydrophobic stripes, and the result confirms that coalescing droplets, when the length scale of droplets increases beyond 0.2mm, indeed display dynamic expansion and chain reaction. Multiple droplets can thus migrate to hydrophilic drain simultaneously even when the initial motion of the droplets was not triggered by the direct contact between the droplet and the hydrophilic drain. Efficiency of drain due to mutual coalescence of droplets varies depending on the length scale of bi-philic patterns, and the drain phenomenon reaches its peak when the width of hydrophobic stripes is between 800μm and 1mm. The Ohnesorge number of droplets draining on noted surfaces is between 0.0042 and 0.0037 respectively. The observed length scale of bi-philic patterns matches that on the Stenocara beetle's fog harvesting back surface. This match between length scales suggests that the surface of the insect is optimized for the drain of harvested water. Copyright © 2017 Elsevier Inc. All rights reserved.

Earthquake scaling laws for rupture geometry and slip heterogeneity

NASA Astrophysics Data System (ADS)

Thingbaijam, Kiran K. S.; Mai, P. Martin; Goda, Katsuichiro

2016-04-01

We analyze an extensive compilation of finite-fault rupture models to investigate earthquake scaling of source geometry and slip heterogeneity to derive new relationships for seismic and tsunami hazard assessment. Our dataset comprises 158 earthquakes with a total of 316 rupture models selected from the SRCMOD database (http://equake-rc.info/srcmod). We find that fault-length does not saturate with earthquake magnitude, while fault-width reveals inhibited growth due to the finite seismogenic thickness. For strike-slip earthquakes, fault-length grows more rapidly with increasing magnitude compared to events of other faulting types. Interestingly, our derived relationship falls between the L-model and W-model end-members. In contrast, both reverse and normal dip-slip events are more consistent with self-similar scaling of fault-length. However, fault-width scaling relationships for large strike-slip and normal dip-slip events, occurring on steeply dipping faults (δ~90° for strike-slip faults, and δ~60° for normal faults), deviate from self-similarity. Although reverse dip-slip events in general show self-similar scaling, the restricted growth of down-dip fault extent (with upper limit of ~200 km) can be seen for mega-thrust subduction events (M~9.0). Despite this fact, for a given earthquake magnitude, subduction reverse dip-slip events occupy relatively larger rupture area, compared to shallow crustal events. In addition, we characterize slip heterogeneity in terms of its probability distribution and spatial correlation structure to develop a complete stochastic random-field characterization of earthquake slip. We find that truncated exponential law best describes the probability distribution of slip, with observable scale parameters determined by the average and maximum slip. Applying Box-Cox transformation to slip distributions (to create quasi-normal distributed data) supports cube-root transformation, which also implies distinctive non-Gaussian slip distributions. To further characterize the spatial correlations of slip heterogeneity, we analyze the power spectral decay of slip applying the 2-D von Karman auto-correlation function (parameterized by the Hurst exponent, H, and correlation lengths along strike and down-slip). The Hurst exponent is scale invariant, H = 0.83 (± 0.12), while the correlation lengths scale with source dimensions (seismic moment), thus implying characteristic physical scales of earthquake ruptures. Our self-consistent scaling relationships allow constraining the generation of slip-heterogeneity scenarios for physics-based ground-motion and tsunami simulations.

Length distributions of nanowires: Effects of surface diffusion versus nucleation delay

NASA Astrophysics Data System (ADS)

Dubrovskii, Vladimir G.

2017-04-01

It is often thought that the ensembles of semiconductor nanowires are uniform in length due to the initial organization of the growth seeds such as lithographically defined droplets or holes in the substrate. However, several recent works have already demonstrated that most nanowire length distributions are broader than Poissonian. Herein, we consider theoretically the length distributions of non-interacting nanowires that grow by the material collection from the entire length of their sidewalls and with a delay of nucleation of the very first nanowire monolayer. The obtained analytic length distribution is controlled by two parameters that describe the strength of surface diffusion and the nanowire nucleation rate. We show how the distribution changes from the symmetrical Polya shape without the nucleation delay to a much broader and asymmetrical one for longer delays. In the continuum limit (for tall enough nanowires), the length distribution is given by a power law times an incomplete gamma-function. We discuss interesting scaling properties of this solution and give a recipe for analyzing and tailoring the experimental length histograms of nanowires which should work for a wide range of material systems and growth conditions.

Casual Set Approach to a Minimal Invariant Length

NASA Astrophysics Data System (ADS)

Raut, Usha

2007-04-01

Any attempt to quantize gravity would necessarily introduce a minimal observable length scale of the order of the Planck length. This conclusion is based on several different studies and thought experiments and appears to be an inescapable feature of all quantum gravity theories, irrespective of the method used to quantize gravity. Over the last few years there has been growing concern that such a minimal length might lead to a contradiction with the basic postulates of special relativity, in particular the Lorentz-Fitzgerald contraction. A few years ago, Rovelli et.al, attempted to reconcile an invariant minimal length with Special Relativity, using the framework of loop quantum gravity. However, the inherently canonical formalism of the loop quantum approach is plagued by a variety of problems, many brought on by separation of space and time co-ordinates. In this paper we use a completely different approach. Using the framework of the causal set paradigm, along with a statistical measure of closeness between Lorentzian manifolds, we re-examine the issue of introducing a minimal observable length that is not at odds with Special Relativity postulates.

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

PubMed

Tárraga, Joaquín; Arnau, Vicente; Martínez, Héctor; Moreno, Raul; Cazorla, Diego; Salavert-Torres, José; Blanquer-Espert, Ignacio; Dopazo, Joaquín; Medina, Ignacio

2014-12-01

HPG Aligner applies suffix arrays for DNA read mapping. This implementation produces a highly sensitive and extremely fast mapping of DNA reads that scales up almost linearly with read length. The approach presented here is faster (over 20× for long reads) and more sensitive (over 98% in a wide range of read lengths) than the current state-of-the-art mappers. HPG Aligner is not only an optimal alternative for current sequencers but also the only solution available to cope with longer reads and growing throughputs produced by forthcoming sequencing technologies. https://github.com/opencb/hpg-aligner. © The Author 2014. Published by Oxford University Press.

Evolution of Pull-Apart Basins and Their Scale Independence

NASA Astrophysics Data System (ADS)

Aydin, Atilla; Nur, Amos

1982-02-01

Pull-apart basins or rhomb grabens and horsts along major strike-slip fault systems in the world are generally associated with horizontal slip along faults. A simple model suggests that the width of the rhombs is controlled by the initial fault geometry, whereas the length increases with increasing fault displacement. We have tested this model by analyzing the shapes of 70 well-defined rhomb-like pull-apart basins and pressure ridges, ranging from tens of meters to tens of kilometers in length, associated with several major strike-slip faults in the western United States, Israel, Turkey, Iran, Guatemala, Venezuela, and New Zealand. In conflict with the model, we find that the length to width ratio of these basins is a constant value of approximately 3; these basins become wider as they grow longer with increasing fault offset. Two possible mechanisms responsible for the increase in width are suggested: (1) coalescence of neighboring rhomb grabens as each graben increases its length and (2) formation of fault strands parallel to the existing ones when large displacements need to be accommodated. The processes of formation and growth of new fault strands promote interaction among the new faults and between the new and preexisting faults on a larger scale. Increased displacement causes the width of the fault zone to increase resulting in wider pull-apart basins.

Elevation-dependent temperature trends in the Rocky Mountain Front Range: changes over a 56- and 20-year record.

PubMed

McGuire, Chris R; Nufio, César R; Bowers, M Deane; Guralnick, Robert P

2012-01-01

Determining the magnitude of climate change patterns across elevational gradients is essential for an improved understanding of broader climate change patterns and for predicting hydrologic and ecosystem changes. We present temperature trends from five long-term weather stations along a 2077-meter elevational transect in the Rocky Mountain Front Range of Colorado, USA. These trends were measured over two time periods: a full 56-year record (1953-2008) and a shorter 20-year (1989-2008) record representing a period of widely reported accelerating change. The rate of change of biological indicators, season length and accumulated growing-degree days, were also measured over the 56 and 20-year records. Finally, we compared how well interpolated Parameter-elevation Regression on Independent Slopes Model (PRISM) datasets match the quality controlled and weather data from each station. Our results show that warming signals were strongest at mid-elevations over both temporal scales. Over the 56-year record, most sites show warming occurring largely through increases in maximum temperatures, while the 20-year record documents warming associated with increases in maximum temperatures at lower elevations and increases in minimum temperatures at higher elevations. Recent decades have also shown a shift from warming during springtime to warming in July and November. Warming along the gradient has contributed to increases in growing-degree days, although to differing degrees, over both temporal scales. However, the length of the growing season has remained unchanged. Finally, the actual and the PRISM interpolated yearly rates rarely showed strong correlations and suggest different warming and cooling trends at most sites. Interpretation of climate trends and their seasonal biases in the Rocky Mountain Front Range are dependent on both elevation and the temporal scale of analysis. Given mismatches between interpolated data and the directly measured station data, we caution against an over-reliance on interpolation methods for documenting local patterns of climatic change.

Elevation-Dependent Temperature Trends in the Rocky Mountain Front Range: Changes over a 56- and 20-Year Record

PubMed Central

McGuire, Chris R.; Nufio, César R.; Bowers, M. Deane; Guralnick, Robert P.

2012-01-01

Determining the magnitude of climate change patterns across elevational gradients is essential for an improved understanding of broader climate change patterns and for predicting hydrologic and ecosystem changes. We present temperature trends from five long-term weather stations along a 2077-meter elevational transect in the Rocky Mountain Front Range of Colorado, USA. These trends were measured over two time periods: a full 56-year record (1953–2008) and a shorter 20-year (1989–2008) record representing a period of widely reported accelerating change. The rate of change of biological indicators, season length and accumulated growing-degree days, were also measured over the 56 and 20-year records. Finally, we compared how well interpolated Parameter-elevation Regression on Independent Slopes Model (PRISM) datasets match the quality controlled and weather data from each station. Our results show that warming signals were strongest at mid-elevations over both temporal scales. Over the 56-year record, most sites show warming occurring largely through increases in maximum temperatures, while the 20-year record documents warming associated with increases in maximum temperatures at lower elevations and increases in minimum temperatures at higher elevations. Recent decades have also shown a shift from warming during springtime to warming in July and November. Warming along the gradient has contributed to increases in growing-degree days, although to differing degrees, over both temporal scales. However, the length of the growing season has remained unchanged. Finally, the actual and the PRISM interpolated yearly rates rarely showed strong correlations and suggest different warming and cooling trends at most sites. Interpretation of climate trends and their seasonal biases in the Rocky Mountain Front Range are dependent on both elevation and the temporal scale of analysis. Given mismatches between interpolated data and the directly measured station data, we caution against an over-reliance on interpolation methods for documenting local patterns of climatic change. PMID:22970205

The natural emergence of asymmetric tree-shaped pathways for cooling of a non-uniformly heated domain

NASA Astrophysics Data System (ADS)

Cetkin, Erdal; Oliani, Alessandro

2015-07-01

Here, we show that the peak temperature on a non-uniformly heated domain can be decreased by embedding a high-conductivity insert in it. The trunk of the high-conductivity insert is in contact with a heat sink. The heat is generated non-uniformly throughout the domain or concentrated in a square spot of length scale 0.1 L0, where L0 is the length scale of the non-uniformly heated domain. Peak and average temperatures are affected by the volume fraction of the high-conductivity material and by the shape of the high-conductivity pathways. This paper uncovers how varying the shape of the symmetric and asymmetric high-conductivity trees affects the overall thermal conductance of the heat generating domain. The tree-shaped high-conductivity inserts tend to grow toward where the heat generation is concentrated in order to minimize the peak temperature, i.e., in order to minimize the resistances to the heat flow. This behaviour of high-conductivity trees is alike with the root growth of the plants and trees. They also tend to grow towards sunlight, and their roots tend to grow towards water and nutrients. This paper uncovers the similarity between biological trees and high-conductivity trees, which is that trees should grow asymmetrically when the boundary conditions are non-uniform. We show here even though all the trees have the same objectives (minimum flow resistance), their shape should not be the same because of the variation in boundary conditions. To sum up, this paper shows that there is a high-conductivity tree design corresponding to minimum peak temperature with fixed constraints and conditions. This result is in accord with the constructal law which states that there should be an optimal design for a given set of conditions and constraints, and this design should be morphed in order to ensure minimum flow resistances as conditions and constraints change.

Fast, purely growing collisionless reconnection as an eigenfunction problem related to but not involving linear whistler waves

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bellan, Paul M.

If either finite electron inertia or finite resistivity is included in 2D magnetic reconnection, the two-fluid equations become a pair of second-order differential equations coupling the out-of-plane magnetic field and vector potential to each other to form a fourth-order system. The coupling at an X-point is such that out-of-plane even-parity electric and odd-parity magnetic fields feed off each other to produce instability if the scale length on which the equilibrium magnetic field changes is less than the ion skin depth. The instability growth rate is given by an eigenvalue of the fourth-order system determined by boundary and symmetry conditions. Themore » instability is a purely growing mode, not a wave, and has growth rate of the order of the whistler frequency. The spatial profile of both the out-of-plane electric and magnetic eigenfunctions consists of an inner concave region having extent of the order of the electron skin depth, an intermediate convex region having extent of the order of the equilibrium magnetic field scale length, and a concave outer exponentially decaying region. If finite electron inertia and resistivity are not included, the inner concave region does not exist and the coupled pair of equations reduces to a second-order differential equation having non-physical solutions at an X-point.« less

Measuring Lithium Dendritic Growth in Polymer Electrolytes

NASA Astrophysics Data System (ADS)

He, Yuping; Downing, Gregory; Wang, Howard

The nature of Li dendritic growth in polymeric electrolytes for rechargeable batteries has been investigated using simultaneous electrochemical and neutron depth profiling (NDP) measurements. A symmetric sandwich cell of Li / poly(ethyleneoxide) (PEO) : lithium bis(trifluoromethane)sulfonamide (LiTFSI) / Li was used as a model system in this study. Operating the cell at a constant electric current of 0.1 mA, in situ NDP measurements show that after a period of steady Li plating, dendrites start to grow, which eventually short-circuit the sandwich cell. 3D Li mapping reveals heterogeneous lateral distribution of Li over length scales from below a millimeter to centimeters. Most Li in the electrolyte layer resides in dendrites growing from the top electrode, it is observed that dendrites also grow from the bottom electrode, where presumably only Li oxidation reaction occurs. The revelation poses new design and engineering challenges in using Li metal electrode in future development of rechargeable batteries.

Fragmentation under the Scaling Symmetry and Turbulent Cascade with Intermittency

NASA Technical Reports Server (NTRS)

Gorokhovski, M.

2003-01-01

Fragmentation plays an important role in a variety of physical, chemical, and geological processes. Examples include atomization in sprays, crushing of rocks, explosion and impact of solids, polymer degradation, etc. Although each individual action of fragmentation is a complex process, the number of these elementary actions is large. It is natural to abstract a simple 'effective' scenario of fragmentation and to represent its essential features. One of the models is the fragmentation under the scaling symmetry: each breakup action reduces the typical length of fragments, r (right arrow) alpha r, by an independent random multiplier alpha (0 < alpha < 1), which is governed by the fragmentation intensity spectrum q(alpha), integral(sup 1)(sub 0) q(alpha)d alpha = 1. This scenario has been proposed by Kolmogorov (1941), when he considered the breakup of solid carbon particle. Describing the breakup as a random discrete process, Kolmogorov stated that at latest times, such a process leads to the log-normal distribution. In Gorokhovski & Saveliev, the fragmentation under the scaling symmetry has been reviewed as a continuous evolution process with new features established. The objective of this paper is twofold. First, the paper synthesizes and completes theoretical part of Gorokhovski & Saveliev. Second, the paper shows a new application of the fragmentation theory under the scale invariance. This application concerns the turbulent cascade with intermittency. We formulate here a model describing the evolution of the velocity increment distribution along the progressively decreasing length scale. The model shows that when the turbulent length scale gets smaller, the velocity increment distribution has central growing peak and develops stretched tails. The intermittency in turbulence is manifested in the same way: large fluctuations of velocity provoke highest strain in narrow (dissipative) regions of flow.

Organ size control via hydraulically gated oscillations.

PubMed

Ruiz-Herrero, Teresa; Alessandri, Kévin; Gurchenkov, Basile V; Nassoy, Pierre; Mahadevan, L

2017-12-01

Hollow vesicular tissues of various sizes and shapes arise in biological organs such as ears, guts, hearts, brains and even entire organisms. Regulating their size and shape is crucial for their function. Although chemical signaling has been thought to play a role in the regulation of cellular processes that feed into larger scales, it is increasingly recognized that mechanical forces are involved in the modulation of size and shape at larger length scales. Motivated by a variety of examples of tissue cyst formation and size control that show simultaneous growth and size oscillations, we create a minimal theoretical framework for the growth and dynamics of a soft, fluid-permeable, spherical shell. We show that these shells can relieve internal pressure by bursting intermittently, shrinking and re-growing, providing a simple mechanism by which hydraulically gated oscillations can regulate size. To test our theory, we develop an in vitro experimental set-up to monitor the growth and oscillations of a hollow tissue spheroid growing freely or when confined. A simple generalization of our theory to account for irreversible deformations allows us to explain the time scales and the amplitudes of oscillations in terms of the geometry and mechanical properties of the tissue shells. Taken together, our theory and experimental observations show how soft hydraulics can regulate the size of growing tissue shells. © 2017. Published by The Company of Biologists Ltd.

Deviations from uniform power law scaling in nonstationary time series

NASA Technical Reports Server (NTRS)

Viswanathan, G. M.; Peng, C. K.; Stanley, H. E.; Goldberger, A. L.

1997-01-01

A classic problem in physics is the analysis of highly nonstationary time series that typically exhibit long-range correlations. Here we test the hypothesis that the scaling properties of the dynamics of healthy physiological systems are more stable than those of pathological systems by studying beat-to-beat fluctuations in the human heart rate. We develop techniques based on the Fano factor and Allan factor functions, as well as on detrended fluctuation analysis, for quantifying deviations from uniform power-law scaling in nonstationary time series. By analyzing extremely long data sets of up to N = 10(5) beats for 11 healthy subjects, we find that the fluctuations in the heart rate scale approximately uniformly over several temporal orders of magnitude. By contrast, we find that in data sets of comparable length for 14 subjects with heart disease, the fluctuations grow erratically, indicating a loss of scaling stability.

Microfibres and macroscopic films from the coordination-driven hierarchical self-assembly of cylindrical micelles

PubMed Central

Lunn, David J.; Gould, Oliver E. C.; Whittell, George R.; Armstrong, Daniel P.; Mineart, Kenneth P.; Winnik, Mitchell A.; Spontak, Richard J.; Pringle, Paul G.; Manners, Ian

2016-01-01

Anisotropic nanoparticles prepared from block copolymers are of growing importance as building blocks for the creation of synthetic hierarchical materials. However, the assembly of these structural units is generally limited to the use of amphiphilic interactions. Here we report a simple, reversible coordination-driven hierarchical self-assembly strategy for the preparation of micron-scale fibres and macroscopic films based on monodisperse cylindrical block copolymer micelles. Coordination of Pd(0) metal centres to phosphine ligands immobilized within the soluble coronas of block copolymer micelles is found to induce intermicelle crosslinking, affording stable linear fibres comprised of micelle subunits in a staggered arrangement. The mean length of the fibres can be varied by altering the micelle concentration, reaction stoichiometry or aspect ratio of the micelle building blocks. Furthermore, the fibres aggregate on drying to form robust, self-supporting macroscopic micelle-based thin films with useful mechanical properties that are analogous to crosslinked polymer networks, but on a longer length scale. PMID:27538877

Ontogeny of Feeding Mechanics in Smoothhound Sharks: Morphology and Cartilage Stiffness.

PubMed

Wilga, Cheryl A D; Diniz, Stephanye E; Steele, Preston R; Sudario-Cook, Jordan; Dumont, Elizabeth R; Ferry, Lara A

2016-09-01

The diet of dusky smoothhound sharks, Mustelus canis, shifts over ontogeny from soft foods to a diet dominated by crabs. This may be accompanied by changes in the skeletal system that facilitates the capture and processing of large and bulky prey. The hyoid arch, for example, braces the jaws against the cranium, and generates suction for prey capture and intraoral transport. In this study, ontogenetic changes in the hyoid arch were investigated by quantifying size, mineralization, and stiffness to determine whether increasingly stiffer cartilages are associated with the dietary switch. Total length and length of the hyomandibula and ceratohyal cartilages over ontogeny were the proxy for body size. Cross-sectional area, percent mineralization, and second moment of area were quantified in 28 individuals spanning most of the natural size range. Mechanical compression tests were conducted to compare flexural stiffness to size. Our results show that the morphological characters tested for the hyomandibular and ceratohyal cartilages scales isometrically with length. While stiffness of the hyomandibular and ceratohyal cartilages scales isometrically with length when assessed on morphological characters alone (second moment of area), this relationship becomes allometric when mechanical properties are included (flexural stiffness). Thus, while the hyoid arch elements grow isometrically, the mechanical properties dictate a scaling relationship that dwarfs morphological characteristics. The various combinations of morphologies and ontogenetic trajectories of chondrichthyan species illustrate the tremendous flexibility that they possess in the functional organization of the feeding apparatus. © The Author 2016. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please email: journals.permissions@oup.com.

Critical Point in Self-Organized Tissue Growth

NASA Astrophysics Data System (ADS)

Aguilar-Hidalgo, Daniel; Werner, Steffen; Wartlick, Ortrud; González-Gaitán, Marcos; Friedrich, Benjamin M.; Jülicher, Frank

2018-05-01

We present a theory of pattern formation in growing domains inspired by biological examples of tissue development. Gradients of signaling molecules regulate growth, while growth changes these graded chemical patterns by dilution and advection. We identify a critical point of this feedback dynamics, which is characterized by spatially homogeneous growth and proportional scaling of patterns with tissue length. We apply this theory to the biological model system of the developing wing of the fruit fly Drosophila melanogaster and quantitatively identify signatures of the critical point.

Increases in Growing Season Length and Changes in Precipitation at Six Different Arctic and Subarctic Ecosystems from 1906-Present

NASA Astrophysics Data System (ADS)

Culler, L. E.; Finger, R.; Plane, E.; Ayres, M.; Virginia, R. A.

2015-12-01

Ecological dynamics across the Arctic are responding to rapid changes in climate. As a whole, the Arctic has warmed at approximately twice the rate of the rest of the world, but changes in temperature and precipitation experienced at regional and local scales are most important for coupled human-natural systems. In addition, biologically-relevant climate indices are necessary for quantifying ecological responses of terrestrial and aquatic systems to varying climate. We compared climatic changes at six different Arctic and sub-Arctic locations, including two in Greenland (Kangerlussuaq, Sisimiut), one in Sweden (Abisko), and three in Alaska (Barrow, Nome, Fairbanks). We amassed weather data (daily temperature and precipitation), dating as far back as 1906, from public-access databases and used these data to calculate indices such as length of growing season, growing season degree days (GDD), and growing season precipitation. Annual GDD increased at all locations (average of 13% increase in GDD since 1980), but especially in western Greenland (16 and 37% in Kangerlussuaq and Sisimiut, respectively). Changes in growing season precipitation were more variable, with only Barrow, AK and Abisko, Sweden experiencing increased precipitation. All other sites experienced stable or slightly declining precipitation. Increasing temperatures and relatively stable precipitation translates to increased evapotranspiration potential, which influences soil moisture, lake depth, vegetation, carbon emissions, and fire susceptibility. Understanding local and regional trends in temperature and precipitation can help explain observed phenological changes and other processes at population, community, and ecosystem levels. In addition, identification of locations most susceptible to future change will allow scientists to closely monitor their ecological dynamics, anticipate changes in coupled human-natural systems, and consider adaptation plans for the most rapidly changing systems.

Biodiversity promotes primary productivity and growing season lengthening at the landscape scale

PubMed Central

Niklaus, Pascal A.

2017-01-01

Experiments have shown positive biodiversity-ecosystem functioning (BEF) relationships in small plots with model communities established from species pools typically comprising few dozen species. Whether patterns found can be extrapolated to complex, nonexperimental, real-world landscapes that provide ecosystem services to humans remains unclear. Here, we combine species inventories from a large-scale network of 447 1-km2 plots with remotely sensed indices of primary productivity (years 2000–2015). We show that landscape-scale productivity and its temporal stability increase with the diversity of plants and other taxa. Effects of biodiversity indicators on productivity were comparable in size to effects of other important drivers related to climate, topography, and land cover. These effects occurred in plots that integrated different ecosystem types (i.e., metaecosystems) and were consistent over vast environmental and altitudinal gradients. The BEF relations we report are as strong or even exceed the ones found in small-scale experiments, despite different community assembly processes and a species pool comprising nearly 2,000 vascular plant species. Growing season length increased progressively over the observation period, and this shift was accelerated in more diverse plots, suggesting that a large species pool is important for adaption to climate change. Our study further implies that abiotic global-change drivers may mediate ecosystem functioning through biodiversity changes. PMID:28874547

Magnetohydrodynamic Turbulence in the Plasmoid-mediated Regime

NASA Astrophysics Data System (ADS)

Comisso, L.; Huang, Y.-M.; Lingam, M.; Hirvijoki, E.; Bhattacharjee, A.

2018-02-01

Magnetohydrodynamic turbulence and magnetic reconnection are ubiquitous in astrophysical environments. In most situations these processes do not occur in isolation but interact with each other. This renders a comprehensive theory of these processes highly challenging. Here we propose a theory of magnetohydrodynamic turbulence driven at a large scale that self-consistently accounts for the mutual interplay with magnetic reconnection occurring at smaller scales. Magnetic reconnection produces plasmoids (flux ropes) that grow from turbulence-generated noise and eventually disrupt the sheet-like structures in which they are born. The disruption of these structures leads to a modification of the turbulent energy cascade, which in turn exerts a feedback effect on the plasmoid formation via the turbulence-generated noise. The energy spectrum in this plasmoid-mediated range steepens relative to the standard inertial range and does not follow a simple power law. As a result of the complex interplay between turbulence and reconnection, we also find that the length scale that marks the beginning of the plasmoid-mediated range and the dissipation length scale do not obey true power laws. The transitional magnetic Reynolds number above which the plasmoid formation becomes statistically significant enough to affect the turbulent cascade is fairly modest, implying that plasmoids are expected to modify the turbulent path to dissipation in many astrophysical systems.

Magnetohydrodynamic Turbulence in the Plasmoid-mediated Regime

DOE Office of Scientific and Technical Information (OSTI.GOV)

Comisso, L.; Huang, Y. -M.; Lingam, M.

Magnetohydrodynamic turbulence and magnetic reconnection are ubiquitous in astrophysical environments. In most situations these processes do not occur in isolation but interact with each other. This renders a comprehensive theory of these processes highly challenging. Here we propose a theory of magnetohydrodynamic turbulence driven at a large scale that self-consistently accounts for the mutual interplay with magnetic reconnection occurring at smaller scales. Magnetic reconnection produces plasmoids (flux ropes) that grow from turbulence-generated noise and eventually disrupt the sheet-like structures in which they are born. The disruption of these structures leads to a modification of the turbulent energy cascade, which inmore » turn exerts a feedback effect on the plasmoid formation via the turbulence-generated noise. The energy spectrum in this plasmoid-mediated range steepens relative to the standard inertial range and does not follow a simple power law. As a result of the complex interplay between turbulence and reconnection, we also find that the length scale that marks the beginning of the plasmoid-mediated range and the dissipation length scale do not obey true power laws. The transitional magnetic Reynolds number above which the plasmoid formation becomes statistically significant enough to affect the turbulent cascade is fairly modest, implying that plasmoids are expected to modify the turbulent path to dissipation in many astrophysical systems« less

Magnetohydrodynamic Turbulence in the Plasmoid-mediated Regime

DOE PAGES

Comisso, L.; Huang, Y. -M.; Lingam, M.; ...

2018-02-16

Magnetohydrodynamic turbulence and magnetic reconnection are ubiquitous in astrophysical environments. In most situations these processes do not occur in isolation but interact with each other. This renders a comprehensive theory of these processes highly challenging. Here we propose a theory of magnetohydrodynamic turbulence driven at a large scale that self-consistently accounts for the mutual interplay with magnetic reconnection occurring at smaller scales. Magnetic reconnection produces plasmoids (flux ropes) that grow from turbulence-generated noise and eventually disrupt the sheet-like structures in which they are born. The disruption of these structures leads to a modification of the turbulent energy cascade, which inmore » turn exerts a feedback effect on the plasmoid formation via the turbulence-generated noise. The energy spectrum in this plasmoid-mediated range steepens relative to the standard inertial range and does not follow a simple power law. As a result of the complex interplay between turbulence and reconnection, we also find that the length scale that marks the beginning of the plasmoid-mediated range and the dissipation length scale do not obey true power laws. The transitional magnetic Reynolds number above which the plasmoid formation becomes statistically significant enough to affect the turbulent cascade is fairly modest, implying that plasmoids are expected to modify the turbulent path to dissipation in many astrophysical systems« less

Wrinkle motifs in thin films

PubMed Central

Budrikis, Zoe; Sellerio, Alessandro L.; Bertalan, Zsolt; Zapperi, Stefano

2015-01-01

On length scales from nanometres to metres, partial adhesion of thin films with substrates generates a fascinating variety of patterns, such as ‘telephone cord’ buckles, wrinkles, and labyrinth domains. Although these patterns are part of everyday experience and are important in industry, they are not completely understood. Here, we report simulation studies of a previously-overlooked phenomenon in which pairs of wrinkles form avoiding pairs, focusing on the case of graphene over patterned substrates. By nucleating and growing wrinkles in a controlled way, we characterize how their morphology is determined by stress fields in the sheet and friction with the substrate. Our simulations uncover the generic behaviour of avoiding wrinkle pairs that should be valid at all scales. PMID:25758174

Maintenance of carbohydrate transport in tall trees.

PubMed

Savage, Jessica A; Beecher, Sierra D; Clerx, Laura; Gersony, Jessica T; Knoblauch, Jan; Losada, Juan M; Jensen, Kaare H; Knoblauch, Michael; Holbrook, N Michele

2017-12-01

Trees present a critical challenge to long-distance transport because as a tree grows in height and the transport pathway increases in length, the hydraulic resistance of the vascular tissue should increase. This has led many to question whether trees can rely on a passive transport mechanism to move carbohydrates from their leaves to their roots. Although species that actively load sugars into their phloem, such as vines and herbs, can increase the driving force for transport as they elongate, it is possible that many trees cannot generate high turgor pressures because they do not use transporters to load sugar into the phloem. Here, we examine how trees can maintain efficient carbohydrate transport as they grow taller by analysing sieve tube anatomy, including sieve plate geometry, using recently developed preparation and imaging techniques, and by measuring the turgor pressures in the leaves of a tall tree in situ. Across nine deciduous species, we find that hydraulic resistance in the phloem scales inversely with plant height because of a shift in sieve element structure along the length of individual trees. This scaling relationship seems robust across multiple species despite large differences in plate anatomy. The importance of this scaling becomes clear when phloem transport is modelled using turgor pressures measured in the leaves of a mature red oak tree. These pressures are of sufficient magnitude to drive phloem transport only in concert with structural changes in the phloem that reduce transport resistance. As a result, the key to the long-standing mystery of how trees maintain phloem transport as they increase in size lies in the structure of the phloem and its ability to change hydraulic properties with plant height.

The small-scale dynamo: breaking universality at high Mach numbers

NASA Astrophysics Data System (ADS)

Schleicher, Dominik R. G.; Schober, Jennifer; Federrath, Christoph; Bovino, Stefano; Schmidt, Wolfram

2013-02-01

The small-scale dynamo plays a substantial role in magnetizing the Universe under a large range of conditions, including subsonic turbulence at low Mach numbers, highly supersonic turbulence at high Mach numbers and a large range of magnetic Prandtl numbers Pm, i.e. the ratio of kinetic viscosity to magnetic resistivity. Low Mach numbers may, in particular, lead to the well-known, incompressible Kolmogorov turbulence, while for high Mach numbers, we are in the highly compressible regime, thus close to Burgers turbulence. In this paper, we explore whether in this large range of conditions, universal behavior can be expected. Our starting point is previous investigations in the kinematic regime. Here, analytic studies based on the Kazantsev model have shown that the behavior of the dynamo depends significantly on Pm and the type of turbulence, and numerical simulations indicate a strong dependence of the growth rate on the Mach number of the flow. Once the magnetic field saturates on the current amplification scale, backreactions occur and the growth is shifted to the next-larger scale. We employ a Fokker-Planck model to calculate the magnetic field amplification during the nonlinear regime, and find a resulting power-law growth that depends on the type of turbulence invoked. For Kolmogorov turbulence, we confirm previous results suggesting a linear growth of magnetic energy. For more general turbulent spectra, where the turbulent velocity scales with the characteristic length scale as uℓ∝ℓϑ, we find that the magnetic energy grows as (t/Ted)2ϑ/(1-ϑ), with t being the time coordinate and Ted the eddy-turnover time on the forcing scale of turbulence. For Burgers turbulence, ϑ = 1/2, quadratic rather than linear growth may thus be expected, as the spectral energy increases from smaller to larger scales more rapidly. The quadratic growth is due to the initially smaller growth rates obtained for Burgers turbulence. Similarly, we show that the characteristic length scale of the magnetic field grows as t1/(1-ϑ) in the general case, implying t3/2 for Kolmogorov and t2 for Burgers turbulence. Overall, we find that high Mach numbers, as typically associated with steep spectra of turbulence, may break the previously postulated universality, and introduce a dependence on the environment also in the nonlinear regime.

Phenology Shifts at Start vs. End of Growing Season in Temperate Vegetation Over the Northern Hemisphere for the Period 1982-2008

NASA Technical Reports Server (NTRS)

Jeong, Su-Jong; Ho, Chang-Hoi; Gim, Hyeon-Ju; Brown, Molley E.

2011-01-01

Changes in vegetative growing seasons are dominant indicators of the dynamic response of ecosystems to climate change. Therefore, knowledge of growing seasons over the past decades is essential to predict ecosystem changes. In this study, the long-term changes in the growing seasons of temperate vegetation over the Northern Hemisphere were examined by analyzing satellite-measured normalized difference vegetation index and reanalysis temperature during 1982 2008. Results showed that the length of the growing season (LOS) increased over the analysis period; however, the role of changes at the start of the growing season (SOS) and at the end of the growing season (EOS) differed depending on the time period. On a hemispheric scale, SOS advanced by 5.2 days in the early period (1982-1999) but advanced by only 0.2 days in the later period (2000-2008). EOS was delayed by 4.3 days in the early period, and it was further delayed by another 2.3 days in the later period. The difference between SOS and EOS in the later period was due to less warming during the preseason (January-April) before SOS compared with the magnitude of warming in the preseason (June September) before EOS. At a regional scale, delayed EOS in later periods was shown. In North America, EOS was delayed by 8.1 days in the early period and delayed by another 1.3 days in the later period. In Europe, the delayed EOS by 8.2 days was more significant than the advanced SOS by 3.2 days in the later period. However, in East Asia, the overall increase in LOS during the early period was weakened in the later period. Admitting regional heterogeneity, changes in hemispheric features suggest that the longer-lasting vegetation growth in recent decades can be attributed to extended leaf senescence in autumn rather than earlier spring leaf-out. Keywords: climate change, growing season, NDVI (normalized difference vegetation index), Northern Hemisphere, phenology,

Young students, satellites aid understanding of climate-biosphere link

NASA Astrophysics Data System (ADS)

White, Michael A.; Schwartz, Mark D.; Running, Steven W.

Data collected by young students from kindergarten through high school are being combined with satellite data to develop a more consistent understanding of the intimate connection between climate dynamics and the terrestrial biosphere. Comparison of the two sets of data involving the onset of budburst among trees and other vegetation has been extremely encouraging.Surface-atmosphere interactions involving exchanges of carbon, water, and energy are strongly affected by interannual variability in the timing and length of the vegetation growing season, and satellite remote sensing has the unique ability to consistently monitor global spatiotemporal variability in growing season dynamics. But without a clear picture of how satellite information (Figure 1) relates to ground conditions, the application of satellite growing season estimates for monitoring of climate-vegetation interactions, calculation of energy budgets, and large-scale ecological modeling is extremely limited.The integrated phenological analysis of field data, satellite observations, and climate advocated by Schwartz [1998], for example, has been primarily limited by the lack of geographically extensive and consistently measured phenology databases.

Water-vapour variability within a convective boundary-layer assessed by large-eddy simulations and IHOP_2002 observations

NASA Astrophysics Data System (ADS)

Couvreux, F.; Guichard, F.; Redelsperger, J. L.; Kiemle, C.; Masson, V.; Lafore, J. P.; Flamant, C.

2005-10-01

This study presents a comprehensive analysis of the variability of water vapour in a growing convective boundary-layer (CBL) over land, highlighting the complex links between advection, convective activity and moisture heterogeneity in the boundary layer. A Large-eddy Simulation (LES) is designed, based on observations, and validated, using an independent data-set collected during the International H2O Project (IHOP 2002) fieldexperiment. Ample information about the moisture distribution in space and time, as well as other important CBL parameters are acquired by mesonet stations, balloon soundings, instruments on-board two aircraft and the DLR airborne water-vapour differential-absorption lidar. Because it can deliver two-dimensional cross-sections at high spatial resolution (140 m horizontal, 200 m vertical), the airborne lidar offers valuable insights of small-scale moisture-variability throughout the CBL. The LES is able to reproduce the development of the CBL in the morning and early afternoon, as assessed by comparisons of simulated mean profiles of key meteorological variables with sounding data. Simulated profiles of the variance of water-vapour mixing-ratio were found to be in good agreement with the lidar-derived counterparts. Finally, probability-density functions of potential temperature, vertical velocity and water-vapour mixing-ratio calculated from the LES show great consistency with those derived from aircraft in situ measurements in the middle of the CBL. Downdraughts entrained from above the CBL are governing the scale of moisture variability. Characteristic length-scales are found to be larger for water-vapour mixing-ratio than for temperature.The observed water-vapour variability exhibits contributions from different scales. The influence of the mesoscale (larger than LES domain size, i.e. 10 km) on the smaller-scale variability is assessed using LES and observations. The small-scale variability of water vapour is found to be important and to be driven by the dynamics of the CBL. Both lidar observations and LES evidence that dry downdraughts entrained from above the CBL are governing the scale of moisture variability. Characteristic length-scales are found to be larger for water-vapour mixing-ratio than for temperature and vertical velocity. In particular, intrusions of drier free-troposphere air from above the growing CBL impose a marked negative skewness on the water-vapour distribution within it, both as observed and in the simulation.

Animal Construction as a Free Boundary Problem: Evidence of Fractal Scaling Laws

NASA Astrophysics Data System (ADS)

Nicolis, S. C.

2014-12-01

We suggest that the main features of animal construction can be understood as the sum of locally independent actions of non-interacting individuals subjected to the global constraints imposed by the nascent structure. We first formulate an analytically tractable oscopic description of construction which predicts a 1/3 power law for how the length of the structure grows with time. We further show how the power law is modified when biases in random walk performed by the constructors as well as halting times between consecutive construction steps are included.

Statistical modelling for precision agriculture: A case study in optimal environmental schedules for Agaricus Bisporus production via variable domain functional regression.

PubMed

Panayi, Efstathios; Peters, Gareth W; Kyriakides, George

2017-01-01

Quantifying the effects of environmental factors over the duration of the growing process on Agaricus Bisporus (button mushroom) yields has been difficult, as common functional data analysis approaches require fixed length functional data. The data available from commercial growers, however, is of variable duration, due to commercial considerations. We employ a recently proposed regression technique termed Variable-Domain Functional Regression in order to be able to accommodate these irregular-length datasets. In this way, we are able to quantify the contribution of covariates such as temperature, humidity and water spraying volumes across the growing process, and for different lengths of growing processes. Our results indicate that optimal oxygen and temperature levels vary across the growing cycle and we propose environmental schedules for these covariates to optimise overall yields.

Statistical modelling for precision agriculture: A case study in optimal environmental schedules for Agaricus Bisporus production via variable domain functional regression

PubMed Central

Panayi, Efstathios; Kyriakides, George

2017-01-01

Quantifying the effects of environmental factors over the duration of the growing process on Agaricus Bisporus (button mushroom) yields has been difficult, as common functional data analysis approaches require fixed length functional data. The data available from commercial growers, however, is of variable duration, due to commercial considerations. We employ a recently proposed regression technique termed Variable-Domain Functional Regression in order to be able to accommodate these irregular-length datasets. In this way, we are able to quantify the contribution of covariates such as temperature, humidity and water spraying volumes across the growing process, and for different lengths of growing processes. Our results indicate that optimal oxygen and temperature levels vary across the growing cycle and we propose environmental schedules for these covariates to optimise overall yields. PMID:28961254

[Geographic variation of seed morphological traits of Picea schrenkiana var. tianschanica in Tianshan Mountains, Xinjiang of Northwest China].

PubMed

Liu, Gui-Feng; Zang, Run-Guo; Liu, Hua; Bai, Zhi-Qiang; Guo, Zhong-Jun; Ding, Yi

2012-06-01

Taking the Picea schrenkiana var. tianschanica forests at three sites with different longitudes (Zhaosu, Tianchi, and Qitai) in Tianshan Mountains as the objects, the cones were collected along an altitudinal gradient to analyze the variation of their seed morphological traits (seed scale length and width, seed scale length/width ratio, seed wing length and width, seed wing length/ width ratio, seed length and width, and seed length/width ratio). All the seed traits except seed width tended to decrease with increasing altitude. The seed traits except seed wing width, seed width, and seed length/width ratio all had significant negative correlations with altitude. Seed scale length and width and seed scale length/width ratio had significant positive correlations with longitude. Seed scale length, seed scale length/width ratio, and seed wing length/width ratio had significant negative correlations with slope degree. No significant correlations were observed between the seed traits except seed wing width and the slope aspect. Altitude was the main factor affecting the seed scale length, seed scale length/width ratio, and seed wing length/width ratio.

Fabrication of biomimetic nanomaterials and their effect on cell behavior

NASA Astrophysics Data System (ADS)

Porri, Teresa Jane

Cells in vivo respond to an intricate combination of chemical and mechanical signals. The corneal epithelium, a structure which prevents the admission of bacteria and undesirable molecules into the eye, grows on a basement membrane which presents both nanoscale topographic and adhesive chemical signals. An effective approach to biomaterials design takes advantage of the synergistic effects of the multiple cellular inputs which are available to engineer cell-substrate interactions. We have previously demonstrated the effects of nanoscale topography on a variety of corneal epithelial cell behaviors. To gain a better understanding of cell-level control in vivo, we employ a systems-level approach which looks at the effect of nanoscale topography in conjunction with a biomimetic surface chemistry. First, we discuss a novel method of fabricating nanoscale topography through templated electroless deposition of gold into PVP-coated polycarbonate membranes. This technique creates nanowires of gold with an uniform outer diameter that is dependent upon the size of the pores in the membrane used, and a nanowire length that is dependent upon the extent of etching into the polymer membrane. The gold nanowires can be modified with self-assembled monolayers (SAMs) of alkanethiols. Using these substrates, we study the effect of topographic length scale and surface chemistry on cells attached to a discontinuous nanoscale topography, and find a transition in cellular behavior at a length scale (between 600 and 2000 nm inter-wire spacing) that is commensurate with the transition length scale seen on surfaces presenting continuous grooves and ridges. Secondly, we study the effect of non-fouling peptide-modified SAMs on cellular behavior. We examine the effect of co-presented RGD and AG73 peptides and show that cell spreading is a function of the relative ratios of RGD and AG73 present on the surface. Finally, we explore the combinatorial effects of biologically relevant chemistry with anisotropic nanoscale topography with dimensions that vary from the micron to the nanoscale. We show that integrin binding, syndecan binding, and topographic length scale each independently influence epithelial cell response to nanoscale features, lending a high degree of control over cell morphologic responses.

Orbitals, Occupation Numbers, and Band Structure of Short One-Dimensional Cadmium Telluride Polymers.

PubMed

Valentine, Andrew J S; Talapin, Dmitri V; Mazziotti, David A

2017-04-27

Recent work found that soldering CdTe quantum dots together with a molecular CdTe polymer yielded field-effect transistors with much greater electron mobility than quantum dots alone. We present a computational study of the CdTe polymer using the active-space variational two-electron reduced density matrix (2-RDM) method. While analogous complete active-space self-consistent field (CASSCF) methods scale exponentially with the number of active orbitals, the active-space variational 2-RDM method exhibits polynomial scaling. A CASSCF calculation using the (48o,64e) active space studied in this paper requires 10 24 determinants and is therefore intractable, while the variational 2-RDM method in the same active space requires only 2.1 × 10 7 variables. Natural orbitals, natural-orbital occupations, charge gaps, and Mulliken charges are reported as a function of polymer length. The polymer, we find, is strongly correlated, despite possessing a simple sp 3 -hybridized bonding scheme. Calculations reveal the formation of a nearly saturated valence band as the polymer grows and a charge gap that decreases sharply with polymer length.

Polymer brushes in explicit poor solvents studied using a new variant of the bond fluctuation model

NASA Astrophysics Data System (ADS)

Jentzsch, Christoph; Sommer, Jens-Uwe

2014-09-01

Using a variant of the Bond Fluctuation Model which improves its parallel efficiency in particular running on graphic cards we perform large scale simulations of polymer brushes in poor explicit solvent. Grafting density, solvent quality, and chain length are varied. Different morphological structures in particular octopus micelles are observed for low grafting densities. We reconsider the theoretical model for octopus micelles proposed by Williams using scaling arguments with the relevant scaling variable being σ/σc, and with the characteristic grafting density given by σc ˜ N-4/3. We find that octopus micelles only grow laterally, but not in height and we propose an extension of the model by assuming a cylindrical shape instead of a spherical geometry for the micelle-core. We show that the scaling variable σ/σc can be applied to master plots for the averaged height of the brush, the size of the micelles, and the number of chains per micelle. The exponents in the corresponding power law relations for the grafting density and chain length are in agreement with the model for flat cylindrical micelles. We also investigate the surface roughness and find that polymer brushes in explicit poor solvent at grafting densities higher than the stretching transition are flat and surface rippling can only be observed close to the stretching transition.

Time and length scales within a fire and implications for numerical simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

TIESZEN,SHELDON R.

2000-02-02

A partial non-dimensionalization of the Navier-Stokes equations is used to obtain order of magnitude estimates of the rate-controlling transport processes in the reacting portion of a fire plume as a function of length scale. Over continuum length scales, buoyant times scales vary as the square root of the length scale; advection time scales vary as the length scale, and diffusion time scales vary as the square of the length scale. Due to the variation with length scale, each process is dominant over a given range. The relationship of buoyancy and baroclinc vorticity generation is highlighted. For numerical simulation, first principlesmore » solution for fire problems is not possible with foreseeable computational hardware in the near future. Filtered transport equations with subgrid modeling will be required as two to three decades of length scale are captured by solution of discretized conservation equations. By whatever filtering process one employs, one must have humble expectations for the accuracy obtainable by numerical simulation for practical fire problems that contain important multi-physics/multi-length-scale coupling with up to 10 orders of magnitude in length scale.« less

Simulation of electrostatic ion instabilities in the presence of parallel currents and transverse electric fields

NASA Technical Reports Server (NTRS)

Nishikawa, K.-I.; Ganguli, G.; Lee, Y. C.; Palmadesso, P. J.

1989-01-01

A spatially two-dimensional electrostatic PIC simulation code was used to study the stability of a plasma equilibrium characterized by a localized transverse dc electric field and a field-aligned drift for L is much less than Lx, where Lx is the simulation length in the x direction and L is the scale length associated with the dc electric field. It is found that the dc electric field and the field-aligned current can together play a synergistic role to enable the excitation of electrostatic waves even when the threshold values of the field aligned drift and the E x B drift are individually subcritical. The simulation results show that the growing ion waves are associated with small vortices in the linear stage, which evolve to the nonlinear stage dominated by larger vortices with lower frequencies.

A diminutive new species of cave-dwelling Wolf Snake (Colubridae: Lycodon Boie, 1826) from Peninsular Malaysia.

PubMed

Grismer, L Lee; Quah, Evan S H; Anuar M S, Shahrul; Muin, Mohd Abdul; Wood, Perry L; Nor, Siti Azizah Mohd

2014-06-12

A newly discovered, diminutive, cave-dwelling, lowland species of the colubrid snake genus Lycodon Boie is described from a limestone cave along the Thai-Malaysian border in the state of Perlis, northwestern Peninsular Malaysia. Lycodon cavernicolus sp. nov. is most closely related to L. butleri Boulenger, an endemic, upland, forest-dwelling species from Peninsular Malaysia of the fasciatus group but is separated from L. butleri and all other species of the L. fasciatus group and the closely related L. ruhstrati group by having the combination of 245 (male) and 232 (female) ventral scales; 113 (male) and 92 (female) paired, subcaudal scales; a single precloacal plate; nine or 10 supralabials; 10 or 11 infralabials; a maximum total length of 508 mm (female); a relative tail length of 0.25-0.27; an immaculate venter in juveniles and dark-brown, posterior, ventral scale margins in adults; and dorsal and caudal bands in juveniles white. The discovery of L. cavernicolus sp. nov. adds to a rapidly growing list of newly discovered reptiles from karst regions and limestone forests of Peninsular Malaysia, underscoring the fact that these areas should be studied before they are quarried as they harbor a significant portion of the Peninsular Malaysia's herpetological diversity.

Data-driven RANS for simulations of large wind farms

NASA Astrophysics Data System (ADS)

Iungo, G. V.; Viola, F.; Ciri, U.; Rotea, M. A.; Leonardi, S.

2015-06-01

In the wind energy industry there is a growing need for real-time predictions of wind turbine wake flows in order to optimize power plant control and inhibit detrimental wake interactions. To this aim, a data-driven RANS approach is proposed in order to achieve very low computational costs and adequate accuracy through the data assimilation procedure. The RANS simulations are implemented with a classical Boussinesq hypothesis and a mixing length turbulence closure model, which is calibrated through the available data. High-fidelity LES simulations of a utility-scale wind turbine operating with different tip speed ratios are used as database. It is shown that the mixing length model for the RANS simulations can be calibrated accurately through the Reynolds stress of the axial and radial velocity components, and the gradient of the axial velocity in the radial direction. It is found that the mixing length is roughly invariant in the very near wake, then it increases linearly with the downstream distance in the diffusive region. The variation rate of the mixing length in the downstream direction is proposed as a criterion to detect the transition between near wake and transition region of a wind turbine wake. Finally, RANS simulations were performed with the calibrated mixing length model, and a good agreement with the LES simulations is observed.

On Instability of Geostrophic Current with Linear Vertical Shear at Length Scales of Interleaving

NASA Astrophysics Data System (ADS)

Kuzmina, N. P.; Skorokhodov, S. L.; Zhurbas, N. V.; Lyzhkov, D. A.

2018-01-01

The instability of long-wave disturbances of a geostrophic current with linear velocity shear is studied with allowance for the diffusion of buoyancy. A detailed derivation of the model problem in dimensionless variables is presented, which is used for analyzing the dynamics of disturbances in a vertically bounded layer and for describing the formation of large-scale intrusions in the Arctic basin. The problem is solved numerically based on a high-precision method developed for solving fourth-order differential equations. It is established that there is an eigenvalue in the spectrum of eigenvalues that corresponds to unstable (growing with time) disturbances, which are characterized by a phase velocity exceeding the maximum velocity of the geostrophic flow. A discussion is presented to explain some features of the instability.

Large scale spontaneous synchronization of cell cycles in amoebae

NASA Astrophysics Data System (ADS)

Segota, Igor; Boulet, Laurent; Franck, Carl

2014-03-01

Unicellular eukaryotic amoebae Dictyostelium discoideum are generally believed to grow in their vegetative state as single cells until starvation, when their collective aspect emerges and they differentiate to form a multicellular slime mold. While major efforts continue to be aimed at their starvation-induced social aspect, our understanding of population dynamics and cell cycle in the vegetative growth phase has remained incomplete. We show that substrate-growtn cell populations spontaneously synchronize their cell cycles within several hours. These collective population-wide cell cycle oscillations span millimeter length scales and can be completely suppressed by washing away putative cell-secreted signals, implying signaling by means of a diffusible growth factor or mitogen. These observations give strong evidence for collective proliferation behavior in the vegetative state and provide opportunities for synchronization theories beyond classic Kuramoto models.

Spontaneous emergence of large-scale cell cycle synchronization in amoeba colonies

NASA Astrophysics Data System (ADS)

Segota, Igor; Boulet, Laurent; Franck, David; Franck, Carl

2014-06-01

Unicellular eukaryotic amoebae Dictyostelium discoideum are generally believed to grow in their vegetative state as single cells until starvation, when their collective aspect emerges and they differentiate to form a multicellular slime mold. While major efforts continue to be aimed at their starvation-induced social aspect, our understanding of population dynamics and cell cycle in the vegetative growth phase has remained incomplete. Here we show that cell populations grown on a substrate spontaneously synchronize their cell cycles within several hours. These collective population-wide cell cycle oscillations span millimeter length scales and can be completely suppressed by washing away putative cell-secreted signals, implying signaling by means of a diffusible growth factor or mitogen. These observations give strong evidence for collective proliferation behavior in the vegetative state.

Change in Length of Growing Season by State, 1895-2015

EPA Pesticide Factsheets

This map shows the total change in length of the growing season, time of first fall frost and time of last spring frost from 1895 to 2015 for each of the contiguous 48 states. Data were provided by Dr. Kenneth Kunkel of NOAA's Cooperative Institute for Climate and Satellites. For more information: www.epa.gov/climatechange/science/indicators

Preface to special topic: Selected articles from phononics 2013: The second international conference on phononic crystals/metamaterials, phonon transport and optomechanics, 2-7 June 2013, Sharm El-Sheikh, Egypt

DOE PAGES

Hussein, Mahmoud I.; El-Kady, Ihab; Li, Baowen; ...

2014-12-31

“Phononics” is an interdisciplinary branch of physics and engineering that deals with the behavior of phonons, and more broadly elastic and acoustic waves in similar context, and their manipulation in solids and/or fluids to benefit technological applications. Compared to resembling disciplines, such as electronics and photonics, phononics is a youthful field. It is growing at a remarkable rate, especially when viewed liberally with no limiting constraints on any particular length scale, discipline or application.

Preface to special topic: Selected articles from phononics 2013: The second international conference on phononic crystals/metamaterials, phonon transport and optomechanics, 2-7 June 2013, Sharm El-Sheikh, Egypt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hussein, Mahmoud I.; El-Kady, Ihab; Li, Baowen

“Phononics” is an interdisciplinary branch of physics and engineering that deals with the behavior of phonons, and more broadly elastic and acoustic waves in similar context, and their manipulation in solids and/or fluids to benefit technological applications. Compared to resembling disciplines, such as electronics and photonics, phononics is a youthful field. It is growing at a remarkable rate, especially when viewed liberally with no limiting constraints on any particular length scale, discipline or application.

Targeted Recovery as an Effective Strategy against Epidemic Spreading.

PubMed

Böttcher, L; Andrade, J S; Herrmann, H J

2017-10-30

We propose a targeted intervention protocol where recovery is restricted to individuals that have the least number of infected neighbours. Our recovery strategy is highly efficient on any kind of network, since epidemic outbreaks are minimal when compared to the baseline scenario of spontaneous recovery. In the case of spatially embedded networks, we find that an epidemic stays strongly spatially confined with a characteristic length scale undergoing a random walk. We demonstrate numerically and analytically that this dynamics leads to an epidemic spot with a flat surface structure and a radius that grows linearly with the spreading rate.

Aging in the three-dimensional random-field Ising model

NASA Astrophysics Data System (ADS)

von Ohr, Sebastian; Manssen, Markus; Hartmann, Alexander K.

2017-07-01

We studied the nonequilibrium aging behavior of the random-field Ising model in three dimensions for various values of the disorder strength. This allowed us to investigate how the aging behavior changes across the ferromagnetic-paramagnetic phase transition. We investigated a large system size of N =2563 spins and up to 108 Monte Carlo sweeps. To reach these necessary long simulation times, we employed an implementation running on Intel Xeon Phi coprocessors, reaching single-spin-flip times as short as 6 ps. We measured typical correlation functions in space and time to extract a growing length scale and corresponding exponents.

Evolution of IPv6 Internet topology with unusual sudden changes

NASA Astrophysics Data System (ADS)

Ai, Jun; Zhao, Hai; Kathleen, M. Carley; Su, Zhan; Li, Hui

2013-07-01

The evolution of Internet topology is not always smooth but sometimes with unusual sudden changes. Consequently, identifying patterns of unusual topology evolution is critical for Internet topology modeling and simulation. We analyze IPv6 Internet topology evolution in IP-level graph to demonstrate how it changes in uncommon ways to restructure the Internet. After evaluating the changes of average degree, average path length, and some other metrics over time, we find that in the case of a large-scale growing the Internet becomes more robust; whereas in a top—bottom connection enhancement the Internet maintains its efficiency with links largely decreased.

Scaling relations for a functionally two-dimensional plant: Chamaesyce setiloba (Euphorbiaceae).

PubMed

Koontz, Terri L; Petroff, Alexander; West, Geoffrey B; Brown, James H

2009-05-01

Many characteristics of plants and animals scale with body size as described by allometric equations of the form Y = βM(α), where Y is an attribute of the organism, β is a coefficient that varies with attribute, M is a measure of organism size, and α is another constant, the scaling exponent. In current models, the frequently observed quarter-power scaling exponents are hypothesized to be due to fractal-like structures. However, not all plants or animals conform to the assumptions of these models. Therefore, they might be expected to have different scaling relations. We studied one such plant, Chamaesyce setiloba, a prostrate annual herb that grows to functionally fill a two-dimensional space. Number of leaves scaled slightly less than isometrically with total aboveground plant mass (α ≈ 0.9) and substantially less than isometrically with dry total stem mass (α = 0.82), showing reduced allocation to leaf as opposed to stem tissue with increasing plant size. Additionally, scalings of the lengths and radii of parent and daughter branches differed from those predicted for three-dimensional trees and shrubs. Unlike plants with typical three-dimensional architectures, C. setiloba has distinctive scaling relations associated with its particular prostrate herbaceous growth form.

Wind loads and competition for light sculpt trees into self-similar structures.

PubMed

Eloy, Christophe; Fournier, Meriem; Lacointe, André; Moulia, Bruno

2017-10-18

Trees are self-similar structures: their branch lengths and diameters vary allometrically within the tree architecture, with longer and thicker branches near the ground. These tree allometries are often attributed to optimisation of hydraulic sap transport and safety against elastic buckling. Here, we show that these allometries also emerge from a model that includes competition for light, wind biomechanics and no hydraulics. We have developed MECHATREE, a numerical model of trees growing and evolving on a virtual island. With this model, we identify the fittest growth strategy when trees compete for light and allocate their photosynthates to grow seeds, create new branches or reinforce existing ones in response to wind-induced loads. Strikingly, we find that selected trees species are self-similar and follow allometric scalings similar to those observed on dicots and conifers. This result suggests that resistance to wind and competition for light play an essential role in determining tree allometries.

Thermal-capillary analysis of small-scale floating zones Steady-state calculations

NASA Technical Reports Server (NTRS)

Duranceau, J. L.; Brown, R. A.

1986-01-01

Galerkin finite element analysis of a thermal-capillary model of the floating zone crystal growth process is used to predict the dependence of molten zone shape on operating conditions for the growth of small silicon boules. The model accounts for conduction-dominated heat transport in the melt, feed rod and growing crystal and for radiation between these phases, the ambient and a heater. Surface tension acting on the shape of the melt/gas meniscus counteracts gravity to set the shape of the molten zone. The maximum diameter of the growing crystal is set by the dewetting of the melt from the feed rod when the crystal radius is large. Calculations with small Bond number show the increased zone lengths possible for growth in a microgravity environment. The sensitivity of the method to the shape and intensity of the applied heating distribution is demonstrated. The calculations are compared with experimental observations.

Theory and simulation of buoyancy-driven convection around growing protein crystals in microgravity.

PubMed

Carotenuto, L; Cartwright, J H E; Castagnolo, D; Garcia Ruiz, J M; Otalora, F

2002-01-01

We present an order-of-magnitude analysis of the Navier-Stokes equations in a time-dependent, incompressible and Boussinesq formulation. The hypothesis employed of two different length scales allows one to determine the different flow regimes on the basis of the geometrical and thermodynamical parameters alone, without solving the Navier-Stokes equations. The order-of-magnitude analysis is then applied to the field of protein crystallization, and to the flow field around a crystal, where the driving forces are solutal buoyancy-driven convection, from density dependence on species concentration, and sedimentation caused by the different densities of the crystal and the protein solution. The main result of this paper is to provide predictions of the conditions in which a crystal is growing in a convective regime, rather than in the ideal diffusive state, even under the typical microgravity conditions of space platforms.

Urban heat island-induced increases in evapotranspirative demand

NASA Astrophysics Data System (ADS)

Zipper, Samuel C.; Schatz, Jason; Kucharik, Christopher J.; Loheide, Steven P.

2017-01-01

Although the importance of vegetation in mitigating the urban heat island (UHI) is known, the impacts of UHI-induced changes in micrometeorological conditions on vegetation are not well understood. Here we show that plant water requirements are significantly higher in urban areas compared to rural areas surrounding Madison, WI, driven by increased air temperature with minimal effects of decreased air moisture content. Local increases in impervious cover are strongly associated with increased evapotranspirative demand in a consistent manner across years, with most increases caused by elevated temperatures during the growing season rather than changes in changes in growing season length. Potential evapotranspiration is up to 10% higher due to the UHI, potentially mitigating changes to the water and energy balances caused by urbanization. Our results indicate that local-scale land cover decisions (increases in impervious cover) can significantly impact evapotranspirative demand, with likely implications for water and carbon cycling in urban ecosystems.

Black hole formation in a contracting universe

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quintin, Jerome; Brandenberger, Robert H., E-mail: jquintin@physics.mcgill.ca, E-mail: rhb@hep.physics.mcgill.ca

We study the evolution of cosmological perturbations in a contracting universe. We aim to determine under which conditions density perturbations grow to form large inhomogeneities and collapse into black holes. Our method consists in solving the cosmological perturbation equations in complete generality for a hydrodynamical fluid. We then describe the evolution of the fluctuations over the different length scales of interest and as a function of the equation of state for the fluid, and we explore two different types of initial conditions: quantum vacuum and thermal fluctuations. We also derive a general requirement for black hole collapse on sub-Hubble scales,more » and we use the Press-Schechter formalism to describe the black hole formation probability. For a fluid with a small sound speed (e.g., dust), we find that both quantum and thermal initial fluctuations grow in a contracting universe, and the largest inhomogeneities that first collapse into black holes are of Hubble size and the collapse occurs well before reaching the Planck scale. For a radiation-dominated fluid, we find that no black hole can form before reaching the Planck scale. In the context of matter bounce cosmology, it thus appears that only models in which a radiation-dominated era begins early in the cosmological evolution are robust against the formation of black holes. Yet, the formation of black holes might be an interesting feature for other models. We comment on a number of possible alternative early universe scenarios that could take advantage of this feature.« less

Interannual Variations in Global Vegetation Phenology Derived from a Long Term AVHRR and MODIS Data Record

NASA Astrophysics Data System (ADS)

Zhang, X.; Friedl, M. A.; Yu, Y.

2013-12-01

Land surface phenology metrics are widely retrieved from satellite observations at regional and global scales, and have been shown to be valuable for monitoring terrestrial ecosystem dynamics in response to extreme climate events and predicting biological responses to future climate scenarios. While the response of spring vegetation greenup to climate warming at mid-to-high latitudes is well-documented, understanding of diverse phenological responses to climate change over entire growing cycles and at broad geographic scales is incomplete. Many studies assume that the timing of individual phenological indicators in responses to climate forcing is independent of phenological events that occur at other times during the growing season. In this paper we use a different strategy. Specifically, we hypothesize that integrating sequences of key phenological indicators across growing seasons provides a more effective way to capture long-term variation in phenology in response to climate change. To explore this hypothesis we use global land surface phenology metrics derived from the Version 3 Long Term Vegetation Index Products from Multiple Satellite Data Records data set to examine interannual variations and trends in global land surface phenology from 1982-2010. Using daily enhanced vegetation index (EVI) data at a spatial resolution of 0.05 degrees, we model the phenological trajectory for each individual pixel using piecewise logistic models. The modeled trajectories were then used to detect phenological indicators including the onset of greenness increase, the onset of greenness maximum, the onset of greenness decrease, the onset of greenness minimum, and the growing season length, among others at global scale. The quality of land surface phenology detection for individual pixels was calculated based on metrics that characterize the EVI quality and model fits in annual time series at each pixel. Phenological indicators characterized as having good quality were then used to detect interannual variation and long-term trends using linear and nonlinear trend analysis techniques.

A global sensitivity analysis of crop virtual water content

NASA Astrophysics Data System (ADS)

Tamea, S.; Tuninetti, M.; D'Odorico, P.; Laio, F.; Ridolfi, L.

2015-12-01

The concepts of virtual water and water footprint are becoming widely used in the scientific literature and they are proving their usefulness in a number of multidisciplinary contexts. With such growing interest a measure of data reliability (and uncertainty) is becoming pressing but, as of today, assessments of data sensitivity to model parameters, performed at the global scale, are not known. This contribution aims at filling this gap. Starting point of this study is the evaluation of the green and blue virtual water content (VWC) of four staple crops (i.e. wheat, rice, maize, and soybean) at a global high resolution scale. In each grid cell, the crop VWC is given by the ratio between the total crop evapotranspiration over the growing season and the crop actual yield, where evapotranspiration is determined with a detailed daily soil water balance and actual yield is estimated using country-based data, adjusted to account for spatial variability. The model provides estimates of the VWC at a 5x5 arc minutes and it improves on previous works by using the newest available data and including multi-cropping practices in the evaluation. The model is then used as the basis for a sensitivity analysis, in order to evaluate the role of model parameters in affecting the VWC and to understand how uncertainties in input data propagate and impact the VWC accounting. In each cell, small changes are exerted to one parameter at a time, and a sensitivity index is determined as the ratio between the relative change of VWC and the relative change of the input parameter with respect to its reference value. At the global scale, VWC is found to be most sensitive to the planting date, with a positive (direct) or negative (inverse) sensitivity index depending on the typical season of crop planting date. VWC is also markedly dependent on the length of the growing period, with an increase in length always producing an increase of VWC, but with higher spatial variability for rice than for other crops. The sensitivity to the reference evapotranspiration is highly variable with the considered crop and ranges from positive values (for soybean), to negative values (for rice and maize) and near-zero values for wheat. This variability reflects the different yield response factors of crops, which expresses their tolerance to water stress.

[Dynamic changes in vegetation NDVI from 1982 to 2012 and its responses to climate change and human activities in Xinjiang, China].

PubMed

Du, Jia-qiang; Jiaerheng, Ahati; Zhao, Chenxi; Fang, Guang-ling; Yin, Jun-qi; Xiang, Bao; Yuan, Xin-jie; Fang, Shi-feng

2015-12-01

Vegetation plays an important role in regulating the terrestrial carbon balance and the climate system, and also overwhelmingly dominates the provisioning of ecosystem services. Therefore, it has significance to monitor the growth of vegetation. Based on AVHRR GIMMS NDVI and MODIS NDVI datasets, we analyzed the spatiotemporal patterns of change in NDVI and their linkage with climate change and human activity from 1982 to 2012 in the typical arid region, Xinjiang of northwestern China, at pixel and regional scales. At regional scale, although a statistically significant positive trend of growing season NDVI with a rate of 4.09 x 10⁻⁴· a⁻¹ was found during 1982-2012, there were two distinct periods with opposite trends in growing season NDVI before and after 1998, respectively. NDVI in growing season first significantly increased with a rate of 10 x 10⁻⁴· a⁻¹ from 1982 to 1998, and then decreased with a rate of -3 x 10⁻⁴· a⁻¹ from 1998 to 2012. The change in trend of NDVI from increase to decrease mainly occurred in summer, followed by autumn, and the reversal wasn't observed in spring. At pixel scale, the NDVI in farmland significantly increased; the NDVI changes in the growing season and all seasons showed polarization: Areas with significant change mostly increased in size as the NDVI record grown in length. The rate of increase in size of areas with significantly decreasing NDVI was larger than that with significantly increasing NDVI, which led to the NDVI increase obviously slowing down or stopping at regional scale. The vegetation growth in the study area was regulated by both climate change and human activity. Temperature was the most important driving factor in spring and autumn, whereas precipitation in summer. Extensive use of fertilizers and increased farmland irrigated area promoted the vegetation growth. However, the rapid increase in the proportion of cotton cultivation and use of drip irrigation might reduce spring NDVI in the part of farmlands, and the increase in stocking levels of livestock might lead to a decrease in NDVI in some grasslands.

"Ideal" tearing and the transition to fast reconnection in the weakly collisional MHD and EMHD regimes

NASA Astrophysics Data System (ADS)

Del Sarto, Daniele; Pucci, Fulvia; Tenerani, Anna; Velli, Marco

2016-03-01

This paper discusses the transition to fast growth of the tearing instability in thin current sheets in the collisionless limit where electron inertia drives the reconnection process. It has been previously suggested that in resistive MHD there is a natural maximum aspect ratio (ratio of sheet length and breadth to thickness) which may be reached for current sheets with a macroscopic length L, the limit being provided by the fact that the tearing mode growth time becomes of the same order as the Alfvén time calculated on the macroscopic scale. For current sheets with a smaller aspect ratio than critical the normalized growth rate tends to zero with increasing Lundquist number S, while for current sheets with an aspect ratio greater than critical the growth rate diverges with S. Here we carry out a similar analysis but with electron inertia as the term violating magnetic flux conservation: previously found scalings of critical current sheet aspect ratios with the Lundquist number are generalized to include the dependence on the ratio de2/L2, where de is the electron skin depth, and it is shown that there are limiting scalings which, as in the resistive case, result in reconnecting modes growing on ideal time scales. Finite Larmor radius effects are then included, and the rescaling argument at the basis of "ideal" reconnection is proposed to explain secondary fast reconnection regimes naturally appearing in numerical simulations of current sheet evolution.

Fine-scale modeling of bristlecone pine treeline position in the Great Basin, USA

NASA Astrophysics Data System (ADS)

Bruening, Jamis M.; Tran, Tyler J.; Bunn, Andrew G.; Weiss, Stuart B.; Salzer, Matthew W.

2017-01-01

Great Basin bristlecone pine (Pinus longaeva) and foxtail pine (Pinus balfouriana) are valuable paleoclimate resources due to their longevity and climatic sensitivity of their annually-resolved rings. Treeline research has shown that growing season temperatures limit tree growth at and just below the upper treeline. In the Great Basin, the presence of precisely dated remnant wood above modern treeline shows that the treeline ecotone shifts at centennial timescales tracking long-term changes in climate; in some areas during the Holocene climatic optimum treeline was 100 meters higher than at present. Regional treeline position models built exclusively from climate data may identify characteristics specific to Great Basin treelines and inform future physiological studies, providing a measure of climate sensitivity specific to bristlecone and foxtail pine treelines. This study implements a topoclimatic analysis—using topographic variables to explain patterns in surface temperatures across diverse mountainous terrain—to model the treeline position of three semi-arid bristlecone and/or foxtail pine treelines in the Great Basin as a function of growing season length and mean temperature calculated from in situ measurements. Results indicate: (1) the treeline sites used in this study are similar to other treelines globally, and require a growing season length of between 147-153 days and average temperature ranging from 5.5°C-7.2°C, (2) site-specific treeline position models may be improved through topoclimatic analysis and (3) treeline position in the Great Basin is likely out of equilibrium with the current climate, indicating a possible future upslope shift in treeline position.

Correlation between the ripple phase and stripe domains in membranes.

PubMed

Bernchou, Uffe; Midtiby, Henrik; Ipsen, John Hjort; Simonsen, Adam Cohen

2011-12-01

We investigate the relationship between stripe domains and the ripple phase in membranes. These have previously been observed separately without being linked explicitly. Past results have demonstrated that solid and ripple phases exhibit rich textural patterns related to the orientational order of tilted lipids and the orientation of ripple corrugations. Here we reveal a highly complex network pattern of ripple and solid domains in DLPC, DPPC bilayers with structures covering length scales from 10 nm to 100 μm. Using spincoated double supported membranes we investigate domains by correlated AFM and fluorescence microscopy. Cooling experiments demonstrate the mode of nucleation and growth of stripe domains enriched in the fluorescent probe. Concurrent AFM imaging reveals that these stripe domains have a one-to-one correspondence with a rippled morphology running parallel to the stripe direction. Both thin and thick stripe domains are observed having ripple periods of 13.5±0.2 nm and 27.4±0.6 nm respectively. These are equivalent to previously observed asymmetric/equilibrium and symmetric/metastable ripple phases, respectively. Thin stripes grow from small solid domains and grow predominantly in length with a speed of ~3 times that of the thick stripes. Thick stripes grow by templating on the sides of thinner stripes or can emerge directly from the fluid phase. Bending and branching angles of stripes are in accordance with an underlying six fold lattice. We discuss mechanisms for the nucleation and growth of ripples and discuss a generic phase diagram that may partly rationalize the coexistence of metastable and stable phases. Copyright © 2011 Elsevier B.V. All rights reserved.

Scale-free Graphs for General Aviation Flight Schedules

NASA Technical Reports Server (NTRS)

Alexandov, Natalia M. (Technical Monitor); Kincaid, Rex K.

2003-01-01

In the late 1990s a number of researchers noticed that networks in biology, sociology, and telecommunications exhibited similar characteristics unlike standard random networks. In particular, they found that the cummulative degree distributions of these graphs followed a power law rather than a binomial distribution and that their clustering coefficients tended to a nonzero constant as the number of nodes, n, became large rather than O(1/n). Moreover, these networks shared an important property with traditional random graphs as n becomes large the average shortest path length scales with log n. This latter property has been coined the small-world property. When taken together these three properties small-world, power law, and constant clustering coefficient describe what are now most commonly referred to as scale-free networks. Since 1997 at least six books and over 400 articles have been written about scale-free networks. In this manuscript an overview of the salient characteristics of scale-free networks. Computational experience will be provided for two mechanisms that grow (dynamic) scale-free graphs. Additional computational experience will be given for constructing (static) scale-free graphs via a tabu search optimization approach. Finally, a discussion of potential applications to general aviation networks is given.

Sub-structure formation in starless cores

NASA Astrophysics Data System (ADS)

Toci, C.; Galli, D.; Verdini, A.; Del Zanna, L.; Landi, S.

2018-02-01

Motivated by recent observational searches of sub-structure in starless molecular cloud cores, we investigate the evolution of density perturbations on scales smaller than the Jeans length embedded in contracting isothermal clouds, adopting the same formalism developed for the expanding Universe and the solar wind. We find that initially small amplitude, Jeans-stable perturbations (propagating as sound waves in the absence of a magnetic field) are amplified adiabatically during the contraction, approximately conserving the wave action density, until they either become non-linear and steepen into shocks at a time tnl, or become gravitationally unstable when the Jeans length decreases below the scale of the perturbations at a time tgr. We evaluate analytically the time tnl at which the perturbations enter the non-linear stage using a Burgers' equation approach, and we verify numerically that this time marks the beginning of the phase of rapid dissipation of the kinetic energy of the perturbations. We then show that for typical values of the rms Mach number in molecular cloud cores, tnl is smaller than tgr, and therefore density perturbations likely dissipate before becoming gravitational unstable. Solenoidal modes grow at a faster rate than compressible modes, and may eventually promote fragmentation through the formation of vortical structures.

Multi Scale Modeling of Continuous Aramid Fiber Reinforced Polymer Matrix Composites Used in Ballistic Protection Applications

DTIC Science & Technology

2014-11-16

related to identification of the type and the extent of data generated at a finer length scale to the adjacent coarser length scale, as well as seamless ...data generated at a finer length scale to the adjacent coarser length scale, as well as seamless integration of different length scales into a unified...composite laminate consisting of 32 laminae and impacted (at a 0° obliquity angle and an incident velocity of 500 m/s) by a 0.30 caliber steel

Variability of interconnected wind plants: correlation length and its dependence on variability time scale

NASA Astrophysics Data System (ADS)

St. Martin, Clara M.; Lundquist, Julie K.; Handschy, Mark A.

2015-04-01

The variability in wind-generated electricity complicates the integration of this electricity into the electrical grid. This challenge steepens as the percentage of renewably-generated electricity on the grid grows, but variability can be reduced by exploiting geographic diversity: correlations between wind farms decrease as the separation between wind farms increases. But how far is far enough to reduce variability? Grid management requires balancing production on various timescales, and so consideration of correlations reflective of those timescales can guide the appropriate spatial scales of geographic diversity grid integration. To answer ‘how far is far enough,’ we investigate the universal behavior of geographic diversity by exploring wind-speed correlations using three extensive datasets spanning continents, durations and time resolution. First, one year of five-minute wind power generation data from 29 wind farms span 1270 km across Southeastern Australia (Australian Energy Market Operator). Second, 45 years of hourly 10 m wind-speeds from 117 stations span 5000 km across Canada (National Climate Data Archive of Environment Canada). Finally, four years of five-minute wind-speeds from 14 meteorological towers span 350 km of the Northwestern US (Bonneville Power Administration). After removing diurnal cycles and seasonal trends from all datasets, we investigate dependence of correlation length on time scale by digitally high-pass filtering the data on 0.25-2000 h timescales and calculating correlations between sites for each high-pass filter cut-off. Correlations fall to zero with increasing station separation distance, but the characteristic correlation length varies with the high-pass filter applied: the higher the cut-off frequency, the smaller the station separation required to achieve de-correlation. Remarkable similarities between these three datasets reveal behavior that, if universal, could be particularly useful for grid management. For high-pass filter time constants shorter than about τ = 38 h, all datasets exhibit a correlation length ξ that falls at least as fast as {{τ }-1} . Since the inter-site separation needed for statistical independence falls for shorter time scales, higher-rate fluctuations can be effectively smoothed by aggregating wind plants over areas smaller than otherwise estimated.

Two-dimensional energy spectra in a high Reynolds number turbulent boundary layer

NASA Astrophysics Data System (ADS)

Chandran, Dileep; Baidya, Rio; Monty, Jason; Marusic, Ivan

2016-11-01

The current study measures the two-dimensional (2D) spectra of streamwise velocity component (u) in a high Reynolds number turbulent boundary layer for the first time. A 2D spectra shows the contribution of streamwise (λx) and spanwise (λy) length scales to the streamwise variance at a given wall height (z). 2D spectra could be a better tool to analyse spectral scaling laws as it is devoid of energy aliasing errors that could be present in one-dimensional spectra. A novel method is used to calculate the 2D spectra from the 2D correlation of u which is obtained by measuring velocity time series at various spanwise locations using hot-wire anemometry. At low Reynolds number, the shape of the 2D spectra at a constant energy level shows λy √{ zλx } behaviour at larger scales which is in agreement with the literature. However, at high Reynolds number, it is observed that the square-root relationship gradually transforms into a linear relationship (λy λx) which could be caused by the large packets of eddies whose length grows proportionately to the growth of its width. Additionally, we will show that this linear relationship observed at high Reynolds number is consistent with attached eddy predictions. The authors gratefully acknowledge the support from the Australian Research Council.

Finite-size scaling above the upper critical dimension in Ising models with long-range interactions

NASA Astrophysics Data System (ADS)

Flores-Sola, Emilio J.; Berche, Bertrand; Kenna, Ralph; Weigel, Martin

2015-01-01

The correlation length plays a pivotal role in finite-size scaling and hyperscaling at continuous phase transitions. Below the upper critical dimension, where the correlation length is proportional to the system length, both finite-size scaling and hyperscaling take conventional forms. Above the upper critical dimension these forms break down and a new scaling scenario appears. Here we investigate this scaling behaviour by simulating one-dimensional Ising ferromagnets with long-range interactions. We show that the correlation length scales as a non-trivial power of the linear system size and investigate the scaling forms. For interactions of sufficiently long range, the disparity between the correlation length and the system length can be made arbitrarily large, while maintaining the new scaling scenarios. We also investigate the behavior of the correlation function above the upper critical dimension and the modifications imposed by the new scaling scenario onto the associated Fisher relation.

A flux footprint analysis to understand ecosystem fluxes in an intensively managed landscape

NASA Astrophysics Data System (ADS)

Hernandez Rodriguez, L. C.; Goodwell, A. E.; Kumar, P.

2017-12-01

Flux tower studies in agricultural sites have mainly been done at plot scale, where the footprint of the instruments is small such that the data reveals the behaviour of the nearby crop on which the study is focused. In the Midwestern United States, the agricultural ecosystem and its associated drainage, evapotranspiration, and nutrient dynamics are dominant influences on interactions between the soil, land, and atmosphere. In this study, we address large-scale ecohydrologic fluxes and states in an intensively managed landscape based on data from a 25m high eddy covariance flux tower. We show the calculated upwind distance and flux footprint for a flux tower located in Central Illinois as part of the Intensively Managed Landscapes Critical Zone Observatory (IMLCZO). In addition, we calculate the daily energy balance during the summer of 2016 from the flux tower measurements and compare with the modelled energy balance from a representative corn crop located in the flux tower footprint using the Multi-Layer Canopy model, MLCan. The changes in flux footprint over the course of hours, days, and the growing season have significant implications for the measured fluxes of carbon and energy at the flux tower. We use MLCan to simulate these fluxes under land covers of corn and soybeans. Our results demonstrate how the instrument heights impact the footprint of the captured eddy covariance fluxes, and we explore the implication for hydrological analysis. The convective turbulent atmosphere during the daytime shows a wide footprint of more than 10 km2, which reaches 3km length for the 90% contribution, where buoyancy is the dominant mechanism driving turbulence. In contrast, the stable atmosphere during the night-time shows a narrower footprint that goes beyond 8km2 and grows in the direction of the prevalent wind, which exceeds 4 km in length. This study improves our understanding of agricultural ecosystem behaviour in terms of the magnitude and variability of fluxes and states that characterize the large-scale system structure. In this case, the 25m instrument height enables us to record environmental behaviour on a larger system-scale rather than plot-scale. The measurement height, roughness and thermal stability are relevant to understand the complex situations that may exist when the footprint area is not homogeneous.

Projected changes in Malawi's growing season

NASA Astrophysics Data System (ADS)

Vizy, Edward K.; Cook, Kerry H.; Chimphamba, James; McCusker, Brent

2015-09-01

Regional climate model projections at 30-km resolution are used to predict future mid-century and late-century growing season changes over Malawi due to global warming under the Representative Concentration Pathway 8.5 business-as-usual emissions forcing scenario. Three different methods for estimating growing season characteristics are applied and evaluated. All three methods yield reasonable growing season length, onset, and demise date estimates over Malawi given the wide range of uncertainty of the observations. The projections indicate the likelihood for a shorter growing season in the future over Malawi south of 13.5°S. At mid-century the growing season length is predicted to be 20-40 % (20-55 days) shorter over the southernmost districts and 5-20 % (5-30 days) shorter over the central districts. By late-century the length is predicted to be 25-55 % (20-70 days) shorter with significant differences extending into northern Malawi. The shorter growing season is primarily associated with an earlier demise date, as no significant change in the onset date is predicted. Analysis of the regional circulation and horizontal moisture flux transport indicates that the earlier demise is associated with an intensification of the thermal low over the Kalahari Desert to the south and west of Malawi and an expansion of the mid-tropospheric Kalahari anticyclone over southern Africa. The stronger thermal low/anticyclone enhances the moisture flux divergence over Malawi suppressing the convective activity at the end of the wet season.

Physics of Colloids in Space (PCS): Microgravity Experiment Completed Operations on the International Space Station

NASA Technical Reports Server (NTRS)

Doherty, Michael P.; Sankaran, Subramanian

2003-01-01

Immediately after mixing, the two-phase-like colloid-polymer critical point sample begins to phase separate, or de-mix, into two phases-one that resembles a gas and one that resembles a liquid, except that the particles are colloids and not atoms. The colloid-poor black regions (colloidal gas) grow bigger, and the colloid-rich white regions (colloidal liquid) become whiter as the domains further coarsen. Finally, complete phase separation is achieved, that is, just one region of each colloid-rich (white) and colloid-poor (black) phase. This process was studied over four decades of length scale, from 1 micrometer to 1 centimeter.

Phase diagram and critical end point for strongly interacting quarks.

PubMed

Qin, Si-xue; Chang, Lei; Chen, Huan; Liu, Yu-xin; Roberts, Craig D

2011-04-29

We introduce a method based on chiral susceptibility, which enables one to draw a phase diagram in the chemical-potential-temperature plane for strongly interacting quarks whose interactions are described by any reasonable gap equation, even if the diagrammatic content of the quark-gluon vertex is unknown. We locate a critical end point at (μ(E),T(E))∼(1.0,0.9)T(c), where T(c) is the critical temperature for chiral-symmetry restoration at μ=0, and find that a domain of phase coexistence opens at the critical end point whose area increases as a confinement length scale grows.

Temperature and geographic attribution of change in the Taraxacum mongolicum growing season from 1990 to 2009 in eastern China's temperate zone.

PubMed

Chen, Xiaoqiu; Tian, Youhua; Xu, Lin

2015-10-01

Using leaf unfolding and leaf coloration data of a widely distributed herbaceous species, Taraxacum mongolicum, we detected linear trend and temperature response of the growing season at 52 stations from 1990 to 2009. Across the research region, the mean growing season beginning date marginal significantly advanced at a rate of -2.1 days per decade, while the mean growing season end date was significantly delayed at a rate of 3.1 days per decade. The mean growing season length was significantly prolonged at a rate of 5.1 days per decade. Over the 52 stations, linear trends of the beginning date correlate negatively with linear trends of spring temperature, whereas linear trends of the end date and length correlate positively with linear trends of autumn temperature and annual mean temperature. Moreover, the growing season linear trends are also closely related to the growing season responses to temperature and geographic coordinates plus elevation. Regarding growing season responses to temperature, a 1 °C increase in regional mean spring temperature results in an advancement of 2.1 days in regional mean growing season beginning date, and a 1 °C increase in regional mean autumn temperature causes a delay of 2.3 days in regional mean growing season end date. A 1 °C increase in regional annual mean temperature induces an extension of 8.7 days in regional mean growing season length. Over the 52 stations, response of the beginning date to spring temperature depends mainly on local annual mean temperature and geographic coordinates plus elevation. Namely, a 1 °C increase in spring temperature induces a larger advancement of the beginning date at warmer locations with lower latitudes and further west longitudes than at colder locations with higher latitudes and further east longitudes, while a 1 °C increase in spring temperature causes a larger advancement of the beginning date at higher than at lower elevations.

Temperature and geographic attribution of change in the Taraxacum mongolicum growing season from 1990 to 2009 in eastern China's temperate zone

NASA Astrophysics Data System (ADS)

Chen, Xiaoqiu; Tian, Youhua; Xu, Lin

2015-10-01

Using leaf unfolding and leaf coloration data of a widely distributed herbaceous species, Taraxacum mongolicum, we detected linear trend and temperature response of the growing season at 52 stations from 1990 to 2009. Across the research region, the mean growing season beginning date marginal significantly advanced at a rate of -2.1 days per decade, while the mean growing season end date was significantly delayed at a rate of 3.1 days per decade. The mean growing season length was significantly prolonged at a rate of 5.1 days per decade. Over the 52 stations, linear trends of the beginning date correlate negatively with linear trends of spring temperature, whereas linear trends of the end date and length correlate positively with linear trends of autumn temperature and annual mean temperature. Moreover, the growing season linear trends are also closely related to the growing season responses to temperature and geographic coordinates plus elevation. Regarding growing season responses to temperature, a 1 °C increase in regional mean spring temperature results in an advancement of 2.1 days in regional mean growing season beginning date, and a 1 °C increase in regional mean autumn temperature causes a delay of 2.3 days in regional mean growing season end date. A 1 °C increase in regional annual mean temperature induces an extension of 8.7 days in regional mean growing season length. Over the 52 stations, response of the beginning date to spring temperature depends mainly on local annual mean temperature and geographic coordinates plus elevation. Namely, a 1 °C increase in spring temperature induces a larger advancement of the beginning date at warmer locations with lower latitudes and further west longitudes than at colder locations with higher latitudes and further east longitudes, while a 1 °C increase in spring temperature causes a larger advancement of the beginning date at higher than at lower elevations.

Length scale effects and multiscale modeling of thermally induced phase transformation kinetics in NiTi SMA

NASA Astrophysics Data System (ADS)

Frantziskonis, George N.; Gur, Sourav

2017-06-01

Thermally induced phase transformation in NiTi shape memory alloys (SMAs) shows strong size and shape, collectively termed length scale effects, at the nano to micrometer scales, and that has important implications for the design and use of devices and structures at such scales. This paper, based on a recently developed multiscale model that utilizes molecular dynamics (MDs) simulations at small scales and MD-verified phase field (PhF) simulations at larger scales, reports results on specific length scale effects, i.e. length scale effects in martensite phase fraction (MPF) evolution, transformation temperatures (martensite and austenite start and finish) and in the thermally cyclic transformation between austenitic and martensitic phase. The multiscale study identifies saturation points for length scale effects and studies, for the first time, the length scale effect on the kinetics (i.e. developed internal strains) in the B19‧ phase during phase transformation. The major part of the work addresses small scale single crystals in specific orientations. However, the multiscale method is used in a unique and novel way to indirectly study length scale and grain size effects on evolution kinetics in polycrystalline NiTi, and to compare the simulation results to experiments. The interplay of the grain size and the length scale effect on the thermally induced MPF evolution is also shown in this present study. Finally, the multiscale coupling results are employed to improve phenomenological material models for NiTi SMA.

Structure and dynamics of hyaluronic acid semidilute solutions: a dielectric spectroscopy study.

PubMed

Vuletić, T; Dolanski Babić, S; Ivek, T; Grgicin, D; Tomić, S; Podgornik, R

2010-07-01

Dielectric spectroscopy is used to investigate fundamental length scales describing the structure of hyaluronic acid sodium salt (Na-HA) semidilute aqueous solutions. In salt-free regime, the length scale of the relaxation mode detected in MHz range scales with HA concentration as c(HA)(-0.5) and corresponds to the de Gennes-Pfeuty-Dobrynin correlation length of polyelectrolytes in semidilute solution. The same scaling was observed for the case of long, genomic DNA. Conversely, the length scale of the mode detected in kilohertz range also varies with HA concentration as c(HA)(-0.5) which differs from the case of DNA (c(DNA)(-0.25)). The observed behavior suggests that the relaxation in the kilohertz range reveals the de Gennes-Dobrynin renormalized Debye screening length, and not the average size of the chain, as the pertinent length scale. Similarly, with increasing added salt the electrostatic contribution to the HA persistence length is observed to scale as the Debye length, contrary to scaling pertinent to the Odijk-Skolnick-Fixman electrostatic persistence length observed in the case of DNA. We argue that the observed features of the kilohertz range relaxation are due to much weaker electrostatic interactions that lead to the absence of Manning condensation as well as a rather high flexibility of HA as compared to DNA.

Use of timesat to estimate phenological parameters in Northwestern Patagonia

NASA Astrophysics Data System (ADS)

Oddi, Facundo; Minotti, Priscilla; Ghermandi, Luciana; Lasaponara, Rosa

2015-04-01

Under a global change context, ecosystems are receiving high pressure and the ecology science play a key role for monitoring and assessment of natural resources. To achieve an effective resources management to develop an ecosystem functioning knowledge based on spatio-temporal perspective is useful. Satellite imagery periodically capture the spectral response of the earth and remote sensing have been widely utilized as classification and change detection tool making possible evaluate the intra and inter-annual plant dynamics. Vegetation spectral indices (e.g., NDVI) are particularly suitable to study spatio-temporal processes related to plant phenology and remote sensing specific software, such as TIMESAT, has been developed to carry out time series analysis of spectral indexes. We used TIMESAT software applied to series of 25 years of NDVI bi-monthly composites (240 images covering the period 1982-2006) from the NOAA-AVHRR sensor (8 x 8 km) to assessment plant pheonology over 900000 ha of shrubby-grasslands in the Northwestern of Patagonia, Argentina. The study area corresponds to a Mediterranean environment and is part of a gradient defined by a sharp drop west-east in the precipitation regime (600 mm to 280 mm). We fitted the temporal series of NDVI data to double logistic functions by least-squares methods evaluating three seasonality parameters: a) start of growing season, b) growing season length, c) NDVI seasonal integral. According to fitted models by TIMESAT, start average of growing season was the second half of September (± 10 days) with beginnings latest in the east (dryer areas). The average growing season length was 180 days (± 15 days) without a clear spatial trend. The NDVI seasonal integral showed a clear trend of decrease in west-east direction following the precipitation gradient. The temporal and spatial information allows revealing important patterns of ecological interest, which can be of great importance to environmental monitoring. In this work we also show as utilizing TIMESAT to characterize the plant phenology at regional scale.

Numerical simulations of the convective flame in white dwarfs

NASA Technical Reports Server (NTRS)

Livne, Eli

1993-01-01

A first step toward better understanding of the mechanism driving convective flames in exploding white dwarfs is presented. The propagation of the convective flame is examined using a two-dimensional implicit hydrodynamical code. The large scales of the instability are captured by the grid while the scales that are smaller than the grid resolution are approximated by a mixing-length approximation. It is found that largescale perturbations (of order of the pressure scale height) do grow significantly during the expansion, leading to a very nonspherical burning front. The combustion rate is strongly enhanced (compared to the unperturbed case) during the first second, but later the expansion of the star suppresses the flame speed, leading to only partial incineration of the nuclear fuel. Our results imply that large-scale perturbations by themselves are not enough to explain the mechanism by which convective flames are driven, and a study of the whole spectrum of relevant perturbations is needed. The implications of these preliminary results on future simulations, in the context of current models for Type Ia supernovae, are discussed.

Ecosystem function in complex mountain terrain: Combining models and long-term observations to advance process-based understanding

NASA Astrophysics Data System (ADS)

Wieder, William R.; Knowles, John F.; Blanken, Peter D.; Swenson, Sean C.; Suding, Katharine N.

2017-04-01

Abiotic factors structure plant community composition and ecosystem function across many different spatial scales. Often, such variation is considered at regional or global scales, but here we ask whether ecosystem-scale simulations can be used to better understand landscape-level variation that might be particularly important in complex terrain, such as high-elevation mountains. We performed ecosystem-scale simulations by using the Community Land Model (CLM) version 4.5 to better understand how the increased length of growing seasons may impact carbon, water, and energy fluxes in an alpine tundra landscape. The model was forced with meteorological data and validated with observations from the Niwot Ridge Long Term Ecological Research Program site. Our results demonstrate that CLM is capable of reproducing the observed carbon, water, and energy fluxes for discrete vegetation patches across this heterogeneous ecosystem. We subsequently accelerated snowmelt and increased spring and summer air temperatures in order to simulate potential effects of climate change in this region. We found that vegetation communities that were characterized by different snow accumulation dynamics showed divergent biogeochemical responses to a longer growing season. Contrary to expectations, wet meadow ecosystems showed the strongest decreases in plant productivity under extended summer scenarios because of disruptions in hydrologic connectivity. These findings illustrate how Earth system models such as CLM can be used to generate testable hypotheses about the shifting nature of energy, water, and nutrient limitations across space and through time in heterogeneous landscapes; these hypotheses may ultimately guide further experimental work and model development.

Ecotypic differences in the phenology of the tundra species Eriophorum vaginatum reflect sites of origin.

PubMed

Parker, Thomas C; Tang, Jianwu; Clark, Mahalia B; Moody, Michael M; Fetcher, Ned

2017-11-01

Eriophorum vaginatum is a tussock-forming sedge that contributes significantly to the structure and primary productivity of moist acidic tussock tundra. Locally adapted populations (ecotypes) have been identified across the geographical distribution of E. vaginatum ; however, little is known about how their growth and phenology differ over the course of a growing season. The growing season is short in the Arctic and therefore exerts a strong selection pressure on tundra species. This raises the hypothesis that the phenology of arctic species may be poorly adapted if the timing and length of the growing season change. Mature E. vaginatum tussocks from across a latitudinal gradient (65-70°N) were transplanted into a common garden at a central location (Toolik Lake, 68°38'N, 149°36'W) where half were warmed using open-top chambers. Over two growing seasons (2015 and 2016), leaf length was measured weekly to track growth rates, timing of senescence, and biomass accumulation. Growth rates were similar across ecotypes and between years and were not affected by warming. However, southern populations accumulated significantly more biomass, largely because they started to senesce later. In 2016, peak biomass and senescence of most populations occurred later than in 2015, probably induced by colder weather at the beginning of the growing season in 2016, which caused a delayed start to growth. The finish was delayed as well. Differences in phenology between populations were largely retained between years, suggesting that the amount of time that these ecotypes grow has been selected by the length of the growing seasons at their respective home sites. As potential growing seasons lengthen, E. vaginatum may be unable to respond appropriately as a result of genetic control and may have reduced fitness in the rapidly warming Arctic tundra.

Characterization of spray-induced turbulence using fluorescence PIV

NASA Astrophysics Data System (ADS)

van der Voort, Dennis D.; Dam, Nico J.; Clercx, Herman J. H.; Water, Willem van de

2018-07-01

The strong shear induced by the injection of liquid sprays at high velocities induces turbulence in the surrounding medium. This, in turn, influences the motion of droplets as well as the mixing of air and vapor. Using fluorescence-based tracer particle image velocimetry, the velocity field surrounding 125-135 m/s sprays exiting a 200-μm nozzle is analyzed. For the first time, the small- and large-scale turbulence characteristics of the gas phase surrounding a spray has been measured simultaneously, using a large eddy model to determine the sub-grid scales. This further allows the calculation of the Stokes numbers of droplets, which indicates the influence of turbulence on their motion. The measurements lead to an estimate of the dissipation rate ɛ ≈ 35 m2 s^{-3}, a microscale Reynolds number Re_{λ } ≈ 170, and a Kolmogorov length scale of η ≈ 10^{-4} m. Using these dissipation rates to convert a droplet size distribution to a distribution of Stokes numbers, we show that only the large scale motion of turbulence disperses the droplet in the current case, but the small scales will grow in importance with increasing levels of atomization and ambient pressures.

Convergence of terrestrial plant production across global climate gradients.

PubMed

Michaletz, Sean T; Cheng, Dongliang; Kerkhoff, Andrew J; Enquist, Brian J

2014-08-07

Variation in terrestrial net primary production (NPP) with climate is thought to originate from a direct influence of temperature and precipitation on plant metabolism. However, variation in NPP may also result from an indirect influence of climate by means of plant age, stand biomass, growing season length and local adaptation. To identify the relative importance of direct and indirect climate effects, we extend metabolic scaling theory to link hypothesized climate influences with NPP, and assess hypothesized relationships using a global compilation of ecosystem woody plant biomass and production data. Notably, age and biomass explained most of the variation in production whereas temperature and precipitation explained almost none, suggesting that climate indirectly (not directly) influences production. Furthermore, our theory shows that variation in NPP is characterized by a common scaling relationship, suggesting that global change models can incorporate the mechanisms governing this relationship to improve predictions of future ecosystem function.

Role of medium heterogeneity and viscosity contrast in miscible flow regimes and mixing zone growth: A computational pore-scale approach

NASA Astrophysics Data System (ADS)

Afshari, Saied; Hejazi, S. Hossein; Kantzas, Apostolos

2018-05-01

Miscible displacement of fluids in porous media is often characterized by the scaling of the mixing zone length with displacement time. Depending on the viscosity contrast of fluids, the scaling law varies between the square root relationship, a sign for dispersive transport regime during stable displacement, and the linear relationship, which represents the viscous fingering regime during an unstable displacement. The presence of heterogeneities in a porous medium significantly affects the scaling behavior of the mixing length as it interacts with the viscosity contrast to control the mixing of fluids in the pore space. In this study, the dynamics of the flow and transport during both unit and adverse viscosity ratio miscible displacements are investigated in heterogeneous packings of circular grains using pore-scale numerical simulations. The pore-scale heterogeneity level is characterized by the variations of the grain diameter and velocity field. The growth of mixing length is employed to identify the nature of the miscible transport regime at different viscosity ratios and heterogeneity levels. It is shown that as the viscosity ratio increases to higher adverse values, the scaling law of mixing length gradually shifts from dispersive to fingering nature up to a certain viscosity ratio and remains almost the same afterwards. In heterogeneous media, the mixing length scaling law is observed to be generally governed by the variations of the velocity field rather than the grain size. Furthermore, the normalization of mixing length temporal plots with respect to the governing parameters of viscosity ratio, heterogeneity, medium length, and medium aspect ratio is performed. The results indicate that mixing length scales exponentially with log-viscosity ratio and grain size standard deviation while the impact of aspect ratio is insignificant. For stable flows, mixing length scales with the square root of medium length, whereas it changes linearly with length during unstable flows. This scaling procedure allows us to describe the temporal variation of mixing length using a generalized curve for various combinations of the flow conditions and porous medium properties.

Length-scale dependent mechanical properties of Al-Cu eutectic alloy: Molecular dynamics based model and its experimental verification

NASA Astrophysics Data System (ADS)

Tiwary, C. S.; Chakraborty, S.; Mahapatra, D. R.; Chattopadhyay, K.

2014-05-01

This paper attempts to gain an understanding of the effect of lamellar length scale on the mechanical properties of two-phase metal-intermetallic eutectic structure. We first develop a molecular dynamics model for the in-situ grown eutectic interface followed by a model of deformation of Al-Al2Cu lamellar eutectic. Leveraging the insights obtained from the simulation on the behaviour of dislocations at different length scales of the eutectic, we present and explain the experimental results on Al-Al2Cu eutectic with various different lamellar spacing. The physics behind the mechanism is further quantified with help of atomic level energy model for different length scale as well as different strain. An atomic level energy partitioning of the lamellae and the interface regions reveals that the energy of the lamellae core are accumulated more due to dislocations irrespective of the length-scale. Whereas the energy of the interface is accumulated more due to dislocations when the length-scale is smaller, but the trend is reversed when the length-scale is large beyond a critical size of about 80 nm.

Quantum mechanical expansion of variance of a particle in a weakly non-uniform electric and magnetic field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chan, Poh Kam; Kosaka, Wataru; Oikawa, Shun-ichi

We have solved the Heisenberg equation of motion for the time evolution of the position and momentum operators for a non-relativistic spinless charged particle in the presence of a weakly non-uniform electric and magnetic field. It is shown that the drift velocity operator obtained in this study agrees with the classical counterpart, and that, using the time dependent operators, the variances in position and momentum grow with time. The expansion rate of variance in position and momentum are dependent on the magnetic gradient scale length, however, independent of the electric gradient scale length. In the presence of a weakly non-uniformmore » electric and magnetic field, the theoretical expansion rates of variance expansion are in good agreement with the numerical analysis. It is analytically shown that the variance in position reaches the square of the interparticle separation, which is the characteristic time much shorter than the proton collision time of plasma fusion. After this time, the wavefunctions of the neighboring particles would overlap, as a result, the conventional classical analysis may lose its validity. The broad distribution of individual particle in space means that their Coulomb interactions with other particles become weaker than that expected in classical mechanics.« less

Evidences for Skeletal Structures in the Ocean from the Images Analyzed by Multilevel Dynamical Contrasting Method

NASA Astrophysics Data System (ADS)

Rantsev-Kartinov, Valentin A.

2004-11-01

An analysis of databases of photographic images of ocean's surface, taken from various altitudes and for various types of rough ocean surface, revealed the presence of an ocean's skeletal structures (OSS) = http://www.arxiv.org/ftp/physics/papers/0401/0401139.pdf [1] Rantsev-Kartinov V.A., Preprint, which exhibit a tendency toward self-similarity of structuring at various length scales (i.e., within various ``generations''). The topology of the OSS appears to be identical to that of skeletal structures which have been formerly found in a wide range of length scales, media and for various phenomena (Phys. Lett. A, 2002, 306). The typical OSS consists of separate identical blocks which are linked together to form a network. Two types of such blocks are found: (i) a coaxial tubular (CT) structures with internal radial bonds, and (ii) a cartwheel-like structures, located either on an axle or in the edges of the CT blocks. The OSSs differ from the formerly found SSs only by the fact that OSS, in their interior, are filled in with closely packed OSSs of a smaller size. We specially discuss the phenomenon of skeletal blocks in the form of vertically/horizontally oriented floating cylinders. The size of these observed blocks is shown to grow with increasing rough water.

Mesoscopic Length Scale Controls the Rheology of Dense Suspensions

NASA Astrophysics Data System (ADS)

Bonnoit, Claire; Lanuza, Jose; Lindner, Anke; Clement, Eric

2010-09-01

From the flow properties of dense granular suspensions on an inclined plane, we identify a mesoscopic length scale strongly increasing with volume fraction. When the flowing layer height is larger than this length scale, a diverging Newtonian viscosity is determined. However, when the flowing layer height drops below this scale, we evidence a nonlocal effective viscosity, decreasing as a power law of the flow height. We establish a scaling relation between this mesoscopic length scale and the suspension viscosity. These results support recent theoretical and numerical results implying collective and clustered granular motion when the jamming point is approached from below.

Mesoscopic length scale controls the rheology of dense suspensions.

PubMed

Bonnoit, Claire; Lanuza, Jose; Lindner, Anke; Clement, Eric

2010-09-03

From the flow properties of dense granular suspensions on an inclined plane, we identify a mesoscopic length scale strongly increasing with volume fraction. When the flowing layer height is larger than this length scale, a diverging Newtonian viscosity is determined. However, when the flowing layer height drops below this scale, we evidence a nonlocal effective viscosity, decreasing as a power law of the flow height. We establish a scaling relation between this mesoscopic length scale and the suspension viscosity. These results support recent theoretical and numerical results implying collective and clustered granular motion when the jamming point is approached from below.

Quasi-Continuum Reduction of Field Theories: A Route to Seamlessly Bridge Quantum and Atomistic Length-Scales with Continuum

DTIC Science & Technology

2016-04-01

AFRL-AFOSR-VA-TR-2016-0145 Quasi-continuum reduction of field theories: A route to seamlessly bridge quantum and atomistic length-scales with...field theories: A route to seamlessly bridge quantum and atomistic length-scales with continuum Principal Investigator: Vikram Gavini Department of...calculations on tens of thousands of atoms, and enable continuing efforts towards a seamless bridging of the quantum and continuum length-scales

Trait-specific responses of Scots pine to irrigation on a short vs long time scale.

PubMed

Feichtinger, Linda M; Eilmann, Britta; Buchmann, Nina; Rigling, Andreas

2015-02-01

In xeric environments, an increase in drought is related to reduced forest productivity and to enhanced mortality. However, predictions of future forest development remain difficult as the mechanisms underlying the responses of mature trees to long-term variations in water availability are not well understood. Here, we aimed to compare the adjustments in radial growth and morphological needle and shoot traits of mature Scots pine (Pinus sylvestris L.) growing along open water channels with those of control trees growing under naturally dry conditions at three sites in Valais, an inner-Alpine dry valley of Switzerland. The trees growing along two channels had been irrigated since germination (>70 years), whereas those along another previously drained channel had been irrigated only from 2010 to 2012, when the channel was re-established, and could thus be used to quantify the short-term effects of re-irrigation. Linear mixed models revealed that needle and shoot lengths as well as early- and late-wood basal area increments (BAIs) were most responsive to short-term and long-term irrigation. However, the magnitude of the response to the short-term irrigation exceeded that of the long-term irrigation. An extreme drought during the first half of 2011 led to an immediate decrease in the needle length, needle width, and early- and late-wood BAIs of the control trees, whereas the shoot length and needle numbers of control trees reacted with a 1-year delay to the extreme drought, as the shoots were responding to water availability of previous year's summer. Such negative responses to dry climatic conditions were even found in irrigated trees at one of our sites, which might be linked to tree growth becoming more sensitive to drought with increasing tree height and leaf area. In order to improve predictions of future forest development, long-term studies are necessary that consider lagged responses and adjustment processes of trees to changes in water availability. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Ribbons characterize magnetohydrodynamic magnetic fields better than lines: a lesson from dynamo theory

NASA Astrophysics Data System (ADS)

Blackman, Eric G.; Hubbard, Alexander

2014-08-01

Blackman and Brandenburg argued that magnetic helicity conservation in dynamo theory can in principle be captured by diagrams of mean field dynamos when the magnetic fields are represented by ribbons or tubes, but not by lines. Here, we present such a schematic ribbon diagram for the α2 dynamo that tracks magnetic helicity and provides distinct scales of large-scale magnetic helicity, small-scale magnetic helicity, and kinetic helicity involved in the process. This also motivates our construction of a new `2.5 scale' minimalist generalization of the helicity-evolving equations for the α2 dynamo that separately allows for these three distinct length-scales while keeping only two dynamical equations. We solve these equations and, as in previous studies, find that the large-scale field first grows at a rate independent of the magnetic Reynolds number RM before quenching to an RM-dependent regime. But we also show that the larger the ratio of the wavenumber where the small-scale current helicity resides to that of the forcing scale, the earlier the non-linear dynamo quenching occurs, and the weaker the large-scale field is at the turnoff from linear growth. The harmony between the theory and the schematic diagram exemplifies a general lesson that magnetic fields in magnetohydrodynamic are better visualized as two-dimensional ribbons (or pairs of lines) rather than single lines.

The extent of shifts in vegetation phenology between rural and urban areas within a human-dominated region.

PubMed

Dallimer, Martin; Tang, Zhiyao; Gaston, Kevin J; Davies, Zoe G

2016-04-01

Urbanization is one of the major environmental challenges facing the world today. One of its particularly pressing effects is alterations to local and regional climate through, for example, the Urban Heat Island. Such changes in conditions are likely to have an impact on the phenology of urban vegetation, which will have knock-on implications for the role that urban green infrastructure can play in delivering multiple ecosystem services. Here, in a human-dominated region, we undertake an explicit comparison of vegetation phenology between urban and rural zones. Using satellite-derived MODIS-EVI data from the first decade of the 20th century, we extract metrics of vegetation phenology (date of start of growing season, date of end of growing season, and length of season) for Britain's 15 largest cities and their rural surrounds. On average, urban areas experienced a growing season 8.8 days longer than surrounding rural zones. As would be expected, there was a significant decline in growing season length with latitude (by 3.4 and 2.4 days/degree latitude in rural and urban areas respectively). Although there is considerable variability in how phenology in urban and rural areas differs across our study cities, we found no evidence that built urban form influences the start, end, or length of the growing season. However, the difference in the length of the growing season between rural and urban areas was significantly negatively associated with the mean disposable household income for a city. Vegetation in urban areas deliver many ecosystem services such as temperature mitigation, pollution removal, carbon uptake and storage, the provision of amenity value for humans and habitat for biodiversity. Given the rapid pace of urbanization and ongoing climate change, understanding how vegetation phenology will alter in the future is important if we wish to be able to manage urban greenspaces effectively.

Changes in vegetation phenology on the Mongolian Plateau and their climatic determinants.

PubMed

Miao, Lijuan; Müller, Daniel; Cui, Xuefeng; Ma, Meihong

2017-01-01

Climate change affects the timing of phenological events, such as the start, end, and length of the growing season of vegetation. A better understanding of how the phenology responded to climatic determinants is important in order to better anticipate future climate-ecosystem interactions. We examined the changes of three phenological events for the Mongolian Plateau and their climatic determinants. To do so, we derived three phenological metrics from remotely sensed vegetation indices and associated these with climate data for the period of 1982 to 2011. The results suggested that the start of the growing season advanced by 0.10 days yr-1, the end was delayed by 0.11 days yr-1, and the length of the growing season expanded by 6.3 days during the period from 1982 to 2011. The delayed end and extended length of the growing season were observed consistently in grassland, forest, and shrubland, while the earlier start was only observed in grassland. Partial correlation analysis between the phenological events and the climate variables revealed that higher temperature was associated with an earlier start of the growing season, and both temperature and precipitation contributed to the later ending. Overall, our findings suggest that climate change will substantially alter the vegetation phenology in the grasslands of the Mongolian Plateau, and likely also in biomes with similar environmental conditions, such as other semi-arid steppe regions.

Method for making high-critical-current-density YBa.sub.2 Cu.sub.3 O.sub.7 superconducting layers on metallic substrates

DOEpatents

Feenstra, Roeland; Christen, David; Paranthaman, Mariappan

1999-01-01

A method is disclosed for fabricating YBa.sub.2 Cu.sub.3 O.sub.7 superconductor layers with the capability of carrying large superconducting currents on a metallic tape (substrate) supplied with a biaxially textured oxide buffer layer. The method represents a simplification of previously established techniques and provides processing requirements compatible with scale-up to long wire (tape) lengths and high processing speeds. This simplification has been realized by employing the BaF.sub.2 method to grow a YBa.sub.2 Cu.sub.3 O.sub.7 film on a metallic substrate having a biaxially textured oxide buffer layer.

Controlled Synthesis of Millimeter-Long Silicon Nanowires with Uniform Electronic Properties

PubMed Central

Park, Won Il; Zheng, Gengfeng; Jiang, Xiaocheng; Tian, Bozhi; Lieber, Charles M.

2009-01-01

We report the nanocluster-catalyzed growth of ultra-long and highly-uniform single-crystalline silicon nanowires (SiNWs) with millimeter-scale lengths and aspect ratios up to ca. 100,000. The average SiNW growth rate using disilane (Si2H6) at 400 °C was 31 µm/min, while the growth rate determined for silane (SiH4) reactant under similar growth conditions was 130 times lower. Transmission electron microscopy studies of millimeter-long SiNWs with diameters of 20–80 nm show that the nanowires grow preferentially along the <110> direction independent of diameter. In addition, ultra-long SiNWs were used as building blocks to fabricate one-dimensional arrays of field-effect transistors (FETs) consisting of ca. 100 independent devices per nanowire. Significantly, electrical transport measurements demonstrated that the millimeter-long SiNWs had uniform electrical properties along the entire length of wires, and each device can behave as a reliable FET with an on-state current, threshold voltage, and transconductance values (average ± 1 standard deviation) of 1.8 ± 0.3 µA, 6.0 ± 1.1 V, 210 ± 60 nS, respectively. Electronically-uniform millimeter-long SiNWs were also functionalized with monoclonal antibody receptors, and used to demonstrate multiplexed detection of cancer marker proteins with a single nanowire. The synthesis of structurally- and electronically-uniform ultra-long SiNWs may open up new opportunities for integrated nanoelectronics, and could serve as unique building blocks linking integrated structures from the nanometer through millimeter length scales. PMID:18710294

SU-E-I-16: Scan Length Dependency of the Radial Dose Distribution in a Long Polyethylene Cylinder

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bakalyar, D; McKenney, S; Feng, W

Purpose: The area-averaged dose in the central plane of a long cylinder following a CT scan depends upon the radial dose distribution and the length of the scan. The ICRU/TG200 phantom, a polyethylene cylinder 30 cm in diameter and 60 cm long, was the subject of this study. The purpose was to develop an analytic function that could determine the dose for a scan length L at any point in the central plane of this phantom. Methods: Monte Carlo calculations were performed on a simulated ICRU/TG200 phantom under conditions of cylindrically symmetric conditions of irradiation. Thus, the radial dose distributionmore » function must be an even function that accounts for two competing effects: The direct beam makes its weakest contribution at the center while the scatter begins abruptly at the outer radius and grows as the center is approached. The scatter contribution also increases with scan length with the increase approaching its limiting value at the periphery faster than along the central axis. An analytic function was developed that fit the data and possessed these features. Results: Symmetry and continuity dictate a local extremum at the center which is a minimum for the ICRU/TG200 phantom. The relative depth of the minimum decreases as the scan length grows and an absolute maximum can occur between the center and outer edge of the cylinders. As the scan length grows, the relative dip in the center decreases so that for very long scan lengths, the dose profile is relatively flat. Conclusion: An analytic function characterizes the radial and scan length dependency of dose for long cylindrical phantoms. The function can be integrated with the results expressed in closed form. One use for this is to help determine average dose distribution over the central cylinder plane for any scan length.« less

Gas Atmospheres Improve Silicon-Ribbon Quality

NASA Technical Reports Server (NTRS)

Wald, F. V.; Kalejs, J. P.

1985-01-01

Growing crystal surrounded by gas containing carbon or oxygen. Ribbon of solid silicon, edgewise, grows from pool of molten silicon in die. Gases flowing through orifice ensure longer diffusion length and less contaminiation by carbide particles in product.

Inherent length-scales of periodic solar wind number density structures

NASA Astrophysics Data System (ADS)

Viall, N. M.; Kepko, L.; Spence, H. E.

2008-07-01

We present an analysis of the radial length-scales of periodic solar wind number density structures. We converted 11 years (1995-2005) of solar wind number density data into radial length series segments and Fourier analyzed them to identify all spectral peaks with radial wavelengths between 72 (116) and 900 (900) Mm for slow (fast) wind intervals. Our window length for the spectral analysis was 9072 Mm, approximately equivalent to 7 (4) h of data for the slow (fast) solar wind. We required that spectral peaks pass both an amplitude test and a harmonic F-test at the 95% confidence level simultaneously. From the occurrence distributions of these spectral peaks for slow and fast wind, we find that periodic number density structures occur more often at certain radial length-scales than at others, and are consistently observed within each speed range over most of the 11-year interval. For the slow wind, those length-scales are L ˜ 73, 120, 136, and 180 Mm. For the fast wind, those length-scales are L ˜ 187, 270 and 400 Mm. The results argue for the existence of inherent radial length-scales in the solar wind number density.

Temperature, Sowing and Harvest Dates, and Yield of Maize in the Southwestern US

NASA Astrophysics Data System (ADS)

Kafatos, M.; Stack, D.; Myoung, B.; Kim, S. H.; Kim, J.

2014-12-01

Since sowing date of maize is sensitive to climate variability and changes, it is of a practical importance to examine how sowing dates affect maize yields in various temperature regimes in the southwestern US. A 21-year (1991-2011) simulation of maize yield using Agricultural Production Systems sIMulator (APSIM) with observed meteorological forcing, shows that earlier sowing dates are favorable for higher yields primarily by increasing the length of growing season in cold mountaineous regions. In these regions, warmer conditions in the sowing period tend to advance the sowing date and then enhance yield. Over low-elevation warm regions, yields are less correlated with sowing dates and the length of growing season, perhaps because growing season temperatures are high enough for fast growth. Instead, in the warm regions, maize yields are sensitive to temperature variations during the late growing season due to adverse effects of extreme high temperature events on maize development.

The Germination of Several Tree Species in Plastic Greenhouses

Treesearch

Howard M. Phipps

1969-01-01

The technique of growing tree seedlings in plastic greenhouses is being evaluated for red pine, jack pine, white spruce, and yellow birch at the Chittenden Nursery in northern Lower Michigan. Both a long growing season and a normal-length growing season in plastic greenhouses were compared with standard outdoor nursery beds (control). First-year results showed that...

External hyphal production of vesicular-arbuscular mycorrhizal fungi in pasture and tallgrass prairie communities.

PubMed

Miller, R M; Jastrow, J D; Reinhardt, D R

1995-07-01

External hyphae of vesicular-arbuscular mycorrhizal (VAM) fungi were quantified over a growing season in a reconstructed tallgrass prairie and an ungrazed cool-season pasture. In both sites, hyphal lengths increased throughout the growing season. Peak external hyphal lengths were 111 m cm -3 of soil in the prairie and 81 m cm -3 of soil in the pasture. These hyphal lengths calculate to external hyphal dry weights of 457 μg cm -3 and 339 μg cm -3 of soil for prairie and pasture communities, respectively. The relationships among external hyphal length, root characteristics, soil P and soil moisture were also determined. Measures of gross root morphology [e.g., specific root length (SRL) and root mass] have a strong association with external hyphal length. Over the course of the study, both grassland communities experienced a major drought event in late spring. During this period a reduction in SRL occurred in both the pasture and prairie without a measured reduction in external hyphal length. Recovery for both the pasture and prairie occurred not by increasing SRL, but rather by increasing external hyphal length. This study suggests that growth is coordinated between VAM hyphae and root morphology, which in turn, are constrained by plant community composition and soil nutrient and moisture conditions.

Nonlinear spherical perturbations in quintessence models of dark energy

NASA Astrophysics Data System (ADS)

Pratap Rajvanshi, Manvendra; Bagla, J. S.

2018-06-01

Observations have confirmed the accelerated expansion of the universe. The accelerated expansion can be modelled by invoking a cosmological constant or a dynamical model of dark energy. A key difference between these models is that the equation of state parameter w for dark energy differs from ‑1 in dynamical dark energy (DDE) models. Further, the equation of state parameter is not constant for a general DDE model. Such differences can be probed using the variation of scale factor with time by measuring distances. Another significant difference between the cosmological constant and DDE models is that the latter must cluster. Linear perturbation analysis indicates that perturbations in quintessence models of dark energy do not grow to have a significant amplitude at small length scales. In this paper we study the response of quintessence dark energy to non-linear perturbations in dark matter. We use a fully relativistic model for spherically symmetric perturbations. In this study we focus on thawing models. We find that in response to non-linear perturbations in dark matter, dark energy perturbations grow at a faster rate than expected in linear perturbation theory. We find that dark energy perturbation remains localised and does not diffuse out to larger scales. The dominant drivers of the evolution of dark energy perturbations are the local Hubble flow and a supression of gradients of the scalar field. We also find that the equation of state parameter w changes in response to perturbations in dark matter such that it also becomes a function of position. The variation of w in space is correlated with density contrast for matter. Variation of w and perturbations in dark energy are more pronounced in response to large scale perturbations in matter while the dependence on the amplitude of matter perturbations is much weaker.

Solute-specific scaling of inorganic nitrogen and phosphorus uptake in streams

NASA Astrophysics Data System (ADS)

Hall, R. O., Jr.; Baker, M. A.; Rosi-Marshall, E. J.; Tank, J. L.; Newbold, J. D.

2013-11-01

Stream ecosystem processes such as nutrient cycling may vary with stream position in the network. Using a scaling approach, we examined the relationship between stream size and nutrient uptake length, which represents the mean distance that a dissolved solute travels prior to removal from the water column. Ammonium (NH4+) uptake length increased proportionally with stream size measured as specific discharge (discharge/stream width) with a scaling exponent = 1.01. In contrast, uptake lengths for nitrate (NO3-) and soluble reactive phosphorus (SRP) increased more rapidly than increases in specific discharge (scaling exponents = 1.19 for NO3- and 1.35 for SRP). Additionally, the ratio of inorganic nitrogen (N) uptake length to SRP uptake length declined with stream size; there was relatively lower demand for SRP compared to N as stream size increased. Finally, we related the scaling of uptake length with specific discharge to that of stream length using Hack's law and downstream hydraulic geometry. Ammonium uptake length increased less than proportionally with distance from the headwaters, suggesting a strong role for larger streams and rivers in regulating nutrient transport.

Morphology and Length Correlated in Terminal Flushes of Longleaf Pine Saplings

Treesearch

R.M. Allen; N.M. Scarbrough

1970-01-01

In longleafpine (Pinuspalustris Mill.) saplings growing in southern Mississippi the length of the first or spring flush was significantly correlated with that of the second flush; the correlation of length between flushes two and three was also statistically significant. The correlations were due more to similarities in internode elongation than to node number. Flush...

The Snakelike Chain Character of Unstructured RNA

PubMed Central

Jacobson, David R.; McIntosh, Dustin B.; Saleh, Omar A.

2013-01-01

In the absence of base-pairing and tertiary structure, ribonucleic acid (RNA) assumes a random-walk conformation, modulated by the electrostatic self-repulsion of the charged, flexible backbone. This behavior is often modeled as a Kratky-Porod “wormlike chain” (WLC) with a Barrat-Joanny scale-dependent persistence length. In this study we report measurements of the end-to-end extension of poly(U) RNA under 0.1 to 10 pN applied force and observe two distinct elastic-response regimes: a low-force, power-law regime characteristic of a chain of swollen blobs on long length scales and a high-force, salt-valence-dependent regime consistent with ion-stabilized crumpling on short length scales. This short-scale structure is additionally supported by force- and salt-dependent quantification of the RNA ion atmosphere composition, which shows that ions are liberated under stretching; the number of ions liberated increases with increasing bulk salt concentration. Both this result and the observation of two elastic-response regimes directly contradict the WLC model, which predicts a single elastic regime across all forces and, when accounting for scale-dependent persistence length, the opposite trend in ion release with salt concentration. We conclude that RNA is better described as a “snakelike chain,” characterized by smooth bending on long length scales and ion-stabilized crumpling on short length scales. In monovalent salt, these two regimes are separated by a characteristic length that scales with the Debye screening length, highlighting the determining importance of electrostatics in RNA conformation. PMID:24314087

Nonequilibrium relaxations within the ground-state manifold in the antiferromagnetic Ising model on a triangular lattice.

PubMed

Kim, Eunhye; Lee, Sung Jong; Kim, Bongsoo

2007-02-01

We present an extensive Monte Carlo simulation study on the nonequilibrium kinetics of triangular antiferromagnetic Ising model within the ground state ensemble which consists of sectors, each of which is characterized by a unique value of the string density p through a dimer covering method. Building upon our recent work [Phys. Rev. E 68, 066127 (2003)] where we considered the nonequilibrium relaxation observed within the dominant sector with p=2/3, we here focus on the nonequilibrium kinetics within the minor sectors with p<2/3. The initial configurations are chosen as those in which the strings are straight and evenly distributed. In the minor sectors, we observe a characteristic spatial anisotropy in both equilibrium and nonequilibrium spatial correlations. We observe emergence of a critical relaxation region (in the spatial and temporal domain) which grows as p deviates from p=2/3. Spatial anisotropy appears in the equilibrium spatial correlation with the characteristic length scale xi(e,V)(p) diverging with vanishing string density as xi(e,V)(p) approximately p(-2) along the vertical direction, while along the horizontal direction the spatial length scale diverges as xi(e,H) approximately p(-1). Analytic forms for the anisotropic equilibrium correlation functions are given. We also find that the spin autocorrelation function A(t) shows a simple scaling behavior A(t)=A(t/tau(A)(p)), where the time scale tau(A)(p) shows a power-law divergence with vanishing p as tau(A)(p) approximately p(-phi) with phi approximately or equal to 4. These features can be understood in terms of random walk nature of the fluctuations of the strings within the typical separation between neighboring strings.

Experimental evidence for two thermodynamic length scales in neutralized polyacrylate gels

NASA Astrophysics Data System (ADS)

Horkay, Ferenc; Hecht, Anne-Marie; Grillo, Isabelle; Basser, Peter J.; Geissler, Erik

2002-11-01

The small angle neutron scattering (SANS) behavior of fully neutralized sodium polyacrylate gels is investigated in the presence of calcium ions. Analysis of the SANS response reveals the existence of three characteristic length scales, two of which are of thermodynamic origin, while the third length is associated with the frozen-in structural inhomogeneities. This latter contribution exhibits power law behavior with a slope of about -3.6, reflecting the presence of interfaces. The osmotically active component of the scattering signal is defined by two characteristic length scales, a correlation length ξ and a persistence length L.

Scaling Effects on Materials Tribology: From Macro to Micro Scale.

PubMed

Stoyanov, Pantcho; Chromik, Richard R

2017-05-18

The tribological study of materials inherently involves the interaction of surface asperities at the micro to nanoscopic length scales. This is the case for large scale engineering applications with sliding contacts, where the real area of contact is made up of small contacting asperities that make up only a fraction of the apparent area of contact. This is why researchers have sought to create idealized experiments of single asperity contacts in the field of nanotribology. At the same time, small scale engineering structures known as micro- and nano-electromechanical systems (MEMS and NEMS) have been developed, where the apparent area of contact approaches the length scale of the asperities, meaning the real area of contact for these devices may be only a few asperities. This is essentially the field of microtribology, where the contact size and/or forces involved have pushed the nature of the interaction between two surfaces towards the regime where the scale of the interaction approaches that of the natural length scale of the features on the surface. This paper provides a review of microtribology with the purpose to understand how tribological processes are different at the smaller length scales compared to macrotribology. Studies of the interfacial phenomena at the macroscopic length scales (e.g., using in situ tribometry) will be discussed and correlated with new findings and methodologies at the micro-length scale.

Scaling Effects on Materials Tribology: From Macro to Micro Scale

PubMed Central

Stoyanov, Pantcho; Chromik, Richard R.

2017-01-01

The tribological study of materials inherently involves the interaction of surface asperities at the micro to nanoscopic length scales. This is the case for large scale engineering applications with sliding contacts, where the real area of contact is made up of small contacting asperities that make up only a fraction of the apparent area of contact. This is why researchers have sought to create idealized experiments of single asperity contacts in the field of nanotribology. At the same time, small scale engineering structures known as micro- and nano-electromechanical systems (MEMS and NEMS) have been developed, where the apparent area of contact approaches the length scale of the asperities, meaning the real area of contact for these devices may be only a few asperities. This is essentially the field of microtribology, where the contact size and/or forces involved have pushed the nature of the interaction between two surfaces towards the regime where the scale of the interaction approaches that of the natural length scale of the features on the surface. This paper provides a review of microtribology with the purpose to understand how tribological processes are different at the smaller length scales compared to macrotribology. Studies of the interfacial phenomena at the macroscopic length scales (e.g., using in situ tribometry) will be discussed and correlated with new findings and methodologies at the micro-length scale. PMID:28772909

Length scale effects of friction in particle compaction using atomistic simulations and a friction scaling model

NASA Astrophysics Data System (ADS)

Stone, T. W.; Horstemeyer, M. F.

2012-09-01

The objective of this study is to illustrate and quantify the length scale effects related to interparticle friction under compaction. Previous studies have shown as the length scale of a specimen decreases, the strength of a single crystal metal or ceramic increases. The question underlying this research effort continues the thought—If there is a length scale parameter related to the strength of a material, is there a length scale parameter related to friction? To explore the length scale effects of friction, molecular dynamics (MD) simulations using an embedded atom method potential were performed to analyze the compression of two spherical FCC nickel nanoparticles at different contact angles. In the MD model study, we applied a macroscopic plastic contact formulation to determine the normal plastic contact force at the particle interfaces and used the average shear stress from the MD simulations to determine the tangential contact forces. Combining this information with the Coulomb friction law, we quantified the MD interparticle coefficient of friction and showed good agreement with experimental studies and a Discrete Element Method prediction as a function of contact angle. Lastly, we compared our MD simulation friction values to the tribological predictions of Bhushan and Nosonovsky (BN), who developed a friction scaling model based on strain gradient plasticity and dislocation-assisted sliding that included a length scale parameter. The comparison revealed that the BN elastic friction scaling model did a much better job than the BN plastic scaling model of predicting the coefficient of friction values obtained from the MD simulations.

Phenological Indicators of Vegetation Recovery in Wetland Ecosystems

NASA Astrophysics Data System (ADS)

Taddeo, S.; Dronova, I.

2017-12-01

Landscape phenology is increasingly used to measure the impacts of climatic and environmental disturbances on plant communities. As plants show rapid phenological responses to environmental changes, variation in site phenology can help characterize vegetation recovery following restoration treatments and qualify their resistance to environmental fluctuations. By leveraging free remote sensing datasets, a phenology-based analysis of vegetation dynamics could offer a cost-effective assessment of restoration progress in wetland ecosystems. To fulfill this objective, we analyze 20 years of free remote sensing data from NASA's Landsat archive to offer a landscape-scale synthesis of wetland restoration efforts in the Sacramento-San Joaquin Delta of California, USA. Through an analysis of spatio-temporal changes in plant phenology and greenness, we assess how 25 restored wetlands across the Delta have responded to restoration treatments, time, and landscape context. We use a spline smoothing approach to generate both site-wide and pixel-specific phenological curves and identify key phenological events. Preliminary results reveal a greater variability in greenness and growing season length during the initial post-restoration years and a significant impact of landscape context in the time needed to reach phenological stability. Well-connected sites seem to benefit from an increased availability of propagules enabling them to reach peak greenness and maximum growing season length more rapidly. These results demonstrate the potential of phenological analyses to measure restoration progress and detect factors promoting wetland recovery. A thorough understanding of wetland phenology is key to the quantification of ecosystem processes including carbon sequestration and habitat provisioning.

Dynamic scaling in natural swarms

NASA Astrophysics Data System (ADS)

Cavagna, Andrea; Conti, Daniele; Creato, Chiara; Del Castello, Lorenzo; Giardina, Irene; Grigera, Tomas S.; Melillo, Stefania; Parisi, Leonardo; Viale, Massimiliano

2017-09-01

Collective behaviour in biological systems presents theoretical challenges beyond the borders of classical statistical physics. The lack of concepts such as scaling and renormalization is particularly problematic, as it forces us to negotiate details whose relevance is often hard to assess. In an attempt to improve this situation, we present here experimental evidence of the emergence of dynamic scaling laws in natural swarms of midges. We find that spatio-temporal correlation functions in different swarms can be rescaled by using a single characteristic time, which grows with the correlation length with a dynamical critical exponent z ~ 1, a value not found in any other standard statistical model. To check whether out-of-equilibrium effects may be responsible for this anomalous exponent, we run simulations of the simplest model of self-propelled particles and find z ~ 2, suggesting that natural swarms belong to a novel dynamic universality class. This conclusion is strengthened by experimental evidence of the presence of non-dissipative modes in the relaxation, indicating that previously overlooked inertial effects are needed to describe swarm dynamics. The absence of a purely dissipative regime suggests that natural swarms undergo a near-critical censorship of hydrodynamics.

How much a galaxy knows about its large-scale environment?: An information theoretic perspective

NASA Astrophysics Data System (ADS)

Pandey, Biswajit; Sarkar, Suman

2017-05-01

The small-scale environment characterized by the local density is known to play a crucial role in deciding the galaxy properties but the role of large-scale environment on galaxy formation and evolution still remain a less clear issue. We propose an information theoretic framework to investigate the influence of large-scale environment on galaxy properties and apply it to the data from the Galaxy Zoo project that provides the visual morphological classifications of ˜1 million galaxies from the Sloan Digital Sky Survey. We find a non-zero mutual information between morphology and environment that decreases with increasing length-scales but persists throughout the entire length-scales probed. We estimate the conditional mutual information and the interaction information between morphology and environment by conditioning the environment on different length-scales and find a synergic interaction between them that operates up to at least a length-scales of ˜30 h-1 Mpc. Our analysis indicates that these interactions largely arise due to the mutual information shared between the environments on different length-scales.

Size-dependent elastic/inelastic behavior of enamel over millimeter and nanometer length scales.

PubMed

Ang, Siang Fung; Bortel, Emely L; Swain, Michael V; Klocke, Arndt; Schneider, Gerold A

2010-03-01

The microstructure of enamel like most biological tissues has a hierarchical structure which determines their mechanical behavior. However, current studies of the mechanical behavior of enamel lack a systematic investigation of these hierarchical length scales. In this study, we performed macroscopic uni-axial compression tests and the spherical indentation with different indenter radii to probe enamel's elastic/inelastic transition over four hierarchical length scales, namely: 'bulk enamel' (mm), 'multiple-rod' (10's microm), 'intra-rod' (100's nm with multiple crystallites) and finally 'single-crystallite' (10's nm with an area of approximately one hydroxyapatite crystallite). The enamel's elastic/inelastic transitions were observed at 0.4-17 GPa depending on the length scale and were compared with the values of synthetic hydroxyapatite crystallites. The elastic limit of a material is important as it provides insights into the deformability of the material before fracture. At the smallest investigated length scale (contact radius approximately 20 nm), elastic limit is followed by plastic deformation. At the largest investigated length scale (contact size approximately 2 mm), only elastic then micro-crack induced response was observed. A map of elastic/inelastic regions of enamel from millimeter to nanometer length scale is presented. Possible underlying mechanisms are also discussed. (c) 2009 Elsevier Ltd. All rights reserved.

Implementation of a flow-dependent background error correlation length scale formulation in the NEMOVAR OSTIA system

NASA Astrophysics Data System (ADS)

Fiedler, Emma; Mao, Chongyuan; Good, Simon; Waters, Jennifer; Martin, Matthew

2017-04-01

OSTIA is the Met Office's Operational Sea Surface Temperature (SST) and Ice Analysis system, which produces L4 (globally complete, gridded) analyses on a daily basis. Work is currently being undertaken to replace the original OI (Optimal Interpolation) data assimilation scheme with NEMOVAR, a 3D-Var data assimilation method developed for use with the NEMO ocean model. A dual background error correlation length scale formulation is used for SST in OSTIA, as implemented in NEMOVAR. Short and long length scales are combined according to the ratio of the decomposition of the background error variances into short and long spatial correlations. The pre-defined background error variances vary spatially and seasonally, but not on shorter time-scales. If the derived length scales applied to the daily analysis are too long, SST features may be smoothed out. Therefore a flow-dependent component to determining the effective length scale has also been developed. The total horizontal gradient of the background SST field is used to identify regions where the length scale should be shortened. These methods together have led to an improvement in the resolution of SST features compared to the previous OI analysis system, without the introduction of spurious noise. This presentation will show validation results for feature resolution in OSTIA using the OI scheme, the dual length scale NEMOVAR scheme, and the flow-dependent implementation.

Human climbing with efficiently scaled gecko-inspired dry adhesives

PubMed Central

Hawkes, Elliot W.; Eason, Eric V.; Christensen, David L.; Cutkosky, Mark R.

2015-01-01

Since the discovery of the mechanism of adhesion in geckos, many synthetic dry adhesives have been developed with desirable gecko-like properties such as reusability, directionality, self-cleaning ability, rough surface adhesion and high adhesive stress. However, fully exploiting these adhesives in practical applications at different length scales requires efficient scaling (i.e. with little loss in adhesion as area grows). Just as natural gecko adhesives have been used as a benchmark for synthetic materials, so can gecko adhesion systems provide a baseline for scaling efficiency. In the tokay gecko (Gekko gecko), a scaling power law has been reported relating the maximum shear stress σmax to the area A: σmax ∝ A−1/4. We present a mechanical concept which improves upon the gecko's non-uniform load-sharing and results in a nearly even load distribution over multiple patches of gecko-inspired adhesive. We created a synthetic adhesion system incorporating this concept which shows efficient scaling across four orders of magnitude of area, yielding an improved scaling power law: σmax ∝ A−1/50. Furthermore, we found that the synthetic adhesion system does not fail catastrophically when a simulated failure is induced on a portion of the adhesive. In a practical demonstration, the synthetic adhesion system enabled a 70 kg human to climb vertical glass with 140 cm2 of adhesive per hand. PMID:25411404

Linking topology of tethered polymer rings with applications to chromosome segregation and estimation of the knotting length.

PubMed

Marko, John F

2009-05-01

The Gauss linking number (Ca) of two flexible polymer rings which are tethered to one another is investigated. For ideal random walks, mean linking-squared varies with the square root of polymer length while for self-avoiding walks, linking-squared increases logarithmically with polymer length. The free-energy cost of linking of polymer rings is therefore strongly dependent on degree of self-avoidance, i.e., on intersegment excluded volume. Scaling arguments and numerical data are used to determine the free-energy cost of fixed linking number in both the fluctuation and large-Ca regimes; for ideal random walks, for |Ca|>N;{1/4} , the free energy of catenation is found to grow proportional, variant|Ca/N;{1/4}|;{4/3} . When excluded volume interactions between segments are present, the free energy rapidly approaches a linear dependence on Gauss linking (dF/dCa approximately 3.7k_{B}T) , suggestive of a novel "catenation condensation" effect. These results are used to show that condensation of long entangled polymers along their length, so as to increase excluded volume while decreasing number of statistical segments, can drive disentanglement if a mechanism is present to permit topology change. For chromosomal DNA molecules, lengthwise condensation is therefore an effective means to bias topoisomerases to eliminate catenations between replicated chromatids. The results for mean-square catenation are also used to provide a simple approximate estimate for the "knotting length," or number of segments required to have a knot along a single circular polymer, explaining why the knotting length ranges from approximately 300 for an ideal random walk to 10;{6} for a self-avoiding walk.

Coarsening of stripe patterns: variations with quench depth and scaling.

PubMed

Tripathi, Ashwani K; Kumar, Deepak

2015-02-01

The coarsening of stripe patterns when the system is evolved from random initial states is studied by varying the quench depth ε, which is a measure of distance from the transition point of the stripe phase. The dynamics of the growth of stripe order, which is characterized by two length scales, depends on the quench depth. The growth exponents of the two length scales vary continuously with ε. The decay exponents for free energy, stripe curvature, and densities of defects like grain boundaries and dislocations also show similar variation. This implies a breakdown of the standard picture of nonequilibrium dynamical scaling. In order to understand the variations with ε we propose an additional scaling with a length scale dependent on ε. The main contribution to this length scale comes from the "pinning potential," which is unique to systems where the order parameter is spatially periodic. The periodic order parameter gives rise to an ε-dependent potential, which can pin defects like grain boundaries, dislocations, etc. This additional scaling provides a compact description of variations of growth exponents with quench depth in terms of just one exponent for each of the length scales. The relaxation of free energy, stripe curvature, and the defect densities have also been related to these length scales. The study is done at zero temperature using Swift-Hohenberg equation in two dimensions.

Interactions between a fractal tree-like object and hydrodynamic turbulence: flow structure and characteristic mixing length

NASA Astrophysics Data System (ADS)

Meneveau, C. V.; Bai, K.; Katz, J.

2011-12-01

The vegetation canopy has a significant impact on various physical and biological processes such as forest microclimate, rainfall evaporation distribution and climate change. Most scaled laboratory experimental studies have used canopy element models that consist of rigid vertical strips or cylindrical rods that can be typically represented through only one or a few characteristic length scales, for example the diameter and height for cylindrical rods. However, most natural canopies and vegetation are highly multi-scale with branches and sub-branches, covering a wide range of length scales. Fractals provide a convenient idealization of multi-scale objects, since their multi-scale properties can be described in simple ways (Mandelbrot 1982). While fractal aspects of turbulence have been studied in several works in the past decades, research on turbulence generated by fractal objects started more recently. We present an experimental study of boundary layer flow over fractal tree-like objects. Detailed Particle-Image-Velocimetry (PIV) measurements are carried out in the near-wake of a fractal-like tree. The tree is a pre-fractal with five generations, with three branches and a scale reduction factor 1/2 at each generation. Its similarity fractal dimension (Mandelbrot 1982) is D ~ 1.58. Detailed mean velocity and turbulence stress profiles are documented, as well as their downstream development. We then turn attention to the turbulence mixing properties of the flow, specifically to the question whether a mixing length-scale can be identified in this flow, and if so, how it relates to the geometric length-scales in the pre-fractal object. Scatter plots of mean velocity gradient (shear) and Reynolds shear stress exhibit good linear relation at all locations in the flow. Therefore, in the transverse direction of the wake evolution, the Boussinesq eddy viscosity concept is appropriate to describe the mixing. We find that the measured mixing length increases with increasing streamwise locations. Conversely, the measured eddy viscosity and mixing length decrease with increasing elevation, which differs from eddy viscosity and mixing length behaviors of traditional boundary layers or canopies studied before. In order to find an appropriate length for the flow, several models based on the notion of superposition of scales are proposed and examined. One approach is based on spectral distributions. Another more practical approach is based on length-scale distributions evaluated using fractal geometry tools. These proposed models agree well with the measured mixing length. The results indicate that information about multi-scale clustering of branches as it occurs in fractals has to be incorporated into models of the mixing length for flows through canopies with multiple scales. The research is supported by National Science Foundation grant ATM-0621396 and AGS-1047550.

Variability of interconnected wind plants: correlation length and its dependence on variability time scale

DOE PAGES

St. Martin, Clara M.; Lundquist, Julie K.; Handschy, Mark A.

2015-04-02

The variability in wind-generated electricity complicates the integration of this electricity into the electrical grid. This challenge steepens as the percentage of renewably-generated electricity on the grid grows, but variability can be reduced by exploiting geographic diversity: correlations between wind farms decrease as the separation between wind farms increases. However, how far is far enough to reduce variability? Grid management requires balancing production on various timescales, and so consideration of correlations reflective of those timescales can guide the appropriate spatial scales of geographic diversity grid integration. To answer 'how far is far enough,' we investigate the universal behavior of geographic diversity by exploring wind-speed correlations using three extensive datasets spanning continents, durations and time resolution. First, one year of five-minute wind power generation data from 29 wind farms span 1270 km across Southeastern Australia (Australian Energy Market Operator). Second, 45 years of hourly 10 m wind-speeds from 117 stations span 5000 km across Canada (National Climate Data Archive of Environment Canada). Finally, four years of five-minute wind-speeds from 14 meteorological towers span 350 km of the Northwestern US (Bonneville Power Administration). After removing diurnal cycles and seasonal trends from all datasets, we investigate dependence of correlation length on time scale by digitally high-pass filtering the data on 0.25–2000 h timescales and calculating correlations between sites for each high-pass filter cut-off. Correlations fall to zero with increasing station separation distance, but the characteristic correlation length varies with the high-pass filter applied: the higher the cut-off frequency, the smaller the station separation required to achieve de-correlation. Remarkable similarities between these three datasets reveal behavior that, if universal, could be particularly useful for grid management. For high-pass filter time constants shorter than about τ = 38 h, all datasets exhibit a correlation lengthmore » $$\\xi $$ that falls at least as fast as $${{\\tau }^{-1}}$$ . Since the inter-site separation needed for statistical independence falls for shorter time scales, higher-rate fluctuations can be effectively smoothed by aggregating wind plants over areas smaller than otherwise estimated.« less

The snakelike chain character of unstructured RNA.

PubMed

Jacobson, David R; McIntosh, Dustin B; Saleh, Omar A

2013-12-03

In the absence of base-pairing and tertiary structure, ribonucleic acid (RNA) assumes a random-walk conformation, modulated by the electrostatic self-repulsion of the charged, flexible backbone. This behavior is often modeled as a Kratky-Porod "wormlike chain" (WLC) with a Barrat-Joanny scale-dependent persistence length. In this study we report measurements of the end-to-end extension of poly(U) RNA under 0.1 to 10 pN applied force and observe two distinct elastic-response regimes: a low-force, power-law regime characteristic of a chain of swollen blobs on long length scales and a high-force, salt-valence-dependent regime consistent with ion-stabilized crumpling on short length scales. This short-scale structure is additionally supported by force- and salt-dependent quantification of the RNA ion atmosphere composition, which shows that ions are liberated under stretching; the number of ions liberated increases with increasing bulk salt concentration. Both this result and the observation of two elastic-response regimes directly contradict the WLC model, which predicts a single elastic regime across all forces and, when accounting for scale-dependent persistence length, the opposite trend in ion release with salt concentration. We conclude that RNA is better described as a "snakelike chain," characterized by smooth bending on long length scales and ion-stabilized crumpling on short length scales. In monovalent salt, these two regimes are separated by a characteristic length that scales with the Debye screening length, highlighting the determining importance of electrostatics in RNA conformation. Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Probing cooperative force generation in collective cancer invasion

NASA Astrophysics Data System (ADS)

Alobaidi, Amani A.; Xu, Yaopengxiao; Chen, Shaohua; Jiao, Yang; Sun, Bo

2017-08-01

Collective cellular dynamics in the three-dimensional extracellular matrix (ECM) plays a crucial role in many physiological processes such as cancer invasion. Both chemical and mechanical signaling support cell-cell communications on a variety of length scales, leading to collective migratory behaviors. Here we conduct experiments using 3D in vitro tumor models and develop a phenomenological model in order to probe the cooperativity of force generation in the collective invasion of breast cancer cells. In our model, cell-cell communication is characterized by a single parameter that quantifies the correlation length of cellular migration cycles. We devise a stochastic reconstruction method to generate realizations of cell colonies with specific contraction phase correlation functions and correlation length a. We find that as a increases, the characteristic size of regions containing cells with similar contraction phases grows. For small a values, the large fluctuations in individual cell contraction phases smooth out the temporal fluctuations in the time-dependent deformation field in the ECM. For large a values, the periodicity of an individual cell contraction cycle is clearly manifested in the temporal variation of the overall deformation field in the ECM. Through quantitative comparisons of the simulated and experimentally measured deformation fields, we find that the correlation length for collective force generation in the breast cancer diskoid in geometrically micropatterned ECM (DIGME) system is a≈ 25~μ \\text{m} , which is roughly twice the linear size of a single cell. One possible mechanism for this intermediate cell correlation length is the fiber-mediated stress propagation in the 3D ECM network in the DIGME system.

Length-scale dependent mechanical properties of Al-Cu eutectic alloy: Molecular dynamics based model and its experimental verification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tiwary, C. S., E-mail: cst.iisc@gmail.com; Chattopadhyay, K.; Chakraborty, S.

2014-05-28

This paper attempts to gain an understanding of the effect of lamellar length scale on the mechanical properties of two-phase metal-intermetallic eutectic structure. We first develop a molecular dynamics model for the in-situ grown eutectic interface followed by a model of deformation of Al-Al{sub 2}Cu lamellar eutectic. Leveraging the insights obtained from the simulation on the behaviour of dislocations at different length scales of the eutectic, we present and explain the experimental results on Al-Al{sub 2}Cu eutectic with various different lamellar spacing. The physics behind the mechanism is further quantified with help of atomic level energy model for different lengthmore » scale as well as different strain. An atomic level energy partitioning of the lamellae and the interface regions reveals that the energy of the lamellae core are accumulated more due to dislocations irrespective of the length-scale. Whereas the energy of the interface is accumulated more due to dislocations when the length-scale is smaller, but the trend is reversed when the length-scale is large beyond a critical size of about 80 nm.« less

Taming active turbulence with patterned soft interfaces.

PubMed

Guillamat, P; Ignés-Mullol, J; Sagués, F

2017-09-15

Active matter embraces systems that self-organize at different length and time scales, often exhibiting turbulent flows apparently deprived of spatiotemporal coherence. Here, we use a layer of a tubulin-based active gel to demonstrate that the geometry of active flows is determined by a single length scale, which we reveal in the exponential distribution of vortex sizes of active turbulence. Our experiments demonstrate that the same length scale reemerges as a cutoff for a scale-free power law distribution of swirling laminar flows when the material evolves in contact with a lattice of circular domains. The observed prevalence of this active length scale can be understood by considering the role of the topological defects that form during the spontaneous folding of microtubule bundles. These results demonstrate an unexpected strategy for active systems to adapt to external stimuli, and provide with a handle to probe the existence of intrinsic length and time scales.Active nematics consist of self-driven components that develop orientational order and turbulent flow. Here Guillamat et al. investigate an active nematic constrained in a quasi-2D geometrical setup and show that there exists an intrinsic length scale that determines the geometry in all forcing regimes.

Chain Dynamics in a Dilute Magnetorheological Fluid

NASA Technical Reports Server (NTRS)

Liu, Jing; Hagenbuchle, Martin

1996-01-01

The structure, formation, and dynamics of dilute, mono-dispersive ferrofluid emulsions in an external magnetic field have been investigated using dynamic light scattering techniques. In the absence of the magnetic field, the emulsion particles are randomly distributed and behave like hard spheres in Brownian motion. An applied magnetic field induces a magnetic dipole moment in each particle. Dipolar interactions between particles align them into chains where correlation functions show two decay processes. The short-time decay shows the motion of straight chains as a whole where the apparent chain length increases with the applied magnetic field and the particle volume fraction. Good scaling results are obtained showing that the apparent chain length grows with time following a power law with exponent of 0.6 and depends on the applied field, particle volume fraction, and diffusion constant of the particles. The long-time decay in the correlation function shows oscillation when the chains reach a certain length with time and stiffness with threshold field This result shows that chains not only fluctuate, but move in a periodic motion with a frequency of 364 Hz at lambda = 15. It may suggest the existence of phonons. This work is the first step in the understanding of the structure formation, especially chain coarsening mechanism, of magnetorheological (MR) fluids at higher volume fractions.

Adaptive-Grid Methods for Phase Field Models of Microstructure Development

NASA Technical Reports Server (NTRS)

Dantzig, Jonathan A.; Goldenfeld, Nigel

2001-01-01

Modeling solidification microstructures has become an area of intense study in recent years. The properties of large scale cast products, ranging from automobile engine blocks to aircraft components and other industrial applications, are strongly dependent on the physics that occur at the mesoscopic and microscopic length scales during solidification. The predominant morphology found in solidification microstructures is the dendrite, a tree-like pattern of solid around which solidification proceeds. The microscopic properties of cast products are determined by the length scales of these dendrites, and their associated segregation profiles. For this reason understanding the mechanisms for pattern selection in dendritic growth has attracted a great deal of interest from the experimental and theoretical communities. In particular, a great deal of research has been undertaken to understand such issues as dendrite morphology, shape and growth speed. Experiments on dendrite evolution in pure materials by Glicksman and coworkers on succinonitrile (SCN), and more recently pivalic acid (PVA), as well as other transparent analogs of metals, have provided tests of theories for dendritic growth, and have stimulated considerable theoretical progress. These experiments have clearly demonstrated that in certain parameter ranges the physics of the dendrite tip can be characterized by a steady value for the dendrite tip velocity, radius of curvature and shape. Away from the tip, the time-dependent dendrite exhibits a characteristic sidebranching as it propagates, which is not yet well understood. These experiments are performed by observing individual dendrites growing into an undercooled melt. The experiments are characterized by the dimensionless undercooling. Most experiments are performed at low undercooling.

Plasmoids in relativistic reconnection, from birth to adulthood: first they grow, then they go

NASA Astrophysics Data System (ADS)

Sironi, Lorenzo; Giannios, Dimitrios; Petropoulou, Maria

2016-10-01

Blobs, or quasi-spherical emission regions containing relativistic particles and magnetic fields, are often assumed ad hoc in emission models of relativistic astrophysical jets, yet their physical origin is still not well understood. Here, we employ a suite of large-scale 2D particle-in-cell simulations in electron-positron plasmas to demonstrate that relativistic magnetic reconnection can naturally account for the formation of quasi-spherical plasmoids filled with high-energy particles and magnetic fields. Our simulations extend to unprecedentedly long temporal and spatial scales, so we can capture the asymptotic physics independently of the initial setup. We characterize the properties of the plasmoids, continuously generated as a self-consistent by-product of the reconnection process: they are in rough energy equipartition between particles and magnetic fields; the upper energy cutoff of the plasmoid particle spectrum is proportional to the plasmoid width w, corresponding to a Larmor radius ˜0.2 w; the plasmoids grow in size at ˜0.1 of the speed of light, with most of the growth happening while they are still non-relativistic (`first they grow'); their growth is suppressed once they get accelerated to relativistic speeds by the field line tension, up to the Alfvén speed (`then they go'). The largest plasmoids reach a width wmax ˜ 0.2 L independently of the system length L, they have nearly isotropic particle distributions and contain the highest energy particles, whose Larmor radius is ˜0.03 L. The latter can be regarded as the Hillas criterion for relativistic reconnection. We briefly discuss the implications of our results for the high-energy emission from relativistic jets and pulsar winds.

Dynamics of alewives in Lake Ontario following a mass mortality

USGS Publications Warehouse

O'Gorman, Robert; Schneider, Clifford P.

1986-01-01

The U.S. Fish and Wildlife Service and the New York Department of Environmental Conservation assessed the population of alewives Alosa pseudoharengus in U.S. waters of Lake Ontario during 1976–1982 with bottom trawls. Alewives were abundant in 1976 but a die-off greatly reduced their numbers during the winter of 1976–1977. The population quickly recovered, however, adult abundance increasing nearly sevenfold during 1978–1981. In spring 1981 the bottom population in southern Lake Ontario was estimated to be 5.25 × 109 fish weighing 128,500 t. Estimated average alewife biomass per hectare during 1978–1982 far exceeded the estimates for either Lake Michigan during 1967–1982 or western Lake Huron during 1973–1982. Recruitment of age-II fish to the population was affected by abundance of adults in two ways: (1) the number of yearlings produced was directly related to adult abundance at low population levels but inversely related at high population levels; and (2) survival of yearlings to age II was inversely related to adult abundance. Growth in 1977 was exceptional, leaving a wide, unmistakable band on scales of the previously slow-growing adults. This wide growth zone served as a marker to identify survivors of the 1976–1977 die-off and to show that each year after 1978 a successively larger proportion of survivors was failing to grow in length or to form an annulus (54% in 1979, 96% in 1980, and 100% in 1981). There was no marker on scales of alewives recruited after the die-off, but the apparent age composition of our catches strongly suggested that most of them also failed to grow in 1981.

Hierarchical approaches for systems modeling in cardiac development.

PubMed

Gould, Russell A; Aboulmouna, Lina M; Varner, Jeffrey D; Butcher, Jonathan T

2013-01-01

Ordered cardiac morphogenesis and function are essential for all vertebrate life. The heart begins as a simple contractile tube, but quickly grows and morphs into a multichambered pumping organ complete with valves, while maintaining regulation of blood flow and nutrient distribution. Though not identical, cardiac morphogenesis shares many molecular and morphological processes across vertebrate species. Quantitative data across multiple time and length scales have been gathered through decades of reductionist single variable analyses. These range from detailed molecular signaling pathways at the cellular levels to cardiac function at the tissue/organ levels. However, none of these components act in true isolation from others, and each, in turn, exhibits short- and long-range effects in both time and space. With the absence of a gene, entire signaling cascades and genetic profiles may be shifted, resulting in complex feedback mechanisms. Also taking into account local microenvironmental changes throughout development, it is apparent that a systems level approach is an essential resource to accelerate information generation concerning the functional relationships across multiple length scales (molecular data vs physiological function) and structural development. In this review, we discuss relevant in vivo and in vitro experimental approaches, compare different computational frameworks for systems modeling, and the latest information about systems modeling of cardiac development. Finally, we conclude with some important future directions for cardiac systems modeling. Copyright © 2013 Wiley Periodicals, Inc.

Lipoproteins: When size really matters

PubMed Central

German, J. Bruce; Smilowitz, Jennifer T.; Zivkovic, Angela M.

2010-01-01

The field of nanoscience is extending the applications of physics, chemistry and biology into previously unapproached infinitesimal length scales. Understanding the behavior and manipulating the positions and properties of single atoms and molecules hold great potential to improve areas of science as disparate as medicine and computation, and communication and orbiting satellites. Yet, in the race to develop novel, previously unavailable nanoparticles, there is an opportunity for scientists in this field to digress and to apply their growing understanding of nanoscience and the tools of nanotechnology to one of the most pressing problems in all of human biology—diseases related to lipoproteins. Although not appreciated outside the field of lipoprotein biology, variations in the compositions, structures and properties of these nanoscale-sized, blood-borne particles are responsible for most of the variations in health, morbidity and mortality in the Western world. If the lipoproteins could be understood at the nanometer length scale with precise details of their structures and functions, scientists could understand a wide range of perplexing physiological processes and also address the dysfunctions in normal lipoprotein biology that lead to such diseases as hypercholesterolemia, heart disease, stroke and neurodegenerative diseases. Furthermore, if the capabilities of nanoscience to assemble and manipulate nanometer-sized particles could be recruited to studies of lipoproteins, these biological particles would provide a new dimension to therapeutic agents, and these natural particles could be designed to carry out many specialized beneficial tasks. PMID:20592953

Performance of Renormalization Group Algebraic Turbulence Model on Boundary Layer Transition Simulation

NASA Technical Reports Server (NTRS)

Ahn, Kyung H.

1994-01-01

The RNG-based algebraic turbulence model, with a new method of solving the cubic equation and applying new length scales, is introduced. An analysis is made of the RNG length scale which was previously reported and the resulting eddy viscosity is compared with those from other algebraic turbulence models. Subsequently, a new length scale is introduced which actually uses the two previous RNG length scales in a systematic way to improve the model performance. The performance of the present RNG model is demonstrated by simulating the boundary layer flow over a flat plate and the flow over an airfoil.

Slip accumulation and lateral propagation of active normal faults in Afar

NASA Astrophysics Data System (ADS)

Manighetti, I.; King, G. C. P.; Gaudemer, Y.; Scholz, C. H.; Doubre, C.

2001-01-01

We investigate fault growth in Afar, where normal fault systems are known to be currently growing fast and most are propagating to the northwest. Using digital elevation models, we have examined the cumulative slip distribution along 255 faults with lengths ranging from 0.3 to 60 km. Faults exhibiting the elliptical or "bell-shaped" slip profiles predicted by simple linear elastic fracture mechanics or elastic-plastic theories are rare. Most slip profiles are roughly linear for more than half of their length, with overall slopes always <0.035. For the dominant population of NW striking faults and fault systems longer than 2 km, the slip profiles are asymmetric, with slip being maximum near the eastern ends of the profiles where it drops abruptly to zero, whereas slip decreases roughly linearly and tapers in the direction of overall Aden rift propagation. At a more detailed level, most faults appear to be composed of distinct, shorter subfaults or segments, whose slip profiles, while different from one to the next, combine to produce the roughly linear overall slip decrease along the entire fault. On a larger scale, faults cluster into kinematically coupled systems, along which the slip on any scale individual fault or fault system complements that of its neighbors, so that the total slip of the whole system is roughly linearly related to its length, with an average slope again <0.035. We discuss the origin of these quasilinear, asymmetric profiles in terms of "initiation points" where slip starts, and "barriers" where fault propagation is arrested. In the absence of a barrier, slip apparently extends with a roughly linear profile, tapered in the direction of fault propagation.

Collective Emotions Online and Their Influence on Community Life

PubMed Central

Chmiel, Anna; Sienkiewicz, Julian; Thelwall, Mike; Paltoglou, Georgios; Buckley, Kevan; Kappas, Arvid; Hołyst, Janusz A.

2011-01-01

Background E-communities, social groups interacting online, have recently become an object of interdisciplinary research. As with face-to-face meetings, Internet exchanges may not only include factual information but also emotional information – how participants feel about the subject discussed or other group members. Emotions in turn are known to be important in affecting interaction partners in offline communication in many ways. Could emotions in Internet exchanges affect others and systematically influence quantitative and qualitative aspects of the trajectory of e-communities? The development of automatic sentiment analysis has made large scale emotion detection and analysis possible using text messages collected from the web. However, it is not clear if emotions in e-communities primarily derive from individual group members' personalities or if they result from intra-group interactions, and whether they influence group activities. Methodology/Principal Findings Here, for the first time, we show the collective character of affective phenomena on a large scale as observed in four million posts downloaded from Blogs, Digg and BBC forums. To test whether the emotions of a community member may influence the emotions of others, posts were grouped into clusters of messages with similar emotional valences. The frequency of long clusters was much higher than it would be if emotions occurred at random. Distributions for cluster lengths can be explained by preferential processes because conditional probabilities for consecutive messages grow as a power law with cluster length. For BBC forum threads, average discussion lengths were higher for larger values of absolute average emotional valence in the first ten comments and the average amount of emotion in messages fell during discussions. Conclusions/Significance Overall, our results prove that collective emotional states can be created and modulated via Internet communication and that emotional expressiveness is the fuel that sustains some e-communities. PMID:21818302

A Simulation of the Importance of Length of Growing Season and Canopy Functional Properties on the Seasonal Gross Primary Production of Temperate Alpine Meadows

PubMed Central

Baptist, Florence; Choler, Philippe

2008-01-01

Background and Aims Along snowmelt gradients, the canopies of temperate alpine meadows differ strongly in their structural and biochemical properties. Here, a study is made of the effects of these canopy dissimilarities combined with the snow-induced changes in length of growing season on seasonal gross primary production (GPP). Methods Leaf area index (LAI) and community-aggregated values of leaf angle and leaf nitrogen content were estimated for seven alpine plant canopies distributed along a marked snowmelt gradient, and these were used as input variables in a sun–shade canopy bulk-photosynthesis model. The model was validated for plant communities of early and late snowmelt sites by measuring the instantaneous CO2 fluxes with a canopy closed-chamber technique. A sensitivity analysis was conducted to estimate the relative impact of canopy properties and environmental factors on the daily and seasonal GPP. Key Results Carbon uptake was primarily related to the LAI and total canopy nitrogen content, but not to the leaf angle. For a given level of photosynthetically active radiation, CO2 assimilation was higher under overcast conditions. Sensitivity analysis revealed that increase of the length of the growing season had a higher effect on the seasonal GPP than a similar increase of any other factor. It was also found that the observed greater nitrogen content and larger LAI of canopies in late-snowmelt sites largely compensated for the negative impact of the reduced growing season. Conclusions The results emphasize the primary importance of snow-induced changes in length of growing season on carbon uptake in alpine temperate meadows. It was also demonstrated how using leaf-trait values of the dominants is a useful approach for modelling ecosystem carbon-cycle-related processes, particularly when continuous measurements of CO2 fluxes are technically difficult. The study thus represents an important step in addressing the challenge of using a plant functional-trait approach for biogeochemical modelling. PMID:18182383

Photon Transport in One-Dimensional Incommensurately Epitaxial CsPbX 3 Arrays

DOE PAGES

Wang, Yiping; Sun, Xin; Shivanna, Ravichandran; ...

2016-11-16

One-dimensional nanoscale epitaxial arrays serve as a great model in studying fundamental physics and for emerging applications. With an increasing focus laid on the Cs-based inorganic halide perovskite out of its outstanding material stability, we have applied vapor phase epitaxy to grow well aligned horizontal CsPbX 3 (X: Cl, Br, or I or their mixed) nanowire arrays in large scale on mica substrate. The as-grown nanowire features a triangular prism morphology with typical length ranging from a few tens of micrometers to a few millimeters. Structural analysis reveals that the wire arrays follow the symmetry of mica substrate through incommensuratemore » epitaxy, paving a way for a universally applicable method to grow a broad family of halide perovskite materials. We have studied the unique photon transport in the one-dimensional structure in the all-inorganic Cs-based perovskite wires via temperature dependent and spatially resolved photoluminescence. Furthermore, epitaxy of well oriented wire arrays in halide perovskite would be a promising direction for enabling the circuit-level applications of halide perovskite in high-performance electro-optics and optoelectronics.« less

Empirical scaling of the length of the longest increasing subsequences of random walks

NASA Astrophysics Data System (ADS)

Mendonça, J. Ricardo G.

2017-02-01

We provide Monte Carlo estimates of the scaling of the length L n of the longest increasing subsequences of n-step random walks for several different distributions of step lengths, short and heavy-tailed. Our simulations indicate that, barring possible logarithmic corrections, {{L}n}∼ {{n}θ} with the leading scaling exponent 0.60≲ θ ≲ 0.69 for the heavy-tailed distributions of step lengths examined, with values increasing as the distribution becomes more heavy-tailed, and θ ≃ 0.57 for distributions of finite variance, irrespective of the particular distribution. The results are consistent with existing rigorous bounds for θ, although in a somewhat surprising manner. For random walks with step lengths of finite variance, we conjecture that the correct asymptotic behavior of L n is given by \\sqrt{n}\\ln n , and also propose the form for the subleading asymptotics. The distribution of L n was found to follow a simple scaling form with scaling functions that vary with θ. Accordingly, when the step lengths are of finite variance they seem to be universal. The nature of this scaling remains unclear, since we lack a working model, microscopic or hydrodynamic, for the behavior of the length of the longest increasing subsequences of random walks.

Tip vortices in the actuator line model

NASA Astrophysics Data System (ADS)

Martinez, Luis; Meneveau, Charles

2017-11-01

The actuator line model (ALM) is a widely used tool to represent the wind turbine blades in computational fluid dynamics without the need to resolve the full geometry of the blades. The ALM can be optimized to represent the `correct' aerodynamics of the blades by choosing an appropriate smearing length scale ɛ. This appropriate length scale creates a tip vortex which induces a downwash near the tip of the blade. A theoretical frame-work is used to establish a solution to the induced velocity created by a tip vortex as a function of the smearing length scale ɛ. A correction is presented which allows the use of a non-optimal smearing length scale but still provides the downwash which would be induced using the optimal length scale. Thanks to the National Science Foundation (NSF) who provided financial support for this research via Grants IGERT 0801471, IIA-1243482 (the WINDINSPIRE project) and ECCS-1230788.

Entanglement between random and clean quantum spin chains

NASA Astrophysics Data System (ADS)

Juhász, Róbert; Kovács, István A.; Roósz, Gergő; Iglói, Ferenc

2017-08-01

The entanglement entropy in clean, as well as in random quantum spin chains has a logarithmic size-dependence at the critical point. Here, we study the entanglement of composite systems that consist of a clean subsystem and a random subsystem, both being critical. In the composite, antiferromagnetic XX-chain with a sharp interface, the entropy is found to grow in a double-logarithmic fashion {{ S}}∼ \\ln\\ln(L) , where L is the length of the chain. We have also considered an extended defect at the interface, where the disorder penetrates into the homogeneous region in such a way that the strength of disorder decays with the distance l from the contact point as  ∼l-κ . For κ<1/2 , the entropy scales as {{ S}}(κ) ≃ \\frac{\\ln 2 (1-2κ)}{6}{\\ln L} , while for κ ≥slant 1/2 , when the extended interface defect is an irrelevant perturbation, we recover the double-logarithmic scaling. These results are explained through strong-disorder RG arguments.

Orientation of chain molecules in ionotropic gels: a Brownian dynamics model

NASA Astrophysics Data System (ADS)

Woelki, Stefan; Kohler, Hans-Helmut

2003-09-01

As is known from birefringence measurements, polysaccharide molecules of ionotropic gels are preferentially orientated normal to the direction of gel growth. In this paper the orientation effect is investigated by means of an off-lattice Brownian dynamics model simulating the gel formation process. The model describes the integration of a single coarse grained phantom chain into the growing gel. The equations of motion of the chain are derived. The computer simulations show that, during the process of integration, the chain is contracting normal to the direction of gel growth. A scaling relation is obtained for the degree of contraction as a function of the length parameters of the chain, the velocity of the gel formation front and the rate constant of the crosslinking reaction. It is shown that the scaling relation, if applied to the example of ionotropic copper alginate gel, leads to reasonable predictions of the time course of the degree of contraction of the alginate chains.

Gravitational waves from vacuum first-order phase transitions: From the envelope to the lattice

NASA Astrophysics Data System (ADS)

Cutting, Daniel; Hindmarsh, Mark; Weir, David J.

2018-06-01

We conduct large scale numerical simulations of gravitational wave production at a first-order vacuum phase transition. We find a power law for the gravitational wave power spectrum at high wave number which falls off as k-1.5 rather than the k-1 produced by the envelope approximation. The peak of the power spectrum is shifted to slightly lower wave numbers from that of the envelope approximation. The envelope approximation reproduces our results for the peak power less well, agreeing only to within an order of magnitude. After the bubbles finish colliding, the scalar field oscillates around the true vacuum. An additional feature is produced in the UV of the gravitational wave power spectrum, and this continues to grow linearly until the end of our simulation. The additional feature peaks at a length scale close to the bubble wall thickness and is shown to have a negligible contribution to the energy in gravitational waves, providing the scalar field mass is much smaller than the Planck mass.

Instabilities and patterns in an active nematic film

NASA Astrophysics Data System (ADS)

Srivastava, Pragya; Marchetti, Cristina

2015-03-01

Experiments on microtubule bundles confined to an oil-water interface have motivated extensive theoretical studies of two-dimensional active nematics. Theoretical models taking into account the interplay between activity, flow and order have remarkably reproduced several experimentally observed features of the defect-dynamics in these ``living'' nematics. Here, we derive minimal description of a two-dimensional active nematic film confined between walls. At high friction, we eliminate the flow to obtain closed equations for the nematic order parameter, with renormalized Frank elastic constants. Active processes can render the ``Frank'' constants negative, resulting in the instability of the uniformly ordered nematic state. The minimal model yields emergent patterns of growing complexity with increasing activity, including bands and turbulent dynamics with a steady density of topological defects, as obtained with the full hydrodynamic equations. We report on the scaling of the length scales of these patterns and of the steady state number of defects with activity and system size. National Science Foundation grant DMR-1305184 and Syracuse Soft Matter Program.

Solution of the spatial neutral model yields new bounds on the Amazonian species richness

NASA Astrophysics Data System (ADS)

Shem-Tov, Yahav; Danino, Matan; Shnerb, Nadav M.

2017-02-01

Neutral models, in which individual agents with equal fitness undergo a birth-death-mutation process, are very popular in population genetics and community ecology. Usually these models are applied to populations and communities with spatial structure, but the analytic results presented so far are limited to well-mixed or mainland-island scenarios. Here we combine analytic results and numerics to obtain an approximate solution for the species abundance distribution and the species richness for the neutral model on continuous landscape. We show how the regional diversity increases when the recruitment length decreases and the spatial segregation of species grows. Our results are supported by extensive numerical simulations and allow one to probe the numerically inaccessible regime of large-scale systems with extremely small mutation/speciation rates. Model predictions are compared with the findings of recent large-scale surveys of tropical trees across the Amazon basin, yielding new bounds for the species richness (between 13100 and 15000) and the number of singleton species (between 455 and 690).

Engineered Living Materials: Prospects and Challenges for Using Biological Systems to Direct the Assembly of Smart Materials.

PubMed

Nguyen, Peter Q; Courchesne, Noémie-Manuelle Dorval; Duraj-Thatte, Anna; Praveschotinunt, Pichet; Joshi, Neel S

2018-05-01

Vast potential exists for the development of novel, engineered platforms that manipulate biology for the production of programmed advanced materials. Such systems would possess the autonomous, adaptive, and self-healing characteristics of living organisms, but would be engineered with the goal of assembling bulk materials with designer physicochemical or mechanical properties, across multiple length scales. Early efforts toward such engineered living materials (ELMs) are reviewed here, with an emphasis on engineered bacterial systems, living composite materials which integrate inorganic components, successful examples of large-scale implementation, and production methods. In addition, a conceptual exploration of the fundamental criteria of ELM technology and its future challenges is presented. Cradled within the rich intersection of synthetic biology and self-assembling materials, the development of ELM technologies allows the power of biology to be leveraged to grow complex structures and objects using a palette of bio-nanomaterials. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Universality of long-range correlations in expansion randomization systems

NASA Astrophysics Data System (ADS)

Messer, P. W.; Lässig, M.; Arndt, P. F.

2005-10-01

We study the stochastic dynamics of sequences evolving by single-site mutations, segmental duplications, deletions, and random insertions. These processes are relevant for the evolution of genomic DNA. They define a universality class of non-equilibrium 1D expansion-randomization systems with generic stationary long-range correlations in a regime of growing sequence length. We obtain explicitly the two-point correlation function of the sequence composition and the distribution function of the composition bias in sequences of finite length. The characteristic exponent χ of these quantities is determined by the ratio of two effective rates, which are explicitly calculated for several specific sequence evolution dynamics of the universality class. Depending on the value of χ, we find two different scaling regimes, which are distinguished by the detectability of the initial composition bias. All analytic results are accurately verified by numerical simulations. We also discuss the non-stationary build-up and decay of correlations, as well as more complex evolutionary scenarios, where the rates of the processes vary in time. Our findings provide a possible example for the emergence of universality in molecular biology.

Quantum potential induced UV-IR coupling in analogue Hawking radiation: From Bose-Einstein condensates to canonical acoustic black holes

NASA Astrophysics Data System (ADS)

Sarkar, Supratik; Bhattacharyay, A.

2017-09-01

Arising out of a nonlocal nonrelativistic Bose-Einstein condensates (BEC), we present an analogue gravity model up to O (ξ2) accuracy (ξ being the healing length of the condensate) in the presence of the quantum potential term for a canonical acoustic black hole in (3 +1 )D spacetime, where the series solution of the free minimally coupled KG equation for the large-length-scale massive scalar modes is derived. We systematically address the issues of the presence of the quantum potential term being the root cause of a UV-IR coupling between short-wavelength primary modes which are supposedly Hawking-radiated through the sonic horizon and the large-wavelength secondary modes. In the quantum gravity experiments of analogue Hawking radiation within the scope of the laboratory set up, this UV-IR coupling is inevitable, and one cannot get rid of these large-wavelength excitations which would grow over space by gaining energy from the short-wavelength Hawking-radiated modes. We identify the characteristic feature in the growth rate(s) that would distinguish these primary and secondary modes.

Variation in vegetative growth and trichomes in Cannabis sativa L. (Marihuana) in response to enviromental pollution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sharma, G.K.; Mann, S.K.

Four populations of Cannabis sativa L. (marihuana) growing in their native habitat and exposed to different levels of environmental pollution were studied for several leaf morphology and leaf trichome features. Leaf length, petiole length, length and width of central leaflet, and the number of teeth on leaf margin decreased with increase in pollution. Trichome length and trichome density values were found to be higher in populations exposed to higher levels of environmental pollution.

Intracellular chloride ion concentration in differentiating neuronal cell and its role in growing neurite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nakajima, Ken-ichi; Marunaka, Yoshinori; Department of Bio-Ionomics, Kyoto Prefectural University of Medicine, Graduate School of Medical Science, Kyoto 602-8566

Chloride ion (Cl{sup −}) is one of the most abundant anions in our body. Increasing evidence suggests that Cl{sup −} plays fundamental roles in various cellular functions. We have previously reported that electroneutral cation-chloride cotransporters, such as Na{sup +}-K{sup +}-2Cl{sup −} cotransporter 1 (NKCC1) and K{sup +}-Cl{sup −} cotransporter 1 (KCC1), are involved in neurite outgrowth during neuronal differentiation. In the present study, we studied if there is correlation between intracellular Cl{sup −} concentrations ([Cl{sup −}]{sub i}) and the length of growing neurites. We measured [Cl{sup −}]{sub i} in the cell body and growing neurite tips using halide-sensitive fluorescent dyemore » N-(ethoxycarbonylmethyl)-6-methoxyquinolinium bromide (MQAE), revealing that [Cl{sup −}]{sub i} in the tip of growing neurite was higher than that in cell body in a single cell. Importantly, there was a significant positive correlation between the length of growing neurite and [Cl{sup −}]{sub i} in neurite tip. Bumtanide (BMT), an inhibitor of NKCC1, significantly inhibited neurite outgrowth and decreased [Cl{sup −}]{sub i} in neurite tip. The results obtained in the present study and our previous studies together strongly suggest that high [Cl{sup −}]{sub i} in neurite tip region is crucial for efficient neurite outgrowth. - Highlights: • Intracellular Cl{sup −} concentrations ([Cl{sup −}]{sub i}) in the tip of growing neurite is higher than that in cell body in a single cell. • There is a significant positive correlation between the length of growing neurite and [Cl{sup −}]{sub i} in neurite tip. • Bumetanide significantly inhibits neurite outgrowth and decreased [Cl{sup −}]{sub i} in neurite tip. • High [Cl{sup −}]{sub i} in neurite tip region is crucial for efficient neurite outgrowth.« less

Modeling of Ceiling Fire Spread and Thermal Radiation.

DTIC Science & Technology

1981-10-01

under a PMMA ceiling and flame lengths under an inert ceiling are found to be in reasonable agreement with full-scale behavior. Although fire spread...5 3 Flame Lengths under Full-Scale Ceilings 12 4 Correlation of Flame Length under Inert Ceilings 16 5 Correlation of Flame Length under No 234 Model...Ceilings 17 6 Correlation of Flame Length under No B8811 Model Ceilings 18 7 Correlation of Flame Length under No. 223 Model Ceilings 19 8

Natural Length Scales Shape Liquid Phase Continuity in Unsaturated Flows

NASA Astrophysics Data System (ADS)

Assouline, S.; Lehmann, P. G.; Or, D.

2015-12-01

Unsaturated flows supporting soil evaporation and internal drainage play an important role in various hydrologic and climatic processes manifested at a wide range of scales. We study inherent natural length scales that govern these flow processes and constrain the spatial range of their representation by continuum models. These inherent length scales reflect interactions between intrinsic porous medium properties that affect liquid phase continuity, and the interplay among forces that drive and resist unsaturated flow. We have defined an intrinsic length scale for hydraulic continuity based on pore size distribution that controls soil evaporation dynamics (i.e., stage 1 to stage 2 transition). This simple metric may be used to delineate upper bounds for regional evaporative losses or the depth of soil-atmosphere interactions (in the absence of plants). A similar length scale governs the dynamics of internal redistribution towards attainment of field capacity, again through its effect on hydraulic continuity in the draining porous medium. The study provides a framework for guiding numerical and mathematical models for capillary flows across different scales considering the necessary conditions for coexistence of stationarity (REV), hydraulic continuity and intrinsic capillary gradients.

Failure analysis of fuel cell electrodes using three-dimensional multi-length scale X-ray computed tomography

NASA Astrophysics Data System (ADS)

Pokhrel, A.; El Hannach, M.; Orfino, F. P.; Dutta, M.; Kjeang, E.

2016-10-01

X-ray computed tomography (XCT), a non-destructive technique, is proposed for three-dimensional, multi-length scale characterization of complex failure modes in fuel cell electrodes. Comparative tomography data sets are acquired for a conditioned beginning of life (BOL) and a degraded end of life (EOL) membrane electrode assembly subjected to cathode degradation by voltage cycling. Micro length scale analysis shows a five-fold increase in crack size and 57% thickness reduction in the EOL cathode catalyst layer, indicating widespread action of carbon corrosion. Complementary nano length scale analysis shows a significant reduction in porosity, increased pore size, and dramatically reduced effective diffusivity within the remaining porous structure of the catalyst layer at EOL. Collapsing of the structure is evident from the combination of thinning and reduced porosity, as uniquely determined by the multi-length scale approach. Additionally, a novel image processing based technique developed for nano scale segregation of pore, ionomer, and Pt/C dominated voxels shows an increase in ionomer volume fraction, Pt/C agglomerates, and severe carbon corrosion at the catalyst layer/membrane interface at EOL. In summary, XCT based multi-length scale analysis enables detailed information needed for comprehensive understanding of the complex failure modes observed in fuel cell electrodes.

Climatic warming above the Arctic Circle: are there trends in timing and length of the thermal growing season in Murmansk Region (Russia) between 1951 and 2012?

PubMed

Blinova, Ilona; Chmielewski, Frank-Michael

2015-06-01

Anomalies in the timing of the thermal growing season have become obvious in the NE part of Fennoscandia since 2000. They are in accordance with climatic changes reported for Europe and Fennoscandia. The actual length of the growing season reached 120 days on average, onset on 30 May and ending on 27 September (1981-2010). Shifts in the timing of the growing season and its mean prolongation by 18.5 days/62a are demonstrated for Murmansk Region (1951-2012). In this period, the onset of the growing season advanced by 7.1 days/62a, while the end was extended by 11.4 days/62a. The delay in the end of the growing season is similar to the entire Fennoscandian pattern but it has not been detected in the rest of Europe. The regional pattern of climatic regimes in Murmansk Region remained stable in comparison with earlier climatic maps (1971). However, the actual shifts in the timing of the growing season were more pronounced in colder (oceanic and mountainous) parts. Recent climatic trends could influence the retreat of the tundra zone and changes in the forest line. Losses of tundra biodiversity and enrichment of the northern taiga by southern species could be expected from present climatic trends.

ε-Poly-l-Lysine Peptide Chain Length Regulated by the Linkers Connecting the Transmembrane Domains of ε-Poly-l-Lysine Synthetase

PubMed Central

Kito, Naoko; Kita, Akihiro; Imokawa, Yuuki; Yamanaka, Kazuya; Maruyama, Chitose; Katano, Hajime

2014-01-01

ε-Poly-l-lysine (ε-PL), consisting of 25 to 35 l-lysine residues with linkages between the α-carboxyl groups and ε-amino groups, is produced by Streptomyces albulus NBRC14147. ε-PL synthetase (Pls) is a membrane protein with six transmembrane domains (TM1 to TM6) as well as both an adenylation domain and a thiolation domain, characteristic of the nonribosomal peptide synthetases. Pls directly generates ε-PL chain length diversity (25- to 35-mer), but the processes that control the chain length of ε-PL during the polymerization reaction are still not fully understood. Here, we report on the identification of Pls amino acid residues involved in the regulation of the ε-PL chain length. From approximately 12,000 variants generated by random mutagenesis, we found 8 Pls variants that produced shorter chains of ε-PL. These variants have one or more mutations in two linker regions connecting the TM1 and TM2 domains and the TM3 and TM4 domains. In the Pls catalytic mechanism, the growing chain of ε-PL is not tethered to the enzyme, implying that the enzyme must hold the growing chain until the polymerization reaction is complete. Our findings reveal that the linker regions are important contributors to grasp the growing chain of ε-PL. PMID:24907331

Divergent scaling of respiration rates to nitrogen and phosphorus across four woody seedlings between different growing seasons.

PubMed

Fan, Ruirui; Sun, Jun; Yang, Fuchun; Li, Man; Zheng, Yuan; Zhong, Quanlin; Cheng, Dongliang

2017-11-01

Empirical studies indicate that the exponents governing the scaling of plant respiration rates ( R ) with respect to biomass ( M ) numerically vary between three-fourth for adult plants and 1.0 for seedlings and saplings and are affected by nitrogen (N) and phosphorus (P) content. However, whether the scaling of R with respect to M (or N and P) varies among different phylogenetic groups (e.g., gymnosperms vs. angiosperms) or during the growing and dormant seasons remains unclear. We measured the whole-plant R and M , and N and P content of the seedlings of four woody species during the growing season (early October) and the dormant season (January). The data show that (i) the scaling exponents of R versus M , R versus N, and R versus P differed significantly among the four species, but (ii), not between the growing and dormant seasons for each of the four species, although (iii) the normalization constants governing the scaling relationships were numerically greater for the growing season compared to the dormant season. In addition, (iv) the scaling exponents of R versus M , R versus N, and R versus P were numerically larger for the two angiosperm species compared to those of the two gymnosperm species, (v) the interspecific scaling exponents for the four species were greater during the growing season than in the dormant season, and (vi), interspecifically, P scaled nearly isometric with N content. Those findings indicate that the metabolic scaling relationships among R , M , N, and P manifest seasonal variation and differ between angiosperm and gymnosperm species, that is, there is no single, canonical scaling exponent for the seedlings of woody species.

Exact Solutions of Linear Reaction-Diffusion Processes on a Uniformly Growing Domain: Criteria for Successful Colonization

PubMed Central

Simpson, Matthew J

2015-01-01

Many processes during embryonic development involve transport and reaction of molecules, or transport and proliferation of cells, within growing tissues. Mathematical models of such processes usually take the form of a reaction-diffusion partial differential equation (PDE) on a growing domain. Previous analyses of such models have mainly involved solving the PDEs numerically. Here, we present a framework for calculating the exact solution of a linear reaction-diffusion PDE on a growing domain. We derive an exact solution for a general class of one-dimensional linear reaction—diffusion process on 0

Exact solutions of linear reaction-diffusion processes on a uniformly growing domain: criteria for successful colonization.

PubMed

Simpson, Matthew J

2015-01-01

Many processes during embryonic development involve transport and reaction of molecules, or transport and proliferation of cells, within growing tissues. Mathematical models of such processes usually take the form of a reaction-diffusion partial differential equation (PDE) on a growing domain. Previous analyses of such models have mainly involved solving the PDEs numerically. Here, we present a framework for calculating the exact solution of a linear reaction-diffusion PDE on a growing domain. We derive an exact solution for a general class of one-dimensional linear reaction-diffusion process on 0

Elevated CO2 further lengthens growing season under warming conditions.

PubMed

Reyes-Fox, Melissa; Steltzer, Heidi; Trlica, M J; McMaster, Gregory S; Andales, Allan A; LeCain, Dan R; Morgan, Jack A

2014-06-12

Observations of a longer growing season through earlier plant growth in temperate to polar regions have been thought to be a response to climate warming. However, data from experimental warming studies indicate that many species that initiate leaf growth and flowering earlier also reach seed maturation and senesce earlier, shortening their active and reproductive periods. A conceptual model to explain this apparent contradiction, and an analysis of the effect of elevated CO2--which can delay annual life cycle events--on changing season length, have not been tested. Here we show that experimental warming in a temperate grassland led to a longer growing season through earlier leaf emergence by the first species to leaf, often a grass, and constant or delayed senescence by other species that were the last to senesce, supporting the conceptual model. Elevated CO2 further extended growing, but not reproductive, season length in the warmed grassland by conserving water, which enabled most species to remain active longer. Our results suggest that a longer growing season, especially in years or biomes where water is a limiting factor, is not due to warming alone, but also to higher atmospheric CO2 concentrations that extend the active period of plant annual life cycles.

Λ(t)CDM model as a unified origin of holographic and agegraphic dark energy models

NASA Astrophysics Data System (ADS)

Chen, Yun; Zhu, Zong-Hong; Xu, Lixin; Alcaniz, J. S.

2011-04-01

Motivated by the fact that any nonzero Λ can introduce a length scale or a time scale into Einstein's theory, r=ct=3/|Λ|. Conversely, any cosmological length scale or time scale can introduce a Λ(t), Λ(t)=3/rΛ2(t)=3/(c2tΛ2(t)). In this Letter, we investigate the time varying Λ(t) corresponding to the length scales, including the Hubble horizon, the particle horizon and the future event horizon, and the time scales, including the age of the universe and the conformal time. It is found out that, in this scenario, the Λ(t)CDM model can be taken as the unified origin of the holographic and agegraphic dark energy models with interaction between the matter and the dark energy, where the interacting term is determined by Q=-ρ. We place observational constraints on the Λ(t)CDM models originating from different cosmological length scales and time scales with the recently compiled “Union2 compilation” which consists of 557 Type Ia supernovae (SNIa) covering a redshift range 0.015⩽z⩽1.4. In conclusion, an accelerating expansion universe can be derived in the cases taking the Hubble horizon, the future event horizon, the age of the universe and the conformal time as the length scale or the time scale.

Similarity and Scale Invariance of Velocity and Temperature Structure Functions within and above Dense Canopies

NASA Astrophysics Data System (ADS)

Ghannam, K.; Katul, G. G.; Chamecki, M.

2016-12-01

The scale-wise properties of turbulent flow statistics are conventionally quantified using the structure function D_ss (r)= <〖(Δs)〗^2 > describing velocity (s=u) or scalar (s=c) concentration increments Δs=s(x+r)-s(x) at various scales or separation distances r, where <.> is Reynolds averaging over coordinates of statistical homogeneity. For locally homogeneous and isotropic turbulence, the structure function can unfold statistical invariance of the form D_ss (βr)=β^p D_ss (r) as has been demonstrated by Kolmogorov's theory for the inertial subrange in the absence of intermittency corrections. For scales larger than inertial, scale invariance need not hold though universal scaling properties can still emerge provided an appropriate length and velocity scales are identified. One recent study on the structure function of the streamwise velocity (s=u) in smooth and rough wall-bounded flows argued that a logarithmic scaling of the form D_ss/(u_*^2 )=A+B ln(r/l_ɛ ) exists at any height z above the wall (or roughness elements), with,l_ɛ,〖 u〗_*, A and B being a dissipation length scale, the friction velocity, and two similarity constants to be determined. Whether this scaling is valid across all atmospheric stability regimes in the roughness sublayer (RSL) and the possible co-existence of length scales other than l_ɛ that collapse D_ss (r) for velocity and temperature frames the scope of this work. Using year-round field measurements within and above an Amazonian canopy, the work here explores the aforementioned scaling for the streamwise (s=u) and vertical velocity (s=w) components, along with its extension to active scalars (s=T, the air temperature) inside canopies and in the RSL above canopies. While the premise is that a length scale such as l_ɛ may serve as a master closure length scale for turbulent momentum and heat flux budgets, the role of the vorticity thickness, the Obukhov length, the adjustment length scale, and height z are also explored for various scale (or r) regimes. Because the RSL blends D_ss (r) from its form inside the canopy to its form in the well-studied atmospheric surface layer, the scaling laws derived here offer a new perspective on the thickness of the RSL for momentum and scalars and its variations with atmospheric stability.

Constant Stress Drop Fits Earthquake Surface Slip-Length Data

NASA Astrophysics Data System (ADS)

Shaw, B. E.

2011-12-01

Slip at the surface of the Earth provides a direct window into the earthquake source. A longstanding controversy surrounds the scaling of average surface slip with rupture length, which shows the puzzling feature of continuing to increase with rupture length for lengths many times the seismogenic width. Here we show that a more careful treatment of how ruptures transition from small circular ruptures to large rectangular ruptures combined with an assumption of constant stress drop provides a new scaling law for slip versus length which (1) does an excellent job fitting the data, (2) gives an explanation for the large crossover lengthscale at which slip begins to saturate, and (3) supports constant stress drop scaling which matches that seen for small earthquakes. We additionally discuss how the new scaling can be usefully applied to seismic hazard estimates.

Human climbing with efficiently scaled gecko-inspired dry adhesives.

PubMed

Hawkes, Elliot W; Eason, Eric V; Christensen, David L; Cutkosky, Mark R

2015-01-06

Since the discovery of the mechanism of adhesion in geckos, many synthetic dry adhesives have been developed with desirable gecko-like properties such as reusability, directionality, self-cleaning ability, rough surface adhesion and high adhesive stress. However, fully exploiting these adhesives in practical applications at different length scales requires efficient scaling (i.e. with little loss in adhesion as area grows). Just as natural gecko adhesives have been used as a benchmark for synthetic materials, so can gecko adhesion systems provide a baseline for scaling efficiency. In the tokay gecko (Gekko gecko), a scaling power law has been reported relating the maximum shear stress σmax to the area A: σmax ∝ A(-1/4). We present a mechanical concept which improves upon the gecko's non-uniform load-sharing and results in a nearly even load distribution over multiple patches of gecko-inspired adhesive. We created a synthetic adhesion system incorporating this concept which shows efficient scaling across four orders of magnitude of area, yielding an improved scaling power law: σmax ∝ A(-1/50). Furthermore, we found that the synthetic adhesion system does not fail catastrophically when a simulated failure is induced on a portion of the adhesive. In a practical demonstration, the synthetic adhesion system enabled a 70 kg human to climb vertical glass with 140 cm(2) of adhesive per hand. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Driven, underdamped Frenkel-Kontorova model on a quasiperiodic substrate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vanossi, A.; Ro''der, J.; Bishop, A. R.

2001-01-01

We consider the underdamped dynamics of a chain of atoms subject to a dc driving force and a quasiperiodic substrate potential. The system has three inherent length scales which we take to be mutually incommensurate. We find that when the length scales are related by the spiral mean (a cubic irrational) there exists a value of the interparticle interaction strength above which the static friction is zero. When the length scales are related by the golden mean (a quadratic irrational) the static friction is always nonzero. >From considerations based on the connection of this problem to standard map theory, wemore » postulate that zero static friction is generally possible for incommensurate ratios of the length scales involved. However, when the length scales are quadratic irrationals, or have some commensurability with each other, the static friction will be nonzero for all choices of interaction parameters. We also comment on the nature of the depinning mechanisms and the steady states achieved by the moving chain.« less

Brillouin Scattering of Picosecond Laser Pulses in Preformed, Short-Scale-Length Plasmas

NASA Astrophysics Data System (ADS)

Gaeris, A. C.; Fisher, Y.; Delettrez, J. A.; Meyerhofer, D. D.

1996-11-01

Brillouin scattering (BS) has been studied in short-scale-length, preformed plasmas. The backscattered and specularly reflected light resulting from the interaction of high-power picosecond pulses with preformed silicon plasmas has been measured. A first laser pulse forms a short-scale-length plasma -- without significant BS -- while a second delayed pulse interacts with an expanded, drifting underdense region of the plasma with density scale length (0 <= Ln <= 600 λ _L). The pulses are generated at λ L = 1054 nm, with intensities up to 10^16 W/cm^2. The backscattered light spectra, threshold intensities, and enhanced reflectivities have been determined for different plasma-density scale lengths and are compared to Liu, Rosenbluth, and White's(C. S. Liu, M. N. Rosenbluth, and R. B. White, Phys. Fluids 17, 1211 (1974).) WKB treatment of stimulated Brillouin scattering in inhomogeneous drifting plasmas. This work was supported by the U.S. Department of Energy Office of Inertial Confinement Fusion under Cooperative Agreement No. DE-FC03-92SF19460.

Experiments on integral length scale control in atmospheric boundary layer wind tunnel

NASA Astrophysics Data System (ADS)

Varshney, Kapil; Poddar, Kamal

2011-11-01

Accurate predictions of turbulent characteristics in the atmospheric boundary layer (ABL) depends on understanding the effects of surface roughness on the spatial distribution of velocity, turbulence intensity, and turbulence length scales. Simulation of the ABL characteristics have been performed in a short test section length wind tunnel to determine the appropriate length scale factor for modeling, which ensures correct aeroelastic behavior of structural models for non-aerodynamic applications. The ABL characteristics have been simulated by using various configurations of passive devices such as vortex generators, air barriers, and slot in the test section floor which was extended into the contraction cone. Mean velocity and velocity fluctuations have been measured using a hot-wire anemometry system. Mean velocity, turbulence intensity, turbulence scale, and power spectral density of velocity fluctuations have been obtained from the experiments for various configuration of the passive devices. It is shown that the integral length scale factor can be controlled using various combinations of the passive devices.

Reynolds number scaling of straining motions in turbulence

NASA Astrophysics Data System (ADS)

Elsinga, Gerrit; Ishihara, T.; Goudar, M. V.; da Silva, C. B.; Hunt, J. C. R.

2017-11-01

Strain is an important fluid motion in turbulence as it is associated with the kinetic energy dissipation rate, vorticity stretching, and the dispersion of passive scalars. The present study investigates the scaling of the turbulent straining motions by evaluating the flow in the eigenframe of the local strain-rate tensor. The analysis is based on DNS of homogeneous isotropic turbulence covering a Reynolds number range Reλ = 34.6 - 1131. The resulting flow pattern reveals a shear layer containing tube-like vortices and a dissipation sheet, which both scale on the Kolmogorov length scale, η. The vorticity stretching motions scale on the Taylor length scale, while the flow outside the shear layer scales on the integral length scale. These scaling results are consistent with those in wall-bounded flow, which suggests a quantitative universality between the different flows. The overall coherence length of the vorticity is 120 η in all directions, which is considerably larger than the typical size of individual vortices, and reflects the importance of spatial organization at the small scales. Transitions in flow structure are identified at Reλ 45 and 250. Below these respective Reynolds numbers, the small-scale motions and the vorticity stretching motions appear underdeveloped.

Scaling relationships of twig biomass allocation in Pinus hwangshanensis along an altitudinal gradient

PubMed Central

Li, Man; Zheng, Yuan; Fan, RuiRui; Zhong, QuanLin; Cheng, DongLiang

2017-01-01

Understanding the response of biomass allocation in twigs (the terminal branches of current-year shoots) to environmental change is crucial for elucidating forest ecosystem carbon storage, carbon cycling, and plant life history strategies under a changing climate. On the basis of interspecies investigations of broad-leaved plants, previous studies have demonstrated that plants respond to environmental factors by allocating biomass in an allometric manner between support tissues (i.e., stems) and the leaf biomass of twigs, where the scaling exponent (i.e., slope of a log—log linear relationship, α) is constant, and the scaling constant (i.e., intercept of a log—log linear relationship, log β) varies with respect to environmental factors. However, little is known about whether the isometric scaling exponents of such biomass allocations remain invariant for single species, particularly conifers, at different altitudes and in different growing periods. In this study, we investigated how twig biomass allocation varies with elevation and period among Pinus hwangshanensis Hsia trees growing in the mountains of Southeast China. Specifically, we explored how twig stem mass, needle mass, and needle area varied throughout the growing period (early, mid-, late) and at three elevations in the Wuyi Mountains. Standardized major axis analysis was used to compare the scaling exponents and scaling constants between the biomass allocations of within-twig components. Scaling relationships between these traits differed with growing period and altitude gradient. During the different growing periods, there was an isometric scaling relationship, with a common slope of 1.0 (i.e., α ≈ 1.0), between needle mass and twig mass (the sum of the total needle mass and the stem mass), whereas there were allometric scaling relationships between the stem mass and twig mass and between the needle mass and stem mass of P. hwangshanensis. The scaling constants (log β) for needle mass vs. twig mass and for needle mass vs. stem mass increased progressively across the growing stages, whereas the scaling constants of stem mass vs. twig mass showed the opposite pattern. The scaling exponents (α) of needle area with respect to needle biomass increased significantly with growing period, changing from an allometric relationship (i.e., α < 1.0) during the early growing period to a nearly isometric relationship (i.e., α ≈ 1.0) during the late growing period. This change possibly reflects the functional adaptation of twigs in different growing periods to meet their specific reproductive or survival needs. At different points along the altitudinal gradient, the relationships among needle mass, twig mass, and stem mass were all isometric (i.e., α ≈ 1.0). Moreover, significant differences were found in scaling constants (log β) along the altitudinal gradient, such that species had a smaller stem biomass but a relatively larger needle mass at low altitude. In addition, the scaling exponents remained numerically invariant among all three altitudes, with a common slope of 0.8, suggesting that needle area failed to keep pace with the increasing needle mass at different altitudes. Our results indicated that the twig biomass allocation pattern was significantly influenced by altitude and growing period, which reflects the functional adaptation of twigs to meet their specific survival needs under different climatic conditions. PMID:28552954

Scaling relationships of twig biomass allocation in Pinus hwangshanensis along an altitudinal gradient.

PubMed

Li, Man; Zheng, Yuan; Fan, RuiRui; Zhong, QuanLin; Cheng, DongLiang

2017-01-01

Understanding the response of biomass allocation in twigs (the terminal branches of current-year shoots) to environmental change is crucial for elucidating forest ecosystem carbon storage, carbon cycling, and plant life history strategies under a changing climate. On the basis of interspecies investigations of broad-leaved plants, previous studies have demonstrated that plants respond to environmental factors by allocating biomass in an allometric manner between support tissues (i.e., stems) and the leaf biomass of twigs, where the scaling exponent (i.e., slope of a log-log linear relationship, α) is constant, and the scaling constant (i.e., intercept of a log-log linear relationship, log β) varies with respect to environmental factors. However, little is known about whether the isometric scaling exponents of such biomass allocations remain invariant for single species, particularly conifers, at different altitudes and in different growing periods. In this study, we investigated how twig biomass allocation varies with elevation and period among Pinus hwangshanensis Hsia trees growing in the mountains of Southeast China. Specifically, we explored how twig stem mass, needle mass, and needle area varied throughout the growing period (early, mid-, late) and at three elevations in the Wuyi Mountains. Standardized major axis analysis was used to compare the scaling exponents and scaling constants between the biomass allocations of within-twig components. Scaling relationships between these traits differed with growing period and altitude gradient. During the different growing periods, there was an isometric scaling relationship, with a common slope of 1.0 (i.e., α ≈ 1.0), between needle mass and twig mass (the sum of the total needle mass and the stem mass), whereas there were allometric scaling relationships between the stem mass and twig mass and between the needle mass and stem mass of P. hwangshanensis. The scaling constants (log β) for needle mass vs. twig mass and for needle mass vs. stem mass increased progressively across the growing stages, whereas the scaling constants of stem mass vs. twig mass showed the opposite pattern. The scaling exponents (α) of needle area with respect to needle biomass increased significantly with growing period, changing from an allometric relationship (i.e., α < 1.0) during the early growing period to a nearly isometric relationship (i.e., α ≈ 1.0) during the late growing period. This change possibly reflects the functional adaptation of twigs in different growing periods to meet their specific reproductive or survival needs. At different points along the altitudinal gradient, the relationships among needle mass, twig mass, and stem mass were all isometric (i.e., α ≈ 1.0). Moreover, significant differences were found in scaling constants (log β) along the altitudinal gradient, such that species had a smaller stem biomass but a relatively larger needle mass at low altitude. In addition, the scaling exponents remained numerically invariant among all three altitudes, with a common slope of 0.8, suggesting that needle area failed to keep pace with the increasing needle mass at different altitudes. Our results indicated that the twig biomass allocation pattern was significantly influenced by altitude and growing period, which reflects the functional adaptation of twigs to meet their specific survival needs under different climatic conditions.

Influence of Turbulent Flow and Fractal Scaling on Effective Permeability of Fracture Network

NASA Astrophysics Data System (ADS)

Zhu, J.

2017-12-01

A new approach is developed to calculate hydraulic gradient dependent effective permeability of a fractal fracture network where both laminar and turbulent flows may occur in individual fractures. A critical fracture length is used to distinguish flow characteristics in individual fractures. The developed new solutions can be used for the case of a general scaling relationship, an extension to the linear scaling. We examine the impact on the effective permeability of the network of fractal fracture network characteristics, which include the fractal scaling coefficient and exponent, fractal dimension, ratio of minimum over maximum fracture lengths. Results demonstrate that the developed solution can explain more variations of the effective permeability in relation to the fractal dimensions estimated from the field observations. At high hydraulic gradient the effective permeability decreases with the fractal scaling exponent, but increases with the fractal scaling exponent at low gradient. The effective permeability increases with the scaling coefficient, fractal dimension, fracture length ratio and maximum fracture length.

End-monomer Dynamics in Semiflexible Polymers

PubMed Central

Hinczewski, Michael; Schlagberger, Xaver; Rubinstein, Michael; Krichevsky, Oleg; Netz, Roland R.

2009-01-01

Spurred by an experimental controversy in the literature, we investigate the end-monomer dynamics of semiflexible polymers through Brownian hydrodynamic simulations and dynamic mean-field theory. Precise experimental observations over the last few years of end-monomer dynamics in the diffusion of double-stranded DNA have given conflicting results: one study indicated an unexpected Rouse-like scaling of the mean squared displacement (MSD) 〈r2(t)〉 ~ t1/2 at intermediate times, corresponding to fluctuations at length scales larger than the persistence length but smaller than the coil size; another study claimed the more conventional Zimm scaling 〈r2(t)〉 ~ t2/3 in the same time range. Using hydrodynamic simulations, analytical and scaling theories, we find a novel intermediate dynamical regime where the effective local exponent of the end-monomer MSD, α(t) = d log〈r2(t)〉/d log t, drops below the Zimm value of 2/3 for sufficiently long chains. The deviation from the Zimm prediction increases with chain length, though it does not reach the Rouse limit of 1/2. The qualitative features of this intermediate regime, found in simulations and in an improved mean-field theory for semiflexible polymers, in particular the variation of α(t) with chain and persistence lengths, can be reproduced through a heuristic scaling argument. Anomalously low values of the effective exponent α are explained by hydrodynamic effects related to the slow crossover from dynamics on length scales smaller than the persistence length to dynamics on larger length scales. PMID:21359118

A Fictitious Domain Method for Resolving the Interaction of Blood Flow with Clot Growth

NASA Astrophysics Data System (ADS)

Mukherjee, Debanjan; Shadden, Shawn

2016-11-01

Thrombosis and thrombo-embolism cause a range of diseases including heart attack and stroke. Closer understanding of clot and blood flow mechanics provides valuable insights on the etiology, diagnosis, and treatment of thrombotic diseases. Such mechanics are complicated, however, by the discrete and multi-scale phenomena underlying thrombosis, and the complex interactions of unsteady, pulsatile hemodynamics with a clot of arbitrary shape and microstructure. We have developed a computational technique, based on a fictitious domain based finite element method, to study these interactions. The method can resolve arbitrary clot geometries, and dynamically couple fluid flow with static or growing clot boundaries. Macroscopic thrombus-hemodynamics interactions were investigated within idealized vessel geometries representative of the common carotid artery, with realistic unsteady flow profiles as inputs. The method was also employed successfully to resolve micro-scale interactions using a model driven by in-vivo morphology data. The results provide insights into the flow structures and hemodynamic loading around an arbitrarily grown clot at arterial length-scales, as well as flow and transport within the interstices of platelet aggregates composing the clot. The work was supported by AHA Award No: 16POST27500023.

Art on the Nanoscale and Beyond.

PubMed

Yetisen, Ali K; Coskun, Ahmet F; England, Grant; Cho, Sangyeon; Butt, Haider; Hurwitz, Jonty; Kolle, Mathias; Khademhosseini, Ali; Hart, A John; Folch, Albert; Yun, Seok Hyun

2016-03-02

Methods of forming and patterning materials at the nano- and microscales are finding increased use as a medium of artistic expression, and as a vehicle for communicating scientific advances to a broader audience. While sharing many attributes of other art forms, miniaturized art enables the direct engagement of sensory aspects such as sight and touch for materials and structures that are otherwise invisible to the eye. The historical uses of nano-/microscale materials and imaging techniques in arts and sciences are presented. The motivations to create artwork at small scales are discussed, and representations in scientific literature and exhibitions are explored. Examples are presented using semiconductors, microfluidics, and nanomaterials as the artistic media; these utilized techniques including micromachining, focused ion beam milling, two-photon polymerization, and bottom-up nanostructure growth. Finally, the technological factors that limit the implementation of artwork at miniature scales are identified, and potential future directions are discussed. As research marches toward even smaller length scales, innovative and engaging visualizations and artistic endeavors will have growing implications on education, communication, policy making, media activism, and public perception of science and technology. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Electrical properties of 0.4 cm long single walled nanotubes

NASA Astrophysics Data System (ADS)

Yu, Zhen

2005-03-01

Centimeter scale aligned carbon nanotube arrays are grown from nanoparticle/metal catalyst pads[1]. We find the nanotubes grow both with and ``against the wind.'' A metal underlayer provides in-situ electrical contact to these long nanotubes with no post growth processing needed. Using the electrically contacted nanotubes, we study electrical transport of 0.4 cm long nanotubes[2]. Using this data, we are able to determine the resistance of a nanotube as a function of length quantitatively, since the contact resistance is negligible in these long nanotubes. The source drain I-V curves are quantitatively described by a classical, diffusive model. Our measurements show that the outstanding transport properties of nanotubes can be extended to the cm scale and open the door to large scale integrated nanotube circuits with macroscopic dimensions. These are the longest electrically contacted single walled nanotubes measured to date. [1] Zhen Yu, Shengdong Li, Peter J. Burke, ``Synthesis of Aligned Arrays of Millimeter Long, Straight Single-Walled Carbon Nanotubes,'' Chemistry of Materials, 16(18), 3414-3416 (2004). [2] Shengdong Li, Zhen Yu, Christopher Rutherglen, Peter J. Burke, ``Electrical properties of 0.4 cm long single-walled carbon nanotubes'' Nano Letters, 4(10), 2003-2007 (2004).

Experimental evidence for an absorbing phase transition underlying yielding of a soft glass

NASA Astrophysics Data System (ADS)

Nagamanasa, K. Hima; Gokhale, Shreyas; Sood, A. K.; Ganapathy, Rajesh

2014-03-01

A characteristic feature of solids ranging from foams to atomic crystals is the existence of a yield point, which marks the threshold stress beyond which a material undergoes plastic deformation. In hard materials, it is well-known that local yield events occur collectively in the form of intermittent avalanches. The avalanche size distributions exhibit power-law scaling indicating the presence of self-organized criticality. These observations led to predictions of a non-equilibrium phase transition at the yield point. By contrast, for soft solids like gels and dense suspensions, no such predictions exist. In the present work, by combining particle scale imaging with bulk rheology, we provide a direct evidence for a non-equilibrium phase transition governing yielding of an archetypal soft solid - a colloidal glass. The order parameter and the relaxation time exponents revealed that yielding is an absorbing phase transition that belongs to the conserved directed percolation universality class. We also identified a growing length scale associated with clusters of particles with high Debye-Waller factor. Our findings highlight the importance of correlations between local yield events and may well stimulate the development of a unified description of yielding of soft solids.

The Effect of Agricultural Growing Season Change on Market Prices in Africa

NASA Technical Reports Server (NTRS)

deBeurs, K.M.; Brown, M. E.

2013-01-01

Local agricultural production is a key element of food security in many agricultural countries in Africa. Climate change and variability is likely to adversely affect these countries, particularly as they affect the ability of smallholder farmers to raise enough food to feed themselves. Seasonality influences farmers' decisions about when to sow and harvest, and ultimately the success or failure of their crops. At a 2009 conference in the United Kingdom hosted by the Institute of Development Studies, Jennings and Magrath (2009) described farmer reports from East Asia, South Asia, Southern Africa, East Africa and Latin America. Farmers indicate significant changes in the timing of rainy seasons and the pattern of rains within seasons, including: More erratic rainfall, coming at unexpected times in and out of season; Extreme storms and unusually intense rainfall are punctuated by longer dry spells within the rainy season; Increasing uncertainty as to the start of rainy seasons in many areas; Short or transitional second rainy seasons are becoming stronger than normal or are disappearing altogether. These farmer perceptions of change are striking in that they are geographically widespread and are remarkably consistent across diverse regions (Jennings and Magrath, 2009). The impact of these changes on farmers with small plots and few resources is large. Farming is becoming riskier because of heat stress, lack of water, pests and diseases that interact with ongoing pressures on natural resources. Lack of predictability in the start and length of the growing season affects the ability of farmers to invest in appropriate fertilizer levels or improved, high yielding varieties. These changes occur at the same time as the demand for food is rising and is projected to continue to rise for the next fifty years (IAASTD, 2008). Long-term data records derived from satellite remote sensing can be used to verify these reports, providing necessary analysis and documentation required to plan effective adaptation strategies. Remote sensing data can also provide some understanding of the spatial extent of these changes and whether they are likely to continue. Given the agricultural nature of most economies on the African continent, agricultural production continues to be a critical determinant of both food security and economic growth (Funk and Brown, 2009). Crop phenological parameters, such as the start and end of the growing season, the total length of the growing season, and the rate of greening and senescence are important for planning crop management, crop diversification, and intensification. The World Food Summit of 1996 defined food security as: "when all people at all times have access to sufficient, safe, nutritious food to maintain a healthy and active life". Food security roughly depends on three factors: 1) availability of food; 2) access to food and 3) appropriate use of food, as well as adequate water and sanitation. The first factor is dependent on growing conditions and weather and climate. In a previous paper we have investigated this factor by evaluating the effect of large scale climate oscillation on land surface phenology (Brown et al., 2010). We found that all areas in Africa are significantly affected by at least one type of large scale climate oscillations and concluded that these somewhat predictable oscillations could perhaps be used to forecast agricultural production. In addition, we have evaluated changes in agricultural land surface phenology over time (Brown et al., 2012). We found that land surface phenology models, which link large-scale vegetation indices with accumulated humidity, could successfully predict agricultural productivity in several countries around the world. In this chapter we are interested in the effect of variability in peak timing of the growing season, or phenology, on the second factor of food security, food access. In this chapter we want to determine if there is a link between market prices and land surface phenology and to determine which markets are vulnerable to land surface phenology changes and variability and which market prices are not correlated.

The effect of butterfly-scale inspired patterning on leading-edge vortex growth

NASA Astrophysics Data System (ADS)

Wilroy, Jacob Aaron

Leading edge vortices (LEVs) are important for generating thrust and lift in flapping flight, and the surface patterning (scales) on butterfly wings is hypothesized to play a role in the vortex formation of the LEV. To simplify this complex flow problem, an experiment was designed to focus on the alteration of 2-D vortex development with a variation in surface patterning. Specifically, the secondary vorticity generated by the LEV interacting at the patterned surface was studied, as well as the subsequent effect on the LEV's growth rate and peak circulation. For this experiment, rapid-prototyped grooves based on the scale geometry of the Monarch butterfly (Danaus plexippus) were created using additive manufacturing and were attached to a flat plate with a chordwise orientation, thus increasing plate surface area. The vortex generated by the grooved plate was then compared to a smooth plate case in an experiment where the plate translated vertically through a 2 x 3 x 5 cubic foot tow tank. The plate was impulsively started in quiescent water and flow fields at Rec = 1416, 2833, and 5667 are examined using Digital Particle Image Velocimetry (DPIV). The maximum vortex formation number is 2.8 and is based on the flat plate travel length and chord length. Flow fields from each case show the generation of a secondary vortex whose interaction with the shear layer and LEV caused different behaviors depending upon the surface type. The vortex development process varied for each Reynolds number and it was found that for the lowest Reynolds number case a significant difference does not exist between surface types, however, for the other two cases the grooves affected the secondary vortex's behavior and the LEV's ability to grow at a rate similar to the smooth plate case.

Tree differences in primary and secondary growth drive convergent scaling in leaf area to sapwood area across Europe.

PubMed

Petit, Giai; von Arx, Georg; Kiorapostolou, Natasa; Lechthaler, Silvia; Prendin, Angela Luisa; Anfodillo, Tommaso; Caldeira, Maria C; Cochard, Hervé; Copini, Paul; Crivellaro, Alan; Delzon, Sylvain; Gebauer, Roman; Gričar, Jožica; Grönholm, Leila; Hölttä, Teemu; Jyske, Tuula; Lavrič, Martina; Lintunen, Anna; Lobo-do-Vale, Raquel; Peltoniemi, Mikko; Peters, Richard L; Robert, Elisabeth M R; Roig Juan, Sílvia; Senfeldr, Martin; Steppe, Kathy; Urban, Josef; Van Camp, Janne; Sterck, Frank

2018-06-01

Trees scale leaf (A L ) and xylem (A X ) areas to couple leaf transpiration and carbon gain with xylem water transport. Some species are known to acclimate in A L  : A X balance in response to climate conditions, but whether trees of different species acclimate in A L  : A X in similar ways over their entire (continental) distributions is unknown. We analyzed the species and climate effects on the scaling of A L vs A X in branches of conifers (Pinus sylvestris, Picea abies) and broadleaved (Betula pendula, Populus tremula) sampled across a continental wide transect in Europe. Along the branch axis, A L and A X change in equal proportion (isometric scaling: b ˜ 1) as for trees. Branches of similar length converged in the scaling of A L vs A X with an exponent of b = 0.58 across European climates irrespective of species. Branches of slow-growing trees from Northern and Southern regions preferentially allocated into new leaf rather than xylem area, with older xylem rings contributing to maintaining total xylem conductivity. In conclusion, trees in contrasting climates adjust their functional balance between water transport and leaf transpiration by maintaining biomass allocation to leaves, and adjusting their growth rate and xylem production to maintain xylem conductance. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Laser powder bed fusion additive manufacturing of metals; physics, computational, and materials challenges

NASA Astrophysics Data System (ADS)

King, W. E.; Anderson, A. T.; Ferencz, R. M.; Hodge, N. E.; Kamath, C.; Khairallah, S. A.; Rubenchik, A. M.

2015-12-01

The production of metal parts via laser powder bed fusion additive manufacturing is growing exponentially. However, the transition of this technology from production of prototypes to production of critical parts is hindered by a lack of confidence in the quality of the part. Confidence can be established via a fundamental understanding of the physics of the process. It is generally accepted that this understanding will be increasingly achieved through modeling and simulation. However, there are significant physics, computational, and materials challenges stemming from the broad range of length and time scales and temperature ranges associated with the process. In this paper, we review the current state of the art and describe the challenges that need to be met to achieve the desired fundamental understanding of the physics of the process.

Biomedical Applications of Untethered Mobile Milli/Microrobots

PubMed Central

Sitti, Metin; Ceylan, Hakan; Hu, Wenqi; Giltinan, Joshua; Turan, Mehmet; Yim, Sehyuk; Diller, Eric

2016-01-01

Untethered robots miniaturized to the length scale of millimeter and below attract growing attention for the prospect of transforming many aspects of health care and bioengineering. As the robot size goes down to the order of a single cell, previously inaccessible body sites would become available for high-resolution in situ and in vivo manipulations. This unprecedented direct access would enable an extensive range of minimally invasive medical operations. Here, we provide a comprehensive review of the current advances in biome dical untethered mobile milli/microrobots. We put a special emphasis on the potential impacts of biomedical microrobots in the near future. Finally, we discuss the existing challenges and emerging concepts associated with designing such a miniaturized robot for operation inside a biological environment for biomedical applications. PMID:27746484

Shear-transformation-zone theory of yielding in athermal amorphous materials

DOE PAGES

Langer, J. S.

2015-07-22

Yielding transitions in athermal amorphous materials undergoing steady-state shear flow resemble critical phenomena. Historically, they have been described by the Herschel-Bulkley rheological formula, which implies singular behaviors at yield points. In this paper, I examine this class of phenomena using an elementary version of the thermodynamic shear-transformation-zone (STZ) theory, focusing on the role of the effective disorder temperature, and paying special attention to scaling and dimensional arguments. I find a wide variety of Herschel-Bulkley-like rheologies but, for fundamental reasons not specific to the STZ theory, conclude that the yielding transition is not truly critical. Specifically, for realistic many-body models withmore » short-range interactions, there is a correlation length that grows rapidly but ultimately saturates near the yield point.« less

Finite upper bound for the Hawking decay time of an arbitrarily large black hole in anti-de Sitter spacetime

NASA Astrophysics Data System (ADS)

Page, Don N.

2018-01-01

In an asymptotically flat spacetime of dimension d >3 and with the Newtonian gravitational constant G , a spherical black hole of initial horizon radius rh and mass M ˜rhd -3/G has a total decay time to Hawking emission of td˜rhd -1/G ˜G2 /(d -3 )M(d -1 )/(d -3 ) which grows without bound as the radius rh and mass M are taken to infinity. However, in asymptotically anti-de Sitter spacetime with a length scale ℓ and with absorbing boundary conditions at infinity, the total Hawking decay time does not diverge as the mass and radius go to infinity but instead remains bounded by a time of the order of ℓd-1/G .

Differential sensitivity to regional-scale drought in six central US grasslands.

PubMed

Knapp, Alan K; Carroll, Charles J W; Denton, Elsie M; La Pierre, Kimberly J; Collins, Scott L; Smith, Melinda D

2015-04-01

Terrestrial ecosystems often vary dramatically in their responses to drought, but the reasons for this are unclear. With climate change forecasts for more frequent and extensive drought in the future, a more complete understanding of the mechanisms that determine differential ecosystem sensitivity to drought is needed. In 2012, the Central US experienced the fourth largest drought in a century, with a regional-scale 40% reduction in growing season precipitation affecting ecosystems ranging from desert grassland to mesic tallgrass prairie. This provided an opportunity to assess ecosystem sensitivity to a drought of common magnitude in six native grasslands. We tested the prediction that drought sensitivity is inversely related to mean annual precipitation (MAP) by quantifying reductions in aboveground net primary production (ANPP). Long-term ANPP data available for each site (mean length = 16 years) were used as a baseline for calculating reductions in ANPP, and drought sensitivity was estimated as the reduction in ANPP per millimeter reduction in precipitation. Arid grasslands were the most sensitive to drought, but drought responses and sensitivity varied by more than twofold among the six grasslands, despite all sites experiencing 40% reductions in growing season precipitation. Although drought sensitivity generally decreased with increasing MAP as predicted, there was evidence that the identity and traits of the dominant species, as well as plant functional diversity, influenced sensitivity. A more comprehensive understanding of the mechanisms leading to differences in drought sensitivity will require multi-site manipulative experiments designed to assess both biotic and abiotic determinants of ecosystem sensitivity.

AC electrified jets in a flow-focusing device: Jet length scaling

PubMed Central

García-Sánchez, Pablo; Alzaga-Gimeno, Javier; Baret, Jean-Christophe

2016-01-01

We use a microfluidic flow-focusing device with integrated electrodes for controlling the production of water-in-oil drops. In a previous work, we reported that very long jets can be formed upon application of AC fields. We now study in detail the appearance of the long jets as a function of the electrical parameters, i.e., water conductivity, signal frequency, and voltage amplitude. For intermediate frequencies, we find a threshold voltage above which the jet length rapidly increases. Interestingly, this abrupt transition vanishes for high frequencies of the signal and the jet length grows smoothly with voltage. For frequencies below a threshold value, we previously reported a transition from a well-behaved uniform jet to highly unstable liquid structures in which axisymmetry is lost rather abruptly. These liquid filaments eventually break into droplets of different sizes. In this work, we characterize this transition with a diagram as a function of voltage and liquid conductivity. The electrical response of the long jets was studied via a distributed element circuit model. The model allows us to estimate the electric potential at the tip of the jet revealing that, for any combination of the electrical parameters, the breakup of the jet occurs at a critical value of this potential. We show that this voltage is around 550 V for our device geometry and choice of flow rates. PMID:27375826

AC electrified jets in a flow-focusing device: Jet length scaling.

PubMed

Castro-Hernández, Elena; García-Sánchez, Pablo; Alzaga-Gimeno, Javier; Tan, Say Hwa; Baret, Jean-Christophe; Ramos, Antonio

2016-07-01

We use a microfluidic flow-focusing device with integrated electrodes for controlling the production of water-in-oil drops. In a previous work, we reported that very long jets can be formed upon application of AC fields. We now study in detail the appearance of the long jets as a function of the electrical parameters, i.e., water conductivity, signal frequency, and voltage amplitude. For intermediate frequencies, we find a threshold voltage above which the jet length rapidly increases. Interestingly, this abrupt transition vanishes for high frequencies of the signal and the jet length grows smoothly with voltage. For frequencies below a threshold value, we previously reported a transition from a well-behaved uniform jet to highly unstable liquid structures in which axisymmetry is lost rather abruptly. These liquid filaments eventually break into droplets of different sizes. In this work, we characterize this transition with a diagram as a function of voltage and liquid conductivity. The electrical response of the long jets was studied via a distributed element circuit model. The model allows us to estimate the electric potential at the tip of the jet revealing that, for any combination of the electrical parameters, the breakup of the jet occurs at a critical value of this potential. We show that this voltage is around 550 V for our device geometry and choice of flow rates.

Rayleigh instability at small length scales.

PubMed

Gopan, Nandu; Sathian, Sarith P

2014-09-01

The Rayleigh instability (also called the Plateau-Rayleigh instability) of a nanosized liquid propane thread is investigated using molecular dynamics (MD). The validity of classical predictions at small length scales is verified by comparing the temporal evolution of liquid thread simulated by MD against classical predictions. Previous works have shown that thermal fluctuations become dominant at small length scales. The role and influence of the stochastic nature of thermal fluctuations in determining the instability at small length scale is also investigated. Thermal fluctuations are seen to dominate and accelerate the breakup process only during the last stages of breakup. The simulations also reveal that the breakup profile of nanoscale threads undergo modification due to reorganization of molecules by the evaporation-condensation process.

ε-Poly-L-lysine peptide chain length regulated by the linkers connecting the transmembrane domains of ε-Poly-L-lysine synthetase.

PubMed

Hamano, Yoshimitsu; Kito, Naoko; Kita, Akihiro; Imokawa, Yuuki; Yamanaka, Kazuya; Maruyama, Chitose; Katano, Hajime

2014-08-01

ε-Poly-l-lysine (ε-PL), consisting of 25 to 35 l-lysine residues with linkages between the α-carboxyl groups and ε-amino groups, is produced by Streptomyces albulus NBRC14147. ε-PL synthetase (Pls) is a membrane protein with six transmembrane domains (TM1 to TM6) as well as both an adenylation domain and a thiolation domain, characteristic of the nonribosomal peptide synthetases. Pls directly generates ε-PL chain length diversity (25- to 35-mer), but the processes that control the chain length of ε-PL during the polymerization reaction are still not fully understood. Here, we report on the identification of Pls amino acid residues involved in the regulation of the ε-PL chain length. From approximately 12,000 variants generated by random mutagenesis, we found 8 Pls variants that produced shorter chains of ε-PL. These variants have one or more mutations in two linker regions connecting the TM1 and TM2 domains and the TM3 and TM4 domains. In the Pls catalytic mechanism, the growing chain of ε-PL is not tethered to the enzyme, implying that the enzyme must hold the growing chain until the polymerization reaction is complete. Our findings reveal that the linker regions are important contributors to grasp the growing chain of ε-PL. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

A large-scale full-length cDNA analysis to explore the budding yeast transcriptome

PubMed Central

Miura, Fumihito; Kawaguchi, Noriko; Sese, Jun; Toyoda, Atsushi; Hattori, Masahira; Morishita, Shinichi; Ito, Takashi

2006-01-01

We performed a large-scale cDNA analysis to explore the transcriptome of the budding yeast Saccharomyces cerevisiae. We sequenced two cDNA libraries, one from the cells exponentially growing in a minimal medium and the other from meiotic cells. Both libraries were generated by using a vector-capping method that allows the accurate mapping of transcription start sites (TSSs). Consequently, we identified 11,575 TSSs associated with 3,638 annotated genomic features, including 3,599 ORFs, to suggest that most yeast genes have two or more TSSs. In addition, we identified 45 previously undescribed introns, including those affecting current ORF annotations and those spliced alternatively. Furthermore, the analysis revealed 667 transcription units in the intergenic regions and transcripts derived from antisense strands of 367 known features. We also found that 348 ORFs carry TSSs in their 3′-halves to generate sense transcripts starting from inside the ORFs. These results indicate that the budding yeast transcriptome is considerably more complex than previously thought, and it shares many recently revealed characteristics with the transcriptomes of mammals and other higher eukaryotes. Thus, the genome-wide active transcription that generates novel classes of transcripts appears to be an intrinsic feature of the eukaryotic cells. The budding yeast will serve as a versatile model for the studies on these aspects of transcriptome, and the full-length cDNA clones can function as an invaluable resource in such studies. PMID:17101987

Instability of evaporation fronts in the interstellar medium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Jeong-Gyu; Kim, Woong-Tae, E-mail: jgkim@astro.snu.ac.kr, E-mail: wkim@astro.snu.ac.kr

2013-12-10

The neutral component of the interstellar medium is segregated into the cold neutral medium (CNM) and warm neutral medium (WNM) as a result of thermal instability. It was found that a plane-parallel CNM-WNM evaporation interface, across which the CNM undergoes thermal expansion, is linearly unstable to corrugational disturbances, in complete analogy with the Darrieus-Landau instability (DLI) of terrestrial flames. We perform a full linear stability analysis as well as nonlinear hydrodynamic simulations of the DLI of such evaporation fronts in the presence of thermal conduction. We find that the DLI is suppressed at short length scales by conduction. The lengthmore » and time scales of the fastest growing mode are inversely proportional to the evaporation flow speed of the CNM and its square, respectively. In the nonlinear stage, the DLI saturates to a steady state where the front deforms to a finger-like shape protruding toward the WNM, without generating turbulence. The evaporation rate at nonlinear saturation is larger than the initial plane-parallel value by a factor of ∼2.4 when the equilibrium thermal pressure is 1800 k {sub B} cm{sup –3} K. The degrees of front deformation and evaporation-rate enhancement at nonlinear saturation are determined primarily by the density ratio between the CNM and WNM. We demonstrate that the Field length in the thermally unstable medium should be resolved by at least four grid points to obtain reliable numerical outcomes involving thermal instability.« less

Surface physicochemical properties at the micro and nano length scales: role on bacterial adhesion and Xylella fastidiosa biofilm development.

PubMed

Lorite, Gabriela S; Janissen, Richard; Clerici, João H; Rodrigues, Carolina M; Tomaz, Juarez P; Mizaikoff, Boris; Kranz, Christine; de Souza, Alessandra A; Cotta, Mônica A

2013-01-01

The phytopathogen Xylella fastidiosa grows as a biofilm causing vascular occlusion and consequently nutrient and water stress in different plant hosts by adhesion on xylem vessel surfaces composed of cellulose, hemicellulose, pectin and proteins. Understanding the factors which influence bacterial adhesion and biofilm development is a key issue in identifying mechanisms for preventing biofilm formation in infected plants. In this study, we show that X. fastidiosa biofilm development and architecture correlate well with physicochemical surface properties after interaction with the culture medium. Different biotic and abiotic substrates such as silicon (Si) and derivatized cellulose films were studied. Both biofilms and substrates were characterized at the micro- and nanoscale, which corresponds to the actual bacterial cell and membrane/ protein length scales, respectively. Our experimental results clearly indicate that the presence of surfaces with different chemical composition affect X. fastidiosa behavior from the point of view of gene expression and adhesion functionality. Bacterial adhesion is facilitated on more hydrophilic surfaces with higher surface potentials; XadA1 adhesin reveals different strengths of interaction on these surfaces. Nonetheless, despite different architectural biofilm geometries and rates of development, the colonization process occurs on all investigated surfaces. Our results univocally support the hypothesis that different adhesion mechanisms are active along the biofilm life cycle representing an adaptation mechanism for variations on the specific xylem vessel composition, which the bacterium encounters within the infected plant.

Surface Physicochemical Properties at the Micro and Nano Length Scales: Role on Bacterial Adhesion and Xylella fastidiosa Biofilm Development

PubMed Central

Lorite, Gabriela S.; Janissen, Richard; Clerici, João H.; Rodrigues, Carolina M.; Tomaz, Juarez P.; Mizaikoff, Boris; Kranz, Christine; de Souza, Alessandra A.; Cotta, Mônica A.

2013-01-01

The phytopathogen Xylella fastidiosa grows as a biofilm causing vascular occlusion and consequently nutrient and water stress in different plant hosts by adhesion on xylem vessel surfaces composed of cellulose, hemicellulose, pectin and proteins. Understanding the factors which influence bacterial adhesion and biofilm development is a key issue in identifying mechanisms for preventing biofilm formation in infected plants. In this study, we show that X. fastidiosa biofilm development and architecture correlate well with physicochemical surface properties after interaction with the culture medium. Different biotic and abiotic substrates such as silicon (Si) and derivatized cellulose films were studied. Both biofilms and substrates were characterized at the micro- and nanoscale, which corresponds to the actual bacterial cell and membrane/ protein length scales, respectively. Our experimental results clearly indicate that the presence of surfaces with different chemical composition affect X. fastidiosa behavior from the point of view of gene expression and adhesion functionality. Bacterial adhesion is facilitated on more hydrophilic surfaces with higher surface potentials; XadA1 adhesin reveals different strengths of interaction on these surfaces. Nonetheless, despite different architectural biofilm geometries and rates of development, the colonization process occurs on all investigated surfaces. Our results univocally support the hypothesis that different adhesion mechanisms are active along the biofilm life cycle representing an adaptation mechanism for variations on the specific xylem vessel composition, which the bacterium encounters within the infected plant. PMID:24073256

Scaling and design of landslide and debris-flow experiments

USGS Publications Warehouse

Iverson, Richard M.

2015-01-01

Scaling plays a crucial role in designing experiments aimed at understanding the behavior of landslides, debris flows, and other geomorphic phenomena involving grain-fluid mixtures. Scaling can be addressed by using dimensional analysis or – more rigorously – by normalizing differential equations that describe the evolving dynamics of the system. Both of these approaches show that, relative to full-scale natural events, miniaturized landslides and debris flows exhibit disproportionately large effects of viscous shear resistance and cohesion as well as disproportionately small effects of excess pore-fluid pressure that is generated by debris dilation or contraction. This behavioral divergence grows in proportion to H3, where H is the thickness of a moving mass. Therefore, to maximize geomorphological relevance, experiments with wet landslides and debris flows must be conducted at the largest feasible scales. Another important consideration is that, unlike stream flows, landslides and debris flows accelerate from statically balanced initial states. Thus, no characteristic macroscopic velocity exists to guide experiment scaling and design. On the other hand, macroscopic gravity-driven motion of landslides and debris flows evolves over a characteristic time scale (L/g)1/2, where g is the magnitude of gravitational acceleration and L is the characteristic length of the moving mass. Grain-scale stress generation within the mass occurs on a shorter time scale, H/(gL)1/2, which is inversely proportional to the depth-averaged material shear rate. A separation of these two time scales exists if the criterion H/L < < 1 is satisfied, as is commonly the case. This time scale separation indicates that steady-state experiments can be used to study some details of landslide and debris-flow behavior but cannot be used to study macroscopic landslide or debris-flow dynamics.

Grasping primate development: Ontogeny of intrinsic hand and foot proportions in capuchin monkeys (Cebus albifrons and Sapajus apella).

PubMed

Young, Jesse W; Heard-Booth, Amber N

2016-09-01

Young primates have relatively large hands and feet for their body size, perhaps enhancing grasping ability. We test the hypothesis that selection for improved grasping ability is responsible for these scaling trends by examining the ontogeny of intrinsic hand and foot proportions in capuchin monkeys (Cebus albifrons and Sapajus apella). If selection for improved grasping ability is responsible for the observed patterns of hand and foot growth in primates, we predicted that fingers and toes would be longer early in life and proportionally decline with age. We measured the lengths of manual and pedal metapodials and phalanges in a mixed-longitudinal radiographic sample. Bone lengths were (a) converted into phalangeal indices (summed non-distal phalangeal length/metapodial length) to test for age-related changes in intrinsic proportions and (b) fit to Gompertz models of growth to test for differences in the dynamics of phalangeal versus metapodial growth. Manual and pedal phalangeal indices nearly universally decreased with age in capuchin monkeys. Growth curve analyses revealed that metapodials generally grew at a faster rate, and for a longer duration, than corresponding phalanges. Our findings are consistent with the hypothesis that primates are under selection for increased grasping ability early in life. Relatively long digits may be functionally adaptive for growing capuchins, permitting a more secure grasp on both caregivers and arboreal supports, as well as facilitating early foraging. Additional studies of primates and other mammals, as well as tests of grasping performance, are required to fully evaluate the adaptive significance of primate hand and foot growth. © 2016 Wiley Periodicals, Inc.

Excess entropy scaling for the segmental and global dynamics of polyethylene melts.

PubMed

Voyiatzis, Evangelos; Müller-Plathe, Florian; Böhm, Michael C

2014-11-28

The range of validity of the Rosenfeld and Dzugutov excess entropy scaling laws is analyzed for unentangled linear polyethylene chains. We consider two segmental dynamical quantities, i.e. the bond and the torsional relaxation times, and two global ones, i.e. the chain diffusion coefficient and the viscosity. The excess entropy is approximated by either a series expansion of the entropy in terms of the pair correlation function or by an equation of state for polymers developed in the context of the self associating fluid theory. For the whole range of temperatures and chain lengths considered, the two estimates of the excess entropy are linearly correlated. The scaled bond and torsional relaxation times fall into a master curve irrespective of the chain length and the employed scaling scheme. Both quantities depend non-linearly on the excess entropy. For a fixed chain length, the reduced diffusion coefficient and viscosity scale linearly with the excess entropy. An empirical reduction to a chain length-independent master curve is accessible for both dynamic quantities. The Dzugutov scheme predicts an increased value of the scaled diffusion coefficient with increasing chain length which contrasts physical expectations. The origin of this trend can be traced back to the density dependence of the scaling factors. This finding has not been observed previously for Lennard-Jones chain systems (Macromolecules, 2013, 46, 8710-8723). Thus, it limits the applicability of the Dzugutov approach to polymers. In connection with diffusion coefficients and viscosities, the Rosenfeld scaling law appears to be of higher quality than the Dzugutov approach. An empirical excess entropy scaling is also proposed which leads to a chain length-independent correlation. It is expected to be valid for polymers in the Rouse regime.

Scaling in Free-Swimming Fish and Implications for Measuring Size-at-Time in the Wild

PubMed Central

Broell, Franziska; Taggart, Christopher T.

2015-01-01

This study was motivated by the need to measure size-at-age, and thus growth rate, in fish in the wild. We postulated that this could be achieved using accelerometer tags based first on early isometric scaling models that hypothesize that similar animals should move at the same speed with a stroke frequency that scales with length-1, and second on observations that the speed of primarily air-breathing free-swimming animals, presumably swimming ‘efficiently’, is independent of size, confirming that stroke frequency scales as length-1. However, such scaling relations between size and swimming parameters for fish remain mostly theoretical. Based on free-swimming saithe and sturgeon tagged with accelerometers, we introduce a species-specific scaling relationship between dominant tail beat frequency (TBF) and fork length. Dominant TBF was proportional to length-1 (r2 = 0.73, n = 40), and estimated swimming speed within species was independent of length. Similar scaling relations accrued in relation to body mass-0.29. We demonstrate that the dominant TBF can be used to estimate size-at-time and that accelerometer tags with onboard processing may be able to provide size-at-time estimates among free-swimming fish and thus the estimation of growth rate (change in size-at-time) in the wild. PMID:26673777

Genetic parameters for different growth scales in GIFT strain of Nile tilapia (Oreochromis niloticus).

PubMed

He, J; Gao, H; Xu, P; Yang, R

2015-12-01

Body weight, length, width and depth at two growth stages were observed for a total of 5015 individuals of GIFT strain, along with a pedigree including 5588 individuals from 104 sires and 162 dams was collected. Multivariate animal models and a random regression model were used to genetically analyse absolute and relative growth scales of these growth traits. In absolute growth scale, the observed growth traits had moderate heritabilities ranging from 0.321 to 0.576, while pairwise ratios between body length, width and depth were lowly inherited and maximum heritability was only 0.146 for length/depth. All genetic correlations were above 0.5 between pairwise growth traits and genetic correlation between length/width and length/depth varied between both growth stages. Based on those estimates, selection index of multiple traits of interest can be formulated in future breeding program to improve genetically body weight and morphology of the GIFT strain. In relative growth scale, heritabilities in relative growths of body length, width and depth to body weight were 0.257, 0.412 and 0.066, respectively, while genetic correlations among these allometry scalings were above 0.8. Genetic analysis for joint allometries of body weight to body length, width and depth will contribute to genetically regulate the growth rate between body shape and body weight. © 2015 Blackwell Verlag GmbH.

Growth of a Dendritic Channel Network (Invited)

NASA Astrophysics Data System (ADS)

Rothman, D.; Abrams, D. M.; Devauchelle, O.; Petroff, A. P.; Lobkovsky, A. E.; Straub, K. M.; McElroy, B.; Mohrig, D. C.; Kudrolli, A.

2009-12-01

Dendritic channel networks are a ubiquitous feature of Earth's topography. A half century of work has detailed their scale-invariant geometry. But relatively little is known about how such networks grow, especially in natural settings at geologic time scales. This talk addresses the growth of a particularly simple class of channel networks: those which drain groundwater. We focus on a pristine field site in the Florida Panhandle, in which channels extending for kilometers have been incised vertically through tens of meters of ancient beach sands. We first show how the flow of subsurface water interacts with the planform geometry of the network. Ground-penetrating radar images of the water table shape near a highly-ramified section of the network provide a qualitative view of groundwater focusing. Noting that the water table represents a balance between water input via rain and water flowing into the channel network, we solve for the steady state shape of the water table around the entire network and the associated water fluxes. Comparison of predicted and measured fluxes shows that the ramified structure of the Florida network is consistent with uniformly forced unstable growth through a homogeneous medium. In other words, the dendritic pattern results intrinsically from growth dynamics rather than geologic heterogeneity. We then use these observations to show that the growth of groundwater-driven networks can be described by two linear response laws. Remarkably, one of these growth laws is reversible, which allows us to reconstruct network history and estimate network age. A particularly striking feature of the Florida network is the existence of a characteristic length scale between channels. Our theory predicts how this length scale evolves, thereby linking network growth to geometric form. Reference: D. M. Abrams, A. E. Lobkovsky, A. P. Petroff, K. M. Straub, B. McElroy, D. C. Mohrig, A. Kudrolli, and D. H. Rothman,, Growth laws for channel networks incised by groundwater flow, Nature Geoscience, v. 2, 193-196, March 2009.

Desert bird associations with broad-scale boundary length: Applications in avian conservation

USGS Publications Warehouse

Gutzwiller, K.J.; Barrow, W.C.

2008-01-01

1. Current understanding regarding the effects of boundaries on bird communities has originated largely from studies of forest-non-forest boundaries in mesic systems. To assess whether broad-scale boundary length can affect bird community structure in deserts, and to identify patterns and predictors of species' associations useful in avian conservation, we studied relations between birds and boundary-length variables in Chihuahuan Desert landscapes. Operationally, a boundary was the border between two adjoining land covers, and broad-scale boundary length was the total length of such borders in a large area. 2. Within 2-km radius areas, we measured six boundary-length variables. We analysed bird-boundary relations for 26 species, tested for assemblage-level patterns in species' associations with boundary-length variables, and assessed whether body size, dispersal ability and cowbird-host status were correlates of these associations. 3. The abundances or occurrences of a significant majority of species were associated with boundary-length variables, and similar numbers of species were related positively and negatively to boundary-length variables. 4. Disproportionately small numbers of species were correlated with total boundary length, land-cover boundary length and shrubland-grassland boundary length (variables responsible for large proportions of boundary length). Disproportionately large numbers of species were correlated with roadside boundary length and riparian vegetation-grassland boundary length (variables responsible for small proportions of boundary length). Roadside boundary length was associated (positively and negatively) with the most species. 5. Species' associations with boundary-length variables were not correlated with body size, dispersal ability or cowbird-host status. 6. Synthesis and applications. For the species we studied, conservationists can use the regressions we report as working models to anticipate influences of boundary-length changes on bird abundance and occurrence, and to assess avifaunal composition for areas under consideration for protection. Boundary-length variables associated with a disproportionate or large number of species can be used as foci for landscape management. Assessing the underlying causes of bird-boundary relations may improve the prediction accuracy of associated models. We therefore advocate local- and broad-scale manipulative experiments involving the boundary types with which species were correlated, as indicated by the regressions. ?? 2008 The Authors.

Resolving Properties of Polymers and Nanoparticle Assembly through Coarse-Grained Computational Studies.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grest, Gary S.

2017-09-01

Coupled length and time scales determine the dynamic behavior of polymers and polymer nanocomposites and underlie their unique properties. To resolve the properties over large time and length scales it is imperative to develop coarse grained models which retain the atomistic specificity. Here we probe the degree of coarse graining required to simultaneously retain significant atomistic details a nd access large length and time scales. The degree of coarse graining in turn sets the minimum length scale instrumental in defining polymer properties and dynamics. Using polyethylene as a model system, we probe how the coarse - graining scale affects themore » measured dynamics with different number methylene group s per coarse - grained beads. Using these models we simulate polyethylene melts for times over 500 ms to study the viscoelastic properties of well - entangled polymer melts and large nanoparticle assembly as the nanoparticles are driven close enough to form nanostructures.« less

Effect of length scale on mechanical properties of Al-Cu eutectic alloy

NASA Astrophysics Data System (ADS)

Tiwary, C. S.; Roy Mahapatra, D.; Chattopadhyay, K.

2012-10-01

This paper attempts a quantitative understanding of the effect of length scale on two phase eutectic structure. We first develop a model that considers both the elastic and plastic properties of the interface. Using Al-Al2Cu lamellar eutectic as model system, the parameters of the model were experimentally determined using indentation technique. The model is further validated using the results of bulk compression testing of the eutectics having different length scales.

Time constraints in temperate-breeding species: Influence of growing season length on reproductive strategies

USGS Publications Warehouse

Gurney, K. E. B.; Clark, R.G.; Slattery, S.M.; Smith-Downey, N. V.; Walker, J.; Armstrong, L.M.; Stephens, S.E.; Petrula, M.; Corcoran, R.M.; Martin, K.H.; Degroot, K.A.; Brook, Rodney W.; Afton, A.D.; Cutting, K.; Warren, J.M.; Fournier, M.; Koons, D.N.

2011-01-01

Organisms that reproduce in temperate regions have limited time to produce offspring successfully, and this constraint is expected to be more pronounced in areas with short growing seasons. Information concerning how reproductive ecology of endotherms might be influenced by growing season length (GSL) is rare, and species that breed over a broad geographic range provide an opportunity to study the effects of time constraints on reproductive strategies. We analyzed data from a temperate-breeding bird, the lesser scaup Aythya affinis; hereafter scaup, collected at eight sites across a broad gradient of GSL to evaluate three hypotheses related to reproductive compensation in response to varying time constraints. Clutch initiation date in scaup was unaffected by GSL and was unrelated to latitude; spring thaw dates had a marginal impact on timing of breeding. Clutch size declined during the nesting season, as is reported frequently in bird species, but was also unaffected by GSL. Scaup do not appear to compensate for shorter growing seasons by more rapidly reducing clutch size. This study demonstrates that this species is remarkably consistent in terms of timing of breeding and clutch size, regardless of growing season characteristics. Such inflexibility could make this species particularly sensitive to environmental changes that affect resource availabilities. ?? 2011 The Authors. Ecography ?? 2011 Ecography.

Time constraints in temperate-breeding species: influence of growing season length on reproductive strategies

USGS Publications Warehouse

Gurney, K. E. B.; Clark, Russell G.; Slattery, Stuart; Smith-Downey, N. V.; Walker, Jordan I.; Armstrong, L.M.; Stephens, S.E.; Petrula, Michael J.; Corcoran, R.M.; Martin, K.; Degroot, K.A.; Brook, Rodney W.; Afton, Alan D.; Cutting, K.; Warren, J.M.; Fournier, M.; Koons, David N.

2011-01-01

Organisms that reproduce in temperate regions have limited time to produce offspring successfully, and this constraint is expected to be more pronounced in areas with short growing seasons. Information concerning how reproductive ecology of endotherms might be influenced by growing season length (GSL) is rare, and species that breed over a broad geographic range provide an opportunity to study the effects of time constraints on reproductive strategies. We analyzed data from a temperate-breeding bird, the lesser scaup Aythya affinis; hereafter scaup, collected at eight sites across a broad gradient of GSL to evaluate three hypotheses related to reproductive compensation in response to varying time constraints. Clutch initiation date in scaup was unaffected by GSL and was unrelated to latitude; spring thaw dates had a marginal impact on timing of breeding. Clutch size declined during the nesting season, as is reported frequently in bird species, but was also unaffected by GSL. Scaup do not appear to compensate for shorter growing seasons by more rapidly reducing clutch size. This study demonstrates that this species is remarkably consistent in terms of timing of breeding and clutch size, regardless of growing season characteristics. Such inflexibility could make this species particularly sensitive to environmental changes that affect resource availabilities.

Effects of climate change on spring wheat phenophase and water requirement in Heihe River basin, China

NASA Astrophysics Data System (ADS)

Han, Dongmei; Yan, Denghua; Xu, Xinyi; Gao, Yu

2017-02-01

Climate change has significantly altered the temperature rhythm which is a key factor for the growth and phenophase of the crop. And temperature change further affects crop water requirement and irrigation system. In the north-west of China, one of the most important crop production bases is Heihe River basin where the observed phenological data is scarce. This study thus first adopted accumulated temperature threshold (ATT) method to define the phenological stages of the crop, and analysed the effect of climate change on phenological stages and water requirement of the crop during growing season. The results indicated the ATT was available for the determination of spring wheat phenological stages. The start dates of all phenological stages became earlier and the growing season length (days) was reduced by 7 days under climate change. During the growing season, water requirement without consideration of phenophase change has been increased by 26.1 mm, while that with consideration of phenophase change was featured in the decrease of water requirement by 50 mm. When temperature increased by 1°C on average, the changes were featured in the 2 days early start date of growing season, 2 days decrease of growing season length, and the 1.4 mm increase of water requirement, respectively.

Statistical Mechanics of Turbulent Dynamos

NASA Technical Reports Server (NTRS)

Shebalin, John V.

2014-01-01

Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much investigation, by greatly extending the statistical theory of ideal MHD turbulence. The mathematical details of broken ergodicity, in fact, give a quantitative explanation of how coherent structure, dynamic alignment and force-free states appear in turbulent magnetofluids. The relevance of these ideal results to real MHD turbulence occurs because broken ergodicity is most manifest in the ideal case at the largest length scales and it is in these largest scales that a real magnetofluid has the least dissipation, i.e., most closely approaches the behavior of an ideal magnetofluid. Furthermore, the effects grow stronger when cross and magnetic helicities grow large with respect to energy, and this is exactly what occurs with time in a real magnetofluid, where it is called selective decay. The relevance of these results found in ideal MHD turbulence theory to the real world is that they provide at least a qualitative explanation of why confined turbulent magnetofluids, such as the liquid iron that fills the Earth's outer core, produce stationary, large-scale magnetic fields, i.e., the geomagnetic field. These results should also apply to other planets as well as to plasma confinement devices on Earth and in space, and the effects should be manifest if Reynolds numbers are high enough and there is enough time for stationarity to occur, at least approximately. In the presentation, details will be given for both theoretical and numerical results, and references will be provided.

MHD Turbulence and Magnetic Dynamos

NASA Technical Reports Server (NTRS)

Shebalin, John V

2014-01-01

Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much investigation, by greatly extending the statistical theory of ideal MHD turbulence. The mathematical details of broken ergodicity, in fact, give a quantitative explanation of how coherent structure, dynamic alignment and force-free states appear in turbulent magnetofluids. The relevance of these ideal results to real MHD turbulence occurs because broken ergodicity is most manifest in the ideal case at the largest length scales and it is in these largest scales that a real magnetofluid has the least dissipation, i.e., most closely approaches the behavior of an ideal magnetofluid. Furthermore, the effects grow stronger when cross and magnetic helicities grow large with respect to energy, and this is exactly what occurs with time in a real magnetofluid, where it is called selective decay. The relevance of these results found in ideal MHD turbulence theory to the real world is that they provide at least a qualitative explanation of why confined turbulent magnetofluids, such as the liquid iron that fills the Earth's outer core, produce stationary, large-scale magnetic fields, i.e., the geomagnetic field. These results should also apply to other planets as well as to plasma confinement devices on Earth and in space, and the effects should be manifest if Reynolds numbers are high enough and there is enough time for stationarity to occur, at least approximately. In the presentation, details will be given for both theoretical and numerical results, and references will be provided.

Energy Spectra of Higher Reynolds Number Turbulence by the DNS with up to 122883 Grid Points

NASA Astrophysics Data System (ADS)

Ishihara, Takashi; Kaneda, Yukio; Morishita, Koji; Yokokawa, Mitsuo; Uno, Atsuya

2014-11-01

Large-scale direct numerical simulations (DNS) of forced incompressible turbulence in a periodic box with up to 122883 grid points have been performed using K computer. The maximum Taylor-microscale Reynolds number Rλ, and the maximum Reynolds number Re based on the integral length scale are over 2000 and 105, respectively. Our previous DNS with Rλ up to 1100 showed that the energy spectrum has a slope steeper than - 5 / 3 (the Kolmogorov scaling law) by factor 0 . 1 at the wavenumber range (kη < 0 . 03). Here η is the Kolmogorov length scale. Our present DNS at higher resolutions show that the energy spectra with different Reynolds numbers (Rλ > 1000) are well normalized not by the integral length-scale but by the Kolmogorov length scale, at the wavenumber range of the steeper slope. This result indicates that the steeper slope is not inherent character in the inertial subrange, and is affected by viscosity.

Resolving Dynamic Properties of Polymers through Coarse-Grained Computational Studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Salerno, K. Michael; Agrawal, Anupriya; Perahia, Dvora

2016-02-05

Coupled length and time scales determine the dynamic behavior of polymers and underlie their unique viscoelastic properties. To resolve the long-time dynamics it is imperative to determine which time and length scales must be correctly modeled. In this paper, we probe the degree of coarse graining required to simultaneously retain significant atomistic details and access large length and time scales. The degree of coarse graining in turn sets the minimum length scale instrumental in defining polymer properties and dynamics. Using linear polyethylene as a model system, we probe how the coarse-graining scale affects the measured dynamics. Iterative Boltzmann inversion ismore » used to derive coarse-grained potentials with 2–6 methylene groups per coarse-grained bead from a fully atomistic melt simulation. We show that atomistic detail is critical to capturing large-scale dynamics. Finally, using these models we simulate polyethylene melts for times over 500 μs to study the viscoelastic properties of well-entangled polymer melts.« less

Electropolishing effect on roughness metrics of ground stainless steel: a length scale study

NASA Astrophysics Data System (ADS)

Nakar, Doron; Harel, David; Hirsch, Baruch

2018-03-01

Electropolishing is a widely-used electrochemical surface finishing process for metals. The electropolishing of stainless steel has vast commercial application, such as improving corrosion resistance, improving cleanness, and brightening. The surface topography characterization is performed using several techniques with different lateral resolutions and length scales, from atomic force microscopy in the nano-scale (<0.1 µm) to stylus and optical profilometry in the micro- and mesoscales (0.1 µm-1 mm). This paper presents an experimental length scale study of the surface texture of ground stainless steel followed by an electropolishing process in the micro and meso lateral scales. Both stylus and optical profilometers are used, and multiple cut-off lengths of the standard Gaussian filter are adopted. While the commonly used roughness amplitude parameters (Ra, Rq and Rz) fail to characterize electropolished textures, the root mean square slope (RΔq) is found to better describe the electropolished surfaces and to be insensitive to scale.

Off-fault tip splay networks: a genetic and generic property of faults indicative of their long-term propagation, and a major component of off-fault damage

NASA Astrophysics Data System (ADS)

Perrin, C.; Manighetti, I.; Gaudemer, Y.

2015-12-01

Faults grow over the long-term by accumulating displacement and lengthening, i.e., propagating laterally. We use fault maps and fault propagation evidences available in literature to examine geometrical relations between parent faults and off-fault splays. The population includes 47 worldwide crustal faults with lengths from millimeters to thousands of kilometers and of different slip modes. We show that fault splays form adjacent to any propagating fault tip, whereas they are absent at non-propagating fault ends. Independent of parent fault length, slip mode, context, etc, tip splay networks have a similar fan shape widening in direction of long-term propagation, a similar relative length and width (~30 and ~10 % of parent fault length, respectively), and a similar range of mean angles to parent fault (10-20°). Tip splays more commonly develop on one side only of the parent fault. We infer that tip splay networks are a genetic and a generic property of faults indicative of their long-term propagation. We suggest that they represent the most recent damage off-the parent fault, formed during the most recent phase of fault lengthening. The scaling relation between parent fault length and width of tip splay network implies that damage zones enlarge as parent fault length increases. Elastic properties of host rocks might thus be modified at large distances away from a fault, up to 10% of its length. During an earthquake, a significant fraction of coseismic slip and stress is dissipated into the permanent damage zone that surrounds the causative fault. We infer that coseismic dissipation might occur away from a rupture zone as far as a distance of 10% of the length of its causative fault. Coseismic deformations and stress transfers might thus be significant in broad regions about principal rupture traces. This work has been published in Comptes Rendus Geoscience under doi:10.1016/j.crte.2015.05.002 (http://www.sciencedirect.com/science/article/pii/S1631071315000528).

Length scales and pinning of interfaces

PubMed Central

Tan, Likun

2016-01-01

The pinning of interfaces and free discontinuities by defects and heterogeneities plays an important role in a variety of phenomena, including grain growth, martensitic phase transitions, ferroelectricity, dislocations and fracture. We explore the role of length scale on the pinning of interfaces and show that the width of the interface relative to the length scale of the heterogeneity can have a profound effect on the pinning behaviour, and ultimately on hysteresis. When the heterogeneity is large, the pinning is strong and can lead to stick–slip behaviour as predicted by various models in the literature. However, when the heterogeneity is small, we find that the interface may not be pinned in a significant manner. This shows that a potential route to making materials with low hysteresis is to introduce heterogeneities at a length scale that is small compared with the width of the phase boundary. Finally, the intermediate setting where the length scale of the heterogeneity is comparable to that of the interface width is characterized by complex interactions, thereby giving rise to a non-monotone relationship between the relative heterogeneity size and the critical depinning stress. PMID:27002068

Current sheet extension and reconnection scaling in collisionless, hyperresistive, Hall MHD

NASA Astrophysics Data System (ADS)

Sullivan, B. P.; Bhattacharjee, A.; Huang, Y. M.

2009-11-01

We present Sweet-Parker type scaling arguments in the context of collisionless, hyper-resistive, Hall magnetohyrdodynamics (MHD). The predicted steady state scalings are consistent with those found by Chac'on et al. [PRL 99, 235001 (2007)], and Uzdensky, [PoP 16, 040702 (2009)], though our methods differ slightly. As with those studies, no prediction of electron dissipation region length is made. Numerical experiments confirm that both cusp like & extended geometries are realizable. Importantly, the length of the electron dissipation region (taken as a parameter by several recent studies) is found to depend on the level of hyper-resistivity. Although hyper-resistivity can produce modestly extended dissipation regions, the dissipation regions observed here are much shorter than those seen in many kinetic studies. The thickness of the dissipation region scales in a similar way as the length,so that the reconnection rate is not strongly sensitive to the level of hyperresistivity. The length of the electron dissipation region depends on electron inertia as well.The limitations of scaling theories that do not predict the length of the electron dissipation region are emphasized.

Soil carbon response to projected climate change in the U.S. western corn belt

USDA-ARS?s Scientific Manuscript database

The U.S. Western Corn Belt is projected to experience changes in growing conditions due to climate change over the next 50 to 100 years. Projected changes include an increase in growing season length, an increase in the number of high temperature stress days and warm nights, and an increase in preci...

Small-scale cannabis growers in Denmark and Finland.

PubMed

Hakkarainen, Pekka; Frank, Vibeke Asmussen; Perälä, Jussi; Dahl, Helle Vibeke

2011-01-01

To compare domestic cannabis cultivation in Denmark and Finland to describe national characteristics in small-scale cannabis growing. A Web survey conducted among small-scale cannabis growers in Denmark (June to November 2008) and Finland (May to June 2009). Current cannabis growers (Denmark, 401; Finland, 1,054). Comparisons in regard to social background, growing history, practices, purposes and motives of growing, and perceptions of risks. Cannabis was cultivated primarily for own use, but sharing with friends and avoiding criminal circles also were significant motives for growing. Finnish growers prioritized indoor cultivation, whereas the Danes were more in favor of open-air plantations. Risks of getting caught by the police were observed to be greater in Finland. Growing for medical purposes was twice as prevalent in Finland as in Denmark. Cannabis growing is a stronger and more novel phenomenon in Finland than in Denmark, but both countries have been influenced by international trends. Finnish and Danish small-scale cannabis cultivators can be considered to be ideologically oriented lifestyle growers. Differences in the magnitude of the phenomenon may reflect differences in the availability and quality of cannabis in national drug markets. The Internet had promoted the spreading of the trend. Copyright © 2011 S. Karger AG, Basel.

Minimal Length Scale Scenarios for Quantum Gravity.

PubMed

Hossenfelder, Sabine

2013-01-01

We review the question of whether the fundamental laws of nature limit our ability to probe arbitrarily short distances. First, we examine what insights can be gained from thought experiments for probes of shortest distances, and summarize what can be learned from different approaches to a theory of quantum gravity. Then we discuss some models that have been developed to implement a minimal length scale in quantum mechanics and quantum field theory. These models have entered the literature as the generalized uncertainty principle or the modified dispersion relation, and have allowed the study of the effects of a minimal length scale in quantum mechanics, quantum electrodynamics, thermodynamics, black-hole physics and cosmology. Finally, we touch upon the question of ways to circumvent the manifestation of a minimal length scale in short-distance physics.

A new length scale for quantum gravity: A resolution of the black hole information loss paradox

NASA Astrophysics Data System (ADS)

Singh, Tejinder P.

We show why and how Compton wavelength and Schwarzschild radius should be combined into one single new length scale, which we call the Compton-Schwarzschild length. Doing so offers a resolution of the black hole information loss paradox, and suggests Planck mass remnant black holes as candidates for dark matter. It also compels us to introduce torsion, and identify the Dirac field with a complex torsion field. Dirac equation and Einstein equations, are shown to be mutually dual limiting cases of an underlying gravitation theory which involves the Compton-Schwarzschild length scale, and includes a complex torsion field.

The electrostatic persistence length of polymers beyond the OSF limit.

PubMed

Everaers, R; Milchev, A; Yamakov, V

2002-05-01

We use large-scale Monte Carlo simulations to test scaling theories for the electrostatic persistence length l(e) of isolated, uniformly charged polymers with Debye-Hückel intrachain interactions in the limit where the screening length kappa(-1) exceeds the intrinsic persistence length of the chains. Our simulations cover a significantly larger part of the parameter space than previous studies. We observe no significant deviations from the prediction l(e) proportional to kappa(-2) by Khokhlov and Khachaturian which is based on applying the Odijk-Skolnick-Fixman theories of electrostatic bending rigidity and electrostatically excluded volume to the stretched de Gennes-Pincus-Velasco-Brochard polyelectrolyte blob chain. A linear or sublinear dependence of the persistence length on the screening length can be ruled out. We show that previous results pointing into this direction are due to a combination of excluded-volume and finite chain length effects. The paper emphasizes the role of scaling arguments in the development of useful representations for experimental and simulation data.

Variation in Fiber Length of Eastern Cottonwood in the Lower Mississippi Valley

Treesearch

James R. Wilcox; Robert E. Farmer

1968-01-01

In the research reported here, variation in fiber length within and between trees of Populus deltoides Bartr. was studied to obtain data essential to a breeding program. Samples were obtained by taking increment cores from trees growing in natural stands in Louisiana, Mississippi, and Tennessee. Most of the variation proved to be associated with...

Micro-scale and meso-scale architectural cues cooperate and compete to direct aligned tissue formation

PubMed Central

Gilchrist, Christopher L.; Ruch, David S.; Little, Dianne; Guilak, Farshid

2014-01-01

Tissue and biomaterial microenvironments provide architectural cues that direct important cell behaviors including cell shape, alignment, migration, and resulting tissue formation. These architectural features may be presented to cells across multiple length scales, from nanometers to millimeters in size. In this study, we examined how architectural cues at two distinctly different length scales, “micro-scale” cues on the order of ~1–2 μm, and “meso-scale” cues several orders of magnitude larger (>100 μm), interact to direct aligned neo-tissue formation. Utilizing a micro-photopatterning (μPP) model system to precisely arrange cell-adhesive patterns, we examined the effects of substrate architecture at these length scales on human mesenchymal stem cell (hMSC) organization, gene expression, and fibrillar collagen deposition. Both micro- and meso-scale architectures directed cell alignment and resulting tissue organization, and when combined, meso cues could enhance or compete against micro-scale cues. As meso boundary aspect ratios were increased, meso-scale cues overrode micro-scale cues and controlled tissue alignment, with a characteristic critical width (~500 μm) similar to boundary dimensions that exist in vivo in highly aligned tissues. Meso-scale cues acted via both lateral confinement (in a cell-density-dependent manner) and by permitting end-to-end cell arrangements that yielded greater fibrillar collagen deposition. Despite large differences in fibrillar collagen content and organization between μPP architectural conditions, these changes did not correspond with changes in gene expression of key matrix or tendon-related genes. These findings highlight the complex interplay between geometric cues at multiple length scales and may have implications for tissue engineering strategies, where scaffold designs that incorporate cues at multiple length scales could improve neo-tissue organization and resulting functional outcomes. PMID:25263687

On the saturation of the refractive index structure function. II - Influence of the correlation length on astronomical 'seeing'

NASA Technical Reports Server (NTRS)

Venkatakrishnan, P.

1987-01-01

A physical length scale in the wavefront corresponding to the parameter (r sub 0) characterizing the loss in detail in a long exposure image is identified, and the influence of the correlation scale of turbulence as r sub 0 approaches this scale is shown. Allowing for the effect of 2-point correlations in the fluctuations of the refractive index, Venkatakrishnan and Chatterjee (1987) proposed a modified law for the phase structure function. It is suggested that the departure of the phase structure function from the 5/3 power law for length scales in the wavefront approaching the correlation scale of turbulence may lead to better 'seeing' at longer wavelengths.

GrowYourIC: A Step Toward a Coherent Model of the Earth's Inner Core Seismic Structure

NASA Astrophysics Data System (ADS)

Lasbleis, Marine; Waszek, Lauren; Day, Elizabeth A.

2017-11-01

A complex inner core structure has been well established from seismic studies, showing radial and lateral heterogeneities at various length scales. Yet no geodynamic model is able to explain all the features observed. One of the main limits for this is the lack of tools to compare seismic observations and numerical models successfully. We use here a new Python tool called GrowYourIC to compare models of inner core structure. We calculate properties of geodynamic models of the inner core along seismic raypaths, for random or user-specified data sets. We test kinematic models which simulate fast lateral translation, superrotation, and differential growth. We explore first the influence on a real inner core data set, which has a sparse coverage of the inner core boundary. Such a data set is however able to successfully constrain the hemispherical boundaries due to a good sampling of latitudes. Combining translation and rotation could explain some of the features of the boundaries separating the inner core hemispheres. The depth shift of the boundaries, observed by some authors, seems unlikely to be modeled by a fast translation but could be produced by slow translation associated with superrotation.

Root biomechanics in Rhizophora mangle: anatomy, morphology and ecology of mangrove's flying buttresses.

PubMed

Méndez-Alonzo, Rodrigo; Moctezuma, Coral; Ordoñez, Víctor R; Angeles, Guillermo; Martínez, Armando J; López-Portillo, Jorge

2015-04-01

Rhizophora species of mangroves have a conspicuous system of stilt-like roots (rhizophores) that grow from the main stem and resemble flying buttresses. As such, the development of rhizophores can be predicted to be important for the effective transmission of dynamic loads from the top of the tree to the ground, especially where the substrate is unstable, as is often the case in the habitats where Rhizophora species typically grow. This study tests the hypothesis that rhizophore architecture in R. mangle co-varies with their proximity to the main stem, and with stem size and crown position. The allometry and wood mechanical properties of R. mangle (red mangrove) trees growing in a mangrove basin forest within a coastal lagoon in Mexico were compared with those of coexisting, non-buttressed mangrove trees of Avicennia germinans. The anatomy of rhizophores was related to mechanical stress due to crown orientation (static load) and to prevailing winds (dynamic load) at the study site. Rhizophores buttressed between 10 and 33 % of tree height. There were significant and direct scaling relationships between the number, height and length of rhizophores vs. basal area, tree height and crown area. Wood mechanical resistance was significantly higher in the buttressed R. mangle (modulus of elasticity, MOE = 18·1 ± 2 GPa) than in A. germinans (MOE = 12·1 ± 0·5 GPa). Slenderness ratios (total height/stem diameter) were higher in R. mangle, but there were no interspecies differences in critical buckling height. When in proximity to the main stem, rhizophores had a lower length/height ratio, higher eccentricity and higher xylem/bark and pith proportions. However, there were no directional trends with regard to prevailing winds or tree leaning. In comparison with A. germinans, a tree species with wide girth and flare at the base, R. mangle supports a thinner stem of higher mechanical resistance that is stabilized by rhizophores resembling flying buttresses. This provides a unique strategy to increase tree slenderness and height in the typically unstable substrate on which the trees grow, at a site that is subject to frequent storms. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Topoclimate effects on growing season length and montane conifer growth in complex terrain

NASA Astrophysics Data System (ADS)

Barnard, D. M.; Barnard, H. R.; Molotch, N. P.

2017-05-01

Spatial variability in the topoclimate-driven linkage between forest phenology and tree growth in complex terrain is poorly understood, limiting our understanding of how ecosystems function as a whole. To characterize the influence of topoclimate on phenology and growth, we determined the start, end, and length of the growing season (GSstart, GSend, and GSL, respectively) using the correlation between transpiration and evaporative demand, measured with sapflow. We then compared these metrics with stem relative basal area increment (relative BAI) at seven sites among elevation and aspects in a Colorado montane forest. As elevation increased, we found shorter GSL (-50 d km-1) due to later GSstart (40 d km-1) and earlier GSend (-10 d km-1). North-facing sites had a 21 d shorter GSL than south-facing sites at similar elevations (i.e. equal to 200 m elevation difference on a given aspect). Growing season length was positively correlated with relative BAI, explaining 83% of the variance. This study shows that topography exerts strong environmental controls on GSL and thus forest growth. Given the climate-related dependencies of these controls, the results presented here have important implications for ecosystem responses to changes in climate and highlight the need for improved phenology representation in complex terrain.

Pilot study evaluating the effects of a cervical headgear on the C-axis: the growth axis of the dentomaxillary complex.

PubMed

Braun, Stanley; Bottrel, J Alexandre

2004-12-01

The C-axis, a growth vector for the dentomaxillary complex, is a means of quantifying complex maxillary growth in the sagittal plane through 3 key cephalometric measurements. This pilot study examined the effect of a cervical headgear, worn 8 to 10 hours per day, on the growth axis. The mean velocity of C-axis length increase in normally growing boys in the age range studied is 1.14 mm per year. In normally growing girls, the C-axis length increase is nonlinear, varying from a mean of 1.67 mm per year at age 9 and to 0.78 mm per year at 13.5 years of age. The cervical headgear reduced the C-axis length increases by 73.7% in boys and 61.1% in girls. The growth axis vector angle theta; was not clinically affected in either sex, but the palatal plane angle alpha became more acute in both sexes, rather than becoming more obtuse as it does in normally growing adolescents. Additional research should be undertaken to determine the effects on the C-axis by other cervical headgears having different lines of action relative to the center of resistance of the dentomaxillary complex, as well as occipital-pull and straight distal-pull headgear.

Solar potential scaling and the urban road network topology

NASA Astrophysics Data System (ADS)

Najem, Sara

2017-01-01

We explore the scaling of cities' solar potentials with their number of buildings and reveal a latent dependence between the solar potential and the length of the corresponding city's road network. This scaling is shown to be valid at the grid and block levels and is attributed to a common street length distribution. Additionally, we compute the buildings' solar potential correlation function and length in order to determine the set of critical exponents typifying the urban solar potential universality class.

Scale effects between body size and limb design in quadrupedal mammals.

PubMed

Kilbourne, Brandon M; Hoffman, Louwrens C

2013-01-01

Recently the metabolic cost of swinging the limbs has been found to be much greater than previously thought, raising the possibility that limb rotational inertia influences the energetics of locomotion. Larger mammals have a lower mass-specific cost of transport than smaller mammals. The scaling of the mass-specific cost of transport is partly explained by decreasing stride frequency with increasing body size; however, it is unknown if limb rotational inertia also influences the mass-specific cost of transport. Limb length and inertial properties--limb mass, center of mass (COM) position, moment of inertia, radius of gyration, and natural frequency--were measured in 44 species of terrestrial mammals, spanning eight taxonomic orders. Limb length increases disproportionately with body mass via positive allometry (length ∝ body mass(0.40)); the positive allometry of limb length may help explain the scaling of the metabolic cost of transport. When scaled against body mass, forelimb inertial properties, apart from mass, scale with positive allometry. Fore- and hindlimb mass scale according to geometric similarity (limb mass ∝ body mass(1.0)), as do the remaining hindlimb inertial properties. The positive allometry of limb length is largely the result of absolute differences in limb inertial properties between mammalian subgroups. Though likely detrimental to locomotor costs in large mammals, scale effects in limb inertial properties appear to be concomitant with scale effects in sensorimotor control and locomotor ability in terrestrial mammals. Across mammals, the forelimb's potential for angular acceleration scales according to geometric similarity, whereas the hindlimb's potential for angular acceleration scales with positive allometry.

Scale Effects between Body Size and Limb Design in Quadrupedal Mammals

PubMed Central

Kilbourne, Brandon M.; Hoffman, Louwrens C.

2013-01-01

Recently the metabolic cost of swinging the limbs has been found to be much greater than previously thought, raising the possibility that limb rotational inertia influences the energetics of locomotion. Larger mammals have a lower mass-specific cost of transport than smaller mammals. The scaling of the mass-specific cost of transport is partly explained by decreasing stride frequency with increasing body size; however, it is unknown if limb rotational inertia also influences the mass-specific cost of transport. Limb length and inertial properties – limb mass, center of mass (COM) position, moment of inertia, radius of gyration, and natural frequency – were measured in 44 species of terrestrial mammals, spanning eight taxonomic orders. Limb length increases disproportionately with body mass via positive allometry (length ∝ body mass0.40); the positive allometry of limb length may help explain the scaling of the metabolic cost of transport. When scaled against body mass, forelimb inertial properties, apart from mass, scale with positive allometry. Fore- and hindlimb mass scale according to geometric similarity (limb mass ∝ body mass1.0), as do the remaining hindlimb inertial properties. The positive allometry of limb length is largely the result of absolute differences in limb inertial properties between mammalian subgroups. Though likely detrimental to locomotor costs in large mammals, scale effects in limb inertial properties appear to be concomitant with scale effects in sensorimotor control and locomotor ability in terrestrial mammals. Across mammals, the forelimb's potential for angular acceleration scales according to geometric similarity, whereas the hindlimb's potential for angular acceleration scales with positive allometry. PMID:24260117

The prospects of transition metal dichalcogenides for ultimately scaled CMOS

NASA Astrophysics Data System (ADS)

Thiele, S.; Kinberger, W.; Granzner, R.; Fiori, G.; Schwierz, F.

2018-05-01

MOSFET gate length scaling has been a main source of progress in digital electronics for decades. Today, researchers still spend considerable efforts on reducing the gate length and on developing ultimately scaled MOSFETs, thereby exploring both new device architectures and alternative channel materials beyond Silicon such as two-dimensional TMDs (transition metal dichalcogenide). On the other hand, the envisaged scaling scenario for the next 15 years has undergone a significant change recently. While the 2013 ITRS edition required a continuation of aggressive gate length scaling for at least another 15 years, the 2015 edition of the ITRS suggests a deceleration and eventually a levelling off of gate length scaling and puts more emphasis on alternative options such as pitch scaling to keep Moore's Law alive. In the present paper, future CMOS scaling is discussed in the light of emerging two-dimensional MOSFET channel, in particular two-dimensional TMDs. To this end, the scaling scenarios of the 2013 and 2015 ITRS editions are considered and the scaling potential of TMD MOSFETs is investigated by means of quantum-mechanical device simulations. It is shown that for ultimately scaled MOSFETs as required in the 2013 ITRS, the heavy carrier effective masses of the Mo- and W-based TMDs are beneficial for the suppression of direct source-drain tunneling, while to meet the significantly relaxed scaling targets of the 2016 ITRS heavy-effective-mass channels are not needed.

Age and growth of flathead catfish, Pylodictus olivaris rafinesque, in the Altamaha River system, Georgia

USGS Publications Warehouse

Grabowski, T.B.; Isely, J.J.; Weller, R.R.

2004-01-01

Flathead catfish were introduced to the Altamaha River system, Georgia in the 1970's. We determined the length-weight relationship, Von Bertalanffy growth parameters, and back calculated lengths by examining the sagittal otoliths of 331 individuals captured from this population. We found that there were no sex related differences in length weight relationship or Von Bertalanffy growth parameters. Flathead catfish in the Altamaha River system grow at about the same rate as individuals in other introduced populations.

Engineering Cyanobacterial Cell Morphology for Enhanced Recovery and Processing of Biomass.

PubMed

Jordan, Adam; Chandler, Jenna; MacCready, Joshua S; Huang, Jingcheng; Osteryoung, Katherine W; Ducat, Daniel C

2017-05-01

Cyanobacteria are emerging as alternative crop species for the production of fuels, chemicals, and biomass. Yet, the success of these microbes depends on the development of cost-effective technologies that permit scaled cultivation and cell harvesting. Here, we investigate the feasibility of engineering cell morphology to improve biomass recovery and decrease energetic costs associated with lysing cyanobacterial cells. Specifically, we modify the levels of Min system proteins in Synechococcus elongatus PCC 7942. The Min system has established functions in controlling cell division by regulating the assembly of FtsZ, a tubulin-like protein required for defining the bacterial division plane. We show that altering the expression of two FtsZ-regulatory proteins, MinC and Cdv3, enables control over cell morphology by disrupting FtsZ localization and cell division without preventing continued cell growth. By varying the expression of these proteins, we can tune the lengths of cyanobacterial cells across a broad dynamic range, anywhere from an ∼20% increased length (relative to the wild type) to near-millimeter lengths. Highly elongated cells exhibit increased rates of sedimentation under low centrifugal forces or by gravity-assisted settling. Furthermore, hyperelongated cells are also more susceptible to lysis through the application of mild physical stress. Collectively, these results demonstrate a novel approach toward decreasing harvesting and processing costs associated with mass cyanobacterial cultivation by altering morphology at the cellular level. IMPORTANCE We show that the cell length of a model cyanobacterial species can be programmed by rationally manipulating the expression of protein factors that suppress cell division. In some instances, we can increase the size of these cells to near-millimeter lengths with this approach. The resulting elongated cells have favorable properties with regard to cell harvesting and lysis. Furthermore, cells treated in this manner continue to grow rapidly at time scales similar to those of uninduced controls. To our knowledge, this is the first reported example of engineering the cell morphology of cyanobacteria or algae to make them more compatible with downstream processing steps that present economic barriers to their use as alternative crop species. Therefore, our results are a promising proof-of-principle for the use of morphology engineering to increase the cost-effectiveness of the mass cultivation of cyanobacteria for various sustainability initiatives. Copyright © 2017 American Society for Microbiology.

[Effects of field border length for irrigation on photosynthetic characteristics, dry matter accumulation and water use efficiency of wheat].

PubMed

Ma, Shang-Yu; Yu, Zhen-Wen; Shi, Yu; Zhao, Jun-Ye; Zhang, Yong-Li

2014-04-01

With the high-yielding winter wheat cultivar Jimai 22 as test material, a three-year field experiment was conducted to examine the effects of border length for irrigation on flag leaf water potential, photosynthetic characteristics, dry matter accumulation and distribution of wheat. In the 2010-2011 growing season, six treatments were installed, i. e., the field border length was designed as 10 m (L10), 20 m (L20), 40 m (L40), 60 m (L60), 80 m (L80) and 100 m (L100). In the 2011-2012 and 2012-2013 growing seasons, the field border length was designed as 40 m (L40), 60 m (L60), 80 m (L80) and 100 m (L100). The results showed that the average relative soil water content of the 0-200 cm soil layer was presented as L80, L60>L100>L40>L20>L10 at anthesis in the 2010-2011 growing season and as L80, L60>L100>L40 in the 2011-2012 and 2012-2013 growing seasons. At 11 d and 21 d after anthesis, the water potential, net photosynthetic rate and transpiration rate of flag leaf were presented as L80, L100>L60>L40>L20, L10, and as L80>L60, L100>L40, L20, L10 at 31 d after anthesis. The coefficients of variability both of the dry matter accumulation at anthesis and maturity and of grain yield in different regions of L80 field were lower than those of L100. The average dry matter accumulation, dry matter accumulation after anthesis and the contribution to grain of L80 were dramatically higher than those of L100, L40, L20 and L10. L80 had the highest average grain yield and water use efficiency, being the best treatment for irrigation in our study.

A variable mixing-length ratio for convection theory

NASA Technical Reports Server (NTRS)

Chan, K. L.; Wolff, C. L.; Sofia, S.

1981-01-01

It is argued that a natural choice for the local mixing length in the mixing-length theory of convection has a value proportional to the local density scale height of the convective bubbles. The resultant variable mixing-length ratio (the ratio between the mixing length and the pressure scale height) of this theory is enhanced in the superadiabatic region and approaches a constant in deeper layers. Numerical tests comparing the new mixing length successfully eliminate most of the density inversion that typically plagues conventional results. The new approach also seems to indicate the existence of granular motion at the top of the convection zone.

Responses of stream nitrate and DOC loadings to hydrological forcing and climate change in an upland forest of the northeastern United States

NASA Astrophysics Data System (ADS)

Sebestyen, Stephen D.; Boyer, Elizabeth W.; Shanley, James B.

2009-06-01

In coming decades, higher annual temperatures, increased growing season length, and increased dormant season precipitation are expected across the northeastern United States in response to anthropogenic forcing of global climate. We synthesized long-term stream hydrochemical data from the Sleepers River Research Watershed in Vermont, United States, to explore the relationship of catchment wetness to stream nitrate and DOC loadings. We modeled changes in growing season length and precipitation patterns to simulate future climate scenarios and to assess how stream nutrient loadings respond to climate change. Model results for the 2070-2099 time period suggest that stream nutrient loadings during both the dormant and growing seasons will respond to climate change. During a warmer climate, growing season stream fluxes (runoff +20%, nitrate +57%, and DOC +58%) increase as more precipitation (+28%) and quick flow (+39%) occur during a longer growing season (+43 days). During the dormant season, stream water and nutrient loadings decrease. Net annual stream runoff (+8%) and DOC loading (+9%) increases are commensurate with the magnitude of the average increase of net annual precipitation (+7%). Net annual stream water and DOC loadings are primarily affected by increased dormant season precipitation. In contrast, decreased annual loading of stream nitrate (-2%) reflects a larger effect of growing season controls on stream nitrate and the effects of lengthened growing seasons in a warmer climate. Our findings suggest that leaching of nitrate and DOC from catchment soils will be affected by anthropogenic climate forcing, thereby affecting the timing and magnitude of annual stream loadings in the northeastern United States.

Age and growth of the kiyi, Leucichthys kiyi Koelz, in Lake Michigan

USGS Publications Warehouse

Deason, Hilary J.; Hile, Ralph

1947-01-01

Ages were determined and individual growth histories were calculated from the examination and measurement of the scales of 1,649 kiyis captured at seven localities in Lake Michigan in 1931 and 1932. The numbers of individuals employed for the investigation of other phases of the life history (such as length-frequency distributions, length-weight relationship, and sex ratio) varied according to the amount of data available or required. Age-group IV was dominant in the 1931 collections from Racine, Port Washington, and Kewaunee, Wisconsin, and age-group V dominated the 1932 samples from the Fox Islands and from three localities southward of Manistique, Michigan. A trend was noticeable toward an increase in average age from south to north. Among the explanations suggested for the observed differences in age composition were: Variation with latitude in the natural span of life; differences in fishing intensity; fluctuations in the strength of year classes (to account possibly for the shift in the dominant age group from 1931 to 1932). The oldest male kiyi belonged to the VII group and the oldest female was a member of the X group. The possible distorting effects of such factors as gear selection traceable to differences in the mesh sizes of nets fished in 1931 and 1932, selection by nets on the basis of the condition (K) of the fish, and local variations in fishing intensity and hence in the selective destruction of rapidly growing individuals in the fishery were held to be sufficiently great to render doubtful the significance of most of the observed local differences in growth rate. Kiyis from all samples were combined to determine the general growth in length. The growth in weight of the Fox Islands fish, however, was considered separately as these fish were consistently lighter than kiyis of corresponding length from other localities. The Lake Michigan kiyi grows slowly, with the females growing slightly more rapidly than the males. The grand average calculated lengths indicated, for example, that the females did not attain a total length of 10 inches until the fifth year of life or the males until the sixth. Similarly, the calculated weight of 4 ounces was not reached until the fifth or sixth year (with the actual time varying with sex and locality). The season's growth of the kiyi probably begins sometime in May and most or all of the growth is completed by the end of August. The calculated lengths of the age groups exhibited large discrepancies that differed from “Lee's phenomenon” as ordinarily observed in that the data for the later rather than the earlier years of life were affected most severely. Chief among the factors held responsible for these discrepancies were gear selection and the selective destruction of the more rapidly growing individuals in the fishery. Errors inherent in the (direct-proportion) method of computing growth from scale measurements were considered to have been unimportant. The Lake Michigan kiyi exhibits growth compensation–the tendency for the smaller of the young fish to have the more rapid growth in the later years of life. Comparisons with the average lengths and weights of the age groups of the Lake Ontario kiyi given by Pritchard (1931) indicated the Lake Michigan fish to be the larger at the earlier ages (age-groups II and III) and the smaller at the later ages (age-groups IV to VI). The length-frequency distributions of the age groups exhibited extensive overlap. As many as eight age groups were represented in a single centimeter interval of length. The length frequencies and average lengths of all fish collected, arranged according to the mesh sizes of the gill nets by which they were captured, revealed that the selective action of these nets in the taking of kiyis was much more obvious in the numbers of fish in the catch than in their average size. As an illustration, in 1930–1931, the 2 3/4-inch mesh nets took fish that were only 0.1 inch longer than those in 2 1/2-inch meshes but captured less than one fourth as many. Gill nets fished in northern Lake Michigan in 1932 captured kiyis that averaged 0.2 to 0.4 inch longer than those taken in the same meshes in southern Lake Michigan in 1930–1931. Because of the more slender form of kiyis from the northeastern island region of Lake Michigan, data on the general length weight relationship were compiled separately for fish of that area and for those of the great central basins of the lake. In both regions the weight increased to a power slightly greater than the cube of the length. Available information on condition indicated that the coefficient (K) was higher in August and early September than in May, June, and July. Condition declined from early September to October and early November–the latter period the time of most active spawning. Spawning itself was accompanied by an additional loss of about 12 per cent of the body weight of females and of somewhat less than 2 per cent of the weight of males. Analysis of the variations of K within a group that was homogeneous with respect to age, sex, maturity, and time of collection revealed that a net of a particular mesh size tends to take the heavier of the shorter fish and the lighter of the longer fish within its range of effectiveness. Among fish of the same length the values of K tended to increase with increase in the mesh size of the nets employed for their capture. Practically all fish in the samples were mature (only 11 immature in more than 6,000). These “immature” fish were probably “non-functional” since all of them approached or exceeded the average length of the mature kiyis. Females were strongly predominant in the collections at all seasons but were relatively more plentiful during the summer (90 per cent of the total) than during the spawning period (75 per cent). Possible factors contributing to this predominance of females and to the change in the sex ratio at the spawning season were discussed. A decrease in the relative abundance of males with increase in age appears to be characteristic of the kiyi. This decrease indicates a differential mortality of th sexes (greater relative destruction of males in the spawning period when they are unusually abundant or a greater natural mortality rate for the males). Current fishery regulations on mesh size and closed seasons afford the kiyi good protection but offer no guarantee against depletion from too intensive fishing.

Assessing self-care and social function using a computer adaptive testing version of the pediatric evaluation of disability inventory.

PubMed

Coster, Wendy J; Haley, Stephen M; Ni, Pengsheng; Dumas, Helene M; Fragala-Pinkham, Maria A

2008-04-01

To examine score agreement, validity, precision, and response burden of a prototype computer adaptive testing (CAT) version of the self-care and social function scales of the Pediatric Evaluation of Disability Inventory compared with the full-length version of these scales. Computer simulation analysis of cross-sectional and longitudinal retrospective data; cross-sectional prospective study. Pediatric rehabilitation hospital, including inpatient acute rehabilitation, day school program, outpatient clinics; community-based day care, preschool, and children's homes. Children with disabilities (n=469) and 412 children with no disabilities (analytic sample); 38 children with disabilities and 35 children without disabilities (cross-validation sample). Not applicable. Summary scores from prototype CAT applications of each scale using 15-, 10-, and 5-item stopping rules; scores from the full-length self-care and social function scales; time (in seconds) to complete assessments and respondent ratings of burden. Scores from both computer simulations and field administration of the prototype CATs were highly consistent with scores from full-length administration (r range, .94-.99). Using computer simulation of retrospective data, discriminant validity, and sensitivity to change of the CATs closely approximated that of the full-length scales, especially when the 15- and 10-item stopping rules were applied. In the cross-validation study the time to administer both CATs was 4 minutes, compared with over 16 minutes to complete the full-length scales. Self-care and social function score estimates from CAT administration are highly comparable with those obtained from full-length scale administration, with small losses in validity and precision and substantial decreases in administration time.

The Efficacy of Eye Movement Desensitization and Reprocessing in Children and Adults Who Have Experienced Complex Childhood Trauma: A Systematic Review of Randomized Controlled Trials.

PubMed

Chen, Runsen; Gillespie, Amy; Zhao, Yanhui; Xi, Yingjun; Ren, Yanping; McLean, Loyola

2018-01-01

Background: Survivors of complex childhood trauma (CT) such as sexual abuse show poorer outcomes compared to single event trauma survivors. A growing number of studies investigate Eye Movement Desensitization and Reprocessing (EMDR) treatment for posttraumatic stress disorder (PTSD), but no systematic reviews have focused on EMDR treatment for CT as an intervention for both adults and children. This study therefore systematically reviewed all randomized controlled trials (RCTs) evaluating the effect of EMDR on PTSD symptoms in adults and children exposed to CT. Methods: Databases including PubMed, Web of Science, and PsycINFO were searched in October 2017. Randomized controlled trials which recruited adult and children with experience of CT, which compared EMDR to alternative treatments or control conditions, and which measured PTSD symptoms were included. Study methodology quality was evaluated with Platinum Standard scale. Results: Six eligible RCTs of 251 participants were included in this systematic review. The results indicated that EMDR was associated with reductions in PTSD symptoms, depression and/or anxiety both post-treatment and at follow-up compared with all other alternative therapies (cognitive behavior therapy, individual/group therapy and fluoxetine) and control treatment (pill placebo, active listening, EMDR delayed treatment, and treatment as usual). However, studies suffered from significant heterogeneity in study populations, length of EMDR treatment, length of follow-up, comparison groups, and outcome measures. One study had a high risk of bias. Discussion: This systematic review suggests that there is growing evidence to support the clinical efficacy of EMDR in treating CT in both children and adults. However, conclusions are limited by the small number of heterogenous trials. Further RCTs with standardized methodologies, as well as studies addressing real world challenges in treating CT are required.

The Efficacy of Eye Movement Desensitization and Reprocessing in Children and Adults Who Have Experienced Complex Childhood Trauma: A Systematic Review of Randomized Controlled Trials

PubMed Central

Chen, Runsen; Gillespie, Amy; Zhao, Yanhui; Xi, Yingjun; Ren, Yanping; McLean, Loyola

2018-01-01

Background: Survivors of complex childhood trauma (CT) such as sexual abuse show poorer outcomes compared to single event trauma survivors. A growing number of studies investigate Eye Movement Desensitization and Reprocessing (EMDR) treatment for posttraumatic stress disorder (PTSD), but no systematic reviews have focused on EMDR treatment for CT as an intervention for both adults and children. This study therefore systematically reviewed all randomized controlled trials (RCTs) evaluating the effect of EMDR on PTSD symptoms in adults and children exposed to CT. Methods: Databases including PubMed, Web of Science, and PsycINFO were searched in October 2017. Randomized controlled trials which recruited adult and children with experience of CT, which compared EMDR to alternative treatments or control conditions, and which measured PTSD symptoms were included. Study methodology quality was evaluated with Platinum Standard scale. Results: Six eligible RCTs of 251 participants were included in this systematic review. The results indicated that EMDR was associated with reductions in PTSD symptoms, depression and/or anxiety both post-treatment and at follow-up compared with all other alternative therapies (cognitive behavior therapy, individual/group therapy and fluoxetine) and control treatment (pill placebo, active listening, EMDR delayed treatment, and treatment as usual). However, studies suffered from significant heterogeneity in study populations, length of EMDR treatment, length of follow-up, comparison groups, and outcome measures. One study had a high risk of bias. Discussion: This systematic review suggests that there is growing evidence to support the clinical efficacy of EMDR in treating CT in both children and adults. However, conclusions are limited by the small number of heterogenous trials. Further RCTs with standardized methodologies, as well as studies addressing real world challenges in treating CT are required. PMID:29695993

Local order and crystallization of dense polydisperse hard spheres

NASA Astrophysics Data System (ADS)

Coslovich, Daniele; Ozawa, Misaki; Berthier, Ludovic

2018-04-01

Computer simulations give precious insight into the microscopic behavior of supercooled liquids and glasses, but their typical time scales are orders of magnitude shorter than the experimentally relevant ones. We recently closed this gap for a class of models of size polydisperse fluids, which we successfully equilibrate beyond laboratory time scales by means of the swap Monte Carlo algorithm. In this contribution, we study the interplay between compositional and geometric local orders in a model of polydisperse hard spheres equilibrated with this algorithm. Local compositional order has a weak state dependence, while local geometric order associated to icosahedral arrangements grows more markedly but only at very high density. We quantify the correlation lengths and the degree of sphericity associated to icosahedral structures and compare these results to those for the Wahnström Lennard-Jones mixture. Finally, we analyze the structure of very dense samples that partially crystallized following a pattern incompatible with conventional fractionation scenarios. The crystal structure has the symmetry of aluminum diboride and involves a subset of small and large particles with size ratio approximately equal to 0.5.

Stem Cells, Patterning and Regeneration in Planarians: Self-Organization at the Organismal Scale.

PubMed

Rink, Jochen C

2018-01-01

The establishment of size and shape remains a fundamental challenge in biological research that planarian flatworms uniquely epitomize. Planarians can regenerate complete and perfectly proportioned animals from tiny and arbitrarily shaped tissue pieces; they continuously renew all organismal cell types from abundant pluripotent stem cells, yet maintain shape and anatomy in the face of constant turnover; they grow when feeding and literally degrow when starving, while scaling form and function over as much as a 40-fold range in body length or an 800-fold change in total cell numbers. This review provides a broad overview of the current understanding of the planarian stem cell system, the mechanisms that pattern the planarian body plan and how the interplay between patterning signals and cell fate choices orchestrates regeneration. What emerges is a conceptual framework for the maintenance and regeneration of the planarian body plan on basis of the interplay between pluripotent stem cells and self-organizing patterns and further, the general utility of planarians as model system for the mechanistic basis of size and shape.

Atomically precise lateral modulation of a two-dimensional electron liquid in anatase TiO 2 thin films

DOE PAGES

Wang, Zhiming; Zhong, Z.; Walker, S. McKeown; ...

2017-03-10

Engineering the electronic band structure of two-dimensional electron liquids (2DELs) confined at the surface or interface of transition metal oxides is key to unlocking their full potential. Here we describe a new approach to tailoring the electronic structure of an oxide surface 2DEL demonstrating the lateral modulation of electronic states with atomic scale precision on an unprecedented length scale comparable to the Fermi wavelength. To this end, we use pulsed laser deposition to grow anatase TiO 2 films terminated by a (1 x 4) in-plane surface reconstruction. Employing photo-stimulated chemical surface doping we induce 2DELs with tunable carrier densities thatmore » are confined within a few TiO 2 layers below the surface. Subsequent in situ angle resolved photoemission experiments demonstrate that the (1 x 4) surface reconstruction provides a periodic lateral perturbation of the electron liquid. Furthermore, this causes strong backfolding of the electronic bands, opening of unidirectional gaps and a saddle point singularity in the density of states near the chemical potential.« less

Monitoring and modeling of sinkhole-related subsidence in west-central Florida mapped from InSAR and surface observations

NASA Astrophysics Data System (ADS)

Kiflu, H.; Oliver-Cabrera, T.; Robinson, T.; Wdowinski, S.; Kruse, S.

2017-12-01

Sinkholes in Florida cause millions of dollars in damage to infrastructure each year. Methods of early detection of sinkhole-related subsidence are clearly desirable. We have completed two years of monitoring of selected sinkhole-prone areas in west central Florida with XXX data and analysis with XXX algorithms. Filters for selecting targets with high signal-to-noise ratio and subsidence over this time window (XX-2015-XX-2017) are being used to select sites for ground study. A subset of the buildings with InSAR-detected subsidence indicated show clear structural indications of subsidence in the form of cracks in walls and roofs. Comsol Multiphysics models have been developed to describe subsidence at the rates identified from the InSAR analysis (a few mm/year) and on spatial scales observed from surface observations, including structural deformation of buildings and ground penetrating radar images of subsurface deformation (length scales of meters to tens of meters). These models assume cylindrical symmetry and deformation of elastic and poroelastic layers over a growing sphering void.

The dynamics of oceanic fronts. Part 1: The Gulf Stream

NASA Technical Reports Server (NTRS)

Kao, T. W.

1970-01-01

The establishment and maintenance of the mean hydrographic properties of large scale density fronts in the upper ocean is considered. The dynamics is studied by posing an initial value problem starting with a near surface discharge of buoyant water with a prescribed density deficit into an ambient stationary fluid of uniform density. The full time dependent diffusion and Navier-Stokes equations for a constant Coriolis parameter are used in this study. Scaling analysis reveals three independent length scales of the problem, namely a radius of deformation or inertial length scale, Lo, a buoyance length scale, ho, and a diffusive length scale, hv. Two basic dimensionless parameters are then formed from these length scales, the thermal (or more precisely, the densimetric) Rossby number, Ro = Lo/ho and the Ekman number, E = hv/ho. The governing equations are then suitably scaled and the resulting normalized equations are shown to depend on E alone for problems of oceanic interest. Under this scaling, the solutions are similar for all Ro. It is also shown that 1/Ro is a measure of the frontal slope. The governing equations are solved numerically and the scaling analysis is confirmed. The solution indicates that an equilibrium state is established. The front can then be rendered stationary by a barotropic current from a larger scale along-front pressure gradient. In that quasisteady state, and for small values of E, the main thermocline and the inclined isopycnics forming the front have evolved, together with the along-front jet. Conservation of potential vorticity is also obtained in the light water pool. The surface jet exhibits anticyclonic shear in the light water pool and cyclonic shear across the front.

Rating disease progression of Friedreich’s ataxia by the International Cooperative Ataxia Rating Scale: analysis of a 603-patient database

PubMed Central

Coppard, Nicholas; Cooper, Jonathon M.; Delatycki, Martin B.; Dürr, Alexandra; Di Prospero, Nicholas A.; Giunti, Paola; Lynch, David R.; Schulz, J. B.; Rummey, Christian; Meier, Thomas

2013-01-01

The aim of this cross-sectional study was to analyse disease progression in Friedreich’s ataxia as measured by the International Cooperative Ataxia Rating Scale. Single ratings from 603 patients with Friedreich’s ataxia were analysed as a function of disease duration, age of onset and GAA repeat lengths. The relative contribution of items and subscales to the total score was studied as a function of disease progression. In addition, the scaling properties were assessed using standard statistical measures. Average total scale progression per year depends on the age of disease onset, the time since diagnosis and the GAA repeat length. The age of onset inversely correlates with increased GAA repeat length. For patients with an age of onset ≤14 years associated with a longer repeat length, the average yearly rate of decline was 2.5 ± 0.18 points in the total International Cooperative Ataxia Rating Scale for the first 20 years of disease duration, whereas patients with a later onset progress more slowly (1.8 ± 0.27 points/year). Ceiling effects in posture, gait and lower limb scale items lead to a reduced sensitivity of the scale in the severely affected population with a total score of >60 points. Psychometric scaling analysis shows generally favourable properties for the total scale, but the subscale grouping could be improved. This cross-sectional study provides a detailed characterization of the International Cooperative Ataxia Rating Scale. The analysis further provides rates of change separated for patients with early and late disease onset, which is driven by the GAA repeat length. Differences in the subscale dynamics merit consideration in the design of future clinical trials applying this scale as a neurological assessment instrument in Friedreich’s ataxia. PMID:23365101

A Two-length Scale Turbulence Model for Single-phase Multi-fluid Mixing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwarzkopf, J. D.; Livescu, D.; Baltzer, J. R.

2015-09-08

A two-length scale, second moment turbulence model (Reynolds averaged Navier-Stokes, RANS) is proposed to capture a wide variety of single-phase flows, spanning from incompressible flows with single fluids and mixtures of different density fluids (variable density flows) to flows over shock waves. The two-length scale model was developed to address an inconsistency present in the single-length scale models, e.g. the inability to match both variable density homogeneous Rayleigh-Taylor turbulence and Rayleigh-Taylor induced turbulence, as well as the inability to match both homogeneous shear and free shear flows. The two-length scale model focuses on separating the decay and transport length scales,more » as the two physical processes are generally different in inhomogeneous turbulence. This allows reasonable comparisons with statistics and spreading rates over such a wide range of turbulent flows using a common set of model coefficients. The specific canonical flows considered for calibrating the model include homogeneous shear, single-phase incompressible shear driven turbulence, variable density homogeneous Rayleigh-Taylor turbulence, Rayleigh-Taylor induced turbulence, and shocked isotropic turbulence. The second moment model shows to compare reasonably well with direct numerical simulations (DNS), experiments, and theory in most cases. The model was then applied to variable density shear layer and shock tube data and shows to be in reasonable agreement with DNS and experiments. Additionally, the importance of using DNS to calibrate and assess RANS type turbulence models is highlighted.« less

Microphase separation of comb copolymers with two different lengths of side chains

NASA Astrophysics Data System (ADS)

Aliev, M. A.; Kuzminyh, N. Yu.

2009-10-01

The phase behavior of the monodisperse AB comb copolymer melt contained the macromolecules of special architecture is discussed. Each macromolecule is assumed to be composed of two comb blocks which differ in numbers of side chains and numbers of monomer units in these chains. It is shown (by analysis of the structure factor of the melt) that microphase separation at two different length scales in the melt is possible. The large and small length scales correspond to separation between comb blocks and separation between monomer units in repeating fragments of blocks, respectively. The classification diagrams indicated which length scale is favored for a given parameters of chemical structure of macromolecules are constructed.

Laser powder bed fusion additive manufacturing of metals; physics, computational, and materials challenges

DOE PAGES

King, W. E.; Anderson, A. T.; Ferencz, R. M.; ...

2015-12-29

The production of metal parts via laser powder bed fusion additive manufacturing is growing exponentially. However, the transition of this technology from production of prototypes to production of critical parts is hindered by a lack of confidence in the quality of the part. Confidence can be established via a fundamental understanding of the physics of the process. It is generally accepted that this understanding will be increasingly achieved through modeling and simulation. However, there are significant physics, computational, and materials challenges stemming from the broad range of length and time scales and temperature ranges associated with the process. In thismore » study, we review the current state of the art and describe the challenges that need to be met to achieve the desired fundamental understanding of the physics of the process.« less

Slow crack growth: Models and experiments

NASA Astrophysics Data System (ADS)

Santucci, S.; Vanel, L.; Ciliberto, S.

2007-07-01

The properties of slow crack growth in brittle materials are analyzed both theoretically and experimentally. We propose a model based on a thermally activated rupture process. Considering a 2D spring network submitted to an external load and to thermal noise, we show that a preexisting crack in the network may slowly grow because of stress fluctuations. An analytical solution is found for the evolution of the crack length as a function of time, the time to rupture and the statistics of the crack jumps. These theoretical predictions are verified by studying experimentally the subcritical growth of a single crack in thin sheets of paper. A good agreement between the theoretical predictions and the experimental results is found. In particular, our model suggests that the statistical stress fluctuations trigger rupture events at a nanometric scale corresponding to the diameter of cellulose microfibrils.

Influence of C60 co-deposition on the growth kinetics of diindenoperylene-From rapid roughening to layer-by-layer growth in blended organic films

NASA Astrophysics Data System (ADS)

Lorch, C.; Novák, J.; Banerjee, R.; Weimer, S.; Dieterle, J.; Frank, C.; Hinderhofer, A.; Gerlach, A.; Carla, F.; Schreiber, F.

2017-02-01

We investigated the growth of the two phase-separating materials diindenoperylene (DIP) and buckminsterfullerene C60 with different mixing ratio in real-time and in situ by X-ray scattering experiments. We found that at room temperature, mixtures with an excess of DIP show a growth mode which is very close to the perfect layer-by-layer limit with DIP crystallites forming over the entire film thickness. An unexpected increase in the island size is observed for these mixtures as a function of film thickness. On the other hand, equimolar and C60 dominated mixtures grow with poor crystallinity but form very smooth films. Additionally, it is observed that higher substrate temperatures lead to an increase in the length scale of phase separation with film thickness.

Early Onset of Kinetic Roughening due to a Finite Step Width in Hematin Crystallization

NASA Astrophysics Data System (ADS)

Olafson, Katy N.; Rimer, Jeffrey D.; Vekilov, Peter G.

2017-11-01

The structure of the interface of a growing crystal with its nutrient phase largely determines the growth dynamics. We demonstrate that hematin crystals, crucial for the survival of malaria parasites, transition from faceted to rough growth interfaces at increasing thermodynamic supersaturation Δ μ . Contrary to theoretical predictions and previous observations, this transition occurs at moderate values of Δ μ . Moreover, surface roughness varies nonmonotonically with Δ μ , and the rate constant for rough growth is slower than that resulting from nucleation and spreading of layers. We attribute these unexpected behaviors to the dynamics of step growth dominated by surface diffusion and the loss of identity of nuclei separated by less than the step width w . We put forth a general criterion for the onset of kinetic roughening using w as a critical length scale.

Hydrodynamics of electrons in graphene.

PubMed

Lucas, Andrew; Fong, Kin Chung

2018-02-07

Generic interacting many-body quantum systems are believed to behave as classical fluids on long time and length scales. Due to rapid progress in growing exceptionally pure crystals, we are now able to experimentally observe this collective motion of electrons in solid-state systems, including graphene. We present a review of recent progress in understanding the hydrodynamic limit of electronic motion in graphene, written for physicists from diverse communities. We begin by discussing the 'phase diagram' of graphene, and the inevitable presence of impurities and phonons in experimental systems. We derive hydrodynamics, both from a phenomenological perspective and using kinetic theory. We then describe how hydrodynamic electron flow is visible in electronic transport measurements. Although we focus on graphene in this review, the broader framework naturally generalizes to other materials. We assume only basic knowledge of condensed matter physics, and no prior knowledge of hydrodynamics.

Hydrodynamics of electrons in graphene

NASA Astrophysics Data System (ADS)

Lucas, Andrew; Chung Fong, Kin

2018-02-01

Generic interacting many-body quantum systems are believed to behave as classical fluids on long time and length scales. Due to rapid progress in growing exceptionally pure crystals, we are now able to experimentally observe this collective motion of electrons in solid-state systems, including graphene. We present a review of recent progress in understanding the hydrodynamic limit of electronic motion in graphene, written for physicists from diverse communities. We begin by discussing the ‘phase diagram’ of graphene, and the inevitable presence of impurities and phonons in experimental systems. We derive hydrodynamics, both from a phenomenological perspective and using kinetic theory. We then describe how hydrodynamic electron flow is visible in electronic transport measurements. Although we focus on graphene in this review, the broader framework naturally generalizes to other materials. We assume only basic knowledge of condensed matter physics, and no prior knowledge of hydrodynamics.

Radial distribution of dust, stars, gas, and star-formation rate in DustPedia⋆ face-on galaxies

NASA Astrophysics Data System (ADS)

Casasola, V.; Cassarà, L. P.; Bianchi, S.; Verstocken, S.; Xilouris, E.; Magrini, L.; Smith, M. W. L.; De Looze, I.; Galametz, M.; Madden, S. C.; Baes, M.; Clark, C.; Davies, J.; De Vis, P.; Evans, R.; Fritz, J.; Galliano, F.; Jones, A. P.; Mosenkov, A. V.; Viaene, S.; Ysard, N.

2017-09-01

Aims: The purpose of this work is the characterization of the radial distribution of dust, stars, gas, and star-formation rate (SFR) in a sub-sample of 18 face-on spiral galaxies extracted from the DustPedia sample. Methods: This study is performed by exploiting the multi-wavelength DustPedia database, from ultraviolet (UV) to sub-millimeter bands, in addition to molecular (12CO) and atomic (Hi) gas maps and metallicity abundance information available in the literature. We fitted the surface-brightness profiles of the tracers of dust and stars, the mass surface-density profiles of dust, stars, molecular gas, and total gas, and the SFR surface-density profiles with an exponential curve and derived their scale-lengths. We also developed a method to solve for the CO-to-H2 conversion factor (αCO) per galaxy by using dust- and gas-mass profiles. Results: Although each galaxy has its own peculiar behavior, we identified a common trend of the exponential scale-lengths versus wavelength. On average, the scale-lengths normalized to the B-band 25 mag/arcsec2 radius decrease from UV to 70 μm, from 0.4 to 0.2, and then increase back up to 0.3 at 500 microns. The main result is that, on average, the dust-mass surface-density scale-length is about 1.8 times the stellar one derived from IRAC data and the 3.6 μm surface brightness, and close to that in the UV. We found a mild dependence of the scale-lengths on the Hubble stage T: the scale-lengths of the Herschel bands and the 3.6 μm scale-length tend to increase from earlier to later types, the scale-length at 70 μm tends to be smaller than that at longer sub-mm wavelength with ratios between longer sub-mm wavelengths and 70 μm that decrease with increasing T. The scale-length ratio of SFR and stars shows a weak increasing trend towards later types. Our αCO determinations are in the range (0.3-9) M⊙ pc-2 (K km s-1)-1, almost invariant by using a fixed dust-to-gas ratio mass (DGR) or a DGR depending on metallicity gradient. DustPedia is a project funded by the EU under the heading "Exploitation of space science and exploration data". It has the primary goal of exploiting existing data in the Herschel Space Observatory and Planck Telescope databases.

Evolution of Local Microstructures: Spatial Instabilities of Coarsening Clusters

NASA Technical Reports Server (NTRS)

Frazier, Donald O.

1999-01-01

This work examines the diffusional growth of discrete phase particles dispersed within a matrix. Engineering materials are microstructurally heterogeneous, and the details of the microstructure determine how well that material performs in a given application. Critical to the development of designing multiphase microstructures with long-term stability is the process of Ostwald ripening. Ripening, or phase coarsening, is a diffusion-limited process which arises in polydisperse multiphase materials. Growth and dissolution occur because fluxes of solute, driven by chemical potential gradients at the interfaces of the dispersed phase material, depend on particle size. The kinetics of these processes are "competitive," dictating that larger particles grow at the expense of smaller ones, overall leading to an increase of the average particle size. The classical treatment of phase coarsening was done by Todes, Lifshitz, and Slyozov, (TLS) in the limit of zero volume fraction, V(sub v), of the dispersed phase. Since the publication of TLS theory there have been numerous investigations, many of which sought to describe the kinetic scaling behavior over a 0 range of volume fractions. Some studies in the literature report that the relative increase in coarsening rate at low (but not zero) volume fractions compared to that predicted by TLS is proportional to v(sub v)(exp 1/2), whereas others suggcest V(sub v)(exp 1/3). This issue has been resolved recently by simulation studies at low volume fractions in three dimensions by members of the Rensselaer/MSFC team. Our studies of ripening behavior using large-scale numerical simulations suggest that although there are different circumstances which can lead to either scaling law, the most important length scale at low volume fractions is the diffusional analog of the Debye screening length. The numerical simulations we employed exploit the use of a recently developed "snapshot" technique, and identifies the nature of the coarsening dynamics at various volume fractions. Preliminary results of numerical and experimental investigations, focused on the growth of finite particle clusters, provide important insight into the nature of the transition between the two scaling regimes. The companion microgravity experiment centers on the growth within finite particle clusters, and follows the temporal dynamics driving microstructural evolution, using holography.

Nearest-Neighbor Distances and Aggregative Effects in Turbulence

NASA Astrophysics Data System (ADS)

Lanerolle, Lyon W. J.; Rothschild, B. J.; Yeung, P. K.

2000-11-01

The dispersive nature of turbulence which causes fluid elements to move apart (on average) is well known. Here we study another facet of turbulent mixing relevant to marine population dynamics - on how small organisms (approximated by fluid particles) are brought close to each other and allowed to interact. The crucial role played by the small scales in this process allows us to use direct numerical simulations of stationary isotropic turbulence, here with Taylor-scale Reynolds numbers (R_λ) from 38 to 91. We study the evolution of the Nearest-Neighbor Distances (NND) for collections of fluid particles initially located randomly in space satisfying Poisson-type distributions with mean values from 0.5 to 2.0 Kolmogorov length scales. Our results show that as particles begin to disperse on average, some also begin to aggregate in space. In particular, we find that (i) a significant proportion of particles are closer to each other than if their NNDs were randomly distributed, (ii) aggregative effects become stronger with R_λ, and (iii) although the mean value of NND grows monotonically with time in Kolmogorov variables, the growth rates are slower at higher R_λ. These results may assist in explaining the ``patchiness'' in plankton distributions observed in biological oceanography. Further details are given in B. J. Rothschild et al., The Biophysical Interpretation of Spatial Effects of Small-scale Turbulent Flow in the Ocean (paper in prep.).

High flexibility of DNA on short length scales probed by atomic force microscopy.

PubMed

Wiggins, Paul A; van der Heijden, Thijn; Moreno-Herrero, Fernando; Spakowitz, Andrew; Phillips, Rob; Widom, Jonathan; Dekker, Cees; Nelson, Philip C

2006-11-01

The mechanics of DNA bending on intermediate length scales (5-100 nm) plays a key role in many cellular processes, and is also important in the fabrication of artificial DNA structures, but previous experimental studies of DNA mechanics have focused on longer length scales than these. We use high-resolution atomic force microscopy on individual DNA molecules to obtain a direct measurement of the bending energy function appropriate for scales down to 5 nm. Our measurements imply that the elastic energy of highly bent DNA conformations is lower than predicted by classical elasticity models such as the worm-like chain (WLC) model. For example, we found that on short length scales, spontaneous large-angle bends are many times more prevalent than predicted by the WLC model. We test our data and model with an interlocking set of consistency checks. Our analysis also shows how our model is compatible with previous experiments, which have sometimes been viewed as confirming the WLC.

Scale effects in crystal plasticity

NASA Astrophysics Data System (ADS)

Padubidri Janardhanachar, Guruprasad

The goal of this research work is to further the understanding of crystal plasticity, particularly at reduced structural and material length scales. Fundamental understanding of plasticity is central to various challenges facing design and manufacturing of materials for structural and electronic device applications. The development of microstructurally tailored advanced metallic materials with enhanced mechanical properties that can withstand extremes in stress, strain, and temperature, will aid in increasing the efficiency of power generating systems by allowing them to work at higher temperatures and pressures. High specific strength materials can lead to low fuel consumption in transport vehicles. Experiments have shown that enhanced mechanical properties can be obtained in materials by constraining their size, microstructure (e.g. grain size), or both for various applications. For the successful design of these materials, it is necessary to have a thorough understanding of the influence of different length scales and evolving microstructure on the overall behavior. In this study, distinction is made between the effect of structural and material length scale on the mechanical behavior of materials. A length scale associated with an underlying physical mechanism influencing the mechanical behavior can overlap with either structural length scales or material length scales. If it overlaps with structural length scales, then the material is said to be dimensionally constrained. On the other hand, if it overlaps with material length scales, for example grain size, then the material is said to be microstructurally constrained. The objectives of this research work are: (1) to investigate scale and size effects due to dimensional constraints; (2) to investigate size effects due to microstructural constraints; and (3) to develop a size dependent hardening model through coarse graining of dislocation dynamics. A discrete dislocation dynamics (DDD) framework where the scale of analysis is intermediate between a fully discretized (e.g. atomistic) and fully continuum is used for this study. This mesoscale tool allows to address all the stated objectives of this study within a single framework. Within this framework, the effect of structural and the material length scales are naturally accounted for in the simulations and need not be specified in an ad hoc manner, as in some continuum models. It holds the promise of connecting the evolution of the defect microstructure to the effective response of the crystal. Further, it provides useful information to develop physically motivated continuum models to model size effects in materials. The contributions of this study are: (a) provides a new interpretation of mechanical size effect due to only dimensional constraint using DDD; (b) a development of an experimentally validated DDD simulation methodology to model Cu micropillars; (c) a coarse graining technique using DDD to develop a phenomenological model to capture size effect on strain hardening; and (d) a development of a DDD framework for polycrystals to investigate grain size effect on yield strength and strain hardening.

Biological and environmental controls on tree transpiration in a suburban landscape

NASA Astrophysics Data System (ADS)

Peters, Emily B.; McFadden, Joseph P.; Montgomery, Rebecca A.

2010-12-01

Tree transpiration provides a variety of ecosystem services in urban areas, including amelioration of urban heat island effects and storm water management. Tree species vary in the magnitude and seasonality of transpiration owing to differences in physiology, response to climate, and biophysical characteristics, thereby complicating efforts to manage evapotranspiration at city scales. We report sap flux measurements during the 2007 and 2008 growing seasons for dominant tree species in a suburban neighborhood of Minneapolis-Saint Paul, Minnesota, USA. Evergreen needleleaf trees had significantly higher growing season means and annual transpiration per unit canopy area (1.90 kg H2O m-2 d-1 and 307 kg H2O m-2 yr-1, respectively) than deciduous broadleaf trees (1.11 kg H2O m-2 d-1 and 153 kg H2O m-2 yr-1, respectively) because of a smaller projected canopy area (31.1 and 73.6 m2, respectively), a higher leaf area index (8.8 and 5.5 m2 m-2, respectively), and a longer growth season (8 and 4 months, respectively). Measurements also showed patterns consistent with the species' differences in xylem anatomy (conifer, ring porous, and diffuse porous). As the growing season progressed, conifer and diffuse porous genera had increased stomatal regulation to high vapor pressure deficit, while ring porous genera maintained greater and more constant stomatal regulation. These results suggest that evaporative responses to climate change in urban ecosystems will depend in part on species composition. Overall, plant functional type differences in canopy structure and growing season length were most important in explaining species' differences in midsummer and annual transpiration, offering an approach to predicting the evapotranspiration component of urban water budgets.

Changes in airway dimensions following functional appliances in growing patients with skeletal class II malocclusion: A systematic review and meta-analysis.

PubMed

Xiang, MingLi; Hu, Bo; Liu, Yang; Sun, Jicheng; Song, Jinlin

2017-06-01

The purpose of the study was to evaluate the treatment effects of functional appliances (FAs) on upper airway dimensions in growing Class II patients with mandibular retrognathism. Five databases and the references of identified articles were electronically searched for relevant studies that met our eligibility criteria. The quality of the included studies was assessed using the Newcastle-Ottawa Scale. The effects of FAs on airway dimensions were combined by meta-analysis using the RevMan and STATA software. Seven studies (177 treated patients with mean age: 11.48 years and 153 untreated controls with mean age: 11.20 years) were included in this review. Compared to the control group, the oropharyngeal dimensions in the treatment group subjects were significantly increased at the superior pharyngeal space (MD = 1.73 mm/year, 95% CI, 1.13-2.32 mm, P < 0.00001), middle pharyngeal space (MD = 1.68 mm/year, 95% CI, 1.13-2.23 mm, P < 0.00001) and inferior pharyngeal space (MD = 1.21 mm/year, 95% CI, 0.48-1.95 mm, P = 0.001). No significant differences were found in nasopharyngeal and hypopharyngeal dimensions and the position of hyoid bone (P > 0.05). Soft palate length and soft palate inclination were improved significantly in the treatment group (P < 0.05). The results showed that FAs can enlarge the upper airway dimensions, specifically in the oropharyngeal region, in growing subjects with skeletal Class II malocclusion. The early intervention for mandibular retrognathism with FAs may help enlarge the airway dimensions and decrease potential risk of obstructive sleep apnea syndrome for growing patients in the future. Copyright © 2017 Elsevier B.V. All rights reserved.

Aerosol based direct-write micro-additive fabrication method for sub-mm 3D metal-dielectric structures

NASA Astrophysics Data System (ADS)

Rahman, Taibur; Renaud, Luke; Heo, Deuk; Renn, Michael; Panat, Rahul

2015-10-01

The fabrication of 3D metal-dielectric structures at sub-mm length scale is highly important in order to realize low-loss passives and GHz wavelength antennas with applications in wearable and Internet-of-Things (IoT) devices. The inherent 2D nature of lithographic processes severely limits the available manufacturing routes to fabricate 3D structures. Further, the lithographic processes are subtractive and require the use of environmentally harmful chemicals. In this letter, we demonstrate an additive manufacturing method to fabricate 3D metal-dielectric structures at sub-mm length scale. A UV curable dielectric is dispensed from an Aerosol Jet system at 10-100 µm length scale and instantaneously cured to build complex 3D shapes at a length scale  <1 mm. A metal nanoparticle ink is then dispensed over the 3D dielectric using a combination of jetting action and tilted dispense head, also using the Aerosol Jet technique and at a length scale 10-100 µm, followed by the nanoparticle sintering. Simulation studies are carried out to demonstrate the feasibility of using such structures as mm-wave antennas. The manufacturing method described in this letter opens up the possibility of fabricating an entirely new class of custom-shaped 3D structures at a sub-mm length scale with potential applications in 3D antennas and passives.

Accurate aging of juvenile salmonids using fork lengths

USGS Publications Warehouse

Sethi, Suresh; Gerken, Jonathon; Ashline, Joshua

2017-01-01

Juvenile salmon life history strategies, survival, and habitat interactions may vary by age cohort. However, aging individual juvenile fish using scale reading is time consuming and can be error prone. Fork length data are routinely measured while sampling juvenile salmonids. We explore the performance of aging juvenile fish based solely on fork length data, using finite Gaussian mixture models to describe multimodal size distributions and estimate optimal age-discriminating length thresholds. Fork length-based ages are compared against a validation set of juvenile coho salmon, Oncorynchus kisutch, aged by scales. Results for juvenile coho salmon indicate greater than 95% accuracy can be achieved by aging fish using length thresholds estimated from mixture models. Highest accuracy is achieved when aged fish are compared to length thresholds generated from samples from the same drainage, time of year, and habitat type (lentic versus lotic), although relatively high aging accuracy can still be achieved when thresholds are extrapolated to fish from populations in different years or drainages. Fork length-based aging thresholds are applicable for taxa for which multiple age cohorts coexist sympatrically. Where applicable, the method of aging individual fish is relatively quick to implement and can avoid ager interpretation bias common in scale-based aging.

Porotic paradox: distribution of cortical bone pore sizes at nano- and micro-levels in healthy vs. fragile human bone.

PubMed

Milovanovic, Petar; Vukovic, Zorica; Antonijevic, Djordje; Djonic, Danijela; Zivkovic, Vladimir; Nikolic, Slobodan; Djuric, Marija

2017-05-01

Bone is a remarkable biological nanocomposite material showing peculiar hierarchical organization from smaller (nano, micro) to larger (macro) length scales. Increased material porosity is considered as the main feature of fragile bone at larger length-scales. However, there is a shortage of quantitative information on bone porosity at smaller length-scales, as well as on the distribution of pore sizes in healthy vs. fragile bone. Therefore, here we investigated how healthy and fragile bones differ in pore volume and pore size distribution patterns, considering a wide range of mostly neglected pore sizes from nano to micron-length scales (7.5 to 15000 nm). Cortical bone specimens from four young healthy women (age: 35 ± 6 years) and five women with bone fracture (age: 82 ± 5 years) were analyzed by mercury porosimetry. Our findings showed that, surprisingly, fragile bone demonstrated lower pore volume at the measured scales. Furtnermore, pore size distribution showed differential patterns between healthy and fragile bones, where healthy bone showed especially high proportion of pores between 200 and 15000 nm. Therefore, although fragile bones are known for increased porosity at macroscopic level and level of tens or hundreds of microns as firmly established in the literature, our study with a unique assessment range of nano-to micron-sized pores reveal that osteoporosis does not imply increased porosity at all length scales. Our thorough assessment of bone porosity reveals a specific distribution of porosities at smaller length-scales and contributes to proper understanding of bone structure which is important for designing new biomimetic bone substitute materials.

Assessing self-care and social function using a computer adaptive testing version of the Pediatric Evaluation of Disability Inventory Accepted for Publication, Archives of Physical Medicine and Rehabilitation

PubMed Central

Coster, Wendy J.; Haley, Stephen M.; Ni, Pengsheng; Dumas, Helene M.; Fragala-Pinkham, Maria A.

2009-01-01

Objective To examine score agreement, validity, precision, and response burden of a prototype computer adaptive testing (CAT) version of the Self-Care and Social Function scales of the Pediatric Evaluation of Disability Inventory (PEDI) compared to the full-length version of these scales. Design Computer simulation analysis of cross-sectional and longitudinal retrospective data; cross-sectional prospective study. Settings Pediatric rehabilitation hospital, including inpatient acute rehabilitation, day school program, outpatient clinics; community-based day care, preschool, and children’s homes. Participants Four hundred sixty-nine children with disabilities and 412 children with no disabilities (analytic sample); 38 children with disabilities and 35 children without disabilities (cross-validation sample). Interventions Not applicable. Main Outcome Measures Summary scores from prototype CAT applications of each scale using 15-, 10-, and 5-item stopping rules; scores from the full-length Self-Care and Social Function scales; time (in seconds) to complete assessments and respondent ratings of burden. Results Scores from both computer simulations and field administration of the prototype CATs were highly consistent with scores from full-length administration (all r’s between .94 and .99). Using computer simulation of retrospective data, discriminant validity and sensitivity to change of the CATs closely approximated that of the full-length scales, especially when the 15- and 10-item stopping rules were applied. In the cross-validation study the time to administer both CATs was 4 minutes, compared to over 16 minutes to complete the full-length scales. Conclusions Self-care and Social Function score estimates from CAT administration are highly comparable to those obtained from full-length scale administration, with small losses in validity and precision and substantial decreases in administration time. PMID:18373991

Small-scale drivers: the importance of nutrient availability and snowmelt timing on performance of the alpine shrub Salix herbacea.

PubMed

Little, Chelsea J; Wheeler, Julia A; Sedlacek, Janosch; Cortés, Andrés J; Rixen, Christian

2016-04-01

Alpine plant communities are predicted to face range shifts and possibly extinctions with climate change. Fine-scale environmental variation such as nutrient availability or snowmelt timing may contribute to the ability of plant species to persist locally; however, variation in nutrient availability in alpine landscapes is largely unmeasured. On three mountains around Davos, Switzerland, we deployed Plant Root Simulator probes around 58 Salix herbacea plants along an elevational and microhabitat gradient to measure nutrient availability during the first 5 weeks of the summer growing season, and used in situ temperature loggers and observational data to determine date of spring snowmelt. We also visited the plants weekly to assess performance, as measured by stem number, fruiting, and herbivory damage. We found a wide snowmelt gradient which determined growing season length, as well as variations of an order of magnitude or more in the accumulation of 12 nutrients between different microhabitats. Higher nutrient availability had negative effects on most shrub performance metrics, for instance decreasing stem number and the proportion of stems producing fruits. High nutrient availability was associated with increased herbivory damage in early-melting microhabitats, but among late-emerging plants this pattern was reversed. We demonstrate that nutrient availability is highly variable in alpine settings, and that it strongly influences performance in an alpine dwarf shrub, sometimes modifying the response of shrubs to snowmelt timing. As the climate warms and human-induced nitrogen deposition continues in the Alps, these factors may contribute to patterns of local plants persistence.

Hierarchical roughness of sticky and non-sticky superhydrophobic surfaces

NASA Astrophysics Data System (ADS)

Raza, Muhammad; Kooij, Stefan; van Silfhout, Arend; Zandvliet, Harold; Poelsema, Bene

2011-11-01

The importance of superhydrophobic substrates (contact angle >150° with sliding angle <10°) in modern technology is undeniable. We present a simple colloidal route to manufacture superstructured arrays with single- and multi-length-scaled roughness to obtain sticky and non-sticky superhydrophobic surfaces. The largest length scale is provided by (multi-)layers of silica spheres (1 μm, 500nm and 150nm diameter). Decoration with gold nanoparticles (14nm, 26nm and 47nm) gives rise to a second length scale. To lower the surface energy, gold nanoparticles are functionalized with dodecanethiol and the silica spheres by perfluorooctyltriethoxysilane. The morphology was examined by helium ion microscopy (HIM), while wettability measurements were performed by using the sessile drop method. We conclude that wettability can be controlled by changing the surface chemistry and/or length scales of the structures. To achieve truly non-sticky superhydrophobic surfaces, hierarchical roughness plays a vital role.

On the physics of electron ejection from laser-irradiated overdense plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thévenet, M.; Vincenti, H.; Faure, J.

2016-06-15

Using 1D and 2D PIC simulations, we describe and model the backward ejection of electron bunches when a laser pulse reflects off an overdense plasma with a short density gradient on its front side. The dependence on the laser intensity and gradient scale length is studied. It is found that during each laser period, the incident laser pulse generates a large charge-separation field, or plasma capacitor, which accelerates an attosecond bunch of electrons toward vacuum. This process is maximized for short gradient scale lengths and collapses when the gradient scale length is comparable to the laser wavelength. We develop amore » model that reproduces the electron dynamics and the dependence on laser intensity and gradient scale length. This process is shown to be strongly linked with high harmonic generation via the Relativistic Oscillating Mirror mechanism.« less

Scale effects and morphological diversification in hindlimb segment mass proportions in neognath birds.

PubMed

Kilbourne, Brandon M

2014-01-01

In spite of considerable work on the linear proportions of limbs in amniotes, it remains unknown whether differences in scale effects between proximal and distal limb segments has the potential to influence locomotor costs in amniote lineages and how changes in the mass proportions of limbs have factored into amniote diversification. To broaden our understanding of how the mass proportions of limbs vary within amniote lineages, I collected data on hindlimb segment masses - thigh, shank, pes, tarsometatarsal segment, and digits - from 38 species of neognath birds, one of the most speciose amniote clades. I scaled each of these traits against measures of body size (body mass) and hindlimb size (hindlimb length) to test for departures from isometry. Additionally, I applied two parameters of trait evolution (Pagel's λ and δ) to understand patterns of diversification in hindlimb segment mass in neognaths. All segment masses are positively allometric with body mass. Segment masses are isometric with hindlimb length. When examining scale effects in the neognath subclade Land Birds, segment masses were again positively allometric with body mass; however, shank, pedal, and tarsometatarsal segment masses were also positively allometric with hindlimb length. Methods of branch length scaling to detect phylogenetic signal (i.e., Pagel's λ) and increasing or decreasing rates of trait change over time (i.e., Pagel's δ) suffer from wide confidence intervals, likely due to small sample size and deep divergence times. The scaling of segment masses appears to be more strongly related to the scaling of limb bone mass as opposed to length, and the scaling of hindlimb mass distribution is more a function of scale effects in limb posture than proximo-distal differences in the scaling of limb segment mass. Though negative allometry of segment masses appears to be precluded by the need for mechanically sound limbs, the positive allometry of segment masses relative to body mass may underlie scale effects in stride frequency and length between smaller and larger neognaths. While variation in linear proportions of limbs appear to be governed by developmental mechanisms, variation in mass proportions does not appear to be constrained so.

Scale effects and morphological diversification in hindlimb segment mass proportions in neognath birds

PubMed Central

2014-01-01

Introduction In spite of considerable work on the linear proportions of limbs in amniotes, it remains unknown whether differences in scale effects between proximal and distal limb segments has the potential to influence locomotor costs in amniote lineages and how changes in the mass proportions of limbs have factored into amniote diversification. To broaden our understanding of how the mass proportions of limbs vary within amniote lineages, I collected data on hindlimb segment masses – thigh, shank, pes, tarsometatarsal segment, and digits – from 38 species of neognath birds, one of the most speciose amniote clades. I scaled each of these traits against measures of body size (body mass) and hindlimb size (hindlimb length) to test for departures from isometry. Additionally, I applied two parameters of trait evolution (Pagel’s λ and δ) to understand patterns of diversification in hindlimb segment mass in neognaths. Results All segment masses are positively allometric with body mass. Segment masses are isometric with hindlimb length. When examining scale effects in the neognath subclade Land Birds, segment masses were again positively allometric with body mass; however, shank, pedal, and tarsometatarsal segment masses were also positively allometric with hindlimb length. Methods of branch length scaling to detect phylogenetic signal (i.e., Pagel’s λ) and increasing or decreasing rates of trait change over time (i.e., Pagel’s δ) suffer from wide confidence intervals, likely due to small sample size and deep divergence times. Conclusions The scaling of segment masses appears to be more strongly related to the scaling of limb bone mass as opposed to length, and the scaling of hindlimb mass distribution is more a function of scale effects in limb posture than proximo-distal differences in the scaling of limb segment mass. Though negative allometry of segment masses appears to be precluded by the need for mechanically sound limbs, the positive allometry of segment masses relative to body mass may underlie scale effects in stride frequency and length between smaller and larger neognaths. While variation in linear proportions of limbs appear to be governed by developmental mechanisms, variation in mass proportions does not appear to be constrained so. PMID:24876886

Fast discovery and visualization of conserved regions in DNA sequences using quasi-alignment

PubMed Central

2013-01-01

Background Next Generation Sequencing techniques are producing enormous amounts of biological sequence data and analysis becomes a major computational problem. Currently, most analysis, especially the identification of conserved regions, relies heavily on Multiple Sequence Alignment and its various heuristics such as progressive alignment, whose run time grows with the square of the number and the length of the aligned sequences and requires significant computational resources. In this work, we present a method to efficiently discover regions of high similarity across multiple sequences without performing expensive sequence alignment. The method is based on approximating edit distance between segments of sequences using p-mer frequency counts. Then, efficient high-throughput data stream clustering is used to group highly similar segments into so called quasi-alignments. Quasi-alignments have numerous applications such as identifying species and their taxonomic class from sequences, comparing sequences for similarities, and, as in this paper, discovering conserved regions across related sequences. Results In this paper, we show that quasi-alignments can be used to discover highly similar segments across multiple sequences from related or different genomes efficiently and accurately. Experiments on a large number of unaligned 16S rRNA sequences obtained from the Greengenes database show that the method is able to identify conserved regions which agree with known hypervariable regions in 16S rRNA. Furthermore, the experiments show that the proposed method scales well for large data sets with a run time that grows only linearly with the number and length of sequences, whereas for existing multiple sequence alignment heuristics the run time grows super-linearly. Conclusion Quasi-alignment-based algorithms can detect highly similar regions and conserved areas across multiple sequences. Since the run time is linear and the sequences are converted into a compact clustering model, we are able to identify conserved regions fast or even interactively using a standard PC. Our method has many potential applications such as finding characteristic signature sequences for families of organisms and studying conserved and variable regions in, for example, 16S rRNA. PMID:24564200

Fast discovery and visualization of conserved regions in DNA sequences using quasi-alignment.

PubMed

Nagar, Anurag; Hahsler, Michael

2013-01-01

Next Generation Sequencing techniques are producing enormous amounts of biological sequence data and analysis becomes a major computational problem. Currently, most analysis, especially the identification of conserved regions, relies heavily on Multiple Sequence Alignment and its various heuristics such as progressive alignment, whose run time grows with the square of the number and the length of the aligned sequences and requires significant computational resources. In this work, we present a method to efficiently discover regions of high similarity across multiple sequences without performing expensive sequence alignment. The method is based on approximating edit distance between segments of sequences using p-mer frequency counts. Then, efficient high-throughput data stream clustering is used to group highly similar segments into so called quasi-alignments. Quasi-alignments have numerous applications such as identifying species and their taxonomic class from sequences, comparing sequences for similarities, and, as in this paper, discovering conserved regions across related sequences. In this paper, we show that quasi-alignments can be used to discover highly similar segments across multiple sequences from related or different genomes efficiently and accurately. Experiments on a large number of unaligned 16S rRNA sequences obtained from the Greengenes database show that the method is able to identify conserved regions which agree with known hypervariable regions in 16S rRNA. Furthermore, the experiments show that the proposed method scales well for large data sets with a run time that grows only linearly with the number and length of sequences, whereas for existing multiple sequence alignment heuristics the run time grows super-linearly. Quasi-alignment-based algorithms can detect highly similar regions and conserved areas across multiple sequences. Since the run time is linear and the sequences are converted into a compact clustering model, we are able to identify conserved regions fast or even interactively using a standard PC. Our method has many potential applications such as finding characteristic signature sequences for families of organisms and studying conserved and variable regions in, for example, 16S rRNA.

Global patterns of domestic cannabis cultivation: sample characteristics and patterns of growing across eleven countries.

PubMed

Potter, Gary R; Barratt, Monica J; Malm, Aili; Bouchard, Martin; Blok, Thomas; Christensen, Anne-Sofie; Decorte, Tom; Frank, Vibeke Asmussen; Hakkarainen, Pekka; Klein, Axel; Lenton, Simon; Perälä, Jussi; Werse, Bernd; Wouters, Marije

2015-03-01

This article aims to provide an overview of: demographic characteristics; experiences with growing cannabis; methods and scale of growing operations; reasons for growing; personal use of cannabis and other drugs; participation in cannabis and other drug markets; contacts with the criminal justice system for respondents to an online survey about cannabis cultivation drawn from eleven countries (N=6530). Important similarities and differences between the national samples recruited will be discussed. This paper utilizes data from the online web survey of predominantly 'small-scale' cannabis cultivators in eleven countries conducted by the Global Cannabis Cultivation Research Consortium (GCCRC). Here we focus primarily on descriptive statistics to highlight key similarities and differences across the different national samples. Overall there was a great deal of similarity across countries in terms of: demographic characteristics; experiences with growing cannabis; methods and scale of growing operations; reasons for growing; use of cannabis and other drugs; participation in cannabis and other drug markets, and; contacts with the criminal justice system. In particular, we can recognise that a clear majority of those small-scale cannabis cultivators who responded to our survey are primarily motivated for reasons other than making money from cannabis supply and have minimal involvement in drug dealing or other criminal activities. These growers generally come from 'normal' rather than 'deviant' backgrounds. Some differences do exist between the samples drawn from different countries suggesting that local factors (political, geographical, cultural, etc.) may have some influence on how small-scale cultivators operate, although differences in recruitment strategies in different countries may also account for some differences observed. Copyright © 2014 Elsevier B.V. All rights reserved.

Neandertal clavicle length

PubMed Central

Trinkaus, Erik; Holliday, Trenton W.; Auerbach, Benjamin M.

2014-01-01

The Late Pleistocene archaic humans from western Eurasia (the Neandertals) have been described for a century as exhibiting absolutely and relatively long clavicles. This aspect of their body proportions has been used to distinguish them from modern humans, invoked to account for other aspects of their anatomy and genetics, used in assessments of their phylogenetic polarities, and used as evidence for Late Pleistocene population relationships. However, it has been unclear whether the usual scaling of Neandertal clavicular lengths to their associated humeral lengths reflects long clavicles, short humeri, or both. Neandertal clavicle lengths, along with those of early modern humans and latitudinally diverse recent humans, were compared with both humeral lengths and estimated body masses (based on femoral head diameters). The Neandertal do have long clavicles relative their humeri, even though they fall within the ranges of variation of early and recent humans. However, when scaled to body masses, their humeral lengths are relatively short, and their clavicular lengths are indistinguishable from those of Late Pleistocene and recent modern humans. The few sufficiently complete Early Pleistocene Homo clavicles seem to have relative lengths also well within recent human variation. Therefore, appropriately scaled clavicular length seems to have varied little through the genus Homo, and it should not be used to account for other aspects of Neandertal biology or their phylogenetic status. PMID:24616525

A parsec-scale optical jet from a massive young star in the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

McLeod, Anna F.; Reiter, Megan; Kuiper, Rolf; Klaassen, Pamela D.; Evans, Christopher J.

2018-02-01

Highly collimated parsec-scale jets, which are generally linked to the presence of an accretion disk, are commonly observed in low-mass young stellar objects. In the past two decades, a few of these jets have been directly (or indirectly) observed from higher-mass (larger than eight solar masses) young stellar objects, adding to the growing evidence that disk-mediated accretion also occurs in high-mass stars, the formation mechanism of which is still poorly understood. Of the observed jets from massive young stars, none is in the optical regime (massive young stars are typically highly obscured by their natal material), and none is found outside of the Milky Way. Here we report observations of HH 1177, an optical ionized jet that originates from a massive young stellar object located in the Large Magellanic Cloud. The jet is highly collimated over its entire measured length of at least ten parsecs and has a bipolar geometry. The presence of a jet indicates ongoing, disk-mediated accretion and, together with the high degree of collimation, implies that this system is probably formed through a scaled-up version of the formation mechanism of low-mass stars. We conclude that the physics that govern jet launching and collimation is independent of stellar mass.

A parsec-scale optical jet from a massive young star in the Large Magellanic Cloud.

PubMed

McLeod, Anna F; Reiter, Megan; Kuiper, Rolf; Klaassen, Pamela D; Evans, Christopher J

2018-02-15

Highly collimated parsec-scale jets, which are generally linked to the presence of an accretion disk, are commonly observed in low-mass young stellar objects. In the past two decades, a few of these jets have been directly (or indirectly) observed from higher-mass (larger than eight solar masses) young stellar objects, adding to the growing evidence that disk-mediated accretion also occurs in high-mass stars, the formation mechanism of which is still poorly understood. Of the observed jets from massive young stars, none is in the optical regime (massive young stars are typically highly obscured by their natal material), and none is found outside of the Milky Way. Here we report observations of HH 1177, an optical ionized jet that originates from a massive young stellar object located in the Large Magellanic Cloud. The jet is highly collimated over its entire measured length of at least ten parsecs and has a bipolar geometry. The presence of a jet indicates ongoing, disk-mediated accretion and, together with the high degree of collimation, implies that this system is probably formed through a scaled-up version of the formation mechanism of low-mass stars. We conclude that the physics that govern jet launching and collimation is independent of stellar mass.

Simplification of a light-based model for estimating final internode length in greenhouse cucumber canopies.

PubMed

Kahlen, Katrin; Stützel, Hartmut

2011-10-01

Light quantity and quality affect internode lengths in cucumber (Cucumis sativus), whereby leaf area and the optical properties of the leaves mainly control light quality within a cucumber plant community. This modelling study aimed at providing a simple, non-destructive method to predict final internode lengths (FILs) using light quantity and leaf area data. Several simplifications of a light quantity and quality sensitive model for estimating FILs in cucumber have been tested. The direct simplifications substitute the term for the red : far-red (R : FR) ratios, by a term for (a) the leaf area index (LAI, m(2) m(-2)) or (b) partial LAI, the cumulative leaf area per m(2) ground, where leaf area per m(2) ground is accumulated from the top of each plant until a number, n, of leaves per plant is reached. The indirect simplifications estimate the input R : FR ratio based on partial leaf area and plant density. In all models, simulated FILs were in line with the measured FILs over various canopy architectures and light conditions, but the prediction quality varied. The indirect simplification based on leaf area of ten leaves revealed the best fit with measured data. Its prediction quality was even higher than of the original model. This study showed that for vertically trained cucumber plants, leaf area data can substitute local light quality data for estimating FIL data. In unstressed canopies, leaf area over the upper ten ranks seems to represent the feedback of the growing architecture on internode elongation with respect to light quality. This highlights the role of this domain of leaves as the primary source for the specific R : FR signal controlling the final length of an internode and could therefore guide future research on up-scaling local processes to the crop level.

Index Compression and Efficient Query Processing in Large Web Search Engines

ERIC Educational Resources Information Center

Ding, Shuai

2013-01-01

The inverted index is the main data structure used by all the major search engines. Search engines build an inverted index on their collection to speed up query processing. As the size of the web grows, the length of the inverted list structures, which can easily grow to hundreds of MBs or even GBs for common terms (roughly linear in the size of…

Changes in kenaf properties and chemistry as a function of growing time

Treesearch

Roger M. Rowell; James S. Han

1999-01-01

Kenaf Tainung 1 cultivar was grown in Madison, WI in 1994. The ratio of core to bast fiber, total plant yield, protein, ash, fiber length, extractives, lignin, and sugar content were determined as a function of growing age. Ash, protein, extractives, L-arabinose, L-rhamnose, D-galactose, and D-mannose contents decreased while lignin, D-glucose and D-xylose content...

Spatial confinement of active microtubule networks induces large-scale rotational cytoplasmic flow

PubMed Central

Suzuki, Kazuya; Miyazaki, Makito; Takagi, Jun; Itabashi, Takeshi; Ishiwata, Shin’ichi

2017-01-01

Collective behaviors of motile units through hydrodynamic interactions induce directed fluid flow on a larger length scale than individual units. In cells, active cytoskeletal systems composed of polar filaments and molecular motors drive fluid flow, a process known as cytoplasmic streaming. The motor-driven elongation of microtubule bundles generates turbulent-like flow in purified systems; however, it remains unclear whether and how microtubule bundles induce large-scale directed flow like the cytoplasmic streaming observed in cells. Here, we adopted Xenopus egg extracts as a model system of the cytoplasm and found that microtubule bundle elongation induces directed flow for which the length scale and timescale depend on the existence of geometrical constraints. At the lower activity of dynein, kinesins bundle and slide microtubules, organizing extensile microtubule bundles. In bulk extracts, the extensile bundles connected with each other and formed a random network, and vortex flows with a length scale comparable to the bundle length continually emerged and persisted for 1 min at multiple places. When the extracts were encapsulated in droplets, the extensile bundles pushed the droplet boundary. This pushing force initiated symmetry breaking of the randomly oriented bundle network, leading to bundles aligning into a rotating vortex structure. This vortex induced rotational cytoplasmic flows on the length scale and timescale that were 10- to 100-fold longer than the vortex flows emerging in bulk extracts. Our results suggest that microtubule systems use not only hydrodynamic interactions but also mechanical interactions to induce large-scale temporally stable cytoplasmic flow. PMID:28265076

Polymer Physics Prize Talk

NASA Astrophysics Data System (ADS)

Olvera de La Cruz, Monica

Polymer electrolytes have been particularly difficult to describe theoretically given the large number of disparate length scales involved in determining their physical properties. The Debye length, the Bjerrum length, the ion size, the chain length, and the distance between the charges along their backbones determine their structure and their response to external fields. We have developed an approach that uses multi-scale calculations with the capability of demonstrating the phase behavior of polymer electrolytes and of providing a conceptual understanding of how charge dictates nano-scale structure formation. Moreover, our molecular dynamics simulations have provided an understanding of the coupling of their conformation to their dynamics, which is crucial to design self-assembling materials, as well as to explore the dynamics of complex electrolytes for energy storage and conversion applications.

A new species of the genus Capoeta Valenciennes, 1842 from the Caspian Sea basin in Iran (Teleostei, Cyprinidae)

PubMed Central

Jouladeh-Roudbar, Arash; Eagderi, Soheil; Ghanavi, Hamid Reza; Doadrio, Ignacio

2017-01-01

Abstract A new species of algae-scraping cyprinid of the genus Capoeta Valenciennes, 1842 is described from the Kheyroud River, located in the southern part of the Caspian Sea basin in Iran. The species differs from other members of this genus by a combination of the following characters: one pair of barbels; predorsal length equal to postdorsal length; maxillary barbel slightly smaller than eye’s horizontal diameter and reach to posterior margin of orbit; intranasal length slightly shorter than snout length; lateral line with 46–54 scales; 7–9 scales between dorsal-fin origin and lateral line, and 6–7 scales between anal-fin origin and lateral line. PMID:28769726

Motion of Molecular Probes and Viscosity Scaling in Polyelectrolyte Solutions at Physiological Ionic Strength

PubMed Central

Sozanski, Krzysztof; Wisniewska, Agnieszka; Kalwarczyk, Tomasz; Sznajder, Anna; Holyst, Robert

2016-01-01

We investigate transport properties of model polyelectrolyte systems at physiological ionic strength (0.154 M). Covering a broad range of flow length scales—from diffusion of molecular probes to macroscopic viscous flow—we establish a single, continuous function describing the scale dependent viscosity of high-salt polyelectrolyte solutions. The data are consistent with the model developed previously for electrically neutral polymers in a good solvent. The presented approach merges the power-law scaling concepts of de Gennes with the idea of exponential length scale dependence of effective viscosity in complex liquids. The result is a simple and applicable description of transport properties of high-salt polyelectrolyte solutions at all length scales, valid for motion of single molecules as well as macroscopic flow of the complex liquid. PMID:27536866

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mamontov, Eugene; Zolnierczuk, Piotr A.; Ohl, Michael E.

Using neutron spin-echo and backscattering spectroscopy, we have found that at low temperatures water molecules in an aqueous solution engage in center-of-mass dynamics that are different from both the main structural relaxations and the well-known localized motions in the transient cages of the nearest neighbor molecules. While the latter localized motions are known to take place on the picosecond time scale and Angstrom length scale, the slower motions that we have observed are found on the nanosecond time scale and nanometer length scale. They are associated with the slow secondary relaxations, or excess wing dynamics, in glass-forming liquids. Our approach,more » therefore, can be applied to probe the characteristic length scale of the dynamic entities associated with slow dynamics in glass-forming liquids, which presently cannot be studied by other experimental techniques.« less

Correlation lengths in hydrodynamic models of active nematics.

PubMed

Hemingway, Ewan J; Mishra, Prashant; Marchetti, M Cristina; Fielding, Suzanne M

2016-09-28

We examine the scaling with activity of the emergent length scales that control the nonequilibrium dynamics of an active nematic liquid crystal, using two popular hydrodynamic models that have been employed in previous studies. In both models we find that the chaotic spatio-temporal dynamics in the regime of fully developed active turbulence is controlled by a single active scale determined by the balance of active and elastic stresses, regardless of whether the active stress is extensile or contractile in nature. The observed scaling of the kinetic energy and enstrophy with activity is consistent with our single-length scale argument and simple dimensional analysis. Our results provide a unified understanding of apparent discrepancies in the previous literature and demonstrate that the essential physics is robust to the choice of model.

Harnessing Disorder in Compression Based Nanofabrication

NASA Astrophysics Data System (ADS)

Engel, Clifford John

The future of nanotechnologies depends on the successful development of versatile, low-cost techniques for patterning micro- and nanoarchitectures. While most approaches to nanofabrication have focused primarily on making periodic structures at ever smaller length scales with an ultimate goal of massively scaling their production, I have focused on introducing control into relatively disordered nanofabrication systems. Well-ordered patterns are increasingly unnecessary for a growing range of applications, from anti-biofouling coatings to light trapping to omniphobic surfaces. The ability to manipulate disorder, at will and over multiple length scales, starting with the nanoscale, can open new prospects for textured substrates and unconventional applications. Taking advantage of previously considered defects; I have been able to develop nanofabrication techniques with potential for massive scalability and the incorporation into a wide range of potential application. This thesis first describes the manipulation of the non-Newtonian properties of liquid Ga and Ga alloys to confine the metal and metal alloys in gratings with sub-wavelength periodicities. Through a solid to liquid phase change, I was able to access the superior plasmonic properties of liquid Ga for the generation of surface plasmon polaritons (SPP). The switching contract between solid and liquid Ga confine in the nanogratings allowed for reversible manipulation of SPP properties through heating and cooling around the relatively low melting temperature of Ga (29.8 °C). The remaining chapters focus on the development and characterization of an all polymer wrinkle material system. Wrinkles, spontaneous disordered features that are produced in response to compressive force, are an ideal for a growing number of applications where fine feature control is no longer the main motivation. However the mechanical limitations of many wrinkle systems have restricted the potential applications of wrinkled surfaces. We developed a wrinkle material system that could be both tuned in feature size from as small as 30 nm up 10 ?m while maximizing the wrinkle amplitude at all wavelengths. By charactering the material properties of both the skin and substrate, we were able to generate wrinkle patterns with fine control over periodicity, amplitude, and orientation. The final chapters of this thesis focuses on the transfer of the wrinkle structure into functional materials aimed at manipulating biological adhesion of cells, optical absorption of solar cells, and sensor sensitivity of Raman substrates. The success of these applications was directly relative to the capabilities of our wrinkle system in controlling the surface chemistry, tuning the periodicity, and maximizing the amplitude for each application.

The length of the glaciers in the world - a straightforward method for the automated calculation of glacier center lines

NASA Astrophysics Data System (ADS)

Machguth, H.; Huss, M.

2014-05-01

Glacier length is an important measure of glacier geometry but global glacier inventories are mostly lacking length data. Only recently semi-automated approaches to measure glacier length have been developed and applied regionally. Here we present a first global assessment of glacier length using a fully automated method based on glacier surface slope, distance to the glacier margins and a set of trade-off functions. The method is developed for East Greenland, evaluated for the same area as well as for Alaska, and eventually applied to all ∼200 000 glaciers around the globe. The evaluation highlights accurately calculated glacier length where DEM quality is good (East Greenland) and limited precision on low quality DEMs (parts of Alaska). Measured length of very small glaciers is subject to a certain level of ambiguity. The global calculation shows that only about 1.5% of all glaciers are longer than 10 km with Bering Glacier (Alaska/Canada) being the longest glacier in the world at a length of 196 km. Based on model output we derive global and regional area-length scaling laws. Differences among regional scaling parameters appear to be related to characteristics of topography and glacier mass balance. The present study adds glacier length as a central parameter to global glacier inventories. Global and regional scaling laws might proof beneficial in conceptual glacier models.

The length of the world's glaciers - a new approach for the global calculation of center lines

NASA Astrophysics Data System (ADS)

Machguth, H.; Huss, M.

2014-09-01

Glacier length is an important measure of glacier geometry. Nevertheless, global glacier inventories are mostly lacking length data. Only recently semi-automated approaches to measure glacier length have been developed and applied regionally. Here we present a first global assessment of glacier length using an automated method that relies on glacier surface slope, distance to the glacier margins and a set of trade-off functions. The method is developed for East Greenland, evaluated for East Greenland as well as for Alaska and eventually applied to all ~ 200 000 glaciers around the globe. The evaluation highlights accurately calculated glacier length where digital elevation model (DEM) quality is high (East Greenland) and limited accuracy on low-quality DEMs (parts of Alaska). Measured length of very small glaciers is subject to a certain level of ambiguity. The global calculation shows that only about 1.5% of all glaciers are longer than 10 km, with Bering Glacier (Alaska/Canada) being the longest glacier in the world at a length of 196 km. Based on the output of our algorithm we derive global and regional area-length scaling laws. Differences among regional scaling parameters appear to be related to characteristics of topography and glacier mass balance. The present study adds glacier length as a key parameter to global glacier inventories. Global and regional scaling laws might prove beneficial in conceptual glacier models.

Why small-scale cannabis growers stay small: five mechanisms that prevent small-scale growers from going large scale.

PubMed

Hammersvik, Eirik; Sandberg, Sveinung; Pedersen, Willy

2012-11-01

Over the past 15-20 years, domestic cultivation of cannabis has been established in a number of European countries. New techniques have made such cultivation easier; however, the bulk of growers remain small-scale. In this study, we explore the factors that prevent small-scale growers from increasing their production. The study is based on 1 year of ethnographic fieldwork and qualitative interviews conducted with 45 Norwegian cannabis growers, 10 of whom were growing on a large-scale and 35 on a small-scale. The study identifies five mechanisms that prevent small-scale indoor growers from going large-scale. First, large-scale operations involve a number of people, large sums of money, a high work-load and a high risk of detection, and thus demand a higher level of organizational skills than for small growing operations. Second, financial assets are needed to start a large 'grow-site'. Housing rent, electricity, equipment and nutrients are expensive. Third, to be able to sell large quantities of cannabis, growers need access to an illegal distribution network and knowledge of how to act according to black market norms and structures. Fourth, large-scale operations require advanced horticultural skills to maximize yield and quality, which demands greater skills and knowledge than does small-scale cultivation. Fifth, small-scale growers are often embedded in the 'cannabis culture', which emphasizes anti-commercialism, anti-violence and ecological and community values. Hence, starting up large-scale production will imply having to renegotiate or abandon these values. Going from small- to large-scale cannabis production is a demanding task-ideologically, technically, economically and personally. The many obstacles that small-scale growers face and the lack of interest and motivation for going large-scale suggest that the risk of a 'slippery slope' from small-scale to large-scale growing is limited. Possible political implications of the findings are discussed. Copyright © 2012 Elsevier B.V. All rights reserved.

Responses of stream nitrate and dissolved organic carbon loadings to hydrological forcing and climate change in an upland forest of the northeast USA

USGS Publications Warehouse

Sebestyen, Stephen D.; Boyer, Elizabeth W.; Shanley, James B.

2009-01-01

[1] In coming decades, higher annual temperatures, increased growing season length, and increased dormant season precipitation are expected across the northeastern United States in response to anthropogenic forcing of global climate. We synthesized long-term stream hydrochemical data from the Sleepers River Research Watershed in Vermont, United States, to explore the relationship of catchment wetness to stream nitrate and DOC loadings. We modeled changes in growing season length and precipitation patterns to simulate future climate scenarios and to assess how stream nutrient loadings respond to climate change. Model results for the 2070–2099 time period suggest that stream nutrient loadings during both the dormant and growing seasons will respond to climate change. During a warmer climate, growing season stream fluxes (runoff +20%, nitrate +57%, and DOC +58%) increase as more precipitation (+28%) and quick flow (+39%) occur during a longer growing season (+43 days). During the dormant season, stream water and nutrient loadings decrease. Net annual stream runoff (+8%) and DOC loading (+9%) increases are commensurate with the magnitude of the average increase of net annual precipitation (+7%). Net annual stream water and DOC loadings are primarily affected by increased dormant season precipitation. In contrast, decreased annual loading of stream nitrate (−2%) reflects a larger effect of growing season controls on stream nitrate and the effects of lengthened growing seasons in a warmer climate. Our findings suggest that leaching of nitrate and DOC from catchment soils will be affected by anthropogenic climate forcing, thereby affecting the timing and magnitude of annual stream loadings in the northeastern United States.

Responses of stream nitrate and DOC loadings to hydrological forcing and climate change in an upland forest of the northeastern United States

USGS Publications Warehouse

Sebestyen, S.D.; Boyer, E.W.; Shanley, J.B.

2009-01-01

In coming decades, higher annual temperatures, increased growing season length, and increased dormant season precipitation are expected across the northeastern United States in response to anthropogenic forcing of global climate. We synthesized long-term stream hydrochemical data from the Sleepers River Research Watershed in Vermont, United States, to explore the relationship of catchment wetness to stream nitrate and DOC loadings. We modeled changes in growing season length and precipitation patterns to simulate future climate scenarios and to assess how stream nutrient loadings respond to climate change. Model results for the 2070-2099 time period suggest that stream nutrient loadings during both the dormant and growing seasons will respond to climate change. During a warmer climate, growing season stream fluxes (runoff+20%, nitrate +57%, and DOC +58%) increase as more precipitation (+28%) and quick flow (+39%) occur during a longer growing season (+43 days). During the dormant season, stream water and nutrient loadings decrease. Net annual stream runoff (+8%) and DOC loading (+9%) increases are commensurate with the magnitude of the average increase of net annual precipitation (+7%). Net annual stream water and DOC loadings are primarily affected by increased dormant season precipitation. In contrast, decreased annual loading of stream nitrate (-2%) reflects a larger effect of growing season controls on stream nitrate and the effects of lengthened growing seasons in a warmer climate. Our findings suggest that leaching of nitrate and DOC from catchment soils will be affected by anthropogenic climate forcing, thereby affecting the timing and magnitude of annual stream loadings in the northeastern United States. Copyright 2009 by the American Geophysical Union.

On the properties of a bundle of flexible actin filaments in an optical trap.

PubMed

Perilli, Alessia; Pierleoni, Carlo; Ciccotti, Giovanni; Ryckaert, Jean-Paul

2016-06-28

We establish the statistical mechanics framework for a bundle of Nf living and uncrosslinked actin filaments in a supercritical solution of free monomers pressing against a mobile wall. The filaments are anchored normally to a fixed planar surface at one of their ends and, because of their limited flexibility, they grow almost parallel to each other. Their growing ends hit a moving obstacle, depicted as a second planar wall, parallel to the previous one and subjected to a harmonic compressive force. The force constant is denoted as the trap strength while the distance between the two walls as the trap length to make contact with the experimental optical trap apparatus. For an ideal solution of reactive filaments and free monomers at fixed free monomer chemical potential μ1, we obtain the general expression for the grand potential from which we derive averages and distributions of relevant physical quantities, namely, the obstacle position, the bundle polymerization force, and the number of filaments in direct contact with the wall. The grafted living filaments are modeled as discrete Wormlike chains, with F-actin persistence length ℓp, subject to discrete contour length variations ±d (the monomer size) to model single monomer (de)polymerization steps. Rigid filaments (ℓp = ∞), either isolated or in bundles, all provide average values of the stalling force in agreement with Hill's predictions Fs (H)=NfkBTln(ρ1/ρ1c)/d, independent of the average trap length. Here ρ1 is the density of free monomers in the solution and ρ1c its critical value at which the filament does not grow nor shrink in the absence of external forces. Flexible filaments (ℓp < ∞) instead, for values of the trap strength suitable to prevent their lateral escape, provide an average bundle force and an average trap length slightly larger than the corresponding rigid cases (few percents). Still the stalling force remains nearly independent on the average trap length, but results from the product of two strongly L-dependent contributions: the fraction of touching filaments ∝〈L〉(O.T.) (2) and the single filament buckling force ∝〈L〉(O.T.) (-2).

Topoclimate effects on growing season length and montane conifer growth in complex terrain

DOE PAGES

Barnard, David M.; Barnard, H. R.; Molotch, N. P.

2017-05-23

Spatial variability in the topoclimate-driven linkage between forest phenology and tree growth in complex terrain is poorly understood, limiting our understanding of how ecosystems function as a whole. To characterize the influence of topoclimate on phenology and growth, we determined the start, end, and length of the growing season (GS start, GS end, and GSL, respectively) using the correlation between transpiration and evaporative demand, measured with sapflow. We then compared these metrics with stem relative basal area increment (relative BAI) at seven sites among elevation and aspects in a Colorado montane forest. As elevation increased, we found shorter GSL (–50more » d km –1) due to later GSstart (40 d km –1) and earlier GSend (–10 d km –1). North-facing sites had a 21 d shorter GSL than south-facing sites at similar elevations (i.e. equal to 200 m elevation difference on a given aspect). Growing season length was positively correlated with relative BAI, explaining 83% of the variance. This study shows that topography exerts strong environmental controls on GSL and thus forest growth. Here, given the climate-related dependencies of these controls, the results presented here have important implications for ecosystem responses to changes in climate and highlight the need for improved phenology representation in complex terrain.« less

The growth of ultralong and highly blue luminescent gallium oxide nanowires and nanobelts, and direct horizontal nanowire growth on substrates.

PubMed

Kuo, Chi-Liang; Huang, Michael H

2008-04-16

We report the growth of ultralong β-Ga(2)O(3) nanowires and nanobelts on silicon substrates using a vapor phase transport method. The growth was carried out in a tube furnace, with gallium metal serving as the gallium source. The nanowires and nanobelts can grow to lengths of hundreds of nanometers and even millimeters. Their full lengths have been captured by both scanning electron microscope (SEM) and optical images. X-ray diffraction (XRD) patterns and transmission electron microscope (TEM) images have been used to study the crystal structures of these nanowires and nanobelts. Strong blue emission from these ultralong nanostructures can be readily observed by irradiation with an ultraviolet (UV) lamp. Diffuse reflectance spectroscopy measurements gave a band gap of 4.56 eV for these nanostructures. The blue emission shows a band maximum at 470 nm. Interestingly, by annealing the silicon substrates in an oxygen atmosphere to form a thick SiO(2) film, and growing Ga(2)O(3) nanowires over the sputtered gold patterned regions, horizontal Ga(2)O(3) nanowire growth in the non-gold-coated regions can be observed. These horizontal nanowires can grow to as long as over 10 µm in length. Their composition has been confirmed by TEM characterization. This represents one of the first examples of direct horizontal growth of oxide nanowires on substrates.

Topoclimate effects on growing season length and montane conifer growth in complex terrain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barnard, David M.; Barnard, H. R.; Molotch, N. P.

Spatial variability in the topoclimate-driven linkage between forest phenology and tree growth in complex terrain is poorly understood, limiting our understanding of how ecosystems function as a whole. To characterize the influence of topoclimate on phenology and growth, we determined the start, end, and length of the growing season (GS start, GS end, and GSL, respectively) using the correlation between transpiration and evaporative demand, measured with sapflow. We then compared these metrics with stem relative basal area increment (relative BAI) at seven sites among elevation and aspects in a Colorado montane forest. As elevation increased, we found shorter GSL (–50more » d km –1) due to later GSstart (40 d km –1) and earlier GSend (–10 d km –1). North-facing sites had a 21 d shorter GSL than south-facing sites at similar elevations (i.e. equal to 200 m elevation difference on a given aspect). Growing season length was positively correlated with relative BAI, explaining 83% of the variance. This study shows that topography exerts strong environmental controls on GSL and thus forest growth. Here, given the climate-related dependencies of these controls, the results presented here have important implications for ecosystem responses to changes in climate and highlight the need for improved phenology representation in complex terrain.« less

Multi-Scale Structure of Coacervates formed by Oppositely Charged Polyelectrolytes

NASA Astrophysics Data System (ADS)

Rubinstein, Michael

We develop a scaling model of coacervates formed by oppositely charged polyelectrolytes and demonstrate that they self-organize into multi-scale structures. The intramolecular electrostatic interactions in dilute polyanion or polycation solutions are characterized by the electrostatic blobs with size D- and D+ respectively, that repel neighboring blobs on the same chains with electrostatic energy on the order of thermal energy kT . After mixing, electrostatic intramolecular repulsion of polyelectrolytes with higher charged density, say polyanions, keeps these polyanions in coacervates aligned into stretched arrays of electrostatic blobs of size D-

Perspectives on integrated modeling of transport processes in semiconductor crystal growth

NASA Technical Reports Server (NTRS)

Brown, Robert A.

1992-01-01

The wide range of length and time scales involved in industrial scale solidification processes is demonstrated here by considering the Czochralski process for the growth of large diameter silicon crystals that become the substrate material for modern microelectronic devices. The scales range in time from microseconds to thousands of seconds and in space from microns to meters. The physics and chemistry needed to model processes on these different length scales are reviewed.

Vernier effect-based multiplication of the Sagnac beating frequency in ring laser gyroscope sensors

NASA Astrophysics Data System (ADS)

Adib, George A.; Sabry, Yasser M.; Khalil, Diaa

2018-02-01

A multiplication method of the Sagnac effect scale factor in ring laser gyroscopes is presented based on the Vernier effect of a dual-coupler passive ring resonator coupled to the active ring. The multiplication occurs when the two rings have comparable lengths or integer multiples and their scale factors have opposite signs. In this case, and when the rings have similar areas, the scale factor is multiplied by ratio of their length to their length difference. The scale factor of the presented configuration is derived analytically and the lock-in effect is analyzed. The principle is demonstrated using optical fiber rings and semiconductor optical amplifier as gain medium. A scale factor multiplication by about 175 is experimentally measured, demonstrating larger than two orders of magnitude enhancement in the Sagnac effect scale factor for the first time in literature, up to the authors' knowledge.

Persistence length of collagen molecules based on nonlocal viscoelastic model.

PubMed

Ghavanloo, Esmaeal

2017-12-01

Persistence length is one of the most interesting properties of a molecular chain, which is used to describe the stiffness of a molecule. The experimentally measured values of the persistence length of the collagen molecule are widely scattered from 14 to 180 nm. Therefore, an alternative approach is highly desirable to predict the persistence length of a molecule and also to explain the experimental results. In this paper, a nonlocal viscoelastic model is developed to obtain the persistence length of the collagen molecules in solvent. A new explicit formula is proposed for the persistence length of the molecule with the consideration of the small-scale effect, viscoelastic properties of the molecule, loading frequency, and viscosity of the solvent. The presented model indicates that there exists a range of molecule lengths in which the persistence length strongly depends on the frequency and spatial mode of applied loads, small-scale effect, and viscoelastic properties of the collagen.

Anomalous dispersion in correlated porous media: a coupled continuous time random walk approach

NASA Astrophysics Data System (ADS)

Comolli, Alessandro; Dentz, Marco

2017-09-01

We study the causes of anomalous dispersion in Darcy-scale porous media characterized by spatially heterogeneous hydraulic properties. Spatial variability in hydraulic conductivity leads to spatial variability in the flow properties through Darcy's law and thus impacts on solute and particle transport. We consider purely advective transport in heterogeneity scenarios characterized by broad distributions of heterogeneity length scales and point values. Particle transport is characterized in terms of the stochastic properties of equidistantly sampled Lagrangian velocities, which are determined by the flow and conductivity statistics. The persistence length scales of flow and transport velocities are imprinted in the spatial disorder and reflect the distribution of heterogeneity length scales. Particle transitions over the velocity length scales are kinematically coupled with the transition time through velocity. We show that the average particle motion follows a coupled continuous time random walk (CTRW), which is fully parameterized by the distribution of flow velocities and the medium geometry in terms of the heterogeneity length scales. The coupled CTRW provides a systematic framework for the investigation of the origins of anomalous dispersion in terms of heterogeneity correlation and the distribution of conductivity point values. We derive analytical expressions for the asymptotic scaling of the moments of the spatial particle distribution and first arrival time distribution (FATD), and perform numerical particle tracking simulations of the coupled CTRW to capture the full average transport behavior. Broad distributions of heterogeneity point values and lengths scales may lead to very similar dispersion behaviors in terms of the spatial variance. Their mechanisms, however are very different, which manifests in the distributions of particle positions and arrival times, which plays a central role for the prediction of the fate of dissolved substances in heterogeneous natural and engineered porous materials. Contribution to the Topical Issue "Continuous Time Random Walk Still Trendy: Fifty-year History, Current State and Outlook", edited by Ryszard Kutner and Jaume Masoliver.

Phase and vortex correlations in superconducting Josephson-junction arrays at irrational magnetic frustration.

PubMed

Granato, Enzo

2008-07-11

Phase coherence and vortex order in a Josephson-junction array at irrational frustration are studied by extensive Monte Carlo simulations using the parallel-tempering method. A scaling analysis of the correlation length of phase variables in the full equilibrated system shows that the critical temperature vanishes with a power-law divergent correlation length and critical exponent nuph, in agreement with recent results from resistivity scaling analysis. A similar scaling analysis for vortex variables reveals a different critical exponent nuv, suggesting that there are two distinct correlation lengths associated with a decoupled zero-temperature phase transition.

Thermal diffusivity study of aged Li-ion batteries using flash method

NASA Astrophysics Data System (ADS)

Nagpure, Shrikant C.; Dinwiddie, Ralph; Babu, S. S.; Rizzoni, Giorgio; Bhushan, Bharat; Frech, Tim

Advanced Li-ion batteries with high energy and power density are fast approaching compatibility with automotive demands. While the mechanism of operation of these batteries is well understood, the aging mechanisms are still under investigation. Investigation of aging mechanisms in Li-ion batteries becomes very challenging, as aging does not occur due to a single process, but because of multiple physical processes occurring at the same time in a cascading manner. As the current characterization techniques such as Raman spectroscopy, X-ray diffraction, and atomic force microscopy are used independent of each other they do not provide a comprehensive understanding of material degradation at different length (nm 2 to m 2) scales. Thus to relate the damage mechanisms of the cathode at mm length scale to micro/nanoscale, data at an intermediate length scale is needed. As such, we demonstrate here the use of thermal diffusivity analysis by flash method to bridge the gap between different length scales. In this paper we present the thermal diffusivity analysis of an unaged and aged cell. Thermal diffusivity analysis maps the damage to the cathode samples at millimeter scale lengths. Based on these maps we also propose a mechanism leading to the increase of the thermal diffusivity as the cells are aged.

[Treatment of juvenile scoliosis: Increasing the lengthening interval with the growing rod technique should not necessarily compromise thoracic growth].

PubMed

Pizones, J; Rodríguez-López, T; Zúñiga, L; Sánchez-Mariscal, F; Álvarez-González, P; Izquierdo, E

2014-01-01

Serial lengthening with growing rods is recommended every six months for the treatment of early onset scoliosis. The objective of this study was to evaluate the longitudinal growth of the thorax and control of the deformity in a series of patients with juvenile scoliosis when time intervals were increased between lengthenings. Retrospective study of eight patients. The following variables were measured: the Cobb angle, the apical vertebral translation, the coronal balance, thoracic T1-L1 length, thoracic T5-T12 kyphosis, the proximal junctional kyphosis (PJK) angle, and the lumbar lordosis. Complications were recorded. Five idiopathic and three syndromic scoliosis cases (mean age 9.4 ± 1.5 years) were evaluated. The initial surgery was followed by with an average of two distractions per patient. The mean time between distractions was 15.7 months. The final coronal main curve correction was 58%. Apical translation and coronal balance were improved and maintained after the surgeries. The thoracic (T1-L1) preoperative length was 20.8 cm, the postoperative length was 24.4 cm, and the final length was 26 cm. At the end of follow-up, the average growth of the thorax was 5.2 cm. The preoperative (T5-T12) kyphosis was 33.5°, and final 32.1°. The change in the PJK angle was 2.5° at the end of follow-up. Most complications were related to instrumentation. Two superficial wound infections were encountered. For less severe juvenile scoliosis patients treated with growing rods, spacing out lengthenings over more than a year can decrease the number of surgeries, while still controlling the deformity and allowing longitudinal thoracic growth. Copyright © 2014 SECOT. Published by Elsevier Espana. All rights reserved.

Lead Scales for X-Radiographs

NASA Technical Reports Server (NTRS)

Burley, Richard K.; Adams, James F.

1987-01-01

Indentations made by typing on lead tape. Lead scales for inclusion in x-radiographs as length and position references created by repeatedly imprinting character like upper-case I, L, or V, or lower-case L into lead tape with typewriter. Character pitch of typewriter serves as length reference for scale. Thinning of tape caused by impacts of type shows up dark in radiograph.

Length and area equivalents for interpreting wildland resource maps

Treesearch

Elliot L. Amidon; Marilyn S. Whitfield

1969-01-01

Map users must refer to an appropriate scale in interpreting wildland resource maps. Length and area equivalents for nine map scales commonly used have been computed. For each scale a 1-page table consists of map-to-ground equivalents, buffer strip or road widths, and cell dimensions required for a specified acreage. The conversion factors are stored in a Fortran...

Fall risk assessment: retrospective analysis of Morse Fall Scale scores in Portuguese hospitalized adult patients.

PubMed

Sardo, Pedro Miguel Garcez; Simões, Cláudia Sofia Oliveira; Alvarelhão, José Joaquim Marques; Simões, João Filipe Fernandes Lindo; Melo, Elsa Maria de Oliveira Pinheiro de

2016-08-01

The Morse Fall Scale is used in several care settings for fall risk assessment and supports the implementation of preventive nursing interventions. Our work aims to analyze the Morse Fall Scale scores of Portuguese hospitalized adult patients in association with their characteristics, diagnoses and length of stay. Retrospective cohort analysis of Morse Fall Scale scores of 8356 patients hospitalized during 2012. Data were associated to age, gender, type of admission, specialty units, length of stay, patient discharge, and ICD-9 diagnosis. Elderly patients, female, with emergency service admission, at medical units and/or with longer length of stays were more frequently included in the risk group for falls. ICD-9 diagnosis may also be an important risk factor. More than a half of hospitalized patients had "medium" to "high" risk of falling during the length of stay, which determines the implementation and maintenance of protocoled preventive nursing interventions throughout hospitalization. There are several fall risk factors not assessed by Morse Fall Scale. There were no statistical differences in Morse Fall Scale score between the first and the last assessment. Copyright © 2015 Elsevier Inc. All rights reserved.

Effect of artificial length scales in large eddy simulation of a neutral atmospheric boundary layer flow: A simple solution to log-layer mismatch

NASA Astrophysics Data System (ADS)

Chatterjee, Tanmoy; Peet, Yulia T.

2017-07-01

A large eddy simulation (LES) methodology coupled with near-wall modeling has been implemented in the current study for high Re neutral atmospheric boundary layer flows using an exponentially accurate spectral element method in an open-source research code Nek 5000. The effect of artificial length scales due to subgrid scale (SGS) and near wall modeling (NWM) on the scaling laws and structure of the inner and outer layer eddies is studied using varying SGS and NWM parameters in the spectral element framework. The study provides an understanding of the various length scales and dynamics of the eddies affected by the LES model and also the fundamental physics behind the inner and outer layer eddies which are responsible for the correct behavior of the mean statistics in accordance with the definition of equilibrium layers by Townsend. An economical and accurate LES model based on capturing the near wall coherent eddies has been designed, which is successful in eliminating the artificial length scale effects like the log-layer mismatch or the secondary peak generation in the streamwise variance.

Molecular simulations of lipid systems: Edge stability and structure in pure and mixed bilayers

NASA Astrophysics Data System (ADS)

Jiang, Yong

2007-12-01

Understanding the structural, mechanical and dynamical properties of lipid self-assembled systems is fundamental to understand the behavior of the cell membrane. This thesis has investigated the equilibrium properties of lipid systems with edge defects through various molecular simulation techniques. The overall goal of this study is to understand the free energy terms of the edges and to develop efficient methods to sample equilibrium distributions of mixed-lipid systems. In the first main part of my thesis, an atomistic molecular model is used to study lipid ribbon which has two edges on both sides. Details of the edge structures, such as area per lipid and tail torsional statistics are presented. Line tension, calculated from pressure tensor in MD simulation has good agreement with result from other sources. To further investigate edge properties on a longer timescale and larger length scale, we have applied a coarse-grained forcefield on mixed lipid systems and try to interpret the edge fluctuations in terms of free energy parameters such as line tension and bending modulus. We have identified two regimes with quite different edge behavior: a high line tension regime and a low line tension regime. The last part of this thesis focuses on a hybrid Molecular dynamics and Configurational-bias Monte Carlo (MCMD) simulation method in which molecules can change their type by growing and shrinking the terminal acyl united carbon atoms. A two-step extension of the MCMD method has been developed to allow for a larger difference in the components' tail lengths. Results agreed well with previous one-step mutation results for a mixture with a length difference of four carbons. The current method can efficiently sample mixtures with a length difference of eight carbons, with a small portion of lipids of intermediate tail length. Preliminary results are obtained for "bicelle"-type (DMPC/DHPC) ribbons.

Longer guts and higher food quality increase energy intake in migratory swans.

PubMed

van Gils, Jan A; Beekman, Jan H; Coehoorn, Pieter; Corporaal, Els; Dekkers, Ten; Klaassen, Marcel; van Kraaij, Rik; de Leeuw, Rinze; de Vries, Peter P

2008-11-01

1. Within the broad field of optimal foraging, it is increasingly acknowledged that animals often face digestive constraints rather than constraints on rates of food collection. This therefore calls for a formalization of how animals could optimize food absorption rates. 2. Here we generate predictions from a simple graphical optimal digestion model for foragers that aim to maximize their (true) metabolizable food intake over total time (i.e. including nonforaging bouts) under a digestive constraint. 3. The model predicts that such foragers should maintain a constant food retention time, even if gut length or food quality changes. For phenotypically flexible foragers, which are able to change the size of their digestive machinery, this means that an increase in gut length should go hand in hand with an increase in gross intake rate. It also means that better quality food should be digested more efficiently. 4. These latter two predictions are tested in a large avian long-distance migrant, the Bewick's swan (Cygnus columbianus bewickii), feeding on grasslands in its Dutch wintering quarters. 5. Throughout winter, free-ranging Bewick's swans, growing a longer gut and experiencing improved food quality, increased their gross intake rate (i.e. bite rate) and showed a higher digestive efficiency. These responses were in accordance with the model and suggest maintenance of a constant food retention time. 6. These changes doubled the birds' absorption rate. Had only food quality changed (and not gut length), then absorption rate would have increased by only 67%; absorption rate would have increased by only 17% had only gut length changed (and not food quality). 7. The prediction that gross intake rate should go up with gut length parallels the mechanism included in some proximate models of foraging that feeding motivation scales inversely to gut fullness. We plea for a tighter integration between ultimate and proximate foraging models.

Segmented metallic nanostructures, homogeneous metallic nanostructures and methods for producing same

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wong, Stanislaus; Koenigsmann, Christopher

The present invention includes a method of producing a segmented 1D nanostructure. The method includes providing a vessel containing a template wherein on one side of the template is a first metal reagent solution and on the other side of the template is a reducing agent solution, wherein the template comprises at least one pore; allowing a first segment of a 1D nanostructure to grow within a pore of the template until a desired length is reached; replacing the first metal reagent solution with a second metal reagent solution; allowing a second segment of a 1D nanostructure to grow frommore » the first segment until a desired length is reached, wherein a segmented 1D nanostructure is produced.« less

Progress in long scale length laser plasma interactions

NASA Astrophysics Data System (ADS)

Glenzer, S. H.; Arnold, P.; Bardsley, G.; Berger, R. L.; Bonanno, G.; Borger, T.; Bower, D. E.; Bowers, M.; Bryant, R.; Buckman, S.; Burkhart, S. C.; Campbell, K.; Chrisp, M. P.; Cohen, B. I.; Constantin, C.; Cooper, F.; Cox, J.; Dewald, E.; Divol, L.; Dixit, S.; Duncan, J.; Eder, D.; Edwards, J.; Erbert, G.; Felker, B.; Fornes, J.; Frieders, G.; Froula, D. H.; Gardner, S. D.; Gates, C.; Gonzalez, M.; Grace, S.; Gregori, G.; Greenwood, A.; Griffith, R.; Hall, T.; Hammel, B. A.; Haynam, C.; Heestand, G.; Henesian, M.; Hermes, G.; Hinkel, D.; Holder, J.; Holdner, F.; Holtmeier, G.; Hsing, W.; Huber, S.; James, T.; Johnson, S.; Jones, O. S.; Kalantar, D.; Kamperschroer, J. H.; Kauffman, R.; Kelleher, T.; Knight, J.; Kirkwood, R. K.; Kruer, W. L.; Labiak, W.; Landen, O. L.; Langdon, A. B.; Langer, S.; Latray, D.; Lee, A.; Lee, F. D.; Lund, D.; MacGowan, B.; Marshall, S.; McBride, J.; McCarville, T.; McGrew, L.; Mackinnon, A. J.; Mahavandi, S.; Manes, K.; Marshall, C.; Menapace, J.; Mertens, E.; Meezan, N.; Miller, G.; Montelongo, S.; Moody, J. D.; Moses, E.; Munro, D.; Murray, J.; Neumann, J.; Newton, M.; Ng, E.; Niemann, C.; Nikitin, A.; Opsahl, P.; Padilla, E.; Parham, T.; Parrish, G.; Petty, C.; Polk, M.; Powell, C.; Reinbachs, I.; Rekow, V.; Rinnert, R.; Riordan, B.; Rhodes, M.; Roberts, V.; Robey, H.; Ross, G.; Sailors, S.; Saunders, R.; Schmitt, M.; Schneider, M. B.; Shiromizu, S.; Spaeth, M.; Stephens, A.; Still, B.; Suter, L. J.; Tietbohl, G.; Tobin, M.; Tuck, J.; Van Wonterghem, B. M.; Vidal, R.; Voloshin, D.; Wallace, R.; Wegner, P.; Whitman, P.; Williams, E. A.; Williams, K.; Winward, K.; Work, K.; Young, B.; Young, P. E.; Zapata, P.; Bahr, R. E.; Seka, W.; Fernandez, J.; Montgomery, D.; Rose, H.

2004-12-01

The first experiments on the National Ignition Facility (NIF) have employed the first four beams to measure propagation and laser backscattering losses in large ignition-size plasmas. Gas-filled targets between 2 and 7 mm length have been heated from one side by overlapping the focal spots of the four beams from one quad operated at 351 nm (3ω) with a total intensity of 2 × 1015 W cm-2. The targets were filled with 1 atm of CO2 producing up to 7 mm long homogeneously heated plasmas with densities of ne = 6 × 1020 cm-3 and temperatures of Te = 2 keV. The high energy in an NIF quad of beams of 16 kJ, illuminating the target from one direction, creates unique conditions for the study of laser-plasma interactions at scale lengths not previously accessible. The propagation through the large-scale plasma was measured with a gated x-ray imager that was filtered for 3.5 keV x-rays. These data indicate that the beams interact with the full length of this ignition-scale plasma during the last ~1 ns of the experiment. During that time, the full aperture measurements of the stimulated Brillouin scattering and stimulated Raman scattering show scattering into the four focusing lenses of 3% for the smallest length (~2 mm), increasing to 10-12% for ~7 mm. These results demonstrate the NIF experimental capabilities and further provide a benchmark for three-dimensional modelling of the laser-plasma interactions at ignition-size scale lengths.

Fundamental Scaling Laws in Nanophotonics

PubMed Central

Liu, Ke; Sun, Shuai; Majumdar, Arka; Sorger, Volker J.

2016-01-01

The success of information technology has clearly demonstrated that miniaturization often leads to unprecedented performance, and unanticipated applications. This hypothesis of “smaller-is-better” has motivated optical engineers to build various nanophotonic devices, although an understanding leading to fundamental scaling behavior for this new class of devices is missing. Here we analyze scaling laws for optoelectronic devices operating at micro and nanometer length-scale. We show that optoelectronic device performance scales non-monotonically with device length due to the various device tradeoffs, and analyze how both optical and electrical constrains influence device power consumption and operating speed. Specifically, we investigate the direct influence of scaling on the performance of four classes of photonic devices, namely laser sources, electro-optic modulators, photodetectors, and all-optical switches based on three types of optical resonators; microring, Fabry-Perot cavity, and plasmonic metal nanoparticle. Results show that while microrings and Fabry-Perot cavities can outperform plasmonic cavities at larger length-scales, they stop working when the device length drops below 100 nanometers, due to insufficient functionality such as feedback (laser), index-modulation (modulator), absorption (detector) or field density (optical switch). Our results provide a detailed understanding of the limits of nanophotonics, towards establishing an opto-electronics roadmap, akin to the International Technology Roadmap for Semiconductors. PMID:27869159

Fundamental Scaling Laws in Nanophotonics.

PubMed

Liu, Ke; Sun, Shuai; Majumdar, Arka; Sorger, Volker J

2016-11-21

The success of information technology has clearly demonstrated that miniaturization often leads to unprecedented performance, and unanticipated applications. This hypothesis of "smaller-is-better" has motivated optical engineers to build various nanophotonic devices, although an understanding leading to fundamental scaling behavior for this new class of devices is missing. Here we analyze scaling laws for optoelectronic devices operating at micro and nanometer length-scale. We show that optoelectronic device performance scales non-monotonically with device length due to the various device tradeoffs, and analyze how both optical and electrical constrains influence device power consumption and operating speed. Specifically, we investigate the direct influence of scaling on the performance of four classes of photonic devices, namely laser sources, electro-optic modulators, photodetectors, and all-optical switches based on three types of optical resonators; microring, Fabry-Perot cavity, and plasmonic metal nanoparticle. Results show that while microrings and Fabry-Perot cavities can outperform plasmonic cavities at larger length-scales, they stop working when the device length drops below 100 nanometers, due to insufficient functionality such as feedback (laser), index-modulation (modulator), absorption (detector) or field density (optical switch). Our results provide a detailed understanding of the limits of nanophotonics, towards establishing an opto-electronics roadmap, akin to the International Technology Roadmap for Semiconductors.

Fundamental Scaling Laws in Nanophotonics

NASA Astrophysics Data System (ADS)

Liu, Ke; Sun, Shuai; Majumdar, Arka; Sorger, Volker J.

2016-11-01

The success of information technology has clearly demonstrated that miniaturization often leads to unprecedented performance, and unanticipated applications. This hypothesis of “smaller-is-better” has motivated optical engineers to build various nanophotonic devices, although an understanding leading to fundamental scaling behavior for this new class of devices is missing. Here we analyze scaling laws for optoelectronic devices operating at micro and nanometer length-scale. We show that optoelectronic device performance scales non-monotonically with device length due to the various device tradeoffs, and analyze how both optical and electrical constrains influence device power consumption and operating speed. Specifically, we investigate the direct influence of scaling on the performance of four classes of photonic devices, namely laser sources, electro-optic modulators, photodetectors, and all-optical switches based on three types of optical resonators; microring, Fabry-Perot cavity, and plasmonic metal nanoparticle. Results show that while microrings and Fabry-Perot cavities can outperform plasmonic cavities at larger length-scales, they stop working when the device length drops below 100 nanometers, due to insufficient functionality such as feedback (laser), index-modulation (modulator), absorption (detector) or field density (optical switch). Our results provide a detailed understanding of the limits of nanophotonics, towards establishing an opto-electronics roadmap, akin to the International Technology Roadmap for Semiconductors.

A modification in the technique of computing average lengths from the scales of fishes

USGS Publications Warehouse

Van Oosten, John

1953-01-01

In virtually all the studies that employ scales, otollths, or bony structures to obtain the growth history of fishes, it has been the custom to compute lengths for each individual fish and from these data obtain the average growth rates for any particular group. This method involves a considerable amount of mathematical manipulation, time, and effort. Theoretically it should be possible to obtain the same information simply by averaging the scale measurements for each year of life and the length of the fish employed and computing the average lengths from these data. This method would eliminate all calculations for individual fish. Although Van Oosten (1929: 338) pointed out many years ago the validity of this method of computation, his statements apparently have been overlooked by subsequent investigators.

Verification of satellite radar remote sensing based estimates of boreal and subalpine growing seasons using an ecosystem process model and surface biophysical measurement network information

NASA Technical Reports Server (NTRS)

McDonald, K. C.; Kimball, J. S.; Zimmerman, R.

2002-01-01

We employ daily surface Radar backscatter data from the SeaWinds Ku-band Scatterometer onboard Quikscat to estimate landscape freeze-thaw state and associated length of the seasonal non-frozen period as a surrogate for determining the annual growing season across boreal and subalpine regions of North America for 2000 and 2001.

A nomograph for the computation of the growth of fish from scale measurements

USGS Publications Warehouse

Hile, Ralph

1950-01-01

Directions are given for the construction and operation of a nomograph that can be employed for the computation of the growth of fish from scale measurements regardless of the nature of the body-scale relationship, so long as that relationship is known. The essential feature of the nomograph that makes rapid calculations possible is a ruler on which the graduations are in terms of length with the distance of each length graduation from the O graduation equal to the corresponding theoretical scale measurement. The chief advantage of the nomograph lies in the fact that the calculation of the lengths for all years of life of an individual fish requires only one setting of the single movable part.

Probing sub-alveolar length scales with hyperpolarized-gas diffusion NMR

NASA Astrophysics Data System (ADS)

Miller, Wilson; Carl, Michael; Mooney, Karen; Mugler, John; Cates, Gordon

2009-05-01

Diffusion MRI of the lung is a promising technique for detecting alterations of normal lung microstructure in diseases such as emphysema. The length scale being probed using this technique is related to the time scale over which the helium-3 or xenon-129 diffusion is observed. We have developed new MR pulse sequence methods for making diffusivity measurements at sub-millisecond diffusion times, allowing one to probe smaller length scales than previously possible in-vivo, and opening the possibility of making quantitative measurements of the ratio of surface area to volume (S/V) in the lung airspaces. The quantitative accuracy of simulated and experimental measurements in microstructure phantoms will be discussed, and preliminary in-vivo results will be presented.

Feasibility analysis of large length-scale thermocapillary flow experiment for the International Space Station

NASA Astrophysics Data System (ADS)

Alberts, Samantha J.

The investigation of microgravity fluid dynamics emerged out of necessity with the advent of space exploration. In particular, capillary research took a leap forward in the 1960s with regards to liquid settling and interfacial dynamics. Due to inherent temperature variations in large spacecraft liquid systems, such as fuel tanks, forces develop on gas-liquid interfaces which induce thermocapillary flows. To date, thermocapillary flows have been studied in small, idealized research geometries usually under terrestrial conditions. The 1 to 3m lengths in current and future large tanks and hardware are designed based on hardware rather than research, which leaves spaceflight systems designers without the technological tools to effectively create safe and efficient designs. This thesis focused on the design and feasibility of a large length-scale thermocapillary flow experiment, which utilizes temperature variations to drive a flow. The design of a helical channel geometry ranging from 1 to 2.5m in length permits a large length-scale thermocapillary flow experiment to fit in a seemingly small International Space Station (ISS) facility such as the Fluids Integrated Rack (FIR). An initial investigation determined the proposed experiment produced measurable data while adhering to the FIR facility limitations. The computational portion of this thesis focused on the investigation of functional geometries of fuel tanks and depots using Surface Evolver. This work outlines the design of a large length-scale thermocapillary flow experiment for the ISS FIR. The results from this work improve the understanding thermocapillary flows and thus improve technological tools for predicting heat and mass transfer in large length-scale thermocapillary flows. Without the tools to understand the thermocapillary flows in these systems, engineers are forced to design larger, heavier vehicles to assure safety and mission success.

Turbulent kinetic energy and a possible hierarchy of length scales in a generalization of the Navier-Stokes alpha theory.

PubMed

Fried, Eliot; Gurtin, Morton E

2007-05-01

We present a continuum-mechanical formulation and generalization of the Navier-Stokes alpha theory based on a general framework for fluid-dynamical theories with gradient dependencies. Our flow equation involves two additional problem-dependent length scales alpha and beta. The first of these scales enters the theory through the internal kinetic energy, per unit mass, alpha2|D|2, where D is the symmetric part of the gradient of the filtered velocity. The remaining scale is associated with a dissipative hyperstress which depends linearly on the gradient of the filtered vorticity. When alpha and beta are equal, our flow equation reduces to the Navier-Stokes alpha equation. In contrast to the original derivation of the Navier-Stokes alpha equation, which relies on Lagrangian averaging, our formulation delivers boundary conditions. For a confined flow, our boundary conditions involve an additional length scale l characteristic of the eddies found near walls. Based on a comparison with direct numerical simulations for fully developed turbulent flow in a rectangular channel of height 2h, we find that alphabeta approximately Re(0.470) and lh approximately Re(-0.772), where Re is the Reynolds number. The first result, which arises as a consequence of identifying the internal kinetic energy with the turbulent kinetic energy, indicates that the choice alpha=beta required to reduce our flow equation to the Navier-Stokes alpha equation is likely to be problematic. The second result evinces the classical scaling relation eta/L approximately Re(-3/4) for the ratio of the Kolmogorov microscale eta to the integral length scale L . The numerical data also suggests that l < or = beta . We are therefore led to conjecture a tentative hierarchy, l < or = beta < alpha , involving the three length scales entering our theory.

Generating and controlling homogeneous air turbulence using random jet arrays

NASA Astrophysics Data System (ADS)

Carter, Douglas; Petersen, Alec; Amili, Omid; Coletti, Filippo

2016-12-01

The use of random jet arrays, already employed in water tank facilities to generate zero-mean-flow homogeneous turbulence, is extended to air as a working fluid. A novel facility is introduced that uses two facing arrays of individually controlled jets (256 in total) to force steady homogeneous turbulence with negligible mean flow, shear, and strain. Quasi-synthetic jet pumps are created by expanding pressurized air through small straight nozzles and are actuated by fast-response low-voltage solenoid valves. Velocity fields, two-point correlations, energy spectra, and second-order structure functions are obtained from 2D PIV and are used to characterize the turbulence from the integral-to-the Kolmogorov scales. Several metrics are defined to quantify how well zero-mean-flow homogeneous turbulence is approximated for a wide range of forcing and geometric parameters. With increasing jet firing time duration, both the velocity fluctuations and the integral length scales are augmented and therefore the Reynolds number is increased. We reach a Taylor-microscale Reynolds number of 470, a large-scale Reynolds number of 74,000, and an integral-to-Kolmogorov length scale ratio of 680. The volume of the present homogeneous turbulence, the largest reported to date in a zero-mean-flow facility, is much larger than the integral length scale, allowing for the natural development of the energy cascade. The turbulence is found to be anisotropic irrespective of the distance between the jet arrays. Fine grids placed in front of the jets are effective at modulating the turbulence, reducing both velocity fluctuations and integral scales. Varying the jet-to-jet spacing within each array has no effect on the integral length scale, suggesting that this is dictated by the length scale of the jets.

Engineering behavior of small-scale foundation piers constructed from alternative materials

NASA Astrophysics Data System (ADS)

Prokudin, Maxim Mikhaylovich

Testing small-scale prototype pier foundations to evaluate engineering behavior is an alternative to full-scale testing that facilitates testing of several piers and pier groups at relatively low cost. In this study, various pier systems and pier groups at one tenth scale were subjected to static vertical loading under controlled conditions to evaluate stiffness, bearing capacity, and group efficiency. Pier length, material properties and methods of installation were evaluated. Pier length to diameter ratios varied between four and eight. A unique soil pit with dimensions of 2.1 m in width, 1.5 m in length and 2.0 m in depth was designed to carry out this research. The test pit was filled with moisture conditioned and compacted Western Iowa loess. A special load test frame was designed and fabricated to provide up to 25,000 kg vertical reaction force for load testing. A load cell and displacement instrumentation was setup to capture the load test data. Alternative materials to conventional cement concrete were studied. The pier materials evaluated in this study included compacted aggregate, cement stabilized silt, cementitious grouts, and fiber reinforced silt. Key findings from this study demonstrated that (1) the construction method influences the behavior of aggregate piers, (2) the composition of the pier has a significant impact on the stiffness, (3) group efficiencies were found to be a function of pier length and pier material, (4) in comparison to full-scale testing the scaled piers were found to produce a stiffer response with load-settlement and bearing capacities to be similar. Further, although full-scale test results were not available for all pier materials, the small-scale testing provided a means for comparing results between pier systems. Finally, duplicate pier tests for a given length and material were found to be repeatable.

Asymptotic Expansion Homogenization for Multiscale Nuclear Fuel Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hales, J. D.; Tonks, M. R.; Chockalingam, K.

2015-03-01

Engineering scale nuclear fuel performance simulations can benefit by utilizing high-fidelity models running at a lower length scale. Lower length-scale models provide a detailed view of the material behavior that is used to determine the average material response at the macroscale. These lower length-scale calculations may provide insight into material behavior where experimental data is sparse or nonexistent. This multiscale approach is especially useful in the nuclear field, since irradiation experiments are difficult and expensive to conduct. The lower length-scale models complement the experiments by influencing the types of experiments required and by reducing the total number of experiments needed.more » This multiscale modeling approach is a central motivation in the development of the BISON-MARMOT fuel performance codes at Idaho National Laboratory. These codes seek to provide more accurate and predictive solutions for nuclear fuel behavior. One critical aspect of multiscale modeling is the ability to extract the relevant information from the lower length-scale sim- ulations. One approach, the asymptotic expansion homogenization (AEH) technique, has proven to be an effective method for determining homogenized material parameters. The AEH technique prescribes a system of equations to solve at the microscale that are used to compute homogenized material constants for use at the engineering scale. In this work, we employ AEH to explore the effect of evolving microstructural thermal conductivity and elastic constants on nuclear fuel performance. We show that the AEH approach fits cleanly into the BISON and MARMOT codes and provides a natural, multidimensional homogenization capability.« less

Computed tomography-based diagnosis of diffuse compensatory enlargement of coronary arteries using scaling power laws.

PubMed

Huo, Yunlong; Choy, Jenny Susana; Wischgoll, Thomas; Luo, Tong; Teague, Shawn D; Bhatt, Deepak L; Kassab, Ghassan S

2013-04-06

Glagov's positive remodelling in the early stages of coronary atherosclerosis often results in plaque rupture and acute events. Because positive remodelling is generally diffused along the epicardial coronary arterial tree, it is difficult to diagnose non-invasively. Hence, the objective of the study is to assess the use of scaling power law for the diagnosis of positive remodelling of coronary arteries based on computed tomography (CT) images. Epicardial coronary arterial trees were reconstructed from CT scans of six Ossabaw pigs fed on a high-fat, high-cholesterol, atherogenic diet for eight months as well as the same number of body-weight-matched farm pigs fed on a lean chow (101.9±16.1 versus 91.5±13.1 kg). The high-fat diet Ossabaw pig model showed diffuse positive remodelling of epicardial coronary arteries. Good fit of measured coronary data to the length-volume scaling power law ( where L(c) and V(c) are crown length and volume) were found for both the high-fat and control groups (R(2) = 0.95±0.04 and 0.99±0.01, respectively). The coefficient, K(LV), decreased significantly in the high-fat diet group when compared with the control (14.6±2.6 versus 40.9±5.6). The flow-length scaling power law, however, was nearly unaffected by the positive remodelling. The length-volume and flow-length scaling power laws were preserved in epicardial coronary arterial trees after positive remodelling. K(LV) < 18 in the length-volume scaling relation is a good index of positive remodelling of coronary arteries. These findings provide a clinical rationale for simple, accurate and non-invasive diagnosis of positive remodelling of coronary arteries, using conventional CT scans.

DNS of helicity-induced stratified turbulent flow

NASA Astrophysics Data System (ADS)

Chandy, Abhilash J.; Rahimi, Abbas

2013-11-01

Helical flows undergoing density stratification have wide applications in meteorological phenomena such as dust devils, tornadoes, and hurricanes due to the complexity and disasters caused by them. Direct numerical simulations (DNS) of transition to turbulence in a stably stratified Boussinesq fluid are presented for different rotation and stratification intensities. In order to understand the effect of velocity on the energy cascade, comparisons are made between helicity initiated and non-helical flows. Results show that stratification decelerates the helicity decay and causes velocity and vorticity to align with each other. With respect to the helical and non-helical flow comparisons, the total energy in the presence of stratification decays faster with helicity. In addition, the behavior of length scales were examined by comparing temporal variations of the vertical shearing of velocities. Results showed a growing asymmetry with time in the case of helical flow, while non-helical flow stayed close to begin symmetric.

Splash control of drop impacts with geometric targets.

PubMed

Juarez, Gabriel; Gastopoulos, Thomai; Zhang, Yibin; Siegel, Michael L; Arratia, Paulo E

2012-02-01

Drop impacts on solid and liquid surfaces exhibit complex dynamics due to the competition of inertial, viscous, and capillary forces. After impact, a liquid lamella develops and expands radially, and under certain conditions, the outer rim breaks up into an irregular arrangement of filaments and secondary droplets. We show experimentally that the lamella expansion and subsequent breakup of the outer rim can be controlled by length scales that are of comparable dimension to the impacting drop diameter. Under identical impact parameters (i.e., fluid properties and impact velocity) we observe unique splashing dynamics by varying the target cross-sectional geometry. These behaviors include (i) geometrically shaped lamellae and (ii) a transition in splashing stability, from regular to irregular splashing. We propose that regular splashes are controlled by the azimuthal perturbations imposed by the target cross-sectional geometry and that irregular splashes are governed by the fastest-growing unstable Plateau-Rayleigh mode.

Landform Formation Under Ice Sheets

NASA Astrophysics Data System (ADS)

Schoof, C. G.; Ng, F. S.; Hallet, B.

2004-12-01

We present a new mathematical model for the formation of subglacial landforms such as drumlins under a warm-based, soft-bedded ice sheet. At the heart of the model is a channelized drainage system in which smaller channels grow at the expense of larger ones, leading to the continuous creation and extinction of drainage paths, and to a spatially distributed imprint on the landscape. We demonstrate how interactions between such a drainage system, bed topography and ice flow can lead to the spontaneous formation of subglacial landforms, and discuss the effect of different sediment transport characteristics in the drainage system on the shape and migration of these landforms. This mathematical model is the first component of a study of landscape/ice-sheet self-organization, which is inspired and guided, in part, by new digital topographic data (LIDAR) that are revealing with unprecedented detail the striking grain of glacially scoured topography on length scales ranging from 0.5 to 20 km.

Myco-fluidics: The fluid dynamics of fungal chimerism

NASA Astrophysics Data System (ADS)

Roper, Marcus; Hickey, Patrick; Dressaire, Emilie; Roch, Sebastien

2012-11-01

Chimeras-fantastical creatures formed as amalgams of many animals-have captured the human imagination since Ancient times. But they are also surprisingly common in Nature. The syncytial cells of filamentous fungi harbor large numbers of nuclei bathed in a single cytoplasm. As a fungus grows these nuclei become genetically diverse, either from mutation or from exchange of nuclei between different fungal individuals, a process that is known to increase the virulence of the fungus and its adaptability. By directly measuring nuclear movement in the model ascomycete fungus Neurospora crassa, we show that the fungus' tolerance for internal genetic diversity is enabled by hydrodynamic mixing of nuclei acting at all length scales within the fungal mycelium. Mathematical modeling and experiments in a mutant with altered mycelial morphology reveal some of the exquisite hydraulic engineering necessary to create these mixing flows from spatially coarse pressure gradients.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boreyko, Jonathan B; Mruetusatorn, Prachya; Sarles, Stephen A

Droplet interface bilayers (DIBs) are a robust platform for studying synthetic cellular membranes; however, to date no DIBs have been produced at cellular length scales. Here, we create microscale droplet interface bilayers ( DIBs) at the interface between aqueous femtoliter-volume droplets within an oil-filled microfluidic channel. The uniquely large area-to-volume ratio of the droplets results in strong evaporation effects, causing the system to transition through three distinct regimes. First, the two adjacent droplets shrink into the shape of a single spherical droplet, where an augmented lipid bilayer partitions two hemi-spherical volumes. In the second regime, the combined effects of themore » shrinking monolayers and growing bilayer force the confined bilayer to buckle to conserve its mass. Finally, at a bending moment corresponding to a critical shear stress, the buckling bilayer fissions a vesicle to regulate its shape and stress. The DIBs produced here enable evaporation-induced bilayer dynamics reminiscent of endo- and exocytosis in cells.« less

Dry-growth of silver single-crystal nanowires from porous Ag structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Chuantong, E-mail: chenchuantong@sanken.osaka-u.ac.jp; Nagao, Shijo; Jiu, Jinting

A fabrication method of single crystal Ag nanowires in large scale is introduced without any chemical synthesis in wet processes, which usually generates fivefold twinned nanowires of fcc metals. Dense single-crystal nanowires grow on a mechanically polished surface of micro-porous Ag structure, which is created from Ag micro-particles. The diameter and the length of the nanowires can be controlled simply by changing the temperature and the time of the heating during the nanowire growth in air. Unique growth mechanism is described in detail, based on stress-induced migration accelerated by the micro-porous structure where the origin of Ag nanowires growth ismore » incubated. Transmission electron microscopy analysis on the single crystal nanowires is also presented. This simple method offered an alternative preparation for metallic nanowires, especially with the single crystal structure in numerous applications.« less

Exactly solvable models of growing interfaces and lattice gases: the Arcetri models, ageing and logarithmic sub-ageing

NASA Astrophysics Data System (ADS)

Durang, Xavier; Henkel, Malte

2017-12-01

Motivated by an analogy with the spherical model of a ferromagnet, the three Arcetri models are defined. They present new universality classes, either for the growth of interfaces, or else for lattice gases. They are distinct from the common Edwards-Wilkinson and Kardar-Parisi-Zhang universality classes. Their non-equilibrium evolution can be studied by the exact computation of their two-time correlators and responses. In both interpretations, the first model has a critical point in any dimension and shows simple ageing at and below criticality. The exact universal exponents are found. The second and third model are solved at zero temperature, in one dimension, where both show logarithmic sub-ageing, of which several distinct types are identified. Physically, the second model describes a lattice gas and the third model describes interface growth. A clear physical picture on the subsequent time and length scales of the sub-ageing process emerges.

Crystallization process of a three-dimensional complex plasma

NASA Astrophysics Data System (ADS)

Steinmüller, Benjamin; Dietz, Christopher; Kretschmer, Michael; Thoma, Markus H.

2018-05-01

Characteristic timescales and length scales for phase transitions of real materials are in ranges where a direct visualization is unfeasible. Therefore, model systems can be useful. Here, the crystallization process of a three-dimensional complex plasma under gravity conditions is considered where the system ranges up to a large extent into the bulk plasma. Time-resolved measurements exhibit the process down to a single-particle level. Primary clusters, consisting of particles in the solid state, grow vertically and, secondarily, horizontally. The box-counting method shows a fractal dimension of df≈2.72 for the clusters. This value gives a hint that the formation process is a combination of local epitaxial and diffusion-limited growth. The particle density and the interparticle distance to the nearest neighbor remain constant within the clusters during crystallization. All results are in good agreement with former observations of a single-particle layer.

Understanding the Effects of Urban Expansion on Spatio-temporal Variations of Vegetation Phenology at Global Scale from 1993 to 2014

NASA Astrophysics Data System (ADS)

Qiu, T.; Song, C.

2017-12-01

Many studies have examined the urbanization-induced vegetation phenology changes in urban environments at regional scales. However, relatively few studies have investigated the effects of urban expansion on vegetation phenology at global scale. In this study, we used times series of NASA Vegetation Index and Phenology (VIP) and ESA Climate Change Initiative Land Cover datasets to quantify how urban expansion affects growing seasons of vegetation in 14 different biomes along both latitude and urbanization gradients from 1993 to 2014. First, we calculated the percentages of impervious surface area (ISA) at 0.05˚ grid to match the spatial resolution of VIP dataset. We then applied logistic models to the ISA series to characterize the time periods of stable ISA, pre-urbanization and post-urbanization for each grid. The amplitudes of urbanization were also derived from the fitted ISA series. We then calculated the mean values of the Start of Season (SOS), End of Season (EOS) and Length of Season (LOS) from VIP datasets within each period. Linear regressions were used to quantify the correlations between ISA and SOS/EOS/LOS in 14 biomes along the latitude gradient for each period. We also calculated the differences of SOS/EOS/LOS between pre-urbanization and post-urbanization periods and applied quantile regressions to characterize the relationships between amplitudes of urbanization and those differences. We found significant correlations (p-value < 0.05) between ISA and the growing seasons of a) boreal forests at 55-60 ˚N; b) temperate broadleaf and mixed forests at 30-55 ˚N; c) temperate coniferous forests at 30-45 ˚N; d) temperate grasslands, savannas, and shrublands at 35-60 ˚N and 30-35 ˚S. We also found a significant positive correlation (p-value <0.05) between amplitudes of urbanization and LOS as well as a significant negative correlation (p-value<0.05) between amplitudes of urbanization and SOS in temperate broadleaf and mixed forest.

Experimental and theoretical study of the spread of fluid from a point source on an inclined incontinence bed-pad.

PubMed

Eames, I; Small, I; Frampton, A; Cottenden, A M

2003-01-01

The spread of fluid from a localized source on to a flat fibrous sheet is studied. The sheet is inclined at an angle, alpha, to the horizontal, and the areal flux of the fluid released is Qa. A new experimental study is described where the dimensions of the wetted region are measured as a function of time t, Qa and alpha (>0). The down-slope length, Y, grows according to Y approximately (Qa t)(2/3) (sin alpha)(1/3); for high discharge rates and low angles of inclination, the cross-slope width, X, grows as approximately (Qa t)(1/2), while for low discharge rates or high angles of inclination, the cross-slope transport is dominated by infiltration and X approximately 2(2Ks psi* t)(1/2), where Ks is the saturated permeability and psi* is the characteristic value of capillary pressure. A scaling analysis of the underlying non-linear advection diffusion equation describing the infiltration process confirms many of the salient features of the flow observed. Good agreement is observed between the collapse of the numerical solutions and experimental results. The broader implications of these results for incontinence bed-pad research are briefly discussed.

Controllable Growth of Perovskite Films by Room-Temperature Air Exposure for Efficient Planar Heterojunction Photovoltaic Cells

DOE PAGES

Yang, Bin; Dyck, Ondrej; Poplawsky, Jonathan; ...

2015-12-01

A two-step-solution-processing approach has been established to grow void-free perovskite films for low-cost and high-performance planar heterojunction photovoltaic devices. We generally applied a high-temperature thermal annealing treatment in order to drive the diffusion of CH 3NH 3I precursor molecules into the compact PbI 2 layer to form perovskite films. But, thermal annealing for extended periods would lead to degraded device performance due to the defects generated by decomposition of perovskite into PbI 2. In this work, we explored a controllable layer-by-layer spin-coating method to grow bilayer CH 3NH 3I/PbI 2 films, and then drive the interdiffusion between PbI 2 andmore » CH 3NH 3I layers by a simple room-temperature-air-exposure for making well-oriented, highly-crystalline perovskite films without thermal annealing. This high degree of crystallinity resulted in a carrier diffusion length of ~ 800 nm and high device efficiency of 15.6%, which is comparable to the reported values from thermally-annealed perovskite films based counterparts. Finally, the simplicity and high device performance of this processing approach is highly promising for direct integration into industrial-scale device manufacture.« less

Response of the Morus bombycis growing season to temperature and its latitudinal pattern in Japan.

PubMed

Doi, Hideyuki

2012-09-01

Changes in leaf phenology lengthen the growing season length (GSL, the days between leaf budburst and leaf fall) under the global warming. GSL and the leaf phenology response to climate change is one of the most important predictors of climate change effect on plants. Empirical evidence of climatic effects on GSL remains scarce, especially at a regional scale and the latitudinal pattern. This study analyzed the datasets of leaf budburst and fall phenology in Morus bombycis (Urticales), which were observed by the agency of the Japan Meteorological Agency (JMA) from 1953 to 2005 over a wide range of latitudes in Japan (31 to 44° N). In the present study, single regression slopes of leaf phenological timing and air temperature across Japan were calculated and their spatial patterns using general linear models were tested. The results showed that the GSL extension was caused mainly by a delay in leaf fall phenology. Relationships between latitude and leaf phenological and GSL responses against air temperature were significantly negative. The response of leaf phenology and GSL to air temperature at lower latitudes was larger than that at higher latitudes. The findings indicate that GSL extension should be considered with regards to latitude and climate change.

Elliptic Length Scales in Laminar, Two-Dimensional Supersonic Flows

DTIC Science & Technology

2015-06-01

sophisticated computational fluid dynamics ( CFD ) methods. Additionally, for 3D interactions, the length scales would require determination in spanwise as well...Manna, M. “Experimental, Analytical, and Computational Methods Applied to Hypersonic Compression Ramp Flows,” AIAA Journal, Vol. 32, No. 2, Feb. 1994

Monitoring start of season in Alaska with GLOBE, AVHRR, and MODIS data

NASA Astrophysics Data System (ADS)

Robin, Jessica; Dubayah, Ralph; Sparrow, Elena; Levine, Elissa

2008-03-01

This work evaluates whether continuity between Advanced Very High Resolution Radiometer (AVHRR) and Moderate Resolution Imaging Spectroradiometer (MODIS) normalized difference vegetation index (NDVI) is achievable for monitoring phenological changes in Alaska. This work also evaluates whether NDVI can detect changes in start of the growing season (SOS) in this region. Six quadratic regression models with NDVI as a function of accumulated growing degree days (AGDD) were developed from 2001 through 2004 AVHRR and MODIS NDVI data sets for urban, mixed, and forested land covers. Model parameters determined NDVI values for start of the observational period as well as peak and length of the growing season. NDVI values for start of the growing season were determined from the model equations and field observations of SOS made by GLOBE students and researchers at University of Alaska Fairbanks. AGDD was computed from daily air temperature. AVHRR and MODIS models were significantly different from one another with differences in the start of the observational season as well as start, peak, and length of the growing season. Furthermore, AGDD for SOS was significantly lower during the 1990s than the 1980s. NDVI values at SOS did not detect this change. There are limitations with using NDVI to monitor phenological changes in these regions because of snow, the large extent of conifers, and clouds, which restrict the composite period. In addition, differing processing and spectral characteristics restrict continuity between AVHRR and MODIS NDVI data sets.

Many-body localization transition: Schmidt gap, entanglement length, and scaling

NASA Astrophysics Data System (ADS)

Gray, Johnnie; Bose, Sougato; Bayat, Abolfazl

2018-05-01

Many-body localization has become an important phenomenon for illuminating a potential rift between nonequilibrium quantum systems and statistical mechanics. However, the nature of the transition between ergodic and localized phases in models displaying many-body localization is not yet well understood. Assuming that this is a continuous transition, analytic results show that the length scale should diverge with a critical exponent ν ≥2 in one-dimensional systems. Interestingly, this is in stark contrast with all exact numerical studies which find ν ˜1 . We introduce the Schmidt gap, new in this context, which scales near the transition with an exponent ν >2 compatible with the analytical bound. We attribute this to an insensitivity to certain finite-size fluctuations, which remain significant in other quantities at the sizes accessible to exact numerical methods. Additionally, we find that a physical manifestation of the diverging length scale is apparent in the entanglement length computed using the logarithmic negativity between disjoint blocks.

Application of Mortar Coupling in Multiscale Modelling of Coupled Flow, Transport, and Biofilm Growth in Porous Media

NASA Astrophysics Data System (ADS)

Laleian, A.; Valocchi, A. J.; Werth, C. J.

2017-12-01

Multiscale models of reactive transport in porous media are capable of capturing complex pore-scale processes while leveraging the efficiency of continuum-scale models. In particular, porosity changes caused by biofilm development yield complex feedbacks between transport and reaction that are difficult to quantify at the continuum scale. Pore-scale models, needed to accurately resolve these dynamics, are often impractical for applications due to their computational cost. To address this challenge, we are developing a multiscale model of biofilm growth in which non-overlapping regions at pore and continuum spatial scales are coupled with a mortar method providing continuity at interfaces. We explore two decompositions of coupled pore-scale and continuum-scale regions to study biofilm growth in a transverse mixing zone. In the first decomposition, all reaction is confined to a pore-scale region extending the transverse mixing zone length. Only solute transport occurs in the surrounding continuum-scale regions. Relative to a fully pore-scale result, we find the multiscale model with this decomposition has a reduced run time and consistent result in terms of biofilm growth and solute utilization. In the second decomposition, reaction occurs in both an up-gradient pore-scale region and a down-gradient continuum-scale region. To quantify clogging, the continuum-scale model implements empirical relations between porosity and continuum-scale parameters, such as permeability and the transverse dispersion coefficient. Solutes are sufficiently mixed at the end of the pore-scale region, such that the initial reaction rate is accurately computed using averaged concentrations in the continuum-scale region. Relative to a fully pore-scale result, we find accuracy of biomass growth in the multiscale model with this decomposition improves as the interface between pore-scale and continuum-scale regions moves downgradient where transverse mixing is more fully developed. Also, this decomposition poses additional challenges with respect to mortar coupling. We explore these challenges and potential solutions. While recent work has demonstrated growing interest in multiscale models, further development is needed for their application to field-scale subsurface contaminant transport and remediation.

Different Amounts of DNA in Newborn Cells of Escherichia coli Preclude a Role for the Chromosome in Size Control According to the "Adder" Model.

PubMed

Huls, Peter G; Vischer, Norbert O E; Woldringh, Conrad L

2018-01-01

According to the recently-revived adder model for cell size control, newborn cells of Escherichia coli will grow and divide after having added a constant size or length, ΔL , irrespective of their size at birth. Assuming exponential elongation, this implies that large newborns will divide earlier than small ones. The molecular basis for the constant size increment is still unknown. As DNA replication and cell growth are coordinated, the constant ΔL could be based on duplication of an equal amount of DNA, ΔG , present in newborn cells. To test this idea, we measured amounts of DNA and lengths of nucleoids in DAPI-stained cells growing in batch culture at slow and fast rates. Deeply-constricted cells were divided in two subpopulations of longer and shorter lengths than average; these were considered to represent large and small prospective daughter cells, respectively. While at slow growth, large and small prospective daughter cells contained similar amounts of DNA, fast growing cells with multiforked replicating chromosomes, showed a significantly higher amount of DNA (20%) in the larger cells. This observation precludes the hypothesis that Δ L is based on the synthesis of a constant ΔG . Growth curves were constructed for siblings generated by asymmetric division and growing according to the adder model. Under the assumption that all cells at the same growth rate exhibit the same time between initiation of DNA replication and cell division (i.e., constant C+D -period), the constructions predict that initiation occurs at different sizes ( Li ) and that, at fast growth, large newborn cells transiently contain more DNA than small newborns, in accordance with the observations. Because the state of segregation, measured as the distance between separated nucleoids, was found to be more advanced in larger deeply-constricted cells, we propose that in larger newborns nucleoid separation occurs faster and at a shorter length, allowing them to divide earlier. We propose a composite model in which both differential initiation and segregation leads to an adder-like behavior of large and small newborn cells.

A phenomenological description of space-time noise in quantum gravity.

PubMed

Amelino-Camelia, G

2001-04-26

Space-time 'foam' is a geometric picture of the smallest size scales in the Universe, which is characterized mainly by the presence of quantum uncertainties in the measurement of distances. All quantum-gravity theories should predict some kind of foam, but the description of the properties of this foam varies according to the theory, thereby providing a possible means of distinguishing between such theories. I previously showed that foam-induced distance fluctuations would introduce a new source of noise to the measurements of gravity-wave interferometers, but the theories are insufficiently developed to permit detailed predictions that would be of use to experimentalists. Here I propose a phenomenological approach that directly describes space-time foam, and which leads naturally to a picture of distance fluctuations that is independent of the details of the interferometer. The only unknown in the model is the length scale that sets the overall magnitude of the effect, but recent data already rule out the possibility that this length scale could be identified with the 'string length' (10-34 m < Ls < 10-33 m). Length scales even smaller than the 'Planck length' (LP approximately 10-35 m) will soon be probed experimentally.

Geostatistics and the representative elementary volume of gamma ray tomography attenuation in rocks cores

USGS Publications Warehouse

Vogel, J.R.; Brown, G.O.

2003-01-01

Semivariograms of samples of Culebra Dolomite have been determined at two different resolutions for gamma ray computed tomography images. By fitting models to semivariograms, small-scale and large-scale correlation lengths are determined for four samples. Different semivariogram parameters were found for adjacent cores at both resolutions. Relative elementary volume (REV) concepts are related to the stationarity of the sample. A scale disparity factor is defined and is used to determine sample size required for ergodic stationarity with a specified correlation length. This allows for comparison of geostatistical measures and representative elementary volumes. The modifiable areal unit problem is also addressed and used to determine resolution effects on correlation lengths. By changing resolution, a range of correlation lengths can be determined for the same sample. Comparison of voxel volume to the best-fit model correlation length of a single sample at different resolutions reveals a linear scaling effect. Using this relationship, the range of the point value semivariogram is determined. This is the range approached as the voxel size goes to zero. Finally, these results are compared to the regularization theory of point variables for borehole cores and are found to be a better fit for predicting the volume-averaged range.

Temporal Downscaling of Crop Coefficient and Crop Water Requirement from Growing Stage to Substage Scales

PubMed Central

Shang, Songhao

2012-01-01

Crop water requirement is essential for agricultural water management, which is usually available for crop growing stages. However, crop water requirement values of monthly or weekly scales are more useful for water management. A method was proposed to downscale crop coefficient and water requirement from growing stage to substage scales, which is based on the interpolation of accumulated crop and reference evapotranspiration calculated from their values in growing stages. The proposed method was compared with two straightforward methods, that is, direct interpolation of crop evapotranspiration and crop coefficient by assuming that stage average values occurred in the middle of the stage. These methods were tested with a simulated daily crop evapotranspiration series. Results indicate that the proposed method is more reliable, showing that the downscaled crop evapotranspiration series is very close to the simulated ones. PMID:22619572

Adult Chinese as a Second Language Learners' Willingness to Communicate in Chinese: Effects of Cultural, Affective, and Linguistic Variables.

PubMed

Liu, Meihua

2017-06-01

The present research explored the effects of cultural, affective, and linguistic variables on adult Chinese as a second language learners' willingness to communicate in Chinese. One hundred and sixty-two Chinese as a second language learners from a Chinese university answered the Willingness to Communicate in Chinese Scale, the Intercultural Sensitivity Scale, Chinese Speaking Anxiety Scale, Chinese Learning Motivation Scale, Use of Chinese Profile, as well as the Background Questionnaire. The major findings were as follows: (1) the Willingness to Communicate in Chinese Scales were significantly negatively correlated with Chinese Speaking Anxiety Scale but positively correlated with length of stay in China and (2) Chinese Speaking Anxiety Scale was a powerful negative predictor for the overall willingness to communicate in Chinese and the Willingness to Communicate in Chinese Scales, followed by length of stay in China, Chinese Learning Motivation Scale, interaction attentiveness, and Chinese proficiency level. Apparently, students' willingness to communicate in Chinese is largely determined by their Chinese Speaking Anxiety Scale level and length of stay in China, mediated by other variables such as Chinese proficiency level and intercultural communication sensitivity level.

Magnesite Dissolution Rates Across Scales: Role of Spatial Heterogeneity, Equilibrium Lengths, and Reactive Time Scales

NASA Astrophysics Data System (ADS)

Wen, H.; Li, L.

2017-12-01

This work develops a general rate law for magnesite dissolution in heterogeneous media under variable flow and length conditions, expanding the previous work under one particular flow and length conditions (Wen and Li, 2017). We aim to answer: 1) How does spatial heterogeneity influence the time and length scales to reach equilibrium? 2) How do relative timescales of advection, diffusion/dispersion, and reactions influence dissolution rates under variable flow and length conditions? We carried out 640 Monte-Carlo numerical experiments of magnesite dissolution within quartz matrix with heterogeneity characterized by permeability variance and correlation length under a range of length and flow velocity. A rate law Rhete = kAT(1-exp(τeq,m/τa))(1-exp(- Lβ))^α was developed. The former part is rates in equivalent homogeneous media kAT(1-exp(τeq,m/τa)), depending on rate constant k, magnesite surface area AT, and relative timescales of reactions τeq,m and advection τa. The latter term (1-exp(- Lβ))^α is the heterogeneity factor χ that quantifies the deviation of heterogeneous media from its homogeneous counterpart. The term has a scaling factor, called reactive transport number β=τa/(τad,r+τeq,m), for domain length L, and the geostatistical characteristics of heterogeneity α. The β quantifies the relative timescales of advection at the domain scale τa versus the advective-diffusive-dispersive transport time out of reactive zones τad,r and reaction time τeq,m. The χ is close to 1 and is insignificant under long residence time conditions (low flow velocity and / or long length) where the residence time is longer than the time needed for Mg to dissolve and transport out of reactive zones (τad,r+τeq,m) so that equilibrium is reached and homogenization occurs. In contrast, χ deviates from 1 and is significant only when β is small, which occurs at short length or fast flow where timescales of reactive transport in reactive zones are much longer than the global residence time so that reactive transport is the limiting step. These findings demonstrate that dissolution rates in heterogeneous media reach asymptotic values in homogeneous media at "sufficiently" long lengths. Wen, H. and Li, L. (2017) An upscaled rate law for magnesite dissolution in heterogeneous porous media. Geochimica et Cosmochimica Acta 210, 289-305.

Hydrodynamic simulations of long-scale-length two-plasmon-decay experiments at the Omega Laser Facility

NASA Astrophysics Data System (ADS)

Hu, S. X.; Michel, D. T.; Edgell, D. H.; Froula, D. H.; Follett, R. K.; Goncharov, V. N.; Myatt, J. F.; Skupsky, S.; Yaakobi, B.

2013-03-01

Direct-drive-ignition designs with plastic CH ablators create plasmas of long density scale lengths (Ln ≥ 500 μm) at the quarter-critical density (Nqc) region of the driving laser. The two-plasmon-decay (TPD) instability can exceed its threshold in such long-scale-length plasmas (LSPs). To investigate the scaling of TPD-induced hot electrons to laser intensity and plasma conditions, a series of planar experiments have been conducted at the Omega Laser Facility with 2-ns square pulses at the maximum laser energies available on OMEGA and OMEGA EP. Radiation-hydrodynamic simulations have been performed for these LSP experiments using the two-dimensional hydrocode draco. The simulated hydrodynamic evolution of such long-scale-length plasmas has been validated with the time-resolved full-aperture backscattering and Thomson-scattering measurements. draco simulations for CH ablator indicate that (1) ignition-relevant long-scale-length plasmas of Ln approaching ˜400 μm have been created; (2) the density scale length at Nqc scales as Ln(μm)≃(RDPP×I1/4/2); and (3) the electron temperature Te at Nqc scales as Te(keV)≃0.95×√I , with the incident intensity (I) measured in 1014 W/cm2 for plasmas created on both OMEGA and OMEGA EP configurations with different-sized (RDPP) distributed phase plates. These intensity scalings are in good agreement with the self-similar model predictions. The measured conversion fraction of laser energy into hot electrons fhot is found to have a similar behavior for both configurations: a rapid growth [fhot≃fc×(Gc/4)6 for Gc < 4] followed by a saturation of the form, fhot≃fc×(Gc/4)1.2 for Gc ≥ 4, with the common wave gain is defined as Gc=3 × 10-2×IqcLnλ0/Te, where the laser intensity contributing to common-wave gain Iqc, Ln, Te at Nqc, and the laser wavelength λ0 are, respectively, measured in [1014 W/cm2], [μm], [keV], and [μm]. The saturation level fc is observed to be fc ≃ 10-2 at around Gc ≃ 4. The hot-electron temperature scales roughly linear with Gc. Furthermore, to mitigate TPD instability in long-scale-length plasmas, different ablator materials such as saran and aluminum have been investigated on OMEGA EP. Hot-electron generation has been reduced by a factor of 3-10 for saran and aluminum plasmas, compared to the CH case at the same incident laser intensity. draco simulations suggest that saran might be a better ablator for direct-drive-ignition designs as it balances TPD mitigation with an acceptable hydro-efficiency.

Carbon nanotube conditioning: ab initio simulations of the effect of defects and doping on the electronic properties of carbon nanotube systems.

NASA Astrophysics Data System (ADS)

Soto, Matias; Barrera, Enrique

Using carbon nanotubes for electrical conduction applications at the macroscale has proven to be a difficult task, mainly, due to defects and impurities present, and lack of uniform electronic properties in synthesized carbon nanotube bundles. Some researchers have suggested that growing only metallic armchair nanotubes and arranging them with an ideal contact length could lead to the ultimate electrical conductivity; however, such recipe presents too high of a cost to pay. A different route and the topic of this work is to learn to manage the defects, impurities, and the electronic properties of carbon nanotubes present, so that the electrical conduction of a bundle or even wire may be enhanced. We used density functional theory calculations to study the effect of defects and doping on the electronic structure of metallic, semi-metal and semiconducting carbon nanotubes in order to gain a clear picture of their properties. Additionally, using dopants to increase the conductance across a junction between two carbon nanotubes was studied for different configurations. Finally, interaction potentials obtained via first-principles calculations were generalized by developing mathematical models for the purpose of running simulations at a larger length scale using molecular dynamics. Partial funding was received from CONACyT Scholarship 314419.

DNA confinement in nanochannels: physics and biological applications

NASA Astrophysics Data System (ADS)

Reisner, Walter; Pedersen, Jonas N.; Austin, Robert H.

2012-10-01

DNA is the central storage molecule of genetic information in the cell, and reading that information is a central problem in biology. While sequencing technology has made enormous advances over the past decade, there is growing interest in platforms that can readout genetic information directly from long single DNA molecules, with the ultimate goal of single-cell, single-genome analysis. Such a capability would obviate the need for ensemble averaging over heterogeneous cellular populations and eliminate uncertainties introduced by cloning and molecular amplification steps (thus enabling direct assessment of the genome in its native state). In this review, we will discuss how the information contained in genomic-length single DNA molecules can be accessed via physical confinement in nanochannels. Due to self-avoidance interactions, DNA molecules will stretch out when confined in nanochannels, creating a linear unscrolling of the genome along the channel for analysis. We will first review the fundamental physics of DNA nanochannel confinement—including the effect of varying ionic strength—and then discuss recent applications of these systems to genomic mapping. Apart from the intense biological interest in extracting linear sequence information from elongated DNA molecules, from a physics view these systems are fascinating as they enable probing of single-molecule conformation in environments with dimensions that intersect key physical length-scales in the 1 nm to 100 µm range.

A simplified model predicting the weight of the load carrying beam in a wind turbine blade

NASA Astrophysics Data System (ADS)

Mikkelsen, Lars P.

2016-07-01

Based on a simplified beam model, the loads, stresses and deflections experienced by a wind turbine blade of a given length is estimated. Due to the simplicity of the model used, the model is well suited for work investigating scaling effects of wind turbine blades. Presently, the model is used to predict the weight of the load carrying beam when using glass fibre reinforced polymers, carbon fibre reinforced polymers or an aluminium alloy as the construction material. Thereby, it is found that the weight of a glass fibre wind turbine blade is increased from 0.5 to 33 tons when the blade length grows from 20 to 90 m. In addition, it can be seen that for a blade using glass fibre reinforced polymers, the design is controlled by the deflection and thereby the material stiffness in order to avoid the blade to hit the tower. On the other hand if using aluminium, the design will be controlled by the fatigue resistance in order to making the material survive the 100 to 500 million load cycles experience of the wind turbine blade throughout the lifetime. The aluminium blade is also found to be considerably heavier compared with the composite blades.

Statistical Mechanics Provides Novel Insights into Microtubule Stability and Mechanism of Shrinkage

PubMed Central

Jain, Ishutesh; Inamdar, Mandar M.; Padinhateeri, Ranjith

2015-01-01

Microtubules are nano-machines that grow and shrink stochastically, making use of the coupling between chemical kinetics and mechanics of its constituent protofilaments (PFs). We investigate the stability and shrinkage of microtubules taking into account inter-protofilament interactions and bending interactions of intrinsically curved PFs. Computing the free energy as a function of PF tip position, we show that the competition between curvature energy, inter-PF interaction energy and entropy leads to a rich landscape with a series of minima that repeat over a length-scale determined by the intrinsic curvature. Computing Langevin dynamics of the tip through the landscape and accounting for depolymerization, we calculate the average unzippering and shrinkage velocities of GDP protofilaments and compare them with the experimentally known results. Our analysis predicts that the strength of the inter-PF interaction (Ems) has to be comparable to the strength of the curvature energy (Emb) such that Ems−Emb≈1kBT, and questions the prevalent notion that unzippering results from the domination of bending energy of curved GDP PFs. Our work demonstrates how the shape of the free energy landscape is crucial in explaining the mechanism of MT shrinkage where the unzippered PFs will fluctuate in a set of partially peeled off states and subunit dissociation will reduce the length. PMID:25692909

DNA confinement in nanochannels: physics and biological applications.

PubMed

Reisner, Walter; Pedersen, Jonas N; Austin, Robert H

2012-10-01

DNA is the central storage molecule of genetic information in the cell, and reading that information is a central problem in biology. While sequencing technology has made enormous advances over the past decade, there is growing interest in platforms that can readout genetic information directly from long single DNA molecules, with the ultimate goal of single-cell, single-genome analysis. Such a capability would obviate the need for ensemble averaging over heterogeneous cellular populations and eliminate uncertainties introduced by cloning and molecular amplification steps (thus enabling direct assessment of the genome in its native state). In this review, we will discuss how the information contained in genomic-length single DNA molecules can be accessed via physical confinement in nanochannels. Due to self-avoidance interactions, DNA molecules will stretch out when confined in nanochannels, creating a linear unscrolling of the genome along the channel for analysis. We will first review the fundamental physics of DNA nanochannel confinement--including the effect of varying ionic strength--and then discuss recent applications of these systems to genomic mapping. Apart from the intense biological interest in extracting linear sequence information from elongated DNA molecules, from a physics view these systems are fascinating as they enable probing of single-molecule conformation in environments with dimensions that intersect key physical length-scales in the 1 nm to 100 µm range.

Procedure for Determining Turbulence Length Scales Using Hotwire Anemometry

NASA Technical Reports Server (NTRS)

El-Gabry, Lamyaa A.; Thurman, Douglas R.; Poinsatte, Philip E.

2014-01-01

Hotwire anemometers are used to measure instantaneous velocity from which the mean velocity and the velocity fluctuation can be determined. Using a hotwire system, it is possible to deduce not only the velocity components and their fluctuation but to also analyze the energy spectra and from that the turbulence length scales. In this experiment, hotwire anemometry is used to measure the flow field turbulence for an array of film cooling holes. The objective of this paper is to document the procedure that is used to reduce the instantaneous velocity measurements to determine the turbulence length scales using data from the film-cooling experiments to illustrate the procedure.

Biometrical relationships in developing eggs and neonates of Octopus vulgaris in relation to parental diet

NASA Astrophysics Data System (ADS)

Márquez, Lorenzo; Quintana, Daniel; Lorenzo, Antonio; Almansa, Eduardo

2013-09-01

Captive Octopus vulgaris adults were fed three mono-diets based on pilchard, crab and squid and allowed to grow until reproduction under controlled temperature. Spawns from each dietary treatment were isolated, and the embryonic development, egg length, width and wet weight, in addition to neonate dry weight, dorsal mantle length and ventral mantle length were monitored. Pilchard-diet spawns developed faster in terms of thermal time. Initial egg wet weight was higher for squid and crab diets. Irrespective of the parental diet, eggs passed through a swelling process so that egg width and wet weight increased in a nonlinear way, whereas egg length was left nearly unaffected. Egg length and initial wet weight showed a high correlation with neonate dry weight. Egg length, even at advanced incubation, can be used as a good proxy for neonate dry weight, this fact having potential implications for the ecological and aquaculture research on O. vulgaris.

Factors affecting length of stay in forensic hospital setting: need for therapeutic security and course of admission.

PubMed

Davoren, Mary; Byrne, Orla; O'Connell, Paul; O'Neill, Helen; O'Reilly, Ken; Kennedy, Harry G

2015-11-23

Patients admitted to a secure forensic hospital are at risk of a long hospital stay. Forensic hospital beds are a scarce and expensive resource and ability to identify the factors predicting length of stay at time of admission would be beneficial. The DUNDRUM-1 triage security scale and DUNDRUM-2 triage urgency scale are designed to assess need for therapeutic security and urgency of that need while the HCR-20 predicts risk of violence. We hypothesized that items on the DUNDRUM-1 and DUNDRUM-2 scales, rated at the time of pre-admission assessment, would predict length of stay in a medium secure forensic hospital setting. This is a prospective study. All admissions to a medium secure forensic hospital setting were collated over a 54 month period (n = 279) and followed up for a total of 66 months. Each patient was rated using the DUNDRUM-1 triage security scale and DUNDRUM-2 triage urgency scale as part of a pre-admission assessment (n = 279) and HCR-20 within 2 weeks of admission (n = 187). Episodes of harm to self, harm to others and episodes of seclusion whilst an in-patient were collated. Date of discharge was noted for each individual. Diagnosis at the time of pre-admission assessment (adjustment disorder v other diagnosis), predicted legal status (sentenced v mental health order) and items on the DUNDRUM-1 triage security scale and the DUNDRUM-2 triage urgency scale, also rated at the time of pre-admission assessment, predicted length of stay in the forensic hospital setting. Need for seclusion following admission also predicted length of stay. These findings may form the basis for a structured professional judgment instrument, rated prior to or at time of admission, to assist in estimating length of stay for forensic patients. Such a tool would be useful to clinicians, service planners and commissioners given the high cost of secure psychiatric care.

Recent assimilation developments of FOAM the Met Office ocean forecast system

NASA Astrophysics Data System (ADS)

Lea, Daniel; Martin, Matthew; Waters, Jennifer; Mirouze, Isabelle; While, James; King, Robert

2015-04-01

FOAM is the Met Office's operational ocean forecasting system. This system comprises a range of models from a 1/4 degree resolution global to 1/12 degree resolution regional models and shelf seas models at 7 km resolution. The system is made up of the ocean model NEMO (Nucleus for European Modeling of the Ocean), the Los Alomos sea ice model CICE and the NEMOVAR assimilation run in 3D-VAR FGAT mode. Work is ongoing to transition to both a higher resolution global ocean model at 1/12 degrees and to run FOAM in coupled models. The FOAM system generally performs well. One area of concern however is the performance in the tropics where spurious oscillations and excessive vertical velocity gradients are found after assimilation. NEMOVAR includes a balance operator which in the extra-tropics uses geostrophic balance to produce velocity increments which balance the density increments applied. In the tropics, however, the main balance is between the pressure gradients produced by the density gradient and the applied wind stress. A scheme is presented which aims to maintain this balance when increments are applied. Another issue in FOAM is that there are sometimes persistent temperature and salinity errors which are not effectively corrected by the assimilation. The standard NEMOVAR has a single correlation length scale based on the local Rossby radius. This means that observations in the extra tropics have influence on the model only on short length-scales. In order to maximise the information extracted from the observations and to correct large scale model biases a multiple correlation length-scale scheme has been developed. This includes a larger length scale which spreads observation information further. Various refinements of the scheme are also explored including reducing the longer length scale component at the edge of the sea ice and in areas with high potential vorticity gradients. A related scheme which varies the correlation length scale in the shelf seas is also described.

Heterogeneous nucleation of a droplet pinned at a chemically inhomogeneous substrate: A simulation study of the two-dimensional Ising case

NASA Astrophysics Data System (ADS)

Trobo, Marta L.; Albano, Ezequiel V.; Binder, Kurt

2018-03-01

Heterogeneous nucleation is studied by Monte Carlo simulations and phenomenological theory, using the two-dimensional lattice gas model with suitable boundary fields. A chemical inhomogeneity of length b at one boundary favors the liquid phase, while elsewhere the vapor is favored. Switching on the bulk field Hb favoring the liquid, nucleation and growth of the liquid phase starting from the region of the chemical inhomogeneity are analyzed. Three regimes occur: for small fields, HbHb*), the droplets nucleated at the chemical inhomogeneity grow to the full system size. While the relaxation time for the growth scales as τG∝Hb-1, the nucleation time τN scales as ln τN∝Hb-1. However, the prefactor in the latter relation, as evaluated for our simulations results, is not in accord with an extension of the Volmer-Turnbull theory to two-dimensions, when the theoretical contact angle θc is used.

The Child-Adolescent Perfectionism Scale: Development, Psychometric Properties, and Associations With Stress, Distress, and Psychiatric Symptoms

ERIC Educational Resources Information Center

Flett, Gordon L.; Hewitt, Paul L.; Besser, Avi; Su, Chang; Vaillancourt, Tracy; Boucher, Daniel; Munro, Yvette; Davidson, Lisa A.; Gale, Olga

2016-01-01

There is growing interest in perfectionism among children and adolescents as well as growing interest in the measures designed to assess perfectionism in young people. The current article describes the development and psychometric characteristics of the Child-Adolescent Perfectionism Scale (CAPS), a measure that assesses self-oriented…

Universality from disorder in the random-bond Blume-Capel model

NASA Astrophysics Data System (ADS)

Fytas, N. G.; Zierenberg, J.; Theodorakis, P. E.; Weigel, M.; Janke, W.; Malakis, A.

2018-04-01

Using high-precision Monte Carlo simulations and finite-size scaling we study the effect of quenched disorder in the exchange couplings on the Blume-Capel model on the square lattice. The first-order transition for large crystal-field coupling is softened to become continuous, with a divergent correlation length. An analysis of the scaling of the correlation length as well as the susceptibility and specific heat reveals that it belongs to the universality class of the Ising model with additional logarithmic corrections which is also observed for the Ising model itself if coupled to weak disorder. While the leading scaling behavior of the disordered system is therefore identical between the second-order and first-order segments of the phase diagram of the pure model, the finite-size scaling in the ex-first-order regime is affected by strong transient effects with a crossover length scale L*≈32 for the chosen parameters.

Correspondence: Reply to ‘Phantom phonon localization in relaxors’

DOE PAGES

Manley, Michael E.; Abernathy, Douglas L.; Budai, John D.

2017-12-05

The Correspondence by Gehring et al. mistakes Anderson phonon localization for the concept of an atomic-scale local mode. An atomic-scale local mode refers to a single atom vibrating on its own within a crystal. Such a local mode will have an almost flat intensity profile, but this is not the same as phonon localization. Anderson localization is a wave interference effect in a disordered system that results in waves becoming spatially localized. The length scale of the localized waves is set by the wavelength, which is approximately 2 nm in this case. This larger length scale in real space meansmore » narrower intensity profiles in reciprocal space. Here, we conclude that the claims in the Correspondence by Gehring et al. are incorrect because they mistakenly assume that the length scale for Anderson localization is atomic, and because the experimental observations rule out multiple scattering as the origin.« less

Correspondence: Reply to ‘Phantom phonon localization in relaxors’

DOE Office of Scientific and Technical Information (OSTI.GOV)

Manley, Michael E.; Abernathy, Douglas L.; Budai, John D.

The Correspondence by Gehring et al. mistakes Anderson phonon localization for the concept of an atomic-scale local mode. An atomic-scale local mode refers to a single atom vibrating on its own within a crystal. Such a local mode will have an almost flat intensity profile, but this is not the same as phonon localization. Anderson localization is a wave interference effect in a disordered system that results in waves becoming spatially localized. The length scale of the localized waves is set by the wavelength, which is approximately 2 nm in this case. This larger length scale in real space meansmore » narrower intensity profiles in reciprocal space. Here, we conclude that the claims in the Correspondence by Gehring et al. are incorrect because they mistakenly assume that the length scale for Anderson localization is atomic, and because the experimental observations rule out multiple scattering as the origin.« less

Flexible chain molecules in the marginal and concentrated regimes: universal static scaling laws and cross-over predictions.

PubMed

Laso, Manuel; Karayiannis, Nikos Ch

2008-05-07

We present predictions for the static scaling exponents and for the cross-over polymer volumetric fractions in the marginal and concentrated solution regimes. Corrections for finite chain length are made. Predictions are based on an analysis of correlated fluctuations in density and chain length, in a semigrand ensemble in which mers and solvent sites exchange identities. Cross-over volumetric fractions are found to be chain length independent to first order, although reciprocal-N corrections are also estimated. Predicted scaling exponents and cross-over regimes are compared with available data from extensive off-lattice Monte Carlo simulations [Karayiannis and Laso, Phys. Rev. Lett. 100, 050602 (2008)] on freely jointed, hard-sphere chains of average lengths from N=12-500 and at packing densities from dilute ones up to the maximally random jammed state.

Effect of von Karman Vortex Shedding on Regular and Open-slit V-gutter Stabilized Turbulent Premixed Flames

DTIC Science & Technology

2012-04-01

Both flame lengths shrink and large scale disruptions occur downstream with vortex shedding carrying reaction zones. Flames in both flameholders...9) the flame structure changes dramatically for both regular and open-slit V-gutter. Both flame lengths shrink and large scale disruptions occur...reduces the flame length . However, qualitatively the open-slit V-gutter appears to be more sensitive than the regular V-gutter. Both flames remain

Evaluation of removal of the size effect using data scaling and elliptic Fourier descriptors in otolith shape analysis, exemplified by the discrimination of two yellow croaker stocks along the Chinese coast

NASA Astrophysics Data System (ADS)

Zhao, Bo; Liu, Jinhu; Song, Junjie; Cao, Liang; Dou, Shuozeng

2017-11-01

Removal of the length effect in otolith shape analysis for stock identification using length scaling is an important issue; however, few studies have attempted to investigate the effectiveness or weakness of this methodology in application. The aim of this study was to evaluate whether commonly used size scaling methods and normalized elliptic Fourier descriptors (NEFDs) could effectively remove the size effect of fish in stock discrimination. To achieve this goal, length groups from two known geographical stocks of yellow croaker, Larimichthys polyactis, along the Chinese coast (five groups from the Changjiang River estuary of the East China Sea and three groups from the Bohai Sea) were subjected to otolith shape analysis. The results indicated that the variation of otolith shape caused by intra-stock fish length might exceed that due to inter-stock geographical separation, even when otolith shape variables are standardized with length scaling methods. This variation could easily result in misleading stock discrimination through otolith shape analysis. Therefore, conclusions about fish stock structure should be carefully drawn from otolith shape analysis because the observed discrimination may primarily be due to length effects, rather than differences among stocks. The application of multiple methods, such as otoliths shape analysis combined with elemental fingering, tagging or genetic analysis, is recommended for sock identification.

Still searching for the Holy Grail: on the use of effective soil parameters for Parflow-CLM.

NASA Astrophysics Data System (ADS)

Baroni, Gabriele; Schalge, Bernd; Rihani, Jehan; Attinger, Sabine

2015-04-01

In the last decades the advances in computer science have led to a growing number of coupled and distributed hydrological models based on Richards' equation. Several studies were conducted for understanding hydrological processes at different spatial and temporal scales and they showed promising uses of these types of models also in practical applications. However, these models are generally applied to scales different from that at which the equation is deduced and validated. For this reason, the models are implemented with effective soil parameters that, in principle, should preserve the water fluxes that would have been estimated assuming the finer resolution scale. In this context, the reduction in spatial discretization becomes a trade-off between complexity and performance of the model. The aim of the present contribution is to assess the performance of Parflow-CLM implemented at different spatial scales. A virtual experiment based on data available for the Neckar catchment (Germany) is used as reference at 100x100m resolution. Different upscaling rules for the soil hydraulic parameters are used for coarsening the model up to 1x1km. The analysis is carried out based on different model output e.g., river discharge, evapotranspiration, soil moisture and groundwater recharge. The effects of soil variability, correlation length and spatial distribution over the water flow direction on the simulation results are discussed. Further researches aim to quantify the related uncertainty in model output and the possibility to fill in the model structure inadequacy with data assimilation techniques.

Reversible and Irreversible Behavior of Glass-forming Materials from the Standpoint of Hierarchical Dynamical Facilitation

NASA Astrophysics Data System (ADS)

Keys, Aaron

2013-03-01

Using molecular simulation and coarse-grained lattice models, we study the dynamics of glass-forming liquids above and below the glass transition temperature. In the supercooled regime, we study the structure, statistics, and dynamics of excitations responsible for structural relaxation for several atomistic models of glass-formers. Excitations (or soft spots) are detected in terms of persistent particle displacements. At supercooled conditions, we find that excitations are associated with correlated particle motions that are sparse and localized, and the statistics and dynamics of these excitations are facilitated and hierarchical. Excitations at one point in space facilitate the birth and death of excitations at neighboring locations, and space-time excitation structures are microcosms of heterogeneous dynamics at larger scales. Excitation-energy scales grow logarithmically with the characteristic size of the excitation, giving structural-relaxation times that can be predicted quantitatively from dynamics at short time scales. We demonstrate that these same physical principles govern the dynamics of glass-forming systems driven out-of-equilibrium by time-dependent protocols. For a system cooled and re-heated through the glass transition, non-equilibrium response functions, such as heat capacities, are notably asymmetric in time, and the response to melting a glass depends markedly on the cooling protocol by which the glass was formed. We introduce a quantitative description of this behavior based on the East model, with parameters determined from reversible transport data, that agrees well with irreversible differential scanning calorimetry. We find that the observed hysteresis and asymmetric response is a signature of an underlying dynamical transition between equilibrium melts with no trivial spatial correlations and non-equilibrium glasses with correlation lengths that are both large and dependent upon the rate at which the glass is prepared. The correlation length corresponds to the size of amorphous domains bounded by excitations that remain frozen on the observation time scale, thus forming stripes when viewed in space and time. We elucidate properties of the striped phase and show that glasses of this type, traditionally prepared through cooling, can be considered a finite-size realization of the inactive phase formed by the s-ensemble in the space-time thermodynamic limit.

Microtubule Dynamics Scale with Cell Size to Set Spindle Length and Assembly Timing.

PubMed

Lacroix, Benjamin; Letort, Gaëlle; Pitayu, Laras; Sallé, Jérémy; Stefanutti, Marine; Maton, Gilliane; Ladouceur, Anne-Marie; Canman, Julie C; Maddox, Paul S; Maddox, Amy S; Minc, Nicolas; Nédélec, François; Dumont, Julien

2018-05-21

Successive cell divisions during embryonic cleavage create increasingly smaller cells, so intracellular structures must adapt accordingly. Mitotic spindle size correlates with cell size, but the mechanisms for this scaling remain unclear. Using live cell imaging, we analyzed spindle scaling during embryo cleavage in the nematode Caenorhabditis elegans and sea urchin Paracentrotus lividus. We reveal a common scaling mechanism, where the growth rate of spindle microtubules scales with cell volume, which explains spindle shortening. Spindle assembly timing is, however, constant throughout successive divisions. Analyses in silico suggest that controlling the microtubule growth rate is sufficient to scale spindle length and maintain a constant assembly timing. We tested our in silico predictions to demonstrate that modulating cell volume or microtubule growth rate in vivo induces a proportional spindle size change. Our results suggest that scalability of the microtubule growth rate when cell size varies adapts spindle length to cell volume. Copyright © 2018 Elsevier Inc. All rights reserved.

Multi-Length Scale-Enriched Continuum-Level Material Model for Kevlar (registered trademark)-Fiber-Reinforced Polymer-Matrix Composites

DTIC Science & Technology

2013-03-01

of coarser-scale materials and structures containing Kevlar fibers (e.g., yarns, fabrics, plies, lamina, and laminates ). Journal of Materials...Multi-Length Scale-Enriched Continuum-Level Material Model for Kevlar -Fiber-Reinforced Polymer-Matrix Composites M. Grujicic, B. Pandurangan, J.S...extensive set of molecular-level computational analyses regarding the role of various microstructural/morphological defects on the Kevlar fiber

Noah-MP-Crop: Introducing dynamic crop growth in the Noah-MP land surface model

NASA Astrophysics Data System (ADS)

Liu, Xing; Chen, Fei; Barlage, Michael; Zhou, Guangsheng; Niyogi, Dev

2016-12-01

Croplands are important in land-atmosphere interactions and in the modification of local and regional weather and climate; however, they are poorly represented in the current version of the coupled Weather Research and Forecasting/Noah with multiparameterization (Noah-MP) land surface modeling system. This study introduced dynamic corn (Zea mays) and soybean (Glycine max) growth simulations and field management (e.g., planting date) into Noah-MP and evaluated the enhanced model (Noah-MP-Crop) at field scales using crop biomass data sets, surface heat fluxes, and soil moisture observations. Compared to the generic dynamic vegetation and prescribed-leaf area index (LAI)-driven methods in Noah-MP, the Noah-MP-Crop showed improved performance in simulating leaf area index (LAI) and crop biomass. This model is able to capture the seasonal and annual variability of LAI and to differentiate corn and soybean in peak values of LAI as well as the length of growing seasons. Improved simulations of crop phenology in Noah-MP-Crop led to better surface heat flux simulations, especially in the early period of growing season where current Noah-MP significantly overestimated LAI. The addition of crop yields as model outputs expand the application of Noah-MP-Crop to regional agriculture studies. There are limitations in the use of current growing degree days (GDD) criteria to predict growth stages, and it is necessary to develop a new method that combines GDD with other environmental factors, to more accurately define crop growth stages. The capability introduced in Noah-MP allows further crop-related studies and development.

Evaporative cooling over the Tibetan Plateau induced by vegetation growth.

PubMed

Shen, Miaogen; Piao, Shilong; Jeong, Su-Jong; Zhou, Liming; Zeng, Zhenzhong; Ciais, Philippe; Chen, Deliang; Huang, Mengtian; Jin, Chun-Sil; Li, Laurent Z X; Li, Yue; Myneni, Ranga B; Yang, Kun; Zhang, Gengxin; Zhang, Yangjian; Yao, Tandong

2015-07-28

In the Arctic, climate warming enhances vegetation activity by extending the length of the growing season and intensifying maximum rates of productivity. In turn, increased vegetation productivity reduces albedo, which causes a positive feedback on temperature. Over the Tibetan Plateau (TP), regional vegetation greening has also been observed in response to recent warming. Here, we show that in contrast to arctic regions, increased growing season vegetation activity over the TP may have attenuated surface warming. This negative feedback on growing season vegetation temperature is attributed to enhanced evapotranspiration (ET). The extra energy available at the surface, which results from lower albedo, is efficiently dissipated by evaporative cooling. The net effect is a decrease in daily maximum temperature and the diurnal temperature range, which is supported by statistical analyses of in situ observations and by decomposition of the surface energy budget. A daytime cooling effect from increased vegetation activity is also modeled from a set of regional weather research and forecasting (WRF) mesoscale model simulations, but with a magnitude smaller than observed, likely because the WRF model simulates a weaker ET enhancement. Our results suggest that actions to restore native grasslands in degraded areas, roughly one-third of the plateau, will both facilitate a sustainable ecological development in this region and have local climate cobenefits. More accurate simulations of the biophysical coupling between the land surface and the atmosphere are needed to help understand regional climate change over the TP, and possible larger scale feedbacks between climate in the TP and the Asian monsoon system.

Evaporative cooling over the Tibetan Plateau induced by vegetation growth

PubMed Central

Shen, Miaogen; Piao, Shilong; Jeong, Su-Jong; Zhou, Liming; Zeng, Zhenzhong; Ciais, Philippe; Chen, Deliang; Huang, Mengtian; Jin, Chun-Sil; Li, Laurent Z. X.; Li, Yue; Myneni, Ranga B.; Yang, Kun; Zhang, Gengxin; Zhang, Yangjian; Yao, Tandong

2015-01-01

In the Arctic, climate warming enhances vegetation activity by extending the length of the growing season and intensifying maximum rates of productivity. In turn, increased vegetation productivity reduces albedo, which causes a positive feedback on temperature. Over the Tibetan Plateau (TP), regional vegetation greening has also been observed in response to recent warming. Here, we show that in contrast to arctic regions, increased growing season vegetation activity over the TP may have attenuated surface warming. This negative feedback on growing season vegetation temperature is attributed to enhanced evapotranspiration (ET). The extra energy available at the surface, which results from lower albedo, is efficiently dissipated by evaporative cooling. The net effect is a decrease in daily maximum temperature and the diurnal temperature range, which is supported by statistical analyses of in situ observations and by decomposition of the surface energy budget. A daytime cooling effect from increased vegetation activity is also modeled from a set of regional weather research and forecasting (WRF) mesoscale model simulations, but with a magnitude smaller than observed, likely because the WRF model simulates a weaker ET enhancement. Our results suggest that actions to restore native grasslands in degraded areas, roughly one-third of the plateau, will both facilitate a sustainable ecological development in this region and have local climate cobenefits. More accurate simulations of the biophysical coupling between the land surface and the atmosphere are needed to help understand regional climate change over the TP, and possible larger scale feedbacks between climate in the TP and the Asian monsoon system. PMID:26170316

Underscreening in concentrated electrolytes.

PubMed

Lee, Alpha A; Perez-Martinez, Carla S; Smith, Alexander M; Perkin, Susan

2017-07-01

Screening of a surface charge by an electrolyte and the resulting interaction energy between charged objects is of fundamental importance in scenarios from bio-molecular interactions to energy storage. The conventional wisdom is that the interaction energy decays exponentially with object separation and the decay length is a decreasing function of ion concentration; the interaction is thus negligible in a concentrated electrolyte. Contrary to this conventional wisdom, we have shown by surface force measurements that the decay length is an increasing function of ion concentration and Bjerrum length for concentrated electrolytes. In this paper we report surface force measurements to test directly the scaling of the screening length with Bjerrum length. Furthermore, we identify a relationship between the concentration dependence of this screening length and empirical measurements of activity coefficient and differential capacitance. The dependence of the screening length on the ion concentration and the Bjerrum length can be explained by a simple scaling conjecture based on the physical intuition that solvent molecules, rather than ions, are charge carriers in a concentrated electrolyte.

Scaling and functional morphology in strigiform hind limbs

PubMed Central

Madan, Meena A.; Rayfield, Emily J.; Bright, Jen A.

2017-01-01

Strigiformes are an order of raptorial birds consisting exclusively of owls: the Tytonidae (barn owls) and the Strigidae (true owls), united by a suite of adaptations aiding a keen predatory lifestyle, including robust hind limb elements modified for grip strength. To assess variation in hind limb morphology, we analysed how the dimensions of the major hind limb elements in subfossil and modern species scaled with body mass. Comparing hind limb element length, midshaft width, and robusticity index (RI: ratio of midshaft width to maximum length) to body mass revealed that femoral and tibiotarsal width scale with isometry, whilst length scales with negative allometry, and close to elastic similarity in the tibiotarsus. In contrast, tarsometatarsus width shows strong positive allometry with body mass, whilst length shows strong negative allometry. Furthermore, the tarsometatarsi RI scales allometrically to mass0.028, whilst a weak relationship exists in femora (mass0.004) and tibiotarsi (mass0.004). Our results suggest that tarsometatarsi play a more substantial functional role than tibiotarsi and femora. Given the scaling relationship between tarsometatarsal width and robusticity to body mass, it may be possible to infer the body mass of prehistoric owls by analysing tarsometatarsi, an element that is frequently preserved in the fossil record of owls. PMID:28327549

Advancing multiscale structural mapping of the brain through fluorescence imaging and analysis across length scales

PubMed Central

Hogstrom, L. J.; Guo, S. M.; Murugadoss, K.; Bathe, M.

2016-01-01

Brain function emerges from hierarchical neuronal structure that spans orders of magnitude in length scale, from the nanometre-scale organization of synaptic proteins to the macroscopic wiring of neuronal circuits. Because the synaptic electrochemical signal transmission that drives brain function ultimately relies on the organization of neuronal circuits, understanding brain function requires an understanding of the principles that determine hierarchical neuronal structure in living or intact organisms. Recent advances in fluorescence imaging now enable quantitative characterization of neuronal structure across length scales, ranging from single-molecule localization using super-resolution imaging to whole-brain imaging using light-sheet microscopy on cleared samples. These tools, together with correlative electron microscopy and magnetic resonance imaging at the nanoscopic and macroscopic scales, respectively, now facilitate our ability to probe brain structure across its full range of length scales with cellular and molecular specificity. As these imaging datasets become increasingly accessible to researchers, novel statistical and computational frameworks will play an increasing role in efforts to relate hierarchical brain structure to its function. In this perspective, we discuss several prominent experimental advances that are ushering in a new era of quantitative fluorescence-based imaging in neuroscience along with novel computational and statistical strategies that are helping to distil our understanding of complex brain structure. PMID:26855758

Sheaths: A Comparison of Magnetospheric, ICME, and Heliospheric Sheaths

NASA Technical Reports Server (NTRS)

Sibeck, D. G.; Richardson, J. D.; Liu, W.

2007-01-01

When a supersonic flow encounters an obstacles, shocks form to divert the flow around the obstacle. The region between the shock and the obstacle is the sheath, where the supersonic flow is compressed, heated, decelerated, and deflected. Supersonic flows, obstacles, and thus sheaths are observed on many scales throughout the Universe. We compare three examples seen in the heliosphere, illustrating the interaction of the solar wind with obstacles of three very different scales lengths. Magnetosheaths form behind planetary bow shocks on scales ranging from tens to 100 planetary radii. ICME sheath form behind shocks driven by solar disturbances on scale lengths of a few to tens of AU. The heliosheath forms behind the termination shock due to the obstacle presented by the interstellar medium on scale lengths of tens to a hundred AU. Despite this range in scales some common features have been observed. Magnetic holes, possibly due to mirror mode waves, have been observed in all three of these sheaths. Plasma depletion layers are observed in planetary and ICME sheaths. Other features observed in some sheaths are wave activity (ion cyclotron, plasma), energetic particles, transmission of Alfven waves/shocks, tangential discontinuities turbulence behind quasi-parallel shocks, standing slow mode waves, and reconnection on the obstacle boundary. We compare these sheath regions, discussing similarities and differences and how these may relate to the scale lengths of these regions.

Integrating multi-scale data to create a virtual physiological mouse heart.

PubMed

Land, Sander; Niederer, Steven A; Louch, William E; Sejersted, Ole M; Smith, Nicolas P

2013-04-06

While the virtual physiological human (VPH) project has made great advances in human modelling, many of the tools and insights developed as part of this initiative are also applicable for facilitating mechanistic understanding of the physiology of a range of other species. This process, in turn, has the potential to provide human relevant insights via a different scientific path. Specifically, the increasing use of mice in experimental research, not yet fully complemented by a similar increase in computational modelling, is currently missing an important opportunity for using and interpreting this growing body of experimental data to improve our understanding of cardiac function. This overview describes our work to address this issue by creating a virtual physiological mouse model of the heart. We describe the similarities between human- and mouse-focused modelling, including the reuse of VPH tools, and the development of methods for investigating parameter sensitivity that are applicable across species. We show how previous results using this approach have already provided important biological insights, and how these can also be used to advance VPH heart models. Finally, we show an example application of this approach to test competing multi-scale hypotheses by investigating variations in length-dependent properties of cardiac muscle.

Integrating multi-scale data to create a virtual physiological mouse heart

PubMed Central

Land, Sander; Niederer, Steven A.; Louch, William E.; Sejersted, Ole M.; Smith, Nicolas P.

2013-01-01

While the virtual physiological human (VPH) project has made great advances in human modelling, many of the tools and insights developed as part of this initiative are also applicable for facilitating mechanistic understanding of the physiology of a range of other species. This process, in turn, has the potential to provide human relevant insights via a different scientific path. Specifically, the increasing use of mice in experimental research, not yet fully complemented by a similar increase in computational modelling, is currently missing an important opportunity for using and interpreting this growing body of experimental data to improve our understanding of cardiac function. This overview describes our work to address this issue by creating a virtual physiological mouse model of the heart. We describe the similarities between human- and mouse-focused modelling, including the reuse of VPH tools, and the development of methods for investigating parameter sensitivity that are applicable across species. We show how previous results using this approach have already provided important biological insights, and how these can also be used to advance VPH heart models. Finally, we show an example application of this approach to test competing multi-scale hypotheses by investigating variations in length-dependent properties of cardiac muscle. PMID:24427525

Controlled mechanical buckling for origami-inspired construction of 3D microstructures in advanced materials.

PubMed

Yan, Zheng; Zhang, Fan; Wang, Jiechen; Liu, Fei; Guo, Xuelin; Nan, Kewang; Lin, Qing; Gao, Mingye; Xiao, Dongqing; Shi, Yan; Qiu, Yitao; Luan, Haiwen; Kim, Jung Hwan; Wang, Yiqi; Luo, Hongying; Han, Mengdi; Huang, Yonggang; Zhang, Yihui; Rogers, John A

2016-04-25

Origami is a topic of rapidly growing interest in both the scientific and engineering research communities due to its promising potential in a broad range of applications. Previous assembly approaches of origami structures at the micro/nanoscale are constrained by the applicable classes of materials, topologies and/or capability of control over the transformation. Here, we introduce an approach that exploits controlled mechanical buckling for autonomic origami assembly of 3D structures across material classes from soft polymers to brittle inorganic semiconductors, and length scales from nanometers to centimeters. This approach relies on a spatial variation of thickness in the initial 2D structures as an effective strategy to produce engineered folding creases during the compressive buckling process. The elastic nature of the assembly scheme enables active, deterministic control over intermediate states in the 2D to 3D transformation in a continuous and reversible manner. Demonstrations include a broad set of 3D structures formed through unidirectional, bidirectional, and even hierarchical folding, with examples ranging from half cylindrical columns and fish scales, to cubic boxes, pyramids, starfish, paper fans, skew tooth structures, and to amusing system-level examples of soccer balls, model houses, cars, and multi-floor textured buildings.

Scaling of average weighted shortest path and average receiving time on weighted expanded Koch networks

NASA Astrophysics Data System (ADS)

Wu, Zikai; Hou, Baoyu; Zhang, Hongjuan; Jin, Feng

2014-04-01

Deterministic network models have been attractive media for discussing dynamical processes' dependence on network structural features. On the other hand, the heterogeneity of weights affect dynamical processes taking place on networks. In this paper, we present a family of weighted expanded Koch networks based on Koch networks. They originate from a r-polygon, and each node of current generation produces m r-polygons including the node and whose weighted edges are scaled by factor w in subsequent evolutionary step. We derive closed-form expressions for average weighted shortest path length (AWSP). In large network, AWSP stays bounded with network order growing (0 < w < 1). Then, we focus on a special random walks and trapping issue on the networks. In more detail, we calculate exactly the average receiving time (ART). ART exhibits a sub-linear dependence on network order (0 < w < 1), which implies that nontrivial weighted expanded Koch networks are more efficient than un-weighted expanded Koch networks in receiving information. Besides, efficiency of receiving information at hub nodes is also dependent on parameters m and r. These findings may pave the way for controlling information transportation on general weighted networks.

Mercury bioaccumulation increases with latitude in a coastal marine fish (Atlantic silverside, Menidia menidia)

PubMed Central

Baumann, Zofia; Mason, Robert P.; Conover, David O.; Balcom, Prentiss; Chen, Celia Y.; Buckman, Kate L.; Fisher, Nicholas S.; Baumann, Hannes

2016-01-01

Human exposure to the neurotoxic methylmercury (MeHg) occurs primarily via the consumption of marine fish, but the processes underlying large-scale spatial variations in fish MeHg concentrations [MeHg], which influence human exposure, are not sufficiently understood. We used the Atlantic silverside (Menidia menidia), an extensively studied model species and important forage fish, to examine latitudinal patterns in total Hg [Hg] and [MeHg]. Both [Hg] and [MeHg] significantly increased with latitude (0.014 and 0.048 μg MeHg g−1 dw per degree of latitude in juveniles and adults, respectively). Four known latitudinal trends in silverside traits help explain these patterns: latitudinal increase in MeHg assimilation efficiency, latitudinal decrease in MeHg efflux, latitudinal increase in weight loss due to longer and more severe winters, and latitudinal increase in food consumption as an adaptation to decreasing length of the growing season. Given the absence of a latitudinal pattern in particulate MeHg, a diet proxy for zooplanktivorous fish, we conclude that large-scale spatial variation in growth is the primary control of Hg bioaccumulation in this and potentially other fish species. PMID:28701819

Trends in laser micromachining

NASA Astrophysics Data System (ADS)

Gaebler, Frank; van Nunen, Joris; Held, Andrew

2016-03-01

Laser Micromachining is well established in industry. Depending on the application lasers with pulse length from μseconds to femtoseconds and wavelengths from 1064nm and its harmonics up to 5μm or 10.6μm are used. Ultrafast laser machining using pulses with pico or femtosecond duration pulses is gaining traction, as it offers very precise processing of materials with low thermal impact. Large-scale industrial ultrafast laser applications show that the market can be divided into various sub segments. One set of applications demand low power around 10W, compact footprint and are extremely sensitive to the laser price whilst still demanding 10ps or shorter laser pulses. A second set of applications are very power hungry and only become economically feasible for large scale deployments at power levels in the 100+W class. There is also a growing demand for applications requiring fs-laser pulses. In our presentation we would like to describe these sub segments by using selected applications from the automotive and electronics industry e.g. drilling of gas/diesel injection nozzles, dicing of LED substrates. We close the presentation with an outlook to micromachining applications e.g. glass cutting and foil processing with unique new CO lasers emitting 5μm laser wavelength.

Dynamics of hot random quantum spin chains: from anyons to Heisenberg spins

NASA Astrophysics Data System (ADS)

Parameswaran, Siddharth; Potter, Andrew; Vasseur, Romain

2015-03-01

We argue that the dynamics of the random-bond Heisenberg spin chain are ergodic at infinite temperature, in contrast to the many-body localized behavior seen in its random-field counterpart. First, we show that excited-state real-space renormalization group (RSRG-X) techniques suffer from a fatal breakdown of perturbation theory due to the proliferation of large effective spins that grow without bound. We repair this problem by deforming the SU (2) symmetry of the Heisenberg chain to its `anyonic' version, SU(2)k , where the growth of effective spins is truncated at spin S = k / 2 . This enables us to construct a self-consistent RSRG-X scheme that is particularly simple at infinite temperature. Solving the flow equations, we compute the excited-state entanglement and show that it crosses over from volume-law to logarithmic scaling at a length scale ξk ~eαk3 . This reveals that (a) anyon chains have random-singlet-like excited states for any finite k; and (b) ergodicity is restored in the Heisenberg limit k --> ∞ . We acknowledge support from the Quantum Materials program of LBNL (RV), the Gordon and Betty Moore Foundation (ACP), and UC Irvine startup funds (SAP).

Structural Ceramic Nanocomposites: A Review of Properties and Powders’ Synthesis Methods

PubMed Central

Palmero, Paola

2015-01-01

Ceramic nanocomposites are attracting growing interest, thanks to new processing methods enabling these materials to go from the research laboratory scale to the commercial level. Today, many different types of nanocomposite structures are proposed in the literature; however, to fully exploit their exceptional properties, a deep understanding of the materials’ behavior across length scales is necessary. In fact, knowing how the nanoscale structure influences the bulk properties enables the design of increasingly performing composite materials. A further key point is the ability of tailoring the desired nanostructured features in the sintered composites, a challenging issue requiring a careful control of all stages of manufacturing, from powder synthesis to sintering. This review is divided into four parts. In the first, classification and general issues of nanostructured ceramics are reported. The second provides basic structure–property relations, highlighting the grain-size dependence of the materials properties. The third describes the role of nanocrystalline second-phases on the mechanical properties of ordinary grain sized ceramics. Finally, the fourth part revises the mainly used synthesis routes to produce nanocomposite ceramic powders, underlining when possible the critical role of the synthesis method on the control of microstructure and properties of the sintered ceramics. PMID:28347029

Global Phenological Response to Climate Change in Crop Areas using Satellite Remote Sensing of Vegetation, Humidity and Temperature over 26 years

NASA Astrophysics Data System (ADS)

Brown, M. E.; de Beurs, K. M.

2012-12-01

The recent increase in food prices has revealed that climate, combined with an expanding population and a widespread change in diet, may result in an end to an era of predictable abundance of global cereal crops. The objective of this paper is to estimate changes of agriculturally-relevant growing season parameters, including the start of the season, length of the growing period and the position of the height or peak of the season, in the primary regions with rainfed agriculture during the past 26 years. Our analysis found that globally, 27% of cereal crop areas have experienced changes in the length of the growing season since 1981, the majority of which had seasons that were at least 2.3 days per year longer on average. We also found both negative and positive trends in the start of season globally, with different effects of changing temperature and humidity being isolated depending on the country and region. We investigated the correlation between the peak timing of the growing season and agricultural production statistics for rain fed agriculture. We found that two thirds of the countries investigated had at least 25% of pixels with crop production that behaved differently than expected from the null hypothesis of no correlation. The results show that variations in the peak of the growing season have a strong effect on global food production in these countries. We show that northern hemisphere countries and states appear to have improved model fit when using phenological models based on humidity while southern hemisphere countries and states have improved model fit by phenological models based on accumulated growing degree days, showing the impact of climate variability during the past two and a half decades.

Modelling spatial distribution of Patagonian toothfish through life-stages and sex and its implications for the fishery on the Kerguelen Plateau

NASA Astrophysics Data System (ADS)

Péron, Clara; Welsford, Dirk C.; Ziegler, Philippe; Lamb, Timothy D.; Gasco, Nicolas; Chazeau, Charlotte; Sinègre, Romain; Duhamel, Guy

2016-02-01

Size and sex specific habitat preferences are common in animal populations and can have important implications for sound spatial management of harvested species. Patagonian toothfish (Dissostichus eleginoides) is a commercially exploited fish species characterised by its longevity (>50 yo) and its extremely broad distribution in depths ranging from 10 m to 2500 m on most of the Plateaux, banks and seamounts of the Southern Ocean. As many bentho-pelagic fish species, Patagonian toothfish exhibits sexual dimorphism and ontogenetic habitat shift towards deeper waters as they grow. In this study, we modelled the spatial structure of Patagonian toothfish population (median total length and sex composition) in a data-rich area, the Kerguelen Plateau (Southern Indian Ocean), to better understand the ecological drivers of their distributional patterns and inform current and future fishery management strategies. We applied spatially-explicit statistical models to quantify and predict the effects of the complex topography of the Kerguelen Plateau in structuring the spatial distribution of Patagonian toothfish total length and sex ratio, while controlling for gear selectivity and season. Model predictions showed that juvenile toothfish live in shallow regions (shelf and banks) and move downward progressively up to 600 m while they grow. Between 600 m and 1200 m, the downward movement stops and fish settle at their preferred depths. While in this depth range, fish are ∼75 cm long and most vulnerable to fisheries. As they approach maturity large fish move downward to deep-sea habitats (from 1200 m to >2300 m) and head towards the spawning grounds on the western side of the plateau and around Skiff Bank. Importantly, the sex ratio was not evenly distributed across the Plateau; prediction maps revealed a higher proportion of females in the South whereas a strong male-bias sex ratio (70%) occurred in the North-West. Large-scale prediction maps derived from our models assisted in developing hypotheses regarding ecological drivers of Patagonian toothfish habitat-use and movement across different life stages and sex. Such hypotheses are crucial to inform management strategies of this multijurisdictional fishery (France and Australia) at the spatial and temporal scales over which natural processes and fishery extend.

A comprehensive allometric analysis of 2nd digit length to 4th digit length in humans.

PubMed

Lolli, Lorenzo; Batterham, Alan M; Kratochvíl, Lukáš; Flegr, Jaroslav; Weston, Kathryn L; Atkinson, Greg

2017-06-28

It has been widely reported that men have a lower ratio of the 2nd and 4th human finger lengths (2D : 4D). Size-scaling ratios, however, have the seldom-appreciated potential for providing biased estimates. Using an information-theoretic approach, we compared 12 candidate models, with different assumptions and error structures, for scaling untransformed 2D to 4D lengths from 154 men and 262 women. In each hand, the two-parameter power function and the straight line with intercept models, both with normal, homoscedastic error, were superior to the other models and essentially equivalent to each other for normalizing 2D to 4D lengths. The conventional 2D : 4D ratio biased relative 2D length low for the generally bigger hands of men, and vice versa for women, thereby leading to an artefactual indication that mean relative 2D length is lower in men than women. Conversely, use of the more appropriate allometric or linear regression models revealed that mean relative 2D length was, in fact, greater in men than women. We conclude that 2D does not vary in direct proportion to 4D for both men and women, rendering the use of the simple 2D : 4D ratio inappropriate for size-scaling purposes and intergroup comparisons. © 2017 The Author(s).

Temporal and spatial variability of frost-free seasons in the Great Lakes region of the United States

Treesearch

Lejiang Yu; Shiyuan Zhong; Xindi Bian; Warren E. Heilman; Jeffrey A. Andresen

2014-01-01

The frequency and timing of frost events and the length of the growing season are critical limiting factors in many human and natural ecosystems. This study investigates the temporal and spatial variability of the date of last spring frost (LSF), the date of first fall frost (FFF), and the length of the frost-free season (FFS) in the Great Lakes region of the United...

Diffusion and scaling during early embryonic pattern formation.

PubMed

Gregor, Thomas; Bialek, William; de Ruyter van Steveninck, Rob R; Tank, David W; Wieschaus, Eric F

2005-12-20

Development of spatial patterns in multicellular organisms depends on gradients in the concentration of signaling molecules that control gene expression. In the Drosophila embryo, Bicoid (Bcd) morphogen controls cell fate along 70% of the anteroposterior axis but is translated from mRNA localized at the anterior pole. Gradients of Bcd and other morphogens are thought to arise through diffusion, but this basic assumption has never been rigorously tested in living embryos. Furthermore, because diffusion sets a relationship between length and time scales, it is hard to see how patterns of gene expression established by diffusion would scale proportionately as egg size changes during evolution. Here, we show that the motion of inert molecules through the embryo is well described by the diffusion equation on the relevant length and time scales, and that effective diffusion constants are essentially the same in closely related dipteran species with embryos of very different size. Nonetheless, patterns of gene expression in these different species scale with egg length. We show that this scaling can be traced back to scaling of the Bcd gradient itself. Our results, together with constraints imposed by the time scales of development, suggest that the mechanism for scaling is a species-specific adaptation of the Bcd lifetime.

Permeability from complex conductivity: an evaluation of polarization magnitude versus relaxation time based geophysical length scales

NASA Astrophysics Data System (ADS)

Slater, L. D.; Robinson, J.; Weller, A.; Keating, K.; Robinson, T.; Parker, B. L.

2017-12-01

Geophysical length scales determined from complex conductivity (CC) measurements can be used to estimate permeability k when the electrical formation factor F describing the ratio between tortuosity and porosity is known. Two geophysical length scales have been proposed: [1] the imaginary conductivity σ" normalized by the specific polarizability cp; [2] the time constant τ multiplied by a diffusion coefficient D+. The parameters cp and D+ account for the control of fluid chemistry and/or varying minerology on the geophysical length scale. We evaluated the predictive capability of two recently presented CC permeability models: [1] an empirical formulation based on σ"; [2] a mechanistic formulation based on τ;. The performance of the CC models was evaluated against measured permeability; this performance was also compared against that of well-established k estimation equations that use geometric length scales to represent the pore scale properties controlling fluid flow. Both CC models predict permeability within one order of magnitude for a database of 58 sandstone samples, with the exception of those samples characterized by high pore volume normalized surface area Spor and more complex mineralogy including significant dolomite. Variations in cp and D+ likely contribute to the poor performance of the models for these high Spor samples. The ultimate value of such geophysical models for permeability prediction lies in their application to field scale geophysical datasets. Two observations favor the implementation of the σ" based model over the τ based model for field-scale estimation: [1] the limited range of variation in cp relative to D+; [2] σ" is readily measured using field geophysical instrumentation (at a single frequency) whereas τ requires broadband spectral measurements that are extremely challenging and time consuming to accurately measure in the field. However, the need for a reliable estimate of F remains a major obstacle to the field-scale implementation of either of the CC permeability models for k estimation.

Mid-tropospheric Spectral Length-scale Analysis of Many Constituents from Aircraft, Satellite and Model Results During the 2013 SENEX Field Study.

NASA Astrophysics Data System (ADS)

McKeen, S. A.; Angevine, W. M.; Ahmadov, R.; Frost, G. J.; Kim, S. W.; Cui, Y.; McDonald, B.; Trainer, M.; Holloway, J. S.; Ryerson, T. B.; Peischl, J.; Gambacorta, A.; Barnet, C. D.; Smith, N.; Pierce, R. B.

2016-12-01

This study presents preliminary comparisons of satellite, aircraft, and model variance spectra for meteorological, thermodynamic and gas-phase species collected during the 2013 Southeastern Nexus Air Quality Experiment (SENEX). Fourier analysis of 8 constituents collected at 1 Hz by the NOAA W-P3 aircraft in the 25 to 200 km length-scale range exhibit properties consistent with previous scale dependence studies: when spectra are averaged over several 500 mb flight legs, very linear dependence is found on log-log plots of spectral density versus inverse length-scale. Derived slopes for wind speed, temperature, H2O, CO, CO2, CH4, NOy and O3 all fall within ±30% and close to the slope of -5/3 predicted from dimensional scaling theory of isotropic turbulence. Qualitative differences are seen when a similar analysis, without quality control, is applied to a preliminary set of NUCAPS satellite retrievals over the continental U.S. during SENEX. While 500mb water vapor and column integrated water show slopes close to the -5/3 value in the 200 to 1000 km length-scale range, other quantities show significantly shallower slopes, suggesting the need for rigorous quality control. Results from WRF-Chem regional air quality model simulations at 500mb show the model is unable to account for variance on length-scales less than 6ΔX, where ΔX is the model horizontal resolution (12km). Comparisons with satellite data in the 200 to 1000km range show slopes consistent with the -5/3 power law for species such as CO, CH4 and CO2 that do not undergo reinitialization, suggesting potential for future application.

Electron Profile Stiffness and Critical Gradient Length Studies in the Alcator C-Mod Tokamak

NASA Astrophysics Data System (ADS)

Houshmandyar, Saeid; Hatch, David R.; Liao, Kenneth T.; Zhao, Bingzhe; Phillips, Perry E.; Rowan, William L.; Cao, Norman; Ernst, Darin R.; Rice, John E.

2017-10-01

Electron temperature profile stiffness was investigated at Alcator C-Mod L-mode discharges. Electrons were heated by ion cyclotron range of frequencies (ICRF) through minority heating. The intent of the heating mechanism was to vary the heat flux and simultaneously, gradually change the local gradient. The electron temperature gradient scale length (LTe- 1 = | ∇Te |/Te) was accurately measured through a novel technique, using the high-resolution radiometer ECE diagnostic. The TRANSP power balance analysis (Q/QGB) and the measured scale length (a/LTe) result in critical scale length measurements at all major radius locations. These measurements suggest that the profiles are already at the critical values. Furthermore, the dependence of the stiffness on plasma rotation and magnetic shear will be discussed. In order to understand the underlying mechanism of turbulence for these discharges, simulations using the gyrokinetic code, GENE, were carried out. For linear runs at electron scales, it was found that the largest growth rates are very sensitive to a/LTe variation, which suggests the presence of ETG modes, while the sensitivity studies in the ion scales indicate ITG/TEM modes. Supported by USDoE awards DE-FG03-96ER54373 and DE-FC02-99ER54512.

The correlation function for density perturbations in an expanding universe. I - Linear theory

NASA Technical Reports Server (NTRS)

Mcclelland, J.; Silk, J.

1977-01-01

The evolution of the two-point correlation function for adiabatic density perturbations in the early universe is studied. Analytical solutions are obtained for the evolution of linearized spherically symmetric adiabatic density perturbations and the two-point correlation function for these perturbations in the radiation-dominated portion of the early universe. The results are then extended to the regime after decoupling. It is found that: (1) adiabatic spherically symmetric perturbations comparable in scale with the maximum Jeans length would survive the radiation-dominated regime; (2) irregular fluctuations are smoothed out up to the scale of the maximum Jeans length in the radiation era, but regular fluctuations might survive on smaller scales; (3) in general, the only surviving structures for irregularly shaped adiabatic density perturbations of arbitrary but finite scale in the radiation regime are the size of or larger than the maximum Jeans length in that regime; (4) infinite plane waves with a wavelength smaller than the maximum Jeans length but larger than the critical dissipative damping scale could survive the radiation regime; and (5) black holes would also survive the radiation regime and might accrete sufficient mass after decoupling to nucleate the formation of galaxies.

A likely-universal model of fracture density and scaling justified by both data and theory. Consequences for crustal hydro-mechanics

NASA Astrophysics Data System (ADS)

Davy, P.; Darcel, C.; Le Goc, R.; Bour, O.

2011-12-01

We discuss the parameters that control fracture density on the Earth. We argue that most of fracture systems are spatially organized according to two main regimes. The smallest fractures can grow independently of each others, defining a "dilute" regime controlled by nuclei occurrence rate and individual fracture growth law. Above a certain length, fractures stop growing due to mechanical interactions between fractures. For this "dense" regime, we derive the fracture density distribution by acknowledging that, statistically, fractures do not cross a larger one. This very crude rule, which expresses the inhibiting role of large fractures against smaller ones but not the reverse, actually appears be a very strong control on the eventual fracture density distribution since it results in a self-similar distribution whose exponents and density term are fully determined by the fractal dimension D and a dimensionless parameter γ that encompasses the details of fracture correlations and orientations. The range of values for D and γ appears to be extremely limited, which makes this model quite universal. This theory is supported by quantitative data on either fault or joint networks. The transition between the dilute and dense regimes occurs at about a few tenths of kilometers for faults systems, and a few meters for joints. This remarkable difference between both processes is likely due to a large-scale control (localization) of the fracture growth for faulting that does not exist for jointing. Finally, we discuss the consequences of this model on both flow and mechanical properties. In the dense regime, networks appears to be very close to a critical state.

Simulating phenological shifts in French temperate forests under two climatic change scenarios and four driving global circulation models

NASA Astrophysics Data System (ADS)

Lebourgeois, François; Pierrat, Jean-Claude; Perez, Vincent; Piedallu, Christian; Cecchini, Sébastien; Ulrich, Erwin

2010-09-01

After modeling the large-scale climate response patterns of leaf unfolding, leaf coloring and growing season length of evergreen and deciduous French temperate trees, we predicted the effects of eight future climate scenarios on phenological events. We used the ground observations from 103 temperate forests (10 species and 3,708 trees) from the French Renecofor Network and for the period 1997-2006. We applied RandomForest algorithms to predict phenological events from climatic and ecological variables. With the resulting models, we drew maps of phenological events throughout France under present climate and under two climatic change scenarios (A2, B2) and four global circulation models (HadCM3, CGCM2, CSIRO2 and PCM). We compared current observations and predicted values for the periods 2041-2070 and 2071-2100. On average, spring development of oaks precedes that of beech, which precedes that of conifers. Annual cycles in budburst and leaf coloring are highly correlated with January, March-April and October-November weather conditions through temperature, global solar radiation or potential evapotranspiration depending on species. At the end of the twenty-first century, each model predicts earlier budburst (mean: 7 days) and later leaf coloring (mean: 13 days) leading to an average increase in the growing season of about 20 days (for oaks and beech stands). The A2-HadCM3 hypothesis leads to an increase of up to 30 days in many areas. As a consequence of higher predicted warming during autumn than during winter or spring, shifts in leaf coloring dates appear greater than trends in leaf unfolding. At a regional scale, highly differing climatic response patterns were observed.

Study of zonal large scale wave structure (LSWS) and equatorial scintillation with low-latitude GRBR network over Southeast Asia and African sectors

NASA Astrophysics Data System (ADS)

Ram Sudarsanam, Tulasi; Yamamoto, Mamoru; Gurubaran, Subramanian; Tsunoda, Roland

2012-07-01

The day-to-day variability of Equatorial Spread-F, when and where the equatorial plasma bubbles (EPBs) may initiate, were the challenging problems that puzzling the space weather researchers for several decades. The zonal large scale wave structure (LSWS) at the base of F-layer is the earliest manifestation of seed perturbation for the evolution of EPBs by R-T instability processes, hence, found to play deterministic role on the development of ESF. Yet, only a little is known about LSWS with lack of sufficient observations, primarily because of inability to detect the LSWS with the currently existing instruments except with steerable incoherent scatter radar such as ALTAIR radar. This situation, however, was recently changed with launch of C/NOFS in a unique low-inclination (13 ^{o}) orbit. With the availability of CERTO beacon transmissions from C/NOFS in a near equatorial orbit, it is now possible to detect and resolve the roles by LSWS on a regular basis. A ground based low-latitude GNU Radio Beacon Receiver (GRBR) Network has been recently established that provide coverage of Southeast Asia, Pacific and African low-latitude regions. Recent observations suggest that these wave structures with zonal wave lengths varying between 200 and 800 km can be earliest detected even before E-region sunset and found to grow significantly after sunset, probably, aided by the polarization electric fields. Further, these zonal structures consistently found to be aligned with field lines for several hundreds of kilometers and EPBs were found to grow from the westward walls of upwellings. The characteristic differences on the strength of LSWS between the Asian and African longitudes were identified during the recent increasing solar activity and discussed in this paper.

Simulating phenological shifts in French temperate forests under two climatic change scenarios and four driving global circulation models.

PubMed

Lebourgeois, François; Pierrat, Jean-Claude; Perez, Vincent; Piedallu, Christian; Cecchini, Sébastien; Ulrich, Erwin

2010-09-01

After modeling the large-scale climate response patterns of leaf unfolding, leaf coloring and growing season length of evergreen and deciduous French temperate trees, we predicted the effects of eight future climate scenarios on phenological events. We used the ground observations from 103 temperate forests (10 species and 3,708 trees) from the French Renecofor Network and for the period 1997-2006. We applied RandomForest algorithms to predict phenological events from climatic and ecological variables. With the resulting models, we drew maps of phenological events throughout France under present climate and under two climatic change scenarios (A2, B2) and four global circulation models (HadCM3, CGCM2, CSIRO2 and PCM). We compared current observations and predicted values for the periods 2041-2070 and 2071-2100. On average, spring development of oaks precedes that of beech, which precedes that of conifers. Annual cycles in budburst and leaf coloring are highly correlated with January, March-April and October-November weather conditions through temperature, global solar radiation or potential evapotranspiration depending on species. At the end of the twenty-first century, each model predicts earlier budburst (mean: 7 days) and later leaf coloring (mean: 13 days) leading to an average increase in the growing season of about 20 days (for oaks and beech stands). The A2-HadCM3 hypothesis leads to an increase of up to 30 days in many areas. As a consequence of higher predicted warming during autumn than during winter or spring, shifts in leaf coloring dates appear greater than trends in leaf unfolding. At a regional scale, highly differing climatic response patterns were observed.

Global Modeling of Spur Formation in Spiral Galaxies

NASA Astrophysics Data System (ADS)

Shetty, Rahul; Ostriker, Eve C.

2006-08-01

We investigate the formation of substructure in spiral galaxies using global MHD simulations, including gas self-gravity. Local modeling by Kim & Ostriker previously showed that self-gravity and magnetic fields cause rapid growth of overdensities in spiral arms; differential compression of gas flowing through the arms then results in the formation of sheared structures in the interarms. These sheared structures resemble features described as spurs or feathers in optical and IR observations of many spiral galaxies. Global modeling extends previous local models by including the full effects of curvilinear coordinates, a realistic log-spiral perturbation, self-gravitational contribution from five radial wavelengths of the spiral shock, and variation of density and epicyclic frequency with radius. We show that with realistic Toomre Q-values self-gravity and galactic differential rotation produce filamentary gaseous structures with kiloparsec-scale separations, regardless of the strength-or even presence-of a stellar spiral potential. However, a sufficiently strong spiral potential is required to produce true spurs, consisting of interarm structures emerging from gas concentrations in the main spiral arms. In models where Q is initially constant, filaments due to interarm self-gravity grow mainly in the outer regions, whereas true arm spurs grow only in the inner regions. For models with Q~R, outer regions are intrinsically more stable, so background interarm filaments do not grow, but arm spurs can develop if the spiral potential is strong. Unlike independently growing background filaments, the orientation of arm spurs depends on galactic location. Inside corotation, spurs emanate outward, on the convex side of the arm; outside corotation, spurs grow inward, on the concave side of the arm. Based on orientation and the relation to arm clumps, it is possible to distinguish true spurs that originate as instabilities in the arms from independently growing background filaments. We measure spur spacings of ~3-5 times the Jeans length in the arm and arm clump masses of ~107 Msolar. Finally, we have also studied models without self-gravity, finding that magnetic fields suppress a purely hydrodynamic instability recently proposed by Wada & Koda as a means of growing interarm spurs and feathers. Our models also suggest that magnetic fields are important in preserving grand-design spiral structure when gas in the arms fragments via self-gravity into GMCs.

A multi-resolution analysis of lidar-DTMs to identify geomorphic processes from characteristic topographic length scales

NASA Astrophysics Data System (ADS)

Sangireddy, H.; Passalacqua, P.; Stark, C. P.

2013-12-01

Characteristic length scales are often present in topography, and they reflect the driving geomorphic processes. The wide availability of high resolution lidar Digital Terrain Models (DTMs) allows us to measure such characteristic scales, but new methods of topographic analysis are needed in order to do so. Here, we explore how transitions in probability distributions (pdfs) of topographic variables such as (log(area/slope)), defined as topoindex by Beven and Kirkby[1979], can be measured by Multi-Resolution Analysis (MRA) of lidar DTMs [Stark and Stark, 2001; Sangireddy et al.,2012] and used to infer dominant geomorphic processes such as non-linear diffusion and critical shear. We show this correlation between dominant geomorphic processes to characteristic length scales by comparing results from a landscape evolution model to natural landscapes. The landscape evolution model MARSSIM Howard[1994] includes components for modeling rock weathering, mass wasting by non-linear creep, detachment-limited channel erosion, and bedload sediment transport. We use MARSSIM to simulate steady state landscapes for a range of hillslope diffusivity and critical shear stresses. Using the MRA approach, we estimate modal values and inter-quartile ranges of slope, curvature, and topoindex as a function of resolution. We also construct pdfs at each resolution and identify and extract characteristic scale breaks. Following the approach of Tucker et al.,[2001], we measure the average length to channel from ridges, within the GeoNet framework developed by Passalacqua et al.,[2010] and compute pdfs for hillslope lengths at each scale defined in the MRA. We compare the hillslope diffusivity used in MARSSIM against inter-quartile ranges of topoindex and hillslope length scales, and observe power law relationships between the compared variables for simulated landscapes at steady state. We plot similar measures for natural landscapes and are able to qualitatively infer the dominant geomorphic processes. Also, we explore the variability in hillslope length scales as a function of hillslope diffusivity coefficients and critical shear stress in natural landscapes and show that we can infer signatures of dominant geomorphic processes by analyzing characteristic topographic length scales present in topography. References: Beven, K. and Kirkby, M. J.: A physically based variable contributing area model of basin hydrology, Hydrol. Sci. Bull., 24, 43-69, 1979 Howard, A. D. (1994). A detachment-limited model of drainage basin evolution.Water resources research, 30(7), 2261-2285. Passalacqua, P., Do Trung, T., Foufoula Georgiou, E., Sapiro, G., & Dietrich, W. E. (2010). A geometric framework for channel network extraction from lidar: Nonlinear diffusion and geodesic paths. Journal of Geophysical. Research: Earth Surface (2003-2012), 115(F1). Sangireddy, H., Passalacqua, P., Stark, C.P.(2012). Multi-resolution estimation of lidar-DTM surface flow metrics to identify characteristic topographic length scales, EP13C-0859: AGU Fall meeting 2012. Stark, C. P., & Stark, G. J. (2001). A channelization model of landscape evolution. American Journal of Science, 301(4-5), 486-512. Tucker, G. E., Catani, F., Rinaldo, A., & Bras, R. L. (2001). Statistical analysis of drainage density from digital terrain data. Geomorphology, 36(3), 187-202.

Pores-scale hydrodynamics in a progressively bio-clogged three-dimensional porous medium: 3D particle tracking experiments and stochastic transport modelling

NASA Astrophysics Data System (ADS)

Morales, V. L.; Carrel, M.; Dentz, M.; Derlon, N.; Morgenroth, E.; Holzner, M.

2017-12-01

Biofilms are ubiquitous bacterial communities growing in various porous media including soils, trickling and sand filters and are relevant for applications such as the degradation of pollutants for bioremediation, waste water or drinking water production purposes. By their development, biofilms dynamically change the structure of porous media, increasing the heterogeneity of the pore network and the non-Fickian or anomalous dispersion. In this work, we use an experimental approach to investigate the influence of biofilm growth on pore scale hydrodynamics and transport processes and propose a correlated continuous time random walk model capturing these observations. We perform three-dimensional particle tracking velocimetry at four different time points from 0 to 48 hours of biofilm growth. The biofilm growth notably impacts pore-scale hydrodynamics, as shown by strong increase of the average velocity and in tailing of Lagrangian velocity probability density functions. Additionally, the spatial correlation length of the flow increases substantially. This points at the formation of preferential flow pathways and stagnation zones, which ultimately leads to an increase of anomalous transport in the porous media considered, characterized by non-Fickian scaling of mean-squared displacements and non-Gaussian distributions of the displacement probability density functions. A gamma distribution provides a remarkable approximation of the bulk and the high tail of the Lagrangian pore-scale velocity magnitude, indicating a transition from a parallel pore arrangement towards a more serial one. Finally, a correlated continuous time random walk based on a stochastic relation velocity model accurately reproduces the observations and could be used to predict transport beyond the time scales accessible to the experiment.

Growing season temperature and precipitation variability and extremes in the U.S. Corn Belt from 1981 to 2012

NASA Astrophysics Data System (ADS)

Dai, S.; Shulski, M.

2013-12-01

Climate warming and changes in rainfall patterns and increases in extreme events are resulting in higher risks of crop failures. A greater sense of urgency has been induced to understand the impacts of past climate on crop production in the U.S. As one of the most predominant sources of feed grains, corn is also the main source of U.S. ethanol. In the U.S. Corn Belt, region-scale evaluation on temperature and precipitation variability and extremes during the growing season is not well-documented yet. This study is part of the USDA-funded project 'Useful to Usable: Transforming climate variability and change information for cereal crop producers'. The overall goal of our work is to study the characteristics of average growing season conditions and changes in growing season temperature- and precipitation-based indices that are closely correlated with corn grain yield in the U.S. Corn Belt. The research area is the twelve major Corn Belt states, including IL, IN, IA, KS, MI, MN, MO, NE, OH, SD, ND, and WI. Climate data during 1981-2010 from 132 meteorological stations (elevation ranges from 122 m to 1,202 m) are used in this study, including daily minimum, maximum, and mean temperature, and daily precipitation. From 1981 to 2012, beginning date (BD), ending date (ED), and growing season length (GSL) in the climatological corn growing season are studied. Especially, during the agronomic corn growing season, from Apr to Oct, temperature- and precipitation-based indices are analyzed. The temperature-based indices include: number of days with daily mean temperature below 10°C, number of days with daily mean temperature above 30°C, the sum of growing degree days (GDD) between 10°C to 30°C (GDD10,30, growth range for corn), the sum of growing degree days above 30°C (GDD30+, exposure to harmful warming for corn), the sum of growing degree days between 0°C and 44°C (GDD0,44, survival range limits for corn), the sum of growing degree days between 5°C and 35°C (GDD5,35, growth range limits for corn), and the sum of growing degree days between 20°C and 22°C (GDD20,22, optimal growth range for corn). And the precipitation-based indices include: cumulative precipitation, consecutive dry days, and number of extreme precipitation events in June. As to the decadal trend analysis in climatic factors, Sen's Nonparametric Estimator of Slope and the nonparametric Mann-Kendall test are used. In the U.S. Corn Belt, annual mean Tavg ranges from 5.7°C to 14.7°C, and annual cumulative precipitation ranges from 396 mm to 1,203 mm. According to the decadal trend of annual mean Tavg and annual cumulative precipitation, 30 stations (45%) demonstrate a warm and dry trend, and 28 stations demonstrate a warm and wet trend. In monthly scale, Jun mean Tmin presents the most significantly increasing trend, and no significant decreasing or zero trend is detected from 1981 to 2012. During the climatological corn growing season, BD ranges from 76 to 128 DOY, ED ranges from 276 to 316 DOY, and GSL ranges from 150 to 242 days. From 1981 to 2012, BD is significantly advanced at the rate of 1 to 8 DOY per decade, ED is significantly delayed at the rate of 1 to 5 per decade, and GSL is significantly prolonged at the rate of 1 to 11 days per decade.

Detection of submicron scale cracks and other surface anomalies using positron emission tomography

DOEpatents

Cowan, Thomas E.; Howell, Richard H.; Colmenares, Carlos A.

2004-02-17

Detection of submicron scale cracks and other mechanical and chemical surface anomalies using PET. This surface technique has sufficient sensitivity to detect single voids or pits of sub-millimeter size and single cracks or fissures of millimeter size; and single cracks or fissures of millimeter-scale length, micrometer-scale depth, and nanometer-scale length, micrometer-scale depth, and nanometer-scale width. This technique can also be applied to detect surface regions of differing chemical reactivity. It may be utilized in a scanning or survey mode to simultaneously detect such mechanical or chemical features over large interior or exterior surface areas of parts as large as about 50 cm in diameter. The technique involves exposing a surface to short-lived radioactive gas for a time period, removing the excess gas to leave a partial monolayer, determining the location and shape of the cracks, voids, porous regions, etc., and calculating the width, depth, and length thereof. Detection of 0.01 mm deep cracks using a 3 mm detector resolution has been accomplished using this technique.

Turning the tide: effects of river inflow and tidal amplitude on sandy estuaries in laboratory landscape experiments

NASA Astrophysics Data System (ADS)

Kleinhans, Maarten; Braat, Lisanne; Leuven, Jasper; Baar, Anne; van der Vegt, Maarten; van Maarseveen, Marcel; Markies, Henk; Roosendaal, Chris; van Eijk, Arjan

2016-04-01

Many estuaries formed over the Holocene through a combination of fluvial and coastal influxes, but how estuary planform shape and size depend on tides, wave climate and river influxes remains unclear. Here we use a novel tidal flume setup of 20 m length by 3 m width, the Metronome (http://www.uu.nl/metronome), to create estuaries and explore a parameter space for the simple initial condition of a straight river in sandy substrate. Tidal currents capable of transporting sediment in both the ebb and flood phase because they are caused by periodic tilting of the flume rather than the classic method of water level fluctuation. Particle imaging velocimetry and a 1D shallow flow model demonstrate that this principle leads to similar sediment mobility as in nature. Ten landscape experiments recorded by timelapse overhead imaging and AGIsoft DEMs of the final bed elevation show that absence of river inflow leads to short tidal basins whereas even a minor discharge leads to long convergent estuaries. Estuary width and length as well as morphological time scale over thousands of tidal cycles strongly depend on tidal current amplitude. Paddle-generated waves subdue the ebb delta causing stronger tidal currents in the basin. Bar length-width ratios in estuaries are slightly larger to those in braided rivers in experiments and nature. Mutually evasive ebb- and flood-dominated channels are ubiquitous and appear to be formed by an instability mechanism with growing bar and bifurcation asymmetry. Future experiments will include mud flats and live vegetation.

Hydrodynamic representation of the Klein-Gordon-Einstein equations in the weak field limit: General formalism and perturbations analysis

NASA Astrophysics Data System (ADS)

Suárez, Abril; Chavanis, Pierre-Henri

2015-07-01

Using a generalization of the Madelung transformation, we derive the hydrodynamic representation of the Klein-Gordon-Einstein equations in the weak field limit. We consider a complex self-interacting scalar field with a λ |φ |4 potential. We study the evolution of the spatially homogeneous background in the fluid representation and derive the linearized equations describing the evolution of small perturbations in a static and in an expanding Universe. We compare the results with simplified models in which the gravitational potential is introduced by hand in the Klein-Gordon equation, and assumed to satisfy a (generalized) Poisson equation. Nonrelativistic hydrodynamic equations based on the Schrödinger-Poisson equations or on the Gross-Pitaevskii-Poisson equations are recovered in the limit c →+∞. We study the evolution of the perturbations in the matter era using the nonrelativistic limit of our formalism. Perturbations whose wavelength is below the Jeans length oscillate in time while perturbations whose wavelength is above the Jeans length grow linearly with the scale factor as in the cold dark matter model. The growth of perturbations in the scalar field model is substantially faster than in the cold dark matter model. When the wavelength of the perturbations approaches the cosmological horizon (Hubble length), a relativistic treatment is mandatory. In that case, we find that relativistic effects attenuate or even prevent the growth of perturbations. This paper exposes the general formalism and provides illustrations in simple cases. Other applications of our formalism will be considered in companion papers.

Review of mixing length estimates and effects of toroidicity in a fluid model for turbulent transport in tokamaks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weiland, J., E-mail: elfjw@chalmers.se

2016-05-15

Basic aspects of turbulent transport in toroidal magnetized plasmas are discussed. In particular the fluid closure has strong effects on zonal flows which are needed to create an absorbing boundary for long wave lengths and also to obtain the Dimits nonlinear upshift. The fluid resonance in the energy equation is found to be instrumental for generating the L–H transition, the spin-up of poloidal rotation in internal transport barriers, as well as the nonlinear Dimits upshift. The difference between the linearly fastest growing mode number and the corresponding longer nonlinear correlation length is also addressed. It is found that the Kadomtsevmore » mixing length result is consistent with the non-Markovian diagonal limit of the transport at the nonlinearly obtained correlation length.« less

Generalized theory of semiflexible polymers.

PubMed

Wiggins, Paul A; Nelson, Philip C

2006-03-01

DNA bending on length scales shorter than a persistence length plays an integral role in the translation of genetic information from DNA to cellular function. Quantitative experimental studies of these biological systems have led to a renewed interest in the polymer mechanics relevant for describing the conformational free energy of DNA bending induced by protein-DNA complexes. Recent experimental results from DNA cyclization studies have cast doubt on the applicability of the canonical semiflexible polymer theory, the wormlike chain (WLC) model, to DNA bending on biologically relevant length scales. This paper develops a theory of the chain statistics of a class of generalized semiflexible polymer models. Our focus is on the theoretical development of these models and the calculation of experimental observables. To illustrate our methods, we focus on a specific, illustrative model of DNA bending. We show that the WLC model generically describes the long-length-scale chain statistics of semiflexible polymers, as predicted by renormalization group arguments. In particular, we show that either the WLC or our present model adequately describes force-extension, solution scattering, and long-contour-length cyclization experiments, regardless of the details of DNA bend elasticity. In contrast, experiments sensitive to short-length-scale chain behavior can in principle reveal dramatic departures from the linear elastic behavior assumed in the WLC model. We demonstrate this explicitly by showing that our toy model can reproduce the anomalously large short-contour-length cyclization factors recently measured by Cloutier and Widom. Finally, we discuss the applicability of these models to DNA chain statistics in the context of future experiments.

Multiple scales and phases in discrete chains with application to folded proteins

NASA Astrophysics Data System (ADS)

Sinelnikova, A.; Niemi, A. J.; Nilsson, Johan; Ulybyshev, M.

2018-05-01

Chiral heteropolymers such as large globular proteins can simultaneously support multiple length scales. The interplay between the different scales brings about conformational diversity, determines the phase properties of the polymer chain, and governs the structure of the energy landscape. Most importantly, multiple scales produce complex dynamics that enable proteins to sustain live matter. However, at the moment there is incomplete understanding of how to identify and distinguish the various scales that determine the structure and dynamics of a complex protein. Here we address this impending problem. We develop a methodology with the potential to systematically identify different length scales, in the general case of a linear polymer chain. For this we introduce and analyze the properties of an order parameter that can both reveal the presence of different length scales and can also probe the phase structure. We first develop our concepts in the case of chiral homopolymers. We introduce a variant of Kadanoff's block-spin transformation to coarse grain piecewise linear chains, such as the C α backbone of a protein. We derive analytically, and then verify numerically, a number of properties that the order parameter can display, in the case of a chiral polymer chain. In particular, we propose that in the case of a chiral heteropolymer the order parameter can reveal traits of several different phases, contingent on the length scale at which it is scrutinized. We confirm that this is the case with crystallographic protein structures in the Protein Data Bank. Thus our results suggest relations between the scales, the phases, and the complexity of folding pathways.

Fire Hazards from Combustible Ammunition, Methodology Development. Phase I

DTIC Science & Technology

1980-06-01

5.3 Flame Length , Flame Diameter and Mass Burning Rate 37 5.4 Flame Emissive Power 41 5.5 Fire Plume Axial Gas Velocity 41 5.6 Flame Temperature...B.2 Exit Velocity 93 B.3 Rate of Energy Flow 93 B.4 Chamber Characteristics 94 B.5 Flame Length 95 B.6 Flame Lift Angle 95 B.7 Summary 97...Viewing Flame in Test Series 5 17. Flame Length Scaling 18. Scaling Trends for Mass Burning Rate 19. Effective Flame Emissive Power versus Flame

Allometry of sexual size dimorphism in turtles: a comparison of mass and length data.

PubMed

Regis, Koy W; Meik, Jesse M

2017-01-01

The macroevolutionary pattern of Rensch's Rule (positive allometry of sexual size dimorphism) has had mixed support in turtles. Using the largest carapace length dataset and only large-scale body mass dataset assembled for this group, we determine (a) whether turtles conform to Rensch's Rule at the order, suborder, and family levels, and (b) whether inferences regarding allometry of sexual size dimorphism differ based on choice of body size metric used for analyses. We compiled databases of mean body mass and carapace length for males and females for as many populations and species of turtles as possible. We then determined scaling relationships between males and females for average body mass and straight carapace length using traditional and phylogenetic comparative methods. We also used regression analyses to evalutate sex-specific differences in the variance explained by carapace length on body mass. Using traditional (non-phylogenetic) analyses, body mass supports Rensch's Rule, whereas straight carapace length supports isometry. Using phylogenetic independent contrasts, both body mass and straight carapace length support Rensch's Rule with strong congruence between metrics. At the family level, support for Rensch's Rule is more frequent when mass is used and in phylogenetic comparative analyses. Turtles do not differ in slopes of sex-specific mass-to-length regressions and more variance in body size within each sex is explained by mass than by carapace length. Turtles display Rensch's Rule overall and within families of Cryptodires, but not within Pleurodire families. Mass and length are strongly congruent with respect to Rensch's Rule across turtles, and discrepancies are observed mostly at the family level (the level where Rensch's Rule is most often evaluated). At macroevolutionary scales, the purported advantages of length measurements over weight are not supported in turtles.

VizieR Online Data Catalog: CALIFA galaxies observational hints (Ruiz-Lara+, 2017)

NASA Astrophysics Data System (ADS)

Ruiz-Lara, T.; Perez, I.; Florido, E.; Sanchez-Blazquez, P.; Mendez-Abreu, J.; Sanchez-Menguiano, L.; Sanchez, S. F.; Lyubenova, M.; Falcon-Barroso, J.; van de Ven, G.; Marino, R. A.; de Lorenzo-Caceres, A.; Catalan-Torrecilla, C.; Costantin, L.; Bland-Hawthorn, J.; Galbany, L.; Garcia-Benito, R.; Husemann, B.; Kehrig, C.; Marquez, I.; Mast, D.; Walcher, C. J.; Zibetti, S.; Ziegle, B.; Califa Team

2017-05-01

Characterisation of the sample of galaxies under analysis in the paper. The sample comprises 214 galaxies from the CALIFA survey. For each galaxy the name, equatorial coordinates, morphological type, presence of a bar, surface brightness profile type, inner disc scale length (kpc), outer disc scale length (kpc), and break radius in units of the inner disc scale length are given. Columns (1), (2), (3), and (4) from the CALIFA general sample characterisation (Walcher et al., 2014A&A...569A...1W). Columns (5), (6), (7), (8), (9), and (10) from the 2D decomposition performed in Mendez-Abreu et al. (2017, Cat. J/A+A/598/A32). (1 data file).

Toward power scaling in an acetylene mid-infrared hollow-core optical fiber gas laser: effects of pressure, fiber length, and pump power

NASA Astrophysics Data System (ADS)

Weerasinghe, H. W. Kushan; Dadashzadeh, Neda; Thirugnanasambandam, Manasadevi P.; Debord, Benoît.; Chafer, Matthieu; Gérôme, Frédéric; Benabid, Fetah; Corwin, Kristan L.; Washburn, Brian R.

2018-02-01

The effect of gas pressure, fiber length, and optical pump power on an acetylene mid-infrared hollow-core optical fiber gas laser (HOFGLAS) is experimentally determined in order to scale the laser to higher powers. The absorbed optical power and threshold power are measured for different pressures providing an optimum pressure for a given fiber length. We observe a linear dependence of both absorbed pump energy and lasing threshold for the acetylene HOFGLAS, while maintaining a good mode quality with an M-squared of 1.15. The threshold and mode behavior are encouraging for scaling to higher pressures and pump powers.

Soil Texture Often Exerts a Stronger Influence Than Precipitation on Mesoscale Soil Moisture Patterns

NASA Astrophysics Data System (ADS)

Dong, Jingnuo; Ochsner, Tyson E.

2018-03-01

Soil moisture patterns are commonly thought to be dominated by land surface characteristics, such as soil texture, at small scales and by atmospheric processes, such as precipitation, at larger scales. However, a growing body of evidence challenges this conceptual model. We investigated the structural similarity and spatial correlations between mesoscale (˜1-100 km) soil moisture patterns and land surface and atmospheric factors along a 150 km transect using 4 km multisensor precipitation data and a cosmic-ray neutron rover, with a 400 m diameter footprint. The rover was used to measure soil moisture along the transect 18 times over 13 months. Spatial structures of soil moisture, soil texture (sand content), and antecedent precipitation index (API) were characterized using autocorrelation functions and fitted with exponential models. Relative importance of land surface characteristics and atmospheric processes were compared using correlation coefficients (r) between soil moisture and sand content or API. The correlation lengths of soil moisture, sand content, and API ranged from 12-32 km, 13-20 km, and 14-45 km, respectively. Soil moisture was more strongly correlated with sand content (r = -0.536 to -0.704) than with API for all but one date. Thus, land surface characteristics exhibit coherent spatial patterns at scales up to 20 km, and those patterns often exert a stronger influence than do precipitation patterns on mesoscale spatial patterns of soil moisture.

Effects of Telecoupling on Global Vegetation Dynamics

NASA Astrophysics Data System (ADS)

Viña, A.; Liu, J.

2016-12-01

With the ever increasing trend in telecoupling processes, such as international trade, all countries around the world are becoming more interdependent. However, the effects of this growing interdependence on vegetation (e.g., shifts in the geographic extent and distribution) remain unknown even though vegetation dynamics are crucially important for food production, carbon sequestration, provision of other ecosystem services, and biodiversity conservation. In this study we evaluate the effects of international trade on the spatio-temporal trajectories of vegetation at national and global scales, using vegetation index imagery collected over more than three decades by the Advanced Very High Resolution Radiometer (AVHRR) satellite sensor series together with concurrent national and international data on international trade (and its associated movement of people, goods, services and information). The spatio-temporal trajectories of vegetation are obtained using the scale of fluctuation technique, which is based on the decomposition of the AVHRR image time series to obtain information on its spatial dependence structure over time. Similar to the correlation length, the scale of fluctuation corresponds to the range over which fluctuations in the vegetation index are spatially correlated. Results indicate that global vegetation has changed drastically over the last three decades. These changes are not uniform across space, with hotspots in active trading countries. This study not only has direct implications for understanding global vegetation dynamics, but also sheds important insights on the complexity of human-nature interactions across telecoupled systems.

Linking marine and freshwater growth in western Alaska Chinook salmon Oncorhynchus tshawytscha

USGS Publications Warehouse

Ruggerone, G.T.; Nielsen, J.L.; Agler, B.A.

2009-01-01

The hypothesis that growth in Pacific salmon Oncorhynchus spp. is dependent on previous growth was tested using annual scale growth measurements of wild Chinook salmon Oncorhynchus tshawytscha returning to the Yukon and Kuskokwim Rivers, Alaska, from 1964 to 2004. First-year marine growth in individual O. tshawytscha was significantly correlated with growth in fresh water. Furthermore, growth during each of 3 or 4 years at sea was related to growth during the previous year. The magnitude of the growth response to the previous year's growth was greater when mean year-class growth during the previous year was relatively low. Length (eye to tail fork, LETF) of adult O. tshawytscha was correlated with cumulative scale growth after the first year at sea. Adult LETF was also weakly correlated with scale growth that occurred during freshwater residence 4 to 5 years earlier, indicating the importance of growth in fresh water. Positive growth response to previous growth in O. tshawytscha was probably related to piscivorous diet and foraging benefits of large body size. Faster growth among O. tshawytscha year classes that initially grew slowly may reflect high mortality in slow growing fish and subsequent compensatory growth in survivors. Oncorhynchus tshawytscha in this study exhibited complex growth patterns showing a positive relationship with previous growth and a possible compensatory response to environmental factors affecting growth of the age class.

Infrared length scale and extrapolations for the no-core shell model

DOE PAGES

Wendt, K. A.; Forssén, C.; Papenbrock, T.; ...

2015-06-03

In this paper, we precisely determine the infrared (IR) length scale of the no-core shell model (NCSM). In the NCSM, the A-body Hilbert space is truncated by the total energy, and the IR length can be determined by equating the intrinsic kinetic energy of A nucleons in the NCSM space to that of A nucleons in a 3(A-1)-dimensional hyper-radial well with a Dirichlet boundary condition for the hyper radius. We demonstrate that this procedure indeed yields a very precise IR length by performing large-scale NCSM calculations for 6Li. We apply our result and perform accurate IR extrapolations for bound statesmore » of 4He, 6He, 6Li, and 7Li. Finally, we also attempt to extrapolate NCSM results for 10B and 16O with bare interactions from chiral effective field theory over tens of MeV.« less

Combined single crystal polarized XAFS and XRD at high pressure: probing the interplay between lattice distortions and electronic order at multiple length scales in high T c cuprates

DOE PAGES

Fabbris, G.; Hücker, M.; Gu, G. D.; ...

2016-07-14

Some of the most exotic material properties derive from electronic states with short correlation length (~10-500 Å), suggesting that the local structural symmetry may play a relevant role in their behavior. In this study, we discuss the combined use of polarized x-ray absorption fine structure and x-ray diffraction at high pressure as a powerful method to tune and probe structural and electronic orders at multiple length scales. Besides addressing some of the technical challenges associated with such experiments, we illustrate this approach with results obtained in the cuprate La 1.875Ba 0.125CuO 4, in which the response of electronic order tomore » pressure can only be understood by probing the structure at the relevant length scales.« less

Nano-scaled graphene platelets with a high length-to-width aspect ratio

DOEpatents

Zhamu, Aruna; Guo, Jiusheng; Jang, Bor Z.

2010-09-07

This invention provides a nano-scaled graphene platelet (NGP) having a thickness no greater than 100 nm and a length-to-width ratio no less than 3 (preferably greater than 10). The NGP with a high length-to-width ratio can be prepared by using a method comprising (a) intercalating a carbon fiber or graphite fiber with an intercalate to form an intercalated fiber; (b) exfoliating the intercalated fiber to obtain an exfoliated fiber comprising graphene sheets or flakes; and (c) separating the graphene sheets or flakes to obtain nano-scaled graphene platelets. The invention also provides a nanocomposite material comprising an NGP with a high length-to-width ratio. Such a nanocomposite can become electrically conductive with a small weight fraction of NGPs. Conductive composites are particularly useful for shielding of sensitive electronic equipment against electromagnetic interference (EMI) or radio frequency interference (RFI), and for electrostatic charge dissipation.

On the properties of a bundle of flexible actin filaments in an optical trap

NASA Astrophysics Data System (ADS)

Perilli, Alessia; Pierleoni, Carlo; Ciccotti, Giovanni; Ryckaert, Jean-Paul

2016-06-01

We establish the statistical mechanics framework for a bundle of Nf living and uncrosslinked actin filaments in a supercritical solution of free monomers pressing against a mobile wall. The filaments are anchored normally to a fixed planar surface at one of their ends and, because of their limited flexibility, they grow almost parallel to each other. Their growing ends hit a moving obstacle, depicted as a second planar wall, parallel to the previous one and subjected to a harmonic compressive force. The force constant is denoted as the trap strength while the distance between the two walls as the trap length to make contact with the experimental optical trap apparatus. For an ideal solution of reactive filaments and free monomers at fixed free monomer chemical potential μ1, we obtain the general expression for the grand potential from which we derive averages and distributions of relevant physical quantities, namely, the obstacle position, the bundle polymerization force, and the number of filaments in direct contact with the wall. The grafted living filaments are modeled as discrete Wormlike chains, with F-actin persistence length ℓp, subject to discrete contour length variations ±d (the monomer size) to model single monomer (de)polymerization steps. Rigid filaments (ℓp = ∞), either isolated or in bundles, all provide average values of the stalling force in agreement with Hill's predictions Fs H = N f k B T ln ( ρ 1 / ρ 1 c) / d , independent of the average trap length. Here ρ1 is the density of free monomers in the solution and ρ1c its critical value at which the filament does not grow nor shrink in the absence of external forces. Flexible filaments (ℓp < ∞) instead, for values of the trap strength suitable to prevent their lateral escape, provide an average bundle force and an average trap length slightly larger than the corresponding rigid cases (few percents). Still the stalling force remains nearly independent on the average trap length, but results from the product of two strongly L-dependent contributions: the fraction of touching filaments ∝ (" separators=" < L >O . T .) 2 and the single filament buckling force ∝ (" separators=" < L >O . T .) - 2 .

Optimal defense theory explains deviations from latitudinal herbivory defense hypothesis.

PubMed

Kooyers, Nicholas J; Blackman, Benjamin K; Holeski, Liza M

2017-04-01

The latitudinal herbivory defense hypothesis (LHDH) postulates that the prevalence of species interactions, including herbivory, is greater at lower latitudes, leading to selection for increased levels of plant defense. While latitudinal defense clines may be caused by spatial variation in herbivore pressure, optimal defense theory predicts that clines could also be caused by ecogeographic variation in the cost of defense. For instance, allocation of resources to defense may not increase plant fitness when growing seasons are short and plants must reproduce quickly. Here we use a common garden experiment to survey genetic variation for constitutive and induced phenylpropanoid glycoside (PPG) concentrations across 35 Mimulus guttatus populations over a ~13° latitudinal transect. Our sampling regime is unique among studies of the LHDH in that it allows us to disentangle the effects of growing season length from those of latitude, temperature, and elevation. For five of the seven PPGs surveyed, we find associations between latitude and plant defense that are robust to population structure. However, contrary to the LHDH, only two PPGs were found at higher levels in low latitude populations, and total PPG concentrations were higher at higher latitudes. PPG levels are strongly correlated with growing season length, with higher levels of PPGs in plants from areas with longer growing seasons. Further, flowering time is positively correlated with the concentration of nearly all PPGs, suggesting that there may be a strong trade-off between development time and defense production. Our results reveal that ecogeographic patterns in plant defense may reflect variation in the cost of producing defense compounds in addition to variation in herbivore pressure. Thus, the biogeographic pattern predicted by the LHDH may not be accurate because the underlying factors driving variation in defense, in this case, growing season length, are not always associated with latitude in the same manner. Given these results, we conclude that LHDH cannot be interpreted without considering life history, and we recommend that future work on the LHDH move beyond solely testing the core LHDH prediction and place greater emphasis on isolating agents of selection that generate spatial variation in defense and herbivore pressure. © 2017 by the Ecological Society of America.

Multiresolution analysis of characteristic length scales with high-resolution topographic data

NASA Astrophysics Data System (ADS)

Sangireddy, Harish; Stark, Colin P.; Passalacqua, Paola

2017-07-01

Characteristic length scales (CLS) define landscape structure and delimit geomorphic processes. Here we use multiresolution analysis (MRA) to estimate such scales from high-resolution topographic data. MRA employs progressive terrain defocusing, via convolution of the terrain data with Gaussian kernels of increasing standard deviation, and calculation at each smoothing resolution of (i) the probability distributions of curvature and topographic index (defined as the ratio of slope to area in log scale) and (ii) characteristic spatial patterns of divergent and convergent topography identified by analyzing the curvature of the terrain. The MRA is first explored using synthetic 1-D and 2-D signals whose CLS are known. It is then validated against a set of MARSSIM (a landscape evolution model) steady state landscapes whose CLS were tuned by varying hillslope diffusivity and simulated noise amplitude. The known CLS match the scales at which the distributions of topographic index and curvature show scaling breaks, indicating that the MRA can identify CLS in landscapes based on the scaling behavior of topographic attributes. Finally, the MRA is deployed to measure the CLS of five natural landscapes using meter resolution digital terrain model data. CLS are inferred from the scaling breaks of the topographic index and curvature distributions and equated with (i) small-scale roughness features and (ii) the hillslope length scale.

Length scales involved in decoherence of trapped bosons by buffer-gas scattering

NASA Astrophysics Data System (ADS)

Gilz, Lukas; Rico-Pérez, Luis; Anglin, James R.

2014-05-01

We ask and answer a basic question about the length scales involved in quantum decoherence: how far apart in space do two parts of a quantum system have to be before a common quantum environment decoheres them as if they were entirely separate? We frame this question specifically in a cold atom context. How far apart do two populations of bosons have to be before an environment of thermal atoms of a different species ("buffer gas") responds to their two particle numbers separately? An initial guess for this length scale is the thermal coherence length of the buffer gas; we show that a standard Born-Markov treatment partially supports this guess, but predicts only inverse-square saturation of decoherence rates with distance, and not the much more abrupt Gaussian behavior of the buffer gas's first-order coherence. We confirm this Born-Markov result with a more rigorous theory, based on an exact solution of a two-scatterer scattering problem, which also extends the result beyond weak scattering. Finally, however, we show that when interactions within the buffer-gas reservoir are taken into account, an abrupt saturation of the decoherence rate does occur, exponentially on the length scale of the buffer gas's mean free path.

The scaling structure of the global road network

PubMed Central

Giometto, Andrea; Shai, Saray; Bertuzzo, Enrico; Mucha, Peter J.; Rinaldo, Andrea

2017-01-01

Because of increasing global urbanization and its immediate consequences, including changes in patterns of food demand, circulation and land use, the next century will witness a major increase in the extent of paved roads built worldwide. To model the effects of this increase, it is crucial to understand whether possible self-organized patterns are inherent in the global road network structure. Here, we use the largest updated database comprising all major roads on the Earth, together with global urban and cropland inventories, to suggest that road length distributions within croplands are indistinguishable from urban ones, once rescaled to account for the difference in mean road length. Such similarity extends to road length distributions within urban or agricultural domains of a given area. We find two distinct regimes for the scaling of the mean road length with the associated area, holding in general at small and at large values of the latter. In suitably large urban and cropland domains, we find that mean and total road lengths increase linearly with their domain area, differently from earlier suggestions. Scaling regimes suggest that simple and universal mechanisms regulate urban and cropland road expansion at the global scale. As such, our findings bear implications for global road infrastructure growth based on land-use change and for planning policies sustaining urban expansions. PMID:29134071

The scaling structure of the global road network.

PubMed

Strano, Emanuele; Giometto, Andrea; Shai, Saray; Bertuzzo, Enrico; Mucha, Peter J; Rinaldo, Andrea

2017-10-01

Because of increasing global urbanization and its immediate consequences, including changes in patterns of food demand, circulation and land use, the next century will witness a major increase in the extent of paved roads built worldwide. To model the effects of this increase, it is crucial to understand whether possible self-organized patterns are inherent in the global road network structure. Here, we use the largest updated database comprising all major roads on the Earth, together with global urban and cropland inventories, to suggest that road length distributions within croplands are indistinguishable from urban ones, once rescaled to account for the difference in mean road length. Such similarity extends to road length distributions within urban or agricultural domains of a given area. We find two distinct regimes for the scaling of the mean road length with the associated area, holding in general at small and at large values of the latter. In suitably large urban and cropland domains, we find that mean and total road lengths increase linearly with their domain area, differently from earlier suggestions. Scaling regimes suggest that simple and universal mechanisms regulate urban and cropland road expansion at the global scale. As such, our findings bear implications for global road infrastructure growth based on land-use change and for planning policies sustaining urban expansions.

Diffusion-limited mixing by incompressible flows

NASA Astrophysics Data System (ADS)

Miles, Christopher J.; Doering, Charles R.

2018-05-01

Incompressible flows can be effective mixers by appropriately advecting a passive tracer to produce small filamentation length scales. In addition, diffusion is generally perceived as beneficial to mixing due to its ability to homogenize a passive tracer. However we provide numerical evidence that, in cases where advection and diffusion are both actively present, diffusion may produce negative effects by limiting the mixing effectiveness of incompressible optimal flows. This limitation appears to be due to the presence of a limiting length scale given by a generalised Batchelor length (Batchelor 1959 J. Fluid Mech. 5 113–33). This length scale limitation may in turn affect long-term mixing rates. More specifically, we consider local-in-time flow optimisation under energy and enstrophy flow constraints with the objective of maximising the mixing rate. We observe that, for enstrophy-bounded optimal flows, the strength of diffusion may not impact the long-term mixing rate. For energy-constrained optimal flows, however, an increase in the strength of diffusion can decrease the mixing rate. We provide analytical lower bounds on mixing rates and length scales achievable under related constraints (point-wise bounded speed and rate-of-strain) by extending the work of Lin et al (2011 J. Fluid Mech. 675 465–76) and Poon (1996 Commun. PDE 21 521–39).

Can the contralateral limb be used as a control during the growing period in a rodent model?

PubMed

Mustafy, Tanvir; Londono, Irène; Villemure, Isabelle

2018-05-12

The contralateral limb is often used as a control in various clinical, forensic and anthropological studies. However, no studies have been performed to determine if the contra-lateral limb is a suitable control during the bone development period. The aim of this study was to determine the bilateral symmetry of growing rat tibiae in terms of geometric shape, mechanical strength and bone morphological parameters with developmental stages. Left and right tibias of 18 male Sprague-Dawley rats at 4, 8 and 12 weeks of age were scanned with micro-CT for bone-morphometric evaluation and for 3D deviation analysis to quantify the geometric shape variations between left and right tibiae. Overall tibial lengths and curvatures were also measured, and bone mechanical strength was investigated using three-point bending tests. Deviation distributions between bilateral tibiae remained below 0.5 mm for more than 80% of the geometry for all groups. Tibial lengths, longitudinal tibial curvatures, bone-morphometric parameters and mechanical strengths changed significantly during the growing period but kept a strong degree of symmetry between bilateral tibiae. These results suggest that bilateral tibiae can be considered symmetrical in nature and that contralateral limb can be used as a control during the growing period in different experimental scenarios. Copyright © 2018 Elsevier Ltd. All rights reserved.

Multi-window PIV measurements around a breathing manikin

NASA Astrophysics Data System (ADS)

Marr, David

2005-11-01

The presented work includes multi-scale measurements via a stereo article Image Velocimetry (PIV) system to view a pair of two-component windows of dissimilar scale using a varied focal length. These measurements are taken in the breathing zone of an isothermal breathing manikin (from mouth) in an environmental chamber of average office cubicle dimensions without ventilation and are analogous to an oscillatory jet. From these phase-averaged measurements, we can extract information concerning length scales, turbulence quantities and low dimensional information in order to both determine correlation between data at different length scales as well as continuing research in exposure assessment for the indoor environment. In this talk we will present these turbulence quantities and interpret their influence on the breathing zone. While the largest scale is that of the room itself, we find that the relevant spatial scales associated with the breathing zone are much lower in magnitude. In future experiments, we will expand the multi window PIV technique to include PIV window configured to obtain scales of order the cubicle simultaneously with those of the breathing zone. This will aid in our understanding of the combined impact of these multiple scales on occupant exposure in the indoor environment.

Bridging the Gap Between Large-scale Data Sets and Analyses: Semi-automated Methods to Facilitate Length Polymorphism Scoring and Data Analyses.

EPA Science Inventory

Amplified fragment length polymorphism (AFLP) markers can be developed more quickly and at a lower cost than microsatellite and single nucleotide polymorphism markers, which makes them ideal markers for large-scale studies of understudied taxa — such as species at risk. However,...

Temporal length-scale cascade and expansion rate on planar liquid jet instability

NASA Astrophysics Data System (ADS)

Sirignano, William; Zandian, Arash; Hussain, Fazle

2016-11-01

Using the local radius of curvature of the surface and the local transverse dimension of the two-phase (i.e., spray) domain as length scales, we obtained two PDFs over a wide range of length-scales at different times and for different Reynolds and Weber (We) numbers. The PDFs were developed via post-processing of DNS Navier-Stokes results for a 3D planar liquid sheet segment with level-set and Volume-of-Fluid surface tracking, giving better statistical data for the length scales compared to the former methods. The radius PDF shows that, with increasing We , the average radius of curvature decreases, number of small droplets increases, and cascade occurs at a faster rate. In time, the mean of the radius PDF decreases while the rms increases. The other PDF represents the spray expansion in a more realistic and meaningful form, showing that the spray angle is larger at higher We and density-ratios. Both the mean and the rms of the spray-size PDF increase with time. The PDFs also track the transitions between symmetric and anti-symmetric modes.

Entropically Stabilized Colloidal Crystals Hold Entropy in Collective Modes

NASA Astrophysics Data System (ADS)

Antonaglia, James; van Anders, Greg; Glotzer, Sharon

Ordered structures can be stabilized by entropy if the system has more ordered microstates available than disordered ones. However, ``locating'' the entropy in an ordered system is challenging because entropic ordering is necessarily a collective effort emerging from the interactions of large numbers of particles. Yet, we can characterize these crystals using simple traditional tools, because entropically stabilized crystals exhibit collective motion and effective stiffness. For a two-dimensional system of hard hexagons, we calculate the dispersion relations of both vibrational and librational collective modes. We find the librational mode is gapped, and the gap provides an emergent, macroscopic, and density-dependent length scale. We quantify the entropic contribution of each collective mode and find that below this length scale, the dominant entropic contributions are librational, and above this length scale, vibrations dominate. This length scale diverges in the high-density limit, so entropy is found predominantly in libration near dense packing. National Science Foundation Graduate Research Fellowship Program Grant No. DGE 1256260, Advanced Research Computing at the University of Michigan, Ann Arbor, and the Simons Foundation.

Flow field topology of transient mixing driven by buoyancy

NASA Technical Reports Server (NTRS)

Duval, Walter M B.

2004-01-01

Transient mixing driven by buoyancy occurs through the birth of a symmetric Rayleigh-Taylor morphology (RTM) structure for large length scales. Beyond its critical bifurcation the RTM structure exhibits self-similarity and occurs on smaller and smaller length scales. The dynamics of the RTM structure, its nonlinear growth and internal collision, show that its genesis occurs from an explosive bifurcation which leads to the overlap of resonance regions in phase space. This event shows the coexistence of regular and chaotic regions in phase space which is corroborated with the existence of horseshoe maps. A measure of local chaos given by the topological entropy indicates that as the system evolves there is growth of uncertainty. Breakdown of the dissipative RTM structure occurs during the transition from explosive to catastrophic bifurcation; this event gives rise to annihilation of the separatrices which drives overlap of resonance regions. The global bifurcation of explosive and catastrophic events in phase space for the large length scale of the RTM structure serves as a template for which mixing occurs on smaller and smaller length scales. Copyright 2004 American Institute of Physics.

Accurate atomistic potentials and training sets for boron-nitride nanostructures

NASA Astrophysics Data System (ADS)

Tamblyn, Isaac

Boron nitride nanotubes exhibit exceptional structural, mechanical, and thermal properties. They are optically transparent and have high thermal stability, suggesting a wide range of opportunities for structural reinforcement of materials. Modeling can play an important role in determining the optimal approach to integrating nanotubes into a supporting matrix. Developing accurate, atomistic scale models of such nanoscale interfaces embedded within composites is challenging, however, due to the mismatch of length scales involved. Typical nanotube diameters range from 5-50 nm, with a length as large as a micron (i.e. a relevant length-scale for structural reinforcement). Unlike their carbon-based counterparts, well tested and transferable interatomic force fields are not common for BNNT. In light of this, we have developed an extensive training database of BN rich materials, under conditions relevant for BNNT synthesis and composites based on extensive first principles molecular dynamics simulations. Using this data, we have produced an artificial neural network potential capable of reproducing the accuracy of first principles data at significantly reduced computational cost, allowing for accurate simulation at the much larger length scales needed for composite design.

Critical behavior of the order-disorder phase transition in β -brass investigated by x-ray scattering

NASA Astrophysics Data System (ADS)

Madsen, A.; Als-Nielsen, J.; Hallmann, J.; Roth, T.; Lu, W.

2016-07-01

β -brass exhibits an archetypical example of an order-disorder transition with a critical behavior that was previously investigated by neutron scattering. The data were well described by the three-dimensional (3d) Ising model but the relatively crude experimental resolution prevented an in-depth examination of the single-length scaling hypothesis, a cornerstone in the theory of critical phenomena. With the development of synchrotron x-ray experiments, high-resolution data could be recorded and surprisingly it was found that the single-length scaling did not hold in most critical systems, possibly due to strain originating from surface defects and/or impurities. In this paper we demonstrate single-length critical behavior using high-resolution x-ray scattering in β -brass. The investigations confirm that β -brass behaves like a 3d Ising system over a wide range of length scales comprising correlated clusters of millions of atoms. To vary the surface sensitivity, experiments have been performed both in Bragg reflection and Laue transmission geometries but without any substantial differences observed in the scaling and critical behavior.

The carbon charging of pines at the climatic treeline: a global comparison.

PubMed

Hoch, Günter; Körner, Christian

2003-03-01

The carbon charging of pines across the treeline ecotone of three different climatic zones (Mexico 19 degrees N Pinus hartwegii, Swiss Alps 46 degrees N P. cembra and northern Sweden 68 degrees N P. sylvestris) was analyzed, to test whether a low-temperature-driven carbon shortage can explain high-elevation tree limits, and whether the length of the growing season affects the trees' carbon balance. We quantified the concentrations of non-structural carbohydrates (NSC) and lipids (acylglycerols) in all tree organs at three dates during the growing seasons across elevational transects from the upper end of the closed, tall forest (timberline) to the uppermost location where groups of trees > or =3 m in height occur (treeline). Mean ground temperatures during the growing season at the treelines were similar (6.1+/-0.7 degrees C) irrespective of latitude. Across the individual transects, the concentrations of NSC and lipids increased with elevation in all organs. By the end of the growing season, all three species had very similar total mobile carbon (TMC) concentrations at the treeline (ca. 6% TMC in the aboveground dry biomass), suggesting no influence of the length of the growing season on tree carbon charging. At a temperate lowland reference site P. sylvestris reached only ca. 4% TMC in the aboveground dry biomass, with the 2% difference largely explained by higher lipid concentrations of treeline pines. We conclude that carbon availability is unlikely to be the cause of the altitudinal tree limit. It seems rather that low temperatures directly affect sink activity at the treeline, with surplus carbon stored in osmotically inactive compounds.

A rational approach to the use of Prandtl's mixing length model in free turbulent shear flow calculations

NASA Technical Reports Server (NTRS)

Rudy, D. H.; Bushnell, D. M.

1973-01-01

Prandtl's basic mixing length model was used to compute 22 test cases on free turbulent shear flows. The calculations employed appropriate algebraic length scale equations and single values of mixing length constant for planar and axisymmetric flows, respectively. Good agreement with data was obtained except for flows, such as supersonic free shear layers, where large sustained sensitivity changes occur. The inability to predict the more gradual mixing in these flows is tentatively ascribed to the presence of a significant turbulence-induced transverse static pressure gradient which is neglected in conventional solution procedures. Some type of an equation for length scale development was found to be necessary for successful computation of highly nonsimilar flow regions such as jet or wake development from thick wall flows.

Spatiotemporal variations in litter mass and their relationships with climate in temperate grassland: A case study from Xilingol grassland, Inner Mongolia (China)

NASA Astrophysics Data System (ADS)

Ren, Hongrui; Zhang, Bei

2018-02-01

Clarifying spatiotemporal variations of litter mass and their relationships with climate factors will advance our understanding of ecosystem structure and functioning in grasslands. Our objective is to investigate the spatiotemporal variations of litter mass in the growing season and their relationships with precipitation and temperature in the Xilingol grassland using MOD09A1 data. With widely used STI (simple tillage index), we firstly estimated the litter mass of Xilingol grassland in the growing season from 2000 to 2014. Then we investigated the variations of litter mass in the growing season at regional and site scales. We further explored the spatiotemporal relationships between litter mass and precipitation and temperature at both scales. The litter mass increased with increasing mean annual precipitation and decreasing mean annual temperature at regional scale. The variations of litter mass at given sites followed quadratic function curves in the growing season, and litter mass generally attained maximums between August 1 and September 1. Positive spatial relationship was observed between litter mass variations and precipitation, and negative spatial relationship was found between litter mass variations and temperature in the growing season. There was no significant relationship between inter-annual variations of litter mass and precipitation and temperature at given sites. Results illustrate that precipitation and temperature are important drivers in shaping ecosystem functioning as reflected in litter mass at regional scale in the Xilingol grassland. Our findings also suggest the action of distinct mechanism in controlling litter mass variations at regional and sites scales.

Slowly-growing gap-opening planets trigger weaker vortices

NASA Astrophysics Data System (ADS)

Hammer, Michael; Kratter, Kaitlin M.; Lin, Min-Kai

2017-04-01

The presence of a giant planet in a low-viscosity disc can create a gap edge in the disc's radial density profile sharp enough to excite the Rossby wave instability. This instability may evolve into dust-trapping vortices that might explain the 'banana-shaped' features in recently observed asymmetric transition discs with inner cavities. Previous hydrodynamical simulations of planet-induced vortices have neglected the time-scale of hundreds to thousands of orbits to grow a massive planet to Jupiter size. In this work, we study the effect of a giant planet's runaway growth time-scale on the lifetime and characteristics of the resulting vortex. For two different planet masses (1 and 5 Jupiter masses) and two different disc viscosities (α = 3 × 10-4 and 3 × 10-5), we compare the vortices induced by planets with several different growth time-scales between 10 and 4000 planet orbits. In general, we find that slowly-growing planets create significantly weaker vortices with lifetimes and surface densities reduced by more than 50 per cent. For the higher disc viscosity, the longest growth time-scales in our study inhibit vortex formation altogether. Additionally, slowly-growing planets produce vortices that are up to twice as elongated, with azimuthal extents well above 180° in some cases. These unique, elongated vortices likely create a distinct signature in the dust observations that differentiates them from the more concentrated vortices that correspond to planets with faster growth time-scales. Lastly, we find that the low viscosities necessary for vortex formation likely prevent planets from growing quickly enough to trigger the instability in self-consistent models.

The Electrostatic Screening Length in Concentrated Electrolytes Increases with Concentration.

PubMed

Smith, Alexander M; Lee, Alpha A; Perkin, Susan

2016-06-16

According to classical electrolyte theories interactions in dilute (low ion density) electrolytes decay exponentially with distance, with the Debye screening length the characteristic length scale. This decay length decreases monotonically with increasing ion concentration due to effective screening of charges over short distances. Thus, within the Debye model no long-range forces are expected in concentrated electrolytes. Here we reveal, using experimental detection of the interaction between two planar charged surfaces across a wide range of electrolytes, that beyond the dilute (Debye-Hückel) regime the screening length increases with increasing concentration. The screening lengths for all electrolytes studied-including aqueous NaCl solutions, ionic liquids diluted with propylene carbonate, and pure ionic liquids-collapse onto a single curve when scaled by the dielectric constant. This nonmonotonic variation of the screening length with concentration, and its generality across ionic liquids and aqueous salt solutions, demonstrates an important characteristic of concentrated electrolytes of substantial relevance from biology to energy storage.

Length scale hierarchy and spatiotemporal change of alluvial morphologies over the Selenga River delta, Russia

NASA Astrophysics Data System (ADS)

Dong, T. Y.; Nittrouer, J.; McElroy, B. J.; Ma, H.; Czapiga, M. J.; Il'icheva, E.; Pavlov, M.; Parker, G.

2017-12-01

The movement of water and sediment in natural channels creates various types of alluvial morphologies that span length scales from dunes to deltas. The behavior of these morphologies is controlled microscopically by hydrodynamic conditions and bed material size, and macroscopically by hydrologic and geological settings. Alluvial morphologies can be modeled as either diffusive or kinematic waves, in accordance with their respective boundary conditions. Recently, it has been shown that the difference between these two dynamic behaviors of alluvial morphologies can be characterized by the backwater number, which is a dimensionless value normalizing the length scale of a morphological feature to its local hydrodynamic condition. Application of the backwater number has proven useful for evaluating the size of morphologies, including deltas (e.g., by assessing the preferential avulsion location of a lobe), and for comparing bedform types across different fluvial systems. Yet two critical questions emerge when applying the backwater number: First, how do different types of alluvial morphologies compare within a single deltaic system, where there is a hydrodynamic transition from uniform to non-uniform flow? Second, how do different types of morphologies evolve temporally within a system as a function of changing water discharge? This study addresses these questions by compiling and analyzing field data from the Selenga River delta, Russia, which include measurements of flow velocity, channel geometry, bed material grain size, and channel slope, as well as length scales of various morphologies, including dunes, island bars, meanders, bifurcations, and delta lobes. Data analyses reveal that the length scale of morphologies decrease and the backwater number increases as flow transitions from uniform to non-uniform conditions progressing downstream. It is shown that the evaluated length scale hierarchy and planform distribution of different morphologies can be used to estimate slope, shear velocity and sediment flux within this depositional system. The findings from this research can be applied to evaluate spatially and temporally varying morphodynamic conditions, based on structures measured from both modern systems and ancient sedimentary records.

Measurement of Two-Plasmon-Decay Dependence on Plasma Density Scale Length

NASA Astrophysics Data System (ADS)

Haberberger, D.

2013-10-01

An accurate understanding of the plasma scale-length (Lq) conditions near quarter-critical density is important in quantifying the hot electrons generated by the two-plasmon-decay (TPD) instability in long-scale-length plasmas. A novel target platform was developed to vary the density scale length and an innovative diagnostic was implemented to measure the density profiles above 1021 cm-3 where TPD is expected to have the largest growth. A series of experiments was performed using the four UV (351-nm) beams on OMEGA EP that varied the Lq by changing the radius of curvature of the target while maintaining a constant Iq/Tq. The fraction of laser energy converted to hot electrons (fhot) was observed to increase rapidly from 0.005% to 1% by increasing the plasma scale length from 130 μm to 300 μm, corresponding to target diameters of 0.4 mm to 8 mm. A new diagnostic was developed based on refractometry using angular spectral filters to overcome the large phase accumulation in standard interferometric techniques. The angular filter refractometer measures the refraction angles of a 10-ps, 263-nm probe laser after propagating through the plasma. An angular spectral filter is used in the Fourier plane of the probe beam, where the refractive angles of the rays are mapped to space. The edges of the filter are present in the image plane and represent contours of constant refraction angle. These contours are used to infer the phase of the probe beam, which are used to calculate the plasma density profile. In long-scale-length plasmas, the diagnostic currently measures plasma densities from ~1019 cm-3 to ~2 × 1021 cm-3. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944. In collaboration with D. H. Edgell, S. X. Hu, S. Ivancic, R. Boni, C. Dorrer, and D. H. Froula (Laboratory for Laser Energetics, U. of Rochester).

Modeling Near-Crack-Tip Plasticity from Nano- to Micro-Scales

NASA Technical Reports Server (NTRS)

Glaessgen, Edward H.; Saether, Erik; Hochhalter, Jake D.; Yamakov, Vesselin I.

2010-01-01

Several efforts that are aimed at understanding the plastic deformation mechanisms related to crack propagation at the nano-, meso- and micro-length scales including atomistic simulation, discrete dislocation plasticity, strain gradient plasticity and crystal plasticity are discussed. The paper focuses on discussion of newly developed methodologies and their application to understanding damage processes in aluminum and its alloys. Examination of plastic mechanisms as a function of increasing length scale illustrates increasingly complex phenomena governing plasticity

Site length for biological assessment of boatable rivers

EPA Science Inventory

There is increasing international interest by water resource management agencies worldwide in developing the capacity for quantitative bioassessments of boatable rivers. This interest stems from legal mandates requiring assessments, plus growing reocgnition of the threats to such...

Age-class structure and variability of two populations of the bluemask darter etheostoma (Doration) sp.

USGS Publications Warehouse

Simmons, J.W.; Layzer, J.B.; Smith, D.D.

2008-01-01

The bluemask darter Etheostoma (Doration) sp. is an endangered fish endemic to the upper Caney Fork system in the Cumberland River drainage in central Tennessee. Darters (Etheostoma spp.) are typically short-lived and exhibit rapid growth that quickly decreases with age. Consequently, estimating age of darters from length-frequency distributions can be difficult and subjective. We used a nonparametric kernel density estimator to reduce subjectivity in estimating ages of bluemask darters. Data were collected from a total of 2926 bluemask darters from the Collins River throughout three growing seasons. Additionally, data were collected from 842 bluemask darters from the Rocky River during one growing season. Analysis of length-frequencies indicated the presence of four age classes in both rivers. In each river, the majority of the population was comprised of fish 0.05). In both rivers, females were more abundant than males.

Efficient and Extensible Quasi-Explicit Modular Nonlinear Multiscale Battery Model: GH-MSMD

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Gi-Heon; Smith, Kandler; Lawrence-Simon, Jake

Complex physics and long computation time hinder the adoption of computer aided engineering models in the design of large-format battery cells and systems. A modular, efficient battery simulation model -- the multiscale multidomain (MSMD) model -- was previously introduced to aid the scale-up of Li-ion material and electrode designs to complete cell and pack designs, capturing electrochemical interplay with 3-D electronic current pathways and thermal response. Here, this paper enhances the computational efficiency of the MSMD model using a separation of time-scales principle to decompose model field variables. The decomposition provides a quasi-explicit linkage between the multiple length-scale domains andmore » thus reduces time-consuming nested iteration when solving model equations across multiple domains. In addition to particle-, electrode- and cell-length scales treated in the previous work, the present formulation extends to bus bar- and multi-cell module-length scales. We provide example simulations for several variants of GH electrode-domain models.« less

Efficient and Extensible Quasi-Explicit Modular Nonlinear Multiscale Battery Model: GH-MSMD

DOE PAGES

Kim, Gi-Heon; Smith, Kandler; Lawrence-Simon, Jake; ...

2017-03-24

Complex physics and long computation time hinder the adoption of computer aided engineering models in the design of large-format battery cells and systems. A modular, efficient battery simulation model -- the multiscale multidomain (MSMD) model -- was previously introduced to aid the scale-up of Li-ion material and electrode designs to complete cell and pack designs, capturing electrochemical interplay with 3-D electronic current pathways and thermal response. Here, this paper enhances the computational efficiency of the MSMD model using a separation of time-scales principle to decompose model field variables. The decomposition provides a quasi-explicit linkage between the multiple length-scale domains andmore » thus reduces time-consuming nested iteration when solving model equations across multiple domains. In addition to particle-, electrode- and cell-length scales treated in the previous work, the present formulation extends to bus bar- and multi-cell module-length scales. We provide example simulations for several variants of GH electrode-domain models.« less

The dynamics of oceanic fronts. I - The Gulf Stream

NASA Technical Reports Server (NTRS)

Kao, T. W.

1980-01-01

The establishment and maintenance of the mean hydrographic properties of large-scale density fronts in the upper ocean is considered. The dynamics is studied by posing an initial value problem starting with a near-surface discharge of buoyant water with a prescribed density deficit into an ambient stationary fluid of uniform density; full time dependent diffusion and Navier-Stokes equations are then used with constant eddy diffusion and viscosity coefficients, together with a constant Coriolis parameter. Scaling analysis reveals three independent scales of the problem including the radius of deformation of the inertial length, buoyancy length, and diffusive length scales. The governing equations are then suitably scaled and the resulting normalized equations are shown to depend on the Ekman number alone for problems of oceanic interest. It is concluded that the mean Gulf Stream dynamics can be interpreted in terms of a solution of the Navier-Stokes and diffusion equations, with the cross-stream circulation responsible for the maintenance of the front; this mechanism is suggested for the maintenance of the Gulf Stream dynamics.

Scale and time dependence of serial correlations in word-length time series of written texts

NASA Astrophysics Data System (ADS)

Rodriguez, E.; Aguilar-Cornejo, M.; Femat, R.; Alvarez-Ramirez, J.

2014-11-01

This work considered the quantitative analysis of large written texts. To this end, the text was converted into a time series by taking the sequence of word lengths. The detrended fluctuation analysis (DFA) was used for characterizing long-range serial correlations of the time series. To this end, the DFA was implemented within a rolling window framework for estimating the variations of correlations, quantified in terms of the scaling exponent, strength along the text. Also, a filtering derivative was used to compute the dependence of the scaling exponent relative to the scale. The analysis was applied to three famous English-written literary narrations; namely, Alice in Wonderland (by Lewis Carrol), Dracula (by Bram Stoker) and Sense and Sensibility (by Jane Austen). The results showed that high correlations appear for scales of about 50-200 words, suggesting that at these scales the text contains the stronger coherence. The scaling exponent was not constant along the text, showing important variations with apparent cyclical behavior. An interesting coincidence between the scaling exponent variations and changes in narrative units (e.g., chapters) was found. This suggests that the scaling exponent obtained from the DFA is able to detect changes in narration structure as expressed by the usage of words of different lengths.

Diffusion and scaling during early embryonic pattern formation

PubMed Central

Gregor, Thomas; Bialek, William; van Steveninck, Rob R. de Ruyter; Tank, David W.; Wieschaus, Eric F.

2005-01-01

Development of spatial patterns in multicellular organisms depends on gradients in the concentration of signaling molecules that control gene expression. In the Drosophila embryo, Bicoid (Bcd) morphogen controls cell fate along 70% of the anteroposterior axis but is translated from mRNA localized at the anterior pole. Gradients of Bcd and other morphogens are thought to arise through diffusion, but this basic assumption has never been rigorously tested in living embryos. Furthermore, because diffusion sets a relationship between length and time scales, it is hard to see how patterns of gene expression established by diffusion would scale proportionately as egg size changes during evolution. Here, we show that the motion of inert molecules through the embryo is well described by the diffusion equation on the relevant length and time scales, and that effective diffusion constants are essentially the same in closely related dipteran species with embryos of very different size. Nonetheless, patterns of gene expression in these different species scale with egg length. We show that this scaling can be traced back to scaling of the Bcd gradient itself. Our results, together with constraints imposed by the time scales of development, suggest that the mechanism for scaling is a species-specific adaptation of the Bcd lifetime. PMID:16352710

Double-exponential decay of orientational correlations in semiflexible polyelectrolytes.

PubMed

Bačová, P; Košovan, P; Uhlík, F; Kuldová, J; Limpouchová, Z; Procházka, K

2012-06-01

In this paper we revisited the problem of persistence length of polyelectrolytes. We performed a series of Molecular Dynamics simulations using the Debye-Hückel approximation for electrostatics to test several equations which go beyond the classical description of Odijk, Skolnick and Fixman (OSF). The data confirm earlier observations that in the limit of large contour separations the decay of orientational correlations can be described by a single-exponential function and the decay length can be described by the OSF relation. However, at short countour separations the behaviour is more complex. Recent equations which introduce more complicated expressions and an additional length scale could describe the results very well on both the short and the long length scale. The equation of Manghi and Netz when used without adjustable parameters could capture the qualitative trend but deviated in a quantitative comparison. Better quantitative agreement within the estimated error could be obtained using three equations with one adjustable parameter: 1) the equation of Manghi and Netz; 2) the equation proposed by us in this paper; 3) the equation proposed by Cannavacciuolo and Pedersen. Two characteristic length scales can be identified in the data: the intrinsic or bare persistence length and the electrostatic persistence length. All three equations use a single parameter to describe a smooth crossover from the short-range behaviour dominated by the intrinsic stiffness of the chain to the long-range OSF-like behaviour.

Multi-scale Modeling of Chromosomal DNA in Living Cells

NASA Astrophysics Data System (ADS)

Spakowitz, Andrew

The organization and dynamics of chromosomal DNA play a pivotal role in a range of biological processes, including gene regulation, homologous recombination, replication, and segregation. Establishing a quantitative theoretical model of DNA organization and dynamics would be valuable in bridging the gap between the molecular-level packaging of DNA and genome-scale chromosomal processes. Our research group utilizes analytical theory and computational modeling to establish a predictive theoretical model of chromosomal organization and dynamics. In this talk, I will discuss our efforts to develop multi-scale polymer models of chromosomal DNA that are both sufficiently detailed to address specific protein-DNA interactions while capturing experimentally relevant time and length scales. I will demonstrate how these modeling efforts are capable of quantitatively capturing aspects of behavior of chromosomal DNA in both prokaryotic and eukaryotic cells. This talk will illustrate that capturing dynamical behavior of chromosomal DNA at various length scales necessitates a range of theoretical treatments that accommodate the critical physical contributions that are relevant to in vivo behavior at these disparate length and time scales. National Science Foundation, Physics of Living Systems Program (PHY-1305516).

The Twilight Zone between Protein Order and Disorder

PubMed Central

Szilágyi, A.; Györffy, D.; Závodszky, P.

2008-01-01

The amino acid composition of intrinsically disordered proteins and protein segments characteristically differs from that of ordered proteins. This observation forms the basis of several disorder prediction methods. These, however, usually perform worse for smaller proteins (or segments) than for larger ones. We show that the regions of amino acid composition space corresponding to ordered and disordered proteins overlap with each other, and the extent of the overlap (the “twilight zone”) is larger for short than for long chains. To explain this finding, we used two-dimensional lattice model proteins containing hydrophobic, polar, and charged monomers and revealed the relation among chain length, amino acid composition, and disorder. Because the number of chain configurations exponentially grows with chain length, a larger fraction of longer chains can reach a low-energy, ordered state than do shorter chains. The amount of information carried by the amino acid composition about whether a protein or segment is (dis)ordered grows with increasing chain length. Smaller proteins rely more on specific interactions for stability, which limits the possible accuracy of disorder prediction methods. For proteins in the “twilight zone”, size can determine order, as illustrated by the example of two-state homodimers. PMID:18441033

The twilight zone between protein order and disorder.

PubMed

Szilágyi, A; Györffy, D; Závodszky, P

2008-08-01

The amino acid composition of intrinsically disordered proteins and protein segments characteristically differs from that of ordered proteins. This observation forms the basis of several disorder prediction methods. These, however, usually perform worse for smaller proteins (or segments) than for larger ones. We show that the regions of amino acid composition space corresponding to ordered and disordered proteins overlap with each other, and the extent of the overlap (the "twilight zone") is larger for short than for long chains. To explain this finding, we used two-dimensional lattice model proteins containing hydrophobic, polar, and charged monomers and revealed the relation among chain length, amino acid composition, and disorder. Because the number of chain configurations exponentially grows with chain length, a larger fraction of longer chains can reach a low-energy, ordered state than do shorter chains. The amount of information carried by the amino acid composition about whether a protein or segment is (dis)ordered grows with increasing chain length. Smaller proteins rely more on specific interactions for stability, which limits the possible accuracy of disorder prediction methods. For proteins in the "twilight zone", size can determine order, as illustrated by the example of two-state homodimers.

Dynamic and mechanical properties of supported lipid bilayers

NASA Astrophysics Data System (ADS)

Wu, Hsing-Lun; Tsao, Heng-Kwong; Sheng, Yu-Jane

2016-04-01

Supported lipid bilayers (SLBs) offer an excellent model system for investigating the physico-chemical properties of the cell membrane. In this work, dynamic and mechanical properties of SLBs are explored by dissipative particle dynamics simulations for lipids with different architectures (chain length, kink, and asymmetry associated with lipid tails). It is found that the lateral diffusivity (Dx) and flip-flop rate (FF) grow with increasing temperature in both gel and liquid phases and can be described by an Arrhenius-like expression. Three regimes can be clearly identified for symmetric and asymmetric saturated lipids but only two regimes are observed for kinked lipids. Both Dx and FF grow with decreasing tail length and increasing number of kinks. The stretching (KA) and apparent bending (KB) moduli exhibit concave upward curves with temperature and the minima are attained at Tm. In general, the minima of KA and KB decrease with the chain length and increase with number of kinks. The typical relation among the bending modulus, area stretching modulus, and bilayer thickness is still followed, KB = βKAh2 and β is much smaller in the gel phase. The dynamic and mechanical properties of lipids with asymmetric tails are found to situate between their symmetric counterparts.

Genetic response to rapid climate change: it's seasonal timing that matters.

PubMed

Bradshaw, W E; Holzapfel, C M

2008-01-01

The primary nonbiological result of recent rapid climate change is warming winter temperatures, particularly at northern latitudes, leading to longer growing seasons and new seasonal exigencies and opportunities. Biological responses reflect selection due to the earlier arrival of spring, the later arrival of fall, or the increasing length of the growing season. Animals from rotifers to rodents use the high reliability of day length to time the seasonal transitions in their life histories that are crucial to fitness in temperate and polar environments: when to begin developing in the spring, when to reproduce, when to enter dormancy or when to migrate, thereby exploiting favourable temperatures and avoiding unfavourable temperatures. In documented cases of evolutionary (genetic) response to recent, rapid climate change, the role of day length (photoperiodism) ranges from causal to inhibitory; in no case has there been demonstrated a genetic shift in thermal optima or thermal tolerance. More effort should be made to explore the role of photoperiodism in genetic responses to climate change and to rule out the role of photoperiod in the timing of seasonal life histories before thermal adaptation is assumed to be the major evolutionary response to climate change.

Measurements of the Influence of Integral Length Scale on Stagnation Region Heat Transfer

NASA Technical Reports Server (NTRS)

Vanfossen, G. James; Ching, Chang Y.

1994-01-01

The purpose was twofold: first, to determine if a length scale existed that would cause the greatest augmentation in stagnation region heat transfer for a given turbulence intensity and second, to develop a prediction tool for stagnation heat transfer in the presence of free stream turbulence. Toward this end, a model with a circular leading edge was fabricated with heat transfer gages in the stagnation region. The model was qualified in a low turbulence wind tunnel by comparing measurements with Frossling's solution for stagnation region heat transfer in a laminar free stream. Five turbulence generating grids were fabricated; four were square mesh, biplane grids made from square bars. Each had identical mesh to bar width ratio but different bar widths. The fifth grid was an array of fine parallel wires that were perpendicular to the axis of the cylindrical leading edge. Turbulence intensity and integral length scale were measured as a function of distance from the grids. Stagnation region heat transfer was measured at various distances downstream of each grid. Data were taken at cylinder Reynolds numbers ranging from 42,000 to 193,000. Turbulence intensities were in the range 1.1 to 15.9 percent while the ratio of integral length scale to cylinder diameter ranged from 0.05 to 0.30. Stagnation region heat transfer augmentation increased with decreasing length scale. An optimum scale was not found. A correlation was developed that fit heat transfer data for the square bar grids to within +4 percent. The data from the array of wires were not predicted by the correlation; augmentation was higher for this case indicating that the degree of isotropy in the turbulent flow field has a large effect on stagnation heat transfer. The data of other researchers are also compared with the correlation.

Pollutant Dispersion in Boundary Layers Exposed to Rural-to-Urban Transitions: Varying the Spanwise Length Scale of the Roughness

NASA Astrophysics Data System (ADS)

Tomas, J. M.; Eisma, H. E.; Pourquie, M. J. B. M.; Elsinga, G. E.; Jonker, H. J. J.; Westerweel, J.

2017-05-01

Both large-eddy simulations (LES) and water-tunnel experiments, using simultaneous stereoscopic particle image velocimetry and laser-induced fluorescence, have been used to investigate pollutant dispersion mechanisms in regions where the surface changes from rural to urban roughness. The urban roughness was characterized by an array of rectangular obstacles in an in-line arrangement. The streamwise length scale of the roughness was kept constant, while the spanwise length scale was varied by varying the obstacle aspect ratio l / h between 1 and 8, where l is the spanwise dimension of the obstacles and h is the height of the obstacles. Additionally, the case of two-dimensional roughness (riblets) was considered in LES. A smooth-wall turbulent boundary layer of depth 10 h was used as the approaching flow, and a line source of passive tracer was placed 2 h upstream of the urban canopy. The experimental and numerical results show good agreement, while minor discrepancies are readily explained. It is found that for l/h=2 the drag induced by the urban canopy is largest of all considered cases, and is caused by a large-scale secondary flow. In addition, due to the roughness transition the vertical advective pollutant flux is the main ventilation mechanism in the first three streets. Furthermore, by means of linear stochastic estimation the mean flow structure is identified that is responsible for street-canyon ventilation for the sixth street and onwards. Moreover, it is shown that the vertical length scale of this structure increases with increasing aspect ratio of the obstacles in the canopy, while the streamwise length scale does not show a similar trend.

Comparison of Growing Rod Instrumentation Versus Serial Cast Treatment for Early-Onset Scoliosis.

PubMed

Johnston, Charles E; McClung, Anna M; Thompson, George H; Poe-Kochert, Connie; Sanders, James O

2013-09-01

A comparison of 2 methods of early-onset scoliosis treatment using radiographic measures and complication rates. To determine whether a delaying tactic (serial casting) has comparable efficacy to a surgical method (insertion of growing rod instrumentation [GRI]) in the initial phase of early-onset deformity management. Serial casts are used in experienced centers to delay operative management of curves of surgical magnitude (greater than 50°) in children up to age 6 years. A total of 27 casted patients from 3 institutions were matched with 27 patients from a multicenter database according to age (within 6 months of each other), curve magnitude (within 10° of each other), and diagnosis. Outcomes were compared according to major curve magnitude, spine length (T1-S1), duration and number of treatment encounters, and complications. There was no difference in age (5.5 years) or initial curve magnitude (65°) between groups, which reflects the accuracy of the matching process. Six pairs of patients had neuromuscular diagnoses, 11 had idiopathic deformities, and 10 had syndromic scoliosis. Growing rod instrumentation patients had smaller curves (45.9° vs. 64.9°; p = .002) at follow-up, but there was no difference in absolute spine length (GRI = 32.0 cm; cast = 30.6 cm; p = .26), even though GRI patients had been under treatment for a longer duration (4.5 vs. 2.4 years; p < .0001) and had undergone a mean of 5.5 lengthenings compared with 4.0 casts. Growing rod instrumentation patients had a 44% complication rate, compared with 1 cast complication. Of 27 casted patients, 15 eventually had operative treatment after a mean delay of 1.7 years after casting. Cast treatment is a valuable delaying tactic for younger children with early-onset scoliosis. Spine deformity is adequately controlled, spine length is not compromised, and surgical complications associated with early GRI treatment are avoided. Copyright © 2013 Scoliosis Research Society. Published by Elsevier Inc. All rights reserved.

Dynamics of an elastic sphere containing a thin creeping region and immersed in an acoustic region for similar viscous-elastic and acoustic time- and length-scales

NASA Astrophysics Data System (ADS)

Gat, Amir; Friedman, Yonathan

2017-11-01

The characteristic time of low-Reynolds number fluid-structure interaction scales linearly with the ratio of fluid viscosity to solid Young's modulus. For sufficiently large values of Young's modulus, both time- and length-scales of the viscous-elastic dynamics may be similar to acoustic time- and length-scales. However, the requirement of dominant viscous effects limits the validity of such regimes to micro-configurations. We here study the dynamics of an acoustic plane wave impinging on the surface of a layered sphere, immersed within an inviscid fluid, and composed of an inner elastic sphere, a creeping fluid layer and an external elastic shell. We focus on configurations with similar viscous-elastic and acoustic time- and length-scales, where the viscous-elastic speed of interaction between the creeping layer and the elastic regions is similar to the speed of sound. By expanding the linearized spherical Reynolds equation into the relevant spectral series solution for the hyperbolic elastic regions, a global stiffness matrix of the layered elastic sphere was obtained. This work relates viscous-elastic dynamics to acoustic scattering and may pave the way to the design of novel meta-materials with unique acoustic properties. ISF 818/13.

CNT Based Artificial Hair Sensors for Predictable Boundary Layer Air Flow Sensing (Postscript)

DTIC Science & Technology

2016-11-07

hairs. The moment sensitivity is shown to scale inversely with the CNT length and stiffness to a typical maximum of 1.3 ± 0.4% resistance change nN−1...determined air flow is obtained using theory and measurement for various lengths of hairs. The moment sensitivity is shown to scale inversely with the

Population structure of the African Clawed Frog (Xenopus laevis) in maize-growing areas with atrazine application versus non-maize-growing areas in South Africa

USGS Publications Warehouse

Du Preez, L.H.; Solomon, K.R.; Carr, J.A.; Giesy, J.P.; Gross, T.S.; Kendall, R.J.; Smith, E.E.; Van Der Kraak, G. L.; Weldon, C.

2005-01-01

The herbicide atrazine has been suggested to cause gonadal deformities in frogs and could possibly impact on reproduction. Since the early 1960s, atrazine has been used in large amounts in maize production areas of South Africa. These areas overlap with populations of the African Clawed Frog (Xenopus laevis) that has a wide distribution in southern Africa and is found in most water-bodies including those where atrazine residues are detected. The aim of this study was to compare various attributes of individual- and population-level responses of X. laevis from maize-growing and non-maize-growing areas. Xenopus laevis were studied in three reference and five maize-growing sites. Sex ratio, snout-vent length, body-mass and age profiles were found to be similar for populations in maize-growing and non-maize-growing areas. Our mark-recapture data indicated that all sites had robust populations. There were no significant relationships between exposure to atrazine and any of the parameters investigated in populations of X. laevis.

Magnetic field line random walk in two-dimensional dynamical turbulence

NASA Astrophysics Data System (ADS)

Wang, J. F.; Qin, G.; Ma, Q. M.; Song, T.; Yuan, S. B.

2017-08-01

The field line random walk (FLRW) of magnetic turbulence is one of the important topics in plasma physics and astrophysics. In this article, by using the field line tracing method, the mean square displacement (MSD) of FLRW is calculated on all possible length scales for pure two-dimensional turbulence with the damping dynamical model. We demonstrate that in order to describe FLRW with the damping dynamical model, a new dimensionless quantity R is needed to be introduced. On different length scales, dimensionless MSD shows different relationships with the dimensionless quantity R. Although the temporal effect affects the MSD of FLRW and even changes regimes of FLRW, it does not affect the relationship between the dimensionless MSD and dimensionless quantity R on all possible length scales.

Emergence of linear elasticity from the atomistic description of matter

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cakir, Abdullah, E-mail: acakir@ntu.edu.sg; Pica Ciamarra, Massimo; Dipartimento di Scienze Fisiche, CNR–SPIN, Università di Napoli Federico II, I-80126 Napoli

2016-08-07

We investigate the emergence of the continuum elastic limit from the atomistic description of matter at zero temperature considering how locally defined elastic quantities depend on the coarse graining length scale. Results obtained numerically investigating different model systems are rationalized in a unifying picture according to which the continuum elastic limit emerges through a process determined by two system properties, the degree of disorder, and a length scale associated to the transverse low-frequency vibrational modes. The degree of disorder controls the emergence of long-range local shear stress and shear strain correlations, while the length scale influences the amplitude of themore » fluctuations of the local elastic constants close to the jamming transition.« less

Cold Ion Demagnetization near the X-line of Magnetic Reconnection

NASA Technical Reports Server (NTRS)

Toledo-Redondo, Serio; Andre, Mats; Khotyaintsev, Yuri V.; Vaivads, Andris; Walsh, Andrew; Li, Wenya; Graham, Daniel B.; Lavraud, Benoit; Masson, Arnaud; Aunai, Nicolas;

Dependence of exponents on text length versus finite-size scaling for word-frequency distributions

NASA Astrophysics Data System (ADS)

Corral, Álvaro; Font-Clos, Francesc

2017-08-01

Some authors have recently argued that a finite-size scaling law for the text-length dependence of word-frequency distributions cannot be conceptually valid. Here we give solid quantitative evidence for the validity of this scaling law, using both careful statistical tests and analytical arguments based on the generalized central-limit theorem applied to the moments of the distribution (and obtaining a novel derivation of Heaps' law as a by-product). We also find that the picture of word-frequency distributions with power-law exponents that decrease with text length [X. Yan and P. Minnhagen, Physica A 444, 828 (2016), 10.1016/j.physa.2015.10.082] does not stand with rigorous statistical analysis. Instead, we show that the distributions are perfectly described by power-law tails with stable exponents, whose values are close to 2, in agreement with the classical Zipf's law. Some misconceptions about scaling are also clarified.

Cold ion demagnetization near the X-line of magnetic reconnection

NASA Astrophysics Data System (ADS)

Toledo-Redondo, Sergio; André, Mats; Khotyaintsev, Yuri V.; Vaivads, Andris; Walsh, Andrew; Li, Wenya; Graham, Daniel B.; Lavraud, Benoit; Masson, Arnaud; Aunai, Nicolas; Divin, Andrey; Dargent, Jeremy; Fuselier, Stephen; Gershman, Daniel J.; Dorelli, John; Giles, Barbara; Avanov, Levon; Pollock, Craig; Saito, Yoshifumi; Moore, Thomas E.; Coffey, Victoria; Chandler, Michael O.; Lindqvist, Per-Arne; Torbert, Roy; Russell, Christopher T.

2016-07-01

Although the effects of magnetic reconnection in magnetospheres can be observed at planetary scales, reconnection is initiated at electron scales in a plasma. Surrounding the electron diffusion region, there is an Ion-Decoupling Region (IDR) of the size of the ion length scales (inertial length and gyroradius). Reconnection at the Earth's magnetopause often includes cold magnetospheric (few tens of eV), hot magnetospheric (10 keV), and magnetosheath (1 keV) ions, with different gyroradius length scales. We report observations of a subregion inside the IDR of the size of the cold ion population gyroradius (˜15 km) where the cold ions are demagnetized and accelerated parallel to the Hall electric field. Outside the subregion, cold ions follow the E × B motion together with electrons, while hot ions are demagnetized. We observe a sharp cold ion density gradient separating the two regions, which we identify as the cold and hot IDRs.

Benchmarking sheath subgrid boundary conditions for macroscopic-scale simulations

NASA Astrophysics Data System (ADS)

Jenkins, T. G.; Smithe, D. N.

2015-02-01

The formation of sheaths near metallic or dielectric-coated wall materials in contact with a plasma is ubiquitous, often giving rise to physical phenomena (sputtering, secondary electron emission, etc) which influence plasma properties and dynamics both near and far from the material interface. In this paper, we use first-principles PIC simulations of such interfaces to formulate a subgrid sheath boundary condition which encapsulates fundamental aspects of the sheath behavior at the interface. Such a boundary condition, based on the capacitive behavior of the sheath, is shown to be useful in fluid simulations wherein sheath scale lengths are substantially smaller than scale lengths for other relevant physical processes (e.g. radiofrequency wavelengths), in that it enables kinetic processes associated with the presence of the sheath to be numerically modeled without explicit resolution of spatial and temporal sheath scales such as electron Debye length or plasma frequency.

Strong evidence for changing fish reproductive phenology under climate warming on the Tibetan Plateau.

PubMed

Tao, Juan; He, Dekui; Kennard, Mark J; Ding, Chengzhi; Bunn, Stuart E; Liu, Chunlong; Jia, Yintao; Che, Rongxiao; Chen, Yifeng

2018-05-01

Phenological responses to climate change have been widely observed and have profound and lasting effects on ecosystems and biodiversity. However, compared to terrestrial ecosystems, the long-term effects of climate change on species' phenology are poorly understood in aquatic ecosystems. Understanding the long-term changes in fish reproductive phenology is essential for predicting population dynamics and for informing management strategies, but is currently hampered by the requirement for intensive field observations and larval identification. In this study, a very low-frequency sampling of juveniles and adults combined with otolith measurements (long axis length of the first annulus; LAFA) of an endemic Tibetan Plateau fish (Gymnocypris selincuoensis) was used to examine changes in reproductive phenology associated with climate changes from the 1970s to 2000s. Assigning individual fish to their appropriate calendar year class was assisted by dendrochronological methods (crossdating). The results demonstrated that LAFA was significantly and positively associated with temperature and growing season length. To separate the effects of temperature and the growing season length on LAFA growth, measurements of larval otoliths from different sites were conducted and revealed that daily increment additions were the main contributor (46.3%), while temperature contributed less (12.0%). Using constructed water-air temperature relationships and historical air temperature records, we found that the reproductive phenology of G. selincuoensis was strongly advanced in the spring during the 1970s and 1990s, while the increased growing season length in the 2000s was mainly due to a delayed onset of winter. The reproductive phenology of G. selincuoensis advanced 2.9 days per decade on average from the 1970s to 2000s, and may have effects on recruitment success and population dynamics of this species and other biota in the ecosystem via the food web. The methods used in this study are applicable for studying reproductive phenological changes across a wide range of species and ecosystems. © 2018 John Wiley & Sons Ltd.

Beta Vulgaris and Easter Egg Radish Growth in Varying Mediums and Locations

NASA Astrophysics Data System (ADS)

Brittingham, P.; Figueroa, A.

2016-12-01

The purpose of this experiment is to study the harvest yield and taste of Beta Vulgaris and Easter Egg Radish microgreens in different growing mediums and locations at the Stanford Farm. They are grown in three different mediums: compost, potting mix, and a 50/50 mix of both. We hypothesized that the even mixture of compost and potting mix would have a larger harvest yield and greater nutrient content while being grown in the lath house. The experiment begins with two sets of three planting trays, one in the greenhouse and one in the lath house, filled with the former growing mediums. Next, the seeds of the microgreens are sprinkled evenly in their designated halves of the tray, then covered with a thin layer of their growing medium to allow for germination. The trays in the lath house are watered 1-2 times a day while the greenhouse trays must be watered thrice. The progress of the microgreens are observed everyday and the weight, height, root length and width of the plant is measured. Once harvested, 9-11 days after planting, the microgreens are weighed and tested for taste and consistency. Because each microgreen variety is planted in only half of a tray, the weight of the full tray is calculated to estimate the value and yield of a single species on a larger scale. Upon collecting data from both the lath house and greenhouse, we found that the plants perform better in the 50/50 mixture and potting mix, but grow very poorly in the compost because it requires a lot of water and does not hold the moisture it receives. We also had a higher yield of Easter Egg Radish due to its height and water content. In the greenhouse, both species had a richer flavor. The farm plans to start a microgreen business to provide an added source of income and utilize the results of this experiment in an applied business model focused on efficiency and profit.

Divergent phenological response to hydroclimate variability in forested mountain watersheds.

PubMed

Hwang, Taehee; Band, Lawrence E; Miniat, Chelcy F; Song, Conghe; Bolstad, Paul V; Vose, James M; Love, Jason P

2014-08-01

Mountain watersheds are primary sources of freshwater, carbon sequestration, and other ecosystem services. There is significant interest in the effects of climate change and variability on these processes over short to long time scales. Much of the impact of hydroclimate variability in forest ecosystems is manifested in vegetation dynamics in space and time. In steep terrain, leaf phenology responds to topoclimate in complex ways, and can produce specific and measurable shifts in landscape forest patterns. The onset of spring is usually delayed at a specific rate with increasing elevation (often called Hopkins' Law; Hopkins, 1918), reflecting the dominant controls of temperature on greenup timing. Contrary with greenup, leaf senescence shows inconsistent trends along elevation gradients. Here, we present mechanisms and an explanation for this variability and its significance for ecosystem patterns and services in response to climate. We use moderate-resolution imaging spectro-radiometer (MODIS) Normalized Difference Vegetation Index (NDVI) data to derive landscape-induced phenological patterns over topoclimate gradients in a humid temperate broadleaf forest in southern Appalachians. These phenological patterns are validated with different sets of field observations. Our data demonstrate that divergent behavior of leaf senescence with elevation is closely related to late growing season hydroclimate variability in temperature and water balance patterns. Specifically, a drier late growing season is associated with earlier leaf senescence at low elevation than at middle elevation. The effect of drought stress on vegetation senescence timing also leads to tighter coupling between growing season length and ecosystem water use estimated from observed precipitation and runoff generation. This study indicates increased late growing season drought may be leading to divergent ecosystem response between high and low elevation forests. Landscape-induced phenological patterns are easily observed over wide areas and may be used as a unique diagnostic for sources of ecosystem vulnerability and sensitivity to hydroclimate change. © 2014 John Wiley & Sons Ltd.

Sclerochronological analysis of Saxidomus gigantea: Implications for reconstructing past seasonality and sea ice extent in the Northern Pacific Ocean

NASA Astrophysics Data System (ADS)

Bassett, C.; Andrus, C. F. T.

2015-12-01

Sclerochronological analysis of biogenic carbonates provides valuable paleoenvironmental information. Oxygen isotope analysis of bivalve shell yields information on the temperature of the water in which the organism grew. However, in coastal environments, variations in δ18Owater may complicate the interpretation of shell isotope profiles. Measuring and comparing the length of seasonal shell growth in select species of bivalves may complement isotopic analysis, together providing a more precise paleoclimate reconstruction. This project aims to determine the reliability of sclerochronological analysis of bivalves in reconstructing seasonality along the Northwest Coast of North America. To compare bivalves growing at different seasonal temperature conditions, samples of Saxidomus gigantea were collected from southern Alaska and northern British Columbia. Winter cessation lines were identified using oxygen isotope (δ18O) peaks from a profile of variation over the life of the clam, which was sampled sequentially from a section of its shell. Shell growth stops below ~4-5°C and so each winter cessation indicates temperatures lower than this threshold. Lunar-daily growth lines were counted between these winter growth cessation breaks, which quantitatively measure the length of the growing season. The resulting data were compared between habitats to assess if this is a useful method of determining the length of the growing season. If this method of assessing seasonality appears valid, it can be applied to ancient shells abundant in archaeological shell middens to make inferences about past seawater conditions and potentially indicate the presence or absence of the conditions necessary for sea ice accumulation.