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  1. Tectonic Evolution of the Çayirhan Neogene Basin (Ankara), Central Turkey

    NASA Astrophysics Data System (ADS)

    Behzad, Bezhan; Koral, Hayrettin; İşb&idot; l, Duygu; Karaaǧa; ç, Serdal

    2016-04-01

    Çayırhan (Ankara) is located at crossroads of the Western Anatolian extensional region, analogous to the Basin and Range Province, and suture zone of the Neotethys-Ocean, which is locus of the North Anatolian Transform since the Late Miocene. To the north of Çayırhan (Ankara), a Neogene sedimentary basin comprises Lower-Middle Miocene and Upper Miocene age formations, characterized by swamp, fluvial and lacustrine settings respectively. This sequence is folded and transected by neotectonic faults. The Sekli thrust fault is older than the Lower-Middle Miocene age formations. The Davutoǧlan fault is younger than the Lower-Middle Miocene formations and is contemporaneous to the Upper Miocene formation. The Çatalkaya fault is younger than the Upper Miocene formation. The sedimentary and tectonic features provide information on mode, timing and evolution of this Neogene age sedimentary basin in Central Turkey. It is concluded that the region underwent a period of uplift and erosion under the influence of contractional tectonics prior to the Early-Middle Miocene, before becoming a semi-closed basin under influence of transtensional tectonics during the Early-Middle Miocene and under influence of predominantly extensional tectonics during the post-Late Miocene times. Keywords: Tectonics, Extension, Transtension, Stratigraphy, Neotectonic features.

  2. Factors Controlling Sediment Load in The Central Anatolia Region of Turkey: Ankara River Basin

    NASA Astrophysics Data System (ADS)

    Duru, Umit; Wohl, Ellen; Ahmadi, Mehdi

    2017-05-01

    Better understanding of the factors controlling sediment load at a catchment scale can facilitate estimation of soil erosion and sediment transport rates. The research summarized here enhances understanding of correlations between potential control variables on suspended sediment loads. The Soil and Water Assessment Tool was used to simulate flow and sediment at the Ankara River basin. Multivariable regression analysis and principal component analysis were then performed between sediment load and controlling variables. The physical variables were either directly derived from a Digital Elevation Model or from field maps or computed using established equations. Mean observed sediment rate is 6697 ton/year and mean sediment yield is 21 ton/y/km² from the gage. Soil and Water Assessment Tool satisfactorily simulated observed sediment load with Nash-Sutcliffe efficiency, relative error, and coefficient of determination ( R²) values of 0.81, -1.55, and 0.93, respectively in the catchment. Therefore, parameter values from the physically based model were applied to the multivariable regression analysis as well as principal component analysis. The results indicate that stream flow, drainage area, and channel width explain most of the variability in sediment load among the catchments. The implications of the results, efficient siltation management practices in the catchment should be performed to stream flow, drainage area, and channel width.

  3. Factors Controlling Sediment Load in The Central Anatolia Region of Turkey: Ankara River Basin.

    PubMed

    Duru, Umit; Wohl, Ellen; Ahmadi, Mehdi

    2017-01-18

    Better understanding of the factors controlling sediment load at a catchment scale can facilitate estimation of soil erosion and sediment transport rates. The research summarized here enhances understanding of correlations between potential control variables on suspended sediment loads. The Soil and Water Assessment Tool was used to simulate flow and sediment at the Ankara River basin. Multivariable regression analysis and principal component analysis were then performed between sediment load and controlling variables. The physical variables were either directly derived from a Digital Elevation Model or from field maps or computed using established equations. Mean observed sediment rate is 6697 ton/year and mean sediment yield is 21 ton/y/km² from the gage. Soil and Water Assessment Tool satisfactorily simulated observed sediment load with Nash-Sutcliffe efficiency, relative error, and coefficient of determination (R²) values of 0.81, -1.55, and 0.93, respectively in the catchment. Therefore, parameter values from the physically based model were applied to the multivariable regression analysis as well as principal component analysis. The results indicate that stream flow, drainage area, and channel width explain most of the variability in sediment load among the catchments. The implications of the results, efficient siltation management practices in the catchment should be performed to stream flow, drainage area, and channel width.

  4. Urban Heat Island ın Ankara

    NASA Astrophysics Data System (ADS)

    Yılmaz, Erkan

    2016-04-01

    In this study, the seasonal variation of the surface temperature of Ankara urban area and its enviroment have been analyzed by using Landsat 7 image. The Landsat 7 images of each month from 2007 to 2011 have been used to analyze the annually changes of the surface temperature. The land cover of the research area was defined with supervised classification method on the basis of the satellite image belonging to 2008 July. After determining the surface temperatures from 6-1 bands of satellite images, the monthly mean surface temperatures were calculated for land cover classification for the period between 2007 and 2011. According to the results obtained, the surface temperatures are high in summer and low in winter from the airtemperatures. all satellite images were taken at 10:00 am, it is found that urban areas are cooler than rural areas at 10:00 am. Regarding the land cover classification, the water surfaces are the coolest surfaces during the whole year.The warmest areas are the grasslands and dry farming areas. While the parks are warmer than the urban areas during the winter, during the summer they are cooler than artificial land covers. The urban areas with higher building density are the cooler surfaces after water bodies.

  5. BASINS

    EPA Pesticide Factsheets

    Better Assessment Science Integrating Point and Nonpoint Sources (BASINS) is a multipurpose environmental analysis system designed to help regional, state, and local agencies perform watershed- and water quality-based studies.

  6. Chemical and stable-radiogenic isotope compositions of Polatlı-Haymana thermal waters (Ankara, Turkey)

    NASA Astrophysics Data System (ADS)

    Akilli, Hafize; Mutlu, Halim

    2016-04-01

    Complex tectono-magmatic evolution of the Anatolian land resulted in development of numerous geothermal areas through Turkey. The Ankara region in central Anatolia is surrounded by several basins which are filled with upper Cretaceous-Tertiary sediments. Overlying Miocene volcanics and step faulting along the margins of these basins played a significant role in formation of a number of low-enthalpy thermal waters. In this study, chemical and isotopic compositions of Polatlı and Haymana geothermal waters in the Ankara region are investigated. The Polatlı-Haymana waters with a temperature range of 24 to 43 °C are represented by Ca-(Na)-HCO3 composition implying derivation from carbonate type reservoir rocks. Oxygen-hydrogen isotope values of the waters are conformable with the Global Meteoric Water Line and point to a meteoric origin. The carbon isotopic composition in dissolved inorganic carbon (DIC) of the studied waters is between -21.8 and -1.34 permil (vs. VPDB). Marine carbonates and organic rocks are the main sources of carbon. There is a high correlation between oxygen (3.7 to 15.0 permil; VSMOW) and sulfur (-9.2 to 19.5 permil; VCDT) isotope compositions of sulfate in waters. The mixing of sulfate from dissolution of marine carbonates and terrestrial evaporite units is the chief process behind the observed sulfate isotope systematics of the samples. 87Sr/86Sr ratios of waters varying from 0.705883 to 0.707827 are consistent with those of reservoir rocks. The temperatures calculated by SO4-H2O isotope geothermometry are between 81 and 138 °C nearly doubling the estimates from chemical geothermometers.

  7. Determination of Coleoptera fauna on carcasses in Ankara province, Turkey.

    PubMed

    Ozdemir, Senem; Sert, Osman

    2009-01-10

    In this study, 40 species from Staphylinidae, Histeridae, Dermestidae, Silphidae, Nitidulidae and Cleridae families of Coleoptera which were found in 12 pig (Sus scrofa L.) carcasses were identified and recorded during a one-year period at the Hacettepe University Beytepe Campus located in Ankara, Turkey. According to the duration of their presence on the carcasses, 22 of these species were accepted to be important in decomposition. Their distribution over the months and the duration of their presence in the various decomposition stages over the seasons were determined.

  8. Coprodiagnosis of Echinococcus granulosus infection in dogs from Ankara, Turkey.

    PubMed

    Öge, Hatice; Öge, Semih; Gönenç, Bahadır; Sarımehmetoğlu, Oğuz; Özbakış, Gökben

    2017-08-15

    The present study were undertaken to compare two isolation techniques (centrifugal flotation and sedimentation) for recovering taeniid eggs from faecal samples, to identify E. granulosus DNA from taeniid eggs by PCR, and to determine the prevalence of E. granulosus in dogs in villages. Faecal samples were collected from 100 dogs in Ankara province. Taenia spp. eggs were found in 27% of dogs faeces. Echinococcus granulosus-specific PCR was obtained in 14 (51.85%) of the taeniid eggs-positive samples. As well as finding Taenia eggs in dogs' faeces, we also found eggs of some helminthic parasites; such as Dipylidium caninum, Toxocara canis, Toxascaris leonina, Trichuris sp., Capillaria sp., Filaroides sp., Dioctophyme renale, Linguatula serrata, hookworm, Dicrocoelium sp., Fasciola sp. and Ascaridia galli. Significantly, more dogs excreting taeniid eggs were diagnosed with the sedimentation method (n=27) as compared to the flotation method (n=10). Copyright © 2017 Elsevier B.V. All rights reserved.

  9. Investigation of Bartonella henselae in cats in Ankara, Turkey.

    PubMed

    Celebi, B; Kilic, S; Aydin, N; Tarhan, G; Carhan, A; Babur, C

    2009-05-01

    The purpose of this study was to determine Bartonella henselae prevalance in cats in Ankara. Whole bloods and sera collected from 256 cats were investigated for the presence feline Bartonella species by culture and sera were tested for the presence of antibodies against B. henselae IgG using immunofluorescence assay. Bartonella species were isolated by blood culture from 24 (9.4%) cats. Bartonella isolates were subjected to restriction fragment length polymorphism (RFLP) by using TaqI and HhaI endonucleases to identify species. Twenty-one isolates were determined as B. henselae and three of 24 isolates were determined as Bartonella clarridgeiae with RFLP. The bacteraemia prevalence and seroprevalence of B. henselae IgG antibodies in cats was detected as 8.2% and 18.6% respectively. This is the first report on B. henselea and B. clarridgeiae in cats in Turkey.

  10. Recombinant modified vaccinia virus Ankara-based malaria vaccines.

    PubMed

    Sebastian, Sarah; Gilbert, Sarah C

    2016-01-01

    A safe and effective malaria vaccine is a crucial part of the roadmap to malaria elimination/eradication by the year 2050. Viral-vectored vaccines based on adenoviruses and modified vaccinia virus Ankara (MVA) expressing malaria immunogens are currently being used in heterologous prime-boost regimes in clinical trials for induction of strong antigen-specific T-cell responses and high-titer antibodies. Recombinant MVA is a safe and well-tolerated attenuated vector that has consistently shown significant boosting potential. Advances have been made in large-scale MVA manufacture as high-yield producer cell lines and high-throughput purification processes have recently been developed. This review describes the use of MVA as malaria vaccine vector in both preclinical and clinical studies in the past 5 years.

  11. Ambulance times of Ankara emergency aid and rescue services' ambulance system.

    PubMed

    Altintaş, K H; Bilir, N

    2001-03-01

    The aim of this study was to determine various times related to the ambulance activities of Ankara Emergency Aid and Rescue Services (EARS) and if necessary contribute to the improvement of them. A descriptive study was planned to determine various times related to the ambulance activities of Ankara EARS. The data was collected by one of the researchers. The study was conducted between 1 October 1995 and 30 September 1996. The variables of the study were: delay time, response time, time at the scene (scene time), round trip time, transport time and total run time of Ankara EARS ambulance activities. Ankara EARS Emergency Call Registry Forms (5638 forms) were evaluated for the above stated variables. The computer program EPI-INFO 5.0 was used in the study. The median response time of Ankara EARS was found to be 9 minutes. In the research year, the median delay time was 2 minutes. Median arrival to patient contact time of Ankara EARS was 2 minutes. Median time at the scene was 7 minutes. Median round trip time of the system was 44 minutes. The median time to arrive at the scene from the ambulance station was 8 minutes. The median transport time was 10 minutes. The median total run time was 30 minutes. As the median response time was found to be 9 minutes it is concluded that there should be more ambulance vehicles to improve this time of Ankara EARS. Due to financial problems, times were recorded manually by the ambulance crew and dispatchers of Ankara EARS. If digital and electronic recording systems are used, these times might be more precise.

  12. Electrocution fatalities in military personnel in Ankara, Turkey

    PubMed Central

    Tugcu, Harun; Ozsoy, Sait; Balandiz, Huseyin

    2015-01-01

    Objectives: To investigate various cases of death caused by electrical injuries among Turkish military personnel. Methods: We retrospectively reviewed fatality cases of military personnel between 1994 and 2013 at the Department of Forensic Medicine, Gulhane Military Medical Academy, School of Medicine, Ankara, Turkey, the only forensic medicine center for the Turkish Armed Forces. Medical records and autopsy reports of cases of electrical fatalities were reviewed and analyzed in terms of age and gender-specific incidence, voltage, contact details, body region distribution, location, and season of incident, site, and severity of injuries sustained, and histopathological and toxicological findings. Results: Sixteen (3.5%) out of the 450 autopsy cases involved electrocution. All deaths were accidental and most frequently occurred outdoors (75%). Eight (50%) died due to high voltage while 6 (37.5%) died due to low voltage. The entry and exit lesions were determined most frequently in cases with high voltage injury. The low voltage deaths commonly occurred at the scene of the event (66.6%), while almost all high voltage deaths occurred in the hospital (87.5%, p=0.03). Electrical burns were most commonly detected in the upper extremities (32.6%, n=14). Conclusion: The present study shows that deaths due to high voltage electrocution are more frequent than low voltage electrocution among military personnel. PMID:25630009

  13. Internet use among high school students in Ankara, Turkey.

    PubMed

    Vaizoglu, Songul A; Aslan, Dilek; Gormus, Uzay; Unluguzel, Goksenin; Ozemri, Sebnem; Akkus, Abdulkadir; Guler, Cagatay

    2004-06-01

    Internet use has grown considerably in recent years throughout the world, particularly among young people. This study aimed at assessing Internet use among high school students. This is a cross-sectional epidemiological study involving 246 students in 7 classes representing first, second, and third year students (754 persons) at a high school in Ankara, Turkey during March 2001. An Internet use questionnaire comprising 34 questions was used. It was found that 86.5% of the students used the Internet at home. The mean daily Internet use was 2.5 hours during vacation, and less while school was in session. Although 86.5% of students with computers at home had Internet connections, approximately half of the students reported that they had frequently gone to Internet cafe's. Significant differences between boys and girls were found in terms of hours spent on the Internet and purpose of use, and changes over time in hours spent. "Daily" and "weekly" Internet use is more frequent among boys than girls. Boys visit cyber-sex sites more than girls. Those whose weekly Internet use was 4 hours or more were found to have been using the Internet for 36 months or more; they had irregular eating habits, and their relatives complained more frequently on the amount of time they spent on the Internet.

  14. Electrocution fatalities in military personnel in Ankara, Turkey.

    PubMed

    Tugcu, Harun; Özsoy, Sait; Balandiz, Huseyin

    2015-01-01

    To investigate various cases of death caused by electrical injuries among Turkish military personnel. We retrospectively reviewed fatality cases of military personnel between 1994 and 2013 at the Department of Forensic Medicine, Gulhane Military Medical Academy, School of Medicine, Ankara, Turkey, the only forensic medicine center for the Turkish Armed Forces. Medical records and autopsy reports of cases of electrical fatalities were reviewed and analyzed in terms of age and gender-specific incidence, voltage, contact details, body region distribution, location, and season of incident, site, and severity of injuries sustained, and histopathological and toxicological findings. Sixteen (3.5%) out of the 450 autopsy cases involved electrocution. All deaths were accidental and most frequently occurred outdoors (75%). Eight (50%) died due to high voltage while 6 (37.5%) died due to low voltage. The entry and exit lesions were determined most frequently in cases with high voltage injury. The low voltage deaths commonly occurred at the scene of the event (66.6%), while almost all high voltage deaths occurred in the hospital (87.5%, p=0.03). Electrical burns were most commonly detected in the upper extremities (32.6%, n=14). The present study shows that deaths due to high voltage electrocution are more frequent than low voltage electrocution among military personnel.

  15. Effects of urbanization on climate of İstanbul and Ankara

    NASA Astrophysics Data System (ADS)

    Karaca, Mehmet; Tayanç, Mete; Toros, Hüseyi˙n.

    The purpose of this work is to study regional climate change and investigate the effects of urbanization on climates of two largest cities in Turkey: İstanbul and Ankara. Air temperature (mean, maximum and minimum) data of İstanbul and Ankara are analyzed to study regional climate change and to understand the possible effects of urbanization on the climate of these regions owing to industrialization and large flux of migration from rural parts of the country. For the trend analysis, linear regression and the sequential version of the Mann-Kendall test is used. A significant upward trend is found in the urban temperatures of southern İstanbul, which is the most highly populated and industrialized part of the city compared to its rural parts. Northern stations do not show any warming trend; instead, they have a cooling trend. Urbanization and industrialization in the southern part of İstanbul has a negative effect on regional cooling. In spite of Ankara's urban geometry and air pollution problem, the urban station in Ankara does not show any warming trend. A significant urban heat island intensity ( urban-rural) is not observed in Ankara.

  16. Air pollution forecasting in Ankara, Turkey using air pollution index and its relation to assimilative capacity of the atmosphere.

    PubMed

    Genc, D Deniz; Yesilyurt, Canan; Tuncel, Gurdal

    2010-07-01

    Spatial and temporal variations in concentrations of CO, NO, NO(2), SO(2), and PM(10), measured between 1999 and 2000, at traffic-impacted and residential stations in Ankara were investigated. Air quality in residential areas was found to be influenced by traffic activities in the city. Pollutant ratios were proven to be reliable tracers to differentiate between different sources. Air pollution index (API) of the whole city was calculated to evaluate the level of air quality in Ankara. Multiple linear regression model was developed for forecasting API in Ankara. The correlation coefficients were found to be 0.79 and 0.63 for different time periods. The assimilative capacity of Ankara atmosphere was calculated in terms of ventilation coefficient (VC). The relation between API and VC was investigated and found that the air quality in Ankara was determined by meteorology rather than emissions.

  17. Pesticide poisoning cases in Ankara and nearby cities in Turkey: an 11-year retrospective analysis.

    PubMed

    Kır, M Ziya; Öztürk, Gülfer; Gürler, Mukaddes; Karaarslan, Bekir; Erden, Gönül; Karapirli, Mustafa; Akyol, Ömer

    2013-05-01

    Since they are available in open markets and pharmacies, pesticides have been widely used all over the country. (Un)intentional poisoning with these compounds is one of the most common causes of chemical poisoning, especially in rural agricultural areas. Pesticide poisonings reported by various countries showed that it is a worldwide health problem with 250,000-370,000 associated deaths each year. In this study, medico-legal deaths between the years 2001 and 2011 in Ankara and nearby cities in Turkey were investigated retrospectively. The autopsies were partly carried out by Ankara Branch of Council of Forensic Medicine. Data were collected from reports of the Morgue Department whose toxicological analyses were performed in the Chemistry Department. The data revealed that 70 cases out of 10,720 autopsied ones had been attributed to fatal pesticide poisoning. The age range was 1-80 years (mean ± SD, 41.33 ± 17.42 years). Most of the cases (60%) were reported from Ankara. Insecticides were the most common (94%) cause of fatal pesticide poisonings, most of them (63%) being organophosphate insecticides. The percentages of pesticide-induced deaths are quite high in our society and should therefore not be underestimated. Accordingly, intensive efforts to reduce occupational and intentional pesticide poisonings are urgently needed in Ankara and nearby cities.

  18. Modified Vaccinia Ankara Virus Vaccination Provides Long-Term Protection against Nasal Rabbitpox Virus Challenge.

    PubMed

    Jones, Dorothy I; McGee, Charles E; Sample, Christopher J; Sempowski, Gregory D; Pickup, David J; Staats, Herman F

    2016-07-01

    Modified vaccinia Ankara virus (MVA) is a smallpox vaccine candidate. This study was performed to determine if MVA vaccination provides long-term protection against rabbitpox virus (RPXV) challenge, an animal model of smallpox. Two doses of MVA provided 100% protection against a lethal intranasal RPXV challenge administered 9 months after vaccination.

  19. Service Quality of State Universities in Turkey: The Case of Ankara

    ERIC Educational Resources Information Center

    Eres, Figen

    2011-01-01

    The aim of this study is determine the service quality perceptions of students being educated at state universities in Ankara. The sample of the study is composed of final grade students of faculties of Economics and Administrative Sciences. The sample of the study is composed of a total of randomly selected students. There were 416 returned…

  20. Modified Vaccinia Ankara Virus Vaccination Provides Long-Term Protection against Nasal Rabbitpox Virus Challenge

    PubMed Central

    Jones, Dorothy I.; McGee, Charles E.; Sample, Christopher J.; Sempowski, Gregory D.; Pickup, David J.

    2016-01-01

    Modified vaccinia Ankara virus (MVA) is a smallpox vaccine candidate. This study was performed to determine if MVA vaccination provides long-term protection against rabbitpox virus (RPXV) challenge, an animal model of smallpox. Two doses of MVA provided 100% protection against a lethal intranasal RPXV challenge administered 9 months after vaccination. PMID:27146001

  1. Image of Turkish Basic Schools: A Reflection from the Province of Ankara

    ERIC Educational Resources Information Center

    Eres, Figen

    2011-01-01

    The purpose of this study was to investigate the organizational image of basic schools in Turkey, a rapidly developing nation that has been investing significantly in education. Participants were 730 residents of Ankara province in the Golbasi district. The participants were selected using a cluster sampling methodology. Data were collected…

  2. Middle School Students' Perceptions of the Quality of School Life in Ankara

    ERIC Educational Resources Information Center

    Eres, Figen; Bilasa, Pinar

    2016-01-01

    The aim of this research is to measure the perception of middle school students in Ankara regarding the quality of school life. According to the findings obtained, the students have moderate level perceptions about the quality of school life. Their perceptions about sub-dimensions vary. While the students have the highest perceptions about…

  3. Life cycle assessment of municipal solid waste management methods: Ankara case study.

    PubMed

    Ozeler, D; Yetiş, U; Demirer, G N

    2006-04-01

    Different solid waste management system scenarios were developed and compared for the Municipal Solid Waste Management System of Ankara by using the life cycle assessment (LCA) methodology. The solid waste management methods considered in the scenarios were collection and transportation of wastes, source reduction, Material Recovery Facility (MRF)/Transfer Stations (TS), incineration, anaerobic digestion and landfilling. The goal of the study was to determine the most environmentally friendly option of MSWM system for Ankara. The functional unit of the study was the amount of solid waste generated in the system area of concern, which are the districts of Ankara. The life cycle inventory analysis was carried out by IWM Model-1. The inputs and outputs of each management stage were defined and the inventory emissions calculated by the model were classified in to impact categories; non-renewable energy sources exhausting potential, final solid waste as hazardous and non-hazardous, global warming, acidification, eutrophication and human toxicity. The impacts were quantified with the weighing factors of each category to develop the environmental profiles of each scenario. In most of the categories, Source Reduction Scenario was found to be the most feasible management method, except the global warming category. The lowest contribution to GWP was calculated for the anaerobic digestion process. In the interpretation and improvement assessment stage, the results were further evaluated and recommendations were made to improve the current solid waste management system of Ankara.

  4. Perspectives on ... An Evaluation of Faculty Use of the Digital Library at Ankara University, Turkey

    ERIC Educational Resources Information Center

    Atilgan, Dogan; Bayram, Ozlem

    2006-01-01

    New consortial buying models have dramatically increased the availability of online resources, particularly journal articles, in the universities and technical institutes of developing countries. The degree of acceptance and pattern of use of such materials is of great interest to library collection development. Ankara University surveyed faculty…

  5. Internet Use Habits of Students of the Department of Information Management, Hacettepe University, Ankara

    ERIC Educational Resources Information Center

    Ucak, Nazan Ozenc

    2007-01-01

    The frequency and other characteristics of Internet use of students studying at the Department of Information Management at Hacettep University in Ankara, Turkey, are examined. According to the findings, students prefer electronic media to printed media, they find the easy accessibility of the information more important than the other qualities,…

  6. Internet Use Habits of Students of the Department of Information Management, Hacettepe University, Ankara

    ERIC Educational Resources Information Center

    Ucak, Nazan Ozenc

    2007-01-01

    The frequency and other characteristics of Internet use of students studying at the Department of Information Management at Hacettep University in Ankara, Turkey, are examined. According to the findings, students prefer electronic media to printed media, they find the easy accessibility of the information more important than the other qualities,…

  7. Service Quality of State Universities in Turkey: The Case of Ankara

    ERIC Educational Resources Information Center

    Eres, Figen

    2011-01-01

    The aim of this study is determine the service quality perceptions of students being educated at state universities in Ankara. The sample of the study is composed of final grade students of faculties of Economics and Administrative Sciences. The sample of the study is composed of a total of randomly selected students. There were 416 returned…

  8. Prevalence of restless legs syndrome in Ankara, Turkey: an analysis of diagnostic criteria and awareness.

    PubMed

    Yilmaz, Nesrin Helvaci; Akbostanci, Muhittin Cenk; Oto, Aycan; Aykac, Ozlem

    2013-09-01

    The aim of this study was threefold: (1) to investigate the prevalence of restless legs syndrome (RLS), in Ankara, Turkey; (2) to determine the predictive values of diagnostic criteria; and (3) to determine the frequency of physician referrals and the frequency of getting the correct diagnosis. A total of 815 individuals, from randomly selected addresses, above the age of 15, were reached using the questionnaire composed of the four diagnostic criteria. Individuals who responded by answering 'yes' for at least one question were interviewed by neurologists for the diagnosis of RLS. Frequency of physician referrals and frequency of getting the correct diagnosis of RLS were also determined for patients getting the final diagnoses of RLS. Prevalence of RLS in Ankara was 5.52 %; 41.0 % of the individuals diagnosed with RLS had replied 'yes' to either one, two or three questions asked by interviewers. However, only 21.3 % of individuals who replied 'yes' to all four questions received the diagnosis of RLS. Among the patients who had the final diagnosis of RLS, 25.7 % had referred to a physician for the symptoms and 22.2 % got the correct diagnosis. The RLS prevalence in Ankara was somewhere between Western and Far East countries compatible with the geographical location. Diagnostic criteria may not be fully predictive when applied by non-physician pollsters. Physician's probability of correctly diagnosing RLS is still low.

  9. Prevalence of obesity and associated risk factors among adolescents in Ankara, Turkey.

    PubMed

    Ercan, Sırma; Dallar, Yıldız Bilge; Önen, Serdar; Engiz, Özlem

    2012-12-01

    The purpose of this study was to investigate the prevalence of and the risk factors associated with obesity among adolescents in Ankara, Turkey. The study was conducted in 26 schools in Ankara during the time period from September 2010 to March 2011. A total of 8848 adolescents aged 11-18 years were chosen using a population-based stratified cluster sampling method. Body mass index (BMI) of the participants was compared with the BMI references for Turkish children and adolescents to estimate the prevalence of overweight and obesity. A standardized questionnaire aiming to determine the sociodemographic characteristics, computer use, television (TV) watching, physical activity, and presence of obesity in the family was applied to the study group. The results showed that the overall prevalence of obesity among adolescents was 7.7% (8.4 % for females and 7.0% for males). It was observed that BMI increased as computer use increased. A greater proportion of the overweight and obese adolescents watched TV and use computer for more than 2 hours/day as compared to their normal-weight counterparts. The normal-weight subjects were found to show a higher participation in regular physical activity. Obesity prevalence among the families of obese adolescents was 56.5%. The prevalence of adolescent obesity in Ankara, Turkey is lower as compared to many European countries and to the United States. Computer use, watching TV, physical activity and family factors are important risk factors for obesity.

  10. Sensitization to Alternaria and Cladosporium in patients with respiratory allergy and outdoor counts of mold spores in Ankara atmosphere, Turkey.

    PubMed

    Bavbek, Sevim; Erkekol, Ferda Oner; Ceter, Talip; Mungan, Dilşad; Ozer, Faruk; Pinar, Münevver; Misirligil, Zeynep

    2006-08-01

    Sensitization to Alternaria and Cladosporium has been reported to be 3% to 30% in European countries. However, in Turkey, there is limited data about the prevalence of sensitization to these molds and the intensity of the two mold spores in Ankara atmosphere. This study was designed to evaluate the sensitization to Alternaria and Cladosporium in patients with respiratory allergy in Ankara and also the concentration of the two molds in Ankara atmosphere. Allergic rhinitis and asthma patients living in Ankara were included in the study. Demographic and diagnostic data of the patients were recorded. A skin prick test with extracts supplied by three different laboratories was used to evaluate the sensitization to Alternaria and Cladosporium. Mold spores were measured using a Burkard 7-day recording volumetric spore trap in Ankara atmosphere during a year. Overall sensitization to the two molds was found to be 14.8%, and isolated Alternaria or Cladosporiumsensitization was 3%. Considering the positive reaction to at least one of the three suppliers, the sensitization rate was 11.9% and 8.1% for Alternaria and Cladosporium, respectively. Cochran's Q homogenization test demonstrated that the positive and negative reaction were not homogeneous among three laboratories. The total number of mold spores in Ankara atmosphere was 429,264 spores/m3 of which 75.5% and 6% were constituted by Cladosporium and Alternaria, respectively. The prevalence of Cladosporium and Alternaria sensitization in respiratory allergy patients is quite similar to European countries; however, our data indicate that commercial mold extracts should be standardized to establish the real sensitization rates. Additionally, considering the great numbers of these mold spores in Ankara atmosphere, long-term follow-up studies are needed to evaluate the relationship between the mold load and sensitization patterns.

  11. Prevalence of Obesity and Associated Risk Factors Among Adolescents in Ankara, Turkey

    PubMed Central

    Ercan, Sırma; Dallar, Yıldız Bilge; Önen, Serdar; Engiz, Özlem

    2012-01-01

    Objective: The purpose of this study was to investigate the prevalence of and the risk factors associated with obesity among adolescents in Ankara, Turkey. Methods: The study was conducted in 26 schools in Ankara during the time period from September 2010 to March 2011. A total of 8848 adolescents aged 11-18 years were chosen using a population-based stratified cluster sampling method. Body mass index (BMI) of the participants was compared with the BMI references for Turkish children and adolescents to estimate the prevalence of overweight and obesity. A standardized questionnaire aiming to determine the sociodemographic characteristics, computer use, television (TV) watching, physical activity, and presence of obesity in the family was applied to the study group. Results: The results showed that the overall prevalence of obesity among adolescents was 7.7% (8.4 % for females and 7.0% for males). It was observed that BMI increased as computer use increased. A greater proportion of the overweight and obese adolescents watched TV and use computer for more than 2 hours/day as compared to their normal-weight counterparts. The normal-weight subjects were found to show a higher participation in regular physical activity. Obesity prevalence among the families of obese adolescents was 56.5%. Conclusions: The prevalence of adolescent obesity in Ankara, Turkey is lower as compared to many European countries and to the United States. Computer use, watching TV, physical activity and family factors are important risk factors for obesity. Conflict of interest:None declared. PMID:23149433

  12. Growth of children living in the outskirts of Ankara: impact of low socio-economic status.

    PubMed

    Gültekin, Timur; Hauspie, Roland; Susanne, Charles; Güleç, Erksin

    2006-01-01

    Most studies of the growth of Turkish schoolchildren are limited to large cities and to subjects from high socio-economic background. Very little is known about growth and development of rural, suburban and low socio-economic children in Turkey. The purpose of this study is to compare height and weight of school-aged children of low socio-economic background with available growth data from high socio-economic strata, and to verify the possible influences of three socio-demographic parameters on their growth. The sample consisted of 1,052 girls and 1,223 boys, aged between 7-17 years, living in the outskirts of Ankara, a suburban area of poor socio-economic background. Centile distributions for height and weight were estimated by the LMS-method. ANOVA and Student's t-test were used to compare mean z-scores for height and weight among the various categories of the socio-demographic parameters. Children living in the outskirts of Ankara have lower mean values for height and weight when compared with growth data of upper socio-economic strata children. The differences were most pronounced during adolescence. Skinfolds were higher in girls than in boys at all ages (largest p = 0.007). There was no clear relationship between growth and the number of siblings, the number of rooms in the house, the mother's and father's education, and the father's professional status (p > 0.05), except for the height of girls (p < 0.05). It is suggested that the lower growth status of children living in the outskirts of Ankara is attributable to the poor socio-economic status of this suburban population, which has not changed over the past decades. It is postulated that the growth impairment during adolescence might be due to a reduced tempo of growth in these children.

  13. Protective Efficacy of Recombinant Modified Vaccinia Virus Ankara Delivering Middle East Respiratory Syndrome Coronavirus Spike Glycoprotein.

    PubMed

    Volz, Asisa; Kupke, Alexandra; Song, Fei; Jany, Sylvia; Fux, Robert; Shams-Eldin, Hosam; Schmidt, Jörg; Becker, Christin; Eickmann, Markus; Becker, Stephan; Sutter, Gerd

    2015-08-01

    Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory disease in humans. We tested a recombinant modified vaccinia virus Ankara (MVA) vaccine expressing full-length MERS-CoV spike (S) glycoprotein by immunizing BALB/c mice with either intramuscular or subcutaneous regimens. In all cases, MVA-MERS-S induced MERS-CoV-specific CD8(+) T cells and virus-neutralizing antibodies. Vaccinated mice were protected against MERS-CoV challenge infection after transduction with the human dipeptidyl peptidase 4 receptor. This MERS-CoV infection model demonstrates the safety and efficacy of the candidate vaccine.

  14. Photometric calibration of T40 telescope system at Ankara University Kreiken Observatory (AUKR)

    NASA Astrophysics Data System (ADS)

    Karakuş, O.; Ekmekçi, F.

    2017-07-01

    We aim to present the photometric calibration of T40 telescope system at Ankara University Kreiken Observatory(AUKR) in the Johnson BVRI bands system through CCD observations of selected Landolt stars on the clearest 11 nights. Ten more stars with a magnitude of V< 11 were also observed in order to check up on standard transformation coefficients. Using these coefficients, we present standard brightness and color magnitudes for these 10 selected stars. These standard brightness values of these 10 stars are also compared with the previously published ones. It is clearly seen that the calibration results are sufficiently reliable.

  15. The seroprevalences of HBs Ag and anti-HCV in pregnant women in Ankara.

    PubMed

    Altinbas, Sibel; Erdogan, Mine; Danişman, Nuri

    2010-02-01

    In the previous decade, the prevalence of HBs-Ag positivity and the anti-HCV positivity declined in Turkey. We aimed to investigate the prevalences of HBs Ag and anti-HCV positivity in pregnant women in Ankara, the capital city of Turkey, while the vertical transmission should be important way of HBV and HCV transmission. HBs-Ag positivity was determined 2.8% (102) out of 4,700 pregnant women, and 0.1% (6) out of them were positive for anti-HCV. The prevalences of HBs Ag and anti-HCV were both similar to the rate of that seen in western region of Turkey.

  16. A test of Hirschi's social bonding theory: juvenile delinquency in the high schools of Ankara, Turkey.

    PubMed

    Ozbay, Ozden; Ozcan, Yusuf Ziya

    2006-12-01

    Travis Hirschi's social bonding theory has mostly been tested in the West. In this study, the theory is tested on juvenile delinquency in a developing country, Turkey. Data were gathered from 1,710 high school students in Ankara by using two-stage stratified cluster sampling. Factor analysis was employed to determine the dimensions of juvenile delinquency (assault, school delinquency, and public disturbance), and regression analysis was used to test the theory. Similar to some other traditional societies, the social bonding theory plays an important role in the explanation of juvenile delinquency in Turkey.

  17. Effects of physical environment on the stress levels of hemodialysis nurses in Ankara Turkey.

    PubMed

    Uğur, Sultan; Acuner, Ahmet M; Göktaş, Bayram; Senoğlu, Birdal

    2007-08-01

    This study has been planned and executed as a field study for identifying the effect of physical environment on the stress levels of hemodialysis nurses who work in the official and private hemodialysis centers in the capital city of Turkey, Ankara (n=161). According to the results obtained from the study, it has been seen that "education level" and "institution of employment" of the hemodialysis nurses are significantly related with the stress levels of the hemodialysis nurses. Nurses' age, marital status, number of children, occupational seniority, years of working, employment status, husbands' occupation and husbands' educational levels are not significantly related with their stress levels.

  18. Discrimination against teenagers in the mall environment: a case from Ankara, Turkey.

    PubMed

    Mugan, Guliz; Erkip, Feyzan

    2009-01-01

    Teenagers spend much of their leisure time at shopping malls which is a result of factors such as parental constraints due to the incivility of the streets, financial dependence, and limited financial resources. Migros, a shopping mall in Ankara was chosen as the site for this research with the main purpose of studying discrimination patterns against teenagers in the mall environment. The research was carried out through observation and in-depth interviews with 104 teenagers. Results indicate that, although they have some complaints, most of the teenagers do not perceive discrimination in the mall, unlike their foreign counterparts.

  19. Feasibility and acceptability of a text messaging-based smoking cessation program in ankara, Turkey.

    PubMed

    Ybarra, Michele L; Holtrop, Jodi S; Bağci Bosi, A Tülay; Bilir, Nazmi; Korchmaros, Josephine D; Salih Emri, A K

    2013-08-01

    Data from high-income countries suggest that cell phone-based smoking cessation programs have the potential to affect cessation rates. There is a paucity of research, however, about the feasibility of cell phone-based smoking cessation programs in lower income countries that have higher smoking prevalence rates. A one-arm feasibility and acceptability pilot study of SMS Turkey, a text messaging-based smoking cessation program, was conducted in Ankara, the capital of Turkey. The authors recruited 75 daily smokers who were seriously thinking about quitting in the subsequent 30 days into the 6-week SMS Turkey program. Recruitment was completed in 4 months. Participant retention was high: Almost all (96%) completed the program, and 84% provided 12-week follow-up data. Most (89%) of the respondents who completed the 4-week follow-up measures (n = 38, 51%) said that the text messages were easy to understand and referred to what they were experiencing and feeling during the quitting process (78%). On the basis of intention to treat, 13% of participants (n = 10) reported, at 12-week follow-up, continuous abstinence since their quit date, confirmed by carbon monoxide readings. The cell phone text messaging-based smoking cessation intervention appears feasible and acceptable in Ankara, Turkey.

  20. Levels and sources of polychlorinated biphenyls in Ankara creek sediments, Turkey.

    PubMed

    Ozyürek, Nazan Akduman; Gedik, Kadir; Siltu, Esra; Imamoğlu, Ipek

    2013-01-01

    The spatial distribution, degree of pollution and major sources of polychlorinated biphenyls (PCBs) were evaluated in surficial sediments of Ankara Creek, located in the capital of Turkey and serving as one of the tributaries in the third largest watershed in Turkey. Sediment ΣPCB concentrations analyzed on Aroclor and congener basis (seven indicator congeners) range from 5.5 to 777.6 ng g(-1) and 3.7 to 743.3 ng g(-1) dw as Aroclor and congener based concentrations, respectively. High concentrations of ΣPCBs were observed in the samples located at the downstream sections of the Creek, after discharge from Ankara municipal wastewater treatment plant. Using a chemical mass balance receptor model (CMB), major sources of PCBs affecting the sediments were investigated. The CMB model identified Aroclor 1254 and 1260 to be the major PCB sources affecting sediments. The potential sources for the PCBs were briefly discussed in terms of their use in various industrial applications.

  1. Sensitivity and specificity of Ankara University Cerebral Dominance Inventory in comparison with the Wada test.

    PubMed

    Yılmaz, Nesrin Helvacı; Bingol, Ayse Petek

    2014-03-01

    We aimed to examine the sensitivity and specificity of the Ankara University Cerebral Dominance Inventory (AUCDI) in determining left cerebral dominance compared with the Wada test. The AUCDI and Wada test were applied to 49 patients referred to Ankara University for epilepsy surgery. Hand, foot and 'total' preference scores were specified according to the results of the inventory. Thirty-eight of the patients had left cerebral dominance and 11 had atypical cerebral dominance for language. 86 % of the patients were right-handed and 43 % were right-footed. When compared with the results of the Wada test, the sensitivity of the AUCDI for each 'total preference', and hand and foot preference was 90, 95 and 50 % and specificity was 46, 46 and 82 %, respectively. The percentage of right-footed patients was low when compared with the other studies. This difference might result from the method used for assessing foot preference by the actual demonstration of the task rather than just asking about the performance. The AUCDI was found to be sensitive in terms of 'total preference' and hand preference, and specific in terms of foot preference for determining the left hemisphere dominance in patients preferring the right side. It was a cheap and noninvasive alternative to the Wada test, appropriate for clinical bedside evaluation.

  2. Minimum prick test panel for adult patients with asthma and rhinitis in Ankara, Turkey.

    PubMed

    Comert, Sule; Demir, A Ugur; Karakaya, Gul; Kalyoncu, A Fuat

    2014-05-01

    Determination of the number and type of allergens needed to be tested in epidemiological studies is important in order to identify most of the sensitized subjects with a cost-effective approach. This study aimed to investigate the minimum skin prick test panel for the identification of at least 95% of the sensitized subjects with symptoms of asthma and/or allergic rhinitis (AR) in Ankara, Turkey. Skin prick test results of 7492 patients who were referred to our outpatient clinic with clinical symptoms of asthma and/or AR between 1991 and 2005 were evaluated retrospectively. Seven allergens were tested in all and 13 allergens in 4202 patients. The allergen group needed for detection of 95% of the sensitized subjects was determined for both the 7 and 13 allergen panels. The study protocol was approved by the local ethics committee of Hacettepe University. The atopy prevalences in the whole study population and in 4202 patients tested with the 13 allergen panel were calculated as 32.2% and 42.6%, respectively. Three allergens (Phleum pratense, Dermatophagoides pteronyssinus and Artemisia vulgaris) within the 7 allergen panel were adequate for the identification of at least 95% of the sensitized subjects. Olea europae was added to the previous three allergens when the 13 allergen panel was applied. Three to four allergens are sufficient for identification at least 95% of sensitized subjects with asthma and/or AR in Ankara, Turkey.

  3. The quality of groundwater for certain chemicals in military fields in Ankara.

    PubMed

    Bakir, Bilal; Hacim, Ali Kasim; Güleç, Mahir; Ozer, Mustafa; Hasde, Metin

    2003-12-01

    The goal of this study was to determine the quality of groundwater for certain chemicals from all wells for the military units in Ankara (the capital city of Turkey) to evaluate special situations like a nuclear, biological, and chemical attack. The quality of underground water has been evaluated chemically by examining 34 different water specimens. Various chemical parameters and heavy metals have been assessed in these samples by using an ion meter and atomic absorption spectrophotometer. Nitrate and chloride have been assessed at a higher rate with the levels exceeding maximum contaminant levels. Mercury, arsenic, aluminum, iron, conductivity, and salinity have also had levels exceeding maximum contaminant levels for each of them according to the levels set by the World Health Organization. This study has given us some powerful clues that underground water in Ankara is at a growing risk to be contaminated mainly with nitrate and chloride. Although more detailed investigations are necessary for a better evaluation, it is clear that preventive measures should be implemented or improved.

  4. Modified Vaccinia Virus Ankara: History, Value in Basic Research, and Current Perspectives for Vaccine Development.

    PubMed

    Volz, A; Sutter, G

    2017-01-01

    Safety tested Modified Vaccinia virus Ankara (MVA) is licensed as third-generation vaccine against smallpox and serves as a potent vector system for development of new candidate vaccines against infectious diseases and cancer. Historically, MVA was developed by serial tissue culture passage in primary chicken cells of vaccinia virus strain Ankara, and clinically used to avoid the undesirable side effects of conventional smallpox vaccination. Adapted to growth in avian cells MVA lost the ability to replicate in mammalian hosts and lacks many of the genes orthopoxviruses use to conquer their host (cell) environment. As a biologically well-characterized mutant virus, MVA facilitates fundamental research to elucidate the functions of poxvirus host-interaction factors. As extremely safe viral vectors MVA vaccines have been found immunogenic and protective in various preclinical infection models. Multiple recombinant MVA currently undergo clinical testing for vaccination against human immunodeficiency viruses, Mycobacterium tuberculosis or Plasmodium falciparum. The versatility of the MVA vector vaccine platform is readily demonstrated by the swift development of experimental vaccines for immunization against emerging infections such as the Middle East Respiratory Syndrome. Recent advances include promising results from the clinical testing of recombinant MVA-producing antigens of highly pathogenic avian influenza virus H5N1 or Ebola virus. This review summarizes our current knowledge about MVA as a unique strain of vaccinia virus, and discusses the prospects of exploiting this virus as research tool in poxvirus biology or as safe viral vector vaccine to challenge existing and future bottlenecks in vaccinology.

  5. Environmental Attitudes of the 6th Grade Students from Rural and Urban Areas: A Case Study for Ankara

    ERIC Educational Resources Information Center

    Tuncer, Gaye; Sungur, Semra; Tekkaya, Ceren; Ertepinar, Hamide

    2004-01-01

    This study investigated environmental attitude of 6th grade students living in rural and urban areas in Ankara. Hundred and thirty-eight students were selected from four schools located in these areas. A 45-item questionnaire consisting of four dimensions was used to measure students' environmental attitude. Results of the study revealed that,…

  6. An Assessment of School-to-Work Transition in a Vocational and Technical High School in Ankara, Turkey.

    ERIC Educational Resources Information Center

    Olkun, Sinan; Simsek, Hasan

    The school-to-work transition process of a vocational-technical high school in Ankara, Turkey was assessed from the perspectives of graduates and employers. Data were collected through interviews with 126 of the school's graduates and 18 of their employers. Results showed that in students' vocational choice, future employment anxiety was more…

  7. 78 FR 76821 - Executive-Led U.S.-Turkey Healthcare Trade Mission to Ankara, Istanbul, and Izmir

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-19

    ...The United States Department of Commerce, International Trade Administration is amending the Notice published at 78 FR 18318 (March 26, 2013), regarding the Executive-Led U.S.-Turkey Healthcare Trade Mission to Ankara, Istanbul, and Izmir to extend the date of the application deadline to February 6, 2014, and to amend the selection criteria for the applications received from midnight December......

  8. Toxoplasma gondii RH Ankara: production of evolving tachyzoites using a novel cell culture method.

    PubMed

    Değirmenci, Aysu; Döşkaya, Mert; Caner, Ayşe; Ciçek, Candan; Korkmaz, Metin; Gürüz, Yüksel; Uner, Ahmet

    2011-05-01

    Toxoplasma gondii is one of the most researched parasite due to its easy growth both in vitro and in vivo. Tachyzoites, derived from mouse or rat peritoneum encounters ethical and economical problems when used for research or diagnostic purposes. Currently, research has focused on determining the most suitable cell culture environment to reach highest amount of viable tachyzoites with least host cell contamination. However, gene expression changes that take place throughout the adaptation of evolving T. gondii strains to continuous cell cultures appear as a problem. The present study aimed to determine a novel cell culture strategy for T. gondii RH Ankara strain tachyzoites to harvest abundant tachyzoites with least host cell contamination and minimal antigenic variation at predetermined dates to use as an antigen source in serological assays that will facilitate reduction in animal use. To achieve this purpose, T. gondii RH Ankara strain tachyzoites were incubated with HeLa cell at different ratios for two or three days. In all flasks incubated for two days, viability rate reached to 100% and HeLa cell contamination decreased to levels between 0.12-0.5×10(6)/ml. In the flasks with HeLa-tachyzoite ratio 1/8, the tachyzoite yield and viability ratio were 3×10(6)/ml and 100%, respectively, with accompanying 10 fold decrease (0.12×10(6)/ml) in HeLa contamination. During continuous production, highest tachyzoite yield was obtained from the first passage (3.55×10(6)/ml) and until the end of third subculture viability rates and HeLa cell contaminations were between 98.2-99.4% and 0.31-0.37×10(6)/ml, respectively. ELISA, IFA and Western blot analyses showed that the quality, specificity and sensitivity of the antigen harvested from the first passage of cell culture performed at two days intervals were comparable to the antigen harvested from mice and decreased in the following subcultures. Overall, these results demonstrated that T. gondii RH Ankara strain is still

  9. Vitamin D Levels of Anesthesia Personnel, Office Workers and Outdoor Workers in Ankara, Turkey.

    PubMed

    Erden, Gonul; Ozdemir, Seyda; Ozturk, Gulfer; Erden, Aydin; Kara, Duygu; Isik, Serhat; Ergil, Jülide; Vural, Cagil; Arzuhal, A Ercan

    2016-01-01

    Vitamin D deficiency or insufficiency is a highly prevalent condition worldwide. Anesthesia providers or support personnel working in operating rooms might be considered at increased risk of vitamin D deficiency. There is a small amount of information about 25(OH)D levels in people who work mainly indoors as an operating room. This study aimed to investigate whether there was a higher vitamin D insufficiency or deficiency rate among anesthesia personnel working indoors when compared with personnel working in an office or outdoors in Ankara, Turkey (39 degrees North, 32 degrees East). This study consisted of 125 volunteer anesthesia personnel and 60 subjects as control groups (30 outdoor workers and 30 office workers). All of the individuals completed a questionnaire. Serum levels of total 25(OH)D were measured by a chemiluminescent immunoassay method. 74.4% of anesthesia personnel and 76.6% of control group 1 (outdoor workers) and 76.6% of control group 2 (office workers) had serum 25(OH)D concentrations < 10 ng/mL. 20.8% of anesthesia personnel and 23.4% of control group 1 and 23.4% of control group 2 had serum 25(OH)D concentrations levels 10 - 20 ng/mL. 4.8% of anesthesia personnel had serum 25(OH)D concentration levels 21 - 30 ng/mL. There was no significant difference in the mean serum 25(OH)D level between the groups (Anesthesia group: 8.98 ± 4.89 ng/mL, Control group 1: 8.18 ± 2.39 ng/mL, Control group 2: 8.37 ± 3.01 ng/mL) (p > 0.05). To our knowledge the present study is the first study to investigate the comparison of vitamin D levels of anesthesia personnel with outdoor and office workers. Our findings alarmingly emphasize that vitamin D deficiency is very common at the end of winter in Ankara, regardless of being anesthesia personnel in operating room or a worker in office or an outdoor worker. Vitamin D supplementation may be suggested in all groups in Ankara.

  10. Neonatal outcomes of Syrian refugees delivered in a tertiary hospital in Ankara, Turkey.

    PubMed

    Büyüktiryaki, Mehmet; Canpolat, Fuat Emre; Alyamaç Dizdar, Evrim; Okur, Nilüfer; Kadıoğlu Şimşek, Gülsüm

    2015-01-01

    We retrospectively reviewed the medical records of all Syrian immigrants from the TurkishSyrian border who delivered the Zekai Tahir Burak Maternity and Teaching Hospital Neonatal Intensive Care Unit (NICU) in Ankara, Turkey. Between January 2013 and December 2014 a total of 36,346 women gave birth at this center. Of these, 457 women were Syrian immigrants, comprising 1.2 % (457/36,346) of all deliveries. The number of births among Syrian refugees in Turkey appears to be increasing. Further research is needed to understand the relative morbidity of babies born to Syrian refugees compared to the local population, as well as the economic impact on facilities treating these cases.

  11. Emergency peripartum hysterectomy: experience of a major referral hospital in Ankara, Turkey.

    PubMed

    Danisman, N; Baser, E; Togrul, C; Kaymak, O; Tandogan, M; Gungor, T

    2015-01-01

    The objective of this study was to report and discuss the incidence, clinical characteristics and outcomes of emergency peripartum hysterectomies (EPH) performed at a tertiary referral hospital in Ankara, Turkey. The labour and delivery unit database was retrospectively analysed for emergency peripartum hysterectomies (EPH) performed between January 2008 and January 2013, at the Zekai Tahir Burak Women's Health Training and Research Hospital. A total of 92,887 deliveries were accomplished within the study period. EPH was performed in 48 cases, and the incidence was 0.51 in 1,000. Abnormal placentation was the most common indication for EPH. Most common complications were blood product transfusion and postoperative fever. None of the cases resulted in maternal mortality. Serious maternal complication rates were relatively low in our study. In cases that are unresponsive to initial conservative measures, EPH should be performed without delay and a multidisciplinary team approach should be conducted whenever possible.

  12. Non-plaque-forming virions of Modified Vaccinia virus Ankara express viral genes.

    PubMed

    Lülf, Anna-Theresa; Freudenstein, Astrid; Marr, Lisa; Sutter, Gerd; Volz, Asisa

    2016-12-01

    In cell culture infections with vaccinia virus the number of counted virus particles is substantially higher than the number of plaques obtained by titration. We found that standard vaccine preparations of recombinant Modified Vaccinia virus Ankara produce only about 20-30% plaque-forming virions in fully permissive cell cultures. To evaluate the biological activity of the non-plaque-forming particles, we generated recombinant viruses expressing fluorescent reporter proteins under transcriptional control of specific viral early and late promoters. Live cell imaging and automated counting by fluorescent microscopy indicated that virtually all virus particles can enter cells and switch on viral gene expression. Although most of the non-plaque-forming infections are arrested at the level of viral early gene expression, we detected activation of late viral transcription in 10-20% of single infected cells. Thus, non-plaque-forming particles are biologically active, and likely contribute to the immunogenicity of vaccinia virus vaccines.

  13. Generation and evaluation of a recombinant modified vaccinia virus Ankara vaccine for rabies.

    PubMed

    Weyer, Jacqueline; Rupprecht, Charles E; Mans, Janet; Viljoen, Gerrit J; Nel, Louis H

    2007-05-22

    Modified vaccinia virus Ankara (MVA) has become a vaccine vector of choice for recombinant vaccine development. A MVA-based rabies vaccine would be advantageous for use as a vaccine for dogs (and wildlife), particularly if it proves innocuous and efficacious by the oral route. Here, the generation and immunological testing of a recombinant MVA expressing a rabies virus glycoprotein gene is described. In a murine model, higher dosages of recombinant MVA were needed to induce equivocal immune responses as with Vaccinia Copenhagen or Vaccinia Western Reserve recombinants, when administered by a parenteral route. The MVA recombinant was not immunogenic or efficacious when administered per os in naïve mice. The ability of the recombinant MVA to induce anamnestic responses in dogs and raccoons was also investigated. Recombinant MVA boosted humoral immune responses in these animals when administered peripherally, but not when administered orally.

  14. Environmental Risk Assessment of Clinical Trials Involving Modified Vaccinia Virus Ankara (MVA)-Based Vectors

    PubMed Central

    Goossens, Martine; Pauwels, Katia; Willemarck, Nicolas; Breyer, Didier

    2013-01-01

    The modified vaccinia virus Ankara (MVA) strain, which has been developed as a vaccine against smallpox, is since the nineties widely tested in clinical trials as recombinant vector for vaccination or gene therapy applications. Although MVA is renowned for its safety, several biosafety aspects need to be considered when performing the risk assessment of a recombinant MVA (rMVA). This paper presents the biosafety issues and the main lessons learned from the evaluation of the clinical trials with rMVA performed in Belgium. Factors such as the specific characteristics of the rMVA, the inserted foreign sequences/transgene, its ability for reconversion, recombination and dissemination in the population and the environment are the main points of attention. Measures to prevent or manage identified risks are also discussed. PMID:24397528

  15. Prevalence of Toxocara spp. eggs in the soil of public parks in Ankara, Turkey.

    PubMed

    Oge, S; Oge, H

    2000-02-01

    One hundred and seventy soil samples from forty-six public parks in Ankara area were examined to determine the level of contamination with Toxocara spp. eggs. 30.6% of the 170 soil samples were contaminated with Toxocara spp. eggs. The number of eggs in the positive soil samples varied from 1 to 10. A high proportion of the eggs was fully embryonated. The findings demonstrate the common occurrence of these eggs in locations likely to be important in the transmission of visceral larva migrans. Of 19 fecal collected, 5 (26.3%) contained Toxocara spp. eggs. Eggs of Ancylostomidae, Toxascaris leonina, Trichuris spp., Taenia spp. and Enterobius vermicularis were also recovered from 17.6, 4.1, 2.4, 1.8 and 1.2% of soil samples, respectively.

  16. Pollen counts and their relationship to meteorological factors in Ankara, Turkey during 2005-2008

    NASA Astrophysics Data System (ADS)

    Kizilpinar, Ilginc; Civelek, Ersoy; Tuncer, Ayfer; Dogan, Cahit; Karabulut, Erdem; Sahiner, Umit M.; Yavuz, S. Tolga; Sackesen, Cansin

    2011-07-01

    Pollen plays an important role in the development and exacerbation of allergic diseases. We aimed to investigate the days with highest counts of the most allergenic pollens and to identify the meteorological factors affecting pollen counts in the atmosphere of Ankara, Turkey. Airborne pollen measurements were carried out from 2005 to 2008 with a Burkard volumetric 7-day spore trap. Microscope counts were converted into atmospheric concentrations and expressed as pollen grains/m3. Meteorological parameters were obtained from the State Meteorological Service. All statistical analyses were done with pollen counts obtained from March to October for each year. The percentages of tree, grass and weed pollens were 72.1% ( n = 24,923), 12.8% ( n = 4,433) and 15.1% ( n = 5,219), respectively. The Pinaceae family from tree taxa (39% to 57%) and the Chenopodiaceae/Amaranthaceae family from weed taxa, contributed the highest percentage of pollen (25% to 43%), while from the grass taxa, only the Poaceae family was detected from 2005 to 2008. Poaceae and Chenopodiaceae/Amaranthaceae families, which are the most allergenic pollens, were found in high numbers from May to August in Ankara. In multiple logistic regression analysis, wind speed (OR = 1.18, CI95% = 1.02-1.36, P = 0.023) for tree pollen, daily mean temperature (OR = 1.10, CI95% = 1.04-1.17, P = 0.001) and sunshine hours (OR = 1.15, CI95% = 1.01-1.30, P = 0.033) for grass pollen, and sunshine hours (OR = 3.79, CI95% = 1.03-13.92, P = 0.044) for weed pollen were found as significant risk factors for high pollen count. The pollen calendar and its association with meteorological factors depend mainly on daily temperature, sunshine hours and wind speed, which may help draw the attention of physicians and allergic patients to days with high pollen counts.

  17. Lean Body Mass as a Predictive Value of Hypertension in Young Adults, in Ankara, Turkey

    PubMed Central

    VAZIRI, Yashar; BULDUK, Sidika; SHADMAN, Zhaleh; BULDUK, Emre Ozgur; HEDAYATI, Mehdi; KOC, Haluk; ER, Fatmanur; ERDOGAN, Ceren Suveren

    2015-01-01

    Background: The aim of this study was to assess the predictive capacity of body composition estimated by bioelectrical impedance analysis (BIA) to identify abnormal blood pressure in physical education and sport teaching students in the city of Ankara. Methods: Data for this cross-sectional study were obtained in the city of Ankara in 2014. A total of 133 students aged 20–35 yr participated in this study. Anthropometric measurements were measured. Body composition was assessed by BIA. Physical activity level (PAL) and usual dietary intake were assessed. Pre-hypertension and hypertension were defined, respectively, as BP ≥120 and/or 80, and ≥140 and /or 90 mmHg. Results: More overweight students showed abnormal BP especially SBP (P=0.005 and 0.002, respectively). Age adjusted regression showed significant association between arm circumference (β= 0.176, P 0.044), mid arm muscle circumference (MAMC) (β= 0.235, P 0.007), lean body mass (LBM) (β= 0.238, P 0.006), basal metabolism rate (BMR) (β= 0.219, P 0.012) and SBP and, also, MAMC (β= 0.201, P 0.022), LBM (β= 0.203, P 0.021), BMR (β= 0.189, P 0.030) and DBP. Fat intake was associated with DBP (β= 0.14, P =0.040). Multivariate regression models adjusted for age, BMI, WC and fat intake/kg body weight showed positive association of SBP with MAMC, BMR and LBM (P<0.05). Conclusion: The relationship between blood pressure and body composition in young adults may be associated to LBM and MAMC. LBM or MAMC in this population may be indirect indicators of heart muscle mass and heart pumping power. PMID:26811815

  18. Preliminary Geochemical Data for the Diabase Dykes from the Izmir-Ankara-Erzincan Suture Belt, Central Anatolia

    NASA Astrophysics Data System (ADS)

    Balcı, Uǧur; Sayıt, Kaan

    2017-04-01

    The Izmir-Ankara-Erzincan Suture Belt preserves oceanic and continental fragments originated from the closure of the northern branch of Neotethys. In the Bogazkale area (Central Anatolia), the pieces of the Neotethyan oceanic lithosphere exist in a chaotic manner, forming an ophiolitic mélange. Within the mélange, diabase dykes occur, which are found to cut various types of oceanic lithospheric rocks, including pillow basalts, gabbros and serpentinized ultramafics. We here present the preliminary geochemical results obtained from the diabase dykes and put some constraints on their petrogenesis. The investigated diabase dykes are chiefly composed of plagioclase and a mafic phase, which is clinopyroxene and/or hornblende. A detailed examination reveals two petrographic types on the basis of predominating mafic mineral phase, namely clinopyroxene-dominated Type 1, and hornblende-dominated Type 2. Ophitic to sub-ophitic textures, where lath-shaped plagioclase crystals are enclosed by clinopyroxene, can be observed in almost all Type 1 dykes. In Type 2 samples, altered mafic phases can be seen enclosed within plagioclase crystals, forming poikilitic texture. Polysynthetic twinning is common in plagioclase. Hornblende occasionally displays simple twinning. Both types appear to have been variably affected by low-grade hydrothermal alteration as reflected by the presence of secondary mineral phases, such as chlorite, epidote, prehnite, and actinolite. The whole-rock geochemistry appear to be consistent with the petrographical grouping, revealing distinct immobile trace element systematics for the two types. Both types have basaltic composition with sub-alkaline characteristics (Nb/Y=0.2-0.3 for Type 1; Nb/Y=0.02-0.08 for Type 2). The relatively low MgO contents of the dykes suggest that they do not represent primary magmas, but evolved through fractionation of mafic phases. In the N-MORB normalized diagrams, Type 2 diabases exhibit marked negative Nb anomalies, with HFSE

  19. Screening of quinolone antibiotic residues in chicken meat and beef sold in the markets of Ankara, Turkey.

    PubMed

    Er, Buket; Onurdag, Fatma Kaynak; Demirhan, Burak; Ozgacar, Selda Özgen; Oktem, Aysel Bayhan; Abbasoglu, Ufuk

    2013-08-01

    This study aimed to find the effects of quinolone antibiotics in chicken and beef used in Ankara, Turkey. Total number of 127 chicken and 104 beef meat samples were collected randomly from local markets for analysis. Extraction and determination of quinolones were made by ELISA procedure. One hundred eighteen of 231 (51.1%) examined chicken meat and beef samples were found to contain quinolone antibiotic residue. Among the chicken meat and beef samples, 58 (45.7%) of chicken meat samples and 60 (57.7%) of beef meat samples were positive for quinolones, respectively. The mean levels (±SE) of quinolones were found to be 30.81 ± 0.45 µg/kg and 6.64 ± 1.11 µg/kg in chicken and beef samples, respectively. This study indicated that some chicken and beef meat sold in Ankara contains residues of quinolone antibiotics.

  20. International Conference on Beam-Solid Interactions Held in Ankara, Turkey on April 24-28, 1989

    DTIC Science & Technology

    1989-04-01

    Army RDSG (UK) 16:45-%NumericalModels in-t’aser Processing of’Semiconductors~ A. Aydinli * US Navy ONR (UK) April 26, 1989 Wednesday " British...talks, all being experimental in nature except one theoretical on Numerical Models in Laser Processing of Semiconductors by Prof. A. Aydinli . The...tr Dog. Dr. Atilla Aydinli Hacettepe Cniversitesi Fizik MUhendisliji B61UmU Beytepe, Ankara Phone +90(4)223-0391 Prof.Dr. Giorgio Benedek Univ. degli

  1. Vaccination with recombinant modified vaccinia virus Ankara prevents the onset of intestinal allergy in mice.

    PubMed

    Bohnen, C; Wangorsch, A; Schülke, S; Nakajima-Adachi, H; Hachimura, S; Burggraf, M; Süzer, Y; Schwantes, A; Sutter, G; Waibler, Z; Reese, G; Toda, M; Scheurer, S; Vieths, S

    2013-08-01

    Modified vaccinia virus Ankara (MVA)-encoding antigens are considered as safe vaccine candidates for various infectious diseases in humans. Here, we investigated the immune-modulating properties of MVA-encoding ovalbumin (MVA-OVA) on the allergen-specific immune response. The immune-modulating properties of MVA-OVA were investigated using GM-CSF-differentiated BMDCs from C57BL/6 mice. OVA expression upon MVA-OVA infection of BMDCs was monitored. Activation and maturation markers on viable MVA-OVA-infected mDCs were analyzed by flow cytometry. Secretion of INF-γ, IL-2, and IL-10 was determined in a co-culture of BMDCs infected with wtMVA or MVA-OVA and OVA-specific OT-I CD8(+) and OT-II CD4(+ ) T cells. BALB/c mice were vaccinated with wtMVA, MVA-OVA, or PBS, sensitized to OVA/alum and challenged with a diet containing chicken egg white. OVA-specific IgE, IgG1, and IgG2a and cytokine secretion from mesenteric lymph node (MLN) cells were analyzed. Body weight, body temperature, food uptake, intestinal inflammation, and health condition of mice were monitored. Infection with wtMVA and MVA-OVA induced comparable activation of mDCs. MVA-OVA-infected BMDCs expressed OVA and induced enhanced IFN-γ and IL-2 secretion from OVA-specific CD8(+ ) T cells in comparison with OVA, wtMVA, or OVA plus wtMVA. Prophylactic vaccination with MVA-OVA significantly repressed OVA-specific IgE, whereas OVA-specific IgG2a was induced. MVA-OVA vaccination suppressed TH 2 cytokine production in MLN cells and prevented the onset of allergic symptoms and inflammation in a mouse model of OVA-induced intestinal allergy. Modified vaccinia virus Ankara-ovalbumin (MVA-OVA) vaccination induces a strong OVA-specific TH 1- immune response, likely mediated by the induction of IFN-γ and IgG2a. Finally, MVA-based vaccines need to be evaluated for their therapeutic potential in established allergy models. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  2. A proton irradiation test facility for space research in Ankara, Turkey

    NASA Astrophysics Data System (ADS)

    Gencer, Ayşenur; Yiǧitoǧlu, Merve; Bilge Demirköz, Melahat; Efthymiopoulos, Ilias

    2016-07-01

    Space radiation often affects the electronic components' performance during the mission duration. In order to ensure reliable performance, the components must be tested to at least the expected dose that will be received in space, before the mission. Accelerator facilities are widely used for such irradiation tests around the world. Turkish Atomic Energy Authority (TAEA) has a 15MeV to 30MeV variable proton cyclotron in Ankara and the facility's main purpose is to produce radioisotopes in three different rooms for different target systems. There is also an R&D room which can be used for research purposes. This paper will detail the design and current state of the construction of a beamline to perform Single Event Effect (SEE) tests in Ankara for the first time. ESA ESCC No.25100 Standard Single Event Effect Test Method and Guidelines is being considered for these SEE tests. The proton beam kinetic energy must be between 20MeV and 200MeV according to the standard. While the proton energy is suitable for SEE tests, the beam size must be 15.40cm x 21.55cm and the flux must be between 10 ^{5} p/cm ^{2}/s to at least 10 ^{8} p/cm ^{2}/s according to the standard. The beam size at the entrance of the R&D room is mm-sized and the current is variable between 10μA and 1.2mA. Therefore, a defocusing beam line has been designed to enlarge the beam size and reduce the flux value. The beam line has quadrupole magnets to enlarge the beam size and the collimators and scattering foils are used for flux reduction. This facility will provide proton fluxes between 10 ^{7} p/cm ^{2}/s and 10 ^{10} p/cm ^{2}/s for the area defined in the standard when completed. Also for testing solar cells developed for space, the proton beam energy will be lowered below 10MeV. This project has been funded by Ministry of Development in Turkey and the beam line construction will finish in two years and SEE tests will be performed for the first time in Turkey.

  3. Detrital supply from subduction/accretion complexes to the Eocene-Oligocene post-collisional southern Thrace Basin (NW Turkey and NE Greece)

    NASA Astrophysics Data System (ADS)

    d'Atri, Azzurra; Zuffa, Gian Gaspare; Cavazza, William; Okay, Aral I.; Di Vincenzo, Gianfranco

    2012-01-01

    The Thrace Basin is a large, mostly Eocene-Oligocene post-collisional sedimentary basin which developed following the closure of the Vardar-İzmir-Ankara oceanic domain (latest Cretaceous-Paleocene). Sandstone petrologic data (framework and heavy-mineral analyses) and the synthesis of preexisting and new sedimentological observations along representative stratigraphic sections show that the basin fill of the southern Thrace Basin was mostly derived from the İzmir-Ankara and Biga (?Intra-Pontide) subduction/accretion complexes to the south. Proximal facies consistently show northward paleocurrents whereas most paleocurrent indicators measured downcurrent point to an eastward paleoflow, likely the result of the deflection of primary gravity flows originated along the southern margin of the basin. Detrital contributions from the Rhodopian basement complex to the west are virtually absent within the southern Thrace Basin fill. Conversely, Rhodopes-derived, Eocene proximal facies in northeastern Greece are characterized by a series of coarse-grained fan-deltas prograding eastward and likely feeding the basin-plain turbidites of the depocentral portion of the Thrace basin, now concealed in the subsurface to the north of our study area. Arenites of the southern Thrace Basin are mostly lithic arkoses and arkosic litharenites. Provenance from the İzmir-Ankara and Biga suture zones to the south is characterized by ophiolitic, granitoid/gneissic, low-grade metamorphic, and extrabasinal carbonate rock fragments, as well as by picotite and glaucophane. The application of detailed petrographic observations for discriminating paleo- vs. neovolcanic and penecontemporaneous vs. noncoeval terrigenous sands lead to a substantial revision of the geodynamic interpretation of the Thrace Basin, formerly considered a forearc basin. A significant penecontemporaneous volcanic component is common in the Upper Eocene-Lower Oligocene section and can be related to extensive post

  4. Elements in the Development of a Production Process for Modified Vaccinia Virus Ankara.

    PubMed

    Jordan, Ingo; Lohr, Verena; Genzel, Yvonne; Reichl, Udo; Sandig, Volker

    2013-11-01

    The production of several viral vaccines depends on chicken embryo fibroblasts or embryonated chicken eggs. To replace this logistically demanding substrate, we created continuous anatine suspension cell lines (CR and CR.pIX), developed chemically-defined media, and established production processes for different vaccine viruses. One of the processes investigated in greater detail was developed for modified vaccinia virus Ankara (MVA). MVA is highly attenuated for human recipients and an efficient vector for reactogenic expression of foreign genes. Because direct cell-to-cell spread is one important mechanism for vaccinia virus replication, cultivation of MVA in bioreactors is facilitated if cell aggregates are induced after infection. This dependency may be the mechanism behind our observation that a novel viral genotype (MVA-CR) accumulates with serial passage in suspension cultures. Sequencing of a major part of the genomic DNA of the new strain revealed point mutations in three genes. We hypothesize that these changes confer an advantage because they may allow a greater fraction of MVA-CR viruses to escape the host cells for infection of distant targets. Production and purification of MVA-based vaccines may be simplified by this combination of designed avian cell line, chemically defined media and the novel virus strain.

  5. Assessment of traumatic deaths in a level one trauma center in Ankara, Turkey.

    PubMed

    Arslan, E D; Kaya, E; Sonmez, M; Kavalci, C; Solakoglu, A; Yilmaz, F; Durdu, T; Karakilic, E

    2015-06-01

    Trauma management shows significant progress in last decades. Determining the time and place of deaths indicate where to focus to improve our knowledge about trauma. We conducted this retrospective study from data of trauma victims who were brought to a major tertiary hospital which is a level one trauma center in Ankara, Turkey, and died even if during transport or in the hospital between 1 March 2010 and 1 March 2013. The patients' demographic characteristics, trauma mechanisms, time frames and causes of deaths determined by physicians were recorded. Traumas were grouped as "high energy trauma" (HET) and "low energy trauma" (LET). Falls from ground level were defined as LET. 209 traumatic deaths due to trauma or trauma-related conditions were found in the study period. 161 of 209 (78 %) patients suffered from HET. Motor vehicle collisions (MVC) (56 %) were the most common mechanism of trauma followed by burns (16 %), falls (11 %), gunshots (9 %) and stabs (6 %) in this group and traumatic brain injuries (TBI) (41 %) were the most common cause of death followed by circulatory collapse (22 %) and multi-organ failure (20 %). 36 % of deaths occurred before arrival at hospital, 25 % in the first 24 h of admission, 18 % between 2nd and 7th day and 21 % after first week. Trimodal distribution of traumatic deaths was not valid for all types of injuries and the most important factor to decrease traumatic deaths is still prevention. Also we have to keep on searching to improve our knowledge about trauma management.

  6. Sex and the capital city: the political framing of syphilis and prostitution in early republican Ankara.

    PubMed

    Evered, Emine Ö; Evered, Kyle T

    2013-04-01

    In its initial years, the nascent Turkish republic established the Ministry of Health and Social Assistance in order to promote public health. Beyond simply facilitating its modernizing agenda for the emergent nation-state as it sought to define itself against an Ottoman past, this institution was also geared toward remedying a self-defined population crisis by prioritizing and confronting particular diseases and health conditions. One of the maladies of utmost concern was syphilis. Based upon an analysis of official primary sources, this article engages with how the developing republic distinguished and consequently politically constructed-or framed-the syphilis problem from the vantage of its new forward capital, Ankara. Integral to this project of confronting this sexually transmitted disease, public health officials projected upon both this ailment and their understanding of the suitable means for its treatment their own views of what constituted appropriate sexual practices and relations. In doing so, certain subgroups of the population, especially prostitutes, were particularized as targets for surveillance and policing through regimes of licensing and compulsory medical examinations. Stemming from the state's framing of the disease-and its definition of appropriate sexual practices-this article also examines the subsequent legislative and public health education projects that followed.

  7. A Review of the Scientific Misconduct Inquiry Process, Ankara Chamber of Medicine, Turkey.

    PubMed

    Gökçay, Banu; Arda, Berna

    2016-11-28

    The aim of this study is to review the inquiry process used in scientific misconduct cases in the Ankara Chamber of Medicine between the years 1998 and 2012. The violations of the "Disciplinary Regulations of the Turkish Medical Association" have been examined by keeping the names of the people, institutions, associations and journals secret. In total, 31 files have been studied and 11 of these files have been identified as related to scientific misconduct. The methods of inquiry, the decisions about the need for an investigation process, the types of scientific misconduct, and the adjudication processes have all been reported. Furthermore, the motives of researchers who made allegations, the study approaches of investigators, and the objections to the decisions about guilt and innocence have also been examined. Based on the findings obtained, the reasons for scientific misconduct and the distribution of responsibilities among the people in the inquiry process have been discussed. A major conclusion is the need to standardize the process of conducting inquiries about scientific misconduct cases for the regional chambers of medicine in Turkey.

  8. Natural immunity to Haemophilus influenzae type B in children of Ankara, Turkey.

    PubMed

    Ocaktan, Esin; Ozyurda, Ferda; Akar, Nejat

    2004-06-01

    Haemophilus influenzae type b (Hib) infection has a high morbidity and mortality rate especially in children under 5 years of age. The incidence of Hib disease in Turkey is not known, and Hib vaccine is not included in the National Immunization Program. The aim of this study was to determine the natural immunity to Hib of children 6-60 months of age living in the Park Health Center region of Ankara, Turkey. A total of 270 children were selected by layered random sampling method, and 242 of them (89.6%) participated in the study. A questionnaire was given to the parents of the children who were included in the study and blood samples were taken from those children. Anti-Hib IgG antibody (anti-PRP) level was determined in the serum by using anti-Haemophilus influenzae IgG EIA kit and anti-PRP antibody levels of 0.15 microg/mL and over were accepted as the natural immunity. Natural immunity was determined in 65.3% of the children. A relationship was determined statistically between the history of disease with possible Hib agent and with natural immunity. The exposure rate of children with Hib was higher than expected, even in children who were just a few months old. Our data revealed that multicentric, national studies should be done to define the burden of Hib disease before making a decision for Hib vaccine to be included in the National Immunization Program.

  9. [The prevalance of Enterobius vermicularis in primary school which have different socioecomic level in Ankara].

    PubMed

    Keskin, Nevin; Ay Bektaş, Ayla

    2014-01-01

    In this study, the prevalence of E. vermicularis and its relation with socioeconomic level, age, race, gender, mother's and father's educational level, income status, and housing type were investigated among 1729 students who were between ages 6-12 at 8 different elementary schools (Eryaman Türkkent, Tahsin Şahinkaya, Şahin, Beytepe, Azmi Ertuğrul, Ege, Semiha İsen, Samime Talat Primary School) in Kazan, Etimesgut, Çankaya, Pursaklar, Mamak, and Sincan in Ankara. A questionnaire form and cellophane-taped slides with locked bags were provided for students between November 2010 and May 2011. In total, 874 (50.5%) of students were female and 855 (49.5%) of them were male. According to the questionnaire, 197 (11.4%) of students had low, 986 (57.1%) moderate, and 545 (31.5%) high income levels. Also, 148 students out of 1729 were found to be infected with E. vermicularis, and the prevalence of Enterobius vermicularis was found 86%; 81% (9.5%) of the infected were male and 67 (7.7%) was female. As the result of study, a significant difference was found between the presence of E. vermicularis and socio-demographic properties. However, there was no significant difference between presence of E. vermicularis and gender. These results show that the importance of socio-demographic properties on the presence of E. vermicularis.

  10. Seasonal prevalence of Toxocara ova in soil samples from public parks in Ankara, Turkey.

    PubMed

    Avcioglu, H; Burgu, A

    2008-06-01

    This survey was conducted to determine prevalence of Toxocara spp. eggs and seasonal variation of this prevalence in public parks in Ankara, Turkey. A total of 259 sand samples were collected from May 2005 to April 2006 in 40 public parks for determining prevalence. To attain seasonal variation, a total of 696 sand samples were collected from five public parks regularly throughout year. Prevalence of Toxocara spp. and combination of Toxascaris leonina and Taenia spp. was 15.05% and 0.38%. Overall, 45% of public parks were contaminated. There was a seasonal variation in prevalence. Prevalence of Toxocara spp., Toxascaris leonina, and Taenia spp. eggs during summer (4.21%) was lower than during spring (12.64%), autumn (13.21%), and winter (9.77%; p < 0.05). Average number of Toxocara spp. eggs was 2.57 per 50 g of sand, with average dimension of 70.1 mum. In conclusion, prevalence data are consistent with international data reported in other metropolitans. Our results indicate that the public parks in surveyed areas may be a source of toxocariasis. Effective preventive measures should be established.

  11. [Antimicrobial resistance of Neisseria gonorrhoeae strains isolated from sex workers in Ankara].

    PubMed

    Zarakolu, Pinar; Sakizligil, Bülent; Unal, Serhat

    2006-01-01

    The prevalence of gonococcal infections among sexually transmitted infections is decreasing particularly in developed countries, but the increase in antimicrobial resistance of Neisseria gonorrhoeae is an emerging issue. There is lack of data about the epidemiology and the resistance pattern of the pathogen in our country. Gonococcal infections are recently included among the reportable diseases in Turkey. The specific laboratory tests are difficult, expensive and seldomly used for diagnosis in our country. The infection is usuallly treated empirically. In this study, 30 N. gonorrhoeae strains isolated from clinical samples (endocervical, rectal and urethral swabs) obtained from registered/unregistered sex workers admitted to Ankara Municipiality Hospital of Dermatology and Venereal Diseases were tested for beta-lactamase production and the susceptibility to various antimicrobials. The susceptibility testing was performed by agar dilution method, and the results were evaluated according to Clinical and Laboratory Standards Institute (CLSI) recommendations. Of the isolates, 70% was found resistant to penicilin and beta-lactamase production was observed in 48% of them. The susceptibility rates of the isolates to ceftriaxone, cefixime, ciprofloxacin, and tetracycline were found as 100%, 100%, 97%, and 40%, respectively.

  12. Transparent 3D Visualization of Archaeological Remains in Roman Site in Ankara-Turkey with Ground Penetrating Radar Method

    NASA Astrophysics Data System (ADS)

    Kadioglu, S.

    2009-04-01

    Transparent 3D Visualization of Archaeological Remains in Roman Site in Ankara-Turkey with Ground Penetrating Radar Method Selma KADIOGLU Ankara University, Faculty of Engineering, Department of Geophysical Engineering, 06100 Tandogan/ANKARA-TURKEY kadioglu@eng.ankara.edu.tr Anatolia has always been more the point of transit, a bridge between West and East. Anatolia has been a home for ideas moving from all directions. So it is that in the Roman and post-Roman periods the role of Anatolia in general and of Ancyra (the Roman name of Ankara) in particular was of the greatest importance. Now, the visible archaeological remains of Roman period in Ankara are Roman Bath, Gymnasium, the Temple of Augustus of Rome, Street, Theatre, City Defence-Wall. The Caesar Augustus, the first Roman Emperor, conquered Asia Minor in 25 BC. Then a marble temple was built in Ancyra, the administrative capital of province, today the capital of Turkish Republic, Ankara. This monument was consecrated to the Empreror and to the Goddess Rome. This temple is supposed to have built over an earlier temple dedicated to Kybele and Men between 25 -20 BC. After the death of the Augustus in 14AD, a copy of the text of "Res Gestae Divi Augusti" was inscribed on the interior of the pronaos in Latin, whereas a Greek translation is also present on an exterior wall of the cella. In the 5th century, it was converted in to a church by the Byzantines. The aim of this study is to determine old buried archaeological remains in the Augustus temple, Roman Bath and in the governorship agora in Ulus district. These remains were imaged with transparent three dimensional (3D) visualization of the ground penetrating radar (GPR) data. Parallel two dimensional (2D) GPR profile data were acquired in the study areas, and then a 3D data volume were built using parallel 2D GPR data. A simplified amplitude-colour range and appropriate opacity function were constructed and transparent 3D image were obtained to activate buried

  13. Future River Flow Estimations of Gerede-Ulusu River, Ankara, Turkey

    NASA Astrophysics Data System (ADS)

    Kentel, E.

    2009-12-01

    Increase in population, industrialization and urbanization causes water demand to increase. However, due to unplanned water resources utilization and environmental factors such as global warming, the increasing water demand can not be supplied by the available sources. Ankara, Turkey experienced this situation in the past years which resulted in water shortages in the city in 2007. As a temporary solution to this problem, a water transmission line was installed from Hirfanli Dam and water was pumped to Camlidere Dam reservoir. However, the authorities believe this is not a permanent solution; thus alternative water resources need to be investigated and included in the future management plans. As an alternative, transmitting water from Gerede-Ulusu River to Camlidere Dam is being considered. To be able to identify safe amount of water that will be available for transmission to Camlidere Dam, future river flow regime of Gerede-Ulusu River need to be assessed. An artificial neural network model is developed to estimate future monthly flow values of Gerede-Ulusu River. Past precipitation and river flow data, and the associated month are used to predict future river flows. One critical issue in water resources planning and management is determination of the reliability of the estimates. One of the major weaknesses of artificial neural network models is that they may fail to generate good estimates for extreme events, i.e. events that do not occur at all or often enough in the training set. If reliable estimates can be distinguished from unreliable ones, the former can be used with greater confidence in planning and management of the water resources. A fuzzy c-means algorithm is used in this study to cluster the estimates of the artificial neural networks into reliable and less-reliable river flow values. Key words: River flow estimation; Artificial Neural Network; fuzzy c-means clustering

  14. Urinary cotinine and breath carbon monoxide levels among bar and restaurant employees in ankara.

    PubMed

    Caman, Ozge Karadag; Erguder, Berrin I; Ozcebe, Hilal; Bilir, Nazmi

    2013-08-01

    Hospitality sector employees constitute one of the key groups with respect to their secondhand tobacco smoke exposure at work. This study aimed to detect urinary cotinine and breath carbon monoxide (CO) levels among bar and restaurant employees in Ankara, as well as the employees' opinions on the new antitobacco law, changes in smoking behavior, and subjective health status before and after the law entered into force. This before-after study was conducted in 19 premises, with the participation of 65 employees before implementation and 81 employees 3 months after implementation of the new antitobacco law in the hospitality sector. Data in both phases were collected through face-to-face surveys, breath CO measurements, and urinary cotinine analysis. Descriptive statistics were used to summarize data, whereas chi-square test, paired and unpaired t tests, and analysis of variance were used to compare groups. Most of the restaurant and bar employees were male and below 35 years old. Before-after comparison showed that health complaints of the hospitality sector employees such as watering and itching in the eyes, difficulty in breathing, and cough (p < .001), as well as breath CO (p < .001) and urinary cotinine levels (p < .001) decreased significantly 3 months after implementation of the law. Among the smoking employees, mean number of cigarettes smoked was also found to decrease (p = .012). Majority of the employees (83.8%) were found to support the smoking ban in enclosed public places. Results of this study provide solid evidence on the positive health effects of smoke-free laws and employees' support for smoke-free workplaces.

  15. Cardiovascular risk factor levels in a lower middle-class community in Ankara, Turkey.

    PubMed

    Tezcan, S; Altintaş, H; Sönmez, R; Akinci, A; Doğan, B; Cakir, B; Bilgin, Y; Klör, H U; Razum, Oliver

    2003-07-01

    To assess the prevalence of risk factors for coronary heart disease (CHD) in a lower middle-class urban community of Turkey. Cross-sectional study in an age- and sex-stratified random community sample with equal sample size per stratum. Direct age-standardization using the standard world population to allow international comparison of findings. Logistic regression modelling to identify risk factors for obesity. Gülveren, a residential area in Ankara, total population 23,000 persons. A total of 1672 adults aged 25-64 years and resident in the study community were interviewed, 1272 (76.1%) of those came for physical examination. The age-standardized prevalence of hypertension according to WHO MONICA criteria was 18.6% (95% confidence interval: 16.1-21.1%) among women and 12.3% (9.7-14.9%) among men; of obesity (body mass index, BMI > or =30 kg/m2) 51.0% (47.6-54.3%) among women and 15.1% (12.0-18.2%) among men; of current smoking 20.1% (17.5-22.6%) among women and 64.8% (61.4-68.2%) among men; of hypercholesterolaemia 20.1% (17.4-22.9%) among women and 13.8% (10.8-16.8%) among men; and of low high density lipoprotein (HDL) 48.4% (44.8-52.1%) among women and 40.6% (36.0-45.2%) among men. In the regression model, age, female sex, non- and ex-smoking were associated with obesity. The prevalence of smoking, obesity and low HDL is high in this urban, lower middle-class population, even in comparison with industrialized countries. Unexpectedly, women have less favourable CHD risk profiles than men, except for smoking. Preventive action should be community-wide and address the common risk factors simultaneously to avoid replacement effects such as becoming obese after quitting smoking.

  16. Assessment of Risk Factors of Obesity and Diet on Breast Cancer in Ankara, Turkey

    PubMed Central

    Alim, Nural Erzurum; Kiziltan, Gul

    2016-01-01

    Objective: To determine the risk factors of obesity and diet on breast cancer in Ankara, Turkey. Methods: A case-controlled study was carried out on newly diagnosed 40 breast cancer patients [patient group (PC)] and 40 volunteer individuals [control group (CG)] with no diagnosis of cancer and history of cancer in the family with similar characteristics to the age and gender-matched patient group between March and July 2016. All the individuals were administered a questionnaire by face-to-face interview method. Results: The mean menarche age, age at first birth and menopause age were 13.0±1.17, 22.6±3.78 and 44.33±2.39 years in PG and 12.3±0.95, 21.6±2.99, 46.71±2.41 years in CG, respectively. The mean BMI values were determined as 28.1±6.75 kg/m2 in PG and 30.1±6.18 kg/m2 in CG (p>0.05). It was determined that intake of vitamin C and fiber decreases the risk of breast cancer. Also, eating quickly and smoking were risk factors for breast cancer (p<0.05). Conclusion: This study indicated that there are relationships between menarche age, menopause age, and age at first birth, eating quickly, smoking and breast cancer. Conversely, there are significant negative relationships between dietary fiber, vitamin C intake and breast cancer. As a result, it can be said that there is a link between breast cancer and lifestyle factors and a reduction in the risk of developing breast cancer can be achieved through changes in diet, one of the lifestyle factors. PMID:28083060

  17. Induced abortion frequency in Ankara, Turkey, before and after the legal regulation of induced abortion.

    PubMed

    Maral, Işil; Durukan, Elif; Albyrak, Selda; Oztimur, Neşe; Biri, Aydan; Bumin, M Ali

    2007-09-01

    To determine the effects of the 1983 law that legalized induced abortion on the number and place of abortions, and on the use of family planning (FP) methods before and after abortion, and to determine the demographic characteristics and reproductive health features according to the order of abortion. This study included 2455 married, widowed or divorced women presenting at Mother and Child Health-Family Planning Centres in Ankara. A questionnaire was used for data collection. Nearly three out of 10 (28.7%) of the women had undergone at least one induced abortion. In the age groups 45-54 and 55-64, 49 and 37.3%, respectively, had had one or more terminations of pregnancy (TOPs). The induced abortion rate increased following the enacting of the law. In the 15-24 and in the 55-64 age group, 55.6 and 89%, respectively, of the women had been aborted by a private physician. Before the index pregnancy, 63.1% were not using contraception compared with 37.3% thereafter. The rate of use of FP increased after the law was passed. Although the most common reason for having an abortion was unwanted pregnancy in all age groups and nearly 60.0% of the women aged less than 55 reported that they were not using any FP method at the time of the TOP, the proportion of women having undergone at least one of these procedures increased after the law was passed, indicating that abortion is used as a FP method.

  18. The impact of anti-smoking laws on high school students in Ankara, Turkey

    PubMed Central

    Demir, Melike; Karadeniz, Gulistan; Demir, Fikri; Karadeniz, Cem; Kaya, Halide; Yenibertiz, Derya; Taylan, Mahsuk; Yilmaz, Sureyya; Sen, Velat

    2015-01-01

    ABSTRACT OBJECTIVE: To determine the factors affecting the smoking habits of high school students, their thoughts about changes resulting from anti-smoking laws, and how they are affected by those laws. METHODS: In this cross-sectional study, 11th-grade students at eight high schools in Ankara, Turkey, were invited to complete a questionnaire. RESULTS: A total of 1,199 students completed the questionnaire satisfactorily. The mean age of the respondents was 17.0 ± 0.6 years; 56.1% were female, of whom 15.3% were smokers; and 43.9% were male, of whom 43.7% were smokers (p < 0.001). The independent risk factors for smoking were male gender, attending a vocational school, having a sibling who smokes, having a friend who smokes, and poor academic performance. Of the respondents, 74.7% were aware of the content of anti-smoking laws; 81.8% approved of the restrictions and fines; and 8.1% had quit smoking because of those laws. According to the respondents, the interventions that were most effective were the (television) broadcast of films about the hazards of smoking and the ban on cigarette sales to minors. The prevalence of smoking was highest (31.5%) among students attending vocational high schools but lowest (7.5%) among those attending medical vocational high schools. Although 57.1% of the smokers were aware of the existence of a smoking cessation helpline, only 3.7% had called, none of whom had made any attempt to quit smoking. CONCLUSIONS: Although most of the students evaluated were aware of the harmful effects of smoking and approved of the anti-smoking laws, only a minority of those who smoked sought professional help to quit. PMID:26785961

  19. Determination of Uniaxial Compressive Strength of Ankara Agglomerate Considering Fractal Geometry of Blocks

    NASA Astrophysics Data System (ADS)

    Coskun, Aycan; Sonmez, Harun; Ercin Kasapoglu, K.; Ozge Dinc, S.; Celal Tunusluoglu, M.

    2010-05-01

    The uniaxial compressive strength (UCS) of rock material is a crucial parameter to be used for design stages of slopes, tunnels and foundations to be constructed in/on geological medium. However, preparation of high quality cores from geological mixtures or fragmented rocks such as melanges, fault rocks, coarse pyroclastic rocks, breccias and sheared serpentinites is often extremely difficult. According to the studies performed in literature, this type of geological materials may be grouped as welded and unwelded birmocks. Success of preparation of core samples from welded bimrocks is slightly better than unwelded ones. Therefore, some studies performed on the welded bimrocks to understand the mechanical behavior of geological mixture materials composed of stronger and weaker components (Gokceoglu, 2002; Sonmez et al., 2004; Sonmez et al., 2006; Kahraman, et al., 2008). The overall strength of bimrocks are generally depends on strength contrast between blocks and matrix; types and strength of matrix; type, size, strength, shape and orientation of blocks and volumetric block proportion. In previously proposed prediction models, while UCS of unwelded bimrocks may be determined by decreasing the UCS of matrix considering the volumetric block proportion, the welded ones can be predicted by considering both UCS of matrix and blocks together (Lindquist, 1994; Lindquist and Goodman, 1994; Sonmez et al., 2006 and Sonmez et al., 2009). However, there is a few attempts were performed about the effect of blocks shape and orientation on the strength of bimrock (Linqduist, 1994 and Kahraman, et al., 2008). In this study, Ankara agglomerate, which is composed of andesite blocks and surrounded weak tuff matrix, was selected as study material. Image analyses were performed on bottom, top and side faces of cores to identify volumetric block portions. In addition to the image analyses, andesite blocks on bottom, top and side faces were digitized for determination of fractal

  20. Caloris Basin

    NASA Image and Video Library

    1999-12-07

    Caloris Basin on Mercury, is one of the largest basins in the solar system, its diameter exceeds 1300 kilometers and is in many ways similar to the great Imbrium basin on the Moon. This image is from NASA Mariner 10 spacecraft which launched in 1974.

  1. Are Physicians Healthy When They Are Aged and Retired? A Survey of the Ankara Chamber of Medicine and the Turkish Geriatrics Society.

    PubMed

    Aslan, D; Gökçe-Kutsal, Y; Kanuncu, S

    2013-01-01

    In literature, there is a lack of knowledge about clinical and lifestyle characteristics of retired physicians. Aim of the study is to describe the health profile of older physicians registered to the Ankara Chamber of Medicine (Ankara, Turkey). Two hundred and seventy four registered physicians agreed to participate to a survery. Most of them (76.6%) were men. Mean age was 74.9 (standard deviation 6.3) years. More than 85% of the participants presented at least one chronic disease. High scores were reported for the role-physical component of the SF-36, differently from the general health section of it scoring low. The results of the present survey pose the basis for collaborative efforts from the Ankara Chamber of Medicine and the Turkish Geriatrics Society collaboratively to improve the design and development of services for local older physicians.

  2. The relationship between BMI and blood pressure in children aged 7-12 years in Ankara, Turkey.

    PubMed

    Polat, Mustafa; Yıkılkan, Hülya; Aypak, Cenk; Görpelioğlu, Süleyman

    2014-11-01

    Recent studies have reported an increasing prevalence of childhood hypertension. Obesity is probably the most important risk factor. The relationship between hypertension and BMI in children has not been studied in Ankara, which is the second largest city in Turkey. Cross-sectional study analysing direct data on height, weight and blood pressure of students. Population-based study in Ankara, the capital city of Turkey. In three schools, 2826 students aged 7-12 years. The overall prevalence of hypertension was 7·9 %. Among the 222 hypertensive children, 124 (56 %) were boys and ninety-eight (44 %) were girls (P=0·40). In the whole group, 3·6 % had only systolic hypertension, 0·7 % had only diastolic hypertension and 3·5 % had both systolic and diastolic hypertension. The prevalences of overweight and obesity were both 13·9 %. BMI was significantly correlated with blood pressure (P<0·001). Overweight and obesity were more common in boys (P<0·001). Hypertension was more common than has been reported in other studies. Blood pressure measurement should be routine and frequent in children, especially obese children.

  3. [Remarks of 52 physicians participating into 8th Ankara Emergency Rooms (ERs) Meeting 2005 on resuscitative thoracotomy intervention].

    PubMed

    Eryilmaz, Mehmet; Ozdoğan, Mehmet; Ağalar, H Fatih

    2006-07-01

    The aim of this study was to define the opinions of 52 emergency physicians working in different ERs in Ankara and participated in the 8th Ankara Emergency Meeting 2005, on resuscitative thoracotomy (RT). A questionnaire form containing 14 questions was designed for the opinions of physicians on RT. Responders filled in the forms through answering the questions by themselves. Data were analyzed using Student's t-test and ANOVA. The survey concluded three common points: 1. Resuscitative thoracotomy should be performed in the emergency rooms (65,4%), 2. It should be performed by specialists however; it is a procedure which can and should be conducted by every experienced emergency physician easily when the indications are clear (69,23%). 3. Majority of the responders stated that they would like to get a post-education course on this subject (96,15%). Theoretical and practical policies of our medical education on RT should be revised. Emergency rooms should be equipped for this intervention. Resuscitative thoracotomy should be applied by the experienced people, indications should be clarified well and emergency physicians should be trained on resuscitative thoracotomy by regular post-graduation courses.

  4. The Ankara Mélange: an indicator of Tethyan evolution of Anatolia

    NASA Astrophysics Data System (ADS)

    Çakir, Üner; Üner, Tijen

    2016-08-01

    The Ankara Mélange is a complex formed by imbricated slices of limestone block mélanges (Karakaya and Hisarlıkaya Formations), Neotethyan ophiolites (Eldivan, Ahlat and Edige ophiolites), post-ophiolitic cover units (Mart and Kavak formations) and Tectonic Mélange Unit (Hisarköy Formation or Dereköy Mélange). The Karakaya and Hisarlıkaya formations are roughly similar and consist mainly of limestone block mélange. Nevertheless, they represent some important geological differences indicating different geological evolution. Consequently, the Karakaya and Hisarlıkaya formations are interpreted as Eurasian and Gondwanian marginal units formed by fragmentation of the Gondwanian carbonate platform during the continental rifting of the Neotethys in the Middle Triassic time. During the latest Triassic, Neotethyan lithosphere began to subduct beneath the Eurasian continent and caused intense deformation of the marginal units. The Eldivan, Ahlat and Edige ophiolites represent different fragments of the Neotethyan oceanic lithosphere emplaced onto the Gondwanian margin during the Albian-Aptian, middle Turonian and middle Campanian, respectively. The Eldivan Ophiolite is a NE-SW trending and a nearly complete assemblage composed, from bottom to top, of a volcanic-sedimentary unit, a metamorphic unit, peridotite tectonites, cumulates and sheeted dykes. The Eldivan Ophiolite is unconformably covered by Cenomanian-Lower Turonian sedimentary unit. The Eldivan Ophiolite is overthrust by the Ahlat Ophiolite in the north and Edige Ophiolite in the west. The Ahlat ophiolite is an east-west oriented assemblage comprised of volcanic-sedimentary unit, metamorphic unit, peridotite tectonites and cumulates. The Edige Ophiolite consists of a volcanic-sedimentary unit, peridotite tectonites, dunite, wherlite, pyroxenite and gabbro cumulates. The Tectonic Mélange Unit is a chaotic formation of various blocks derived from ophiolites, from the Karakaya and Hisarlıkaya formations and

  5. Recognition of cigarette brand names and logos by primary schoolchildren in Ankara, Turkey

    PubMed Central

    Emri, S.; Bagci, T.; Karakoca, Y.; Baris, E.

    1998-01-01

    OBJECTIVE—To assess the smoking behaviour of primary schoolchildren and their ability to recognise brand names and logos of widely advertised cigarettes, compared with other commercial products intended for children.
DESIGN—Cross-sectional survey in classroom settings using a questionnaire designed to measure attitudes towards smoking and the recognition of brand names and logos for 16 food, beverage, cigarette, and toothpaste products.
SETTING—Ankara, Turkey.
SUBJECTS—1093 children (54.6% boys, 44.4% girls) aged 7-13 years (mean = 10, SD = 1), from grades 2-5. The student sample was taken from three primary schools—one school in each of three residential districts representing high, middle, and low income populations.
MAIN OUTCOME MEASURES—Prevalence of ever-smoking, recognition of brand names and logos.
RESULTS—Prevalence of ever-smoking was 11.7% overall (13.9% among boys and 9.1% among girls; p<0.05). Children aged eight years or less had a higher prevalence of ever-smoking (19.6%) than older children (p<0.002). Ever-smoking prevalence did not differ significantly across the three school districts. Ever-smoking prevalence was higher among children with at least one parent who smoked (15.3%) than among those whose parents did not (4.8%) (p<0.001). Brand recognition rates ranged from 58.1% for Chee-tos (a food product) to 95.2% for Samsun (a Turkish cigarette brand). Recognition rates for cigarette brand names and logos were 95.2% and 80.8%, respectively, for Samsun; 84.0% and 90.5%, respectively, for Camel; and 92.1% and 69.5%, respectively, for Marlboro. The Camel logo and the Samsun and Marlboro brand names were the most highly recognised of all product logos and brand names tested.
CONCLUSIONS—The high recognition of cigarette brand names and logos is most likely the result of tobacco advertising and promotion. Our results indicate the need to implement comprehensive tobacco control measures in Turkey

  6. Recognition of cigarette brand names and logos by primary schoolchildren in Ankara, Turkey.

    PubMed

    Emri, S; Bağci, T; Karakoca, Y; Bariş, E

    1998-01-01

    To assess the smoking behaviour of primary schoolchildren and their ability to recognise brand names and logos of widely advertised cigarettes, compared with other commercial products intended for children. Cross-sectional survey in classroom settings using a questionnaire designed to measure attitudes towards smoking and the recognition of brand names and logos for 16 food, beverage, cigarette, and toothpaste products. Ankara, Turkey. 1093 children (54.6% boys, 44.4% girls) aged 7-13 years (mean = 10, SD = 1), from grades 2-5. The student sample was taken from three primary schools--one school in each of three residential districts representing high, middle, and low income populations. Prevalence of ever-smoking, recognition of brand names and logos. Prevalence of ever-smoking was 11.7% overall (13.9% among boys and 9.1% among girls; p < 0.05). Children aged eight years or less had a higher prevalence of ever-smoking (19.6%) than older children (p < 0.002). Ever-smoking prevalence did not differ significantly across the three school districts. Ever-smoking prevalence was higher among children with at least one parent who smoked (15.3%) than among those whose parents did not (4.8%) (p < 0.001). Brand recognition rates ranged from 58.1% for Chee-tos (a food product) to 95.2% for Samsun (a Turkish cigarette brand). Recognition rates for cigarette brand names and logos were 95.2% and 80.8%, respectively, for Samsun; 84.0% and 90.5%, respectively, for Camel; and 92.1% and 69.5%, respectively, for Marlboro. The Camel logo and the Samsun and Marlboro brand names were the most highly recognised of all product logos and brand names tested. The high recognition of cigarette brand names and logos is most likely the result of tobacco advertising and promotion. Our results indicate the need to implement comprehensive tobacco control measures in Turkey.

  7. [Pandemic influenza A (H1N1)v vaccination status and factors affecting vaccination: Ankara and Diyarbakır 2009 data from Turkey].

    PubMed

    Ertek, Mustafa; Sevencan, Funda; Kalaycıoğlu, Handan; Gözalan, Ayşegül; Simşek, Ciğdem; Culha, Gönül; Dorman, Vedat; Ozlü, Ahmet; Arıkan, Füsun; Aktaş, Dilber; Akın, Levent; Korukluoğlu, Gülay; Sevindi, Demet Furkan

    2011-10-01

    In this study, it was aimed to determine the frequency of the symptoms of influenza-like illness during influenza A (H1N1)v pandemic in two provinces where sentinel influenza surveillance was conducted and also to obtain opinions about H1N1 influenza and vaccination, H1N1 vaccination status and factors affecting vaccination. This cross-sectional study was conducted in the provinces of Ankara (capital city, located at Central Anatolia) and Diyarbakır (located at southeastern Anatolia). It was planned to include 455 houses in Ankara and 276 houses in Diyarbakır. The household participation rate in the study was 78.9% and 53.6% for Ankara and Diyarbakır, respectively. Our study was carried out between January-February 2010, with 1164 participants from Ankara and 804 from Diyarbakır, including every household subjects except for infants younger than 11 months and patients with primary/secondary immunodeficiency diseases. Data was collected by site teams consisting of a physician and a healthcare staff with informed consent. Of the participants 45.5% from Ankara and 35.3% from Diyarbakır stated that they had gone through an influenza-like illness. The most frequently indicated clinical symptoms were fatigue/weakness, rhinitis, sore throat and cough. The rates of admission to a physician with influenza like illness complaints were 50.6% and 58.7%; rates of hospitalization due to influenza-like illness were 1% and 1.5%, and rates of antiviral drug use were 3.8% and 1.9%, in Ankara ve Diyarbakır participants, respectively. The rate of personal precautions taken by the subjects for prevention from pandemic influenza were 59% and 53.3%, in Ankara and Diyarbakır, respectively. These precautions most frequently were "hand washing" and "avoiding crowded public areas". H1N1 influenza vaccine was applied in 9.3% of the participants in Ankara and in 3.7% of the participants in Diyarbakır. Vaccination rate was higher in both of the provinces in adults over 25 years old than

  8. Late Jurassic-Early Cretaceous radiolarian age constraints from the sedimentary cover of the Amasia ophiolite (NW Armenia), at the junction between the Izmir-Ankara-Erzinçan and Sevan-Hakari suture zones

    NASA Astrophysics Data System (ADS)

    Danelian, T.; Asatryan, G.; Galoyan, Gh.; Sahakyan, L.; Stepanyan, J.

    2016-01-01

    The Amasia ophiolite, situated at the northernmost corner of Armenia, is part of the Sevan-Hakari suture zone which links with the Izmir-Ankara-Erzinçan suture zone in northern Turkey. Three new radiolarian assemblages have been extracted from siliceous sedimentary rocks that accumulated on the Amasia ophiolite in an oceanic setting. Two of these assemblages were extracted from red-brownish bedded cherts overlying basaltic lavas; one of these is likely to be middle Oxfordian to early Kimmeridgian in age, while the second correlates with the Berriasian. Similar time-equivalent lava-chert sequences have been dated recently using radiolarians from the Stepanavan, Vedi and Sevan ophiolite units, where they are considered to relate to submarine volcanic activity in the back-arc marginal basin in which the Armenian ophiolites were formed. The third radiolarian assemblage, of late Barremian age, was extracted from a more than 15-m-thick volcaniclastic-chert sequence. The related volcanic activity is likely to have been subaerial and probably relates to the formation of an oceanic volcanic plateau; no Cretaceous subaerial volcanism has been previously recorded in the Lesser Caucasus area.

  9. Jurassic-Paleogene intra-oceanic magmatic evolution of the Ankara Mélange, North-Central Anatolia, Turkey

    NASA Astrophysics Data System (ADS)

    Sarifakioglu, E.; Dilek, Y.; Sevin, M.

    2013-11-01

    Oceanic rocks in the Ankara Mélange along the Izmir-Ankara-Erzincan suture zone (IAESZ) in North-Central Anatolia include locally coherent ophiolite complexes (~179 Ma and ~80 Ma), seamount or oceanic plateau volcanic units with pelagic and reefal limestones (96.6 ± 1.8 Ma), metamorphic rocks with ages of 187.4 ± 3.7 Ma, 158.4 ± 4.2 Ma, and 83.5 ± 1.2 Ma, and subalkaline to alkaline volcanic and plutonic rocks of an island arc origin (~67-63 Ma). All but the arc rocks occur in a shaly-graywacke and/or serpentinite matrix, and are deformed by south-vergent thrust faults and folds that developed in the Middle to Late Eocene due to continental collisions in the region. Ophiolitic volcanic rocks have mid-ocean ridge (MORB) and island arc tholeiite (IAT) affinities showing moderate to significant LILE enrichment and depletion in Nb, Hf, Ti, Y and Yb, which indicate the influence of subduction-derived fluids in their melt evolution. Seamount/oceanic plateau basalts show ocean island basalt (OIB) affinities. The arc-related volcanic rocks, lamprophyric dikes and syeno-dioritic plutons exhibit high-K shoshonitic to medium-to high-K calc-alkaline compositions with strong enrichment in LILE, REE and Pb, and initial ϵNd values between +1.3 and +1.7. Subalkaline arc volcanic units occur in the northern part of the mélange, whereas the younger alkaline volcanic rocks and intrusions (lamprophyre dikes and syeno-dioritic plutons) in the southern part. The Early to Late Jurassic and Late Cretaceous epidote-actinolite, epidote-chlorite and epidote-glaucophane schists represent the metamorphic units formed in a subduction channel in the Northern Neotethys. The Middle to Upper Triassic neritic limestones spatially associated with the seamount volcanic rocks indicate that the Northern Neotethys was an open ocean with its MORB-type oceanic lithosphere by the Early Triassic. The Latest Cretaceous-Early Paleocene island arc volcanic, dike and plutonic rocks with

  10. Jurassic-Paleogene intraoceanic magmatic evolution of the Ankara Mélange, north-central Anatolia, Turkey

    NASA Astrophysics Data System (ADS)

    Sarifakioglu, E.; Dilek, Y.; Sevin, M.

    2014-02-01

    Oceanic rocks in the Ankara Mélange along the Izmir-Ankara-Erzincan suture zone (IAESZ) in north-central Anatolia include locally coherent ophiolite complexes (∼ 179 Ma and ∼ 80 Ma), seamount or oceanic plateau volcanic units with pelagic and reefal limestones (96.6 ± 1.8 Ma), metamorphic rocks with ages of 256.9 ± 8.0 Ma, 187.4 ± 3.7 Ma, 158.4 ± 4.2 Ma, and 83.5 ± 1.2 Ma indicating northern Tethys during the late Paleozoic through Cretaceous, and subalkaline to alkaline volcanic and plutonic rocks of an island arc origin (∼ 67-63 Ma). All but the arc rocks occur in a shale-graywacke and/or serpentinite matrix, and are deformed by south-vergent thrust faults and folds that developed in the middle to late Eocene due to continental collisions in the region. Ophiolitic volcanic rocks have mid-ocean ridge (MORB) and island arc tholeiite (IAT) affinities showing moderate to significant large ion lithophile elements (LILE) enrichment and depletion in Nb, Hf, Ti, Y and Yb, which indicate the influence of subduction-derived fluids in their melt evolution. Seamount/oceanic plateau basalts show ocean island basalt (OIB) affinities. The arc-related volcanic rocks, lamprophyric dikes and syenodioritic plutons exhibit high-K shoshonitic to medium- to high-K calc-alkaline compositions with strong enrichment in LILE, rare earth elements (REE) and Pb, and initial ɛNd values between +1.3 and +1.7. Subalkaline arc volcanic units occur in the northern part of the mélange, whereas the younger alkaline volcanic rocks and intrusions (lamprophyre dikes and syenodioritic plutons) in the southern part. The late Permian, Early to Late Jurassic, and Late Cretaceous amphibole-epidote schist, epidote-actinolite, epidote-chlorite and epidote-glaucophane schists represent the metamorphic units formed in a subduction channel in the northern Neotethys. The Middle to Upper Triassic neritic limestones spatially associated with the seamount volcanic rocks indicate that the northern

  11. Myristoylation increases the CD8+T-cell response to a GFP prototype antigen delivered by modified vaccinia virus Ankara.

    PubMed

    Marr, Lisa; Lülf, Anna-Theresa; Freudenstein, Astrid; Sutter, Gerd; Volz, Asisa

    2016-04-01

    Activation of CD8(+)T-cells is an essential part of immune responses elicited by recombinant modified vaccinia virus Ankara (MVA). Strategies to enhance T-cell responses to antigens may be particularly necessary for broadly protective immunization against influenza A virus infections or for candidate vaccines targeting chronic infections and cancer. Here, we tested recombinant MVAs that targeted a model antigen, GFP, to different localizations in infected cells. In vitro characterization demonstrated that GFP accumulated in the nucleus (MVA-nls-GFP), associated with cellular membranes (MVA-myr-GFP) or was equally distributed throughout the cell (MVA-GFP). On vaccination, we found significantly higher levels of GFP-specific CD8(+)T-cells in MVA-myr-GFP-vaccinated BALB/c mice than in those immunized with MVA-GFP or MVA-nls-GFP. Thus, myristoyl modification may be a useful strategy to enhance CD8(+)T-cell responses to MVA-delivered target antigens.

  12. Assessment of HIV/AIDS awareness among 500 patients referred to the Ankara University Faculty of Dentistry.

    PubMed

    Kamburoğlu, K; Cebeci, A R I; Paksoy, C S

    2009-12-01

    To assess the knowledge of and attitudes to AIDS among patients referred to the Ankara University Faculty of Dentistry, Turkey. A random sample of 500 patients participated and completed a questionnaire which comprised of six basic questions aimed at assessing the respondent's general knowledge and attitude towards AIDS. The questionnaire also collected demographic information about each patient, including age, gender and level of education. : Out of 500 respondents, 65 (13%) had been tested for HIV. The majority of respondents, 479 (95.8%) were aware that AIDS was a transmissible disease, and of these, 410 (85.6%) knew that semen and blood were modes of transmission. In addition, 451 (90.2%) respondents were in favour of requiring AIDS testing for all patients undergoing dental treatment. Educational level was found to be the main factor affecting the number of correct answers regarding transmission of the disease. The study highlighted dental patients' misconceptions, risk perceptions, and attitudes towards HIV/AIDS.

  13. Protective and disease-enhancing immune responses induced by recombinant modified vaccinia Ankara (MVA) expressing respiratory syncytial virus proteins.

    PubMed

    Olszewska, Wieslawa; Suezer, Yasemin; Sutter, Gerd; Openshaw, Peter J M

    2004-11-25

    Modified vaccinia Ankara (MVA) recombinants expressing single or multiple RSV surface proteins (F or G) are promising potential vaccines. We studied humoral and cellular responses induced by MVA-F and MVA-G in mice, comparing them to a formalin inactivated RSV preparation (FI-RSV) known to increase disease severity. MVA-F or MVA-G vaccination enhanced weight loss during RSV challenge, but did not show the lung eosinophilia seen after FI-RSV vaccination. FI-RSV induced a stronger total RSV IgG response than the MVA recombinants, but very little IgG2a. MVA recombinants induced cytokine responses biased towards IFNgamma and IL-12, while FI-RSV induced strong IL-4/5 responses in the lungs during RSV challenge. Thus, MVA vaccines induce a favourable immune profile in RSV disease but retain the potential to enhance disease.

  14. Environmental and psychosocial factors affecting seat belt use among Turkish front-seat occupants in Ankara: two observation studies.

    PubMed

    Simşekoğlu, Ozlem; Lajunen, Timo

    2008-01-01

    Low seat belt use rate among car occupants is one of the main problems contributing to low driver and passenger safety in Turkey, where injury and fatality rates of car occupants are very high in traffic crashes. The present article consists of two observation studies, which were conducted in Ankara. The first study aimed at investigating environmental factors and occupant characteristics affecting seat belt use among front-seat occupants, and the objective of the second study was to investigate the relationship between driver and front-seat passenger seat belt use. In the first study, 4, 227 front-seat occupants (drivers or front seat passengers) were observed on four different road sides and, in the second study 1, 398 front seat occupants were observed in car parks of five different shopping centers in Ankara. In both observations, front-seat occupants' seat bet use (yes, no), sex (male, female), and age (< 30 years, 30-50 years, > 50 years) were recorded. The data were analyzed using chi-square statistics and binary logistic regression techniques. Results of the first study showed that seat belt use proportion among observed front seat occupants was very low (25%). Being female and traveling on intercity roads were two main factors positively related to use a seat belt among front-seat occupants. High correlations between seat belt use of the drivers and front-seat passengers were found in the second study. Overall, low seat belt use rate (25%) among the front-seat occupants should be increased urgently for an improved driver and passenger safety in Turkey. Seat belt campaigns especially tailored for male front-seat occupants and for the front-seat occupants traveling on city roads are needed to increase seat belt use rates among them. Also, both drivers and passengers may have an important role in enforcing seat belt use among themselves.

  15. BASINS Publications

    EPA Pesticide Factsheets

    Although BASINS has been in use for the past 10 years, there has been limited modeling guidance on its applications for complex environmental problems, such as modeling impacts of hydro modification on water quantity and quality.

  16. Basin analysis

    SciTech Connect

    Lerche, I. )

    1989-01-01

    The exploration for oil is a high-risk game. Worldwide drilling success is around 5-10%, the average cost of drilling is around $1000 a foot, and the average well is now around 15,000 feet deep. Over the years, two fundamental avenues of attack have been developed: methods designed to locate oil in situ from direct measurement ahead of the drill and methods focusing on the dynamic evolution of a sedimentary basin in relation to the timing of hydrocarbon generation, migration, and accumulation to provide an assessment of which areas in a basin might be the most prospective for oil accumulations today. This volume addresses the problem of quantitative basin analysis in relation to oil accumulations. Emphasis is placed on the uncertainties and resolution limits of basin analysis given constraints derived from surface and downhole data and the sensitivity to model input parameters and assumptions.

  17. Callisto basin

    NASA Technical Reports Server (NTRS)

    1979-01-01

    This picture of a multi=ring basin on Callisto was taken the morning of March 6, 1979, from a distance of about 200,000 km. The complicated circular structure seen at left center is similar to the large circular impact basins that dominate the surface of the Earth's moon and also the planet Mercury. The inner parts of these basins are generally surrounded by radially lineated ejecta and several concentric mountainous ring structures that are thought to form during the impact event. This multi-ring basin on Callisto consists of light floored central basin some 300 k m in diameter surrounded by at least eight to ten discontinuous rhythmically spaced ridges. No radially lineated ejecta can be seen. The ring structures on Moon and Mercury have been likened to ripples produced on a pond by a rock striking the water. The great number of rings observed around this basin on Callisto is consistent with its low planetary density and probable low internal strength. JPL manages and controls the Voyager project for NASA's Office of Space Science.

  18. Parana basin

    SciTech Connect

    Zalan, P.V.; Wolff, S.; Conceicao, J.C.J.; Vieira, I.S.; Astolfi, M.A.; Appi, V.T.; Zanotto, O.; Neto, E.V.S.; Cerqueira, J.R.

    1987-05-01

    The Parana basin is a large intracratonic basin in South America, developed entirely on continental crust and filled with sedimentary and volcanic rocks ranging in age from Silurian to Cretaceous. It occupies the southern portion of Brazil (1,100,000 km/sup 2/ or 425,000 mi/sup 2/) and the eastern half of Paraguay (100,000 km/sup 2/ or 39,000 mi/sup 2/); its extension into Argentina and Uruguay is known as the Chaco-Parana basin. Five major depositional sequences (Silurian, Devonian, Permo-Carboniferous, Triassic, Juro-Cretaceous) constitute the stratigraphic framework of the basin. The first four are predominantly siliciclastic in nature, and the fifth contains the most voluminous basaltic lava flows of the planet. Maximum thicknesses are in the order of 6000 m (19,646 ft). The sequences are separated by basin wide unconformities related in the Paleozoic to Andean orogenic events and in the Mesozoic to the continental breakup and sea floor spreading between South America and Africa. The structural framework of the Parana basin consists of a remarkable pattern of criss-crossing linear features (faults, fault zones, arches) clustered into three major groups (N45/sup 0/-65/sup 0/W, N50/sup 0/-70/sup 0/E, E-W). The northwest- and northeast-trending faults are long-lived tectonic elements inherited from the Precambrian basement whose recurrent activity throughout the Phanerozoic strongly influenced sedimentation, facies distribution, and development of structures in the basin. Thermomechanical analyses indicate three main phases of subsidence (Silurian-Devonian, late Carboniferous-Permian, Late Jurassic-Early Cretaceous) and low geothermal gradients until the beginning of the Late Jurassic Permian oil-prone source rocks attained maturation due to extra heat originated from Juro-Cretaceous igneous intrusions. The third phase of subsidence also coincided with strong tectonic reactivation and creation of a third structural trend (east-west).

  19. An evaluation on levels of knowledge, attitude and behavior of people at 65 years and above about alternative medicine living in Ankara.

    PubMed

    Ozer, Ozlem; Santaş, Fatih; Yıldırım, Hasan Hüseyin

    2012-01-01

    The aim was to determine the knowledge, attitude and behavioral levels of people at and above 65 years of age, living in Ankara (Turkey) about alternative medicine. The study was carried out between March - April 2010 through survey application of 200 participants by selective random sampling from the population. Data obtained as a result of the survey were analyzed by SPSS program. The study revealed that 83.5% of the participants believed in alternative therapy methods but 16.5% of them did not. It is concluded that herbal therapy methods are the most frequently used methods with a 63% rate among other alternative therapy methods. When status of the participants was analyzed it was found that it was found that 69% received the information about alternative medicines from their family while 53.5% received it from television This study revealed that alternative medicine is profoundly used by people above 65 years of age in Ankara.

  20. To determine of the prevalence of Bacterial Vaginosis, Candida sp, mixed infections (Bacterial Vaginosis + Candida sp), Trichomonas Vaginalis, Actinomyces sp in Turkish women from Ankara, Turkey.

    PubMed

    Haltas, Hacer; Bayrak, Reyhan; Yenidunya, Sibel

    2012-10-01

    To determine of the prevalence of Bacterial Vaginosis, Candida sp, mixed infections (Bacterial Vaginosis + Candida sp), Trichomonas Vaginalis, Actinomyces sp in Ankara, Turkey and analyze whether there is seasonal variation in these infectious agents. A retrospective study on the results of 23298 cervical cytology examinations of patients which were performed in Fatih University Faculty of Medicine, Pathology Laboratory in Ankara, Turkey from January 2007 to July 2011. Patients were included in the study if a Pap smear was performed for any reason. The prevalence of Bacterial Vaginosis, Candida sp, mixed infections (Bacterial Vaginosis + Candida sp), Trichomonas Vaginalis, Actinomyces sp was 7.76%, 2.81%, 0.32%, 0.13%, and 0.27%, respectively A seasonal variation was not observed in the prevalence of any of the infectious agents (p>0.05). We conclude that cervical cytology is well suited for diagnosis of cervical infections. Bacterial vaginosis appears to be the predominant cause of vaginitis.

  1. [Tuberculosis Laboratory Surveillance Network (TuLSA) study group. The first step for national tuberculosis laboratory surveillance: Ankara, 2011].

    PubMed

    Sezen, Figen; Albayrak, Nurhan; Özkara, Şeref; Karagöz, Alper; Alp, Alpaslan; Duyar Ağca, Filiz; İnan Süer, Asiye; Müderris, Tuba; Ceyhan, İsmail; Durmaz, Rıza; Ertek, Mustafa

    2015-04-01

    The most effective method for monitoring country-level drug resistance frequency and to implement the necessary control measures is the establishment of a laboratory-based surveillance system. The aim of this study was to summarize the follow up trend of the drug-resistant tuberculosis (TB) cases, determine the load of resistance and evaluate the capacities of laboratories depending on laboratory quality assurance system for the installation work of National Tuberculosis Laboratory Surveillance Network (TuLSA) which has started in Ankara in 2011. TuLSA studies was carried out under the coordination of National Tuberculosis Reference Laboratory (NRL) with the participation of TB laboratories and dispensaries. Specimens of TB patients, reported from health institutions, were followed in TB laboratories, and the epidemiological information was collected from the dispensaries. One isolate per patient with the drug susceptibility test (DST) results were sent to NRL from TB laboratories and in NRL the isolates were rechecked with the genotypical (MTBDRplus, Hain Lifescience, Germany) and phenotypical (MGIT 960, BD, USA) DST methods. Molecular epidemiological analysis were also performed by spoligotyping and MIRU/VNTR. Second-line DST was applied to the isolates resistant to rifampin. A total of 1276 patients were reported between January 1st to December 31th 2011, and 335 cases were defined as "pulmonary TB from Ankara province". The mean age of those patients was 43.4 ± 20 years, and 67.5% were male. Three hundred seventeen (94.6%) patients were identified as new cases. The average sample number obtained from pulmonary TB cases was 3.26 ± 2.88, and 229 (68.3%) of them was culture positive. DST was applied to all culture positive isolates; 90.4% (207/229) of cases were susceptible to the five drugs tested (ethambutol, isoniazid, pyrazinamide, rifampicin, streptomycin). Eight (3.5%) of the isolates were multidrug-resistant (MDR-TB), while no extensively drug

  2. Chickenpox complications, incidence and financial burden in previously healthy children and those with an underlying disease in Ankara in the pre-vaccination period.

    PubMed

    Ozdemir, Halil; Candir, Mehmet Onur; Karbuz, Adem; Belet, Nurşen; Tapisiz, Anil; Ciftçi, Ergin; Ince, Erdal

    2011-01-01

    The aim of this study was to determine the complications, financial burden and mortality caused by chickenpox using the data of Ankara, Turkey in the pre-vaccination period. The study was conducted as a retrospective sectional study. Of the 65 patients admitted to our hospital, 34 (52.3%) had been previously healthy, 10 (15.4%) had previous chronic disease and 21 (32.3%) were immunocompromised. The most common complications of chickenpox in those patient groups were skin and soft tissue infections (41.2%), hematological complications (50%) and gastrointestinal complications (38.1%), respectively. We found 10.6/100,000 and 8.7/100,000 rates of hospitalization due to chickenpox in Ankara for all children and for previously healthy children, respectively. The chickenpox-related mortality rate for the 0-17 age group was 3.03/1,000,000 in Ankara. In conclusion, we feel that a national vaccination program for chickenpox will lead to a significant decrease in the overall cost to our country.

  3. [A case of cutaneous leishmaniasis caused by Leishmania infantum in a non-endemic province (Ankara) of Turkey].

    PubMed

    Dinçer, Didem; Arca, Ercan; Koç, Erol; Topal, Yusuf; Taylan Özkan, Ayşegül; Celebi, Bekir

    2012-07-01

    Southeastern Anatolia and the Mediterranean regions of Turkey are known as endemic areas for cutaneous leishmaniasis (CL). In this report, a 64 years-old male patient with CL caused by Leishmania infantum has been presented. The patient who was inhabiting in Ankara (Central Anatolia region, Turkey) complained from a lesion on his right ring finger for the last six months. He has a cat and has been engaged with gardening. Overall, he was healthy with the exception of hypertension and glucose intolerance. The patient had not left Ankara since the last seven months, however, he had previously been to the Aegean coast during his summer holiday. The examination of the 4th phalanx of his right hand revealed the presence of a 3 x 3 cm erythematous, slightly swollen lesion, at the center of which 1.5 x 1.5 cm ulcerative area covered with a hemorrhagic crust, was detected. Neither axillary or cervical lymphadenopathy, nor hepatosplenomegaly could be observed. The routine examinations, including complete blood count, serum biochemistry, chest X-ray and abdominal ultrasonography were within normal limits. Giemsa stained smears prepared from aspiration of the lesion revealed amastigote-like organisms and leishmania promastigotes were grown in NNN media. PCR amplification of the specimen indicated the presence of a positive DNA band of 420 bp specific for Leishmania spp. The serum sample of the patient revealed positivity for leishmaniasis by the rapid rK39 test and immunofluorescence antibody (IFAT) test. The organism was identified as L.infantum by PCR-RFLP applied to the cultivated organism. The examination of his cat's serum for leishmaniasis by IFAT and PCR, were negative. The exact way of transmission had not been confirmed for the patient. However, when long incubation period of CL was considered, the transmission might probably occurred during his summer stay in the Aegean coast. This case was presented to withdraw attention to a delayed diagnosis of CL which developed

  4. Distribution of Spoligotyping Defined Genotypic Lineages among Drug-Resistant Mycobacterium tuberculosis Complex Clinical Isolates in Ankara, Turkey

    PubMed Central

    Kisa, Ozgul; Tarhan, Gulnur; Gunal, Selami; Albay, Ali; Durmaz, Riza; Saribas, Zeynep; Zozio, Thierry; Alp, Alpaslan; Ceyhan, Ismail; Tombak, Ahmet; Rastogi, Nalin

    2012-01-01

    Background Investigation of genetic heterogeneity and spoligotype-defined lineages of drug-resistant Mycobacterium tuberculosis clinical isolates collected during a three-year period in two university hospitals and National Tuberculosis Reference and Research Laboratory in Ankara, Turkey. Methods and Findings A total of 95 drug-resistant M. tuberculosis isolates collected from three different centers were included in this study. Susceptibility testing of the isolates to four major antituberculous drugs was performed using proportion method on Löwenstein–Jensen medium and BACTEC 460-TB system. All clinical isolates were typed by using spoligotyping and IS6110-restriction fragment length polymorphism (RFLP) methods. Seventy-three of the 95 (76.8%) drug resistant M. tuberculosis isolates were isoniazid-resistant, 45 (47.4%) were rifampicin-resistant, 32 (33.7%) were streptomycin-resistant and 31 (32.6%) were ethambutol-resistant. The proportion of multidrug-resistant isolates (MDR) was 42.1%. By using spoligotyping, 35 distinct patterns were observed; 75 clinical isolates were grouped in 15 clusters (clustering rate of 79%) and 20 isolates displayed unique patterns. Five of these 20 unique patterns corresponded to orphan patterns in the SITVIT2 database, while 4 shared types containing 8 isolates were newly created. The most prevalent M. tuberculosis lineages were: Haarlem (23/95, 24.2%), ill-defined T superfamily (22/95, 23.2%), the Turkey family (19/95, 20%; previously designated as LAM7-TUR), Beijing (6/95, 6.3%), and Latin-America & Mediterranean (LAM, 5/95 or 5.3%), followed by Manu (3/95, 3.2%) and S (1/95, 1%) lineages. Four of the six Beijing family isolates (66.7%) were MDR. A combination of IS6110-RFLP and spoligotyping reduced the clustering rate from 79% to 11.5% among the drug resistant isolates. Conclusions The results obtained showed that ill-defined T, Haarlem, the Turkey family (previously designated as LAM7-TUR family with high phylogeographical

  5. Asthma and allergic diseases in schoolchildren: third cross-sectional survey in the same primary school in Ankara, Turkey.

    PubMed

    Demir, Ahmet U; Karakaya, Gül; Bozkurt, Bülent; Sekerel, Bülent E; Kalyoncu, Ali F

    2004-12-01

    We investigated prevalence and determinants of asthma and allergic diseases in a cross-sectional survey of schoolchildren aged 6-14 in 2002. This was the third of a series of cross-sectional surveys, conducted in 1992 and 1997, in the same school in Ankara, Turkey. Questionnaire including information on house characteristics, dietary habits, past and current exposures and diseases were distributed to 1064 children (523 boys, 541 girls) and filled by the parents at home. Percentage of children having a pet was significantly higher (1992: 7.9, 1997: 22.9, 2002: 21), but that of passive smoking was significantly lower (1992: 74, 1997: 64, 2002: 64.1) in 1997 and 2002 when compared with 1992. Current prevalence percentage of asthma (1992: 8.3, 1997: 9.8, 2002: 6.4), wheeze (1992: 11.9, 1997: 13.3, 2002: 6.4), hay fever (1992: 15.4, 1997: 14.1, 2002: 7.2), and eczema (1992: 4, 1997: 4.3, 2002: 1.8) were significantly lower in 2002 compared with 1992. Multiple logistic regression analysis model for current wheeze included ingestion of cow's milk (no regular ingestion: reference, ORs and 95% CIs, <1 glass/day: 0.5, 0.3-1.0; at least 1 glass/day: 0.3, 0.2-0.7), ingestion of red meat (2.2, 1.2-3.8), and currently holding a dog (6.1, 1.6-23.4). Multiple logistic regression analysis model for current hay fever included ingestion of red meat (1.8, 1.1-2.9) and father's education (none of the parents finished secondary school: reference, secondary school to university: 0.5, 0.2-1.0). Our findings suggested that current prevalence of asthma and allergic diseases decreased among schoolchildren in Ankara, in the last 10 yr, and ingestion of milk and red meat could have a role in the occurrence of asthma and hay fever. Detailed assessment of dietary habits is required to test this hypothesis.

  6. Late Cretaceous to Late Eocene Hekimhan Basin (Central Eastern Turkey) as a supra-ophiolite sedimentary/magmatic basin related to the later stages of closure of Neotethys

    NASA Astrophysics Data System (ADS)

    Booth, Matthew G.; Robertson, Alastair H. F.; Tasli, Kemal; İnan, Nurdan

    2014-11-01

    The Hekimhan Basin is here put forward as a type example of a globally important class of basin, known as a supra-ophiolite basin. Such basins form after the emplacement of ophiolitic (i.e. oceanic) rocks onto a passive continental margin, but long prior to continental collision. The Hekimhan Basin developed as part of the northern margin of the Tauride microcontinent during the collision and suturing of two Neotethyan oceans to the north, namely the Inner Tauride Ocean and the İzmir-Ankara-Erzincan ocean. The basin records two main stages of tectonic development, during latest Cretaceous to Late Eocene time. The first phase of basin development during the Late Cretaceous (Maastrichtian) began with the erosion of emplaced ophiolitic rocks, resulting in non-marine clastic sedimentation. Subsequently, the basin rapidly subsided, in response to inferred regional crustal extension, resulting in the deposition of hemipelagic marls and local sapropelic mudstones. The axial parts of the basin experienced alkaline, within-plate-type, basaltic volcanism. The Late Maastrichtian culminated in deposition of shallow-marine carbonates. Overlying Paleocene sediments are restricted to thin, localised, marine evaporates, associated with a low-angle unconformity. The second stage of basin development began during the Early Eocene with deposition of shallow-marine carbonates, coupled with localised basaltic volcanism, again of extensional type. The basin emerged during the Mid-Late Eocene in a late-stage collisional to post-collisional setting. Compressional deformation largely reflects post-suture tightening. A short-lived marine transgression occurred during the Mid-Miocene. The basin was later deformed by both left-lateral and right-lateral strike-slip. Several different tectonic models are considered, notably extension related to the northward pull of a still-subducting oceanic slab, and back-arc extension related to northward subduction of Neotethys (to the south). The first

  7. Determining the agent factors related with time management of responsible doctors and nurses in clinics at Ankara University hospitals.

    PubMed

    Acuner, Ahmet Munir; Nilgun, Sarp; Cifteli, F Gulay

    2006-01-01

    This research has been planned and conducted as a descriptive scanning model field study in order to determine the agent factors related with time management of doctors and nurses in positions of responsibility at Ankara University hospitals. As data collection instruments; the "Personal Information Form" which has been developed to determine the socio-demographical characteristics of the research group, the questionnaire of "Determining the Time Management Attitudes and Behaviour of Managers, Time Management Opportunities of the Managers, Prodcutive Working Times of the Managers and the Factors Causing Them to Lose Time", developed by Erdem has been used. It has been determined that the time management attitudes and behaviour of doctors, nurses and nurse assistants responsible for clinics are all different. It was found that nurse assistants graduated from pre-undergraduate or high schools are the least conscious of time management. In particular, nurse assistants of 36 years old and over with 21 years of work experience and 11 years of management experience show little awareness of time management. The time losing factors of the research group were found to be unnecessary visitors, lack of materials and the excessive amount of time spent on obtaining the necessary equipment.

  8. Mineralogical, geochemical and micromorphological evaluation of the Plio-Quaternary paleosols and calcretes from Karahamzall, Ankara (Central Turkey)

    NASA Astrophysics Data System (ADS)

    Küçükuysal, Ceren; Kapur, Selim

    2014-06-01

    We present the mineralogical, micromorphological, and geochemical characteristics of the paleosols and their carbonates from Karahamzall, Ankara (Central Turkey). The paleosols include calcretes of powdery to nodular forms and alternate with channel deposits. The presence of pedofeatures, such as clay cutans, floating grains, circumgranular cracks, MnO linings, secondary carbonate rims, traces of past bioturbation and remnants of root fragments are all the evidence of pedogenesis. Bw is the most common soil horizon showing subangular-angular blocky to granular or prismatic microstructures. Calcretes, on the other hand, are evaluated as semi-mature massive, nodular, tubular or powdery forms. The probable faunal and floral passages may also imply the traces of life from when these alluvial deposits were soil. The presence of early diagenetic palygorskite and dolomite together with high salinization, high calcification and low chemical index of alteration values are evidence of the formation of calcretes under arid and dry conditions. δ13C compositions of the carbonates ranging from -7.11 ‰ to -7.74 ‰ VPDB are comformable with the world pedogenic carbonates favouring the C4 vegetation; likely δ18O compositions of the carbonates are between -3.97 ‰ and -4.91 ‰ which are compatible with the paleosols formed under the influence of meteroic water in the vadose zone

  9. Sensitivity analyses for the DTMs derived from Unmanned Aerial Vehicle (UAV) in gully erosion mapping: Nallihan badland area (Ankara, Turkey)

    NASA Astrophysics Data System (ADS)

    Avdan, Ugur; Gorum, Tolga; Comert, Resul; Nefeslioglu, Hakan

    2015-04-01

    The main purpose of this study is to evaluate the spatial resolutions for the Digital Terrain Models (DTMs) derived from Unmanned Aerial Vehicle (UAV) in gully erosion mapping. For the purpose, Nallihan badland area (Ankara, Turkey) was selected to be the experimental site. The investigations were carried out in 3 stages; (i) production of the DTMs having 3 cm and 9 cm spatial resolutions by using the orthophoto imagery acquired from the UAV at 97.5 m and 292.4 m altitudes, respectively, (ii) Terrestrial Laser Scanning (TLS) of the experimental site and production of the DTMs derived from the TLS data resampled at 3 cm and 9 cm spatial resolutions, and (iii) spatial and profile comparisons of the derived data. The average altitude differences were obtained on the intervals (-0.1, 0.1) m and (-0.2, 0.2) m for the comparisons between TLS-3cm and UAV-3cm, and TLS-9cm and UAV-9cm data, respectively. Additionally, considering the profile comparisons, it is revealed that depending on the decreasing of spatial resolution, the erosion rates calculated from the DTMs increase artificially.

  10. Generation of Recombinant Modified Vaccinia Virus Ankara Encoding VP2, NS1, and VP7 Proteins of Bluetongue Virus.

    PubMed

    Marín-López, Alejandro; Ortego, Javier

    2016-01-01

    Modified Vaccinia Virus Ankara (MVA) is employed widely as an experimental vaccine vector for its lack of replication in mammalian cells and high expression level of foreign/heterologous genes. Recombinant MVAs (rMVAs) are used as platforms for protein production as well as vectors to generate vaccines against a high number of infectious diseases and other pathologies. The portrait of the virus combines desirable elements such as high-level biological safety, the ability to activate appropriate innate immune mediators upon vaccination, and the capacity to deliver substantial amounts of heterologous antigens. Recombinant MVAs encoding proteins of bluetongue virus (BTV), an Orbivirus that infects domestic and wild ruminants transmitted by biting midges of the Culicoides species, are excellent vaccine candidates against this virus. In this chapter we describe the methods for the generation of rMVAs encoding VP2, NS1, and VP7 proteins of bluetongue virus as a model example for orbiviruses. The protocols included cover the cloning of VP2, NS1, and VP7 BTV-4 genes in a transfer plasmid, the construction of recombinant MVAs, the titration of virus working stocks and the protein expression analysis by immunofluorescence and radiolabeling of rMVA infected cells as well as virus purification.

  11. Strong, but Age-Dependent, Protection Elicited by a Deoxyribonucleic Acid/Modified Vaccinia Ankara Simian Immunodeficiency Virus Vaccine.

    PubMed

    Chamcha, Venkateswarlu; Kannanganat, Sunil; Gangadhara, Sailaja; Nabi, Rafiq; Kozlowski, Pamela A; Montefiori, David C; LaBranche, Celia C; Wrammert, Jens; Keele, Brandon F; Balachandran, Harikrishnan; Sahu, Sujata; Lifton, Michelle; Santra, Sampa; Basu, Rahul; Moss, Bernard; Robinson, Harriet L; Amara, Rama Rao

    2016-01-01

    Background.  In this study, we analyzed the protective efficacy of a simian immunodeficiency virus (SIV) macaque 239 (SIVmac239) analogue of the clinically tested GOVX-B11 deoxyribonucleic acid (DNA)/modified vaccinia Ankara (MVA) human immunodeficiency virus vaccine. Methods.  The tested vaccine used a DNA immunogen mutated to mimic the human vaccine and a regimen with DNA deliveries at weeks 0 and 8 and MVA deliveries at weeks 16 and 32. Twelve weekly rectal challenges with 0.3 animal infectious doses of SIV sootey mangabey E660 (SIVsmE660) were administered starting at 6 months after the last immunization. Results.  Over the first 6 rectal exposures to SIVsmE660, <10-year-old tripartite motif-containing protein 5 (TRIM5)α-permissive rhesus macaques showed an 80% reduction in per-exposure risk of infection as opposed to a 46% reduction in animals over 10 years old; and, over the 12 challenges, they showed a 72% as opposed to a 10% reduction. Analyses of elicited immune responses suggested that higher antibody responses in the younger animals had played a role in protection. Conclusions.  The simian analogue of the GOVX-B11 HIV provided strong protection against repeated rectal challenges in young adult macaques.

  12. EPS production and bioremoval of heavy metals by mixed and pure bacterial cultures isolated from Ankara Stream.

    PubMed

    Kiliç, Nur Koçberber; Kürkçü, Güliz; Kumruoğlu, Durna; Dönmez, Gönül

    2015-01-01

    This study is focused on isolation of Ni(II), Cu(II) and Cr(VI) resistant bacteria to assess their exopolysaccharide (EPS) production and related bioremoval capacities. Mixed cultures had higher heavy metal removal capacity in media with molasses (MAS) than the control cultures lacking this carbon (AS) containing 50 mg/l of heavy metal. The yields were 32%, 75.7%, and 51.1% in MAS, while the corresponding values were 29%, 55.1%, and 34.5% in AS, respectively. Purification of the strains 1, 5 and 6 present in the mixed cultures decreased the bioremoval capacities of the mixed culture samples, although these strains produced higher EPS amounts in MAS agar. Strain 5 had the highest Cu(II) (69.1%) and Cr(VI) (43.1%) removal rates at 25 mg/l initial concentration of each pollutant with EPS amounts of 0.74 g/l and 1.05 g/l, respectively. This strain was identified as Stenotrophomonas maltophilia. The presented data show that especially mixed and also pure cultures of bacterial strains isolated from Ankara Stream could be assessed as potential bioremoval agents in the treatment of Cu(II) or Cr(VI) containing wastewaters.

  13. Immunogenicity and protective efficacy of recombinant Modified Vaccinia virus Ankara candidate vaccines delivering West Nile virus envelope antigens.

    PubMed

    Volz, Asisa; Lim, Stephanie; Kaserer, Martina; Lülf, Anna; Marr, Lisa; Jany, Sylvia; Deeg, Cornelia A; Pijlman, Gorben P; Koraka, Penelope; Osterhaus, Albert D M E; Martina, Byron E; Sutter, Gerd

    2016-04-07

    West Nile virus (WNV) cycles between insects and wild birds, and is transmitted via mosquito vectors to horses and humans, potentially causing severe neuroinvasive disease. Modified Vaccinia virus Ankara (MVA) is an advanced viral vector for developing new recombinant vaccines against infectious diseases and cancer. Here, we generated and evaluated recombinant MVA candidate vaccines that deliver WNV envelope (E) antigens and fulfil all the requirements to proceed to clinical testing in humans. Infections of human and equine cell cultures with recombinant MVA demonstrated efficient synthesis and secretion of WNV envelope proteins in mammalian cells non-permissive for MVA replication. Prime-boost immunizations in BALB/c mice readily induced circulating serum antibodies binding to recombinant WNV E protein and neutralizing WNV in tissue culture infections. Vaccinations in HLA-A2.1-/HLA-DR1-transgenic H-2 class I-/class II-knockout mice elicited WNV E-specific CD8+ T cell responses. Moreover, the MVA-WNV candidate vaccines protected C57BL/6 mice against lineage 1 and lineage 2 WNV infection and induced heterologous neutralizing antibodies. Thus, further studies are warranted to evaluate these recombinant MVA-WNV vaccines in other preclinical models and use them as candidate vaccine in humans.

  14. [Modified vaccinia virus ankara (MVA)--development as recombinant vaccine and prospects for use in veterinary medicine].

    PubMed

    Volz, Asisa; Fux, Robert; Langenmayer, Martin C; Sutter, Gerd

    2015-01-01

    Poxviruses as expression vectors are widely used in medical research for the development of recombinant vaccines and molecular therapies. Here we review recent accomplishments in vaccine research using recombinant modified vaccinia virus ankara (MVA). MVA is a highly attenuated vaccinia virus strain that originated from serial tissue culture passage in chicken embryo fibroblasts more than 40 years ago. Growth adaptation to avian host cells caused deletions and mutations in the viral genome affecting about 15% of the original genetic information. In consequence, MVA is replication-deficient in cells of mammalian origin and fails to produce many of the virulence factors encoded by conventional vaccinia virus. Because of its safety for the general environment MVA can be handled under conditions of biosafety level one. Non-replicating MVA can enter any target cell and activate its molecular life cycle to express all classes of viral and recombinant genes. Therefore, recombinant MVA have been established as an extremely safe and efficient vector system for vaccine development in medical research. By now, various recombinant MVA vaccines have been found safe and immunogenic when used for phase I/II clinical testing in humans, and suitable for industrial scale production following good practice of manufacturing. Thus, there is an obvious usefulness of recombinant MVA vaccines for novel prophylactic and therapeutic approaches also in veterinary medicine. Results from first studies in companion and farm animals are highly promising.

  15. Modified vaccinia virus ankara (MVA) as production platform for vaccines against influenza and other viral respiratory diseases.

    PubMed

    Altenburg, Arwen F; Kreijtz, Joost H C M; de Vries, Rory D; Song, Fei; Fux, Robert; Rimmelzwaan, Guus F; Sutter, Gerd; Volz, Asisa

    2014-07-17

    Respiratory viruses infections caused by influenza viruses, human parainfluenza virus (hPIV), respiratory syncytial virus (RSV) and coronaviruses are an eminent threat for public health. Currently, there are no licensed vaccines available for hPIV, RSV and coronaviruses, and the available seasonal influenza vaccines have considerable limitations. With regard to pandemic preparedness, it is important that procedures are in place to respond rapidly and produce tailor made vaccines against these respiratory viruses on short notice. Moreover, especially for influenza there is great need for the development of a universal vaccine that induces broad protective immunity against influenza viruses of various subtypes. Modified Vaccinia Virus Ankara (MVA) is a replication-deficient viral vector that holds great promise as a vaccine platform. MVA can encode one or more foreign antigens and thus functions as a multivalent vaccine. The vector can be used at biosafety level 1, has intrinsic adjuvant capacities and induces humoral and cellular immune responses. However, there are some practical and regulatory issues that need to be addressed in order to develop MVA-based vaccines on short notice at the verge of a pandemic. In this review, we discuss promising novel influenza virus vaccine targets and the use of MVA for vaccine development against various respiratory viruses.

  16. Evaluation of the efficacy of modified vaccinia Ankara (MVA)/IMVAMUNE against aerosolized rabbitpox virus in a rabbit model.

    PubMed

    Garza, Nicole L; Hatkin, Josh M; Livingston, Virginia; Nichols, Donald K; Chaplin, Paul J; Volkmann, Ariane; Fisher, Diana; Nalca, Aysegul

    2009-09-04

    Infection of rabbits with aerosolized rabbitpox virus (RPXV) produces a disease similar to monkeypox and smallpox in humans and provides a valuable, informative model system to test medical countermeasures against orthopoxviruses. Due to the eradication of smallpox, the evaluation of the efficacy of new-generation smallpox vaccines depends on relevant well-developed animal studies for vaccine licensure. In this study, we tested the efficacy of IMVAMUNE [modified vaccinia Ankara-Bavarian Nordic (MVA-BN)] for protecting rabbits against aerosolized RPXV. Rabbits were vaccinated with either phosphate-buffered saline (PBS), Dryvax, a single low dose of IMVAMUNE, a single high dose of IMVAMUNE, or twice with a high dose of IMVAMUNE. Aerosol challenge with a lethal dose of RPXV was performed 4 weeks after the last vaccination. All PBS control animals succumbed to the disease or were euthanized because of the disease within 7 days postexposure. The rabbits vaccinated with Dryvax, a low dose of IMVAMUNE, or a single high dose of IMVAMUNE showed minimal to moderate clinical signs of the disease, but all survived the challenge. The only clinical sign displayed by rabbits that had been vaccinated twice with a high dose of IMVAMUNE was mild transient anorexia in just two out of eight rabbits. This study shows that IMVAMUNE can be a very effective vaccine against aerosolized RPXV.

  17. Biosafety aspects of modified vaccinia virus Ankara (MVA)-based vectors used for gene therapy or vaccination.

    PubMed

    Verheust, Céline; Goossens, Martine; Pauwels, Katia; Breyer, Didier

    2012-03-30

    The modified vaccinia virus Ankara (MVA) strain is a highly attenuated strain of vaccinia virus that has been demonstrated to be safe for humans. MVA is widely considered as the vaccinia virus strain of choice for clinical investigation because of its high safety profile. It also represents an excellent candidate for use as vector system in recombinant vaccine development for gene delivery or vaccination against infectious diseases or tumours, even in immunocompromised individuals. The use of MVA and recombinant MVA vectors must comply with various regulatory requirements, particularly relating to the assessment of potential risks for human health and the environment. The purpose of the present paper is to highlight some biological characteristics of MVA and MVA-based recombinant vectors and to discuss these from a biosafety point of view in the context of the European regulatory framework for genetically modified organisms with emphasis on the assessment of potential risks associated with environmental release. Copyright © 2012 Elsevier Ltd. All rights reserved.

  18. Socio-demographic and clinical profile of substance abuse patients admitted to an emergency department in Ankara, Turkey.

    PubMed

    Avci, Sema; Sarikaya, Ridvan; Kavak, Nezih; Özmen, Fatma Nihal; Aydin, Macit; Arslan, Engin Deniz; Büyükcam, Fatih

    2017-01-16

    Illicit drug abuse is an important health problem around the world. Cannabis is the most commonly used illicit drug, followed by amphetamines, opioids, and cocaine. In this study, we searched the socio-demographic features of drug abusers admitted to an emergency department. The study was performed in the emergency department of an education and training hospital in Ankara, Turkey. The socio-demographic features, substances commonly consumed, and the reason for the patients' presentation were recorded. The mean age of patients was 28.3±9.2. Of those under study, 93.3% were male; 68.7% were discharged from the emergency department after a short observation period; and 10.4% were hospitalized. The median age of the patients' first experience with illicit substances was 19 (4-56). Illicit drug use remains a significant medical health problem, not only in Turkey but also around the world. Abusers frequently seek emergency services, complaining of various symptoms, but generally do not mention their substance abuse. Emergency physicians must ask patients if they use abuse drugs.

  19. Modified Vaccinia Virus Ankara (MVA) as Production Platform for Vaccines against Influenza and Other Viral Respiratory Diseases

    PubMed Central

    Altenburg, Arwen F.; Kreijtz, Joost H. C. M.; de Vries, Rory D.; Song, Fei; Fux, Robert; Rimmelzwaan, Guus F.; Sutter, Gerd; Volz, Asisa

    2014-01-01

    Respiratory viruses infections caused by influenza viruses, human parainfluenza virus (hPIV), respiratory syncytial virus (RSV) and coronaviruses are an eminent threat for public health. Currently, there are no licensed vaccines available for hPIV, RSV and coronaviruses, and the available seasonal influenza vaccines have considerable limitations. With regard to pandemic preparedness, it is important that procedures are in place to respond rapidly and produce tailor made vaccines against these respiratory viruses on short notice. Moreover, especially for influenza there is great need for the development of a universal vaccine that induces broad protective immunity against influenza viruses of various subtypes. Modified Vaccinia Virus Ankara (MVA) is a replication-deficient viral vector that holds great promise as a vaccine platform. MVA can encode one or more foreign antigens and thus functions as a multivalent vaccine. The vector can be used at biosafety level 1, has intrinsic adjuvant capacities and induces humoral and cellular immune responses. However, there are some practical and regulatory issues that need to be addressed in order to develop MVA-based vaccines on short notice at the verge of a pandemic. In this review, we discuss promising novel influenza virus vaccine targets and the use of MVA for vaccine development against various respiratory viruses. PMID:25036462

  20. The prevalence of traumatic injuries treated in the pedodontic clinic of Ankara University, Turkey, during 18 months.

    PubMed

    Saroğlu, Işil; Sönmez, Hayriye

    2002-12-01

    The purpose of this study was to evaluate the type and prevalence of dental injuries referred to Ankara University, School of Dentistry, Department of Pedodontics, Turkey. One hundred and forty-seven patients with 234 traumatized teeth presented during 18-month interval. Of the 147 patients, 85 were boys and 62 were girls. The most frequent trauma occurred in the age of 11 years. The maxillary central incisors were found to be the most affected tooth in both primary and permanent dentition injuries. The maxillary arch is involved in a higher percentage of trauma cases (95.72%). The most common cause of injuries are falls (67.34%). In the primary dentition, the most common type of injury is extrusive luxation (38.23%) and in the permanent dentition, it is fracture of enamel-dentin without pulpal involvement (50.5%). From 147 patients, only 82 presented to our clinic within 1 h and 10 days after the injury time. It reveals that there is a need to inform the public of what they should do in cases of dental trauma, and how important it is to contact a dentist immediately.

  1. Toxic metals in breast milk samples from Ankara, Turkey: assessment of lead, cadmium, nickel, and arsenic levels.

    PubMed

    Gürbay, Aylin; Charehsaz, Mohammad; Eken, Ayşe; Sayal, Ahmet; Girgin, Gözde; Yurdakök, Murat; Yiğit, Şule; Erol, Dilek Demir; Şahin, Gönül; Aydın, Ahmet

    2012-10-01

    Toxic metals are one of the significant groups of chemical contaminants that humans are exposed to by oral, inhalation, and dermal routes. Exposure to these chemicals begins with intrauterine life and continues during lactation period at the first years of life. Breastfeeding has a much more special place than other nutrition options for infants. However, when possibility of contaminant transfer by breast milk is considered, its safety and quality is essential. Regarding infant and mother health and limited number of information on this field in Turkey, measuring contamination levels in breast milk is important. Therefore, in the present study, lead (Pb), cadmium (Cd), nickel (Ni), and arsenic (As) levels were measured by atomic absorption spectrometry in 64 breast milk samples obtained from mothers from Ankara, Turkey. Pb and Ni levels in breast milk samples were found to be 391.45±269.01 μg/l and 43.94±33.82 μg/l (mean ± SD), respectively. Cd was found only in one of 64 samples, and the level was 4.62 μg/l. As level was below the limit of quantification (LOQ, 7.6 μg/l) in all samples. These findings will accurately direct strategies and solutions of protection against contaminants in order to reduce their levels in biological fluids.

  2. Cross-protective immunity against multiple influenza virus subtypes by a novel modified vaccinia Ankara (MVA) vectored vaccine in mice.

    PubMed

    Brewoo, Joseph N; Powell, Tim D; Jones, Jeremy C; Gundlach, Nancy A; Young, Ginger R; Chu, Haiyan; Das, Subash C; Partidos, Charalambos D; Stinchcomb, Dan T; Osorio, Jorge E

    2013-04-03

    Development of an influenza vaccine that provides cross-protective immunity remains a challenge. Candidate vaccines based on a recombinant modified vaccinia Ankara (MVA) viral vector expressing antigens from influenza (MVA/Flu) viruses were constructed. A vaccine candidate, designated MVA/HA1/C13L/NP, that expresses the hemagglutinin from pandemic H1N1 (A/California/04/09) and the nucleoprotein (NP) from highly pathogenic H5N1 (A/Vietnam/1203/04) fused to a secretory signal sequence from vaccinia virus was highly protective. The vaccine elicited strong antibody titers to homologous H1N1 viruses while cross-reactive antibodies to heterologous viruses were not detectable. In mice, this MVA/HA1/C13L/NP vaccine conferred complete protection against lethal challenge with A/Vietnam/1203/04 (H5N1), A/Norway/3487-2/09 (pandemic H1N1) or A/Influenza/Puerto Rico/8/34 (seasonal H1N1) and partial protection (57.1%) against challenge with seasonal H3N2 virus (A/Aichi/68). The protective efficacy of the vaccine was not affected by pre-existing immunity to vaccinia. Our findings highlight MVA as suitable vector to express multiple influenza antigens that could afford broad cross-protective immunity against multiple subtypes of influenza virus.

  3. Immunogenicity of modified vaccinia virus Ankara expressing the hemagglutinin stalk domain of pandemic (H1N1) 2009 influenza virus.

    PubMed

    Di Mario, Giuseppina; Soprana, Elisa; Gubinelli, Francesco; Panigada, Maddalena; Facchini, Marzia; Fabiani, Concetta; Garulli, Bruno; Basileo, Michela; Cassone, Antonio; Siccardi, Antonio; Donatelli, Isabella; Castrucci, Maria R

    2017-03-01

    Vaccination offers protection against influenza, although current vaccines need to be reformulated each year. The development of a broadly protective influenza vaccine would guarantee the induction of heterosubtypic immunity also against emerging influenza viruses of a novel subtype. Vaccine candidates based on the stalk region of the hemagglutinin (HA) have the potential to induce broad and persistent protection against diverse influenza A viruses. Modified vaccinia virus Ankara (MVA) expressing a headless HA (hlHA) of A/California/4/09 (CA/09) virus was used as a vaccine to immunize C57BL/6 mice. Specific antibody and cell-mediated immune responses were determined, and challenge experiments were performed by infecting vaccinated mice with CA/09 virus. Immunization of mice with CA/09-derived hlHA, vectored by MVA, was able to elicit influenza-specific broad cross-reactive antibodies and cell-mediated immune responses, but failed to induce neutralizing antibodies and did not protect mice against virus challenge. Although highly immunogenic, our vaccine was unable to induce a protective immunity against influenza. A misfolded and unstable conformation of the hlHA molecule may have affected its capacity of inducing neutralizing antiviral, conformational antibodies. Design of stable hlHA-based immunogens and their delivery by recombinant MVA-based vectors has the potential of improving this promising approach for a universal influenza vaccine.

  4. Strong, but Age-Dependent, Protection Elicited by a Deoxyribonucleic Acid/Modified Vaccinia Ankara Simian Immunodeficiency Virus Vaccine

    PubMed Central

    Chamcha, Venkateswarlu; Kannanganat, Sunil; Gangadhara, Sailaja; Nabi, Rafiq; Kozlowski, Pamela A.; Montefiori, David C.; LaBranche, Celia C.; Wrammert, Jens; Keele, Brandon F.; Balachandran, Harikrishnan; Sahu, Sujata; Lifton, Michelle; Santra, Sampa; Basu, Rahul; Moss, Bernard; Robinson, Harriet L.; Amara, Rama Rao

    2016-01-01

    Background. In this study, we analyzed the protective efficacy of a simian immunodeficiency virus (SIV) macaque 239 (SIVmac239) analogue of the clinically tested GOVX-B11 deoxyribonucleic acid (DNA)/modified vaccinia Ankara (MVA) human immunodeficiency virus vaccine. Methods. The tested vaccine used a DNA immunogen mutated to mimic the human vaccine and a regimen with DNA deliveries at weeks 0 and 8 and MVA deliveries at weeks 16 and 32. Twelve weekly rectal challenges with 0.3 animal infectious doses of SIV sootey mangabey E660 (SIVsmE660) were administered starting at 6 months after the last immunization. Results. Over the first 6 rectal exposures to SIVsmE660, <10-year-old tripartite motif-containing protein 5 (TRIM5)α-permissive rhesus macaques showed an 80% reduction in per-exposure risk of infection as opposed to a 46% reduction in animals over 10 years old; and, over the 12 challenges, they showed a 72% as opposed to a 10% reduction. Analyses of elicited immune responses suggested that higher antibody responses in the younger animals had played a role in protection. Conclusions. The simian analogue of the GOVX-B11 HIV provided strong protection against repeated rectal challenges in young adult macaques. PMID:27006959

  5. Post-Paleogene (post-Middle Eocene-pre-Miocene) Geodynamic evolution of the Upper Cretaceous-Paleogene Basins in Central Anatolia, Turkey

    NASA Astrophysics Data System (ADS)

    Rojay, Bora

    2017-04-01

    Central Anatolia is one of the key areas on the evolution of Cretaceous-Paleogene Tethys where stratigraphy of the region is well studied. However not well linked with tectonics. The so-called "Ankara Mélange" belt (AOM) and the basins on top are important elements in the understanding of the İzmir-Ankara-Erzincan suture belt (İAES) evolution in Anatolia (Turkey) and in the evolution of Tethys in minor Asia (Turkey). Some of the basins are directly situated on top of the tectonic slices of the accretionary prism (IAES). However, some are not tectonically well explained as in the case of Haymana basin. The southern continental fragments (eg. Kütahya-Bolkardaǧ and Kırşehir blocks from Gondwana) are approaching to northern continents (Pontides of Lauriasia) where basins like Haymana, Alçı, Kırıkkale and Orhaniye extensional basins are evolved in between the closing margins of two continents. Haymana basin is an extensional basin developed under contractional regime on top of both northward subducting oceanic fragments and an approaching fragments of southern continents. Paleogene (end of Eocene) is the time where the Seas were retreated to S-SE Anatolia leaving a continental setting in Anatolia during Oligocene-Miocene. The slip data gathered from the faults cross-cutting the Paleogene Units and the fabric from Cretaceous mélanges depicts a NNW-SSE to NNE-SSW compressional stress regime operated during post-Eocene-pre-Miocene period. Lately the slip surfaces were overprinted by post-Pliocene normal faulting. Key words: fault slip data, Paleogene, NNW-SSE compression, Anatolia.

  6. Three-Year Durability of Immune Responses Induced by HIV-DNA and HIV-Modified Vaccinia Virus Ankara and Effect of a Late HIV-Modified Vaccinia Virus Ankara Boost in Tanzanian Volunteers.

    PubMed

    Joachim, Agricola; Munseri, Patricia J; Nilsson, Charlotta; Bakari, Muhammad; Aboud, Said; Lyamuya, Eligius F; Tecleab, Teghesti; Liakina, Valentina; Scarlatti, Gabriella; Robb, Merlin L; Earl, Patricia L; Moss, Bernard; Wahren, Britta; Mhalu, Fred; Ferrari, Guido; Sandstrom, Eric; Biberfeld, Gunnel

    2017-01-27

    We explored the duration of immune responses and the effect of a late third HIV-modified vaccinia virus Ankara (MVA) boost in HIV-DNA primed and HIV-MVA boosted Tanzanian volunteers. Twenty volunteers who had previously received three HIV-DNA and two HIV-MVA immunizations were given a third HIV-MVA immunization 3 years after the second HIV-MVA boost. At the time of the third HIV-MVA, 90% of the vaccinees had antibodies to HIV-1 subtype C gp140 (median titer 200) and 85% to subtype B gp160 (median titer 100). The majority of vaccinees had detectable antibody-dependent cellular cytotoxicity (ADCC)-mediating antibodies, 70% against CRF01_AE virus-infected cells (median titer 239) and 84% against CRF01_AE gp120-coated cells (median titer 499). A high proportion (74%) of vaccinees had IFN-γ ELISpot responses, 63% to Gag and 42% to Env, 3 years after the second HIV-MVA boost. After the third HIV-MVA, there was an increase in Env-binding antibodies and ADCC-mediating antibodies relative to the response seen at the time of the third HIV-MVA vaccination, p < .0001 and p < .05, respectively. The frequency of IFN-γ ELISpot responses increased to 95% against Gag or Env and 90% to both Gag and Env, p = .064 and p = .002, respectively. In conclusion, the HIV-DNA prime/HIV-MVA boost regimen elicited potent antibody and cellular immune responses with remarkable durability, and a third HIV-MVA immunization significantly boosted both antibody and cellular immune responses relative to the levels detected at the time of the third HIV-MVA, but not to higher levels than after the second HIV-MVA.

  7. Broad and potent cellular and humoral immune responses after a second late HIV-modified vaccinia virus ankara vaccination in HIV-DNA-primed and HIV-modified vaccinia virus Ankara-boosted Swedish vaccinees.

    PubMed

    Nilsson, Charlotta; Godoy-Ramirez, Karina; Hejdeman, Bo; Bråve, Andreas; Gudmundsdotter, Lindvi; Hallengärd, David; Currier, Jeffrey R; Wieczorek, Lindsay; Hasselrot, Klara; Earl, Patricia L; Polonis, Victoria R; Marovich, Mary A; Robb, Merlin L; Sandström, Eric; Wahren, Britta; Biberfeld, Gunnel

    2014-03-01

    We have previously shown that an HIV vaccine regimen including three HIV-DNA immunizations and a single HIV-modified vaccinia virus Ankara (MVA) boost was safe and highly immunogenic in Swedish volunteers. A median 38 months after the first HIV-MVA vaccination, 24 volunteers received 10(8) plaque-forming units of HIV-MVA. The vaccine was well tolerated. Two weeks after this HIV-MVA vaccination, 18 (82%) of 22 evaluable vaccinees were interferon (IFN)-γ enzyme-linked immunospot (ELISpot) reactive: 18 to Gag and 10 (45%) to Env. A median minimal epitope count of 4 to Gag or Env was found in a subset of 10 vaccinees. Intracellular cytokine staining revealed CD4(+) and/or CD8(+) T cell responses in 23 (95%) of 24 vaccinees, 19 to Gag and 19 to Env. The frequency of HIV-specific CD4(+) and CD8(+) T cell responses was equally high (75%). A high proportion of CD4(+) and CD8(+) T cell responses to Gag was polyfunctional with production of three or more cytokines (40% and 60%, respectively). Of the Env-specific CD4(+) T cells 40% were polyfunctional. Strong lymphoproliferative responses to Aldrithiol-2 (AT-2)-treated subtype A, B, C, and A_E virus were demonstrable in 21 (95%) of 22 vaccinees. All vaccinees developed binding antibodies to Env and Gag. Neutralizing antibodies were detected in a peripheral blood mononuclear cell (PBMC)-based assay against subtype B and CRF01_AE viruses. The neutralizing antibody response rates were influenced by the vaccine dose and/or mode of delivery used at the previous HIV-MVA vaccination. Thus, a second late HIV-MVA boost induced strong and broad cellular immune responses and improved antibody responses. The data support further exploration of this vaccine concept.

  8. Broad and Potent Cellular and Humoral Immune Responses After a Second Late HIV-Modified Vaccinia Virus Ankara Vaccination in HIV-DNA-Primed and HIV-Modified Vaccinia Virus Ankara-Boosted Swedish Vaccinees

    PubMed Central

    Godoy-Ramirez, Karina; Hejdeman, Bo; Bråve, Andreas; Gudmundsdotter, Lindvi; Hallengärd, David; Currier, Jeffrey R.; Wieczorek, Lindsay; Hasselrot, Klara; Earl, Patricia L.; Polonis, Victoria R.; Marovich, Mary A.; Robb, Merlin L.; Sandström, Eric; Wahren, Britta; Biberfeld, Gunnel

    2014-01-01

    Abstract We have previously shown that an HIV vaccine regimen including three HIV-DNA immunizations and a single HIV-modified vaccinia virus Ankara (MVA) boost was safe and highly immunogenic in Swedish volunteers. A median 38 months after the first HIV-MVA vaccination, 24 volunteers received 108 plaque-forming units of HIV-MVA. The vaccine was well tolerated. Two weeks after this HIV-MVA vaccination, 18 (82%) of 22 evaluable vaccinees were interferon (IFN)-γ enzyme-linked immunospot (ELISpot) reactive: 18 to Gag and 10 (45%) to Env. A median minimal epitope count of 4 to Gag or Env was found in a subset of 10 vaccinees. Intracellular cytokine staining revealed CD4+ and/or CD8+ T cell responses in 23 (95%) of 24 vaccinees, 19 to Gag and 19 to Env. The frequency of HIV-specific CD4+ and CD8+ T cell responses was equally high (75%). A high proportion of CD4+ and CD8+ T cell responses to Gag was polyfunctional with production of three or more cytokines (40% and 60%, respectively). Of the Env-specific CD4+ T cells 40% were polyfunctional. Strong lymphoproliferative responses to Aldrithiol-2 (AT-2)-treated subtype A, B, C, and A_E virus were demonstrable in 21 (95%) of 22 vaccinees. All vaccinees developed binding antibodies to Env and Gag. Neutralizing antibodies were detected in a peripheral blood mononuclear cell (PBMC)-based assay against subtype B and CRF01_AE viruses. The neutralizing antibody response rates were influenced by the vaccine dose and/or mode of delivery used at the previous HIV-MVA vaccination. Thus, a second late HIV-MVA boost induced strong and broad cellular immune responses and improved antibody responses. The data support further exploration of this vaccine concept. PMID:24090081

  9. Safety and Immunogenicity of Modified Vaccinia Ankara in Hematopoietic Stem Cell Transplant Recipients: A Randomized, Controlled Trial

    PubMed Central

    Walsh, Stephen R.; Wilck, Marissa B.; Dominguez, David J.; Zablowsky, Elise; Bajimaya, Shringkhala; Gagne, Lisa S.; Verrill, Kelly A.; Kleinjan, Jane A.; Patel, Alka; Zhang, Ying; Hill, Heather; Acharyya, Aruna; Fisher, David C.; Antin, Joseph H.; Seaman, Michael S.; Dolin, Raphael; Baden, Lindsey R.

    2013-01-01

    Background. Modified vaccinia Ankara (MVA-BN, IMVAMUNE) is emerging as a primary immunogen and as a delivery system to treat or prevent a wide range of diseases. Defining the safety and immunogenicity of MVA-BN in key populations is therefore important. Methods. We performed a dose-escalation study of MVA-BN administered subcutaneously in 2 doses, one on day 0 and another on day 28. Twenty-four hematopoietic stem cell transplant recipients were enrolled sequentially into the study, and vaccine or placebo was administered under a randomized, double-blind allocation. Ten subjects received vaccine containing 107 median tissue culture infective doses (TCID50) of MVA-BN, 10 subjects received vaccine containing 108 TCID50 of MVA-BN, and 4 subjects received placebo. Results. MVA-BN was generally well tolerated at both doses. No vaccine-related serious adverse events were identified. Transient local reactogenicity was more frequently seen at the higher dose. Neutralizing antibodies (NAb) to Vaccinia virus (VACV) were elicited by both doses of MVA-BN and were greater for the higher dose. Median peak anti-VACV NAb titers were 1:49 in the lower-dose group and 1:118 in the higher-dose group. T-cell immune responses to VACV were detected by an interferon γ enzyme-linked immunosorbent spot assay and were higher in the higher-dose group. Conclusions. MVA-BN is safe, well tolerated, and immunogenic in HSCT recipients. These data support the use of 108 TCID50 of MVA-BN in this population. Clinical Trials Registration. NCT00565929. PMID:23482644

  10. Safety and immunogenicity of mammalian cell derived and Modified Vaccinia Ankara vectored African swine fever subunit antigens in swine.

    PubMed

    Lopera-Madrid, Jaime; Osorio, Jorge E; He, Yongqun; Xiang, Zuoshuang; Adams, L Garry; Laughlin, Richard C; Mwangi, Waithaka; Subramanya, Sandesh; Neilan, John; Brake, David; Burrage, Thomas G; Brown, William Clay; Clavijo, Alfonso; Bounpheng, Mangkey A

    2017-03-01

    A reverse vaccinology system, Vaxign, was used to identify and select a subset of five African Swine Fever (ASF) antigens that were successfully purified from human embryonic kidney 293 (HEK) cells and produced in Modified vaccinia virus Ankara (MVA) viral vectors. Three HEK-purified antigens [B646L (p72), E183L (p54), and O61R (p12)], and three MVA-vectored antigens [B646L, EP153R, and EP402R (CD2v)] were evaluated using a prime-boost immunization regimen swine safety and immunogenicity study. Antibody responses were detected in pigs following prime-boost immunization four weeks apart with the HEK-293-purified p72, p54, and p12 antigens. Notably, sera from the vaccinees were positive by immunofluorescence on ASFV (Georgia 2007/1)-infected primary macrophages. Although MVA-vectored p72, CD2v, and EP153R failed to induce antibody responses, interferon-gamma (IFN-γ(+)) spot forming cell responses against all three antigens were detected one week post-boost. The highest IFN-γ(+) spot forming cell responses were detected against p72 in pigs primed with MVA-p72 and boosted with the recombinant p72. Antigen-specific (p12, p72, CD2v, and EP153R) T-cell proliferative responses were also detected post-boost. Collectively, these results are the first demonstration that ASFV subunit antigens purified from mammalian cells or expressed in MVA vectors are safe and can induce ASFV-specific antibody and T-cell responses following a prime-boost immunization regimen in swine. Copyright © 2017 Elsevier B.V. All rights reserved.

  11. A Novel Naturally Occurring Tandem Promoter in Modified Vaccinia Virus Ankara Drives Very Early Gene Expression and Potent Immune Responses

    PubMed Central

    Wennier, Sonia T.; Brinkmann, Kay; Steinhäußer, Charlotte; Mayländer, Nicole; Mnich, Claudia; Wielert, Ursula; Dirmeier, Ulrike; Hausmann, Jürgen; Chaplin, Paul; Steigerwald, Robin

    2013-01-01

    Modified vaccinia virus Ankara (MVA) has been shown to be suitable for the generation of experimental vaccines against cancer and infectious diseases, eliciting strong humoral and cellular immune responses. In viral vectored vaccines, strong recombinant antigen expression and timing of expression influence the quantity and quality of the immune response. Screening of synthetic and native poxvirus promoters for strong protein expression in vitro and potent immune responses in vivo led to the identification of the MVA13.5L promoter, a unique and novel naturally occurring tandem promoter in MVA composed of two 44 nucleotide long repeated motifs, each containing an early promoter element. The MVA13.5L gene is highly conserved across orthopoxviruses, yet its function is unknown. The unique structure of its promoter is not found for any other gene in the MVA genome and is also conserved in other orthopoxviruses. Comparison of the MVA13.5L promoter activity with synthetic poxviral promoters revealed that the MVA13.5L promoter produced higher levels of protein early during infection in HeLa cells and particularly in MDBK cells, a cell line in which MVA replication stops at an early stage before the expression of late genes. Finally, a recombinant antigen expressed under the control of this novel promoter induced high antibody titers and increased CD8 T cell responses in homologous prime-boost immunization compared to commonly used promoters. In particular, the recombinant antigen specific CD8 T cell responses dominated over the immunodominant B8R vector-specific responses after three vaccinations and even more during the memory phase. These results have identified the native MVA13.5L promoter as a new potent promoter for use in MVA vectored preventive and therapeutic vaccines. PMID:23951355

  12. Transduction of human dendritic cells with a recombinant modified vaccinia Ankara virus encoding MUC1 and IL-2.

    PubMed

    Trevor, K T; Hersh, E M; Brailey, J; Balloul, J M; Acres, B

    2001-10-01

    The epithelial mucin MUC1 is considered an opportune target antigen for cancer immunotherapy, as it is over-expressed and exhibits aberrant glycosylation in malignant cells. Because dendritic cells (DC) are powerful initiators of immune responses, efforts have focused on tumor antigen-bearing DC as potent cancer vaccines. In this study we have characterized the transduction of monocyte-derived DC with a highly attenuated vaccinia virus vector [modified vaccinia Ankara (MVA)] encoding human MUC1 and the immunostimulatory cytokine IL-2. Analysis of transduced DC cultures generated from a number of donors revealed MUC1 expression in the range of 27-54% of the cells and a co-regulated secretion of bioactive IL-2. As shown by FACS analysis with MUCI-specific antibodies, the MVA-MUC1/IL-2-transduced DC predominantly expressed the fully processed glycoform of MUC1, typical of that displayed by normal epithelia. Over a 3-day period after transduction, transgene expression declined concurrent with an increase in MVA-induced cytopathic effects. The transduced DC stimulated allogeneic lymphocyte proliferation, indicating that DC immunostimulatory function is not impaired by vector transduction. In the presence of IL-2, MVA-transduced DC were able to enhance autologous lymphocyte proliferation. Also, vector expression was analyzed in DC cultures treated with TNF-alpha, a known DC maturation factor. As indicated by the up-regulation of several DC maturation markers, neither virus infection nor transgene expression influenced the maturation capacity of the cells. The MVA-MUC1/IL-2 vector effectively transduced both immature and TNF-alpha-matured DC. Overall, our results are encouraging for the clinical application of MVA-MUC1/IL-2-transduced DC.

  13. Sarcopenia prevalence and factors associated with sarcopenia in older people living in a nursing home in Ankara Turkey.

    PubMed

    Yalcin, Ahmet; Aras, Sevgi; Atmis, Volkan; Cengiz, Ozlem Karaarslan; Varli, Murat; Cinar, Esat; Atli, Teslime

    2016-08-01

    Sarcopenia is prevalent in older people, and is related to survival and disability. There are no data on sarcopenia evaluated according to European Working Group on Sarcopenia in Older People criteria for nursing home residents in Turkey. We aimed to evaluate the prevalence of sarcopenia according to European Working Group on Sarcopenia in Older People criteria and associated factors with sarcopenia among nursing home residents in Turkey. The study cohort consisted of individuals aged over 65 years and living in the Seyranbağları Nursing Home and Rehabilitation Center in Ankara, Turkey. Besides demographic and medical data, Mini-Mental State Examination, activities of daily living, Mini-Nutritional Assessment, body mass index, calf circumference, gait speed and handgrip strength were also investigated. Muscle mass was evaluated by bioelectrical impedance analysis. Sarcopenia was diagnosed according to European Working Group on Sarcopenia in Older People criteria. A total of 141 older individuals were evaluated. Sarcopenia was found in 29% (n = 41) of the participants. Participants with sarcopenia were older and had low scores for activities of daily living, low body mass index, greater cognitive dysfunction, high malnutrition risk and low calf circumference. Body mass index and calf circumference were found to be associated with sarcopenia in multivariate logistic regression analysis. Almost one-third of older nursing home residents were diagnosed with sarcopenia according to European Working Group on Sarcopenia in Older People criteria in this study in Turkey. Calf circumference and body mass index were associated with increased risk of sarcopenia among nursing home residents. This is the first study evaluating sarcopenia using European Working Group on Sarcopenia in Older People criteria in Turkey. Geriatr Gerontol Int 2016; 16: 903-910. © 2015 Japan Geriatrics Society.

  14. A modified vaccinia Ankara vaccine vector expressing a mosaic H5 hemagglutinin reduces viral shedding in rhesus macaques.

    PubMed

    Florek, Nicholas W; Kamlangdee, Attapon; Mutschler, James P; Kingstad-Bakke, Brock; Schultz-Darken, Nancy; Broman, Karl W; Osorio, Jorge E; Friedrich, Thomas C

    2017-01-01

    The rapid antigenic evolution of influenza viruses requires frequent vaccine reformulations. Due to the economic burden of continuous vaccine reformulation and the threat of new pandemics, there is intense interest in developing vaccines capable of eliciting broadly cross-reactive immunity to influenza viruses. We recently constructed a "mosaic" hemagglutinin (HA) based on subtype 5 HA (H5) and designed to stimulate cellular and humoral immunity to multiple influenza virus subtypes. Modified vaccinia Ankara (MVA) expressing this H5 mosaic (MVA-H5M) protected mice against multiple homosubtypic H5N1 strains and a heterosubtypic H1N1 virus. To assess its potential as a human vaccine we evaluated the ability of MVA-H5M to provide heterosubtypic immunity to influenza viruses in a non-human primate model. Rhesus macaques received an initial dose of either MVA-H5M or plasmid DNA encoding H5M, followed by a boost of MVA-H5M, and then were challenged, together with naïve controls, with the heterosubtypic virus A/California/04/2009 (H1N1pdm). Macaques receiving either vaccine regimen cleared H1N1pdm challenge faster than naïve controls. Vaccination with H5M elicited antibodies that bound H1N1pdm HA, but did not neutralize the H1N1pdm challenge virus. Plasma from vaccinated macaques activated NK cells in the presence of H1N1pdm HA, suggesting that vaccination elicited cross-reactive antibodies capable of mediating antibody-dependent cell-mediated cytotoxicity (ADCC). Although HA-specific T cell responses to the MVA-H5M vaccine were weak, responses after challenge were stronger in vaccinated macaques than in control animals. Together these data suggest that mosaic HA antigens may provide a means for inducing broadly cross-reactive immunity to influenza viruses.

  15. A modified vaccinia Ankara vaccine vector expressing a mosaic H5 hemagglutinin reduces viral shedding in rhesus macaques

    PubMed Central

    Mutschler, James P.; Kingstad-Bakke, Brock; Schultz-Darken, Nancy; Broman, Karl W.; Osorio, Jorge E.

    2017-01-01

    The rapid antigenic evolution of influenza viruses requires frequent vaccine reformulations. Due to the economic burden of continuous vaccine reformulation and the threat of new pandemics, there is intense interest in developing vaccines capable of eliciting broadly cross-reactive immunity to influenza viruses. We recently constructed a “mosaic” hemagglutinin (HA) based on subtype 5 HA (H5) and designed to stimulate cellular and humoral immunity to multiple influenza virus subtypes. Modified vaccinia Ankara (MVA) expressing this H5 mosaic (MVA-H5M) protected mice against multiple homosubtypic H5N1 strains and a heterosubtypic H1N1 virus. To assess its potential as a human vaccine we evaluated the ability of MVA-H5M to provide heterosubtypic immunity to influenza viruses in a non-human primate model. Rhesus macaques received an initial dose of either MVA-H5M or plasmid DNA encoding H5M, followed by a boost of MVA-H5M, and then were challenged, together with naïve controls, with the heterosubtypic virus A/California/04/2009 (H1N1pdm). Macaques receiving either vaccine regimen cleared H1N1pdm challenge faster than naïve controls. Vaccination with H5M elicited antibodies that bound H1N1pdm HA, but did not neutralize the H1N1pdm challenge virus. Plasma from vaccinated macaques activated NK cells in the presence of H1N1pdm HA, suggesting that vaccination elicited cross-reactive antibodies capable of mediating antibody-dependent cell-mediated cytotoxicity (ADCC). Although HA-specific T cell responses to the MVA-H5M vaccine were weak, responses after challenge were stronger in vaccinated macaques than in control animals. Together these data suggest that mosaic HA antigens may provide a means for inducing broadly cross-reactive immunity to influenza viruses. PMID:28771513

  16. Modified vaccinia virus ankara triggers chemotaxis of monocytes and early respiratory immigration of leukocytes by induction of CCL2 expression.

    PubMed

    Lehmann, Michael H; Kastenmuller, Wolfgang; Kandemir, Judith D; Brandt, Florian; Suezer, Yasemin; Sutter, Gerd

    2009-03-01

    Orthopoxviruses commonly enter into humans and animals via the respiratory tract. Herein, we show that immigration of leukocytes into the lung is triggered via intranasal infection of mice with modified vaccinia virus Ankara (MVA) and not with the vaccinia virus (VACV) Elstree, Wyeth, or Western Reserve (WR) strain. Immigrating cells were identified as monocytes, neutrophils, and CD4(+) lymphocytes by flow cytometry and could be detected 24 h and 48 h postinfection. Using an in vitro chemotaxis assay, we confirmed that infection with MVA induces the expression of a soluble chemotactic factor for monocytes, identified as CCL2 (monocyte chemotactic protein-1 [MCP-1]). In contrast to infection with several other VACV strains, MVA induced the expression of CCL2, CCL3, CCL4, and CXCL10 in the human monocytic cell line THP-1 as well as in primary human monocytes. Thus, MVA, and not the VACV Elstree, Wyeth, or WR strain, consistently triggered the expression of a panel of chemokines, including CCL2, in the murine lung, correlating considerably with the immigration of leukocytes. Using CCL2-deficient mice, we demonstrate that CCL2 plays a key role in MVA-triggered respiratory immigration of leukocytes. Moreover, UV irradiation of MVA prevented CCL2 expression in vitro and in vivo as well as respiratory immigration of leukocytes, demonstrating the requirement for an activated molecular viral life cycle. We propose that MVA-triggered chemokine expression causes early immigration of leukocytes to the site of infection, a feature that is important for rapid immunization and its safety and efficiency as a viral vector.

  17. Species distribution and detection of Crimean Congo Hemorrhagic Fever Virus (CCHFV) in field-collected ticks in Ankara Province, Central Anatolia, Turkey.

    PubMed

    Hekimoglu, Olcay; Ozer, Nurdan; Ergunay, Koray; Ozkul, Aykut

    2012-01-01

    Ticks may act as vectors for a number of infectious diseases including Crimean Congo Hemorrhagic Fever (CCHF). The causative agent is Crimean Congo Hemorrhagic Fever Virus (CCHFV), a member of Bunyaviridae, causing extensive ecchymosis, visceral bleeding and hepatic dysfunction with a high fatality rate in the affected individuals. CCHF was initially recognized in Turkey in 2002 and the current number of reported cases exceeds 4,400. This study was conducted to confirm the presence of tick species established as potential CCHFV vectors and investigate CCHFV activity in ticks at Ankara province, Turkey's second most-densely populated province, where CCHF cases were demonstrated. A total of 1,196 adult ticks, collected from various animals and vegetation in 12 sites located in 5 counties of Ankara during April-July 2010 were identified to species level. Twenty-two tick pools from county K2 were also evaluated for the presence of CCHFV RNA via a one-step real-time RT-PCR assay and reactive results were further confirmed by an in house nested RT-PCR assay. Nine tick species were identified: Rhipicephalus bursa (44.9%), R. sanguineus (18.9%), R. turanicus (18.1%), Haemaphysalis parva (8.3%), Hyalomma marginatum marginatum (5.4%), H. aegyptium (1.4%), H. anatolicum excavatum (1.3%), Hae. punctata (0.3%) and Dermacentor marginatus (0.2%). A total of five tick pools (22.7%) were reactive in real-time and nested RT-PCR assays. The pools included R. bursa, H. m. marginatum and Hae. parva ticks, collected from mammal hosts from two villages in one county. This is the first documentation of CCHFV activity in ticks from Ankara province, which indicates requirement for detailed surveillance to predict high risk zones in the region.

  18. The Age and Geodynamic Evolution of the Metamorphic sole rocks from Izmir-Ankara-Erzıncan suture zone (Northern-Turkey)

    NASA Astrophysics Data System (ADS)

    Melih Çörtük, Rahmi; Faruk Çelik, Ömer; Özkan, Mutlu; Sherlock, Sarah C.; Marzoli, Andrea; Altıntaş, İsmail Emir; Topuz, Gültekin

    2016-04-01

    The İzmir-Ankara-Erzincan suture zone in northern Turkey is one of the major tectonic zones separating the Pontides to the North from the Anatolide-Tauride block and Kı rşehir Massif to the South. The accretionary complex of the İzmir-Ankara-Erzincan suture zone, near Artova, is composed mainly of peridotites with varying degree serpentinization, metamorphic rocks, basalt, sandstones, pelagic and neritic limestones. The metamorphic rocks are represented by amphibolite, garnet micaschit, calc-schist and marble. The metamorphic rocks were interpreted as the metamorphic sole rocks. Because; (i) They are tectonically located beneath the serpentinized peridotites. (ii) Foliation planes of both the amphibolites and mantle tectonites are parallel to each other. (iii) The metamorphic rocks are crosscut by non-metamorphic dolerite dikes which exhibite Nb and Ta depletion relative to Th enrichment on the N-MORB normalized multi-element spider diagram. The dolerite dikes display flat REE patterns (LaN/YbN=0.85-1.24). These geochemical signatures of the dolerite dikes are indicative of subduction component during their occurrences. Geochemical observations of the amphibolites suggest E-MORB- and OIB-like signatures (LaN/SmN= 1.39-3.14) and their protoliths are represented by basalt and alkali basaltic rocks. Amphiboles from the amphibolites are represented by calcic amphiboles (magnesio-hornblende, tchermakite and tremolite) and they yielded 40Ar-39Ar ages between 157.8 ± 3.6 Ma and 139 ± 11 Ma. These cooling ages were interpreted to be the intra-oceanic subduction/thrusting time of the İzmir-Ankara-Erzincan oceanic domain. This study was funded by TÜBİTAK (Project no: 112Y123).

  19. San Mateo Creek Basin

    EPA Pesticide Factsheets

    The San Mateo Creek Basin comprises approximately 321 square miles within the Rio San Jose drainage basin in McKinley and Cibola counties, New Mexico. This basin is located within the Grants Mining District (GMD).

  20. Safety, immunogenicity and efficacy of modified vaccinia Ankara (MVA) against Dryvax challenge in vaccinia-naïve and vaccinia-immune individuals.

    PubMed

    Parrino, Janie; McCurdy, Lewis H; Larkin, Brenda D; Gordon, Ingelise J; Rucker, Steven E; Enama, Mary E; Koup, Richard A; Roederer, Mario; Bailer, Robert T; Moodie, Zoe; Gu, Lin; Yan, Lihan; Graham, Barney S

    2007-02-09

    Modified vaccinia Ankara (MVA) was evaluated as an alternative to Dryvax in vaccinia-naïve and vaccinia-immune adult volunteers. Subjects received intramuscular MVA or placebo followed by Dryvax challenge at 3 months. Two or more doses of MVA prior to Dryvax reduced severity of lesion formation, decreased magnitude and duration of viral shedding, and augmented post-Dryvax vaccinia-specific CD8(+) T cell responses and extracellular enveloped virus protein-specific antibody responses. MVA vaccination is safe and immunogenic and improves the safety and immunogenicity of subsequent Dryvax vaccination supporting the potential for using MVA as a vaccine in the general population to improve immunity to orthopoxviruses.

  1. C5-C12 volatile organic compounds at roadside, residential, and background locations in Ankara, Turkey: temporal and spatial variations and sources.

    PubMed

    Kuntasal, Oznur Oğuz; Kilavuz, Seda Aslan; Karman, Deniz; Wang, Daniel; Tuncel, Gürdal

    2013-10-01

    Concentrations of 91 volatile organic compounds (VOCs) ranging from C5 to C12 were measured at three sites in Ankara, the capital of Turkey, in the summer of 2003 and winter of 2004. Samples were collected at roadside, residential and background stations at consecutive 4-hr intervals over a 24-hr period for six weeks in each season. Air samples were collected onto cartridges packed with Tenax TA and Carbopack B resins and analyzed by thermal desorption, followed by gas chromatography coupled to a mass selective detector (GC/MSD). Time resolved data provided information on ambient levels, temporal and spatial variations and sources of VOCs in Ankara. Toluene is the most abundant compound at all sites with and average concentration of 13.1 ?g m(-3). The mean concentrations of benzene are 12.6, 5.2, and 2.4 ?g m(-3) during winter at roadside, residential and background stations, respectively. Diurnal variation in the data together with toluene to benzene concentration ratio (T:B) that is close to 2.0 indicated the influence of traffic related emissions at residential and roadside stations during winter season. Higher T:B ratio observed at residential and background stations during summer period and correlation analysis indicated additional VOC sources. Temporal variations and low m,p-xylene to ethylbenzene ratio (mpX:E) indicated that transported air mass is the major VOC source influencing VOC concentrations measured at the background station.

  2. Afforestation areas defined by GIS in Gölbaşi specially protected area Ankara/Turkey.

    PubMed

    Dilek, E Figen; Sahin, Sükran; Yilmazer, Ilyas

    2008-09-01

    This paper concentrates on determining the areas for afforestation and the development of conservation strategies and actions in the case where there is high demand for the conservation of a particular land area. The analysis of hydrological landscape structure and of erodibility was prerequisite in the methodological design considering the site-specific natural landscape characteristics of the study area. The Gölbaşi Specially Protected Area (SPA) being the case area has many local environmental disturbances, especially with respect to its hydrological system, and the area is beset by increasing demands for its use by the burgeoning human population. It is obviously clear that the present intensive demand for recreational use will be forecasted further increase in the future. The count of rural residences is estimated to increase by 50% over the next decade. This intensive demand shall further strain the carrying capacity of the ecological milieu, which has already suffered to a significant degree because of the present urban and rural activities. The Gölbaşi district is located only 20 km from the city center of Ankara, and its surroundings were legally designated to be a Specially Protected Area primarily for the existence of lacustral and fluvial systems where two interconnected lakes exist: Mogan and Eğmir Lakes. Essentially, the continuity of the lacustral and fluvial system of Lakes Mogan and Eğmir depends on the preservation and improvement of the water sources. However, interconnected surface water bodies of these lakes are actually quite contaminated, and a decline in the water flow from Mogan to Eğmir has been observed. For the elaboration of the present method, required conventional maps (at 1/25,000 scale) of topography (for slope analysis) and geology (for erodibility and permeability analysis) were transferred to computer media using AutoCAD R.14 software. The rectification of the transferred data was done using ERDAS Imagine 8.3. All data

  3. Broad Protection against Avian Influenza Virus by Using a Modified Vaccinia Ankara Virus Expressing a Mosaic Hemagglutinin Gene

    PubMed Central

    Kamlangdee, Attapon; Kingstad-Bakke, Brock; Anderson, Tavis K.; Goldberg, Tony L.

    2014-01-01

    ABSTRACT A critical failure in our preparedness for an influenza pandemic is the lack of a universal vaccine. Influenza virus strains diverge by 1 to 2% per year, and commercially available vaccines often do not elicit protection from one year to the next, necessitating frequent formulation changes. This represents a major challenge to the development of a cross-protective vaccine that can protect against circulating viral antigenic diversity. We have constructed a recombinant modified vaccinia virus Ankara (MVA) that expresses an H5N1 mosaic hemagglutinin (H5M) (MVA-H5M). This mosaic was generated in silico using 2,145 field-sourced H5N1 isolates. A single dose of MVA-H5M provided 100% protection in mice against clade 0, 1, and 2 avian influenza viruses and also protected against seasonal H1N1 virus (A/Puerto Rico/8/34). It also provided short-term (10 days) and long-term (6 months) protection postvaccination. Both neutralizing antibodies and antigen-specific CD4+ and CD8+ T cells were still detected at 5 months postvaccination, suggesting that MVA-H5M provides long-lasting immunity. IMPORTANCE Influenza viruses infect a billion people and cause up to 500,000 deaths every year. A major problem in combating influenza is the lack of broadly effective vaccines. One solution from the field of human immunodeficiency virus vaccinology involves a novel in silico mosaic approach that has been shown to provide broad and robust protection against highly variable viruses. Unlike a consensus algorithm which picks the most frequent residue at each position, the mosaic method chooses the most frequent T-cell epitopes and combines them to form a synthetic antigen. These studies demonstrated that a mosaic influenza virus H5 hemagglutinin expressed by a viral vector can elicit full protection against diverse H5N1 challenges as well as induce broader immunity than a wild-type hemagglutinin. PMID:25210173

  4. Broad protection against avian influenza virus by using a modified vaccinia Ankara virus expressing a mosaic hemagglutinin gene.

    PubMed

    Kamlangdee, Attapon; Kingstad-Bakke, Brock; Anderson, Tavis K; Goldberg, Tony L; Osorio, Jorge E

    2014-11-01

    A critical failure in our preparedness for an influenza pandemic is the lack of a universal vaccine. Influenza virus strains diverge by 1 to 2% per year, and commercially available vaccines often do not elicit protection from one year to the next, necessitating frequent formulation changes. This represents a major challenge to the development of a cross-protective vaccine that can protect against circulating viral antigenic diversity. We have constructed a recombinant modified vaccinia virus Ankara (MVA) that expresses an H5N1 mosaic hemagglutinin (H5M) (MVA-H5M). This mosaic was generated in silico using 2,145 field-sourced H5N1 isolates. A single dose of MVA-H5M provided 100% protection in mice against clade 0, 1, and 2 avian influenza viruses and also protected against seasonal H1N1 virus (A/Puerto Rico/8/34). It also provided short-term (10 days) and long-term (6 months) protection postvaccination. Both neutralizing antibodies and antigen-specific CD4(+) and CD8(+) T cells were still detected at 5 months postvaccination, suggesting that MVA-H5M provides long-lasting immunity. Influenza viruses infect a billion people and cause up to 500,000 deaths every year. A major problem in combating influenza is the lack of broadly effective vaccines. One solution from the field of human immunodeficiency virus vaccinology involves a novel in silico mosaic approach that has been shown to provide broad and robust protection against highly variable viruses. Unlike a consensus algorithm which picks the most frequent residue at each position, the mosaic method chooses the most frequent T-cell epitopes and combines them to form a synthetic antigen. These studies demonstrated that a mosaic influenza virus H5 hemagglutinin expressed by a viral vector can elicit full protection against diverse H5N1 challenges as well as induce broader immunity than a wild-type hemagglutinin. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  5. Coastline change assessment on water reservoirs located in the Konya Basin Area, Turkey, using multitemporal landsat imagery.

    PubMed

    Durduran, S Savas

    2010-05-01

    This paper focuses mainly on the coastline change assessment on water reservoirs located in the Konya Basin Area, Turkey. The Konya Closed Basin exists at the Central Anatolia Region and covers a region of 50,000 km(2) area corresponding to the 7% cumulative area of Turkey in which three million people live, 45% in rural areas and 55% in urban areas. The basin is surrounded with the city centers of Konya, Aksaray, Karaman, Isparta, Niğde, Ankara, Nevşehir, and Antalya cities. In this study, these changes were examined using Landsat TM and ETM+ 1987-2006 and 1990-2000. In the image processing step, image and vectorization of the satellite images were carried out to monitor coastline changes over the lakes located in the Konya Closed Basin Area. At the end of the study, significant coastline movements were detected for a 19-year period due to drought effects, agricultural watering, and planning mistakes experienced in the basin.

  6. Recombinant modified vaccinia virus Ankara generating excess early double-stranded RNA transiently activates protein kinase R and triggers enhanced innate immune responses.

    PubMed

    Wolferstätter, Michael; Schweneker, Marc; Späth, Michaela; Lukassen, Susanne; Klingenberg, Marieken; Brinkmann, Kay; Wielert, Ursula; Lauterbach, Henning; Hochrein, Hubertus; Chaplin, Paul; Suter, Mark; Hausmann, Jürgen

    2014-12-01

    Double-stranded RNA (dsRNA) is an important molecular pattern associated with viral infection and is detected by various extra- and intracellular recognition molecules. Poxviruses have evolved to avoid producing dsRNA early in infection but generate significant amounts of dsRNA late in infection due to convergent transcription of late genes. Protein kinase R (PKR) is activated by dsRNA and triggers major cellular defenses against viral infection, including protein synthesis shutdown, apoptosis, and type I interferon (IFN-I) production. The poxviral E3 protein binds and sequesters viral dsRNA and is a major antagonist of the PKR pathway. We found that the highly replication-restricted modified vaccinia virus Ankara (MVA) engineered to produce excess amounts of dsRNA early in infection showed enhanced induction of IFN-β in murine and human cells in the presence of an intact E3L gene. IFN-β induction required a minimum overlap length of 300 bp between early complementary transcripts and was strongly PKR dependent. Excess early dsRNA produced by MVA activated PKR early but transiently in murine cells and induced enhanced systemic levels of IFN-α, IFN-γ, and other cytokines and chemokines in mice in a largely PKR-dependent manner. Replication-competent chorioallantois vaccinia virus Ankara (CVA) generating excess early dsRNA also enhanced IFN-I production and was apathogenic in mice even at very high doses but showed no in vitro host range defect. Thus, genetically adjuvanting MVA and CVA to generate excess early dsRNA is an effective method to enhance innate immune stimulation by orthopoxvirus vectors and to attenuate replicating vaccinia virus in vivo. Efficient cellular sensing of pathogen-specific components, including double-stranded RNA (dsRNA), is an important prerequisite of an effective antiviral immune response. The prototype poxvirus vaccinia virus (VACV) and its derivative modified vaccinia virus Ankara (MVA) produce dsRNA as a by-product of viral

  7. Lithospheric convective removal related post-collisional middle Eocene magmatism along the Izmir-Ankara-Erzincan suture zone (NE Turkey).

    NASA Astrophysics Data System (ADS)

    Göçmengil, Gönenç; Karacık, Zekiye; Genç, Ş. Can

    2017-04-01

    Obliteration of the Mesozoic Neo-Tethyan Ocean and succeeding collision of the micro plates along the northern part of Turkey lead the development of the İzmir-Ankara-Erzincan suture zone (IAESZ). The suturing and collision stages terminate with the amalgamation of the three different crustal blocks (Pontides, Central Anatolian Crystalline Complex and Anatolide-Tauride Block) in the Paleocene-Early Eocene period. After the collisional stage; a new phase of extension and magmatism concomitantly developed at the both sides and as well as along the IAESZ during the Middle Eocene period. However, the origin, mechanism and driving force of the post-collisional magmatism is still enigmatic. To understand and better constrain the syn-to post collisional evolutionary stages, we have carried out volcano-stratigraphy and geochemistry based study on the middle Eocene magmatic associations along a transect ( 100 km) from Pontides to the Central Anatolian Crystalline Complex (CACC) at the NE part of the Turkey. Middle Eocene magmatic activity in the region has been represented by calc-alkaline, alkaline, shoshonitic volcanic and granitic rocks together with scarce gabbroic intrusions. We particularly focused on middle Eocene volcano-sedimentary successions (MEVSS) to constrain the tectono-magmatic evolution of the abovementioned transect. The volcano-sedimentary succsessions are coevally developed and cover the crustal blocks (Pontides and CACC) and the IAESZ with a region wide unconformity. We have differentiated three lava series (V1-V2-V3) and their sub-groups (V1a-V1b; V2a-V2b) in MEVSS. Generally, all lava series have middle-K to shoshonitic composition with distinct subduction characteristics. V1 series is marked by presence of hydrous phenocrysts such as amphibole+biotite. V1a sub-group constitute the first volcanic product and characterized by the high Mg# (42-69); alkaline basaltic andesite, and hawaiites. V1b sub-group is represented by calc-alkaline, low Mg# (24

  8. A genetic model for Na-carbonate mineral precipitation in the Miocene Beypazarı trona deposit, Ankara province, Turkey

    NASA Astrophysics Data System (ADS)

    García-Veigas, Javier; Gündoğan, İbrahim; Helvacı, Cahit; Prats, Eva

    2013-08-01

    The Miocene Beypazarı trona deposit in Central Anatolia (Turkey), with estimated reserves of 250 million of tons of soda ash (sodium carbonate), is the second largest Na-carbonate deposit in the world. Petrographic observations of sodium-carbonate evaporites from basin-center cores show that the evaporites and associated minerals underwent significant early diagenetic mineral transformations in the Beypazarı Basin. Trona, pirssonite and nahcolite are the major evaporite minerals, with subordinate bradleyite, shortite and thenardite. Pirssonite occurs in organic-rich muds (oil shales). Pirssonite is not a primary mineral but rather appears to have formed diagenetically from displacive gaylussite. Trona precipitated subaqueously (in lake waters) and as interstitial phase in playa muds. Nahcolite is a later diagenetic mineral replacing both trona and pirssonite beds. Evaporite minerals are closely related to pyrite in oil shales and are also associated with diagenetic silicates (Mg-rich smectites, zeolites, K-feldspar, searlesite, and idiomorphic quartz) formed by reaction of alkaline brines with pyroclastic deposits. The proposed sedimentary model involves an alkaline lake in which water depth fluctuated from deep, perennial, meromictic (stratified) stages to shallow, ephemeral, playa lake stages. Lake margin clastic deposits are absent in the center of the basin wherein Na-carbonate minerals were formed, suggesting the prevalence of a groundwater regime during drawdown events.

  9. Vaccine strategies against Babesia bovis based on prime-boost immunizations in mice with modified vaccinia Ankara vector and recombinant proteins.

    PubMed

    Jaramillo Ortiz, José Manuel; Del Médico Zajac, María Paula; Zanetti, Flavia Adriana; Molinari, María Paula; Gravisaco, María José; Calamante, Gabriela; Wilkowsky, Silvina Elizabeth

    2014-08-06

    In this study, a recombinant modified vaccinia virus Ankara vector expressing a chimeric multi-antigen was obtained and evaluated as a candidate vaccine in homologous and heterologous prime-boost immunizations with a recombinant protein cocktail. The chimeric multi-antigen comprises immunodominant B and T cell regions of three Babesia bovis proteins. Humoral and cellular immune responses were evaluated in mice to compare the immunogenicity induced by different immunization schemes. The best vaccination scheme was achieved with a prime of protein cocktail and a boost with the recombinant virus. This scheme induced high level of specific IgG antibodies and secreted IFN and a high degree of activation of IFNγ(+) CD4(+) and CD8(+) specific T cells. This is the first report in which a novel vaccine candidate was constructed based on a rationally designed multi-antigen and evaluated in a prime-boost regime, optimizing the immune response necessary for protection against bovine babesiosis.

  10. Protective effects of a Modified Vaccinia Ankara-based vaccine candidate against Crimean-Congo Haemorrhagic Fever virus require both cellular and humoral responses.

    PubMed

    Dowall, Stuart D; Graham, Victoria A; Rayner, Emma; Hunter, Laura; Watson, Robert; Taylor, Irene; Rule, Antony; Carroll, Miles W; Hewson, Roger

    2016-01-01

    Crimean-Congo Haemorrhagic Fever (CCHF) is a severe tick-borne disease, endemic in many countries in Africa, the Middle East, Eastern Europe and Asia. There is no approved vaccine currently available against CCHF. The most promising candidate, which has previously been shown to confer protection in the small animal model, is a modified Vaccinia Ankara virus vector expressing the CCHF viral glycoprotein (MVA-GP). It has been shown that MVA-GP induces both humoral and cellular immunogenicity. In the present study, sera and T-lymphocytes were passively and adoptively transferred into recipient mice prior to challenge with CCHF virus. Results demonstrated that mediators from both arms of the immune system were required to demonstrate protective effects against lethal challenge.

  11. Improvement of BCG protective efficacy with a novel chimpanzee adenovirus and a modified vaccinia Ankara virus both expressing Ag85A.

    PubMed

    Stylianou, E; Griffiths, K L; Poyntz, H C; Harrington-Kandt, R; Dicks, M D; Stockdale, L; Betts, G; McShane, H

    2015-11-27

    A replication-deficient chimpanzee adenovirus expressing Ag85A (ChAdOx1.85A) was assessed, both alone and in combination with modified vaccinia Ankara also expressing Ag85A (MVA85A), for its immunogenicity and protective efficacy against a Mycobacterium tuberculosis (M.tb) challenge in mice. Naïve and BCG-primed mice were vaccinated or boosted with ChAdOx1.85A and MVA85A in different combinations. Although intranasally administered ChAdOx1.85A induced strong immune responses in the lungs, it failed to consistently protect against aerosol M.tb challenge. In contrast, ChAdOx1.85A followed by MVA85A administered either mucosally or systemically, induced strong immune responses and was able to improve the protective efficacy of BCG. This vaccination regime has consistently shown superior protection over BCG alone and should be evaluated further.

  12. Protective effects of a Modified Vaccinia Ankara-based vaccine candidate against Crimean-Congo Haemorrhagic Fever virus require both cellular and humoral responses

    PubMed Central

    Dowall, Stuart D.; Graham, Victoria A.; Rayner, Emma; Hunter, Laura; Watson, Robert; Taylor, Irene; Rule, Antony; Carroll, Miles W.; Hewson, Roger

    2016-01-01

    Crimean-Congo Haemorrhagic Fever (CCHF) is a severe tick-borne disease, endemic in many countries in Africa, the Middle East, Eastern Europe and Asia. There is no approved vaccine currently available against CCHF. The most promising candidate, which has previously been shown to confer protection in the small animal model, is a modified Vaccinia Ankara virus vector expressing the CCHF viral glycoprotein (MVA-GP). It has been shown that MVA-GP induces both humoral and cellular immunogenicity. In the present study, sera and T-lymphocytes were passively and adoptively transferred into recipient mice prior to challenge with CCHF virus. Results demonstrated that mediators from both arms of the immune system were required to demonstrate protective effects against lethal challenge. PMID:27272940

  13. Safety, Immunogenicity and Efficacy of Modified Vaccinia Ankara (MVA) Against Dryvax® Challenge in Vaccinia-Naïve and Vaccinia-Immune Individuals

    PubMed Central

    Parrino, Janie; McCurdy, Lewis H.; Larkin, Brenda D.; Gordon, Ingelise J.; Rucker, Steven E.; Enama, Mary E.; Koup, Richard A.; Roederer, Mario; Bailer, Robert T.; Moodie, Zoe; Gu, Lin; Yan, Lihan; Graham, Barney S.

    2007-01-01

    Modified vaccinia Ankara (MVA) was evaluated as an alternative to Dryvax® in vaccinia-naïve and immune adult volunteers. Subjects received intramuscular MVA or placebo followed by Dryvax® challenge at 3 months. Two or more doses of MVA prior to Dryvax® reduced severity of lesion formation, decreased magnitude and duration of viral shedding, and augmented post-Dryvax® vaccinia-specific CD8+ T cell responses and extracellular enveloped virus protein-specific antibody responses. MVA vaccination is safe and immunogenic and improves the safety and immunogenicity of subsequent Dryvax® vaccination supporting the potential for using MVA as a vaccine in the general population to improve immunity to orthopoxviruses. PMID:17126963

  14. [Distribution of Enterobius vermicularis among the schoolchildren of two primary schools with different social-economic status in the Ankara province].

    PubMed

    Hazir, Canan; Gündeşli, Hülya; Ozkirim, Asli; Keskin, Nevin

    2009-01-01

    In this study, 207 cellophane-tape specimens were taken from children at two different primary schools in Ankara province. Twenty two out of 207 samples were positive for Enterobius vermicularis (10.6%). A questionnaire including the major factors affecting the distribution of E. vermicularis such as the students' ages, genders and socio-economic status was made. No relationship was found between children's gender and E. vermicularis infection, whereas a higher infection rate was seen in the low-income families. When the 6-9 age group was taken into consideration, the incidence of E. vermicularis was higher for the 8-9 age group than for the 6-7 age group. Abdominal pain was the most common clinical symptom among the children.

  15. A Modified Vaccinia Ankara Virus (MVA) Vaccine Expressing African Horse Sickness Virus (AHSV) VP2 Protects Against AHSV Challenge in an IFNAR −/− Mouse Model

    PubMed Central

    Castillo-Olivares, Javier; Calvo-Pinilla, Eva; Casanova, Isabel; Bachanek-Bankowska, Katarzyna; Chiam, Rachael; Maan, Sushila; Nieto, Jose Maria; Ortego, Javier; Mertens, Peter Paul Clement

    2011-01-01

    African horse sickness (AHS) is a lethal viral disease of equids, which is transmitted by Culicoides midges that become infected after biting a viraemic host. The use of live attenuated vaccines has been vital for the control of this disease in endemic regions. However, there are safety concerns over their use in non-endemic countries. Research efforts over the last two decades have therefore focused on developing alternative vaccines based on recombinant baculovirus or live viral vectors expressing structural components of the AHS virion. However, ethical and financial considerations, relating to the use of infected horses in high biosecurity installations, have made progress very slow. We have therefore assessed the potential of an experimental mouse-model for AHSV infection for vaccine and immunology research. We initially characterised AHSV infection in this model, then tested the protective efficacy of a recombinant vaccine based on modified vaccinia Ankara expressing AHS-4 VP2 (MVA-VP2). PMID:21298069

  16. Improvement of BCG protective efficacy with a novel chimpanzee adenovirus and a modified vaccinia Ankara virus both expressing Ag85A

    PubMed Central

    Stylianou, E.; Griffiths, K.L.; Poyntz, H.C.; Harrington-Kandt, R.; Dicks, M.D.; Stockdale, L.; Betts, G.; McShane, H.

    2015-01-01

    A replication-deficient chimpanzee adenovirus expressing Ag85A (ChAdOx1.85A) was assessed, both alone and in combination with modified vaccinia Ankara also expressing Ag85A (MVA85A), for its immunogenicity and protective efficacy against a Mycobacterium tuberculosis (M.tb) challenge in mice. Naïve and BCG-primed mice were vaccinated or boosted with ChAdOx1.85A and MVA85A in different combinations. Although intranasally administered ChAdOx1.85A induced strong immune responses in the lungs, it failed to consistently protect against aerosol M.tb challenge. In contrast, ChAdOx1.85A followed by MVA85A administered either mucosally or systemically, induced strong immune responses and was able to improve the protective efficacy of BCG. This vaccination regime has consistently shown superior protection over BCG alone and should be evaluated further. PMID:26478198

  17. Tectono-stratigraphy of the Orhaniye Basin, Turkey: Implications for collision chronology and Paleogene biogeography of central Anatolia

    NASA Astrophysics Data System (ADS)

    Licht, A.; Coster, P.; Ocakoğlu, F.; Campbell, C.; Métais, G.; Mulch, A.; Taylor, M.; Kappelman, John; Beard, K. Christopher

    2017-08-01

    Located along the İzmir-Ankara-Erzincan Suture (IAES), the Maastrichtian - Paleogene Orhaniye Basin has yielded a highly enigmatic -yet poorly dated- Paleogene mammal fauna, the endemic character of which has suggested high faunal provincialism associated with paleogeographic isolation of the Anatolian landmass during the early Cenozoic. Despite its biogeographic significance, the tectono-stratigraphic history of the Orhaniye Basin has been poorly documented. Here, we combine sedimentary, magnetostratigraphic, and geochronological data to infer the chronology and depositional history of the Orhaniye Basin. We then assess how our new data and interpretations for the Orhaniye Basin impact (1) the timing and mechanisms of seaway closure along the IAES and (2) the biogeographic evolution of Anatolia. Our results show that the Orhaniye Basin initially developed as a forearc basin during the Maastrichtian, before shifting to a retroarc foreland basin setting sometime between the early Paleocene and 44 Ma. This chronology supports a two-step scenario for the assemblage of the central Anatolian landmass, with incipient collision during the Paleocene - Early Eocene and final seaway retreat along the IAES during the earliest Late Eocene after the last marine incursion into the foreland basin. Our dating for the Orhaniye mammal fauna (44-43 Ma) indicates the persistence of faunal endemism in northern Anatolia until at least the late Lutetian despite the advanced stage of IAES closure. The tectonic evolution of dispersal corridors linking northern Anatolia with adjacent parts of Eurasia was not directly associated with IAES closure and consecutive uplifts, but rather with the build-up of continental bridges on the margins of Anatolia, in the Alpine and Tibetan-Himalayan orogens.

  18. Further characterization of a new recombinant group of Plum pox virus isolates, PPV-T, found in orchards in the Ankara province of Turkey.

    PubMed

    Serçe, Ciğdem Ulubaş; Candresse, Thierry; Svanella-Dumas, Laurence; Krizbai, Laszlo; Gazel, Mona; Cağlayan, Kadriye

    2009-06-01

    Sixteen Plum pox virus (PPV) isolates collected in the Ankara region of Turkey were analyzed using available serological and molecular typing assays. Surprisingly, despite the fact that all isolates except one, which was a mix infection, were typed as belonging to the PPV-M strain in four independent molecular assays, nine of them (60%) reacted with both PPV-M specific and PPV-D specific monoclonal antibodies. Partial 5' and 3' genomic sequence analysis on four isolates demonstrated that irrespective of their reactivity towards the PPV-D specific monoclonal antibody, they were all closely related to a recombinant PPV isolate from Turkey, Ab-Tk. All three isolates for which the relevant genomic sequence was obtained showed the same recombination event as Ab-Tk in the HC-Pro gene, around position 1566 of the genome. Complete genomic sequencing of Ab-Tk did not provide evidence for additional recombination events in its evolutionary history. Taken together, these results indicate that a group of closely related PPV isolates characterized by a unique recombination in the HC-Pro gene is prevalent under field conditions in the Ankara region of Turkey. Similar to the situation with the PPV-Rec strain, we propose that these isolates represent a novel strain of PPV, for which the name PPV-T (Turkey) is proposed. Given that PPV-T isolates cannot be identified by currently available typing techniques, it is possible that their presence has been overlooked in other situations. Further efforts should allow a precise description of their prevalence and of their geographical distribution in Turkey and, possibly, in other countries.

  19. Short communication: investigation of aflatoxin M1 levels in infant follow-on milks and infant formulas sold in the markets of Ankara, Turkey.

    PubMed

    Er, B; Demirhan, B; Yentür, G

    2014-01-01

    Aflatoxins are fungal toxins known to be carcinogenic and are classified as food contaminants. This study was performed to investigate aflatoxin (AF) M1 levels in baby foods sold in Ankara (Turkey) and to evaluate the obtained results according to the Turkish Food Codex (TFC). For this purpose, a total of 84 baby food samples (50 follow-on milks and 34 infant formulas) were obtained from different markets in Ankara and the presence of AFM1 in the samples was analyzed by ELISA. In 32 (38.1%) of 84 infant food samples, the presence of AFM1 was detected in concentrations ranging between 0.0055 and 0.0201 µg/kg. The mean level (± standard error) of AFM1 was found to be 0.0089 ± 0.0006 µg/kg in positive infant follow-on milks. Aflatoxin M1 was detected in only 1 infant formula sample (2.94%) at a concentration of 0.0061 µg/kg. The extrapolated levels of AFB1 contamination in feedstuffs were calculated based on levels of AFM1 in baby food samples. The data estimating AFB1 contamination in dairy cattle feedstuff indicate that contamination may range from 0.3410 to 1.2580 µg/kg, with the mean level (± standard error) being 0.5499 ± 0.0385 µg/kg, which is lower than the level set by the TFC and European Union regulations (5 µg/kg). According to the obtained results, the levels of AFM1 in analyzed samples were within the allowed limit (0.025 µg/kg) set in the TFC. Low levels of AFM1 in infant follow-on milks and infant formula samples obtained during the study do not pose a health risk to infants.

  20. Fatal ethyl and methyl alcohol-related poisoning in Ankara: A retrospective analysis of 10,720 cases between 2001 and 2011.

    PubMed

    Celik, Safa; Karapirli, Mustafa; Kandemir, Eyup; Ucar, Fatma; Kantarcı, Muhammed Nabi; Gurler, Mukaddes; Akyol, Omer

    2013-04-01

    Methyl and ethyl alcohol poisoning are still responsible for high morbidity and mortality rates. The purpose of this retrospective study was to examine ethyl and methyl alcohol poisoning related deaths in Ankara and surrounding cities between 2001 and 2011 and compare them with previous studied conducted in Turkey and other countries. For this purpose, 10,720 medico-legal autopsy cases performed in Ankara Branch of the Council of Forensic Medicine were reviewed in terms of alcohol poisonings. The deaths due to methanol and ethanol poisoning were 74 (0.69% of all medico-legal autopsies performed) and the distribution among them was 35 (47.3%) for methanol poisoning and 39 (52.7%) for ethanol poisoning. Overwhelming majority of the cases were male (n = 67, 90.5%). The mean age of the victims was 44.9 ± 10.9 years and ranging from 21 to 92 years. The age group of 35-49 years was the mostly affected. Most of the cases were seen in 2004 (n = 12, 16.2%). The levels of postmortem blood alcohol levels were available for all cases and the mean alcohol levels were 322.8 ± 155.5 mg/dL ranging from 74 to 602 mg/dL for methanol and 396.8 ± 87.1 mg/dL and ranging from 136 to 608 mg/dL for ethanol. Early diagnosis is essential for successful treatment in methanol and ethanol poisoning. Besides increased awareness, more sensitive/specific diagnostic tools, and the prompt approach to the poisoned individual should be implemented in the hospitals.

  1. BASINS Tutorials and Training

    EPA Pesticide Factsheets

    A series of lectures and exercises on how to use BASINS for water quality modeling and watershed assessment. The lectures follow sequentially. Companion exercises are provided for users to practice different BASINS water quality modeling techniques.

  2. BASINS Technical Notes

    EPA Pesticide Factsheets

    EPA has developed several technical notes that provide in depth information on a specific function in BASINS. Technical notes can be used to answer questions users may have, or to provide additional information on the application of features in BASINS.

  3. Los Angeles Basin

    NASA Image and Video Library

    2009-06-29

    The Los Angeles Basin is bordered on the north by the San Gabriel Mountains. Other smaller basins are separated by smaller mountain ranges, like the Verdugo Hills, and the Santa Monica Mountains in this image from NASA Terra spacecraft.

  4. [Investigation of norovirus infection incidence among 0-5 years old children with acute gastroenteritis admitted to two different hospitals in ankara, Turkey].

    PubMed

    Altay, Aylin; Bozdayı, Gülendam; Meral, Melda; Dallar Bilge, Yıldız; Dalgıç, Buket; Ozkan, Seçil; Ahmed, Kamruddin

    2013-01-01

    Norovirus causes severe gastroenteritis requiring hospitalization especially in children less than five years of age both in developed and developing countries. Therefore, we aimed to investigate the incidence of norovirus (NoV) in 0-5 years old children with acute gastroenteritis in two large hospitals in Ankara, Turkey. Stool samples were obtained from 1000 (413 female, 587 male) children between 0-5 years old with acute gastroenteritis who attended to the Department of Paediatrics, Ministry of Health Ankara Training and Education Hospital and affiliated hospital of Gazi University Faculty of Medicine between October 2004 and June 2011. Antigens of norovirus GI and GII genogroups in the stool specimens were detected by ELISA (RIDASCREEN® Norovirus (C1401) 3rd Generation, R-Biopharm, Germany). Norovirus GI and GII antigens were determined in a total of 141 (14.1%) samples, of them 62 (15%) were female and 79 (13.5%) were male, yielding no statistically significant difference (p> 0.05). The highest NoV positivity was detected in children between 12-23 months (17.1%), however there was no statistically significant difference between ELISA positivity and age (p> 0.05). NoV detection rate was highest in 2007 (18.4%) and in 2009 (18%), and the difference regarding ELISA positivity among the study years was not statistically significant (p> 0.05). The prevalences of norovirus infection in spring, summer, autumn and winter were 13.8%, 17.7%, 14.7% and 11.2%, respectively. Therefore no seasonal variation was found in the incidence of norovirus infection. However when the monthly prevalence was analyzed, a statistically significant difference was found (p< 0.05) between the rate of norovirus infection in july (24.2%) and december (4.1%). When evaluating the clinical symptoms, all of 141 patients (100%) had diarrhoea, while 72 (51.1%) had vomiting. Stool samples were also evaluated for the presence of parasitic and bacterial agents. Coinfection rate with parasites was

  5. Safety and Immunogenicity of Modified Vaccinia Ankara-Bavarian Nordic Smallpox Vaccine in Vaccinia-Naive and Experienced Human Immunodeficiency Virus-Infected Individuals: An Open-Label, Controlled Clinical Phase II Trial.

    PubMed

    Overton, Edgar Turner; Stapleton, Jack; Frank, Ian; Hassler, Shawn; Goepfert, Paul A; Barker, David; Wagner, Eva; von Krempelhuber, Alfred; Virgin, Garth; Meyer, Thomas Peter; Müller, Jutta; Bädeker, Nicole; Grünert, Robert; Young, Philip; Rösch, Siegfried; Maclennan, Jane; Arndtz-Wiedemann, Nathaly; Chaplin, Paul

    2015-04-01

    Background.  First- and second-generation smallpox vaccines are contraindicated in individuals infected with human immunodeficiency virus (HIV). A new smallpox vaccine is needed to protect this population in the context of biodefense preparedness. The focus of this study was to compare the safety and immunogenicity of a replication-deficient, highly attenuated smallpox vaccine modified vaccinia Ankara (MVA) in HIV-infected and healthy subjects. Methods.  An open-label, controlled Phase II trial was conducted at 36 centers in the United States and Puerto Rico for HIV-infected and healthy subjects. Subjects received 2 doses of MVA administered 4 weeks apart. Safety was evaluated by assessment of adverse events, focused physical exams, electrocardiogram recordings, and safety laboratories. Immune responses were assessed using enzyme-linked immunosorbent assay (ELISA) and a plaque reduction neutralization test (PRNT). Results.  Five hundred seventy-nine subjects were vaccinated at least once and had data available for analysis. Rates of ELISA seropositivity were comparably high in vaccinia-naive healthy and HIV-infected subjects, whereas PRNT seropositivity rates were higher in healthy compared with HIV-infected subjects. Modified vaccinia Ankara was safe and well tolerated with no adverse impact on viral load or CD4 counts. There were no cases of myo-/pericarditis reported. Conclusions.  Modified vaccinia Ankara was safe and immunogenic in subjects infected with HIV and represents a promising smallpox vaccine candidate for use in immunocompromised populations.

  6. Safety and Immunogenicity of Modified Vaccinia Ankara-Bavarian Nordic Smallpox Vaccine in Vaccinia-Naive and Experienced Human Immunodeficiency Virus-Infected Individuals: An Open-Label, Controlled Clinical Phase II Trial

    PubMed Central

    Overton, Edgar Turner; Stapleton, Jack; Frank, Ian; Hassler, Shawn; Goepfert, Paul A.; Barker, David; Wagner, Eva; von Krempelhuber, Alfred; Virgin, Garth; Meyer, Thomas Peter; Müller, Jutta; Bädeker, Nicole; Grünert, Robert; Young, Philip; Rösch, Siegfried; Maclennan, Jane; Arndtz-Wiedemann, Nathaly; Chaplin, Paul

    2015-01-01

    Background. First- and second-generation smallpox vaccines are contraindicated in individuals infected with human immunodeficiency virus (HIV). A new smallpox vaccine is needed to protect this population in the context of biodefense preparedness. The focus of this study was to compare the safety and immunogenicity of a replication-deficient, highly attenuated smallpox vaccine modified vaccinia Ankara (MVA) in HIV-infected and healthy subjects. Methods. An open-label, controlled Phase II trial was conducted at 36 centers in the United States and Puerto Rico for HIV-infected and healthy subjects. Subjects received 2 doses of MVA administered 4 weeks apart. Safety was evaluated by assessment of adverse events, focused physical exams, electrocardiogram recordings, and safety laboratories. Immune responses were assessed using enzyme-linked immunosorbent assay (ELISA) and a plaque reduction neutralization test (PRNT). Results. Five hundred seventy-nine subjects were vaccinated at least once and had data available for analysis. Rates of ELISA seropositivity were comparably high in vaccinia-naive healthy and HIV-infected subjects, whereas PRNT seropositivity rates were higher in healthy compared with HIV-infected subjects. Modified vaccinia Ankara was safe and well tolerated with no adverse impact on viral load or CD4 counts. There were no cases of myo-/pericarditis reported. Conclusions. Modified vaccinia Ankara was safe and immunogenic in subjects infected with HIV and represents a promising smallpox vaccine candidate for use in immunocompromised populations. PMID:26380340

  7. [Characterization of Shigella strains isolated in ankara, Turkey by antimicrobial resistance models, plasmid profile analysis and pulsed-field gel electrophoresis].

    PubMed

    Saran, Begüm; Erdem, Birsel; Tekeli, Fazıl Alper; Sahin, Fikret; Aysev, Ahmet Derya

    2013-01-01

    Shigella is one of the most important causative agents of diarrhea especially in childhood. Since man is the main reservoir of Shigella and human to human transmission is possible, Shigella can easily spread in public and cause outbreaks. In this study, a total of 60 Shigella strains isolated in Ankara, Turkey by years 2001, 2008 and 2009 were investigated by their antimicrobial susceptibility profiles, plasmid profile analysis (PPA) and pulsed-field gel electrophoresis (PFGE). For epidemiological investigation, the results obtained by antibiotic resistance typing (ART) which was the phenotyping method, was compared to the results of the genotyping methods which were PPA and PFGE. Of the isolates 49 (81.6%) were S.sonnei, 10 (16.6%) were S.flexneri and one was (1.6%) S.dysenteriae. Antimicrobial susceptibilities were evaluated by disc diffusion method and the highest resistance rates were found against trimethoprim/sulfamethoxazole (91.6%), followed by tetracycline (68.3%) and ampicillin (26.6%). Resistance against ampicillin, chloramphenicol and amoxycillin/clavulanic acid were found higher in S.flexneri isolates than S.sonnei (p< 0.001). All isolates were found to be susceptible to ciprofloxacin, gentamicin and ceftazidime. S.sonnei demonstrated 12 and S.flexneri demonstrated 4 antibiotic resistance models. All isolates were carrying plasmids with varying sizes and varying numbers between 1 to 7. S.sonnei isolates demonstrated 27 and S.flexneri isolates demonstrated 8 plasmid profiles. S.sonnei isolates were clustered in 4 patterns and S.flexneri were clustered in 5 patterns by PFGE. This method demonstrated obvious clonal similarity among S.sonnei strains isolated in Ankara and discriminative power (DP) was calculated as 0.26. PPA and ART demonstrated higher DP among S.sonnei strains (0.97 and 0.75, respectively). In this study gain or loss of instable genetic mobile elements were thought to be responsible for higher discriminative powers of PPA and ART methods

  8. Stratigraphy and Folding in the Cenozoic Cover of a Fold-Thrust Belt in the Nallıhan Region (Ankara, Central Turkey)

    NASA Astrophysics Data System (ADS)

    Karaaǧaç, Serdal; Koral, Hayrettin

    2017-04-01

    This study investigates stratigraphy and structural features in the Cenozoic sedimentary sequence of the fold-thrust belt of the Nallıhan-Ankara region, located to the north of the İzmir-Ankara-Erzincan Suture Zone. Permian-Triassic age marble intercalated with schist-phyllites, the upper Jurassic-lower Cretaceous age limestone and the upper Cretaceous age sandstone-shale alternation compose the basement in the study area. These rocks are unconformably overlain by the Cenozoic age terrestrial sedimentary and volcanic units. The Cenozoic stratigraphy begins with the Paleocene-Eocene age coal-bearing, at times, volcanic intercalated conglomerate-sandstone-mudstone alternation of alluvial-fluvial origins (Aksaklar Formation) and the tuff intercalated with lacustrine limestone, bituminous limestone (Kabalar Formation). These units are conformably overlain by the Eocene age basalt-andesite and pyroclastic rocks (Meyildere volcanics). The Paleocene-Eocene aged units are unconformably overlain by the conglomerate-sandstone-mudstone-marl of a lower-middle Miocene lacustrine environment (Hançili Formation). The terrestrial conglomerate-sandstone alternation (Örencik Formation) is the youngest unit in the Cenozoic stratigraphy, and is assumed to be of Pliocene age based its stratigraphic position on older units. Field study shows existence of both folds and faults in the sedimentary cover. Stereographic projections of bedding measured in the field shows N25W/45NW and N60W/4SE-oriented fold axes in the Paleocene-Eocene age units. There are also N76W/12SE and N88E/8NE-oriented folds. The difference in fold-axis orientations suggests that some folds may have been rotated in blocks bound by faults during the post-Paleocene/Eocene period. Whereas, the lower-middle Miocene units manifest N88W/13SE-oriented fold axes. It is thus proposed that the observed difference in the azimuth of fold axes represent two different folding phases, one with NE-SW and the other with N

  9. Devonian shelf basin, Michigan basin, Alpena region

    SciTech Connect

    Gutschick, R.C.

    1986-08-01

    This biostratigraphic study involves the Devonian paleogeography-paleoecology-paleobathymetry of the transition from carbonate platform shelf margin to basinal sedimentation for the northern part of the Michigan basin in the Alpena region. Shelf-basin analysis is based on lithofacies, rock colors, concretion, biostratigraphy, paleoecology of faunas - especially microfaunas and trace fossils - stratified water column, eustasy, and application of Walther's Law. Field observations were made on Partridge Point along Lake Huron, where type sections of the Middle Devonian Thunder Bay Limestone and Late Devonian Squaw Bay Limestone are exposed; and the Antrim black shale at Paxton quarry. The Thunder Bay Limestone evolved as a carbonate platform, subtidal shelf-margin aerobic environment dominated by sessile benthic coralline organisms and shelly fauna, but not reef framework. The Squaw Bay Limestone is transitional shelf to basin, with aspects of slope environment and deeper water off-platform, pelagic organic biostromal molluscan-conodont carbonate deposited during the onset of a stratified water column (dysaerobic benthos-polychaete. agglutinated tubes, sulfides) and pycnocline. The Antrim Shale, in an exceptional black shale exposure in the Paxton quarry, represents deep-water basinal deposition whose bottom waters lacked oxygen. Faunas (conodonts, styliolines, radiolarians) and floras (tasmanitids, calamitids, palynomorphs) are from the aerobic pelagic realm, as indicated from concretions and shale fossil evidence. A benthos is lacking, except for bioturbation from organisms introduced by entrained oxygenated distal turbidite dispersion into the barren bottom black muds. Basinal hydrocarbon source rocks are abundant and updip carbonate reservoirs rim the basin. The Antrim Shale sequence contains the interval of Frasnian-Famennian faunal extinction.

  10. Origin of cratonic basins

    NASA Astrophysics Data System (ADS)

    Dev. Klein, George; Hsui, Albert T.

    1987-12-01

    Tectonic subsidence curves show that the Illinois, Michigan, and Williston basins formed by initial fault-controlled mechanical subsidence during rifting and by subsequent thermal subsidence. Thermal subsidence began around 525 Ma in the Illinois Basin, 520 460 Ma in the Michigan Basin, and 530 500 Ma in the Williston Basin. In the Illinois Basin, a second subsidence episode (middle Mississippian through Early Permian) was caused by flexural foreland subsidence in response to the Alleghanian-Hercynian orogeny. Resurgent Permian rifting in the Illinois Basin is inferred because of intrusion of well-dated Permian alnoites; such intrusive rocks are normally associated with rifting processes. The process of formation of these cratonic basins remains controversial. Past workers have suggested mantle phase changes at the base of the crust, mechanical subsidence in response to isostatically uncompensated excess mass following igneous intrusions, intrusion of mantle plumes into the crust, or regional thermal metamorphic events as causes of basin initiation. Cratonic basins of North America, Europe, Africa, and South America share common ages of formation (around 550 to 500 Ma), histories of sediment accumulation, temporal volume changes of sediment fills, and common dates of interregional unconformities. Their common date of formation suggests initiation of cratonic basins in response to breakup of a late Precambrian super-continent. This supercontinent acted as a heat lens that caused partial melting of the lower crust and upper mantle followed by emplacement of anorogenic granites during extensional tectonics in response to supercontinent breakup. Intrusion of anorogenic granites and other partially melted intrusive rocks weakened continental lithosphere, thus providing a zone of localized regional stretching and permitting formation of cratonic basins almost simultaneously over sites of intrusion of these anorogenic granites and other partially melted intrusive rocks.

  11. Vaccination of horses with a recombinant modified vaccinia Ankara virus (MVA) expressing African horse sickness (AHS) virus major capsid protein VP2 provides complete clinical protection against challenge.

    PubMed

    Alberca, Berta; Bachanek-Bankowska, Katarzyna; Cabana, Marta; Calvo-Pinilla, Eva; Viaplana, Elisenda; Frost, Lorraine; Gubbins, Simon; Urniza, Alicia; Mertens, Peter; Castillo-Olivares, Javier

    2014-06-17

    African horse sickness virus (AHSV) is an arthropod-borne pathogen that infects all species of equidae and causes high mortality in horses. Previously, a recombinant modified vaccinia Ankara (MVA) virus expressing the protein VP2 of AHSV serotype 4 was shown to induce virus neutralising antibodies in horses and protected interferon alpha receptor gene knock-out mice (IFNAR -/-) against virulent AHSV challenge. This study builds on the previous work, examining the protective efficacy of MVA-VP2 vaccination in the natural host of AHSV infection. A study group of 4 horses was vaccinated twice with a recombinant MVA virus expressing the major capsid protein (VP2) of AHSV serotype 9. Vaccinated animals and a control group of unvaccinated horses were then challenged with a virulent strain of AHSV-9. The vaccinated animals were completely protected against clinical disease and also against viraemia as measured by standard end-point dilution assays. In contrast, all control horses presented viraemia after challenge and succumbed to the infection. These results demonstrate the potential of recombinant MVA viruses expressing the outer capsid VP2 of AHSV as a protective vaccine against AHSV infection in the field.

  12. Intergenic Region 3 of Modified Vaccinia Ankara is a Functional Site for Insert Gene Expression and Allows for Potent Antigen-Specific Immune Responses

    PubMed Central

    Manuel, Edwin R.; Wang, Zhongde; Li, Zhongqi; La Rosa, Corinna; Zhou, Wendi; Diamond, Don J.

    2010-01-01

    Integration of exogenous DNA into modified vaccinia Ankara (MVA) is often accomplished using mapped deletion sites in the viral genome. Since MVA has a large capacity (≥30kb) for foreign gene inserts and a limited number of unique integration sites, development of additional integration sites is needed to take full advantage of the extraordinary capacity for foreign gene insertion. In this report, we evaluate an alternative insertion site known as intergenic region 3 (IGR3). Recombinant MVA carrying the cytomegalovirus pp65 gene in IGR3 (rMVA-pp65-IGR3) demonstrated expression and genetic stability of the insert gene upon passage. Immunization of transgenic HLA-A2 mice with rMVA-pp65-IGR3 induced robust antigen-specific immune responses. Moreover, rMVA-pp65-IGR3-infected human EBV-transformed B cell lines were able to stimulate high levels of pp65-specific memory T cell responses in human PBMCs. These data support the usage of IGR3 for the development of highly immunogenic rMVA vaccines for clinical or veterinary use. PMID:20471051

  13. The fatal poisoning pattern of Ankara (Turkey) and nearby cities from 2007 to June 2011: a retrospective study in forensic autopsies.

    PubMed

    Karaarslan, Bekir; Karapirli, Mustafa; Kandemir, Eyup; Kucuker, Hudaverdi; Gurler, Mukaddes; Ince, Cengiz Haluk; Akyol, Omer

    2013-11-01

    We aimed to obtain an outline of the nature and number of fatal poisonings which still appear to affect widely the population in Turkey. A total of 5921 forensic autopsies were performed between 2007 and 2011 in Ankara and nearby cities and 366 of them were fatal poisonings (219 male, 147 female). Most of the cases were between 41 and 60 years old (n = 84). Most of the fatalities were reported during winter months (48.1%). Carbon monoxide exposure was the most common reason (66.7%) within all the causes followed by medicine and narcotics (13.9%). Postmortem blood alcohol concentrations in ethyl and methyl alcohol poisonings were 385.1 ± 61.9 and 206.8 ± 138.9 mg/dL, respectively. The most common location of deaths was home (71.3%). Fatal poisonings have been a growing global problem because of some shortcomings about the socioeconomic conditions and increasing illicit drug abuse. The level of education, socioeconomic conditions, and legal approaches are very important for the prevention fatal poisonings.

  14. Self-evaluations of tuberculosis patients about their illnesses at Ankara Atatürk Sanatorium Training and Research Hospital, Turkey.

    PubMed

    Aslan, D; Altintas, H; Emri, S; Cesuroğlu, T; Kotan, O; Koyuncu, S; Malçok, O; Meral, A; Ozcan, S; Sarinç, S

    2004-07-01

    Tuberculosis (TB) is one of the leading causes of morbidity and mortality and almost one-third of the world is infected with this disease. In Turkey, it remains an important public health concern. In many of the studies, social aspects of TB are underestimated. In this study, self-evaluations of TB inpatients between the ages of 18 and 65 were assessed between July 29 and August 01, 2002 at Ankara Atatürk Sanatorium Training and Research Hospital, which is one of the major reference hospitals for TB in Turkey. This was a cross-sectional epidemiological study in which the participation rate was 88.2%. Mean age of the total 97 participants was 41.3 (SD = 13.6) and 80.4% of patients were male. Patients expressed "unhappiness and stress (23.7%)" to be the major cause of their illness. From the patients' point of view, the three major difficulties incorporated in their lives due to TB were "financial problems (27.9%)", "loneliness (9.3%)", and "hospitalization (9.3%)". Relationships between the patients and their social environments were also assessed in five categories: "closest friend at work, closest friend in life, parents, children, and spouse".

  15. Evaluation of oxidative stress tests in patients diagnosed with renal colic in the emergency department of Ankara Ataturk Training and Research Hospital, Turkey.

    PubMed

    Becel, Sinan; Icme, Ferhat; Celik, Gulhan Gulhan; Gunaydin, Gul Pamukcu; Haydar, Gullu Ercan; Gunaydin, Ilyas Ertok; Kavakli, Havva Sahin; Sezgin, Yilmaz

    2015-03-01

    To investigated oxidative stress changes in renal colic patients, and to determine its role in differential diagnosis of renal colic. The cross-sectional study was conducted at Ankara Atatürk Training and Research Hospital, Turkey, from June 2012 to December 2012 and comprised patients with complaints suggesting of renal colic and diagnosed with urinary stone. Healthy individuals were enrolled to form the control group. The patients and the control group were evaluated in terms of oxidative stress parameters. SPSS 17 was used for statistical analysis. Of the 83 subjects, 50(60%) were patients with renal colic, while 33(40%) were healthy controls. Among the patients, 25(50%) were men and 25(50%) were women. Among the controls, there were 17(51.5%) men and 16(48.5%) women. No statistically significant difference was found between the two groups in terms of age and gender (p>0.05). Likewise, no statistically significant difference was found between the oxidative stress indexes of the two groups (p>0.05). There was no significant increase in oxidative stress in patients with renal colic. The result may help in the differential diagnosis of patients with abdominal pain.

  16. The relationship between sports activities and permanent incisor crown fractures in a group of school children aged 7-9 and 11-13 in Ankara, Turkey.

    PubMed

    Cetinbaş, Tuğba; Yildirim, Gözde; Sönmez, Hayriye

    2008-10-01

    The objective of the study was to determine the distribution, aetiology of the crown fractures of permanent anterior teeth in children aged 7-9 and 11-13 years and to identify the role of participation in sports associated with crown fractures. The study population comprised 2570 students from 10 primary schools randomly selected from five municipalities in Ankara, Turkey. Two paediatric dentists examined all permanent maxillary and mandibular incisors for evidence of fracture and completed a standardized examination form to obtain information on the age, gender, severity of incisor injury and frequency and type of sports participation for each child, as well as whether or not children used mouthguards during sports activities. Chi-square and z-tests were used to determine differences. A total of 191 (7.43%) of the 2570 subjects examined were affected by dental trauma. The proportion of fractured incisors was significantly higher in males than in females among older children (P < 0.01). Out of a total of 222 fractured teeth, 84% involved the maxillary central incisors. Bicycling caused significantly higher rates of crown fractures than other types of sports (P < 0.05). The percentage of incisal fractures caused by sports-related accidents was 14.14%. The number of children interested in sports is high, and the sports chosen are generally contact sports. The high rate (14.14%) of crown injuries caused by sports activities supports these findings.

  17. [Isolation of coagulase-positive staphylococci from cheese and ice-cream samples sold in Ankara and some biochemical properties of the isolates].

    PubMed

    Baştepe, S; Köşker, O

    1981-01-01

    Coagulase-positive staphylococci were isolated from different kinds of cheese and ice-cream sold in Ankara and some biochemical properties of these isolates were determined. 55 cheese, 52 ice-cream (107 samples) were examined for the presence of coagulase-positive staphylococci. Baird Parker Medium was used and 26 samples constituting of 13 cheese and 13 ice-cream were found to be contaminated with coagulase-positive staphylococci and ratio of the contaminated samples to the total was calculated as 24.3%. Highest count was determined to be 176, 166/g in Izmir Tulum Cheese, whereas none of the other tulum cheese samples yielded this bacteria. In general, coagulase-positive staphylococci of cheese samples were higher than ice-cream samples. Among the ice-cream samples highest coagulase-positive staphylococci count was obtained in nutty ice-cream. From the 26 contaminated samples 164 coagulase-positive staphylococci were isolated. Results indicate that an important number of the coagulase forming isolates were also phosphatase positive, forming pigment and haemolysin, able to utilize mannitol. No relation could be observed between the coagulase formation and ability to produce lysin.

  18. Prime-boost vaccination with chimpanzee adenovirus and modified vaccinia Ankara encoding TRAP provides partial protection against Plasmodium falciparum infection in Kenyan adults

    PubMed Central

    Edwards, Nick J.; Roberts, Rachel; Mwacharo, Jedidah; Bowyer, Georgina; Bliss, Carly; Hodgson, Susanne H.; Njuguna, Patricia; Viebig, Nicola K.; Nicosia, Alfredo; Gitau, Evelyn; Douglas, Sandy; Illingworth, Joe; Marsh, Kevin; Lawrie, Alison; Imoukhuede, Egeruan B.; Ewer, Katie

    2015-01-01

    Protective immunity to the liver stage of the malaria parasite can be conferred by vaccine-induced T cells, but no subunit vaccination approach based on cellular immunity has shown efficacy in field studies. We randomly allocated 121 healthy adult male volunteers in Kilifi, Kenya, to vaccination with the recombinant viral vectors chimpanzee adenovirus 63 (ChAd63) and modified vaccinia Ankara (MVA), both encoding the malaria peptide sequence ME-TRAP (the multiple epitope string and thrombospondin-related adhesion protein), or to vaccination with rabies vaccine as a control. We gave antimalarials to clear parasitemia and conducted PCR (polymerase chain reaction) analysis on blood samples three times a week to identify infection with the malaria parasite Plasmodium falciparum. On Cox regression, vaccination reduced the risk of infection by 67% [95% confidence interval (CI), 33 to 83%; P = 0.002] during 8 weeks of monitoring. T cell responses to TRAP peptides 21 to 30 were significantly associated with protection (hazard ratio,0.24; 95% CI, 0.08 to 0.75; P = 0.016). PMID:25947165

  19. Prime-boost vaccination with chimpanzee adenovirus and modified vaccinia Ankara encoding TRAP provides partial protection against Plasmodium falciparum infection in Kenyan adults.

    PubMed

    Ogwang, Caroline; Kimani, Domtila; Edwards, Nick J; Roberts, Rachel; Mwacharo, Jedidah; Bowyer, Georgina; Bliss, Carly; Hodgson, Susanne H; Njuguna, Patricia; Viebig, Nicola K; Nicosia, Alfredo; Gitau, Evelyn; Douglas, Sandy; Illingworth, Joe; Marsh, Kevin; Lawrie, Alison; Imoukhuede, Egeruan B; Ewer, Katie; Urban, Britta C; S Hill, Adrian V; Bejon, Philip

    2015-05-06

    Protective immunity to the liver stage of the malaria parasite can be conferred by vaccine-induced T cells, but no subunit vaccination approach based on cellular immunity has shown efficacy in field studies. We randomly allocated 121 healthy adult male volunteers in Kilifi, Kenya, to vaccination with the recombinant viral vectors chimpanzee adenovirus 63 (ChAd63) and modified vaccinia Ankara (MVA), both encoding the malaria peptide sequence ME-TRAP (the multiple epitope string and thrombospondin-related adhesion protein), or to vaccination with rabies vaccine as a control. We gave antimalarials to clear parasitemia and conducted PCR (polymerase chain reaction) analysis on blood samples three times a week to identify infection with the malaria parasite Plasmodium falciparum. On Cox regression, vaccination reduced the risk of infection by 67% [95% confidence interval (CI), 33 to 83%; P = 0.002] during 8 weeks of monitoring. T cell responses to TRAP peptides 21 to 30 were significantly associated with protection (hazard ratio, 0.24; 95% CI, 0.08 to 0.75; P = 0.016).

  20. An intact signal peptide on dengue virus E protein enhances immunogenicity for CD8(+) T cells and antibody when expressed from modified vaccinia Ankara.

    PubMed

    Quinan, Bárbara R; Flesch, Inge E A; Pinho, Tânia M G; Coelho, Fabiana M; Tscharke, David C; da Fonseca, Flávio G

    2014-05-23

    Dengue is a global public health concern and this is aggravated by a lack of vaccines or antiviral therapies. Despite the well-known role of CD8(+) T cells in the immunopathogenesis of Dengue virus (DENV), only recent studies have highlighted the importance of this arm of the immune response in protection against the disease. Thus, the majority of DENV vaccine candidates are designed to achieve protective titers of neutralizing antibodies, with less regard for cellular responses. Here, we used a mouse model to investigate CD8(+) T cell and humoral responses to a set of potential DENV vaccines based on recombinant modified vaccinia virus Ankara (rMVA). To enable this study, we identified two CD8(+) T cell epitopes in the DENV-3 E protein in C57BL/6 mice. Using these we found that all the rMVA vaccines elicited DENV-specific CD8(+) T cells that were cytotoxic in vivo and polyfunctional in vitro. Moreover, vaccines expressing the E protein with an intact signal peptide sequence elicited more DENV-specific CD8(+) T cells than those expressing E proteins in the cytoplasm. Significantly, it was these same ER-targeted E protein vaccines that elicited antibody responses. Our results support the further development of rMVA vaccines expressing DENV E proteins and add to the tools available for dengue vaccine development.

  1. Safety, Immunogenicity, and Surrogate Markers of Clinical Efficacy for Modified Vaccinia Ankara as a Smallpox Vaccine in HIV-Infected Subjects

    PubMed Central

    Greenberg, Richard N.; Overton, Edgar Turner; Haas, David W.; Frank, Ian; Goldman, Mitchell; von Krempelhuber, Alfred; Virgin, Garth; Bädeker, Nicole; Vollmar, Jens; Chaplin, Paul

    2013-01-01

    Background. Human immunodeficiency virus (HIV)–infected persons are at higher risk for serious complications associated with traditional smallpox vaccines. Alternative smallpox vaccines with an improved safety profile would address this unmet medical need. Methods. The safety and immunogenicity of modified vaccinia Ankara (MVA) was assessed in 91 HIV-infected adult subjects (CD4+ T-cell counts, ≥350 cells/mm3) and 60 uninfected volunteers. The primary objectives were to evaluate the safety of MVA and immunogenicity in HIV-infected and uninfected subjects. As a measure of the potential efficacy of MVA, the ability to boost the memory response in people previously vaccinated against smallpox was evaluated by the inclusion of vaccinia-experienced HIV-infected and HIV-uninfected subjects. Results. MVA was well tolerated and immunogenic in all subjects. Antibody responses were comparable between uninfected and HIV-infected populations, with only 1 significantly lower total antibody titer at 2 weeks after the second vaccination, while no significant differences were observed for neutralizing antibodies. MVA rapidly boosted the antibody responses in vaccinia-experienced subjects, supporting the efficacy of MVA against variola. Conclusions. MVA is a promising candidate as a safer smallpox vaccine, even for immunocompromised individuals, a group for whom current smallpox vaccines have an unacceptable safety profile. Clinical Trials Registration. NCT00189904. PMID:23225902

  2. Great Basin insect outbreaks

    Treesearch

    Barbara Bentz; Diane Alston; Ted Evans

    2008-01-01

    Outbreaks of native and exotic insects are important drivers of ecosystem dynamics in the Great Basin. The following provides an overview of range, forest, ornamental, and agricultural insect outbreaks occurring in the Great Basin and the associated management issues and research needs.

  3. Great Basin aspen ecosystems

    Treesearch

    Dale L. Bartos

    2008-01-01

    The health of quaking aspen (Populus tremuloides) in the Great Basin is of growing concern. The following provides an overview of aspen decline and die-off in areas within and adjacent to the Great Basin and suggests possible directions for research and management.

  4. K Basin safety analysis

    SciTech Connect

    Porten, D.R.; Crowe, R.D.

    1994-12-16

    The purpose of this accident safety analysis is to document in detail, analyses whose results were reported in summary form in the K Basins Safety Analysis Report WHC-SD-SNF-SAR-001. The safety analysis addressed the potential for release of radioactive and non-radioactive hazardous material located in the K Basins and their supporting facilities. The safety analysis covers the hazards associated with normal K Basin fuel storage and handling operations, fuel encapsulation, sludge encapsulation, and canister clean-up and disposal. After a review of the Criticality Safety Evaluation of the K Basin activities, the following postulated events were evaluated: Crane failure and casks dropped into loadout pit; Design basis earthquake; Hypothetical loss of basin water accident analysis; Combustion of uranium fuel following dryout; Crane failure and cask dropped onto floor of transfer area; Spent ion exchange shipment for burial; Hydrogen deflagration in ion exchange modules and filters; Release of Chlorine; Power availability and reliability; and Ashfall.

  5. Reserves in western basins

    SciTech Connect

    Caldwell, R.H.; Cotton, B.W.

    1995-04-01

    The objective of this project is to investigate the reserves potential of tight gas reservoirs in three Rocky Mountain basins: the Greater Green River (GGRB), Uinta and Piceance basins. The basins contain vast gas resources that have been estimated in the thousands of Tcf hosted in low permeability clastic reservoirs. This study documents the productive characteristics of these tight reservoirs, requantifies gas in place resources, and characterizes the reserves potential of each basin. The purpose of this work is to promote understanding of the resource and to encourage its exploitation by private industry. At this point in time, the GGRB work has been completed and a final report published. Work is well underway in the Uinta and Piceance basins which are being handled concurrently, with reports on these basins being scheduled for the middle of this year. Since the GGRB portion of the project has been completed, this presentation win focus upon that basin. A key conclusion of this study was the subdivision of the resource, based upon economic and technological considerations, into groupings that have distinct properties with regard to potential for future producibility, economics and risk profile.

  6. South American sedimentary basins

    SciTech Connect

    Urien, C.M.

    1984-04-01

    More than 64 sedimentary basins have been identified on the South American continent. According to their regional structural character and tectonic setting, they are classified in 4 super groups. About 20 interior or intracratonic basins occur on South American cratons (Guayanas, Brazilian, and Patagonian). In most cases, their sedimentary fill is Paleozoic or early Mesozoic. Rift or transverse grabens resulting from incipient sea floor spreading extend towards the continental margin. Seventeen basins are located along the Atlantic stable margin, and consist primarily of half grabens with downfaulted seaward blocks. These rifts (or pull-apart basins) were separated as results of the migration of the African and American continental blocks. Therefore the sedimentation is chiefly Cretaceous and Tertiary. On the western edge of South American cratons, almost 20 basins of downwarped blocks extend from Orinoco down to the Malvinas plateau in a relatively uninterrupted chain of retroarc basins, bordered by the Andean orogen. They lie on a flexured Precambrian and Paleozoic basement, and are highly deformed in the west (Subandean belt) due to the action of compressional forces caused by the tectonic influence of the Mesozoic Andean batholith. Westward, the Pacific margin is bordered by 27 foreland and forearc basins, which alternate from north to south on an unstable or quasistable margin, fringed by a trench and slope complex where the ocean crust is subducted beneath the continental plate.

  7. Construction at Turn Basin

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. Precast concrete poles are being driven to a depth of about 70 feet into the bedrock below the water around the turn basin; later filled with concrete. The upgrades are necessary to accommodate the increased weight of the core stage along with ground support and transportation equipment aboard the modified barge Pegasus. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  8. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. A crane will be used to lift up precast concrete poles and position them to be driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the increased weight of the core stage along with ground support and transportation equipment aboard the modified barge Pegasus. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  9. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. Precast concrete poles are being driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the increased weight of the core stage along with ground support and transportation equipment aboard the modified barge Pegasus. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  10. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. A crane will be used to lift up precast concrete poles and position them to be driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the 300,000-pound core booster aboard the modified Pegasus barge. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  11. A flow cytometry-based immuno-titration assay for rapid and accurate titer determination of modified vaccinia Ankara virus vectors.

    PubMed

    Li, Zengji; Ling, Loni; Liu, Xiaohui; Laus, Reiner; Delcayre, Alain

    2010-10-01

    A flow cytometry-based immuno-titration titer assay was established to determine infectious unit (IU) and transducing unit (TU) of modified vaccinia Ankara (MVA) virus vectors. This titration method enumerates infected cells by measuring the expression of viral protein for IU and transgene protein for TU in individual cells after staining with fluorophore-conjugated antibodies. It presents many advantages over standard virus titration approaches, such as TCID(50) or plaque assay, for its convenience, rapidity and accuracy as illustrated by excellent assay linearity and reproducibility. Importantly, the IU and the TCID(50) assays generated similar batch-specific titer values when testing varied MVA-derived virus preparations. Assay development revealed that the post-infection time at which viral protein expression is evaluated, host cell type, and blocking the formation and release of progeny virion with nocodazole, an anti-microtubule agent or rifampin, a specific vaccinia virus assembly inhibitor, are critical parameters for the precision, robustness, and accuracy of IU titer determination. An added advantage of this assay is that it enables the concurrent determination of IU and transducing units (TU) by measuring the expression of a transgene product when testing recombinant viruses. The latter was demonstrated using a MVA vector carrying a human HER-2 gene fragment as model. Hence, this assay is very versatile in that it can be used to determine IU as well as multiple TU titers simultaneously. Furthermore, it can readily be adapted to other poxvirus vectors. Copyright (c) 2010 Elsevier B.V. All rights reserved.

  12. Environmental Harmony and Evaluation of Advertisement Billboards with Digital Photogrammetry Technique and GIS Capabilities: A Case Study in the City of Ankara.

    PubMed

    Aydın, Cevdetx C; Nisancı, Recep

    2008-05-19

    Geographical Information Systems (GIS) have been gaining a growing interest in Turkey. Many local governments and public agencies have been struggling to set up such systems to serve the needs and meet public requirements. Urban life shelters the advertisement reality which is presented at various places, on vehicles, shops etc. in daily life. It can be said that advertisement is a part of daily life in urban area, especially in city centers. In addition, one of the main sources of revenue for municipalities comes from advertising and notices. The advertising sector provides a great level of income today. Therefore advertising is individually very important for local governments and urban management. Although it is valuable for local governments, it is also very important for urban management to place these advertisement signs and billboards in an orderly fashion which is pleasing to the eye. Another point related to this subject is the systematic control mechanism which is necessary for collecting taxes regularly and updating. In this paper, first practical meaning of notice and advertisement subject, problem definition and objectives are described and then legal support and daily practice are revised. Current practice and problems are mentioned. Possibilities of measuring and obtaining necessary information by using digital images and transferring them to spatial databases are studied. By this study, a modern approach was developed for urban management and municipalities by using information technology which is an alternative to current application. Criteria which provide environmental harmony such as urban beauty, colour, compatibility and safety were also evaluated. It was finally concluded that measuring commercial signs and keeping environmental harmony under control for urban beauty can be provided by Digital Photogrammetry (DP) technique and GIS capabilities which were studied with pilot applications in the city center of Ankara.

  13. Environmental Harmony and Evaluation of Advertisement Billboards with Digital Photogrammetry Technique and GIS Capabilities: A Case Study in the City of Ankara

    PubMed Central

    Aydın, Cevdet C.; Nişancı, Recep

    2008-01-01

    Geographical Information Systems (GIS) have been gaining a growing interest in Turkey. Many local governments and public agencies have been struggling to set up such systems to serve the needs and meet public requirements. Urban life shelters the advertisement reality which is presented at various places, on vehicles, shops etc. in daily life. It can be said that advertisement is a part of daily life in urban area, especially in city centers. In addition, one of the main sources of revenue for municipalities comes from advertising and notices. The advertising sector provides a great level of income today. Therefore advertising is individually very important for local governments and urban management. Although it is valuable for local governments, it is also very important for urban management to place these advertisement signs and billboards in an orderly fashion which is pleasing to the eye. Another point related to this subject is the systematic control mechanism which is necessary for collecting taxes regularly and updating. In this paper, first practical meaning of notice and advertisement subject, problem definition and objectives are described and then legal support and daily practice are revised. Current practice and problems are mentioned. Possibilities of measuring and obtaining necessary information by using digital images and transferring them to spatial databases are studied. By this study, a modern approach was developed for urban management and municipalities by using information technology which is an alternative to current application. Criteria which provide environmental harmony such as urban beauty, colour, compatibility and safety were also evaluated. It was finally concluded that measuring commercial signs and keeping environmental harmony under control for urban beauty can be provided by Digital Photogrammetry (DP) technique and GIS capabilities which were studied with pilot applications in the city center of Ankara. PMID:27879877

  14. Immunity, safety and protection of an Adenovirus 5 prime--Modified Vaccinia virus Ankara boost subunit vaccine against Mycobacterium avium subspecies paratuberculosis infection in calves.

    PubMed

    Bull, Tim J; Vrettou, Christina; Linedale, Richard; McGuinnes, Catherine; Strain, Sam; McNair, Jim; Gilbert, Sarah C; Hope, Jayne C

    2014-10-29

    Vaccination is the most cost effective control measure for Johne's disease caused by Mycobacterium avium subspecies paratuberculosis (MAP) but currently available whole cell killed formulations have limited efficacy and are incompatible with the diagnosis of bovine tuberculosis by tuberculin skin test. We have evaluated the utility of a viral delivery regimen of non-replicative human Adenovirus 5 and Modified Vaccinia virus Ankara recombinant for early entry MAP specific antigens (HAV) to show protection against challenge in a calf model and extensively screened for differential immunological markers associated with protection. We have shown that HAV vaccination was well tolerated, could be detected using a differentiation of infected and vaccinated animals (DIVA) test, showed no cross-reactivity with tuberculin and provided a degree of protection against challenge evidenced by a lack of faecal shedding in vaccinated animals that persisted throughout the 7 month infection period. Calves given HAV vaccination had significant priming and boosting of MAP derived antigen (PPD-J) specific CD4+, CD8+ IFN-γ producing T-cell populations and, upon challenge, developed early specific Th17 related immune responses, enhanced IFN-γ responses and retained a high MAP killing capacity in blood. During later phases post MAP challenge, PPD-J antigen specific IFN-γ and Th17 responses in HAV vaccinated animals corresponded with improvements in peripheral bacteraemia. By contrast a lack of IFN-γ, induction of FoxP3+ T cells and increased IL-1β and IL-10 secretion were indicative of progressive infection in Sham vaccinated animals. We conclude that HAV vaccination shows excellent promise as a new tool for improving control of MAP infection in cattle.

  15. Balance between activation and regulation of HIV-specific CD8+ T-cell response after modified vaccinia Ankara B therapeutic vaccination.

    PubMed

    Rallón, Norma; Mothe, Beatriz; Lopez Bernaldo de Quiros, Juan C; Plana, Montserrat; Ligos, José M; Montoya, María; Muñoz-Fernández, Maria A; Esteban, Mariano; Garcia, Felipe; Brander, Christian; Benito, José M

    2016-02-20

    The causes of HIV-vaccines failure are poorly understood. Therapeutic vaccination with modified vaccinia Ankara (MVA)-B in HIV-1-infected individuals did not control the virus upon analytical treatment interruption (ATI). We investigated whether the functional characteristics of HIV-specific CD8 T-cell responses stimulated by this vaccine, and the level of exhaustion of these cells might explain these results. Twenty-one HIV-1 chronically infected patients on combination antiretroviral therapy, included in the therapeutic vaccine trial RISVAC03, were studied: 13 immunized and eight controls. Functional characteristics, cytotoxic potential and exhaustion of HIV-specific CD8 T cells, were evaluated by polychromatic flow cytometry. Differences between groups were tested using nonparametric tests. MVA-B vaccine induced an increase in HIV-specific CD8 T-cell response, but also increased their levels of exhaustion. At week 18 (following three immunizations) the level of response increased with respect to baseline (P = 0.02). A significant increase at weeks 18 and 24 (ATI) in granzyme B content was also observed. Interestingly, an increase in expression of exhaustion markers was found at weeks 18 (P = 0.006) and 24 (P = 0.01). However, there was no significant change in the functional profile of vaccine-induced CD8 cells. At week 36, in parallel to the rebound of plasma viremia after 12 weeks ATI, a significant increase in the level of CD8 response, in granzyme B content and in exhaustion markers expression, was observed in both groups. We show that therapeutic vaccination with MVA-B tilts the balance between activation and regulation of the response of HIV-specific CD8 T cells towards regulation, which impacts on the viral rebound after ATI.

  16. Modified Vaccinia Virus Ankara Triggers Type I IFN Production in Murine Conventional Dendritic Cells via a cGAS/STING-Mediated Cytosolic DNA-Sensing Pathway

    PubMed Central

    Cao, Hua; Avogadri, Francesca; Dai, Lianpan; Drexler, Ingo; Joyce, Johanna A.; Li, Xiao-Dong; Chen, Zhijian; Merghoub, Taha; Shuman, Stewart; Deng, Liang

    2014-01-01

    Modified vaccinia virus Ankara (MVA) is an attenuated poxvirus that has been engineered as a vaccine against infectious agents and cancers. Our goal is to understand how MVA modulates innate immunity in dendritic cells (DCs), which can provide insights to vaccine design. In this study, using murine bone marrow-derived dendritic cells, we assessed type I interferon (IFN) gene induction and protein secretion in response to MVA infection. We report that MVA infection elicits the production of type I IFN in murine conventional dendritic cells (cDCs), but not in plasmacytoid dendritic cells (pDCs). Transcription factors IRF3 (IFN regulatory factor 3) and IRF7, and the positive feedback loop mediated by IFNAR1 (IFN alpha/beta receptor 1), are required for the induction. MVA induction of type I IFN is fully dependent on STING (stimulator of IFN genes) and the newly discovered cytosolic DNA sensor cGAS (cyclic guanosine monophosphate-adenosine monophosphate synthase). MVA infection of cDCs triggers phosphorylation of TBK1 (Tank-binding kinase 1) and IRF3, which is abolished in the absence of cGAS and STING. Furthermore, intravenous delivery of MVA induces type I IFN in wild-type mice, but not in mice lacking STING or IRF3. Treatment of cDCs with inhibitors of endosomal and lysosomal acidification or the lysosomal enzyme Cathepsin B attenuated MVA-induced type I IFN production, indicating that lysosomal enzymatic processing of virions is important for MVA sensing. Taken together, our results demonstrate a critical role of the cGAS/STING-mediated cytosolic DNA-sensing pathway for type I IFN induction in cDCs by MVA. We present evidence that vaccinia virulence factors E3 and N1 inhibit the activation of IRF3 and the induction of IFNB gene in MVA-infected cDCs. PMID:24743339

  17. Induction of HIV immunity in the genital tract after intranasal delivery of a MVA vector: enhanced immunogenicity after DNA prime-modified vaccinia virus Ankara boost immunization schedule.

    PubMed

    Gherardi, M Magdalena; Pérez-Jiménez, Eva; Nájera, José Luis; Esteban, Mariano

    2004-05-15

    Vaccines intended to prevent mucosal transmission of HIV should be able to induce multiple immune effectors in the host including Abs and cell-mediated immune responses at mucosal sites. The aim of this study was to characterize and to enhance the immunogenicity of a recombinant modified vaccinia virus Ankara (MVA) expressing HIV-1 Env IIIB Ag (MVAenv) inoculated in BALB/c mice by mucosal routes. Intravaginal inoculation of MVAenv was not immunogenic, whereas intranasally it induced a significant immune response to the HIV Ag. Intranasal codelivery of MVAenv plus cholera toxin (CT) significantly enhanced the cellular and humoral immune response against Env in the spleen and genitorectal draining lymph nodes, respectively. Heterologous DNAenv prime-MVAenv boost by intranasal immunization, together with CT, produced a cellular immune response in the spleen 10-fold superior to that in the absence of CT. A key finding of these studies was that both MVAenv/MVAenv and DNAenv/MVAenv schemes, plus CT, induced a specific mucosal CD8(+) T cell response in genital tissue and draining lymph nodes. In addition, both immunizations also generated systemic Abs, and more importantly, mucosal IgA and IgG Abs in vaginal washings. Specific secretion of beta-chemokines was also generated by both immunizations, with a stronger response in mice immunized by the DNA-CT/MVA-CT regimen. Our findings are of relevance in the area of vaccine development and support the optimization of protocols of immunization based on MVA as vaccine vectors to induce mucosal immune responses against HIV.

  18. Deletion of Specific Immune-Modulatory Genes from Modified Vaccinia Virus Ankara-Based HIV Vaccines Engenders Improved Immunogenicity in Rhesus Macaques

    PubMed Central

    O'Mara, Leigh A.; Gangadhara, Sailaja; McQuoid, Monica; Zhang, Xiugen; Zheng, Rui; Gill, Kiran; Verma, Meena; Yu, Tianwei; Johnson, Brent; Li, Bing; Derdeyn, Cynthia A.; Ibegbu, Chris; Altman, John D.; Hunter, Eric; Feinberg, Mark B.

    2012-01-01

    Modified vaccinia virus Ankara (MVA) is a safe, attenuated orthopoxvirus that is being developed as a vaccine vector but has demonstrated limited immunogenicity in several early-phase clinical trials. Our objective was to rationally improve the immunogenicity of MVA-based HIV/AIDS vaccines via the targeted deletion of specific poxvirus immune-modulatory genes. Vaccines expressing codon-optimized HIV subtype C consensus Env and Gag antigens were generated from MVA vector backbones that (i) harbor simultaneous deletions of four viral immune-modulatory genes, encoding an interleukin-18 (IL-18) binding protein, an IL-1β receptor, a dominant negative Toll/IL-1 signaling adapter, and CC-chemokine binding protein (MVAΔ4-HIV); (ii) harbor a deletion of an additional (fifth) viral gene, encoding uracil-DNA glycosylase (MVAΔ5-HIV); or (iii) represent the parental MVA backbone as a control (MVA-HIV). We performed head-to-head comparisons of the cellular and humoral immune responses that were elicited by these vectors during homologous prime-boost immunization regimens utilizing either high-dose (2 × 108 PFU) or low-dose (1 × 107 PFU) intramuscular immunization of rhesus macaques. At all time points, a majority of the HIV-specific T cell responses, elicited by all vectors, were directed against Env, rather than Gag, determinants, as previously observed with other vector systems. Both modified vectors elicited up to 6-fold-higher frequencies of HIV-specific CD8 and CD4 T cell responses and up to 25-fold-higher titers of Env (gp120)-specific binding (nonneutralizing) antibody responses that were relatively transient in nature. While the correlates of protection against HIV infection remain incompletely defined, our results indicate that the rational deletion of specific genes from MVA vectors can positively alter their cellular and humoral immunogenicity profiles in nonhuman primates. PMID:22973033

  19. Specificity and 6-Month Durability of Immune Responses Induced by DNA and Recombinant Modified Vaccinia Ankara Vaccines Expressing HIV-1 Virus-Like Particles

    PubMed Central

    Goepfert, Paul A.; Elizaga, Marnie L.; Seaton, Kelly; Tomaras, Georgia D.; Montefiori, David C.; Sato, Alicia; Hural, John; DeRosa, Stephen C.; Kalams, Spyros A.; McElrath, M. Juliana; Keefer, Michael C.; Baden, Lindsey R.; Lama, Javier R.; Sanchez, Jorge; Mulligan, Mark J.; Buchbinder, Susan P.; Hammer, Scott M.; Koblin, Beryl A.; Pensiero, Michael; Butler, Chris; Moss, Bernard; Robinson, Harriet L.; Donastorg, Yeycy; Qin, Li; Lawrence, Dale; Cardinali, Massimo; Bae, Jin; Holt, Renée; Redinger, Huguette; Johannessen, Jan; Broder, Gail; Moody-White, Jerri; McKay, Butch; Calazans, Gabriela; Bentley, Carter; Kakinami, Lisa; Skibinski, Katie; Estep, Scharla; Tseng, Jenny; Swenson, Molly; Madenwald, Tamra; Overton, Edgar Turner; Edupuganti, Srilatha; Rouphael, Nadine; Whitaker, Jennifer; Hay, C Mhorag; Bunce, Catherine A; Gonzales, Pedro; Hurtado, Juan Carlos; Dolin, Raphael; Mayer, Ken; Walsh, Steven; Johnson, Jennifer

    2014-01-01

    Background. Clade B DNA and recombinant modified vaccinia Ankara (MVA) vaccines producing virus-like particles displaying trimeric membrane-bound envelope glycoprotein (Env) were tested in a phase 2a trial in human immunodeficiency virus (HIV)–uninfected adults for safety, immunogenicity, and 6-month durability of immune responses. Methods. A total of 299 individuals received 2 doses of JS7 DNA vaccine and 2 doses of MVA/HIV62B at 0, 2, 4, and 6 months, respectively (the DDMM regimen); 3 doses of MVA/HIV62B at 0, 2, and 6 months (the MMM regimen); or placebo injections. Results. At peak response, 93.2% of the DDMM group and 98.4% of the MMM group had binding antibodies for Env. These binding antibodies were more frequent and of higher magnitude for the transmembrane subunit (gp41) than the receptor-binding subunit (gp120) of Env. For both regimens, response rates were higher for CD4+ T cells (66.4% in the DDMM group and 43.1% in the MMM group) than for CD8+ T cells (21.8% in the DDMM group and 14.9% in the MMM group). Responding CD4+ and CD8+ T cells were biased toward Gag, and >70% produced 2 or 3 of the 4 cytokines evaluated (ie, interferon γ, interleukin 2, tumor necrosis factor α, and granzyme B). Six months after vaccination, the magnitudes of antibodies and T-cell responses had decreased by <3-fold. Conclusions. DDMM and MMM vaccinations with virus-like particle–expressing immunogens elicited durable antibody and T-cell responses. PMID:24403557

  20. Deletion of specific immune-modulatory genes from modified vaccinia virus Ankara-based HIV vaccines engenders improved immunogenicity in rhesus macaques.

    PubMed

    Garber, David A; O'Mara, Leigh A; Gangadhara, Sailaja; McQuoid, Monica; Zhang, Xiugen; Zheng, Rui; Gill, Kiran; Verma, Meena; Yu, Tianwei; Johnson, Brent; Li, Bing; Derdeyn, Cynthia A; Ibegbu, Chris; Altman, John D; Hunter, Eric; Feinberg, Mark B

    2012-12-01

    Modified vaccinia virus Ankara (MVA) is a safe, attenuated orthopoxvirus that is being developed as a vaccine vector but has demonstrated limited immunogenicity in several early-phase clinical trials. Our objective was to rationally improve the immunogenicity of MVA-based HIV/AIDS vaccines via the targeted deletion of specific poxvirus immune-modulatory genes. Vaccines expressing codon-optimized HIV subtype C consensus Env and Gag antigens were generated from MVA vector backbones that (i) harbor simultaneous deletions of four viral immune-modulatory genes, encoding an interleukin-18 (IL-18) binding protein, an IL-1β receptor, a dominant negative Toll/IL-1 signaling adapter, and CC-chemokine binding protein (MVAΔ4-HIV); (ii) harbor a deletion of an additional (fifth) viral gene, encoding uracil-DNA glycosylase (MVAΔ5-HIV); or (iii) represent the parental MVA backbone as a control (MVA-HIV). We performed head-to-head comparisons of the cellular and humoral immune responses that were elicited by these vectors during homologous prime-boost immunization regimens utilizing either high-dose (2 × 10(8) PFU) or low-dose (1 × 10(7) PFU) intramuscular immunization of rhesus macaques. At all time points, a majority of the HIV-specific T cell responses, elicited by all vectors, were directed against Env, rather than Gag, determinants, as previously observed with other vector systems. Both modified vectors elicited up to 6-fold-higher frequencies of HIV-specific CD8 and CD4 T cell responses and up to 25-fold-higher titers of Env (gp120)-specific binding (nonneutralizing) antibody responses that were relatively transient in nature. While the correlates of protection against HIV infection remain incompletely defined, our results indicate that the rational deletion of specific genes from MVA vectors can positively alter their cellular and humoral immunogenicity profiles in nonhuman primates.

  1. The orthopoxvirus 68-kilodalton ankyrin-like protein is essential for DNA replication and complete gene expression of modified vaccinia virus Ankara in nonpermissive human and murine cells.

    PubMed

    Sperling, Karin M; Schwantes, Astrid; Staib, Caroline; Schnierle, Barbara S; Sutter, Gerd

    2009-06-01

    Modified vaccinia virus Ankara (MVA) is a highly attenuated and replication-deficient vaccinia virus (VACV) that is being evaluated as replacement smallpox vaccine and candidate viral vector. MVA lacks many genes associated with virulence and/or regulation of virus tropism. The 68-kDa ankyrin-like protein (68k-ank) is the only ankyrin repeat-containing protein that is encoded by the MVA genome and is highly conserved throughout the Orthopoxvirus genus. We showed previously that 68k-ank is composed of ankyrin repeats and an F-box-like domain and forms an SCF ubiquitin ligase complex together with the cellular proteins Skp1a and Cullin-1. We now report that 68k-ank (MVA open reading frame 186R) is an essential factor for completion of the MVA intracellular life cycle in nonpermissive human and murine cells. Infection of mouse NIH 3T3 and human HaCaT cells with MVA with a deletion of the 68k-ank gene (MVA-Delta68k-ank) was characterized by an extensive reduction of viral intermediate RNA and protein, as well as late transcripts and drastically impaired late protein synthesis. Furthermore, infections with MVA-Delta68k-ank failed to induce the host protein shutoff that is characteristic of VACV infections. Although we demonstrated that proteasome function in general is essential for the completion of the MVA molecular life cycle, we found that a mutant 68k-ank protein with a deletion of the F-box-like domain was able to fully complement the deficiency of MVA-Delta68k-ank to express all classes of viral genes. Thus, our data demonstrate that the 68k-ank protein contains another critical domain that may function independently of SCF ubiquitin ligase complex formation, suggesting multiple activities of this interesting regulatory protein.

  2. Specificity and 6-month durability of immune responses induced by DNA and recombinant modified vaccinia Ankara vaccines expressing HIV-1 virus-like particles.

    PubMed

    Goepfert, Paul A; Elizaga, Marnie L; Seaton, Kelly; Tomaras, Georgia D; Montefiori, David C; Sato, Alicia; Hural, John; DeRosa, Stephen C; Kalams, Spyros A; McElrath, M Juliana; Keefer, Michael C; Baden, Lindsey R; Lama, Javier R; Sanchez, Jorge; Mulligan, Mark J; Buchbinder, Susan P; Hammer, Scott M; Koblin, Beryl A; Pensiero, Michael; Butler, Chris; Moss, Bernard; Robinson, Harriet L

    2014-07-01

    Clade B DNA and recombinant modified vaccinia Ankara (MVA) vaccines producing virus-like particles displaying trimeric membrane-bound envelope glycoprotein (Env) were tested in a phase 2a trial in human immunodeficiency virus (HIV)-uninfected adults for safety, immunogenicity, and 6-month durability of immune responses. A total of 299 individuals received 2 doses of JS7 DNA vaccine and 2 doses of MVA/HIV62B at 0, 2, 4, and 6 months, respectively (the DDMM regimen); 3 doses of MVA/HIV62B at 0, 2, and 6 months (the MMM regimen); or placebo injections. At peak response, 93.2% of the DDMM group and 98.4% of the MMM group had binding antibodies for Env. These binding antibodies were more frequent and of higher magnitude for the transmembrane subunit (gp41) than the receptor-binding subunit (gp120) of Env. For both regimens, response rates were higher for CD4(+) T cells (66.4% in the DDMM group and 43.1% in the MMM group) than for CD8(+) T cells (21.8% in the DDMM group and 14.9% in the MMM group). Responding CD4(+) and CD8(+) T cells were biased toward Gag, and >70% produced 2 or 3 of the 4 cytokines evaluated (ie, interferon γ, interleukin 2, tumor necrosis factor α, and granzyme B). Six months after vaccination, the magnitudes of antibodies and T-cell responses had decreased by <3-fold. DDMM and MMM vaccinations with virus-like particle-expressing immunogens elicited durable antibody and T-cell responses. © The Author 2014. Published by Oxford University Press on behalf of the Infectious Diseases Society of America. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  3. Chemokine (C-C Motif) Receptor 1 Is Required for Efficient Recruitment of Neutrophils during Respiratory Infection with Modified Vaccinia Virus Ankara

    PubMed Central

    Price, Philip J. R.; Luckow, Bruno; Torres-Domínguez, Lino E.; Brandmüller, Christine; Zorn, Julia; Kirschning, Carsten J.; Sutter, Gerd

    2014-01-01

    ABSTRACT Modified vaccinia virus Ankara (MVA) serves as a versatile platform in vaccine development. This highly attenuated orthopoxvirus, which cannot replicate in mammalian cells, triggers strong innate immune responses, including cell migration. Previously, we have shown that induction of chemokine (C-C motif) ligand 2 (CCL2) by MVA is necessary for the recruitment of monocytes and T cells, but not neutrophils, to the lung. Here, we identified neutrophil-attracting chemokines produced by MVA-infected primary murine lung fibroblasts and murine bone marrow-derived macrophages. We demonstrate that MVA, but not vaccinia virus (VACV) strain WR, induces chemokine expression, which is independent of Toll-like receptor 2 (TLR2) signaling. Additionally, we show that both chemokine (C-C motif) receptor 1 (CCR1) and chemokine (C-X-C motif) receptor 2 (CXCR2) are involved in MVA-induced neutrophil chemotaxis in vitro. Finally, intranasal infection of Ccr1−/− mice with MVA, as well as application of the CCR1 antagonist J-113863, revealed a role for CCR1 in leukocyte recruitment, including neutrophils, into the lung. IMPORTANCE Rapid attraction of leukocytes to the site of inoculation is unique to MVA in comparison to other VACV strains. The findings here extend current knowledge about the regulation of MVA-induced leukocyte migration, particularly regarding neutrophils, which could potentially be exploited to improve other VACV strains currently in development as oncolytic viruses and viral vectors. Additionally, the data presented here indicate that the inflammatory response may vary depending on the cell type infected by MVA, highlighting the importance of the site of vaccine application. Moreover, the rapid recruitment of neutrophils and other leukocytes can directly contribute to the induction of adaptive immune responses elicited by MVA inoculation. Thus, a better understanding of leukocyte migration upon MVA infection is particularly relevant for further

  4. Comparing adjuvanted H28 and modified vaccinia virus ankara expressingH28 in a mouse and a non-human primate tuberculosis model.

    PubMed

    Billeskov, Rolf; Christensen, Jan P; Aagaard, Claus; Andersen, Peter; Dietrich, Jes

    2013-01-01

    Here we report for the first time on the immunogenicity and protective efficacy of a vaccine strategy involving the adjuvanted fusion protein "H28" (consisting of Ag85B-TB10.4-Rv2660c) and Modified Vaccinia Virus Ankara expressing H28. We show that a heterologous prime-boost regimen involving priming with H28 in a Th1 adjuvant followed by boosting with H28 expressed by MVA (H28/MVA28) induced the highest percentage of IFN-γ expressing T cells, the highest production of IFN-γ per single cell and the highest induction of CD8 T cells compared to either of the vaccines given alone. In contrast, in mice vaccinated with adjuvanted recombinant H28 alone (H28/H28) we observed the highest production of IL-2 per single cell and the highest frequency of antigen specific TNF-α/IL-2 expressing CD4 T cells pre and post infection. Interestingly, TNF-α/IL-2 expressing central memory-like CD4 T cells showed a significant positive correlation with protection at week 6 post infection, whereas the opposite was observed for post infection CD4 T cells producing only IFN-γ. Moreover, as a BCG booster vaccine in a clinically relevant non-human primate TB model, the H28/H28 vaccine strategy induced a slightly more prominent reduction of clinical disease and pathology for up to one year post infection compared to H28/MVA28. Taken together, our data showed that the adjuvanted subunit and MVA strategies led to different T cell subset combinations pre and post infection and that TNF-α/IL-2 double producing but not IFN-γ single producing CD4 T cell subsets correlated with protection in the mouse TB model. Moreover, our data demonstrated that the H28 vaccine antigen was able to induce strong protection in both a mouse and a non-human primate TB model.

  5. Tectono-stratigraphic evolution and exhumation of the Haymana basin: Unravelling the subduction and collision history of Neotethys in Turkey

    NASA Astrophysics Data System (ADS)

    Gülyüz, Erhan; Özkaptan, Murat; Lefebvre, Côme; Kaymakci, Nuretdin; Persano, Cristina; Stuart, Finlay M.

    2014-05-01

    The Haymana basin straddles the Izmir-Ankara-Erzincan Suture Zone (IAESZ) in the north and Intra-Tauride Suture Zone (ITSZ) in the south. The two suture zones developed in response to the subduction and demise of Neotethys Ocean in Turkey during the late Cretaceous to early Tertiary; the tectonic significance of the basin and its relationship with the ITSZ are still poorly constrained. In order to unravel subduction and subsequent collision history of the Neotethys in the region, we have carried out a detailed analysis of the stratigraphy and sedimentology of the Haymana basin infill and, using a combination of palaeomagnetic and thermochronometric data we have unravelled its structural evolution since its formation. The basin developed on the IAESZ and comprises fore-arc late Cretaceous to foreland Middle Eocene sedimentary sequences. The analysis of the sedimentogical facies and depositional environments indicate four Late Cretaceous to Paleogene key sequences in the basin. These sequences grade laterally and vertically into each other and are continuous from the late Cretaceous to Eocene whereas local progressive syn-sedimentary unconformities and frequent depocenter migrations are common. Late Cretaceous sequences fine upward whereas coarsening upwards sequences are common in the later units. These characteristics possibly reflect the response to local uplift and subsidence in front of south-verging thrust faults associated with the transition from fore-arc to foreland basin settings, following the terminal subduction of the Neotethys at the end of Cretaceous. About 4000 paleomagnetic and magnetostratigraphic data from the basin infill units and the Neogene cover indicate large clockwise vertical axes rotations in the NW and counter-clockwise rotations in the SE part of the basin. We suggest that these rotations are related to the northward movement and indentation of the Gondwana-derived continental blocks into Eurasia. A model of southward thrust propagation

  6. BASINS Framework and Features

    EPA Pesticide Factsheets

    BASINS enables users to efficiently access nationwide environmental databases and local user-specified datasets, apply assessment and planning tools, and run a variety of proven nonpoint loading and water quality models within a single GIS format.

  7. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core booster aboard the barge Pegasus. Construction workers with Southeast Cherokee Construction Inc. work to shore up the turn basin area. A crane will be used to lift up precast concrete poles and position them to be driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the 300,000-pound core booster aboard the modified Pegasus barge. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  8. K Basins Hazard Analysis

    SciTech Connect

    WEBB, R.H.

    1999-12-29

    This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Safety Analysis Report (HNF-SD-WM-SAR-062, Rev.4). This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report.

  9. Turn Basin Construction

    NASA Image and Video Library

    2017-06-30

    At NASA's Kennedy Space Center in Florida, cement is poured as part of a construction project to upgrade the turn basin wharf. The work includes driving multiple precast concrete piles to a depth of about 70 feet to accommodate arrival of the core stage for the agency's Space Launch System (SLS) rocket. When the stage for NASA's SLS departs the Michoud Assembly Facility in New Orleans, it will be shipped by the agency's modified barge to the Launch Complex 39 turn basin.

  10. K Basin Hazard Analysis

    SciTech Connect

    PECH, S.H.

    2000-08-23

    This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Final Safety Analysis Report. This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report.

  11. Nam Con Son Basin

    SciTech Connect

    Tin, N.T.; Ty, N.D.; Hung, L.T.

    1994-07-01

    The Nam Con Son basin is the largest oil and gas bearing basin in Vietnam, and has a number of producing fields. The history of studies in the basin can be divided into four periods: Pre-1975, 1976-1980, 1981-1989, and 1990-present. A number of oil companies have carried out geological and geophysical studies and conducted drilling activities in the basin. These include ONGC, Enterprise Oil, BP, Shell, Petro-Canada, IPL, Lasmo, etc. Pre-Tertiary formations comprise quartz diorites, granodiorites, and metamorphic rocks of Mesozoic age. Cenozoic rocks include those of the Cau Formation (Oligocene and older), Dua Formation (lower Miocene), Thong-Mang Cau Formation (middle Miocene), Nam Con Son Formation (upper Miocene) and Bien Dong Formation (Pliocene-Quaternary). The basement is composed of pre-Cenozoic formations. Three fault systems are evident in the basin: north-south fault system, northeast-southwest fault system, and east-west fault system. Four tectonic zones can also be distinguished: western differentiated zone, northern differentiated zone, Dua-Natuna high zone, and eastern trough zone.

  12. Petrological Features of The Post-Collisional Volcanics on the Izmir-Ankara-Erzincan Suture Zone at Around Almus and Yıldızeli Regions, NE Turkey.

    NASA Astrophysics Data System (ADS)

    Göçmengil, G.; Karacik, Z.; Genç, Ş. C.

    2014-12-01

    Following the closure of the northern Neo-Tethyan ocean, post-collisional magmatism developed both on the Izmir-Ankara-Erzincan suture zone (IAESZ) and the northern (Pontides) and southern (Kırşehir block) continents. Cenozoic volcanics (particularly Middle to Upper Eocene) from the Almus and Yıldızeli regions (NE, Turkey) have poorly known and exposed along the northern and southern part of the IAESZ respectively. In this presentation; we present geological, geochemical and isotopic data of these volcanic rocks to characterize the petrological evolution and petrogenesis on the different tectonic blocks. Almus region, have a composite basement of Mesozoic metamorphic and ophiolitic rocks. Volcanic and sedimentary units of the Middle Eocene covering the basement units have a stratigraphic sequence of: a basal conglomerate; fossiliferous sandstone/shale; epiclastic rocks; auto-brecciated lavas with basalt/basaltic andesite lava flows. All these units are cut by trachyte stocks. Besides, basement of Yıldızeli region consisting of Cretaceous Kırşehir block metamorphics with IAESZ melangé and flysch units. Volcanic and sedimentary units covers the basement are trachyte-trachyandesite lavas; fossiliferous limestone; basalt/basaltic andesite lava flows; pyroclastic units with dacitic lavas. Basalt/basaltic andesites from Almus region are sub-alkaline/mildly alkaline and display middle to high-K character. REE data display relative enrichments in LILE (Sr, K, Rb, Ba, Th) together with negative anomalies of Nb, Ta and P. Trachyte stocks are shoshonitic and display LILE enrichment together with negative patters of Nb, Ta, P and Eu. Besides, trachyte-trachyandesite and basalt/basaltic andesite from Yıldızeli region are sub-alkaline/mildly alkaline with middle-K to shoshonitic character. REE patterns show enrichments in LILE and depletion of Nb, Ta, P and Ti for both rock suites. The 87Sr/86Sr and 143Nd/144Nd ratios of volcanic rocks from both regions, range from 0

  13. The use of certified seeds of improved wheat varieties in farms and the contributions of certified seed usage to enterprise economies: the case of Ankara province in Turkey.

    PubMed

    Tanrivermiş, Harun; Akdoğan, Ilyas

    2007-12-15

    In this research, the use of certificated seeds of improved wheat varieties in farms of Ankara, which have an important share in wheat production of Turkey and the contributions of the certified seeds usage to enterprise economy have been evaluated by using data collected from farms via a questionnaire. The low level of use of certificated wheat seed in farms is associated with many factors, such as price of the seed (cost), yield gains and suitability of the varieties for the farming aims of producers. Average productivity is 49.5% and average net profit is 39.7% higher in the production of wheat with certificated seeds of improved varieties in farms in comparison to farming with traditional varieties. Average productivity in wheat production with uncertified seeds of improved varieties is 24.9% and net profit per unit area is 24.3% higher than wheat production with traditional varieties. The net economic benefit of wheat production using certificated seeds of improved varieties and that of wheat farming with uncertified seeds has been estimated at $ 102.40 and $ 62.70 ha(-1), respectively. Some $ 6.4 benefit is generated in return for $ 1 of expense in wheat farming with certificated seeds of improved varieties instead of traditional varieties. In the absence of state subsidies for certificated seeds the use of uncertified seeds seems to be advantageous for producers. While the amount of subsidy per hectare will be a minimum of $ 101 for certificated seeds per hectare of planting area (as technological improvement), the support will be encouraging for usage of certified seeds. Many variables, such as farm size, use of certified seeds, topography of land, production system, education level and frequency of visiting the agriculture organizations of the producers influence the level of gross profit per unit area in wheat farming. Low level of use of certificated seed in farms decreases the economic benefit of new varieties which are developed as a result of long

  14. Descriptive Features of Mesothelioma Cases Diagnosed in a Special Hospital in Ankara and Assessment of Domestic Environmental Exposure to Asbestosis and Erionite: Preliminary Results

    NASA Astrophysics Data System (ADS)

    Demirkaya, E.; Özden, A.; Aydogdu, K.; Polat, A.; Findik, G.; Agackiran, Y.; Ozaydin, S.; Ozturk, M.; Acikel, C.

    2013-05-01

    Background: Unlike Western countries where asbestosis and erionite exposure is industrial, domestic exposure of these chriystals is common in central and eastern Turkey where they are used as a constrcution material for houses. This life-long exposure to these materials has been showed to be causing endemies of mesothelioma at younger ages in central Turkey. In this study it was aimed to assess the descriptive features of malignant mesothelioma cases and evaluate the domestic exposure of asbestosis and erionite. Method: Data were obtained through retrospective reviewing of the patient files of a pulmonary disease hospital in Ankara. Demographical features such as age, gender, the place of birth, migration and living, age of diagnosis and some clinical features were evaluated. Results: A total of 44 files of patients diagnosed with malignant mesothelioma were screened. The female to male ratio was 19/25. Of the patients 43 (97 %) were born in asbestosis-rich and only one (3 %)was born in erionite-rich region. All of the patients had resided in asbestosis-rich regions where they were born and the places where some of the patients moved were known to be rich for asbestosis as well. The age of diagnosis was between 32 and 78 years and the median age of diagnosis was 54,5 years. Family history of malignancy was negative in 39 patients (88.6%) and was positive in 5 patients (11.4%). History for smoking was 40.9%. The 81.1 % of the patients applied with the complaint of dispnea; 48.8 % with cough and 45.5 % with chest pain. Median time period between the date of disease onset and diagnosis was 91 days. The most rapid diagnosis was made as early as 28 days. Pleural fluid was seen in 95.5 % while pleural thickening was seen in 29,5 % of the patients. Respiratory funcitons were found to be deteriorated in 86.4 %. The histological types of epitheloid and mixt mesothelioma were seen with the percentages of 69 % and 31 % respectively. Conclusion: This was a descriptive study

  15. Innate Immune Sensing of Modified Vaccinia Virus Ankara (MVA) Is Mediated by TLR2-TLR6, MDA-5 and the NALP3 Inflammasome

    PubMed Central

    Delaloye, Julie; Roger, Thierry; Steiner-Tardivel, Quynh-Giao; Le Roy, Didier; Knaup Reymond, Marlies; Akira, Shizuo; Petrilli, Virginie; Gomez, Carmen E.; Perdiguero, Beatriz; Tschopp, Jürg; Pantaleo, Giuseppe; Esteban, Mariano; Calandra, Thierry

    2009-01-01

    Modified vaccinia virus Ankara (MVA) is an attenuated double-stranded DNA poxvirus currently developed as a vaccine vector against HIV/AIDS. Profiling of the innate immune responses induced by MVA is essential for the design of vaccine vectors and for anticipating potential adverse interactions between naturally acquired and vaccine-induced immune responses. Here we report on innate immune sensing of MVA and cytokine responses in human THP-1 cells, primary human macrophages and mouse bone marrow-derived macrophages (BMDMs). The innate immune responses elicited by MVA in human macrophages were characterized by a robust chemokine production and a fairly weak pro-inflammatory cytokine response. Analyses of the cytokine production profile of macrophages isolated from knockout mice deficient in Toll-like receptors (TLRs) or in the adapter molecules MyD88 and TRIF revealed a critical role for TLR2, TLR6 and MyD88 in the production of IFNβ-independent chemokines. MVA induced a marked up-regulation of the expression of RIG-I like receptors (RLR) and the IPS-1 adapter (also known as Cardif, MAVS or VISA). Reduced expression of RIG-I, MDA-5 and IPS-1 by shRNAs indicated that sensing of MVA by RLR and production of IFNβ and IFNβ-dependent chemokines was controlled by the MDA-5 and IPS-1 pathway in the macrophage. Crosstalk between TLR2-MyD88 and the NALP3 inflammasome was essential for expression and processing of IL-1β. Transcription of the Il1b gene was markedly impaired in TLR2−/− and MyD88−/− BMDM, whereas mature and secreted IL-1β was massively reduced in NALP3−/− BMDMs or in human THP-1 macrophages with reduced expression of NALP3, ASC or caspase-1 by shRNAs. Innate immune sensing of MVA and production of chemokines, IFNβ and IL-1β by macrophages is mediated by the TLR2-TLR6-MyD88, MDA-5-IPS-1 and NALP3 inflammasome pathways. Delineation of the host response induced by MVA is critical for improving our understanding of poxvirus antiviral escape

  16. [An imported Chikungunya fever case from New Delhi, India to Ankara, Turkey: the first imported case of Turkey and review of the literature].

    PubMed

    Yağcı Çağlayık, Dilek; Uyar, Yavuz; Korukluoğlu, Gülay; Ertek, Mustafa; Unal, Serhat

    2012-01-01

    Chikungunya virus (CHIKV) is an arthropod-borne alphavirus that causes an acute febrile illness, chikungunya fever. CHIKV virus is geographically distributed in Africa, India, and South-East Asia. Chikungunya fever outbreaks have been reported from India since 2006. The incubation period is 3-7 days, and the disease is characterized by sudden onset of high fever and severe arthralgia. Other symptoms can be rash, headache, fatigue, nausea-vomiting, and myalgias. Here, we report the first Chikungunya case imported from India, New-Delhi to Ankara, Turkey. In December 2010, a 55-year-old female Turkish government employee living in urban area of New Delhi for the last 3 years had sudden onset fever up to 38.4°C for 2 days. Itching rash and arthralgia also developed. Symptomatic treatment was given to patient in New Delhi. She returned to Turkey and was admitted to Hacettepe University Medical Faculty, Department of Internal Medicine, Infectious Diseases Unit, since arthralgia has continued on the 26th day of her complaints. Hepatomegaly and tenosynovitis were detected in her physical examination. Serum sample sent to Refik Saydam National Public Health Agency, Virology Reference and Research Laboratory, yielded negative results for specific IgM and IgG antibodies against Hantavirus and Dengue virus types 1-4; however, the results were positive for CHIKV specific IgM and IgG antibodies by commercial immunofluorescence method (Euroimmun, Germany). CHIKV RNA which was searched by in-house real-time RT-PCR was negative. The second serum sample obtained three weeks later also found positive for CHIKV specific IgM and IgG antibodies. This was the first laboratory confirmed imported Chikungunya case in Turkey. There are predictions regarding the presence of Aedes species mosquitos that can transmit this virus in Turkey. This case report will be an alarming signal for the clinicians in our country to consider Chikungunya fever in the differential diagnosis of patients

  17. River basin management

    SciTech Connect

    Newsome, D.H.; Edwards, A.M.C.

    1984-01-01

    The quality of water is of paramount importance in the management of water resources - including marine waters. A quantitative knowledge of water quality and the factors governing it is required to formulate and implement strategies requiring an inter-disciplinary approach. The overall purpose of this conference was to bring together the latest work on water quality aspects of river basin management. These proceedings are structured on the basis of five themes: problems in international river basins; the contribution of river systems to estuarial and marine pollution; the setting of standards; monitoring; and practical water quality management including use of mathematical models. They are followed by papers from the workshop on advances in the application of mathematical modelling to water quality management, which represent some of the current thinking on the problems and concepts of river basin management.

  18. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. Equipment is staged and a crane will be used to lift up precast concrete poles and position them to be driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the increased weight of the core stage along with ground support and transportation equipment aboard the modified barge Pegasus. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  19. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. Tammy Kelly, in the center, site manager, with Southeast Cherokee Construction Inc. talks with construction workers. A crane will be used to lift up precast concrete poles and position them to be driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the increased weight of the core stage along with ground support and transportation equipment aboard the modified barge Pegasus. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  20. Turn Basin Construction

    NASA Image and Video Library

    2017-06-14

    Modifications are underway at the Launch Complex 39 turn basin wharf at NASA's Kennedy Space Center in Florida to prepare for the arrival of the agency's massive Space Launch System (SLS) core stage aboard the barge Pegasus. In the foreground is Tammy Kelly, site manager, with Southeast Cherokee Construction Inc. A crane will be used to lift up precast concrete poles and position them to be driven to a depth of about 70 feet into the bedrock below the water around the turn basin. The upgrades are necessary to accommodate the increased weight of the core stage along with ground support and transportation equipment aboard the modified barge Pegasus. The Ground Systems Development and Operations Program is overseeing the upgrades to the turn basin wharf.

  1. Delaware River Basin

    USGS Publications Warehouse

    Fischer, Jeffrey M.

    1999-01-01

    Assessing the quality of water in every location of the Nation would not be practical. Therefore, NAWQA investigations are conducted within 59 selected areas called study units (fig. 1). These study units encompass important river and aquifer systems in the United States and represent the diverse geographic, waterresource, land-use, and water-use characteristics of the Nation. The Delaware River Basin is one of 15 study units in which work began in 1996. Water-quality sampling in the study unit will begin in 1999. This fact sheet provides a brief overview of the NAWQA program, describes the Delaware River Basin study unit, identifies the major water-quality issues in the basin, and documents the plan of study that will be followed during the study-unit investigation.

  2. Colby Fire over LA Basin

    Atmospheric Science Data Center

    2014-05-15

    ... NASA Spacecraft Sees Dispersion of Smoke and Ash Across LA Basin from Colby Fire     ... evacuations of about 2,000 people, and sent smoke and ash across the Los Angeles Basin, prompting an air quality alert by public ...

  3. BASINS User Information and Guidance

    EPA Pesticide Factsheets

    This page provides links to guidance on how to use BASINS, including the User’s Manual, tutorials and training, technical notes, case studies, and publications that highlight the use of BASINS in various watershed analyses.

  4. BASINS Climate Assessment Tool Tutorials

    EPA Pesticide Factsheets

    The BASINS Climate Assessment Tool (CAT) provides a flexible set of capabilities for exploring the potential effects of climate change on streamflow and water quality using different watershed models in BASINS.

  5. Turn Basin Construction

    NASA Image and Video Library

    2017-06-30

    Across from the Vehicle Assembly Building at NASA's Kennedy Space Center in Florida, cement is poured as part of a construction project to upgrade the turn basin wharf. The work includes driving multiple precast concrete piles to a depth of about 70 feet to accommodate arrival of the core stage for the agency's Space Launch System (SLS) rocket. When the stage for NASA's SLS departs the Michoud Assembly Facility in New Orleans, it will be shipped by the agency's modified barge to the Launch Complex 39 turn basin.

  6. Turn Basin Construction

    NASA Image and Video Library

    2017-06-30

    Across from the Vehicle Assembly Building at NASA's Kennedy Space Center in Florida, cement trucks stand by to support a construction project to upgrade the turn basin wharf. The work includes driving multiple precast concrete piles to a depth of about 70 feet to accommodate arrival of the core stage for the agency's Space Launch System (SLS) rocket. When the stage for NASA's SLS departs the Michoud Assembly Facility in New Orleans, it will be shipped by the agency's modified barge to the Launch Complex 39 turn basin.

  7. Taunton River basin

    USGS Publications Warehouse

    Williams, John R.; Willey, Richard E.

    1970-01-01

    This report presents in tabular form selected records of wells, test wells, and borings collected during a study of the basin from 1966 to 1968 in cooperation with the Massachusetts Water Resources Commission, and during earlier studies. This report is released in order to make available to the public and to local, state, and federal agencies basic ground-water information that may aid in planning water-resources development. Basic records contained in this report will complement an interpretative report on the Taunton River basin to be released at a later date.

  8. Floor of Hellas Basin

    NASA Image and Video Library

    2002-12-18

    With a diameter of roughly 2,000 km 1,243 miles and a depth of over 7 km more than 4 miles, the Hellas Basin, shown in this image from NASA Mars Odyssey spacecraft, is the largest impact feature on Mars.

  9. America's Caribbean Basin Initiative.

    ERIC Educational Resources Information Center

    Kasten, Robert W.

    1983-01-01

    Nearly all of the countries that have succeeded in their development over the past 30 years have done so on the strength of market-oriented policies and vigorous participation in the international economy. Aid must be complemented by trade and investment. The Caribbean Basin Initiative puts these principles into practice. (RM)

  10. Bransfield Basin and Cordilleran Orogenesis

    NASA Astrophysics Data System (ADS)

    Dalziel, I. W.; Austin, J. A.; Barker, D. H.; Christensen, G. L.

    2003-12-01

    Tectonic uplift of the Andean Cordillera was initiated in the mid-Cretaceous with inversion of a composite marginal basin along 7500 km of the continental margin of South America, from Peru to Tierra del Fuego and the North Scotia Ridge. In the southernmost Andes, from 50-56 degrees S, the quasi-oceanic floor of this basin is preserved in the obducted ophiolitic rocks of the Rocas Verdes (Green Rocks) basin. We suggest that the basin beneath Bransfield Strait, 61-64 degrees S, separating the South Shetland Islands from the Antarctic Peninsula, constitutes a modern analog for the Rocas Verdes basin. Marine geophysical studies of Bransfield basin have been undertaken over the past 12 years by the Institute for Geophysics, University of Texas at Austin, under the auspices of the Ocean Sciences Division and United States Antarctic Program, National Science Foundation. These studies have elucidated the structure and evolution of Bransfield basin for comparison with the Rocas Verdes basin, with a view to eventual forward modeling of the evolution of a hypothetical cordilleran orogen by compression and inversion of the basin. These are the processes that can be observed in the tectonic transformation of the Rocas Verdes basin into the southernmost Andean cordillera, as South America moved rapidly westward in an Atlantic-Indian ocean hot-spot reference frame during the mid-Cretaceous. Multi-channel reflection seismic data from the Bransfield basin reveal an asymmetric structural architecture characterized by steeply-dipping normal faults flanking the South Shetlands island arc and gently dipping listric normal faults along the Antarctic Peninsula margin. Normal fault polarity reversals appear to be related to distributed loci of magmatic activity within the basin. This architecture is remarkably similar to that deduced from field structural studies of the Rocas Verdes basin. Notably, the oceanward-dipping, low angle normal faults along the Antarctic Peninsula margin

  11. Elderly deaths in Ankara, Turkey.

    PubMed

    Akar, Taner; Karapirli, Mustafa; Akcan, Ramazan; Demirel, Birol; Akduman, Barış; Dursun, Ahmet Zahit; Sari, Serhat; Özkök, Alper

    2014-01-01

    According to World Health Organization, the life expectancy at birth is increasing. An increase in life expectancy might result in increased morbidity and mortality in elderly. The increase in the elderly population also leads to an increase in medico-legal problems, as well. Autopsy is of high importance for determination of cause of death in clinical and forensic cases. The purpose of this study was to find out general characteristics elderly deaths by examining forensic autopsy records. Out of 7033 forensic autopsies performed between years of 2007 and 2011, 1324 were elderly deaths and were included in the scope of the study. The records of public prosecutor office, crime scene investigation and autopsy findings were examined. The majority of victims (70.6%) were male, while 29.4% were female, with a male to female ratio of 2.4/1. Victims' ages ranged between 65 and 96 years, and the mean age was 74.8 years. A great number of presented elderly deaths were due to unnatural causes, followed by natural deaths cases. Out of unnatural deaths, 63.2% were related to accidents, 23.7% were suicides, and remaining 13.1% were homicides. More than half (56.6%) of all suicidal deaths were due to hanging. Of natural deaths, the majority (82.7%) were due to cardiovascular system disease. In the presented series the cause of death was determined in 90.9% of all elderly deaths, which validates the need for a forensic autopsy. Data obtained through autopsy procedures is of high importance for death statistics.

  12. Frontier petroleum basins of Colombia

    SciTech Connect

    Keith, J.F. Jr.; Perez, V.E.

    1989-03-01

    The frontier basins of Colombia with hydrocarbon potential are numerous, have varying geological histories, and are in different stages of exploration development. In this paper, sedimentary or structural basins are classified as frontier petroleum basins if commercial discoveries of hydrocarbons are lacking, if the basin has not attained a high degree of exploration development, or if a new play concept has been perceived or developed for a portion of a mature exploration basin. Using these criteria for classification, the authors discuss the Cauca-Patia Choco-Pacifico, and Lower Magdalena basin complexes; the Cordillera Oriental foreland basin; and the Cesar-Rancheria, Sabana, and Amazonas basins. A comprehensive geological and structural setting of each of these frontier basins will be presented. The depositional and tectonic evolution of the basins will be highlighted, and the play concepts for each will be inventoried, catalogued, and categorized as to whether they are theoretical or established. The discussion of the available plays in each of these basins will include the main play concept elements of reservoirs traps, seals, source rocks, maturation, and timing. When detailed data permit, the reservoir and trap geometry will be presented.

  13. Cenozoic basin development in Hispaniola

    SciTech Connect

    Mann, P.; Burke, K.

    1984-04-01

    Four distinct generations of Cenozoic basins have developed in Hispaniola (Haiti and Dominican Republic) as a result of collisional or strike-slip interactions between the North America and Caribbean plates. First generation basins formed when the north-facing Hispaniola arc collided with the Bahama platform in the middle Eocene; because of large post-Eocene vertical movements, these basins are preserved locally in widely separated areas but contain several kilometers of arc and ophiolite-derived clastic marine sediments, probably deposited in thrust-loaded, flexure-type basins. Second generation basins, of which only one is exposed at the surface, formed during west-northwesterly strike-slip displacement of southern Cuba and northern Hispaniola relative to central Hispaniola during the middle to late Oligocene; deposition occurred along a 5-km (3-mi) wide fault-angle depression and consisted of about 2 km (1 mi) of submarine fan deposits. Third generation basins developed during post-Oligocene convergent strike-slip displacement across a restraining bend formed in central Hispaniola; the southern 2 basins are fairly symmetrical, thrust-bounded ramp valleys, and the third is an asymmetrical fault-angle basin. Fourth generation basins are pull-aparts formed during post-Miocene divergent strike-slip motion along a fault zone across southern Hispaniola. As in other Caribbean areas, good source rocks are present in all generations of basins, but suitable reservoir rocks are scarce. Proven reservoirs are late Neogene shallow marine and fluvial sandstones in third generation basins.

  14. Natural frequency of regular basins

    NASA Astrophysics Data System (ADS)

    Tjandra, Sugih S.; Pudjaprasetya, S. R.

    2014-03-01

    Similar to the vibration of a guitar string or an elastic membrane, water waves in an enclosed basin undergo standing oscillatory waves, also known as seiches. The resonant (eigen) periods of seiches are determined by water depth and geometry of the basin. For regular basins, explicit formulas are available. Resonance occurs when the dominant frequency of external force matches the eigen frequency of the basin. In this paper, we implement the conservative finite volume scheme to 2D shallow water equation to simulate resonance in closed basins. Further, we would like to use this scheme and utilizing energy spectra of the recorded signal to extract resonant periods of arbitrary basins. But here we first test the procedure for getting resonant periods of a square closed basin. The numerical resonant periods that we obtain are comparable with those from analytical formulas.

  15. Buried-euxenic-basin model sets Tarim basin potential

    SciTech Connect

    Hsu, K.J. )

    1994-11-28

    The Tarim basin is the largest of the three large sedimentary basins of Northwest China. The North and Southwest depressions of Tarim are underlain by thick sediments and very thin crust. The maximum sediment thickness is more than 15 km. Of the several oil fields of Tarim, the three major fields were discovered during the last decade, on the north flank of the North depression and on the Central Tarim Uplift. The major targets of Tarim, according to the buried-euxenic-basin model, should be upper Paleozoic and lower Mesozoic reservoirs trapping oil and gas condensates from lower Paleozoic source beds. The paper describes the basin and gives a historical perspective of exploration activities and discoveries. It then explains how this basin can be interpreted by the buried-euxenic-basin model. The buried-euxenic-basin model postulates four stages of geologic evolution: (1) Sinian and early Paleozoic platform sedimentation on relic arcs and deep-marine sedimentation in back-arc basins in Xinjiang; (2) Late Paleozoic foreland-basin sedimentation in north Tarim; (3) Mesozoic and Paleogene continental deposition, subsidence under sedimentary load; and (4) Neogene pull-apart basin, wrench faulting and extension.

  16. Canada Basin revealed

    USGS Publications Warehouse

    Mosher, David C.; Shimeld, John; Hutchinson, Deborah R.; Chian, D; Lebedeva-Ivanova, Nina; Jackson, Ruth

    2012-01-01

    More than 15,000 line-km of new regional seismic reflection and refraction data in the western Arctic Ocean provide insights into the tectonic and sedimentologic history of Canada Basin, permitting development of new geologic understanding in one of Earth's last frontiers. These new data support a rotational opening model for southern Canada Basin. There is a central basement ridge possibly representing an extinct spreading center with oceanic crustal velocities and blocky basement morphology characteristic of spreading centre crust surrounding this ridge. Basement elevation is lower in the south, mostly due to sediment loading subsidence. The sedimentary succession is thickest in the southern Beaufort Sea region, reaching more than 15 km, and generally thins to the north and west. In the north, grabens and half-grabens are indicative of extension. Alpha-Mendeleev Ridge is a large igneous province in northern Amerasia Basin, presumably emplaced synchronously with basin formation. It overprints most of northern Canada Basin structure. The seafloor and sedimentary succession of Canada Basin is remarkably flat-lying in its central region, with little bathymetric change over most of its extent. Reflections that correlate over 100s of kms comprise most of the succession and on-lap bathymetric and basement highs. They are interpreted as representing deposits from unconfined turbidity current flows. Sediment distribution patterns reflect changing source directions during the basin’s history. Initially, probably late Cretaceous to Paleocene synrift sediments sourced from the Alaska and Mackenzie-Beaufort margins. This unit shows a progressive series of onlap unconformities with a younging trend towards Alpha and Northwind ridges, likely a response to contemporaneous subsidence. Sediment source direction appeared to shift to the Canadian Arctic Archipelago margin for the Eocene and Oligocene, likely due to uplift of Arctic islands during the Eurekan Orogeny. The final

  17. Deletion of the Vaccinia Virus N2L Gene Encoding an Inhibitor of IRF3 Improves the Immunogenicity of Modified Vaccinia Virus Ankara Expressing HIV-1 Antigens

    PubMed Central

    García-Arriaza, Juan; Gómez, Carmen E.; Sorzano, Carlos Óscar S.

    2014-01-01

    ABSTRACT A modified vaccinia virus Ankara poxvirus vector expressing the HIV-1 Env, Gag, Pol, and Nef antigens from clade B (MVA-B) is currently being tested in clinical trials. To improve its immunogenicity, we have generated and characterized the immune profile of MVA-B containing a deletion of the vaccinia viral gene N2L, which codes for an inhibitor of IRF3 (MVA-B ΔN2L). Deletion of N2L had no effect on virus growth kinetics or on the expression of HIV-1 antigens; hence, the N2 protein is not essential for MVA replication. The innate immune responses triggered by MVA-B ΔN2L revealed an increase in beta interferon, proinflammatory cytokines, and chemokines. Mouse prime-boost protocols showed that MVA-B ΔN2L improves the magnitude and polyfunctionality of HIV-1-specific CD4+ and CD8+ T cell adaptive and memory immune responses, with most of the HIV-1 responses mediated by CD8+ T cells. In the memory phase, HIV-1-specific CD8+ T cells with an effector phenotype were predominant and in a higher percentage with MVA-B ΔN2L than with MVA-B. In both immunization groups, CD4+ and CD8+ T cell responses were directed mainly against Env. Furthermore, MVA-B ΔN2L in the memory phase enhanced levels of antibody against Env. For the vector immune responses, MVA-B ΔN2L induced a greater magnitude and polyfunctionality of VACV-specific CD8+ T memory cells than MVA-B, with an effector phenotype. These results revealed the immunomodulatory role of N2L, whose deletion enhanced the innate immunity and improved the magnitude and quality of HIV-1-specific T cell adaptive and memory immune responses. These findings are relevant for the optimization of poxvirus vectors as vaccines. IMPORTANCE On the basis of the limited efficacy of the RV144 phase III clinical trial, new optimized poxvirus vectors as vaccines against HIV/AIDS are needed. Here we have generated and characterized a new HIV/AIDS vaccine candidate on the basis of the poxvirus MVA vector expressing HIV-1 Env, Gag, Pol

  18. Comparison of lyophilized versus liquid modified vaccinia Ankara (MVA) formulations and subcutaneous versus intradermal routes of administration in healthy vaccinia-naïve subjects.

    PubMed

    Frey, Sharon E; Wald, Anna; Edupuganti, Srilatha; Jackson, Lisa A; Stapleton, Jack T; El Sahly, Hana; El-Kamary, Samer S; Edwards, Kathryn; Keyserling, Harry; Winokur, Patricia; Keitel, Wendy; Hill, Heather; Goll, Johannes B; Anderson, Edwin L; Graham, Irene L; Johnston, Christine; Mulligan, Mark; Rouphael, Nadine; Atmar, Robert; Patel, Shital; Chen, Wilbur; Kotloff, Karen; Creech, C Buddy; Chaplin, Paul; Belshe, Robert B

    2015-09-22

    Modified vaccinia Ankara (MVA) is being developed as a safer smallpox vaccine and is being placed in the US Strategic National Stockpile (SNS) as a liquid formulation for subcutaneous (SC) administration at a dose of 1×10(8) TCID50 in a volume of 0.5mL. This study compared the safety and immunogenicity of the standard formulation, dose and route with both a more stable, lyophilized formulation and with an antigen-sparing intradermal (ID) route of administration. 524 subjects were randomized to receive either a full dose of Lyophilized-SC, a full dose of Liquid-SC or 20% (2×10(7) TCID50 in 0.1mL) of a full dose Liquid-ID MVA on Days 0 and 28. Safety and immunogenicity were followed through 180 days post second vaccination. Among the 3 groups, the proportion of subjects with moderate/severe functional local reactions was significantly different (P=0.0013) between the Lyophilized-SC group (30.3%), the Liquid-SC group (13.8%) and Liquid-ID group (22.0%) only after first vaccination; and for moderate/severe measured erythema and/or induration after any vaccination (P=0.0001) between the Lyophilized-SC group (58.2%), the Liquid-SC group (58.1%) and the Liquid-ID group (94.8%) and the reactions lasted longer in the Liquid-ID group. In the ID Group, 36.1% of subjects had mild injection site skin discoloration lasting ≥6 months. After second vaccination Day (42-208), geometric mean of peak neutralization titers were 87.8, 49.5 and 59.5 for the Lyophilized-SC, Liquid-SC and Liquid-ID groups, respectively, and the maximum number of responders based on peak titer in each group was 142/145 (97.9%), 142/149 (95.3%) and 138/146 (94.5%), respectively. At 180 days after the second vaccination, geometric mean neutralization titers declined to 11.7, 10.2 and 10.4 with only 54.3%, 39.2% and 35.2% of subjects remaining seropositive for the Lyophilized-SC, Liquid-SC and Liquid-ID groups, respectively. Both the Lyophilized-SC and Liquid-ID groups were considered non-inferior (primary

  19. Preferential Targeting of Conserved Gag Regions after Vaccination with a Heterologous DNA Prime-Modified Vaccinia Virus Ankara Boost HIV-1 Vaccine Regimen.

    PubMed

    Bauer, Asli; Podola, Lilli; Mann, Philipp; Missanga, Marco; Haule, Antelmo; Sudi, Lwitiho; Nilsson, Charlotta; Kaluwa, Bahati; Lueer, Cornelia; Mwakatima, Maria; Munseri, Patricia J; Maboko, Leonard; Robb, Merlin L; Tovanabutra, Sodsai; Kijak, Gustavo; Marovich, Mary; McCormack, Sheena; Joseph, Sarah; Lyamuya, Eligius; Wahren, Britta; Sandström, Eric; Biberfeld, Gunnel; Hoelscher, Michael; Bakari, Muhammad; Kroidl, Arne; Geldmacher, Christof

    2017-09-15

    Prime-boost vaccination strategies against HIV-1 often include multiple variants for a given immunogen for better coverage of the extensive viral diversity. To study the immunologic effects of this approach, we characterized breadth, phenotype, function, and specificity of Gag-specific T cells induced by a DNA-prime modified vaccinia virus Ankara (MVA)-boost vaccination strategy, which uses mismatched Gag immunogens in the TamoVac 01 phase IIa trial. Healthy Tanzanian volunteers received three injections of the DNA-SMI vaccine encoding a subtype B and AB-recombinant Gagp37 and two vaccinations with MVA-CMDR encoding subtype A Gagp55 Gag-specific T-cell responses were studied in 42 vaccinees using fresh peripheral blood mononuclear cells. After the first MVA-CMDR boost, vaccine-induced gamma interferon-positive (IFN-γ(+)) Gag-specific T-cell responses were dominated by CD4(+) T cells (P < 0.001 compared to CD8(+) T cells) that coexpressed interleukin-2 (IL-2) (66.4%) and/or tumor necrosis factor alpha (TNF-α) (63.7%). A median of 3 antigenic regions were targeted with a higher-magnitude median response to Gagp24 regions, more conserved between prime and boost, compared to those of regions within Gagp15 (not primed) and Gagp17 (less conserved; P < 0.0001 for both). Four regions within Gagp24 each were targeted by 45% to 74% of vaccinees upon restimulation with DNA-SMI-Gag matched peptides. The response rate to individual antigenic regions correlated with the sequence homology between the MVA- and DNA Gag-encoded immunogens (P = 0.04, r(2) = 0.47). In summary, after the first MVA-CMDR boost, the sequence-mismatched DNA-prime MVA-boost vaccine strategy induced a Gag-specific T-cell response that was dominated by polyfunctional CD4(+) T cells and that targeted multiple antigenic regions within the conserved Gagp24 protein.IMPORTANCE Genetic diversity is a major challenge for the design of vaccines against variable viruses. While including multiple variants for a given

  20. Dimension of fractal basin boundaries

    SciTech Connect

    Park, B.S.

    1988-01-01

    In many dynamical systems, multiple attractors coexist for certain parameter ranges. The set of initial conditions that asymptotically approach each attractor is its basin of attraction. These basins can be intertwined on arbitrary small scales. Basin boundary can be either smooth or fractal. Dynamical systems that have fractal basin boundary show final state sensitivity of the initial conditions. A measure of this sensitivity (uncertainty exponent {alpha}) is related to the dimension of the basin boundary d = D - {alpha}, where D is the dimension of the phase space and d is the dimension of the basin boundary. At metamorphosis values of the parameter, there might happen a conversion from smooth to fractal basin boundary (smooth-fractal metamorphosis) or a conversion from fractal to another fractal basin boundary characteristically different from the previous fractal one (fractal-fractal metamorphosis). The dimension changes continuously with the parameter except at the metamorphosis values where the dimension of the basin boundary jumps discontinuously. We chose the Henon map and the forced damped pendulum to investigate this. Scaling of the basin volumes near the metamorphosis values of the parameter is also being studied for the Henon map. Observations are explained analytically by using low dimensional model map.

  1. ADVANCED CHEMISTRY BASINS MODEL

    SciTech Connect

    William Goddard III; Lawrence Cathles III; Mario Blanco; Paul Manhardt; Peter Meulbroek; Yongchun Tang

    2004-05-01

    The advanced Chemistry Basin Model project has been operative for 48 months. During this period, about half the project tasks are on projected schedule. On average the project is somewhat behind schedule (90%). Unanticipated issues are causing model integration to take longer then scheduled, delaying final debugging and manual development. It is anticipated that a short extension will be required to fulfill all contract obligations.

  2. Albuquerque Basin seismic network

    USGS Publications Warehouse

    Jaksha, Lawrence H.; Locke, Jerry; Thompson, J.B.; Garcia, Alvin

    1977-01-01

    The U.S. Geological Survey has recently completed the installation of a seismic network around the Albuquerque Basin in New Mexico. The network consists of two seismometer arrays, a thirteen-station array monitoring an area of approximately 28,000 km 2 and an eight-element array monitoring the area immediately adjacent to the Albuquerque Seismological Laboratory. This report describes the instrumentation deployed in the network.

  3. Advanced Chemistry Basins Model

    SciTech Connect

    William Goddard; Mario Blanco; Lawrence Cathles; Paul Manhardt; Peter Meulbroek; Yongchun Tang

    2002-11-10

    The DOE-funded Advanced Chemistry Basin model project is intended to develop a public domain, user-friendly basin modeling software under PC or low end workstation environment that predicts hydrocarbon generation, expulsion, migration and chemistry. The main features of the software are that it will: (1) afford users the most flexible way to choose or enter kinetic parameters for different maturity indicators; (2) afford users the most flexible way to choose or enter compositional kinetic parameters to predict hydrocarbon composition (e.g., gas/oil ratio (GOR), wax content, API gravity, etc.) at different kerogen maturities; (3) calculate the chemistry, fluxes and physical properties of all hydrocarbon phases (gas, liquid and solid) along the primary and secondary migration pathways of the basin and predict the location and intensity of phase fractionation, mixing, gas washing, etc.; and (4) predict the location and intensity of de-asphaltene processes. The project has be operative for 36 months, and is on schedule for a successful completion at the end of FY 2003.

  4. All About That Basin

    NASA Image and Video Library

    2015-02-25

    This mosaic of Caloris basin is an enhanced-color composite overlain on a monochrome mosaic featured in a previous post. The color mosaic is made up of WAC images obtained when both the spacecraft and the Sun were overhead, conditions best for discerning variations in albedo, or brightness. The monochrome mosaic is made up of WAC and NAC images obtained at off-vertical Sun angles (i.e., high incidence angles) and with visible shadows so as to reveal clearly the topographic form of geologic features. The combination of the two datasets allows the correlation of geologic features with their color properties. In portions of the scene, color differences from image to image are apparent. Ongoing calibration efforts by the MESSENGER team strive to minimize these differences. Caloris basin has been flooded by lavas that appear orange in this mosaic. Post-flooding craters have excavated material from beneath the surface. The larger of these craters have exposed low-reflectance material (blue in this mosaic) from beneath the surface lavas, likely giving a glimpse of the original basin floor material. Analysis of these craters yields an estimate of the thickness of the volcanic layer: 2.5-3.5 km (1.6-2.2 mi.). http://photojournal.jpl.nasa.gov/catalog/PIA19216

  5. Great Basin Paleontological Bibliography

    USGS Publications Warehouse

    Blodgett, Robert B.; Zhang, Ning; Hofstra, Albert H.; Morrow, Jared R.

    2007-01-01

    Introduction This work was conceived as a derivative product for 'The Metallogeny of the Great Basin' project of the Mineral Resources Program of the U.S. Geological Survey. In the course of preparing a fossil database for the Great Basin that could be accessed from the Internet, it was determined that a comprehensive paleontological bibliography must first be compiled, something that had not previously been done. This bibliography includes published papers and abstracts as well as unpublished theses and dissertations on fossils and stratigraphy in Nevada and adjoining portions of California and Utah. This bibliography is broken into first-order headings by geologic age, secondary headings by taxonomic group, followed by ancillary topics of interest to both paleontologists and stratigraphers; paleoecology, stratigraphy, sedimentary petrology, paleogeography, tectonics, and petroleum potential. References were derived from usage of Georef, consultation with numerous paleontologists and geologists working in the Great Basin, and literature currently on hand with the authors. As this is a Web-accessible bibliography, we hope to periodically update it with new citations or older references that we have missed during this compilation. Hence, the authors would be grateful to receive notice of any new or old papers that the readers think should be added. As a final note, we gratefully acknowledge the helpful reviews provided by A. Elizabeth J. Crafford (Anchorage, Alaska) and William R. Page (USGS, Denver, Colorado).

  6. Induction of Both Local Immune Response in Mice and Protection in a Rabbit Model by Intranasal Immunization with Modified Vaccinia Ankara Virus Expressing a Secreted Form of Bovine Herpesvirus 1 Glycoprotein D.

    PubMed

    Del Medico Zajac, María Paula; Zanetti, Flavia Adriana; Esusy, María Soledad; Federico, Carlos Rodolfo; Zabal, Osvaldo; Valera, Alejandro Rafael; Calamante, Gabriela

    In this study, we evaluated the immunogenicity and efficacy of mucosal delivery of a recombinant modified vaccinia Ankara virus (MVA) expressing the secreted version of bovine herpesvirus type 1 (BoHV-1) glycoprotein D (MVA-gDs) without addition of adjuvant in two animal models. First, we demonstrated the capability of MVA-gDs of inducing both local and systemic anti-gD humoral immune response after intranasal immunization of mice. Then, we confirmed that two doses of MVA-gDs administered intranasally to rabbits induced systemic anti-gD antibodies and conferred protection against BoHV-1 challenge. Our results show the potential of using MVA as a vector for the rational design of veterinary vaccines capable of inducing specific and protective immune responses both at local and systemic level.

  7. Planning and Designing Effective Defence and Related Information Services: Conference Proceedings of the Technical Information Panel Specialists’ Meeting Held in Ankara, Turkey on 10-11 September 1986.

    DTIC Science & Technology

    1987-04-01

    Kavaklidere - Ankara Turkey PANEL EXECUTIVE Mr G.W.Hart AGARD/NATO 7 rue Ancelle 92200 Neuifly sur Seine France iv * a ..- Jb CONTENTS Page THEME iii TECHNICAL...information, cant he outlined as: !,v iOecue- t iot-,mat ion as a sub-sect or in the national planning, ac ,1 . 7 a a. i-cr a vat coval information system...1 1 ,1t. - ~ ~ ~ , , Ia~~l~i It c Atci ,c , IcS.,tt kucU, a- 7 ; o t re "" P, - , et t ,a: c t r tt’ -. 2-1 BENEFITS OF SCIENTIFIC AND TECHNICAL

  8. Caribbean basin framework, 3: Southern Central America and Colombian basin

    SciTech Connect

    Kolarsky, R.A.; Mann, P. )

    1991-03-01

    The authors recognize three basin-forming periods in southern Central America (Panama, Costa Rica, southern Nicaragua) that they attempt to correlate with events in the Colombian basin (Bowland, 1984): (1) Early-Late Cretaceous island arc formation and growth of the Central American island arc and Late Cretaceous formation of the Colombian basin oceanic plateau. During latest Cretaceous time, pelagic carbonate sediments blanketed the Central American island arc in Panama and Costa Rica and elevated blocks on the Colombian basin oceanic plateau; (2) middle Eocene-middle Miocene island arc uplift and erosion. During this interval, influx of distal terrigenous turbidites in most areas of Panama, Costa Rica, and the Colombian basin marks the uplift and erosion of the Central American island arc. In the Colombian basin, turbidites fill in basement relief and accumulate to thicknesses up to 2 km in the deepest part of the basin. In Costa Rica, sedimentation was concentrated in fore-arc (Terraba) and back-arc (El Limon) basins; (3) late Miocene-Recent accelerated uplift and erosion of segments of the Central American arc. Influx of proximal terrigenous turbidites and alluvial fans in most areas of Panama, Costa Rica, and the Colombian basin marks collision of the Panama arc with the South American continent (late Miocene early Pliocene) and collision of the Cocos Ridge with the Costa Rican arc (late Pleistocene). The Cocos Ridge collision inverted the Terraba and El Limon basins. The Panama arc collision produced northeast-striking left-lateral strike-slip faults and fault-related basins throughout Panama as Panama moved northwest over the Colombian basin.

  9. Ophiolite suture in Central Anatolia: New insights from the Sivas Basin (Turkey)

    NASA Astrophysics Data System (ADS)

    Legeay, Etienne; Ringenbach, Jean-Claude; Mohn, Geoffroy; Kergaravat, Charlie; Callot, Jean-Paul

    2015-04-01

    The closure of the Neotethys is classically associated with the obduction of ophiolitic rocks, defining successive suture zones. Theses Alpine-Himalayan ophiolites reflect a complex and still poorly understood paleogeographic framework. In Turkey, various types of ophiolite have been described, involving supra subduction zone and ophiolitic melanges as well. Hence reconstructions of the Anatolian continent assumed the amalgamation of one or more continental fragments during the Mesozoic-Early Cenozoic time. The Sivas Basin is located in a key position at the junction of three crustal domains: the Pontides to the North, the Anatolide - Tauride platforms to the South, and the Central Anatolian Crystalline Complex to the West. These blocks are separated to the North by the Izmir-Ankara-Erzican suture zone (IAESZ), and by the Inner Tauride suture zone (ITSZ) to the South. Ophiolitic outcrops are common in this area, mainly on the basin borders, and sometimes within the central part. These green rocks have been previously related to the ophiolitic melange from the IAESZ in Northern part and to the ITSZ for the southern parts. Recent fieldwork on the southern edge of the Sivas Basin allows a proper description of the ophiolitic complex, including from bottom to top: (1) a large volume of intensely serpentinized peridotites, strongly veined with chrysotile, with minor gabbroic intrusions; (2) upward, serpentinized mantle rocks affected by a cataclastic deformation associated with tectonic breccias and ophicalcites ; and eventually, (3) on the top of the mantle, silicates deposits similar to radiolarian cherts cover by sedimentary breccias with mantle clasts. New geochemical analysis and subsurface data confirm the existence of a southward obducted slice of ophiolite over more than 100km from North to South, forming the basement of the Sivas Basin since the Campanian. This southward obduction related to the IAESZ appears similar to slow spreading ridge or hyper

  10. Seismic exploration in Raton basin

    SciTech Connect

    Applegate, J.K.; Rose, P.R.

    1985-05-01

    Exploration in the Raton basin has delineated complex mountain-front structure in the asymmetric basin, and defined possible basin-centered gas. Exploration has included subsurface and surface geology, remote sensing, and seismic reflection. The Raton basin is a north-south-trending structural basin straddling the Colorado-New Mexico boundary. It is bounded on the west by the Sangre de Cristo Mountains, on the north and northeast by the Wet Mountains and Apishapa arch, and the Sierra Grande uplift on the south and southeast. The basin is asymmetric with transcurrent faulting and thrusting associated with the steeper western flank of the basin. Rocks range from Devonian-Mississippian overlying Precambrian basement to Miocene volcanics associated with the Spanish Peaks. Principal targets include the Entrada, Dakota, Codell, and Trinidad Sandstones and the Purgatoire and Raton Formations. Seismic data include explosive and Vibroseis data. Data quality is good in the basin center and is fair in the thrusted areas. Correlations are difficult from line to line. However, a strike line in the disturbed area would probably be more disrupted by out-of-the-plane reflections than the dip lines would be. Significant stratigraphic changes are seen in both the Trinidad and Dakota intervals. Integrated seismic and geological studies are keys to exploration in the basin. Subsequent work will rely heavily on improved seismic information.

  11. Venezuela Basin crustal structure

    NASA Astrophysics Data System (ADS)

    Diebold, J. B.; Stoffa, P. L.; Buhl, P.; Truchan, M.

    1981-09-01

    Velocity-depth profiles derived from six two-ship expanding spread experiments, in combination with other geophysical data, define the characteristics of two distinct types of Venezuela Basin crust and the boundary between them. Each two-ship common midpoint reflection/refraction profile is automatically transformed into the τ-p plane, `picked' and interpreted to provide V(Z) functions with appropriate confidence bounds. The results, together with gravity, magnetic, and near-vertical incidence reflection data, reveal a 50,000 km2 triangle of Venezuela Basin crust which resembles normal oceanic crust in a magnetic quiet zone. North and west of this triangle lies the previously defined, thick `Caribbean' crust, having two distinct layers above the M discontinuity. Acoustic basement there appears unusually smooth due to extensive basaltic sills and flows which were cored at Deep Sea Drilling Project sites 146/149(sills), and 150 (flows); also, depths to mantle are greater than normal. Interpretations of near-vertical and wide-angle reflection data show that the extra crustal thickness is due not only to the emplacement of the flows but also to the crust below being somewhat thicker than normal. The boundary between the two crustal areas has a NE-SW trend which parallels the dominant structural and magnetic lineations.This boundary coincides in position, though not in trend, with the previously defined `central Venezuela Basin fault zone'. Further study is required to determine whether this boundary is of tectonic origin or if it represents a change in style of crustal production.

  12. Great Basin paleontological database

    USGS Publications Warehouse

    Zhang, N.; Blodgett, R.B.; Hofstra, A.H.

    2008-01-01

    The U.S. Geological Survey has constructed a paleontological database for the Great Basin physiographic province that can be served over the World Wide Web for data entry, queries, displays, and retrievals. It is similar to the web-database solution that we constructed for Alaskan paleontological data (www.alaskafossil.org). The first phase of this effort was to compile a paleontological bibliography for Nevada and portions of adjacent states in the Great Basin that has recently been completed. In addition, we are also compiling paleontological reports (Known as E&R reports) of the U.S. Geological Survey, which are another extensive source of l,egacy data for this region. Initial population of the database benefited from a recently published conodont data set and is otherwise focused on Devonian and Mississippian localities because strata of this age host important sedimentary exhalative (sedex) Au, Zn, and barite resources and enormons Carlin-type An deposits. In addition, these strata are the most important petroleum source rocks in the region, and record the transition from extension to contraction associated with the Antler orogeny, the Alamo meteorite impact, and biotic crises associated with global oceanic anoxic events. The finished product will provide an invaluable tool for future geologic mapping, paleontological research, and mineral resource investigations in the Great Basin, making paleontological data acquired over nearly the past 150 yr readily available over the World Wide Web. A description of the structure of the database and the web interface developed for this effort are provided herein. This database is being used ws a model for a National Paleontological Database (which we am currently developing for the U.S. Geological Survey) as well as for other paleontological databases now being developed in other parts of the globe. ?? 2008 Geological Society of America.

  13. Evolution of sedimentary basins

    SciTech Connect

    Hellinger, S.J.

    1983-03-01

    Simple extensional models that involve stretching by listric faulting in the brittle upper crust and plastic flow in the lower lithosphere have been shown to account for the subsidence history of various sedimentary basins, continental shelves, and the Central graben in the North Sea. In this paper, the authors present a simplified analysis of the two-layer extensional model for the elementary case in which extension is instantaneous, the crust is thinned by a different amount from the subcrustal lithosphere, the effects of radioactivity and dike intrusion are ignored, and local isostatic compensation is assumed at all times. The authors show how the thinning parameters can be obtained from the subsidence data through the use of a simple and powerful method of data analysis. The authors show that conservation of mass during a process of non-uniform extension implies that much greater thicknesses of sediment can be deposited in a young basin than in the case of uniform extension of both crust and subcrustal lithosphere. Further, the authors show that such an extensional process produces significant uplift of the flanks of a graben and that, as a result of erosion of the uplifted areas, the effective area of the basin can be increased as much as 25 to 30%, depending on the rate of erosion, compared to the area that would have been created by a process of uniform extension. Finally, the authors consider the forces of uplift on the flanks in the situation where the crust is treated as a thin elastic plate floating on a fluid upper mantle, the graben is bounded by two major normal faults, and there is subcrustal thinning under the flanks. The authors show that such normal faults produce uplift of the flanks and that this uplift can be significantly increased by the subcrustal thinning.

  14. Hydrocarbon associations in evaporite basins

    SciTech Connect

    Warren, J.

    1988-01-01

    Evaporite deposition today is not representative of the diversity of scale of evaporites of the past. Ancient evaporites were deposited in two main settings: platform wide or basin wide. Platform evaporites were composed of relatively thin stratiform units (usually <5-10 m thick) deposited on either ramps or behind rimmed shelves. Basinal evaporites were deposited as thick bedded units 10s to 100s of m thick, and laid down in 4 main tectonic settings--rift, collision, transform, and intracratonic. Basins could be further subdivided into three main depositional settings: deep basin-shallow water, deep basin-deep water, and shallow basin-shallow water. Thick basinal salts were remobilized into salt structures in all tectonic settings except intracratonic. Salt flow was due to inherent instability and differential loading in tectonically active settings. Hydrocarbon accumulations associated with these various platforms and basins followed a predictable, but not mutually exclusive, pattern related to the classification of evaporite settings presented in this paper. Reservoirs in platform and ramp settings tended to be of two types--depositional and diagenetic--with most of the diagenesis following patterns predicted by the porosity and plumbing established at or soon after evaporite emplacement. Ramp reservoirs were almost always found in Zone Y, while shelf reservoirs were most common in the grainstone shoals associated with rim or island-crest facies, or their dolomitized equivalents. Reservoirs associated with basinal evaporites were also depositional or diagenetic. Depositional reservoirs were almost all related to topography present during deposition of the carbonates in the basin, often immediately preceding or just beginning evaporitic conditions in the basin.

  15. Potentials and limits to basin stability estimation

    NASA Astrophysics Data System (ADS)

    Schultz, Paul; Menck, Peter J.; Heitzig, Jobst; Kurths, Jürgen

    2017-02-01

    Stability assessment methods for dynamical systems have recently been complemented by basin stability and derived measures, i.e. probabilistic statements whether systems remain in a basin of attraction given a distribution of perturbations. Their application requires numerical estimation via Monte Carlo sampling and integration of differential equations. Here, we analyse the applicability of basin stability to systems with basin geometries that are challenging for this numerical method, having fractal basin boundaries and riddled or intermingled basins of attraction. We find that numerical basin stability estimation is still meaningful for fractal boundaries but reaches its limits for riddled basins with holes.

  16. Atlantic marginal basins of Africa

    SciTech Connect

    Moore, G.T.

    1988-02-01

    The over 10,000-km long Atlantic margin of Africa is divisible into thirty basins or segments of the margin that collectively contain over 18.6 x 10/sup 6/ km/sup 3/ of syn-breakup and post-breakup sediments. Twenty of these basins contain a sufficiently thick volume of sediments to be considered prospects. These basins lie, at least partially, within the 200 m isobath. The distribution of source rocks is broad enough to give potential to each of these basins. The sedimentation patterns, tectonics, and timing of events differ from basin to basin and are related directly to the margin's complex history. Two spreading modes exist: rift and transform. Rifting dates from Late Triassic-Early Jurassic in the northwest to Early Cretaceous south of the Niger Delta. A complex transform fault system separated these two margins. Deep-water communication between the two basins became established in the middle Cretaceous. This Mesozoic-Cenozoic cycle of rifting and seafloor spreading has segmented the margin and where observable, basins tend to be bounded by these segments.

  17. New Light on Old Basins

    NASA Astrophysics Data System (ADS)

    Wood, C. A.; Collins, M. J. S.

    2011-03-01

    Great resolution and homogeneity of LRO WAC mosaics and LOLA altimetry suggest that Moscoviense sits in an older basin, explaining its thin crust and mare lavas, Orientale and SPA overlap older basins, and Wilhelms and McCauley were right about Imbrium.

  18. Hydrocarbon associations in evaporite basins

    SciTech Connect

    Warren, J.

    1988-02-01

    Evaporite deposition today is not representative of the diversity or scale of evaporites of the past. Ancient evaporites were deposited in two main settings: platform wide or basin wide. Platform evaporites were composed of relatively thin stratiform units (usually <5-10 m thick) deposited on either ramps or behind rimmed shelves. Basinal evaporites were deposited as thick bedded units 10s to 100s of m thick, and laid down in 4 main tectonic settings - rift, collision, transform, and intracratonic. Basins could be further subdivided into three main depositional settings: deep basin-shallow water, deep basin-deep water, and shallow basin-shallow water. Thick basinal salts were remobilized into salt structures in all tectonic settings except intracratonic. Salt flow was due to inherent instability and differential loading in tectonically active settings. Hydrocarbon accumulations associated with these various platforms and basins followed a predictable, but not mutually exclusive, pattern related to the classification of evaporite settings presented in this paper. Reservoirs in platform and ramp settings tended to be of two types - depositional and diagenetic - with most of the diagenesis following patterns predicted by the porosity and plumbing established at or soon after evaporite emplacement.

  19. Circluation of the Lau Basin

    NASA Astrophysics Data System (ADS)

    Simons, E.

    2016-02-01

    The tropical South Pacific is a highly studied area and its circulation is characterized by large gyres that extend from just north of the Antarctic Circumpolar Current (ACC) to the equator, as well as several Western Boundary Currents (WBCs). The flow, however, is complicated by the extensive island chains and persistent breaks that result along the bounding walls. The largest gyre lies east of the Tonga-Kermadec Ridge, which is the eastern boundary of the Lau Basin. The Lau Basin is a back-arc basin that is situated between the remaining Lau Ridge volcanic arc on the west and the Tofua arc to the east. Since the basin sits on top of a Wadati-Benioff zone, it is seismically active on a regular basis. The basin itself is trapezoidally shaped, stretching from 15S to about 37S and centered around the antimeridian. Though there has been ample research into the geomorphology and the geochemistry of the basin, there has been very little comment on the circulation of the basin and the origin of the waters found within. From ARGO float data, unexploited hydrographic data, established repeat transects, and process model runs this question is being explored. The basic flow pattern in the Lau Basin consists of chaotic, topographically affected flow in the interior and a short northward boundary current along the northern edge of the Lau- Colville Ridge.

  20. Advanced Chemistry Basins Model

    SciTech Connect

    Blanco, Mario; Cathles, Lawrence; Manhardt, Paul; Meulbroek, Peter; Tang, Yongchun

    2003-02-13

    The objective of this project is to: (1) Develop a database of additional and better maturity indicators for paleo-heat flow calibration; (2) Develop maturation models capable of predicting the chemical composition of hydrocarbons produced by a specific kerogen as a function of maturity, heating rate, etc.; assemble a compositional kinetic database of representative kerogens; (3) Develop a 4 phase equation of state-flash model that can define the physical properties (viscosity, density, etc.) of the products of kerogen maturation, and phase transitions that occur along secondary migration pathways; (4) Build a conventional basin model and incorporate new maturity indicators and data bases in a user-friendly way; (5) Develop an algorithm which combines the volume change and viscosities of the compositional maturation model to predict the chemistry of the hydrocarbons that will be expelled from the kerogen to the secondary migration pathways; (6) Develop an algorithm that predicts the flow of hydrocarbons along secondary migration pathways, accounts for mixing of miscible hydrocarbon components along the pathway, and calculates the phase fractionation that will occur as the hydrocarbons move upward down the geothermal and fluid pressure gradients in the basin; and (7) Integrate the above components into a functional model implemented on a PC or low cost workstation.

  1. Upper Illinois River basin

    USGS Publications Warehouse

    Friedel, Michael J.

    1998-01-01

    During the past 25 years, industry and government made large financial investments that resulted in better water quality across the Nation; however, many water-quality concerns remain. Following a 1986 pilot project, the U.S. Geological Survey began implementation of the National Water-Quality Assessment (NAWQA) Program in 1991. This program differs from other national water-quality assessment studies in that the NAWQA integrates monitoring of surface- and ground-water quality with the study of aquatic ecosystems. The goals of the NAWQA Program are to (1) describe current water-quality conditions for a large part of the Nation's freshwater streams and aquifers (water-bearing sediments and rocks), (2) describe how water quality is changing over time, and (3) improve our understanding of the primary natural and human factors affecting water quality.The Upper Illinois River Basin National Water- Quality Assessment (NAWQA) study will increase the scientific understanding of surface- and ground-water quality and the factors that affect water quality in the basin. The study also will provide information needed by water-resource managers to implement effective water-quality management actions and evaluate long-term changes in water quality.

  2. Estancia Basin dynamic water budget.

    SciTech Connect

    Thomas, Richard P.

    2004-09-01

    The Estancia Basin lies about 30 miles to the east of Albuquerque, NM. It is a closed basin in terms of surface water and is somewhat isolated in terms of groundwater. Historically, the primary natural outlet for both surface water and groundwater has been evaporation from the salt lakes in the southeastern portion of the basin. There are no significant watercourses that flow into this basin and groundwater recharge is minimal. During the 20th Century, agriculture grew to become the major user of groundwater in the basin. Significant declines in groundwater levels have accompanied this agricultural use. Domestic and municipal use of the basin groundwater is increasing as Albuquerque population continues to spill eastward into the basin, but this use is projected to be less than 1% of agricultural use well into the 21st Century. This Water Budget model keeps track of the water balance within the basin. The model considers the amount of water entering the basin and leaving the basin. Since there is no significant surface water component within this basin, the balance of water in the groundwater aquifer constitutes the primary component of this balance. Inflow is based on assumptions for recharge made by earlier researchers. Outflow from the basin is the summation of the depletion from all basin water uses. The model user can control future water use within the basin via slider bars that set values for population growth, water system per-capita use, agricultural acreage, and the types of agricultural diversion. The user can also adjust recharge and natural discharge within the limits of uncertainty for those parameters. The model runs for 100 years beginning in 1940 and ending in 2040. During the first 55 years model results can be compared to historical data and estimates of groundwater use. The last 45 years are predictive. The model was calibrated to match to New Mexico Office of State Engineer (NMOSE) estimates of aquifer storage during the historical period by

  3. The deep Ionian Basin revisited

    NASA Astrophysics Data System (ADS)

    Tugend, Julie; Chamot-Rooke, Nicolas; Arsenikos, Stavros; Frizon de Lamotte, Dominique; Blanpied, Christian

    2016-04-01

    The deep Eastern Mediterranean Basins (Ionian and Herodotus) are characterized by thick sedimentary sequences overlying an extremely thinned basement evidenced from different geophysical methods. Yet, the nature of the crust (continental or oceanic) and the timing of the extreme crustal and lithosphere thinning in the different sub-basins remain highly controversial, casting doubts on the tectonic setting related to the formation of this segment of the North Gondwana paleo-margin. We focus on the Ionian Basin located at the western termination of the Eastern Mediterranean with the aim of identifying, characterizing and mapping the deepest sedimentary sequences. We present tentative age correlations relying on calibrations and observations from the surrounding margins and basins (Malta shelf and Escarpment, Cyrenaica margin, Sirte Basin, Apulian Platform). Two-ship deep refraction seismic data (Expanding Spread Profiles from the PASIPHAE cruise) combined with reprocessed reflection data (from the ARCHIMEDE survey) enabled us to present a homogeneous seismic stratigraphy across the basin and to investigate the velocity structure of its basement. Based on our results, and on a review of geological and geophysical observations, we suggest an Upper Triassic-Early Dogger age for the formation of the deep Ionian Basin. The nature of the underlying basement remains uncertain, both highly-thinned continental and slow-spreading type oceanic crust being compatible with the available constraints. The narrow size and relatively short-lived evolution of the Ionian Basin lead us to suggest that it is more likely the remnant of an immature oceanic basin than of a stable oceanic domain. Eventually, upscaling these results at the scale of the Eastern Mediterranean Basins highlights the complex interaction observed between two propagating oceans: The Central Atlantic and Neo-Tethys.

  4. RESERVES IN WESTERN BASINS PART IV: WIND RIVER BASIN

    SciTech Connect

    Robert Caldwell

    1998-04-01

    Vast quantities of natural gas are entrapped within various tight formations in the Rocky Mountain area. This report seeks to quantify what proportion of that resource can be considered recoverable under today's technological and economic conditions and discusses factors controlling recovery. The ultimate goal of this project is to encourage development of tight gas reserves by industry through reducing the technical and economic risks of locating, drilling and completing commercial tight gas wells. This report is the fourth in a series and focuses on the Wind River Basin located in west central Wyoming. The first three reports presented analyses of the tight gas reserves and resources in the Greater Green River Basin (Scotia, 1993), Piceance Basin (Scotia, 1995) and the Uinta Basin (Scotia, 1995). Since each report is a stand-alone document, duplication of language will exist where common aspects are discussed. This study, and the previous three, describe basin-centered gas deposits (Masters, 1979) which contain vast quantities of natural gas entrapped in low permeability (tight), overpressured sandstones occupying a central basin location. Such deposits are generally continuous and are not conventionally trapped by a structural or stratigraphic seal. Rather, the tight character of the reservoirs prevents rapid migration of the gas, and where rates of gas generation exceed rates of escape, an overpressured basin-centered gas deposit results (Spencer, 1987). Since the temperature is a primary controlling factor for the onset and rate of gas generation, these deposits exist in the deeper, central parts of a basin where temperatures generally exceed 200 F and drill depths exceed 8,000 feet. The abbreviation OPT (overpressured tight) is used when referring to sandstone reservoirs that comprise the basin-centered gas deposit. Because the gas resources trapped in this setting are so large, they represent an important source of future gas supply, prompting studies to

  5. Present-day chaotic formations around the Japanese trenches: Comparison to the on land examples from the Shimanto and Miura-Boso, and from the Franciscan, Mineoka and Ankara

    NASA Astrophysics Data System (ADS)

    Ogawa, Yujiro; Kawamura, Kiichiro; Tsunogae, Toshiaki; Mori, Ryota; Chiba, Tae; Sasaki, Tomoyuki

    2010-05-01

    Four different types of chaotic formations were recognized by the submersible observation around the Japanese trenches, including the Nankai and Sagami troughs, Boso triple junction, Japan trench, and Izu-Bonin arc, and each type is summarized and discussed in view of comparison to the on land examples, such as from the Franciscan, Shimanto and Miura-Boso belts in the circum Pacifc margins, and the Ankara. The submarine geologies are present actual examples to give us a critical key to understanding the formation processes and emplacement mechanisms for the so-called mélange bodies, either sedimentary, tectonic or diapiric. Some are made of alternated beds of sandstone and mudstone that show broken or block-in-matrix fashion, in most cases in muddy matrix. These are commonly developed on the trench landward slope toe of the Nankai and Sagami troughs and Boso triple junction area as well as the Japan trench slope. One type is from the landward slope, but another type is from the oceanward slopes. The former type is in places calcareous cemented, probably caused by hydraulic fracturing by high pore pressure along the thrust fault and oxidized methane-made carbonate precipitation. They are seen on the feet of the thrust-dominated slope and to be compared to the so-called sedimentary mélanges due to the gravitational sliding, which occur because of tectonically induced steep slopes. Most of such thrusts are related to large subduction type earthquakes, and await for further critical consideration on to the relation to the asperity problem. Some of large scale gravitational collapses may be related to the seamount or ridge subduction to the trench, both in case of accretionary and non-accretionary type margins, the former is for the examples from the Nankai and Sagami troughs and the Boso triple junction, latter for the Japan trench. In all cases on land and under the sea in the trench landward slope, some calcareous breccias are associated with methane

  6. Isidis Basin Ejecta

    NASA Image and Video Library

    2017-03-02

    This scene is a jumbled mess. There are blocks and smears of many different rocks types that appear to have been dumped into a pile. That's probably about what happened, as ejecta from the Isidis impact basin to the east. This pile of old rocks is an island surrounded by younger lava flows from Syrtis Major. The map is projected here at a scale of 25 centimeters (9.8 inches) per pixel. [The original image scale is 27.4 centimeters (10.8 inches) per pixel (with 1 x 1 binning); objects on the order of 82 centimeters (32.2 inches) across are resolved.] North is up. http://photojournal.jpl.nasa.gov/catalog/PIA21553

  7. K-Basins design guidelines

    SciTech Connect

    Roe, N.R.; Mills, W.C.

    1995-06-01

    The purpose of the design guidelines is to enable SNF and K Basin personnel to complete fuel and sludge removal, and basin water mitigation by providing engineering guidance for equipment design for the fuel basin, facility modifications (upgrades), remote tools, and new processes. It is not intended to be a purchase order reference for vendors. The document identifies materials, methods, and components that work at K Basins; it also Provides design input and a technical review process to facilitate project interfaces with operations in K Basins. This document is intended to compliment other engineering documentation used at K Basins and throughout the Spent Nuclear Fuel Project. Significant provisions, which are incorporated, include portions of the following: General Design Criteria (DOE 1989), Standard Engineering Practices (WHC-CM-6-1), Engineering Practices Guidelines (WHC 1994b), Hanford Plant Standards (DOE-RL 1989), Safety Analysis Manual (WHC-CM-4-46), and Radiological Design Guide (WHC 1994f). Documents (requirements) essential to the engineering design projects at K Basins are referenced in the guidelines.

  8. Reconstructing vanished ocean basins

    NASA Astrophysics Data System (ADS)

    Müller, D.; Sdrolias, M.; Gaina, C.

    2006-05-01

    The large-scale patterns of mantle convection are mainly dependent on the history of subduction. Therefore some of the primary constraints for subduction models are given by of the location of subduction zones through time, and of the convergence vectors and age of subducted lithosphere. This requires the complete reconstruction of ocean floor through time, including the main ocean basins, back-arc basins, and now subducted ocean crust, and tying these kinematic models to geodynamic simulations. We reconstruct paleo- oceans by creating "synthetic plates", the locations and geometry of which is established on the basis of preserved ocean crust (magnetic lineations and fracture zones), geological data, paleogeography, and the rules of plate tectonics. We use a merged moving hotspot (Late Cretaceous-present) and palaeomagnetic/fixed hotspot (Early Cretaceous) reference frame, coupled with reconstructed spreading histories of the Pacific, Phoenix and Farallon plates and the plates involved in the Tethys oceanic domain. Based on this approach we have created a set of global oceanic paleo-isochrons and paleo-oceanic age grids. The grids also provide the first complete global set of paleo-basement depth maps, including now subducted ocean floor, for the last 130 million years based on a depth-age relationship. We show that the mid-Cretaceous sealevel highstand was primarily caused by two main factors: (1) the "supercontinent breakup effect", which resulted in the creation of the mid-Atlantic and Indian Ocean ridges at the expense of subducting old ocean floor in the Tethys and (2) by a changing age-area distribution of Pacific ocean floor through time, resulting from the subduction of the Pacific-Izanagi, Pacific-Phoenix and Pacific-Farallon ridges. These grids provide model constraints for subduction dynamics through time and represent a framework for backtracking biogeographic and sediment data from ocean drilling and for constraining the opening/closing of oceanic

  9. Aleutian basin oceanic crust

    USGS Publications Warehouse

    Christeson, Gail L.; Barth, Ginger A.

    2015-01-01

    We present two-dimensional P-wave velocity structure along two wide-angle ocean bottom seismometer profiles from the Aleutian basin in the Bering Sea. The basement here is commonly considered to be trapped oceanic crust, yet there is a change in orientation of magnetic lineations and gravity features within the basin that might reflect later processes. Line 1 extends ∼225 km from southwest to northeast, while Line 2 extends ∼225 km from northwest to southeast and crosses the observed change in magnetic lineation orientation. Velocities of the sediment layer increase from 2.0 km/s at the seafloor to 3.0–3.4 km/s just above basement, crustal velocities increase from 5.1–5.6 km/s at the top of basement to 7.0–7.1 km/s at the base of the crust, and upper mantle velocities are 8.1–8.2 km/s. Average sediment thickness is 3.8–3.9 km for both profiles. Crustal thickness varies from 6.2 to 9.6 km, with average thickness of 7.2 km on Line 1 and 8.8 km on Line 2. There is no clear change in crustal structure associated with a change in orientation of magnetic lineations and gravity features. The velocity structure is consistent with that of normal or thickened oceanic crust. The observed increase in crustal thickness from west to east is interpreted as reflecting an increase in melt supply during crustal formation.

  10. The Amazon basin in transition.

    PubMed

    Davidson, Eric A; de Araújo, Alessandro C; Artaxo, Paulo; Balch, Jennifer K; Brown, I Foster; C Bustamante, Mercedes M; Coe, Michael T; DeFries, Ruth S; Keller, Michael; Longo, Marcos; Munger, J William; Schroeder, Wilfrid; Soares-Filho, Britaldo S; Souza, Carlos M; Wofsy, Steven C

    2012-01-18

    Agricultural expansion and climate variability have become important agents of disturbance in the Amazon basin. Recent studies have demonstrated considerable resilience of Amazonian forests to moderate annual drought, but they also show that interactions between deforestation, fire and drought potentially lead to losses of carbon storage and changes in regional precipitation patterns and river discharge. Although the basin-wide impacts of land use and drought may not yet surpass the magnitude of natural variability of hydrologic and biogeochemical cycles, there are some signs of a transition to a disturbance-dominated regime. These signs include changing energy and water cycles in the southern and eastern portions of the Amazon basin.

  11. Great Basin Experimental Range: Annotated bibliography

    Treesearch

    E. Durant McArthur; Bryce A. Richardson; Stanley G. Kitchen

    2013-01-01

    This annotated bibliography documents the research that has been conducted on the Great Basin Experimental Range (GBER, also known as the Utah Experiment Station, Great Basin Station, the Great Basin Branch Experiment Station, Great Basin Experimental Center, and other similar name variants) over the 102 years of its existence. Entries were drawn from the original...

  12. Basin development and petroleum potential of offshore Otway basin, Australia

    SciTech Connect

    Williamson, P.E.; O'Brien, G.W.; Swift, M.G.; Scherl, A.S.; Marlow, M.S.; Exon, N.F.; Falvey, D.A.; Lock, J.; Lockwood, K.

    1987-05-01

    The Bass Strait region in southeastern Australia contains three sedimentary basins, which are, from east to west, the Gippsland, Bass, and Otway basins. The offshore Gippsland basin is Australia's most prolific petroleum-producing province and supplies over 90% of the country's production. In contrast, exploration has been unsuccessful in the offshore portion of the Otway basin; 17 wells have been drilled, and although shows of oil and gas have been common, no commercial discoveries have been made. Many of these wells, drilled in the 1960s and 1970s, were sited using poor-quality seismic data and, as a consequence, were frequently off structure. Seismic data quality has, however, improved significantly in recent years. The present study by the Australian Bureau of Mineral Resources (BMR) involved the collection, in the offshore Otway basin, of 3700 km of high-quality, 48-channel seismic reflection data by the BMR research vessel R/V Rig Seismic. These data have been integrated with existing industry seismic data, well data, limited dredged material, and geohistory analyses in a framework study of basin development and hydrocarbon potential in this under-explored area. The offshore Otway basin extends 500 km along the southern coastline and is typically 50 km wide in water depths of less than 200 m. It contains up to 10 km of predominantly late Mesozoic to early Cenozoic sediments, which are overlain by a thin sequence of middle to late Tertiary shelf carbonates. It has been divided into three main structural elements: the Mussel Platform in the east, the central Voluta Trough, and the Crayfish Platform in the west. The basin was initiated at the end of the Jurassic as part of the Bassian rift. Up to 6 km of Lower Cretaceous sediments were deposited prior to breakup at the end of the Early Cretaceous and the onset of sea-floor spreading between Australia and Antarctica.

  13. Geologic Basin Boundaries (Basins_GHGRP) GIS Layer

    EPA Pesticide Factsheets

    This is a coverage shapefile of geologic basin boundaries which are used by EPA's Greenhouse Gas Reporting Program. For onshore production, the facility includes all emissions associated with wells owned or operated by a single company in a specific hydrocarbon producing basin (as defined by the geologic provinces published by the American Association of Petroleum Geologists). This layer is limited to the contiguous United States.

  14. Tectonic framework of Turkish sedimentary basins

    SciTech Connect

    Yilmaz, P.O. )

    1988-08-01

    Turkey's exploration potential primarily exists in seven onshore (Southeast Turkey platform, Tauride platform, Pontide platform, East Anatolian platform, Interior, Trace, and Adana) basins and four offshore (Black Sea, Marmara Sea, Aegean Sea, and Mediterranean Sea) regional basins formed during the Mesozoic and Tertiary. The Mesozoic basins are the onshore basins: Southeast Turkey, Tauride, Pontide, East Anatolian, and Interior basins. Due to their common tectonic heritage, the southeast Turkey and Tauride basins have similar source rocks, structural growth, trap size, and structural styles. In the north, another Mesozoic basin, the Pontide platform, has a much more complex history and very little in common with the southerly basins. The Pontide has two distinct parts; the west has Paleozoic continental basement and the east is underlain by island-arc basement of Jurassic age. The plays are in the upper Mesozoic rocks in the west Pontide. The remaining Mesozoic basins of the onshore Interior and East Anatolian basins are poorly known and very complex. Their source, reservoir, and seal are not clearly defined. The basins formed during several orogenic phases in mesozoic and Tertiary. The Cenozoic basins are the onshore Thrace and Adana basins, and all offshore regional basins formed during Miocene extension. Further complicating the onshore basins evolution is the superposition of Cenozoic basins and Mesozoic basins. The Thrace basin in the northwest and Adana basin in the south both originate from Tertiary extension over Tethyan basement and result in a similar source, reservoir, and seal. Local strike-slip movement along the North Anatolian fault modifies the Thrace basin structures, influencing its hydrocarbon potential.

  15. Gravity Anomaly Intersects Moon Basin

    NASA Image and Video Library

    2012-12-05

    A linear gravity anomaly intersecting the Crisium basin on the nearside of the moon has been revealed by NASA GRAIL mission. The GRAIL gravity gradient data are shown at left, with the location of the anomaly indicated.

  16. Large Double-ringed Basin

    NASA Image and Video Library

    2000-08-05

    Taken about 40 minutes before NASA Mariner 10 made its close approach to Mercury on Sept. 21,1974, this picture shows a large double-ringed basin center of picture located in the planet south polar region

  17. Andean Altiplano, Amazon Basin burning

    NASA Technical Reports Server (NTRS)

    1991-01-01

    This view is centered over Lake Poopo, Bolivia, in the central Andean Altiplano, (20.0S, 65.0W) with a view looking northeast into the lower elevations of Bolivia and Brazil. Extensive dry seasonal burning in the Amazon Basin produces a thick haze which is trapped in the lower atmosphere by a stable air layer. The clarity difference in the scene is caused by the Andes Mountains extending above the haze into cleaner upper atmosphere air. Amazon Basin burning

  18. COMPUTATIONAL METHODS FOR ASYNCHRONOUS BASINS

    PubMed Central

    Dinwoodie, Ian H

    2016-01-01

    For a Boolean network we consider asynchronous updates and define the exclusive asynchronous basin of attraction for any steady state or cyclic attractor. An algorithm based on commutative algebra is presented to compute the exclusive basin. Finally its use for targeting desirable attractors by selective intervention on network nodes is illustrated with two examples, one cell signalling network and one sensor network measuring human mobility. PMID:28154501

  19. Petrogenesis and geodynamics of plagiogranites from Central Turkey (Ekecikdağ/Aksaray): new geochemical and isotopic data for generation in an arc basin system within the northern branch of Neotethys

    NASA Astrophysics Data System (ADS)

    Köksal, Serhat; Toksoy-Köksal, Fatma; Göncüoglu, M. Cemal

    2017-06-01

    In the Late Cretaceous, throughout the closure of the Neotethys Ocean, ophiolitic rocks from the İzmir-Ankara-Erzincan ocean branch were overthrusted the northern margin of the Tauride-Anatolide Platform. The ophiolitic rocks in the Ekecikdağ (Aksaray/Central Turkey) region typify the oceanic crust of the İzmir-Ankara-Erzincan branch of Neotethys. The gabbros in the area are cut by copious plagiogranite dykes, and both rock units are intruded by mafic dykes. The plagiogranites are leucocratic, fine- to medium-grained calc-alkaline rocks characterized mainly by plagioclase and quartz, with minor amounts of biotite, hornblende and clinopyroxene, and accessory phases of zircon, titanite, apatite and opaque minerals. They are tonalite and trondhjemite in composition with high SiO2 (69.9-75.9 wt%) and exceptionally low K2O (<0.5 wt%) contents. The plagiogranites in common with gabbros and mafic dykes show high large-ion lithophile elements/high-field strength element ratios with depletion in Nb, Ti and light rare-earth elements with respect to N-MORB. The plagiogranites together with gabbros and mafic dykes show low initial 87Sr/86Sr ratios (0.70419-0.70647), high ƐNd( T) (6.0-7.5) values with 206Pb/204Pb (18.199-18.581), 207Pb/204Pb (15.571-15.639) and 208Pb/204Pb (38.292-38.605) ratios indicating a depleted mantle source modified with a subduction component. They show similar isotopic characteristics to the other supra-subduction zone (SSZ) ophiolites in the Eastern Mediterranean to East Anatolian-Lesser Caucasus and Iran regions. It is suggested that the Ekecikdağ plagiogranite was generated in a short time interval from a depleted mantle source in a SSZ/fore-arc basin setting, and its nature was further modified by a subduction component during intra-oceanic subduction.

  20. Petrogenesis and geodynamics of plagiogranites from Central Turkey (Ekecikdağ/Aksaray): new geochemical and isotopic data for generation in an arc basin system within the northern branch of Neotethys

    NASA Astrophysics Data System (ADS)

    Köksal, Serhat; Toksoy-Köksal, Fatma; Göncüoglu, M. Cemal

    2016-09-01

    In the Late Cretaceous, throughout the closure of the Neotethys Ocean, ophiolitic rocks from the İzmir-Ankara-Erzincan ocean branch were overthrusted the northern margin of the Tauride-Anatolide Platform. The ophiolitic rocks in the Ekecikdaǧ (Aksaray/Central Turkey) region typify the oceanic crust of the İzmir-Ankara-Erzincan branch of Neotethys. The gabbros in the area are cut by copious plagiogranite dykes, and both rock units are intruded by mafic dykes. The plagiogranites are leucocratic, fine- to medium-grained calc-alkaline rocks characterized mainly by plagioclase and quartz, with minor amounts of biotite, hornblende and clinopyroxene, and accessory phases of zircon, titanite, apatite and opaque minerals. They are tonalite and trondhjemite in composition with high SiO2 (69.9-75.9 wt%) and exceptionally low K2O (<0.5 wt%) contents. The plagiogranites in common with gabbros and mafic dykes show high large-ion lithophile elements/high-field strength element ratios with depletion in Nb, Ti and light rare-earth elements with respect to N-MORB. The plagiogranites together with gabbros and mafic dykes show low initial 87Sr/86Sr ratios (0.70419-0.70647), high ƐNd(T) (6.0-7.5) values with 206Pb/204Pb (18.199-18.581), 207Pb/204Pb (15.571-15.639) and 208Pb/204Pb (38.292-38.605) ratios indicating a depleted mantle source modified with a subduction component. They show similar isotopic characteristics to the other supra-subduction zone (SSZ) ophiolites in the Eastern Mediterranean to East Anatolian-Lesser Caucasus and Iran regions. It is suggested that the Ekecikdaǧ plagiogranite was generated in a short time interval from a depleted mantle source in a SSZ/fore-arc basin setting, and its nature was further modified by a subduction component during intra-oceanic subduction.

  1. Provenance and basin evolution, Zhada basin, southwestern Tibet

    NASA Astrophysics Data System (ADS)

    Saylor, J.; Decelles, P.; Gehrels, G.; Kapp, P.

    2007-12-01

    The Zhada basin is a late Miocene - Pliocene intermontane basin situated at high elevations in the Himalayan hinterland. The fluvial and lacustrine sediments of the Zhada formation are undeformed and sit in angular unconformity above the deformed Tethyan Sedimentary Sequence (TSS). The basin sits just south of the Indus suture in a structural position occupied elsewhere in the Himalayan orogen by some of the highest mountains on earth, including Everest. The occurrence of a basin at this location demands explanation. Currently, the Sutlej River flows parallel to the structural grain of the Himalaya, westward through the basin, towards the Leo Pargil (Qusum) range. Near the range front it takes a sharp southward turn, cuts across the structural grain of the Himalaya and out into the Gangetic foreland. Palaeocurrent indicators in the lower part of the Zhada formation show that the basin originated as a northwest flowing axial river. Palaeocurrent indicators are consistently northwest oriented, even to within to within 10 km of the Leo Pargil range front in the north-western end of the basin. This implies that at the onset of sedimentation in Zhada basin the Leo Pargil range was not a barrier as it is today. In the upper part of the Zhada formation, palaeocurrent indicators are generally directed towards the centre of the basin. In the central and southern portions of the basin this indicates a transition from an axial, northwest flowing river to prograding fluvial and alluvial fans. However, in the north-western part of the basin the change between lower and upper Zhada formation involves a complete drainage reversal. This change in palaeocurrent orientation is also reflected in the detrital zircon signal from basin sediments. Low in the Zhada formation the detrital zircon signal is dominated by zircons from the Kailash (Gangdese) batholith (or associated extrusives, see below). However, higher in the sections, a local source, either from the TSS or the core of the

  2. Deformation History of the Haymana Basin: Structural Records of Closure-Collision and Subsequent Convergence (Indentation) Events at the North-Central Neotethys (Central Anatolia, Turkey)

    NASA Astrophysics Data System (ADS)

    Gülyüz, Erhan; Özkaptan, Murat; Kaymakcı, Nuretdin

    2016-04-01

    Gondwana- (Tauride Platfrom and Kırşehir Block) and Eurasia (Pontides) - derived continental blocks bound the Haymana basin, in the south and north, respectively. Boundaries between these blocks are signed by İzmir-Ankara-Erzincan and debatable Intra-Tauride Suture zones which are straddled by the Haymana Basin in the region. In this regard, deformation recorded in the upper Cretaceous to middle Eocene deposits of the basin is mainly controlled by the relative movements of these blocks. Therefore, understanding the structural evolution of the Haymana Basin in a spatio-temporal concept is crucial to shed some light on some debatable issues such as ; (1) timing of late stage subduction histories of various branches of Neotethys and subsequent collision events, (2) effects of post-collisional tectonic activity in the Haymana region. Fault kinematic analyses (based on 623 fault-slip data from 73 stations) indicate that the basin was subjected to initially N-S to NNE-SSW extension until middle Paleocene and then N-S- to NNE-SSW- directed continuous compression and coeval E-W to ESE-WNW extension up to middle Miocene. These different deformation phases correspond to the fore-arc (closure) and foreland (collision and further convergence) stages of the basin. Additionally, fold analyses (based on 1017 bedding attitudes) and structural mapping studies show that development of folds and major faults are coeval and they can be explained by principle stress orientations of the second deformation phase. The Haymana basin is, based on the trends of E-W- and WNW-ESE- directed structures at the south-eastern and the north-western parts of the basin, respectively, divided into two structural segments. The balanced cross-sections also indicate ~4% and ~25% shortening at the north-western and south-eastern segments, respectively. The differences in amounts of shortenings are explained by reduce in effectiveness zone of basin-bounding thrust faults towards west. On the other hand

  3. A single immunization with modified vaccinia virus Ankara-based influenza virus H7 vaccine affords protection in the influenza A(H7N9) pneumonia ferret model.

    PubMed

    Kreijtz, Joost H C M; Wiersma, Lidewij C M; De Gruyter, Heidi L M; Vogelzang-van Trierum, Stella E; van Amerongen, Geert; Stittelaar, Koert J; Fouchier, Ron A M; Osterhaus, Albert D M E; Sutter, Gerd; Rimmelzwaan, Guus F

    2015-03-01

    Since the first reports in early 2013, >440 human cases of infection with avian influenza A(H7N9) have been reported including 122 fatalities. After the isolation of the first A(H7N9) viruses, the nucleotide sequences became publically available. Based on the coding sequence of the influenza virus A/Shanghai/2/2013 hemagglutinin gene, a codon-optimized gene was synthesized and cloned into a recombinant modified vaccinia virus Ankara (MVA). This MVA-H7-Sh2 viral vector was used to immunize ferrets and proved to be immunogenic, even after a single immunization. Subsequently, ferrets were challenged with influenza virus A/Anhui/1/2013 via the intratracheal route. Unprotected animals that were mock vaccinated or received empty vector developed interstitial pneumonia characterized by a marked alveolitis, accompanied by loss of appetite, weight loss, and heavy breathing. In contrast, animals vaccinated with MVA-H7-Sh2 were protected from severe disease.

  4. Development of a novel, guinea pig-specific IFN-γ ELISPOT assay and characterization of guinea pig cytomegalovirus GP83-specific cellular immune responses following immunization with a modified vaccinia virus Ankara (MVA)-vectored GP83 vaccine.

    PubMed

    Gillis, Peter A; Hernandez-Alvarado, Nelmary; Gnanandarajah, Josephine S; Wussow, Felix; Diamond, Don J; Schleiss, Mark R

    2014-06-30

    The guinea pig (Cavia porcellus) provides a useful animal model for studying the pathogenesis of many infectious diseases, and for preclinical evaluation of vaccines. However, guinea pig models are limited by the lack of immunological reagents required for characterization and quantification of antigen-specific T cell responses. To address this deficiency, an enzyme-linked immunospot (ELISPOT) assay for guinea pig interferon (IFN)-γ was developed to measure antigen/epitope-specific T cell responses to guinea pig cytomegalovirus (GPCMV) vaccines. Using splenocytes harvested from animals vaccinated with a modified vaccinia virus Ankara (MVA) vector encoding the GPCMV GP83 (homolog of human CMV pp65 [gpUL83]) protein, we were able to enumerate and map antigen-specific responses, both in vaccinated as well as GPCMV-infected animals, using a panel of GP83-specific peptides. Several potential immunodominant GP83-specific peptides were identified, including one epitope, LGIVHFFDN, that was noted in all guinea pigs that had a detectable CD8+ response to GP83. Development of a guinea pig IFN-γ ELISPOT should be useful in characterization of additional T cell-specific responses to GPCMV, as well as other pathogens. This information in turn can help focus future experimental evaluation of immunization strategies, both for GPCMV as well as for other vaccine-preventable illnesses studied in the guinea pig model.

  5. Development of a novel, guinea pig-specific IFN-γ ELISPOT assay and characterization of guinea pig cytomegalovirus GP83-specific cellular immune responses following immunization with a modified vaccinia virus Ankara (MVA)-vectored GP83 vaccine

    PubMed Central

    Gillis, Peter A.; Hernandez-Alvarado, Nelmary; Gnanandarajah, Josephine S.; Wussow, Felix; Diamond, Don J.; Schleiss, Mark R.

    2014-01-01

    The guinea pig (Cavia porcellus) provides a useful animal model for studying the pathogenesis of many infectious diseases, and for preclinical evaluation of vaccines. However, guinea pig models are limited by the lack of immunological reagents required for characterization and quantification of antigen-specific T cell responses. To address this deficiency, an enzyme-linked immunospot (ELISPOT) assay for guinea pig interferon (IFN)-γ was developed to measure antigen/epitope-specific T cell responses to guinea pig cytomegalovirus (GPCMV) vaccines. Using splenocytes harvested from animals vaccinated with a modified vaccinia virus Ankara (MVA) vector encoding the GPCMV GP83 (homolog of human CMV pp65 [gpUL83]) protein, we were able to enumerate and map antigen-specific responses, both in vaccinated as well as GPCMV-infected animals, using a panel of GP83-specific peptides. Several potential immunodominant GP83-specific peptides were identified, including one epitope, LGIVHFFDN, that was noted in all guinea pigs that had a detectable CD8+ response to GP83. Development of a guinea pig IFN-γ ELISPOT should be useful in characterization of additional T cell-specific responses to GPCMV, as well as other pathogens. This information in turn can help focus future experimental evaluation of immunization strategies, both for GPCMV as well as for other vaccine-preventable illnesses studied in the guinea pig model. PMID:24856783

  6. Vaccination of mice with a modified Vaccinia Ankara (MVA) virus expressing the African horse sickness virus (AHSV) capsid protein VP2 induces virus neutralising antibodies that confer protection against AHSV upon passive immunisation.

    PubMed

    Calvo-Pinilla, Eva; de la Poza, Francisco; Gubbins, Simon; Mertens, Peter Paul Clement; Ortego, Javier; Castillo-Olivares, Javier

    2014-02-13

    In previous studies we showed that a recombinant Modified Vaccinia Ankara (MVA) virus expressing the protein VP2 of AHSV serotype 4 (MVA-VP2) induced virus neutralising antibodies in horses and protected interferon alpha receptor gene knock-out mice (IFNAR-/-) against challenge. We continued these studies and determined, in the IFNAR-/- mouse model, whether the antibody responses induced by MVA-VP2 vaccination play a key role in protection against AHSV. Thus, groups of mice were vaccinated with wild type MVA (MVA-wt) or MVA-VP2 and the antisera from these mice were used in a passive immunisation experiment. Donor antisera from (a) MVA-wt; (b) MVA-VP2 vaccinated; or (c) MVA-VP2 vaccinated and AHSV infected mice, were transferred to AHSV non-immune recipient mice. The recipients were challenged with virulent AHSV together with MVA-VP2 vaccinated and MVA-wt vaccinated control animals and the levels of protection against AHSV-4 were compared between all these groups. The results showed that following AHSV challenge, mice that were passively immunised with MVA-VP2 vaccinated antisera were highly protected against AHSV disease and had lower levels of viraemia than recipients of MVA-wt antisera. Our study indicates that MVA-VP2 vaccination induces a highly protective humoral immune response against AHSV.

  7. DNA and Modified Vaccinia Virus Ankara Vaccines Encoding Multiple Cytotoxic and Helper T-Lymphocyte Epitopes of Human Immunodeficiency Virus Type 1 (HIV-1) Are Safe but Weakly Immunogenic in HIV-1-Uninfected, Vaccinia Virus-Naive Adults

    PubMed Central

    Newman, Mark J.; deCamp, Allan; Hay, Christine Mhorag; De Rosa, Stephen C.; Noonan, Elizabeth; Livingston, Brian D.; Fuchs, Jonathan D.; Kalams, Spyros A.; Cassis-Ghavami, Farah L.

    2012-01-01

    We evaluated a DNA plasmid-vectored vaccine and a recombinant modified vaccinia virus Ankara vaccine (MVA-mBN32), each encoding cytotoxic and helper T-lymphocyte epitopes of human immunodeficiency virus type 1 (HIV-1) in a randomized, double-blinded, placebo-controlled trial in 36 HIV-1-uninfected adults using a heterologous prime-boost schedule. HIV-1-specific cellular immune responses, measured as interleukin-2 and/or gamma interferon production, were induced in 1 (4%) of 28 subjects after the first MVA-mBN32 immunization and in 3 (12%) of 25 subjects after the second MVA-mBN32 immunization. Among these responders, polyfunctional T-cell responses, including the production of tumor necrosis factor alpha and perforin, were detected. Vaccinia virus-specific antibodies were induced to the MVA vector in 27 (93%) of 29 and 26 (93%) of 28 subjects after the first and second immunizations with MVA-mBN32. These peptide-based vaccines were safe but were ineffective at inducing HIV-1-specific immune responses and induced much weaker responses than MVA vaccines expressing the entire open reading frames of HIV-1 proteins. PMID:22398243

  8. DNA and modified vaccinia virus Ankara vaccines encoding multiple cytotoxic and helper T-lymphocyte epitopes of human immunodeficiency virus type 1 (HIV-1) are safe but weakly immunogenic in HIV-1-uninfected, vaccinia virus-naive adults.

    PubMed

    Gorse, Geoffrey J; Newman, Mark J; deCamp, Allan; Hay, Christine Mhorag; De Rosa, Stephen C; Noonan, Elizabeth; Livingston, Brian D; Fuchs, Jonathan D; Kalams, Spyros A; Cassis-Ghavami, Farah L

    2012-05-01

    We evaluated a DNA plasmid-vectored vaccine and a recombinant modified vaccinia virus Ankara vaccine (MVA-mBN32), each encoding cytotoxic and helper T-lymphocyte epitopes of human immunodeficiency virus type 1 (HIV-1) in a randomized, double-blinded, placebo-controlled trial in 36 HIV-1-uninfected adults using a heterologous prime-boost schedule. HIV-1-specific cellular immune responses, measured as interleukin-2 and/or gamma interferon production, were induced in 1 (4%) of 28 subjects after the first MVA-mBN32 immunization and in 3 (12%) of 25 subjects after the second MVA-mBN32 immunization. Among these responders, polyfunctional T-cell responses, including the production of tumor necrosis factor alpha and perforin, were detected. Vaccinia virus-specific antibodies were induced to the MVA vector in 27 (93%) of 29 and 26 (93%) of 28 subjects after the first and second immunizations with MVA-mBN32. These peptide-based vaccines were safe but were ineffective at inducing HIV-1-specific immune responses and induced much weaker responses than MVA vaccines expressing the entire open reading frames of HIV-1 proteins.

  9. Modified vaccinia virus Ankara can activate NF-kappaB transcription factors through a double-stranded RNA-activated protein kinase (PKR)-dependent pathway during the early phase of virus replication.

    PubMed

    Lynch, Heather E; Ray, Caroline A; Oie, Katrina L; Pollara, Justin J; Petty, Ian T D; Sadler, Anthony J; Williams, Bryan R G; Pickup, David J

    2009-09-01

    Modified vaccinia virus Ankara (MVA), which is a promising replication-defective vaccine vector, is unusual among the orthopoxviruses in activating NF-kappaB transcription factors in cells of several types. In human embryonic kidney (HEK 293T) cells, the MVA-induced depletion of IkappaBalpha required to activate NF-kappaB is inhibited by UV-inactivation of the virus, and begins before viral DNA replication. In HEK 293T, CHO, or RK13 cells, expression of the cowpox virus CP77 early gene, or the vaccinia virus K1L early gene suppresses MVA-induced IkappaBalpha depletion. In mouse embryonic fibroblasts (MEFs), MVA induction of IkappaBalpha depletion is dependent on the expression of mouse or human double-stranded RNA-activated protein kinase (PKR). These results demonstrate that events during the early phase of MVA replication can induce PKR-mediated processes contributing both to the activation of NF-kappaB signaling, and to processes that may restrict viral replication. This property may contribute to the efficacy of this vaccine virus.

  10. Different Patterns of Immune Responses but Similar Control of a Simian-Human Immunodeficiency Virus 89.6P Mucosal Challenge by Modified Vaccinia Virus Ankara (MVA) and DNA/MVA Vaccines

    PubMed Central

    Amara, Rama Rao; Villinger, Francois; Staprans, Silvija I.; Altman, John D.; Montefiori, David C.; Kozyr, Natalia L.; Xu, Yan; Wyatt, Linda S.; Earl, Patricia L.; Herndon, James G.; McClure, Harold M.; Moss, Bernard; Robinson, Harriet L.

    2002-01-01

    Recently we demonstrated the control of a mucosal challenge with a pathogenic chimera of simian and human immunodeficiency virus (SHIV-89.6P) by priming with a Gag-Pol-Env-expressing DNA and boosting with a Gag-Pol-Env-expressing recombinant modified vaccinia virus Ankara (DNA/MVA) vaccine. Here we evaluate the ability of the MVA component of this vaccine to serve as both a prime and a boost for an AIDS vaccine. The same immunization schedule, MVA dose, and challenge conditions were used as in the prior DNA/MVA vaccine trial. Compared to the DNA/MVA vaccine, the MVA-only vaccine raised less than 1/10 the number of vaccine-specific T cells but 10-fold-higher titers of binding antibody for Env. Postchallenge, the animals vaccinated with MVA alone increased their CD8 cell numbers to levels that were similar to those seen in DNA/MVA-vaccinated animals. However, they underwent a slower emergence and contraction of antiviral CD8 T cells and were slower to generate neutralizing antibodies than the DNA/MVA-vaccinated animals. Despite this, by 5 weeks postchallenge, the MVA-only-vaccinated animals had achieved as good control of the viral infection as the DNA/MVA group, a situation that has held up to the present time in the trial (48 weeks postchallenge). Thus, MVA vaccines, as well as DNA/MVA vaccines, merit further evaluation for their ability to control the current AIDS pandemic. PMID:12097576

  11. Design and simulation of 3½-cell superconducting gun cavity and beam dynamics studies of the SASE-FEL System at the Institute of Accelerator Technologies at Ankara University

    NASA Astrophysics Data System (ADS)

    Yildiz, H. Duran; Cakir, R.; Porsuk, D.

    2015-06-01

    Design and simulation of a superconducting gun cavity with 3½ cells have been studied in order to give the first push to the electron beam for the linear accelerating system at The Institute of Accelerator Technologies at Ankara University. Electrons are accelerated through the gun cavity with the help of the Radiofrequency power suppliers from cryogenic systems. Accelerating gradient should be as high as possible to accelerate electron beam inside the cavity. In this study, electron beam reaches to 9.17 MeV energy at the end of the gun cavity with the accelerating gradient; Ec=19.21 MV/m. 1.3 GHz gun cavity consists of three TESLA-like shaped cells while the special designed gun-cell includes a cathode plug. Optimized important beam parameters inside the gun cavity, average beam current 3 mA, transverse emittance 2.5 mm mrad, repetition rate 30 MHz and other parameters are obtained for the SASE-FEL System. The Superfish/Poisson program is used to design each cell of the superconducting cavity. Superconducting gun cavity and Radiofrequency properties are studied by utilizing 2D Superfish/Poisson, 3D Computer Simulation Technology Microwave Studio, and 3D Computer Simulation Technology Particle Studio. Superfish/Poisson is also used to optimize the geometry of the cavity cells to get the highest accelerating gradient. The behavior of the particles along the beamline is included in this study. ASTRA Code is used to track the particles.

  12. Bright Basin on Tethys

    NASA Image and Video Library

    2015-07-27

    With the expanded range of colors visible to Cassini's cameras, differences in materials and their textures become apparent that are subtle or unseen in natural color views. Here, the giant impact basin Odysseus on Saturn's moon Tethys stands out brightly from the rest of the illuminated icy crescent. This distinct coloration may result from differences in either the composition or structure of the terrain exposed by the giant impact. Odysseus (280 miles, or 450 kilometers, across) is one of the largest impact craters on Saturn's icy moons, and may have significantly altered the geologic history of Tethys. Tethys' dark side (at right) is faintly illuminated by reflected light from Saturn. Images taken using ultraviolet, green and infrared spectral filters were combined to create this color view. North on Tethys (660 miles or 1,062 kilometers across) is up in this view. The view was acquired on May 9, 2015 at a distance of approximately 186,000 miles (300,000 kilometers) from Tethys. Image scale is 1.1 mile (1.8 kilometers) per pixel. http://photojournal.jpl.nasa.gov/catalog/PIA18329

  13. Flexural analysis of two broken foreland basins; Late Cenozoic Bermejo basin and Early Cenozoic Green River basin

    SciTech Connect

    Flemings, P.B.; Jordan, T.E.; Reynolds, S.

    1986-05-01

    Lithospheric flexure that generates basin in a broke foreland setting (e.g., the Laramide foreland of Wyoming) is a three-dimensional system related to shortening along basin-bounding faults. The authors modeled the elastic flexure in three dimensions for two broken foreland basins: the early Cenozoic Green River basin and the analogous late Cenozoic Bermejo basin of Argentina. Each basin is located between a thrust belt and a reverse-fault-bounded basement uplift. Both basins are asymmetric toward the basement uplifts and have a central basement high: the Rock Springs uplift and the Pie de Palo uplift, respectively. The model applies loads generated by crustal thickening to an elastic lithosphere overlying a fluid mantle. Using the loading conditions of the Bermejo basin based on topography, limited drilling, and reflection and earthquake seismology, the model predicts the current Bermejo basin geometry. Similarly, flexure under the loading conditions in the Green River basin, which are constrained by stratigraphy, well logs, and seismic profiling and summed for Late Cretaceous (Lance Formation) through Eocene (Wasatch Formation), successfully models the observed geometry of the pre-Lance surface. Basin depocenters (> 4 km for the Green River basin; > 7 km for the Bermejo basin) and central uplifts are predicted to result from constructive interference of the nonparallel applied loads. Their Bermejo model implies that instantaneous basin geometry is successfully modeled by crustal loading, whereas the Green River basin analysis suggests that basin evolution can be modeled over large time steps (e.g., 20 Ma). This result links instantaneous basin geometry to overall basin evolution and is a first step in predicting stratigraphic development.

  14. Paleothermometry of the Sydney Basin

    SciTech Connect

    Middleton, M.F.; Schmidt, P.W.

    1982-07-10

    Evidence from overprinting of magnetizations of Late Permian and Mesozoic rocks and from the rank of Permian coals and Mesozoic phytoclasts (coal particles) suggests that surface rocks in the Sydney Basin, eastern Australia, have been raised to temperatures of the order of 200 /sup 0/C or higher. As vitrinite reflectance, an index of coal rank or coalification, is postulated to vary predictably with temperature and time, estimates of the paleotemperatures in the Sydney Basin based on observed vitrinite reflectance measurements can be made in conjunction with reasonable assumptions about the tectonic and thermal histories of the basin. These estimates give maximum paleotemperatures of present day surface rocks in the range 60--249 /sup 0/C, depending on factors such as location in the basin, the thickness of the sediment eroded, and the maximum paleogeothermal gradient. Higher coal rank and, consequently, larger eroded thicknesses and paleogeothermal gradients occur along the eastern edge of the basin and may be related to seafloor spreading in the Tasman Sea on the basin's eastern margin. A theory of thermal activation of magnetization entailing the dependence of magnetic viscosity on the size distribution of the magnetic grains is used to obtain an independent estimate of the maximum paleotemperatures in the Sydney Basin. This estimate places the maximum paleotemperature in the range 250--300 /sup 0/C along the coastal region. Both coalification and thermal activation of magnetization models provide strong evidence of elevated paleotemperatures, which in places exceed 200 /sup 0/C, and the loss of sediment thicknesses in excess of 1 km due to erosion.

  15. Floor of Hellas Basin

    NASA Technical Reports Server (NTRS)

    2002-01-01

    [figure removed for brevity, see original site]

    With a diameter of roughly 2000 km and a depth of over 7 km, the Hellas Basin is the largest impact feature on Mars. Because of its great depth, there is significantly more atmosphere to peer through in order to see its floor, reducing the quality of the images taken from orbit. This THEMIS image straddles a scarp between the Hellas floor and an accumulation of material at least a half kilometer thick that covers much of the floor. The southern half of the image contains some of this material. Strange ovoid landforms are present here that give the appearance of flow. It is possible that water ice or even liquid water was present in the deposits and somehow responsible for the observed landscape. The floor of Hellas remains a poorly understood portion of the planet that should benefit from the analysis of new THEMIS data.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in

  16. Hydrogeologic framework of sedimentary deposits in six structural basins, Yakima River basin, Washington

    USGS Publications Warehouse

    Jones, M.A.; Vaccaro, J.J.; Watkins, A.M.

    2006-01-01

    The hydrogeologic framework was delineated for the ground-water flow system of the sedimentary deposits in six structural basins in the Yakima River Basin, Washington. The six basins delineated, from north to south are: Roslyn, Kittitas, Selah, Yakima, Toppenish, and Benton. Extent and thicknesses of the hydrogeologic units and total basin sediment thickness were mapped for each basin. Interpretations were based on information from about 4,700 well records using geochemical, geophysical, geologist's or driller's logs, and from the surficial geology and previously constructed maps and well interpretations. The sedimentary deposits were thickest in the Kittitas Basin reaching a depth of greater than 2,000 ft, followed by successively thinner sedimentary deposits in the Selah basin with about 1,900 ft, Yakima Basin with about 1,800 ft, Toppenish Basin with about 1,200 ft, Benton basin with about 870 ft and Roslyn Basin with about 700 ft.

  17. Inversion of Extensional Sedimentary Basins

    NASA Astrophysics Data System (ADS)

    Buiter, Susanne J. H.; Pfiffner, O. Adrian

    The evolution of extensional sedimentary basins is governed by the surrounding stress field and can, therefore, be expected to be highly sensitive to variations in these stresses. Important changes in basin geometry are to be expected in the case of an even short-lived reversal from extension to compression. We investigate the evolu- tion of fold and thrust structures which form in compression after extension, when basin forming processes have come to a complete stop. To this purpose, we use a two- dimensional, viscoplastic model and start our experiments from a pre-existing exten- sional geometry. We illustrate the sensitivity of the evolving structures to inherited extensional geometry, sedimentary and erosional processes, and material properties. One series of our model experiments involves the upper- to middle crust only in order to achieve a high detail in the basin area. We find that our results agree with examples from nature and analogue studies in, among others, the uplift and rotation of syn-rift sediments, the propagation of shear zones into the post-rift sediments and, in specific cases, the development of back-thrusts or basement short-cut faults. We test the out- come of these models by performing a second series of model simulations in which basins on a continental margin are inverted through their progressive approach of a subduction zone. These latter models are on the scale of the whole upper mantle.

  18. Water Accounting from Ungauged Basins

    NASA Astrophysics Data System (ADS)

    Bastiaanssen, W. G.; Savenije, H.

    2014-12-01

    Water scarcity is increasing globally. This requires a more accurate management of the water resources at river basin scale and understanding of withdrawals and return flows; both naturally and man-induced. Many basins and their tributaries are, however, ungauged or poorly gauged. This hampers sound planning and monitoring processes. While certain countries have developed clear guidelines and policies on data observatories and data sharing, other countries and their basin organization still have to start on developing data democracies. Water accounting quantifies flows, fluxes, stocks and consumptive use pertaining to every land use class in a river basin. The objective is to derive a knowledge base with certain minimum information that facilitates decision making. Water Accounting Plus (WA+) is a new method for water resources assessment reporting (www.wateraccounting.org). While the PUB framework has yielded several deterministic models for flow prediction, WA+ utilizes remote sensing data of rainfall, evaporation (including soil, water, vegetation and interception evaporation), soil moisture, water levels, land use and biomass production. Examples will be demonstrated that show how remote sensing and hydrological models can be smartly integrated for generating all the required input data into WA+. A standard water accounting system for all basins in the world - with a special emphasis on data scarce regions - is under development. First results of using remote sensing measurements and hydrological modeling as an alternative to expensive field data sets, will be presented and discussed.

  19. Testing for Basins of Wada

    PubMed Central

    Daza, Alvar; Wagemakers, Alexandre; Sanjuán, Miguel A. F.; Yorke, James A.

    2015-01-01

    Nonlinear systems often give rise to fractal boundaries in phase space, hindering predictability. When a single boundary separates three or more different basins of attraction, we say that the set of basins has theWada property and initial conditions near that boundary are even more unpredictable. Many physical systems of interest with this topological property appear in the literature. However, so far the only approach to study Wada basins has been restricted to two-dimensional phase spaces. Here we report a simple algorithm whose purpose is to look for the Wada property in a given dynamical system. Another benefit of this procedure is the possibility to classify and study intermediate situations known as partially Wada boundaries. PMID:26553444

  20. Testing for Basins of Wada.

    PubMed

    Daza, Alvar; Wagemakers, Alexandre; Sanjuán, Miguel A F; Yorke, James A

    2015-11-10

    Nonlinear systems often give rise to fractal boundaries in phase space, hindering predictability. When a single boundary separates three or more different basins of attraction, we say that the set of basins has the Wada property and initial conditions near that boundary are even more unpredictable. Many physical systems of interest with this topological property appear in the literature. However, so far the only approach to study Wada basins has been restricted to two-dimensional phase spaces. Here we report a simple algorithm whose purpose is to look for the Wada property in a given dynamical system. Another benefit of this procedure is the possibility to classify and study intermediate situations known as partially Wada boundaries.

  1. Dynamic reorganization of river basins.

    PubMed

    Willett, Sean D; McCoy, Scott W; Perron, J Taylor; Goren, Liran; Chen, Chia-Yu

    2014-03-07

    River networks evolve as migrating drainage divides reshape river basins and change network topology by capture of river channels. We demonstrate that a characteristic metric of river network geometry gauges the horizontal motion of drainage divides. Assessing this metric throughout a landscape maps the dynamic states of entire river networks, revealing diverse conditions: Drainage divides in the Loess Plateau of China appear stationary; the young topography of Taiwan has migrating divides driving adjustment of major basins; and rivers draining the ancient landscape of the southeastern United States are reorganizing in response to escarpment retreat and coastal advance. The ability to measure the dynamic reorganization of river basins presents opportunities to examine landscape-scale interactions among tectonics, erosion, and ecology.

  2. Oil in the Malvinas Basin

    SciTech Connect

    Galeazzi, J.S.

    1996-08-01

    The Malvinas Basin is petroliferous. The main source rocks are Late Jurassic and Early Cretaceous outer shelf to basinal shales known as the Pampa Rincon and Lower Inoceramus formations. Main reservoirs are fluvial and shallow-marine sandstones of the coeval Springhill Formation. On the western flank of the basin, 17 wells drilled the Cenozoic and Mesozoic column. Three of these wells discovered hydrocarbons within the Springhill Formation, and one discovered oil in Early Paleogene sandstones. Additionally, some wells recorded shows at different levels within the stratigraphic succession. A detailed overview of the drilled portion of the basin permitted the construction of a sequence stratigraphic framework, and yielded clues on a complex history of deformation. Interpretation of facies and stratal stacking and termination patterns determined that the main reservoir and source rocks were deposited in a ramp-style depositional setting. They represent the lower transgressive phase of a Late Jurassic to Early Cretaceous megasequence deposited during the early sag stage of the basin. Alternative reservoirs to the Springhill sandstones include early Paleogene glauconitic sandstones and carbonates, and Miocene deep-water turbidites. Structural trap styles include normal fault features of Jurassic to Early Cretaceous age, and compressional and inverted positive structures due to Neogene compression. Possible combination and stratigraphic traps include: little tested onlap pinchout of Late Jurassic to Early Cretaceous and Paleogene sandstones and untested erosionally truncated Paleogene sandstones; Early Paleogene carbonate buildups and Miocene deep-water turbidite mounds. The understanding of the geology of the western Malvinas Basin is the key to success of exploration in the huge frontier surrounding areas.

  3. Origin of the earth's ocean basins

    NASA Technical Reports Server (NTRS)

    Frex, H.

    1977-01-01

    The earth's original ocean basins were mare-type basins produced 4 billion years ago by the flux of asteroid-sized objects responsible for the lunar mare basins. Scaling upwards from the observed number of lunar basins for the greater capture cross-section and impact velocity of the Earth indicates that at least 50 percent of an original global crust would have been converted to basin topography. These basins were flooded by basaltic liquids in times short compared to the isostatic adjustment time for the basin. The modern crustal dichotomy (60 percent oceanic, 40 percent continental crust) was established early in the history of the earth, making possible the later onset of plate tectonic processes. These later processes have subsequently reworked, in several cycles, principally the oceanic parts of the earth's crust, changing the configuration of the continents in the process. Ocean basins (and oceans themselves) may be rare occurrences on planets in other star systems.

  4. Origin of the earth's ocean basins

    NASA Technical Reports Server (NTRS)

    Frey, H.

    1977-01-01

    The earth's original ocean basins are proposed to be mare-type basins produced 4 billion y.a. by the flux of asteroid-sized objects responsible for the lunar mare basins. Scaling upward from the observed number of lunar basins for the greater capture cross-section and impact velocity of the earth indicates that at least 50% of an original global crust would have been converted to basin topography. These basins were flooded by basaltic liquids in times short compared to the isostatic adjustment time for the basin. The modern crustal dichotomy (60% oceanic, 40% continental crust) was established early in the history of the earth, making possible the later onset of plate tectonic processes. These later processes have subsequently reworked, in several cycles, principally the oceanic parts of the earth's crust, changing the configuration of the continents in the process. Ocean basins (and oceans themselves) may be rare occurrences on planets in other star systems.

  5. Vertical Analysis of Martian Drainage Basins

    NASA Technical Reports Server (NTRS)

    Stepinski, T. F.; OHara, W. J.

    2003-01-01

    We have performed a vertical analysis of drainage basins on Mars that were computationally extracted from DEMs based on the MOLA data. Longitudinal profiles of main streams are calculated and the slope-area relation is established for 20 basins coming from assorted martian locations. An identical analysis is done for 19 terrestrial river basins. Our results show that, in comparison to terrestrial basins, martian basins have more linear longitudinal profiles, more frequent existence of knickpoints, predominance of asymmetric location of the main stream in the basin, and smaller values of concavity exponent. This suggests a limited role for surface runoff on the global scale. However, two basins extracted from the slopes of martian volcanoes show a strong similarity to terrestrial basins, indicating a possible local role for the process of surface runoff.

  6. Origin of the earth's ocean basins

    NASA Technical Reports Server (NTRS)

    Frey, H.

    1977-01-01

    The earth's original ocean basins are proposed to be mare-type basins produced 4 billion y.a. by the flux of asteroid-sized objects responsible for the lunar mare basins. Scaling upward from the observed number of lunar basins for the greater capture cross-section and impact velocity of the earth indicates that at least 50% of an original global crust would have been converted to basin topography. These basins were flooded by basaltic liquids in times short compared to the isostatic adjustment time for the basin. The modern crustal dichotomy (60% oceanic, 40% continental crust) was established early in the history of the earth, making possible the later onset of plate tectonic processes. These later processes have subsequently reworked, in several cycles, principally the oceanic parts of the earth's crust, changing the configuration of the continents in the process. Ocean basins (and oceans themselves) may be rare occurrences on planets in other star systems.

  7. H-Area Seepage Basins

    SciTech Connect

    Stejskal, G.

    1990-12-01

    During the third quarter of 1990 the wells which make up the H-Area Seepage Basins (H-HWMF) monitoring network were sampled. Laboratory analyses were performed to measure levels of hazardous constituents, indicator parameters, tritium, nonvolatile beta, and gross alpha. A Gas Chromatograph Mass Spectrometer (GCMS) scan was performed on all wells sampled to determine any hazardous organic constituents present in the groundwater. The primary contaminants observed at wells monitoring the H-Area Seepage Basins are tritium, nitrate, mercury, gross alpha, nonvolatile beta, trichloroethylene (TCE), tetrachloroethylene, lead, cadmium, arsenic, and total radium.

  8. 77 FR 45653 - Yakima River Basin Conservation Advisory Group; Yakima River Basin Water Enhancement Project...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-01

    ... Conservation Advisory Group; Yakima River Basin Water Enhancement Project, Yakima, WA AGENCY: Bureau of... Committee Act, the Yakima River Basin Conservation Advisory Group, Yakima River Basin Water Enhancement... River Basin Water Conservation Program. DATES: The meeting will be held on Tuesday, August 21,...

  9. Caribbean basin framework, 4: Maracaibo basin, northwestern Venezuela

    SciTech Connect

    Lugo, J. )

    1991-03-01

    The Maracaibo basin is presently located in a topographic depression on the Maracaibo block, a triangular, fault-bounded block within the Caribbean-South America plate boundary of northwestern Venezuela. Intense oil exploration over the last 50 years has produced a large amount of seismic and well data that can be used to constrain four Jurassic to Recent tectonic and depositional events that affected the region: (1). Late Jurassic rift phase and subsidence along normal faults striking north-northeast across the floor of the basin; (2) Cretaceous to early Eocene subsidence recorded by shallow to deep marine carbonate and clastic rocks that thicken from south to north and completely cover Permian rocks of the Merida arch; (3) Eocene folding, thrusting, and initial reactivation of Jurassic normal faults as convergent strike-slip and reverse faults. Eocene clastic sediments are thickest in a narrow northwest-trending foredeep on the northeastern margin of the basin; (4) Late Miocene to Recent northwest-southeast convergence is marked by continued reactivation of Jurassic normal faults as reverse and left-lateral strike-slip faults, uplift of mountain ranges bordering the basin, and deposition of up to 10 km of clastic sediment.

  10. A combined polarizing microscope, XRD, SEM, and specific gravity study of the petrified woods of volcanic origin from the Çamlıdere-Çeltikçi-Güdül fossil forest, in Ankara, Turkey

    NASA Astrophysics Data System (ADS)

    Hatipoğlu, Murat; Türk, Necdet

    2009-03-01

    The fossil forest in the Çamlıdere-Çeltikçi-Güdül region of the province of Ankara in Turkey has a large number of petrified coniferous and oak tree remains. Petrification occurred in volcanic ashes and tuffs with permineralization, and Fe, Mg, Ca and Ni ions played important roles in the substitution of Si for C. However, the petrified wood samples are heterogeneous in colouration, weight, toughness, and durability, despite being obtained from the same source. Those features are very important for end-users because petrified woods, if cut and polished, are used widely as both decorative indoor tiles and gemstone objects, but heterogeneous materials suffer large wastage while they are being worked and used. Chemical analyses, specific gravity measurements, polarizing microscope studies, X-ray diffraction patterns, and scanning electron image evaluations were performed to classify and identify the homogenous material of the petrified woods relating to its physical and mineralogical characteristics. The different characteristics of the petrified wood samples are due to their varying inner structures, which depend on the replacement silica-building phases and their ratios, and silica particle sizes. Thin sections and XRD patterns revealed that petrified woods in the region were silicified by replacement with both chalcedonic quartz components, including chalcedony (length-fast quartz), moganite and orthorhombic-silica (length-slow quartz), and opalline quartz components including opal-CT and opal-C (length-slow quartz). The scanning electron microscope images were shown that the internal structures of the petrified woods consist of mostly submicron-sized (100-800 nm), and partially nano-sized (60-120 nm) silica-building particles. So, the petrified wood samples can be firstly classified into five main-groups based on their colourations and specific gravity values, then, into three sub-groups based on the principal chalcedonic and opalline quartz silica

  11. A Randomized, Double-Blind, Placebo-Controlled Phase II Trial Investigating the Safety and Immunogenicity of Modified Vaccinia Ankara Smallpox Vaccine (MVA-BN®) in 56-80-Year-Old Subjects

    PubMed Central

    Greenberg, Richard N.; Hay, Christine M.; Stapleton, Jack T.; Marbury, Thomas C.; Wagner, Eva; Kreitmeir, Eva; von Krempelhuber, Alfred; Young, Philip; Nichols, Richard; Meyer, Thomas P.; Weigl, Josef; Virgin, Garth; Arndtz-Wiedemann, Nathaly; Chaplin, Paul

    2016-01-01

    Background Modified Vaccinia Ankara MVA-BN® is a live, highly attenuated, viral vaccine under advanced development as a non-replicating smallpox vaccine. In this Phase II trial, the safety and immunogenicity of Modified Vaccinia Ankara MVA-BN® (MVA) was assessed in a 56–80 years old population. Methods MVA with a virus titer of 1 x 108 TCID50/dose was administered via subcutaneous injection to 56–80 year old vaccinia-experienced subjects (N = 120). Subjects received either two injections of MVA (MM group) or one injection of Placebo and one injection of MVA (PM group) four weeks apart. Safety was evaluated by assessment of adverse events (AE), focused physical exams, electrocardiogram recordings and safety laboratories. Solicited AEs consisted of a set of pre-defined expected local reactions (erythema, swelling, pain, pruritus, and induration) and systemic symptoms (body temperature, headache, myalgia, nausea and fatigue) and were recorded on a memory aid for an 8-day period following each injection. The immunogenicity of the vaccine was evaluated in terms of humoral immune responses measured with a vaccinia-specific enzyme-linked immunosorbent assay (ELISA) and a plaque reduction neutralization test (PRNT) before and at different time points after vaccination. Results Vaccinations were well tolerated by all subjects. No serious adverse event related to MVA and no case of myopericarditis was reported. The overall incidence of unsolicited AEs was similar in both groups. For both groups immunogenicity responses two weeks after the final vaccination (i.e. Visit 4) were as follows: Seroconversion (SC) rates (doubling of titers from baseline) in vaccine specific antibody titers measured by ELISA were 83.3% in Group MM and 82.8% in Group PM (difference 0.6% with 95% exact CI [-13.8%, 15.0%]), and 90.0% for Group MM and 77.6% for Group PM measured by PRNT (difference 12.4% with 95% CI of [-1.1%, 27.0%]). Geometric mean titers (GMT) measured by ELISA two weeks after

  12. Modified vaccinia virus Ankara expressing the hemagglutinin of pandemic (H1N1) 2009 virus induces cross-protective immunity against Eurasian 'avian-like' H1N1 swine viruses in mice.

    PubMed

    Castrucci, Maria R; Facchini, Marzia; Di Mario, Giuseppina; Garulli, Bruno; Sciaraffia, Ester; Meola, Monica; Fabiani, Concetta; De Marco, Maria A; Cordioli, Paolo; Siccardi, Antonio; Kawaoka, Yoshihiro; Donatelli, Isabella

    2014-05-01

    To examine cross-reactivity between hemagglutinin (HA) derived from A/California/7/09 (CA/09) virus and that derived from representative Eurasian "avian-like" (EA) H1N1 swine viruses isolated in Italy between 1999 and 2008 during virological surveillance in pigs. Modified vaccinia virus Ankara (MVA) expressing the HA gene of CA/09 virus (MVA-HA-CA/09) was used as a vaccine to investigate cross-protective immunity against H1N1 swine viruses in mice. Two classical swine H1N1 (CS) viruses and four representative EA-like H1N1 swine viruses previously isolated during outbreaks of respiratory disease in pigs on farms in Northern Italy were used in this study. Female C57BL/6 mice were vaccinated with MVA/HA/CA/09 and then challenged intranasally with H1N1 swine viruses. Cross-reactive antibody responses were determined by hemagglutination- inhibition (HI) and virus microneutralizing (MN) assays of sera from MVA-vaccinated mice. The extent of protective immunity against infection with H1N1 swine viruses was determined by measuring lung viral load on days 2 and 4 post-challenge. Systemic immunization of mice with CA/09-derived HA, vectored by MVA, elicited cross-protective immunity against recent EA-like swine viruses. This immune protection was related to the levels of cross-reactive HI antibodies in the sera of the immunized mice and was dependent on the similarity of the antigenic site Sa of H1 HAs. Our findings suggest that the herd immunity elicited in humans by the pandemic (H1N1) 2009 virus could limit the transmission of recent EA-like swine HA genes into the influenza A virus gene pool in humans. © 2013 The Authors Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.

  13. Comparison of homologous and heterologous prime-boost vaccine approaches using Modified Vaccinia Ankara and soluble protein to induce neutralizing antibodies by the human cytomegalovirus pentamer complex in mice.

    PubMed

    Chiuppesi, Flavia; Wussow, Felix; Scharf, Louise; Contreras, Heidi; Gao, Han; Meng, Zhuo; Nguyen, Jenny; Barry, Peter A; Bjorkman, Pamela J; Diamond, Don J

    2017-01-01

    Since neutralizing antibodies (NAb) targeting the human cytomegalovirus (HCMV) pentamer complex (PC) potently block HCMV host cell entry, anti-PC NAb induction is thought to be important for a vaccine formulation to prevent HCMV infection. By developing a vaccine strategy based on soluble PC protein and using a previously generated Modified Vaccinia Ankara vector co-expressing all five PC subunits (MVA-PC), we compared HCMV NAb induction by homologous immunization using prime-boost vaccine regimen employing only PC protein or MVA-PC and heterologous immunization using prime-boost combinations of PC protein and MVA-PC. Utilizing a recently isolated anti-PC NAb, we produced highly pure soluble PC protein that displayed conformational and linear neutralizing epitopes, interfered with HCMV entry, and was recognized by antibodies induced by HCMV during natural infection. Mice vaccinated by different immunization routes with the purified PC protein in combination with a clinically approved adjuvant formulation elicited high-titer and durable HCMV NAb. While MVA-PC and soluble PC protein either alone or in combination elicited robust HCMV NAb, significantly different potencies of these vaccine approaches were observed in dependence on immunization schedule. Using only two immunizations, vaccination with MVA-PC alone or prime-boost combinations of MVA-PC and PC protein was significantly more effective in stimulating HCMV NAb than immunization with PC protein alone. In contrast, with three immunizations, NAb induced by soluble PC protein either alone or combined with two boosts of MVA-PC increased to levels that exceeded NAb titer stimulated by MVA-PC alone. These results provide insights into the potency of soluble protein and MVA to elicit NAb by the HCMV PC via homologous and heterologous prime-boost immunization, which may contribute to develop clinically deployable vaccine strategies to prevent HCMV infection.

  14. Comparison of homologous and heterologous prime-boost vaccine approaches using Modified Vaccinia Ankara and soluble protein to induce neutralizing antibodies by the human cytomegalovirus pentamer complex in mice

    PubMed Central

    Chiuppesi, Flavia; Wussow, Felix; Scharf, Louise; Contreras, Heidi; Gao, Han; Meng, Zhuo; Nguyen, Jenny; Barry, Peter A.; Bjorkman, Pamela J.

    2017-01-01

    Since neutralizing antibodies (NAb) targeting the human cytomegalovirus (HCMV) pentamer complex (PC) potently block HCMV host cell entry, anti-PC NAb induction is thought to be important for a vaccine formulation to prevent HCMV infection. By developing a vaccine strategy based on soluble PC protein and using a previously generated Modified Vaccinia Ankara vector co-expressing all five PC subunits (MVA-PC), we compared HCMV NAb induction by homologous immunization using prime-boost vaccine regimen employing only PC protein or MVA-PC and heterologous immunization using prime-boost combinations of PC protein and MVA-PC. Utilizing a recently isolated anti-PC NAb, we produced highly pure soluble PC protein that displayed conformational and linear neutralizing epitopes, interfered with HCMV entry, and was recognized by antibodies induced by HCMV during natural infection. Mice vaccinated by different immunization routes with the purified PC protein in combination with a clinically approved adjuvant formulation elicited high-titer and durable HCMV NAb. While MVA-PC and soluble PC protein either alone or in combination elicited robust HCMV NAb, significantly different potencies of these vaccine approaches were observed in dependence on immunization schedule. Using only two immunizations, vaccination with MVA-PC alone or prime-boost combinations of MVA-PC and PC protein was significantly more effective in stimulating HCMV NAb than immunization with PC protein alone. In contrast, with three immunizations, NAb induced by soluble PC protein either alone or combined with two boosts of MVA-PC increased to levels that exceeded NAb titer stimulated by MVA-PC alone. These results provide insights into the potency of soluble protein and MVA to elicit NAb by the HCMV PC via homologous and heterologous prime-boost immunization, which may contribute to develop clinically deployable vaccine strategies to prevent HCMV infection. PMID:28813507

  15. Critical Role for Env as well as Gag-Pol in Control of a Simian-Human Immunodeficiency Virus 89.6P Challenge by a DNA Prime/Recombinant Modified Vaccinia Virus Ankara Vaccine

    PubMed Central

    Amara, Rama Rao; Smith, James M.; Staprans, Silvija I.; Montefiori, David C.; Villinger, Francois; Altman, John D.; O'Neil, Shawn P.; Kozyr, Natalia L.; Xu, Yan; Wyatt, Linda S.; Earl, Patricia L.; Herndon, James G.; McNicholl, Janet M.; McClure, Harold M.; Moss, Bernard; Robinson, Harriet L.

    2002-01-01

    Cellular immune responses against epitopes in conserved Gag and Pol sequences of human immunodeficiency virus type 1 have become popular targets for candidate AIDS vaccines. Recently, we used a simian-human immunodeficiency virus model (SHIV 89.6P) with macaques to demonstrate the control of a pathogenic mucosal challenge by priming with Gag-Pol-Env-expressing DNA and boosting with Gag-Pol-Env-expressing recombinant modified vaccinia virus Ankara (rMVA). Here we tested Gag-Pol DNA priming and Gag-Pol rMVA boosting to evaluate the contribution of anti-Env immune responses to viral control. The Gag-Pol vaccine raised frequencies of Gag-specific T cells similar to those raised by the Gag-Pol-Env vaccine. Following challenge, these rapidly expanded to counter the challenge infection. Despite this, the control of the SHIV 89.6P challenge was delayed and inconsistent in the Gag-Pol-vaccinated group and all of the animals underwent severe and, in most cases, sustained loss of CD4+ cells. Interestingly, most of the CD4+ cells that were lost in the Gag-Pol-vaccinated group were uninfected cells. We suggest that the rapid appearance of binding antibody for Env in Gag-Pol-Env-vaccinated animals helped protect uninfected CD4+ cells from Env-induced apoptosis. Our results highlight the importance of immune responses to Env, as well as to Gag-Pol, in the control of immunodeficiency virus challenges and the protection of CD4+ cells. PMID:12021347

  16. Towards a universal vaccine for avian influenza: protective efficacy of modified Vaccinia virus Ankara and Adenovirus vaccines expressing conserved influenza antigens in chickens challenged with low pathogenic avian influenza virus.

    PubMed

    Boyd, Amy C; Ruiz-Hernandez, Raul; Peroval, Marylene Y; Carson, Connor; Balkissoon, Devanand; Staines, Karen; Turner, Alison V; Hill, Adrian V S; Gilbert, Sarah C; Butter, Colin

    2013-01-11

    Current vaccines targeting surface proteins can drive antigenic variation resulting either in the emergence of more highly pathogenic viruses or of antigenically distinct viruses that escape control by vaccination and thereby persist in the host population. Influenza vaccines typically target the highly mutable surface proteins and do not provide protection against heterologous challenge. Vaccines which induce immune responses against conserved influenza epitopes may confer protection against heterologous challenge. We report here the results of vaccination with recombinant modified Vaccinia virus Ankara (MVA) and Adenovirus (Ad) expressing a fusion construct of nucleoprotein and matrix protein (NP+M1). Prime and boost vaccination regimes were trialled in different ages of chicken and were found to be safe and immunogenic. Interferon-γ (IFN-γ) ELISpot was used to assess the cellular immune response post secondary vaccination. In ovo Ad prime followed by a 4 week post hatch MVA boost was identified as the most immunogenic regime in one outbred and two inbred lines of chicken. Following vaccination, one inbred line (C15I) was challenged with low pathogenic avian influenza (LPAI) H7N7 (A/Turkey/England/1977). Birds receiving a primary vaccination with Ad-NP+M1 and a secondary vaccination with MVA-NP+M1 exhibited reduced cloacal shedding as measured by plaque assay at 7 days post infection compared with birds vaccinated with recombinant viruses containing irrelevant antigen. This preliminary indication of efficacy demonstrates proof of concept in birds; induction of T cell responses in chickens by viral vectors containing internal influenza antigens may be a productive strategy for the development of vaccines to induce heterologous protection against influenza in poultry.

  17. Supplementary information on K-Basin sludges

    SciTech Connect

    MAKENAS, B.J.

    1999-03-15

    Three previous documents in this series have been published covering the analysis of: K East Basin Floor and Pit Sludge, K East Basin Canister Sludge, and K West Basin Canister Sludge. Since their publication, additional data have been acquired and analyses performed. It is the purpose of this volume to summarize the additional insights gained in the interim time period.

  18. Rio Grande/Rio Bravo Basin Coalition

    Treesearch

    Sarah Kotchian

    1999-01-01

    In June 1994, one hundred people gathered for the first Uniting the Basin Conference in El Paso to discuss the state of their basin and to explore ways to improve its sustainability for future generations. One of the recommendations of that conference was the formation of an international non-governmental coalition of groups throughout the Basin to share information...

  19. IMPROVEMENTS IN PUMP INTAKE BASIN DESIGN

    EPA Science Inventory

    Pump intake basins (or wet wells or pump sumps) designed in accordance with accepted criteria often pose many operation and maintenance problems. The report summarizes field surveys of three trench-type pump intake basins representative of 29 such basins that have been in satisfa...

  20. 5. Basin assessment and watershed analysis

    Treesearch

    Leslie M. Reid; Robert R. Ziemer

    1994-01-01

    Abstract - Basin assessment is an important component of the President's Forest Plan, yet it has received little attention. Basin assessments are intended both to guide watershed analyses by specifying types of issues and interactions that need to be understood, and, eventually, to integrate the results of watershed analyses occurring within a river basin....

  1. IMPROVEMENTS IN PUMP INTAKE BASIN DESIGN

    EPA Science Inventory

    Pump intake basins (or wet wells or pump sumps) designed in accordance with accepted criteria often pose many operation and maintenance problems. The report summarizes field surveys of three trench-type pump intake basins representative of 29 such basins that have been in satisfa...

  2. K Basins Groundwater Monitoring Task, K Basins Closure Project: Report for July, August, and September 2006

    SciTech Connect

    Peterson, Robert E.

    2006-12-08

    This report provides information on groundwater monitoring at the K Basins during July, August, and September 2006. Conditions remain very similar to those reported in the previous quarterly report, with no evidence in monitoring results to suggest groundwater impact from current loss of basin water to the ground. The K Basins monitoring network will be modified in the coming quarters as a consequence of remedial action at KE Basin, i.e., removal of sludge and basin demolition.

  3. Great Basin wildlife disease concerns

    Treesearch

    Russ Mason

    2008-01-01

    In the Great Basin, wildlife diseases have always represented a significant challenge to wildlife managers, agricultural production, and human health and safety. One of the first priorities of the U.S. Department of Agriculture, Division of Fish and Wildlife Services was Congressionally directed action to eradicate vectors for zoonotic disease, particularly rabies, in...

  4. The Amazon Basin in transition

    Treesearch

    Eric A. Davidson; Alessandro C. de Araujo; Paulo Artaxo; Jennifer K. Balch; I. Foster Brown; Mercedes M.C. Bustamente; Michael T. Coe; Ruth S. DeFriess; Michael Keller; Marcos Longo; J. William Munger; Wilfrid Schroeder; Britaldo Soares-Filho; Carlos M. Souza, Jr.; Steven C. Wofsy

    2012-01-01

    Agricultural expansion and climate variability have become important agents of disturbance in the Amazon basin. Recent studies have demonstrated considerable resilience of Amazonian forests to moderate annual drought, but they also show that interactions between deforestation, fire and drought potentially lead to losses of carbon storage and changes in regional...

  5. Fire and the Great Basin

    Treesearch

    Jeanne C. Chambers

    2008-01-01

    Fire regimes in Great Basin ecosystems have changed significantly since settlement of the region in the mid- to late 1800s. The following provides an overview of the nature and consequences of altered fire regimes, factors influencing the changes, and research and management questions that need to be addressed to maintain sustainable ecosystems.

  6. BASIN: Beowulf Analysis Symbolic INterface

    NASA Astrophysics Data System (ADS)

    Vesperini, Enrico; Goldberg, David M.; McMillan, Stephen L. W.; Dura, James; Jones, Douglas

    2013-08-01

    BASIN (Beowulf Analysis Symbolic INterface) is a flexible, integrated suite of tools for multiuser parallel data analysis and visualization that allows researchers to harness the power of Beowulf PC clusters and multi-processor machines without necessarily being experts in parallel programming. It also includes general tools for data distribution and parallel operations on distributed data for developing libraries for specific tasks.

  7. Tectonic development of Michigan basin

    SciTech Connect

    Prouty, C.E.

    1986-08-01

    The general form of the Michigan basin and surrounding frame structures - the Findlay, Kankakee, and Wisconsin arches - was inherited from the Precambrian. An ongoing study has provided new information on present basin configuration and the evolution of intrabasinal structures during the Paleozoic. This study involves: (1) isopach, structure contour, depocenter, and lithofacies map preparation; (2) diagenetic and epigenetic dolomitization processes and patterns; (3) Landsat imagery and lineament interpretation; (4) recognition of shearing mechanics and the resulting shear faulting and folding; and (5) the recognition of radial faults in contrast to shear faults. Monitoring of the above throughout the Paleozoic indicates that tectonic events within the basin were episodic in nature. Stresses are recognized as external and, through Fourier analysis of lineaments (shear faults), may be demonstrated as from the southeast, probably the Appalachian mobile belt. Shear faults are seated in Precambrian rocks, although they are probably not of that age. The faults occur with accompanying shear folds in rocks possibly as early as the Late Ordovician or Middle Silurian, but definitely by the Middle Devonian with the principal faulting and folding during the post-Osage Mississippian. Local shifting of the depocenter within the general Saginaw Bay area occurred during the early Paleozoic with a major shift westward to the present central basin position accompanied by the development of the present north-northwest ellipticity of the basin during the post-Osage, pre-Meramecian Mississippian. Barrier separation of the West Michigan Lagoon occurred in the Middle Ordovician and Middle and Late Devonian. Radial structures can be demonstrated in at least the Upper Silurian and Upper Devonian.

  8. Predicting the Eastern Mediterranean Basin

    NASA Astrophysics Data System (ADS)

    Royden, L.

    2011-12-01

    From ~30 Ma onwards, the evolution of the Mediterranean region has been dominated by the rapid migration of thin-skinned thrust-belts. Thrust belt migration has been accommodated by the opening of "back arc type" basins within the upper plate of the thrust belts. Migration of these thrust belts is associated with the migration of subduction systems where subduction and thrusting are driven largely by negative slab buoyancy. Where the subducting slab has large negative buoyancy, thrust belt migration is commonly rapid. Where buoyant continental lithosphere enters the subduction system, subduction ceases quickly. Hence the large-scale tectonic evolution of the Mediterranean basin is largely pre-conditioned by its paleogeography. This can be quantitatively illustrated for the Hellenic subduction system where the post Eocene evolution of the Hellenic thrust belt can be ascribed to the buoyancy of the lithosphere subducted. Entry of the Ionian oceanic lithosphere into a slow-moving trench at 10-15 Ma explains the increase in subduction rate along the central part of the trench, to ~35 mm/yr at present, while subduction rates along strike to the northeast, where continental/transitional crust is subducted, remain less than ~10 mm/yr. Using quantitative modeling of the Hellenic subduction system in post Eocene time, it is possible to approximate how this thrust belt, and the active subduction belt of the eastern Mediterranean, will evolve over the next 10 m.y. This exercise suggests that the large-scale evolution of the eastern Mediterranean basin will be strikingly similar to that of the western Mediterranean basin from 20-0 Ma. This highlights the common dynamic mechanism that shapes the large scale deformation and morphology of the Mediterranean basin.

  9. Seismically triggered turbidites in small margin basins: Alfonso Basin, Western Gulf of California and Santa Monica Basin, California Borderland

    NASA Astrophysics Data System (ADS)

    Gorsline, D. S.; De Diego, T.; Nava-Sanchez, E. H.

    2000-09-01

    Box cores and gravity cores collected in Santa Monica Basin, California Continental Borderland, and in Alfonso Basin, western Gulf of California, contain turbidites, some of which can be traced over much of the respective basin floors. In Santa Monica Basin, at least six of these basin-wide flows have been deposited over the past four to five centuries. In Alfonso Basin, 9-10 basin-wide turbidites have been deposited over the past few millenia. Both Santa Monica and Alfonso Basins have anoxic conditions over the deep basin floors, which inhibit bioturbation and preserve primary laminations. These deposits have been dated using the 210Pb and AMS 14C methods, and varve counting so it is therefore possible to date the turbidites. Those that were deposited during historic time can be matched with major floods or earthquakes in the region. In Santa Monica Basin, turbidity currents can be generated directly from decadal major flood discharges, or by centennial slope failures triggered by major earthquake shocks. The flood-generated turbidites are typically a fifth or less of the volume of the earthquake-generated turbidites. In Alfonso Basin, the tributary coastal canyon discharges are small and have a high proportion of coarse-grained sand, which is trapped on the shelves, and cannot directly supply turbidite volumes of basin-wide magnitude. Thus the turbidites seen in that basin floor are probably produced by slope failures of silty clay deposits which were seismically generated. The distribution of the dated turbidites, and a slip face in one box core from the landward slope, indicates a source on the landward depositional slope of the fault-bounded basin. Similar discontinuities of the same age have been reported on the eastern side of the Gulf in the Guaymas area. In ancient basins, the criteria that may distinguish seismo-turbidites are areal extent and volume where those factors can be estimated. Basin-wide turbidites are probably seismically triggered. If

  10. Automated basin delineation from digital terrain data

    NASA Technical Reports Server (NTRS)

    Marks, D.; Dozier, J.; Frew, J.

    1983-01-01

    While digital terrain grids are now in wide use, accurate delineation of drainage basins from these data is difficult to efficiently automate. A recursive order N solution to this problem is presented. The algorithm is fast because no point in the basin is checked more than once, and no points outside the basin are considered. Two applications for terrain analysis and one for remote sensing are given to illustrate the method, on a basin with high relief in the Sierra Nevada. This technique for automated basin delineation will enhance the utility of digital terrain analysis for hydrologic modeling and remote sensing.

  11. Mississippian facies relationships, eastern Anadarko basin, Oklahoma

    SciTech Connect

    Peace, H.W. ); Forgotson, J.M. )

    1991-08-01

    Mississippian strata in the eastern Anadarko basin record a gradual deepening of the basin. Late and post-Mississippian tectonism (Wichita and Arbuckle orogenies) fragmented the single large basin into the series of paired basins and uplifts recognized in the southern half of Oklahoma today. Lower Mississippian isopach and facies trends (Sycamore and Caney Formations) indicate that basinal strike in the study area (southeastern Anadarko basin) was predominantly east-west. Depositional environment interpretations made for Lower Mississippian strata suggest that the basin was partially sediment starved and exhibited a low shelf-to-basin gradient. Upper Mississippian isopach and facies trends suggest that basinal strike within the study area shifted from dominantly east-west to dominantly northwest-southeast due to Late Mississippian and Early Pennsylvanian uplift along the Nemaha ridge. Within the study area, the Chester Formation, composed of gray to dove-gray shales with interbedded limestones deposited on a carbonate shelf, thins depositionally into the basin and is thinnest at its facies boundary with the Springer Group and the upper portion of the Caney Formation. As basin subsidence rates accelerated, the southern edge of the Chester carbonate shelf was progressively drowned, causing a backstepping of the Chester Formation calcareous shale and carbonate facies. Springer Group sands and black shales transgressed northward over the drowned Chester Formation shelf.

  12. Geodynamics of the Sivas Basin (Turkey): from a forearc basin to a retroarc foreland basin

    NASA Astrophysics Data System (ADS)

    Legeay, Etienne; Ringenbach, Jean-Claude; Kergaravat, Charlie; Callot, Jean-Paul; Mohn, Geoffroy; Kavak, Kaan

    2016-04-01

    Anatolia records the consumption of several oceanic basins, from the Northern Neotethys domain, by north-dipping subduction until the end of Mesozoic. The associated obduction event occurred during Campanian, from North to South and from Greece to Oman, leading to the emplacement of ophiolite thrust sheets and associated ophiolitic mélange. In particular, the Sivas Basin in Eastern Anatolia is located at the boundary between the Kırsehir block to the East, Pontide arc to the North and Tauride Platform to the South, sutured by ophiolitic belts. The Sivas Basin formed a Tertiary fold-and-thrust belt, which exhibits mainly north verging thrust in Paleogene deposits, and South verging thrust in oligo-miocene sequence. To understand the northern verging thrust above south verging obduction, it is necessary to zoom out of the basin, and include a set of processes that affect the eastern Anatolia. This study aims to characterize the structural and sedimentary evolution of the Sivas Basin, based on a fieldwork approach, coupled to the interpretation of subsurface data, thermochronology and biostratigraphy. The Sivas Basin was initiated in a forearc setting relatively to the subduction of the Inner-Tauride Ocean while the associated ophiolites are obducted onto the northern passive margin of the Tauride margin. Early Maastrichtian to Paleocene deposits are represented by carbonate platforms located on ophiolitic highs, passing to turbidites and olistostomes toward the North. The early Eocene sediments, mainly composed of ophiolitic clasts, are deposited on a regional unconformity marked along the southern margin of the basin by incisions in response to the emergence of north-verging thrust. The middle Eocene sediments, intensively folded by northward thrusting, are mostly represented by flysch type deposits (olistostromes, mass-flows and turbidites). The onset of the compression is related to the initiation of the Taurus shortening in a retroarc situation, in response to

  13. Modelling Forearc Basin Formation and Stratigraphy

    NASA Astrophysics Data System (ADS)

    Mannu, Utsav; Ueda, Kosuke; Willett, Sean; Gerya, Taras; Strasser, Michael

    2017-04-01

    Comparison of synthetic stratigraphy of forearc basins as generated in coupled plate subduction and accretionary wedge models to the stratal patterns observed for forearc basins in nature, could be used to ascertain the dynamic consistency of the interpreted deformational history of the wedge. Additionally, it could help us understand the emergence of stratigraphic patterns in forearc basins as an interplay between sedimentary flux and wedge dynamics. Here we present a simple methodology to generate synthetic stratigraphy by emplacing isochronal surfaces during the evolution of the wedge. We use a dynamic 2D, high-resolution, thermo-mechanical, subduction model coupled to an adaptive irregular surface grid to model the free surface. In this model, we track basin stratigraphy developing in the wedge top basins atop the accretionary prism by emplacing lines of Lagrangian markers at discrete times along the upper surface of the model, which subsequently are buried, transported, and deformed according to the velocity field generated in the model. We conduct numerical experiments to identify the stratigraphic signatures of different forearc basin formation mechanisms. We also study the impact of hinterland and trench sedimentation on the wedge evolution and its impact on forearc basin formation. Forearc basins that form on top of the overriding plate remain passive to the deformation history of the wedge. Forearc basins formed as negative alpha basins remain mostly undeformed. Forearc basins that form due to wedge stabilization exhibit landward tilting of strata with time. We also find that trench sedimentation enhances the landward tilting of the basin by shifting deformation landwards and potentially triggering out-of-sequence-thrust emergence/reactivation. Predicted stratigraphic features in our numerical models agree well with stratigraphic patterns observed in different types of forearc basins in the Nankai Trough, Sunda Strait and Lombok Basin offshore Japan, Java

  14. Formation of lunar basin rings

    USGS Publications Warehouse

    Hodges, C.A.; Wilhelms, D.E.

    1978-01-01

    The origin of the multiple concentric rings that characterize lunar impact basins, and the probable depth and diameter of the transient crater have been widely debated. As an alternative to prevailing "megaterrace" hypotheses, we propose that the outer scarps or mountain rings that delineate the topographic rims of basins-the Cordilleran at Orientale, the Apennine at Imbrium, and the Altai at Nectaris-define the transient cavities, enlarged relatively little by slumping, and thus are analogous to the rim crests of craters like Copernicus; inner rings are uplifted rims of craters nested within the transient cavity. The magnitude of slumping that occurs on all scarps is insufficient to produce major inner rings from the outer. These conclusions are based largely on the observed gradational sequence in lunar central uplifts:. from simple peaks through somewhat annular clusters of peaks, peak and ring combinations and double ring basins, culminating in multiring structures that may also include peaks. In contrast, belts of slump terraces are not gradational with inner rings. Terrestrial analogs suggest two possible mechanisms for producing rings. In some cases, peaks may expand into rings as material is ejected from their cores, as apparently occurred at Gosses Bluff, Australia. A second process, differential excavation of lithologically diverse layers, has produced nested experimental craters and is, we suspect, instrumental in the formation of terrestrial ringed impact craters. Peak expansion could produce double-ring structures in homogeneous materials, but differential excavation is probably required to produce multiring and peak-in-ring configurations in large lunar impact structures. Our interpretation of the representative lunar multiring basin Orientale is consistent with formation of three rings in three layers detected seismically in part of the Moon-the Cordillera (basin-bounding) ring in the upper crust, the composite Montes Rook ring in the underlying

  15. THE ADVANCED CHEMISTRY BASINS PROJECT

    SciTech Connect

    William Goddard; Peter Meulbroek; Yongchun Tang; Lawrence Cathles III

    2004-04-05

    In the next decades, oil exploration by majors and independents will increasingly be in remote, inaccessible areas, or in areas where there has been extensive shallow exploration but deeper exploration potential may remain; areas where the collection of data is expensive, difficult, or even impossible, and where the most efficient use of existing data can drive the economics of the target. The ability to read hydrocarbon chemistry in terms of subsurface migration processes by relating it to the evolution of the basin and fluid migration is perhaps the single technological capability that could most improve our ability to explore effectively because it would allow us to use a vast store of existing or easily collected chemical data to determine the major migration pathways in a basin and to determine if there is deep exploration potential. To this end a the DOE funded a joint effort between California Institute of Technology, Cornell University, and GeoGroup Inc. to assemble a representative set of maturity and maturation kinetic models and develop an advanced basin model able to predict the chemistry of hydrocarbons in a basin from this input data. The four year project is now completed and has produced set of public domain maturity indicator and maturation kinetic data set, an oil chemistry and flash calculation tool operable under Excel, and a user friendly, graphically intuitive basin model that uses this data and flash tool, operates on a PC, and simulates hydrocarbon generation and migration and the chemical changes that can occur during migration (such as phase separation and gas washing). The DOE Advanced Chemistry Basin Model includes a number of new methods that represent advances over current technology. The model is built around the concept of handling arbitrarily detailed chemical composition of fluids in a robust finite-element 2-D grid. There are three themes on which the model focuses: chemical kinetic and equilibrium reaction parameters, chemical

  16. The Central European Permian Basins; Rheological and structural controls on basin history and on inter-basin connectivity

    NASA Astrophysics Data System (ADS)

    Smit, Jeroen; Van Wees, Jan-Diederik; Cloetingh, Sierd

    2014-05-01

    We analyse the relative importance of the major crustal-scale fault zones and crustal architecture in controlling basin formation, deformation and the structural connections between basins. The North and South Permian Basins of Central Europe are usually defined by the extend of Rotliegend sedimentary and volcanic units and not by a common tectonic origin or development. Instead, the sub-basins that together form the Permian Basins are each controlled by different structural and/or rheological controls that are inherited from Early Paleozoïc and older geodynamic processes, they are even located in different crustal/lithospheric domains. The North Permian basin is located on Baltic crust that was thinned during Late Proterozoïc - Early Paleozoïc times. South of the Thor suture, the South Permian basin and its sub-basins are located on Avalonian crust (Southern North Sea and North German Basins) and on the transition of East European cratonic and Avalonian crust (Polish Through). The size of crustal domains and of the faults that govern basin formation requires a regional-scale to assess their impact on basins and sub-basins. In the case of the Permian Basins this encompasses East Avalonia and surroundings, roughly speaking the area north of the Variscan Rheïc suture, east of the Atlantic and southwest of the Teisseyre-Tornquist line. This approach sheds light on the effects of long lived differences in crustal fabric which are responsible for spatial heterogeneity in stress and strain magnitudes and zonations of fracturing, burial history and temperature history. The focus on understanding the geomechanical control of large crustal-scale fault structures will provide the constraints and geometrical and compositional input for local models of stress and strain. Considering their fundamentally different structural and rheological controls, the Permian (sub)basins have a remarkably common history of subsidence and inversion, suggesting a more or less continuous

  17. CLEAR LAKE BASIN 2000 PROJECT

    SciTech Connect

    LAKE COUNTY SANITATION DISTRICT

    2003-03-31

    The following is a final report for the Clear Lake Basin 2000 project. All of the major project construction work was complete and this phase generally included final details and testing. Most of the work was electrical. Erosion control activities were underway to prepare for the rainy season. System testing including pump stations, electrical and computer control systems was conducted. Most of the project focus from November onward was completing punch list items.

  18. Tectonic classification of Cenozoic Iberian foreland basins

    NASA Astrophysics Data System (ADS)

    De Vicente, G.; Cloetingh, S.; Van Wees, J. D.; Cunha, P. P.

    2011-04-01

    The Iberian microcontinent stands out because of its intense Alpine intraplate deformation. This is reflected in a large number of Cenozoic basins of very different sizes. Most of the contacts between topographic highs and basins are thrust or strike-slip faults. All these basins seem to have undergone a common sedimentary evolution, comprising four stages: initiation of sedimentation, intense syn-tectonic infilling, change from endorheic to exorheic drainage, and accelerated erosion related to fluvial incision. This simple evolutionary model shows a migration from East to West, in which basins are still tectonically active at the Atlantic margin of Iberia. This common evolution is also found in a series of geometrical characteristics, such as the ratio r of length of strike-slip fault and length of thrust fault, that are very similar in both types of basin border settings. Thrust-related basins are mainly associated with segmented pop-downs, whereas the main basins have the characteristics of open-ramp basins. Strike-slip related basins are mostly transpressive structures, although small pull-apart basins are usual along the Vilariça and Messejana faults. For basin areas larger than 100-1000 km 2, a constant r value of 0.6 is found (including the Ebro, Duero, Madrid, Lower Tagus and Badajoz basins). Within the Iberian microcontinent, the total amount of Cenozoic contractional deformation was distributed between strike-slip and thrust faults with an r ratio close to 0.6. However, for small basins this parameter seems to depend on the type of fault, range or deformation belt (pure strike-slip, transtension, transpression, and pop-up) independently of its local tectonic development.

  19. Geology of interior cratonic sag basins

    SciTech Connect

    Leighton, M.W.; Eidel, J.J.; Kolata, D.R.; Oltz, D.F. )

    1990-05-01

    Interior cratonic sag basins are thick accumulations of sediment, generally more or less oval in shape, located entirely in the interiors of continental masses. Some are single-cycle basins and others are characterized by repeated sag cycles or are complex polyhistory basins. Many appear to have developed over ancient rift systems. Interior cratonic sag basins are typified by a dominance of flexural over fault-controlled subsidence, and a low ratio of sediment volume to surface area of the basin. The Baltic, Carpentaria, Illinois, Michigan, Parana, Paris, and Williston basins are examples of interior cratonic sag basins. Tectonics played a dominant role in controlling the shapes and the geometries of the juxtaposed packets of sedimentary sequences. While the mechanics of tectonic control are not clear, evidence suggests that the movements are apparently related to convergence of lithospheric plates and collision and breakup of continents. Whatever the cause, tectonic movements controlled the freeboard of continents, altering base level and initiating new tectono-sedimentologic regimes. Sag basins situated in low latitudes during their development commonly were sites of thick carbonates (e.g., Illinois, Michigan, Williston, and Paris basins). In contrast, siliciclastic sedimentation characterized basins that formed in higher latitudes (e.g., Parana and Carpentaria basins). Highly productive sag basins are characterized by widespread, mature, organic-rich source rocks, large structures, and good seals. Nonproductive basins have one or more of the following characteristics: immature source rocks, leaky plumbing, freshwater flushing, and/or complex geology due to numerous intrusions that inhibit mapping of plays.

  20. Basin stability for chimera states.

    PubMed

    Rakshit, Sarbendu; Bera, Bidesh K; Perc, Matjaž; Ghosh, Dibakar

    2017-05-25

    Chimera states, namely complex spatiotemporal patterns that consist of coexisting domains of spatially coherent and incoherent dynamics, are investigated in a network of coupled identical oscillators. These intriguing spatiotemporal patterns were first reported in nonlocally coupled phase oscillators, and it was shown that such mixed type behavior occurs only for specific initial conditions in nonlocally and globally coupled networks. The influence of initial conditions on chimera states has remained a fundamental problem since their discovery. In this report, we investigate the robustness of chimera states together with incoherent and coherent states in dependence on the initial conditions. For this, we use the basin stability method which is related to the volume of the basin of attraction, and we consider nonlocally and globally coupled time-delayed Mackey-Glass oscillators as example. Previously, it was shown that the existence of chimera states can be characterized by mean phase velocity and a statistical measure, such as the strength of incoherence, by using well prepared initial conditions. Here we show further how the coexistence of different dynamical states can be identified and quantified by means of the basin stability measure over a wide range of the parameter space.

  1. Biogeochemistry of a Suburban Basin

    NASA Astrophysics Data System (ADS)

    McDowell, W. H.; Daley, M. L.; Blumberg, J.

    2002-12-01

    A long-term research effort was recently established in the Lamprey River basin in southeastern New Hampshire. The watershed is largely forested, and has significant amounts of wetlands due to the relatively low topographic relief. Human population growth is rapid, resulting in conversion of forest and agricultural land to housing tracts. The primary focus of the project will be to examine the relationships between land use, land cover and water quality as the watershed continues to increase in population density. A secondary emphasis will be to examine the interactions between hydrologic flow paths, climatic variability, and biogeochemical processes that drive groundwater and surface water quality in the basin. Our initial work has quantified landscape attributes and related them to water quality. Results to date show that small tributary streams are relatively high in nitrogen relative to the main stem of the Lamprey; that human population density drives nitrate concentrations in the basin; and that DOC flux is predicted well by the model of Aitkenhead and McDowell that links DOC flux to watershed C:N ratio.

  2. Basin stability in delayed dynamics

    PubMed Central

    Leng, Siyang; Lin, Wei; Kurths, Jürgen

    2016-01-01

    Basin stability (BS) is a universal concept for complex systems studies, which focuses on the volume of the basin of attraction instead of the traditional linearization-based approach. It has a lot of applications in real-world systems especially in dynamical systems with a phenomenon of multi-stability, which is even more ubiquitous in delayed dynamics such as the firing neurons, the climatological processes, and the power grids. Due to the infinite dimensional property of the space for the initial values, how to properly define the basin’s volume for delayed dynamics remains a fundamental problem. We propose here a technique which projects the infinite dimensional initial state space to a finite-dimensional Euclidean space by expanding the initial function along with different orthogonal or nonorthogonal basis. A generalized concept of basin’s volume in delayed dynamics and a highly practicable calculating algorithm with a cross-validation procedure are provided to numerically estimate the basin of attraction in delayed dynamics. We show potential applicabilities of this approach by applying it to study several representative systems of biological or/and physical significance, including the delayed Hopfield neuronal model with multistability and delayed complex networks with synchronization dynamics. PMID:26907568

  3. Great Basin geoscience data base

    USGS Publications Warehouse

    Raines, Gary L.; Sawatzky, Don L.; Connors, Katherine A.

    1996-01-01

    This CD-ROM serves as the archive for 73 digital GIS data set for the Great Basin. The data sets cover Nevada, eastern California, southeastern Oregon, southern Idaho, and western Utah. Some of the data sets are incomplete for the total area. On the CD-ROM, the data are provided in three formats, a prototype Federal Data Exchange standard format, the ESRI PC ARCVIEW1 format for viewing the data, and the ESRI ARC/INFO export format. Extensive documentation is provided to describe the data, the sources, and data enhancements. The following data are provided. One group of coverages comes primarily from 1:2,000,000-scale National Atlas data and can be assembled for use as base maps. These various forms of topographic information. In addition, public land system data sets are provided from the 1:2,500,000-scale Geologic Map of the United States and 1:500,000-scale geologic maps of Nevada, Oregon, and Utah. Geochemical data from the National Uranium Resource Evaluation (NURE) program are provided for most of the Great Basin. Geophysical data are provided for most of the Great Basin, typically gridded data with a spacing of 1 km. The geophysical data sets include aeromagnetics, gravity, radiometric data, and several derivative products. The thematic data sets include geochronology, calderas, pluvial lakes, tectonic extension domains, distribution of pre-Cenozoic terranes, limonite anomalies, Landsat linear features, mineral sites, and Bureau of Land Management exploration and mining permits.

  4. High Doses of GM-CSF Inhibit Antibody Responses in Rectal Secretions and Diminish Modified Vaccinia Ankara/Simian Immunodeficiency Virus Vaccine Protection in TRIM5α-Restrictive Macaques.

    PubMed

    Kannanganat, Sunil; Wyatt, Linda S; Gangadhara, Sailaja; Chamcha, Venkatesarlu; Chea, Lynette S; Kozlowski, Pamela A; LaBranche, Celia C; Chennareddi, Lakshmi; Lawson, Benton; Reddy, Pradeep B J; Styles, Tiffany M; Vanderford, Thomas H; Montefiori, David C; Moss, Bernard; Robinson, Harriet L; Amara, Rama Rao

    2016-11-01

    We tested, in rhesus macaques, the effects of a 500-fold range of an admixed recombinant modified vaccinia Ankara (MVA) expressing rhesus GM-CSF (MVA/GM-CSF) on the immunogenicity and protection elicited by an MVA/SIV macaque 239 vaccine. High doses of MVA/GM-CSF did not affect the levels of systemic envelope (Env)-specific Ab, but it did decrease the expression of the gut-homing receptor α4β7 on plasmacytoid dendritic cells (p < 0.01) and the magnitudes of Env-specific IgA (p = 0.01) and IgG (p < 0.05) in rectal secretions. The protective effect of the vaccine was evaluated using 12 weekly rectal challenges in rhesus macaques subgrouped by tripartite motif-containing protein 5α (TRIM5α) genotypes that are restrictive or permissive for infection by the challenge virus SIVsmE660. Eight of nine TRIM5α-restrictive animals receiving no or the lowest dose (1 × 10(5) PFU) of MVA/GM-CSF resisted all 12 challenges. In the comparable TRIM5α-permissive group, only 1 of 12 animals resisted all 12 challenges. In the TRIM5α-restrictive animals, but not in the TRIM5α-permissive animals, the number of challenges to infection directly correlated with the magnitudes of Env-specific rectal IgG (r = +0.6) and IgA (r = +0.6), the avidity of Env-specific serum IgG (r = +0.5), and Ab dependent cell-mediated virus inhibition (r = +0.6). Titers of neutralizing Ab did not correlate with protection. We conclude that 1) protection elicited by MVA/SIVmac239 is strongly dependent on the presence of TRIM5α restriction, 2) nonneutralizing Ab responses contribute to protection against SIVsmE660 in TRIM5α-restrictive animals, and 3) high doses of codelivered MVA/GM-CSF inhibit mucosal Ab responses and the protection elicited by MVA expressing noninfectious SIV macaque 239 virus-like particles.

  5. A prime/boost DNA/Modified vaccinia virus Ankara vaccine expressing recombinant Leishmania DNA encoding TRYP is safe and immunogenic in outbred dogs, the reservoir of zoonotic visceral leishmaniasis.

    PubMed

    Carson, Connor; Antoniou, Maria; Ruiz-Argüello, Maria Begoña; Alcami, Antonio; Christodoulou, Vasiliki; Messaritakis, Ippokratis; Blackwell, Jenefer M; Courtenay, Orin

    2009-02-11

    Previous studies demonstrated safety, immunogenicity and efficacy of DNA/modified vaccinia virus Ankara (MVA) prime/boost vaccines expressing tryparedoxin peroxidase (TRYP) and Leishmania homologue of the mammalian receptor for activated C kinase (LACK) against Leishmania major challenge in mice, which was consistent with results from TRYP protein/adjuvant combinations in non-human primates. This study aimed to conduct safety and immunogenicity trials of these DNA/MVA vaccines in dogs, the natural reservoir host of Leishmania infantum, followed-up for 4 months post-vaccination. In a cohort of 22 uninfected outbred dogs, blinded randomised administration of 1000 microg (high dose) or 100 microg (low dose) DNA prime (day 0) and 1x10(8)pfu MVA boost (day 28) was shown to be safe and showed no clinical side effects. High dose DNA/MVA vaccinated TRYP dogs produced statistically higher mean levels of the type-1 pro-inflammatory cytokine IFN-gamma than controls in whole blood assays (WBA) stimulated with the recombinant vaccine antigen TRYP, up to the final sampling at day 126, and in the absence of challenge with Leishmania. TRYP vaccinated dogs also demonstrated significantly higher TRYP-specific total IgG and IgG2 subtype titres than in controls, and positive in vivo intradermal reactions at day 156 in the absence of natural infection, observed in 6/8 TRYP vaccinated dogs. No significant increases in IFN-gamma in LACK-stimulated WBA, or in LACK-specific IgG levels, were detected in LACK vaccinated dogs compared to controls, and only 2/9 LACK vaccinated dogs demonstrated DTH responses at day 156. In all groups, IgG1 subclass responses and antigen-specific stimulation of IL-10 were similar to controls demonstrating an absence of Th2/T(reg) response, as expected in the absence of in vivo restimulation or natural/experimental challenge with Leishmania. These collective results indicate significant antigen-specific type-1 responses and in vivo memory phase cellular immune

  6. Povidone-iodine hand wash and hand rub products demonstrated excellent in vitro virucidal efficacy against Ebola virus and modified vaccinia virus Ankara, the new European test virus for enveloped viruses.

    PubMed

    Eggers, Maren; Eickmann, Markus; Kowalski, Katharina; Zorn, Juergen; Reimer, Karen

    2015-09-17

    The recent Ebola virus (EBOV) epidemic highlights the need for efficacious virucidal products to help prevent infection and limit the spread of Ebola virus disease. However, there is limited data on the efficacy of virucidal products against EBOV, because the virus has a high biosafety level and is only available in a few laboratories worldwide. The virucidal efficacy of antiseptics and disinfectants can be determined using the European Standard EN14476:2013/FprA1:2015. Modified vaccinia virus Ankara (MVA) was introduced in 2014 as a reference virus for the claim 'virucidal active against enveloped viruses for hygienic hand rub and hand wash'. For EBOV, also an enveloped virus, the suitability of MVA as a surrogate needs to be proven. The aim of this study was to test the in vitro efficacy of four povidone iodine (PVP-I) formulations against EBOV: 4% PVP-I skin cleanser; 7.5% PVP-I surgical scrub; 10% PVP-I solution; and 3.2% PVP-I and 78% alcohol solution. The formulations were tested with MVA to define the test conditions, and as a secondary objective the suitability of MVA as a surrogate for enveloped viruses like EBOV was assessed. According to EN14476, a standard suspension test was used for MVA. Large-volume plating was used for EBOV to increase test sensitivity and exclude potential after-effects. All products were tested under clean (0.3 g/L BSA) and dirty (3.0 g/L BSA + 3.0 mL/L erythrocytes) conditions with MVA for 15, 30, and 60 s. The concentration-contact time values obtained with MVA were verified for EBOV. Viral titres of MVA and EBOV were reduced by >99.99% to >99.999% under clean and dirty conditions after application of the test products for 15 seconds. All products showed excellent virucidal efficacy against EBOV, demonstrating the important role PVP-I can play in helping to prevent and limit the spread of Ebola virus disease. The efficacy against both test viruses after 15 s is helpful information for the implementation of guidance for

  7. Virus-Like Particles Displaying Trimeric Simian Immunodeficiency Virus (SIV) Envelope gp160 Enhance the Breadth of DNA/Modified Vaccinia Virus Ankara SIV Vaccine-Induced Antibody Responses in Rhesus Macaques

    PubMed Central

    Iyer, Smita S.; Gangadhara, Sailaja; Victor, Blandine; Shen, Xiaoying; Chen, Xuemin; Nabi, Rafiq; Kasturi, Sudhir P.; Sabula, Michael J.; Labranche, Celia C.; Reddy, Pradeep B. J.; Tomaras, Georgia D.; Montefiori, David C.; Spearman, Paul; Pulendran, Bali; Kozlowski, Pamela A.

    2016-01-01

    ABSTRACT The encouraging results of the RV144 vaccine trial have spurred interest in poxvirus prime-protein boost human immunodeficiency virus (HIV) vaccine modalities as a strategy to induce protective immunity. Because vaccine-induced protective immunity is critically determined by HIV envelope (Env) conformation, significant efforts are directed toward generating soluble trimeric Env immunogens that assume native structures. Using the simian immunodeficiency virus (SIV)-macaque model, we tested the immunogenicity and efficacy of sequential immunizations with DNA (D), modified vaccinia virus Ankara (MVA) (M), and protein immunogens, all expressing virus-like particles (VLPs) displaying membrane-anchored trimeric Env. A single VLP protein boost displaying trimeric gp160 adjuvanted with nanoparticle-encapsulated Toll-like receptor 4/7/8 (TLR4/7/8) agonists, administered 44 weeks after the second MVA immunization, induced up to a 3-fold increase in Env-specific IgG binding titers in serum and mucosa. Importantly, the VLP protein boost increased binding antibody against scaffolded V1V2, antibody-dependent phagocytic activity against VLP-coated beads, and antibody breadth and neutralizing antibody titers against homologous and heterologous tier 1 SIVs. Following 5 weekly intrarectal SIVmac251 challenges, two of seven DNA/MVA and VLP (DM+VLP)-vaccinated animals were completely protected compared to productive infection in all seven DM-vaccinated animals. Vaccinated animals demonstrated stronger acute viral pulldown than controls, but a trend for higher acute viremia was observed in the DM+VLP group, likely due to a slower recall of Gag-specific CD8 T cells. Our findings support immunization with VLPs containing trimeric Env as a strategy to augment protective antibody but underscore the need for optimal engagement of CD8 T cells to achieve robust early viral control. IMPORTANCE The development of an effective HIV vaccine remains a global necessity for preventing HIV

  8. EULAR/PRINTO/PRES criteria for Henoch-Schönlein purpura, childhood polyarteritis nodosa, childhood Wegener granulomatosis and childhood Takayasu arteritis: Ankara 2008. Part I: Overall methodology and clinical characterisation.

    PubMed

    Ruperto, Nicolino; Ozen, Seza; Pistorio, Angela; Dolezalova, Pavla; Brogan, Paul; Cabral, David A; Cuttica, Ruben; Khubchandani, Raju; Lovell, Daniel J; O'Neil, Kathleen M; Quartier, Pierre; Ravelli, Angelo; Iusan, Silvia M; Filocamo, Giovanni; Magalhães, Claudia Saad; Unsal, Erbil; Oliveira, Sheila; Bracaglia, Claudia; Bagga, Arvind; Stanevicha, Valda; Manzoni, Silvia Magni; Pratsidou, Polyxeni; Lepore, Loredana; Espada, Graciela; Kone-Paut, Isabella; Paut, Isabelle Kone; Zulian, Francesco; Barone, Patrizia; Bircan, Zelal; Maldonado, Maria del Rocio; Russo, Ricardo; Vilca, Iris; Tullus, Kjell; Cimaz, Rolando; Horneff, Gerd; Anton, Jordi; Garay, Stella; Nielsen, Susan; Barbano, Giancarlo; Martini, Alberto

    2010-05-01

    To report methodology and overall clinical, laboratory and radiographic characteristics for Henoch-Schönlein purpura (HSP), childhood polyarteritis nodosa (c-PAN), c-Wegener granulomatosis (c-WG) and c-Takayasu arteritis (c-TA) classification criteria. The preliminary Vienna 2005 consensus conference, which proposed preliminary criteria for paediatric vasculitides, was followed by a EULAR/PRINTO/PRES - supported validation project divided into three main steps. Step 1: retrospective/prospective web-data collection for HSP, c-PAN, c-WG and c-TA, with age at diagnosis Ankara 2008 Consensus Conference and statistical evaluation (sensitivity, specificity, area under the curve, kappa-agreement) using as 'gold standard' the final consensus classification or original treating physician diagnosis. A total of 1183/1398 (85%) samples collected were available for analysis: 827 HSP, 150 c-PAN, 60 c-WG, 87 c-TA and 59 c-other. Prevalence, signs/symptoms, laboratory, biopsy and imaging reports were consistent with the clinical picture of the four c-vasculitides. A representative subgroup of 280 patients was blinded to the treating physician diagnosis and classified by a consensus panel, with a kappa-agreement of 0.96 for HSP (95% CI 0.84 to 1), 0.88 for c-WG (95% CI 0.76 to 0.99), 0.84 for c-TA (95% CI 0.73 to 0.96) and 0.73 for c-PAN (95% CI 0.62 to 0.84), with an overall kappa of 0.79 (95% CI 0.73 to 0.84). EULAR/PRINTO/PRES propose validated classification criteria for HSP, c-PAN, c-WG and c-TA, with substantial/almost perfect agreement with the final consensus classification or original treating physician diagnosis.

  9. Safety and immunogenicity of a modified vaccinia Ankara-based HIV-1 vaccine (MVA-B) in HIV-1-infected patients alone or in combination with a drug to reactivate latent HIV-1.

    PubMed

    Mothe, Beatriz; Climent, Nuria; Plana, Montserrat; Rosàs, Miriam; Jiménez, José Luis; Muñoz-Fernández, María Ángeles; Puertas, María C; Carrillo, Jorge; Gonzalez, Nuria; León, Agathe; Pich, Judit; Arnaiz, Joan Albert; Gatell, Jose M; Clotet, Bonaventura; Blanco, Julià; Alcamí, José; Martinez-Picado, Javier; Alvarez-Fernández, Carmen; Sánchez-Palomino, Sonsoles; Guardo, Alberto C; Peña, José; Benito, José M; Rallón, Norma; Gómez, Carmen E; Perdiguero, Beatriz; García-Arriaza, Juan; Esteban, Mariano; López Bernaldo de Quirós, Juan Carlos; Brander, Christian; García, Felipe

    2015-01-01

    The safety, immunogenicity, impact on the latent reservoir and rebound of viral load after therapeutic HIV-1 vaccination with recombinant modified vaccinia Ankara-based (MVA-B) HIV-1 vaccine expressing monomeric gp120 and the fused Gag-Pol-Nef polyprotein of clade B with or without a drug to reactivate latent HIV-1 (disulfiram) were assessed. HIV-1-infected patients were randomized to receive three injections of MVA-B (n = 20) or placebo (n = 10). Twelve patients (eight who received vaccine and four who were given placebo) received a fourth dose of MVA-B followed by 3 months of disulfiram. Combined ART (cART) was discontinued 8 weeks after the last dose of MVA-B. Clinical Trials.gov identifier: NCT01571466. MVA-B was safe and well tolerated. A minor, but significant, increase in the T cell responses targeting vaccine inserts of Gag was observed [a median of 290, 403 and 435 spot-forming-cells/10(6) PBMCs at baseline, after two vaccinations and after three vaccinations, respectively; P = 0.02 and P = 0.04]. After interruption of cART, a modest delay in the rebound of the plasma viral load in participants receiving vaccine but not disulfiram was observed compared with placebo recipients (P = 0.01). The dynamics of the viral load rebound did not change in patients receiving MVA-B/disulfiram. No changes in the proviral reservoir were observed after disulfiram treatment. MVA-B vaccination was a safe strategy to increase Gag-specific T cell responses in chronically HIV-1-infected individuals, but it did not have a major impact on the latent reservoir or the rebound of plasma viral load after interruption of cART when given alone or in combination with disulfiram. © The Author 2015. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  10. Rapid expansion of CD8+ T cells in wild-type and type I interferon receptor-deficient mice correlates with protection after low-dose emergency immunization with modified vaccinia virus Ankara.

    PubMed

    Volz, Asisa; Langenmayer, Martin; Jany, Sylvia; Kalinke, Ulrich; Sutter, Gerd

    2014-09-01

    Immunization with modified vaccinia virus Ankara (MVA) can rapidly protect mice against lethal ectromelia virus (ECTV) infection, serving as an experimental model for severe systemic infections. Importantly, this early protective capacity of MVA vaccination completely depends on virus-specific cytotoxic CD8(+) T cell responses. We used MVA vaccination in the mousepox challenge model using ECTV infection to investigate the previously unknown factors required to elicit rapid protective T cell immunity in normal C57BL/6 mice and in mice lacking the interferon alpha/beta receptor (IFNAR(-/-)). We found a minimal dose of 10(5) PFU of MVA vaccine fully sufficient to allow robust protection against lethal mousepox, as assessed by the absence of disease symptoms and failure to detect ECTV in organs from vaccinated animals. Moreover, MVA immunization at low dosage also protected IFNAR(-/-) mice, indicating efficient activation of cellular immunity even in the absence of type I interferon signaling. When monitoring for virus-specific CD8(+) T cell responses in mice vaccinated with the minimal protective dose of MVA, we found significantly enhanced levels of antigen-specific T cells in animals that were MVA vaccinated and ECTV challenged compared to mice that were only vaccinated. The initial priming of naive CD8(+) T cells by MVA immunization appears to be highly efficient and, even at low doses, mediates a rapid in vivo burst of pathogen-specific T cells upon challenge. Our findings define striking requirements for protective emergency immunization against severe systemic infections with orthopoxviruses. We demonstrate that single-shot low-dose immunizations with vaccinia virus MVA can rapidly induce T cell-mediated protective immunity against lethal orthopoxvirus infections. Our data provide new evidence for an efficient protective capacity of vaccination with replication-deficient MVA. These data are of important practical relevance for public health, as the effectiveness

  11. Rapid Expansion of CD8+ T Cells in Wild-Type and Type I Interferon Receptor-Deficient Mice Correlates with Protection after Low-Dose Emergency Immunization with Modified Vaccinia Virus Ankara

    PubMed Central

    Volz, Asisa; Langenmayer, Martin; Jany, Sylvia; Kalinke, Ulrich

    2014-01-01

    ABSTRACT Immunization with modified vaccinia virus Ankara (MVA) can rapidly protect mice against lethal ectromelia virus (ECTV) infection, serving as an experimental model for severe systemic infections. Importantly, this early protective capacity of MVA vaccination completely depends on virus-specific cytotoxic CD8+ T cell responses. We used MVA vaccination in the mousepox challenge model using ECTV infection to investigate the previously unknown factors required to elicit rapid protective T cell immunity in normal C57BL/6 mice and in mice lacking the interferon alpha/beta receptor (IFNAR−/−). We found a minimal dose of 105 PFU of MVA vaccine fully sufficient to allow robust protection against lethal mousepox, as assessed by the absence of disease symptoms and failure to detect ECTV in organs from vaccinated animals. Moreover, MVA immunization at low dosage also protected IFNAR−/− mice, indicating efficient activation of cellular immunity even in the absence of type I interferon signaling. When monitoring for virus-specific CD8+ T cell responses in mice vaccinated with the minimal protective dose of MVA, we found significantly enhanced levels of antigen-specific T cells in animals that were MVA vaccinated and ECTV challenged compared to mice that were only vaccinated. The initial priming of naive CD8+ T cells by MVA immunization appears to be highly efficient and, even at low doses, mediates a rapid in vivo burst of pathogen-specific T cells upon challenge. Our findings define striking requirements for protective emergency immunization against severe systemic infections with orthopoxviruses. IMPORTANCE We demonstrate that single-shot low-dose immunizations with vaccinia virus MVA can rapidly induce T cell-mediated protective immunity against lethal orthopoxvirus infections. Our data provide new evidence for an efficient protective capacity of vaccination with replication-deficient MVA. These data are of important practical relevance for public health, as

  12. The geologic history of Margaritifer basin, Mars

    USGS Publications Warehouse

    Salvatore, M. R.; Kraft, M. D.; Edwards, Christopher; Christensen, P.R.

    2016-01-01

    In this study, we investigate the fluvial, sedimentary, and volcanic history of Margaritifer basin and the Uzboi-Ladon-Morava (ULM) outflow channel system. This network of valleys and basins spans more than 8000 km in length, linking the fluvially dissected southern highlands and Argyre Basin with the northern lowlands via Ares Vallis. Compositionally, thermophysically, and morphologically distinct geologic units are identified and are used to place critical relative stratigraphic constraints on the timing of geologic processes in Margaritifer basin. Our analyses show that fluvial activity was separated in time by significant episodes of geologic activity, including the widespread volcanic resurfacing of Margaritifer basin and the formation of chaos terrain. The most recent fluvial activity within Margaritifer basin appears to terminate at a region of chaos terrain, suggesting possible communication between surface and subsurface water reservoirs. We conclude with a discussion of the implications of these observations on our current knowledge of Martian hydrologic evolution in this important region.

  13. Exergetic efficiency of basin type solar still

    NASA Astrophysics Data System (ADS)

    Layek, Apurba

    2017-06-01

    Simplicity of solar distillation system makes it very attractive, but the yield as well as the thermal efficiency is very low. Different types of absorbing materials e.g. black ink, black dye solution in basin water and black toner on water surface were used to evaluate their effect on the yield. As the absorbing material absorbs more solar radiation and increases basin water temperature, increases yield as well as energy efficiency. To enhance the thermal performance, and to have the insight of thermal losses; exergetic analysis of solar still is done. The maximum energy efficiency obtained for basin water having these absorber material on basin water are about 41.3 %, 43.42 % and 45.79 %, while exergetic efficiency values are 5.91%, 6.34 % and 7.10 % respectively. Exergy destruction from basin liner is the highest compared to that from basin water and glazing.

  14. Biological science in the Great Basin

    USGS Publications Warehouse

    ,

    2005-01-01

    The Great Basin is an expanse of desert and high moun-tains situated between the Rocky Mountains and the Sierra Nevada of the western United States. The most explicit description of the Great Basin is that area in the West where surface waters drain inland. In other words, the Great Basin is comprised of many separate drainage areas - each with no outlet. What at first glance may appear as only a barren landscape, the Great Basin upon closer inspection reveals island mountains, sagebrush seas, and intermittent aquatic habitats, all teeming with an incredible number and variety of plants and animals. Biologists at the USGS are studying many different species and ecosystems in the Great Basin in order to provide information about this landscape for policy and land-management decision-making. The following stories represent a few of the many projects the USGS is conducting in the Great Basin.

  15. The geologic history of Margaritifer basin, Mars

    NASA Astrophysics Data System (ADS)

    Salvatore, M. R.; Kraft, M. D.; Edwards, C. S.; Christensen, P. R.

    2016-03-01

    In this study, we investigate the fluvial, sedimentary, and volcanic history of Margaritifer basin and the Uzboi-Ladon-Morava outflow channel system. This network of valleys and basins spans more than 8000 km in length, linking the fluvially dissected southern highlands and Argyre basin with the northern lowlands via Ares Vallis. Compositionally, thermophysically, and morphologically distinct geologic units are identified and are used to place critical relative stratigraphic constraints on the timing of geologic processes in Margaritifer basin. Our analyses show that fluvial activity was separated in time by significant episodes of geologic activity, including the widespread volcanic resurfacing of Margaritifer basin and the formation of chaos terrain. The most recent fluvial activity within Margaritifer basin appears to terminate at a region of chaos terrain, suggesting possible communication between surface and subsurface water reservoirs. We conclude with a discussion of the implications of these observations on our current knowledge of Martian hydrologic evolution in this important region.

  16. Light-toned Mounds in Gorgonum Basin

    NASA Image and Video Library

    2017-06-29

    This image from NASA's Mars Reconnaissance Orbiter shows Gorgonum Basin, one of several large basins within the Terra Sirenum region of Mars. Each basin has light-toned mounds, many of which contain clays. Scientists think that Terra Sirenum once had a large lake during an epoch called the Late Noachian/Early Hesperian, and each basin filled with sediments. The water within the lake may have altered these sediments to form the clays we now observe from orbit. Ma'adim Vallis, which drains into Gusev Crater where the Spirit rover landed, drained the water from this ancient lake. Why the basin floors exhibit mounds similar to chaos regions on Mars is unknown, but could be the result of collapse and subsequent erosion within the basins. https://photojournal.jpl.nasa.gov/catalog/PIA21767

  17. Thermal evolution of sedimentary basins in Alaska

    USGS Publications Warehouse

    Johnsson, Mark J.; Howell, D.G.

    1996-01-01

    The complex tectonic collage of Alaska is reflected in the conjunction of rocks of widely varying thermal maturity. Indicators of the level of thermal maturity of rocks exposed at the surface, such as vitrinite reflectance and conodont color alteration index, can help constrain the tectonic evolution of such complex regions and, when combined with petrographic, modern heat flow, thermogeochronologic, and isotopic data, allow for the detailed evaluation of a region?s burial and uplift history. We have collected and assembled nearly 10,000 vitrinite-reflectance and conodont-color-alteration index values from the literature, previous U.S. Geological Survey investigations, and our own studies in Alaska. This database allows for the first synthesis of thermal maturity on a broadly regional scale. Post-accretionary sedimentary basins in Alaska show wide variability in terms of thermal maturity. The Tertiary interior basins, as well as some of the forearc and backarc basins associated with the Aleutian Arc, are presently at their greatest depth of burial, with immature rocks exposed at the surface. Other basins, such as some backarc basins on the Alaska Peninsula, show higher thermal maturities, indicating modest uplift, perhaps in conjunction with higher geothermal gradients related to the arc itself. Cretaceous ?flysch? basins, such as the Yukon-Koyukuk basin, are at much higher thermal maturity, reflecting great amounts of uplift perhaps associated with compressional regimes generated through terrane accretion. Many sedimentary basins in Alaska, such as the Yukon-Koyukuk and Colville basins, show higher thermal maturity at basin margins, perhaps reflecting greater uplift of the margins in response to isostatic unloading, owing to erosion of the hinterland adjacent to the basin or to compressional stresses adjacent to basin margins.

  18. Sandakan basin prospects rise following modern reappraisal

    SciTech Connect

    Walker, T. )

    1993-05-10

    Borneo is fringed by six large Neogene deltaic basins, all but one producing substantial hydrocarbons. The Sandakan basin off Northeast Borneo is the exception, but the latest exploration results suggest that it will not remain so. The paper describes its complex history; its exploration history; exploration results; stratigraphy; and geologic structures and traps. The Sandakan basin is conservatively estimated to contain 1 billion bbl of oil and 3tcf of gas.

  19. Reserve estimates in western basins. Part 2: Piceance Basin

    SciTech Connect

    1995-10-01

    This study characterizes an extremely large gas resource located in low permeability, sandstone reservoirs of the Mesaverde group in the Piceance Basin, Colorado. Total in place resource is estimated at 307.3 Tcf. Via application of geologic, engineering and economic criteria, the portion of this resource potentially recoverable as reserves is estimated. Those volumes estimated include probable, possible and potential categories and total 5.8 Tcf as a mean estimate of recoverable gas for all plays considered in the basin. About 82.6% of the total evaluated resource is contained within sandstones that have extremely poor reservoir properties with permeabilities considered too low for commerciality using current frac technology. Cost reductions and technology improvements will be required to unlock portions of this enormous resource. Approximately 2.7% of the total resource is contained within sandstone reservoirs which do not respond to massive hydraulic fracture treatments, probably due to their natural lenticular nature. Approximately 6.8% of the total resource is located in deeply buried settings below deepest established production. Approximately 7.9% of the total resource is considered to represent tight reservoirs that may be commercially exploited using today`s hydraulic fracturing technology. Recent technology advances in hydraulic fracturing practices in the Piceance Basin Mesaverde has resulted in a marked improvement in per well gas recovery which, where demonstrated, has been incorporated into the estimates provided in this report. This improvement is so significant in changing the risk-reward relationship that has historically characterized this play, that previously uneconomic areas and resources will graduate to the economically exploitable category. 48 refs., 96 figs., 18 tabs.

  20. Reserves in western basins: Part 1, Greater Green River basin

    SciTech Connect

    Not Available

    1993-10-01

    This study characterizes an extremely large gas resource located in low permeability, overpressured sandstone reservoirs located below 8,000 feet drill depth in the Greater Green River basin, Wyoming. Total in place resource is estimated at 1,968 Tcf. Via application of geologic, engineering and economic criteria, the portion of this resource potentially recoverable as reserves is estimated. Those volumes estimated include probable, possible and potential categories and total 33 Tcf as a mean estimate of recoverable gas for all plays considered in the basin. Five plays (formations) were included in this study and each was separately analyzed in terms of its overpressured, tight gas resource, established productive characteristics and future reserves potential based on a constant $2/Mcf wellhead gas price scenario. A scheme has been developed to break the overall resource estimate down into components that can be considered as differing technical and economic challenges that must be overcome in order to exploit such resources: in other words, to convert those resources to economically recoverable reserves. Total recoverable reserves estimates of 33 Tcf do not include the existing production from overpressured tight reservoirs in the basin. These have estimated ultimate recovery of approximately 1.6 Tcf, or a per well average recovery of 2.3 Bcf. Due to the fact that considerable pay thicknesses can be present, wells can be economic despite limited drainage areas. It is typical for significant bypassed gas to be present at inter-well locations because drainage areas are commonly less than regulatory well spacing requirements.

  1. Late Paleozoic structural evolution of Permian basin

    SciTech Connect

    Ewing, T.E.

    1984-04-01

    The southern Permian basin is underlain by the NNW-trending Central Basin disturbed belt of Wolfcamp age (Lower Permian), the deep Delaware basin to its west, and the shallower Midland basin to its eat. The disturbed belt is highly segmented with zones of left-lateral offset. Major segments from south to north are: the Puckett-Grey Ranch zone; the Fort Stockton uplift; the Monahans transverse zone; the Andector ridges and the Eunice ridge; the Hobbs transverse zone; and the Tatum ridges, which abut the broad Roosevelt uplift to the north. The disturbed belt may have originated along rift zones of either Precambrian or Cambrian age. The extent of Lower and Middle Pennsylvanian deformation is unclear; much of the Val Verde basin-Ozona arch structure may have formed then. The main Wolfcamp deformation over thrust the West Texas crustal block against the Delaware block, with local denudation of the uplifted edge and eastward-directed backthrusting into the Midland basin. Latter in the Permian, the area was the center of a subcontinental bowl of subsidence - the Permian basin proper. The disturbed belt formed a pedestal for the carbonate accumulations which created the Central Basin platform. The major pre-Permian reservoirs of the Permian basin lie in large structural and unconformity-bounded traps on uplift ridges and domes. Further work on the regional structural style may help to predict fracture trends, to assess the timing of oil migration, and to evaluate intrareservoir variations in the overlying Permian giant oil fields.

  2. Petroleum system of the Gippsland Basin, Australia

    USGS Publications Warehouse

    Bishop, Michele G.

    2000-01-01

    The Gippsland Basin Province 3930, located on the southeastern coast of Australia, is formed from two successive failed rifts that developed into a passive margin during the Cretaceous. Formation of this basin is related to the break up of Gondwana, which resulted in the separation of Antarctica from Australia, and the separation of the New Zealand and Lord Howe Rise continental crust from Australia. Coals and coaly shales of Late Cretaceous through Eocene age are the source rocks for oil and gas that accumulated predominantly in anticlinal traps. The basin was Australia?s major producing basin until 1996 when daily oil/condensate production from the North West Shelf surpassed it.

  3. Basin Management under the Global Climate Change (Take North-East Asia Heilongjiang -Amur Basin and Taihu Basin For Example)

    NASA Astrophysics Data System (ADS)

    Liu, S.; Zhou, Z.; Zhong, G.; Zhang, X.

    2015-12-01

    The impact of global climate change on environment and society causes increasingly concern in different countries around the world. The main climate characteristic values, such as precipitation and temperature, have been changed, which leads to the variation of water resources, especially in large basins. Heilongjiang-Amur Basin and Taihu Basin are two large and important basins in China with large area and population. As global climate change and human activities have siganificant impacts on hydrology and water resources in two basins, the analysis of climate change are of great value. In this study, in Heilongjiang-Amur Basin, precipitation and temperature are investigated and their variation are predicted. And in Taihu Basin, precipitation including plum rain and typhoon, are studied and the variation trend of precipitation is predicted. Hence, the impacts of global climate change are assessed. From the result, it shows that the average temperature will continue to increase, and the precipitation will reduce first and then turn to increase in these two basins. It demonstrates that the water resources have been affected a lot by climate change as well as human activities. And these conclusions are provided as reference for policy makers and basin authorities in water resources management and natural hazards mitigation. Meanwhile, according to basins' particualr characters, the suggestions to future water resources management in two basins are given, and more scientific, comprehensive and sustained managements are required. Especially, in Heilongjiang-Amur River, which is a boundary river between China and Russia, it is very essential to enhance the cooperation between two countries.

  4. Seismic Characterization of the Jakarta Basin

    NASA Astrophysics Data System (ADS)

    Cipta, A.; Saygin, E.; Cummins, P. R.; Masturyono, M.; Rudyanto, A.; Irsyam, M.

    2015-12-01

    Jakarta, Indonesia, is home to more than 10 million people. Many of these people live in seismically non-resilient structures in an area that historical records suggest is prone to earthquake shaking. The city lies in a sedimentary basin composed of Quaternary alluvium that experiences rapid subsidence (26 cm/year) due to groundwater extraction. Forecasts of how much subsidence may occur in the future are dependent on the thickness of the basin. However, basin geometry and sediment thickness are poorly known. In term of seismic hazard, thick loose sediment can lead to high amplification of seismic waves, of the kind that led to widespread damage in Mexico city during the Michoacan Earthquake of 1985. In order to characterize basin structure, a temporary seismograph deployment was undertaken in Jakarta in Oct 2013- Jan 2014. A total of 96 seismic instrument were deployed throughout Jakarta were deployed throughout Jakarta at 3-5 km spacing. Ambient noise tomography was applied to obtain models of the subsurface velocity structure. Important key, low velocity anomalies at short period (<8s) correspond to the main sedimentary sub-basins thought to be present based on geological interpretations of shallow stratigraphy in the Jakarta Basin. The result shows that at a depth of 300 m, shear-wave velocity in the northern part (600 m/s) of the basin is lower than that in the southern part. The most prominent low velocity structure appears in the northwest of the basin, down to a depth of 800 m, with velocity as low as 1200 m/s. This very low velocity indicates the thickness of sediment and the variability of basin geometry. Waveform computation using SPECFEM2D shows that amplification due to basin geometry occurs at the basin edge and the thick sediment leads to amplification at the basin center. Computation also shows the longer shaking duration occurrs at the basin edge and center of the basin. The nest step will be validating the basin model using earthquake events

  5. Basin-scale relations via conditioning

    USGS Publications Warehouse

    Troutman, B.M.; Karlinger, M.R.; Guertin, D.P.

    1989-01-01

    A rainfall-runoff model is used in conjunction with a probabilistic description of the input to this model to obtain simple regression-like relations for basin runoff in terms of basin and storm characteristics. These relations, similar to those sought in regionalization studies, are computed by evaluating the conditional distribution of model output given basin and storm characteristics. This method of conditioning provides a general way of examining model sensitivity to various components of model input. The resulting relations may be expected to resemble corresponding relations obtained by regionalization using actual runoff to the extent that the rainfall-runoff model and the model input specification are physically realistic. The probabilistic description of model input is an extension of so-called "random-model" of channel networks and involves postulating an ensemble of basins and associated probability distributions that mimic the variability of basin characteristics seen in nature. Application is made to small basins in the State of Wyoming. Parameters of the input variable distribution are estimated using data from Wyoming, and basin-scale relations are estimated both, parametrically and nonparametrically using model-generated runoff from simulated basins. Resulting basin-scale relations involving annual flood quantiles are in reasonable agreement with those presented in a previous regionalization study, but error estimates are smaller than those in the previous study, an artifact of the simplicity of the rainfall-runoff model used in this paper. We also obtain relations for peak of the instantaneous unit hydrograph which agree fairly well with theoretical relations given in the literature. Finally, we explore the issues of sensitivity of basin-scale, relations and error estimates to parameterization of the model input probability distribution and of how this sensitivity is related to making inferences about a particular ungaged basin. ?? 1989 Springer-Verlag.

  6. Cenozoic evolution of San Joaquin basin, California

    SciTech Connect

    Bartow, J.A.

    1988-03-01

    The Neogene San Joaquin basin in the southern part of the 700-km long Great Valley of California is a successor to a late Mesozoic and earliest Tertiary forearc basin. The transition from forearc basin to the more restricted Neogene marine basin occurred principally during the Paleogene as the plate tectonic setting changed from oblique convergence to normal convergence, and finally to the initiation of tangential (transform) movement near the end of the Oligocene. Regional-scale tectonic events that affected the basin include: (1) clockwise rotation of the southernmost Sierra Nevada, and large-scale en echelon folding in the southern Diablo Range, both perhaps related to Late Cretaceous and early Tertiary right slip on the proto-San-Andreas fault; (2) regional uplift of southern California in the Oligocene that resulted from the subduction of the Pacific-Farallon spreading ridge: (3) extensional tectonism in the Basin and Range province, particularly in the Miocene; (4) wrench tectonism adjacent to the San Andreas fault in the Neogene; (5) northeastward emplacement of a wedge of the Franciscan complex at the west side of the Sierran block, with associated deep-seated thrusting in the late Cenozoic; and (6) the accelerated uplift of the Sierra Nevada beginning in the late Miocene. Neogene basin history was controlled principally by the tectonic effects of the northwestward migration of the Mendocino triple junction along the California continental margin and by the subsequent wrench tectonism associated with the San Andreas fault system. East-west compression in the basin, resulting from extension in the Basin and Range province was an important contributing factor to crustal shortening at the west side of the valley. Analysis of the sedimentary history of the basin, which was controlled to some extent by eustatic sea level change, enables reconstruction of the basin paleogeography through the Cenozoic.

  7. Stratigraphic Signatures of Forearc Basin Formation Mechanisms

    NASA Astrophysics Data System (ADS)

    Mannu, U.; Ueda, K.; Gerya, T.; Willett, S.; Strasser, M.

    2014-12-01

    Forearc basins are loci of active sedimentation above the landward portion of accretionary prisms. Although these basins typically remain separated from the frontal prism by a forearc high, their evolution has a significant impact on the structure and deformation of the entire wedge. Formation of forearc basins has been proposed as a consequence of changes in wedge stability due to an increase of slab dip in subduction zones. Another hypothesis attributes this to higher hinterland sedimentation, which causes the rear of the wedge to stabilize and eventually develop a forearc basin. Basin stratigraphic architecture, revealed by high-resolution reflection seismic data and borehole data allows interpretation of structural development of the accretionary prism and associated basins with the goal of determining the underlying driving mechanism(s) of basin formation. In this study we supplement data interpretation with thermo-mechanical numerical models including high-resolution isochronal surface tracking to visualize the developing stratigraphy of basins that develop in subduction zone and wedge dynamic models. We use a dynamic 2D thermo mechanical model incorporating surface processes, strain weakening and sediment subduction. The model is a modification of I2VIS model, which is based on conservative, fully staggered finite differences and a non-diffusive marker- in-cell technique capable of modelling mantle convection. In the model different driving mechanisms for basin formation can be explored. Stratigraphic simulations obtained by isochronal surface tracking are compared to reflection pattern and stratigraphy of seismic and borehole data, respectively. Initial results from a model roughly representing the Nankai Trough Subduction Zone offshore Japan are compared to available seismic and Integrated Ocean Drilling (IODP) data. A calibrated model predicting forearc basin stratigraphy will be used to discern the underlying process of basins formation and wedge

  8. Medical Libraries From Ankara To London

    PubMed Central

    Kovacs, Helen

    1967-01-01

    Thirteen European libraries were visited and are described with special attention given to the Turkish and Hungarian library systems. Information and personal impressions give insight into European ideas of librarianship. PMID:6055865

  9. Thermal regimes of Malaysian sedimentary basins

    SciTech Connect

    Abdul Halim, M.F. )

    1994-07-01

    Properly corrected and calibrated thermal data are important in estimating source-rock maturation, diagenetics, evolution of reservoirs, pressure regimes, and hydrodynamics. Geothermal gradient, thermal conductivity, and heat flow have been determined for the sedimentary succession penetrated by exploratory wells in Malaysia. Geothermal gradient and heat-flow maps show that the highest average values are in the Malay Basin. The values in the Sarawak basin are intermediate between those of the Malay basin and the Sabah Basin, which contains the lowest average values. Temperature data were analyzed from more than 400 wells. An important parameter that was studied in detail is the circulation time. The correct circulation time is essential in determining the correct geothermal gradient of a well. It was found that the most suitable circulation time for the Sabah Basin is 20 hr, 30 hr for the Sarawak Basin and 40 hr for the Malay Basin. Values of thermal conductivity, determined from measurement and calibrated calculations, were grouped according to depositional units and cycles in each basin.

  10. Scientific Review of Great Basin Wildfire Issues

    USDA-ARS?s Scientific Manuscript database

    The University Nevada Reno, College of Agriculture and Resource Concepts Inc., co-sponsored a Great Basin Wildfire Forum in September 2007 to address a “Scientific Review of the Ecological and Management History of Great Basin Natural Resources and Recommendations to Achieve Ecosystem Restoration”. ...

  11. Scientific review of great basin wildfire issues

    USDA-ARS?s Scientific Manuscript database

    The University Nevada Reno, College of Agriculture and Resource Concepts Inc., co-sponsored a Great Basin Wildfire Forum in September 2007 to address a “Scientific Review of the Ecological and Management History of Great Basin Natural Resources and Recommendations to Achieve Ecosystem Restoration”. ...

  12. African sedimentary basins - Tectonic controls on prospectivity

    SciTech Connect

    Bunter, M.A.G.; Crossley, R.; Hammill, M.; Jones, P.W.; Morgan, R.K.; Needham, D.T.; Spaargaren, F.A. )

    1991-03-01

    An important prerequisite for the evaluation of any sedimentary basin is the understanding of its regional tectonic setting. This is especially so in the underexplored regions of Africa. The majority of African sedimentary basins developed in an extensional setting although some have undergone subsequent compressional or transpressional deformation. The geometry and evolution of these basins is often influenced by basement structure. The extensional phase of basin development controls not only the distribution of syn-rift sediments but also the magnitude of post-rift regional subsidence and the preservation or removal of pre-rift sediments. This has important consequences for exploration models of syn-rift and pre-rift source rocks and reservoirs. Post-rift basin inversion and uplift provide crucial controls on the preservation of mature source rocks and quality of reservoirs. The distribution, nature, timing, and possible mechanisms of this uplift in Africa will be addressed. The hydrocarbon prospectivity of African basis appears to be highly variable although the limited exploration of some regions makes the exact extent of this variability unclear. Basins considered potentially prospective range from late Precambrian to Tertiary in age. The various tectonic controls outlined above, and criteria for the evaluation of underexplored areas, will be demonstrated by reference to basins studied by The Robertson Group. Examples described include basins from Bagon, Angola, Namibia, East Africa, Tertiary Rift and Karoo Rifts, and North Africa (Sudan, Egypt, Algeria, and Morocco).

  13. Water quality in the eastern Iowa basins

    USGS Publications Warehouse

    Kalkhoff, Stephen J.; Barnes, Kymm K.; Becher, Kent D.; Savoca, Mark E.; Schnoebelen, Douglas J.; Sadorf, Eric M.; Porter, Stephen D.; Sullivan, Daniel J.; Creswell, John

    2001-01-01

    The Eastern Iowa Basins Study Unit includes the Wapsipinicon, Cedar, Iowa, and Skunk River basins and covers approximately 19,500 square miles in eastern Iowa and southern Minnesota. More than 90 percent of the land in the study unit is used for agricultural purposes. Forested areas account for only 4 percent of the land area.

  14. Frontier sedimentary basins of New Zealand region

    SciTech Connect

    Beggs, J.M. )

    1991-03-01

    Petroleum-prospective basins of New Zealand began to form by mid-Cretaceous rifting of crustal elements previously assembled at the Gondwana continental margin. During the latest Cretaceous-early Cenozoic New Zealand separated from Australia and Antarctica by sea-floor spreading. An overall transgression in widely recorded in this post-rift phase, with decreasing clastic sediment supply as land area and relief were reduced. Mid-Cenozoic initiation of the modern plate boundary has resulted in uplift of mountain ranges, subsidence and filling of troughs, progradation of the shelf, and common reactivation or eversion of older structures. Petroleum potential of less explored basins can be compared to the productive Taranki basin. Source rocks are coal-rich deposits of the rift phase, also developed in Great South, Canterbury/Chatham, Western Southland, West Coast, and Northland basins. A different source contributes to oil and gas seeps on the East Coast, a continental margin during Late Cretaceous. The main reservoirs of Taranaki are early Cenozoic coastal and fluvial sands, also present in Great South, Canterbury, and West Coast and possibly other basins. Other Taranaki reservoirs include mid-Cenozoic limestone and Miocene turbidites, which are widespread in most other basins. Pliocene limestones have excellent reservoir potential on the East Coast. Late Cenozoic tectonics, essential to trap development and significant for maturation in Taranaki, have created similar structures in basins near the plate boundary but are less significant in the development of Great South, eastern Canterbury/Chatham, and Northland basins.

  15. Gila River Basin Native Fishes Conservation Program

    Treesearch

    Doug Duncan; Robert W. Clarkson

    2013-01-01

    The Gila River Basin Native Fishes Conservation Program was established to conserve native fishes and manage against nonnative fishes in response to several Endangered Species Act biological opinions between the Bureau of Reclamation and the U.S. Fish and Wildlife Service on Central Arizona Project (CAP) water transfers to the Gila River basin. Populations of some Gila...

  16. 33 CFR 401.48 - Turning basins.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Turning basins. 401.48 Section 401.48 Navigation and Navigable Waters SAINT LAWRENCE SEAWAY DEVELOPMENT CORPORATION, DEPARTMENT OF TRANSPORTATION SEAWAY REGULATIONS AND RULES Regulations Seaway Navigation § 401.48 Turning basins. No vessel...

  17. Construction of sediment budgets for drainage basins

    Treesearch

    William E. Dietrich; Thomas Dunne; Neil F. Humphrey; Leslie M. Reid

    1982-01-01

    Abstract - A sediment budget for a drainage basin is a quantitative statement of the rates of production, transport, and discharge of detritus. To construct a sediment budget for a drainage basin, one must integrate the temporal and spatial variations of transport and storage processes. This requires: recognition and quantification of transport processes, recognition...

  18. Oil migration pattern in the Sirte Basin

    SciTech Connect

    Roohi, M.; Aburawi, R.M.

    1995-08-01

    Sirte Basin is an asymmetrical cratonic basin, situated in the north-central part of Libya. It covers an area of over 350,000km{sup 2} and is one of the most prolific oil-producing basins in the world. Sirte Basin is divided into large NW-SE trending sub-parallel platforms and troughs bounded by deep seated syndepositional normal faults. A very unique combination of thick sediments with rich source rocks in the troughs vs. thinner sediments with prolific reservoir rocks on the platforms accounts for the productivity of the basin. Analysis of oil migration pattern in the Sirte Basin will certainly help to discover the remaining reserves, and this can only be achieved if the important parameter of structural configuration of the basin at the time of oil migration is known. The present paper is an attempt to analyse the time of oil migration, to define the structural picture of the 4 Basin during the time of migration and to delineate the most probable connecting routes between the hydrocarbon kitchens and the oil fields.

  19. Basin wildrye: the forgotten grass revisited

    USDA-ARS?s Scientific Manuscript database

    Basin wildrye was once a very abundant and widely occurring species throughout the landscapes of northern Nevada. When Captain Simpson, of the topographical Engineers, explored the route for a wagon road across the central Great Basin he marveled at the grass in the valley bottoms that reached to h...

  20. Surface ozone in the Lake Tahoe Basin

    Treesearch

    Joel D. Burley; Sandra Theiss; Andrzej Bytnerowicz; Alan Gertler; Susan Schilling; Barbara Zielinska

    2015-01-01

    Surface ozone (O3) concentrations were measured in and around the Lake Tahoe Basin using both active monitors (2010) and passive samplers (2002, 2010). The 2010 data from active monitors indicate average summertime diurnal maxima of approximately 50–55 ppb. Some site-to-site variability is observed within the Basin during the well-mixed hours of...

  1. Wyoming Basin Rapid Ecoregional Assessment

    USGS Publications Warehouse

    Carr, Natasha B.; Means, Robert E.

    2013-01-01

    The overall goal of the Wyoming Basin Rapid Ecoregional Assessment (REA) is to provide information that supports regional planning and analysis for the management of ecological resources. The REA provides an assessment of baseline ecological conditions, an evaluation of current risks from drivers of ecosystem change (including energy development, fire, and invasive species), and a predictive capacity for evaluating future risks (including climate change). Additionally, the REA may be used for identifying priority areas for conservation or restoration and for assessing cumulative effects of multiple land uses. The Wyoming Basin REA will address Management Questions developed by the Bureau of Land Management and other agency partners for 8 major biomes and 19 species or species assemblages. The maps developed for addressing Management Questions will be integrated into overall maps of landscape-level ecological values and risks. The maps can be used to address the goals of the REA at a number of levels: for individual species, species assemblages, aquatic and terrestrial systems, and for the entire ecoregion. This allows flexibility in how the products of the REA are compiled to inform planning and management actions across a broad range of spatial scales.

  2. Basins in ARC-continental collisions

    USGS Publications Warehouse

    Draut, Amy E.; Clift, Peter D.; Busby, Cathy; Azor, Antonio

    2012-01-01

    Arc-continent collisions occur commonly in the plate-tectonic cycle and result in rapidly formed and rapidly collapsing orogens, often spanning just 5-15 My. Growth of continental masses through arc-continent collision is widely thought to be a major process governing the structural and geochemical evolution of the continental crust over geologic time. Collisions of intra-oceanic arcs with passive continental margins (a situation in which the arc, on the upper plate, faces the continent) involve a substantially different geometry than collisions of intra-oceanic arcs with active continental margins (a situation requiring more than one convergence zone and in which the arc, on the lower plate, backs into the continent), with variable preservation potential for basins in each case. Substantial differences also occur between trench and forearc evolution in tectonically erosive versus tectonically accreting margins, both before and after collision. We examine the evolution of trenches, trench-slope basins, forearc basins, intra-arc basins, and backarc basins during arc-continent collision. The preservation potential of trench-slope basins is low; in collision they are rapidly uplifted and eroded, and at erosive margins they are progressively destroyed by subduction erosion. Post-collisional preservation of trench sediment and trench-slope basins is biased toward margins that were tectonically accreting for a substantial length of time before collision. Forearc basins in erosive margins are usually floored by strong lithosphere and may survive collision with a passive margin, sometimes continuing sedimentation throughout collision and orogeny. The low flexural rigidity of intra-arc basins makes them deep and, if preserved, potentially long records of arc and collisional tectonism. Backarc basins, in contrast, are typically subducted and their sediment either lost or preserved only as fragments in melange sequences. A substantial proportion of the sediment derived from

  3. Rifting Thick Lithosphere - Canning Basin, Western Australia

    NASA Astrophysics Data System (ADS)

    Czarnota, Karol; White, Nicky

    2016-04-01

    The subsidence histories and architecture of most, but not all, rift basins are elegantly explained by extension of ~120 km thick lithosphere followed by thermal re-thickening of the lithospheric mantle to its pre-rift thickness. Although this well-established model underpins most basin analysis, it is unclear whether the model explains the subsidence of rift basins developed over substantially thick lithosphere (as imaged by seismic tomography beneath substantial portions of the continents). The Canning Basin of Western Australia is an example where a rift basin putatively overlies lithosphere ≥180 km thick, imaged using shear wave tomography. Subsidence modelling in this study shows that the entire subsidence history of the <300 km wide and <6 km thick western Canning Basin is adequately explained by mild Ordovician extension (β≈1.2) of ~120 km thick lithosphere followed by post-rift thermal subsidence. This is consistent with the established model, described above, albeit with perturbations due to transient dynamic topography support which are expressed as basin-wide unconformities. In contrast the <150 km wide and ~15 km thick Fitzroy Trough of the eastern Canning Basin reveals an almost continuous period of normal faulting between the Ordovician and Carboniferous (β<2.0) followed by negligible post-rift thermal subsidence. These features cannot be readily explained by the established model of rift basin development. We attribute the difference in basin architecture between the western and eastern Canning Basin to rifting of thick lithosphere beneath the eastern part, verified by the presence of ~20 Ma diamond-bearing lamproites intruded into the basin depocentre. In order to account for the observed subsidence, at standard crustal densities, the lithospheric mantle is required to be depleted in density by 50-70 kg m-3, which is in line with estimates derived from modelling rare-earth element concentrations of the ~20 Ma lamproites and global isostatic

  4. Reorientation of icy satellites by impact basins

    NASA Astrophysics Data System (ADS)

    Nimmo, F.; Matsuyama, I.

    2007-10-01

    Large impact basins are present on many of the icy satellites of the outer solar system. Assuming that their present-day topography is uncompensated, such basins can cause significant poleward reorientations for slow-rotating satellites. This reorientation may have been accompanied by transient large-amplitude wobble. The largest basins on Tethys, Rhea and Titania are predicted to have caused reorientations of roughly 4°, 7° and 12°, respectively, resulting in global tectonic stresses up to ~0.5 MPa. The potential anomalies associated with the basins can be up to one-third of those expected for a hydrostatic, tidally- and rotationally-deformed body, and may complicate interpretation of the satellite interior structure. Pluto and Charon, because of their slow rotation, are also likely to have undergone reorientation of 10-20° if they possess impact basins of comparable sizes to those of the Saturnian satellites.

  5. Hydrological research basins and the environment

    NASA Astrophysics Data System (ADS)

    Alley, V. M.; Warmerdam, P. M. M.

    The role and relative importance of experimental and representative basins in pre-dieting anthropogenic effects on water resources and the environment was the goal of the International Conference on Hydrological Research Basins and the Environment, held in Wageningen, the Netherlands, September 24-28, 1990. About 70 persons, almost exclusively from Europe, attended the meeting, which was organized by the Committee of the European Network of Experimental and Representative Basins and the National Committee of the Netherlands for the International Hydrological Program of Unesco.During the conference, the 3rd General Meeting of the European Network of Experimental and Representative Basins was held. This network of basins, covering nine countries in Europe, organizes periodic meetings and tries to enhance the compatibility of observations and methods of analysis, and to implement research projects of common interest.

  6. Petroleum geochemistry of the Zala Basin, Hungary

    USGS Publications Warehouse

    Clayton, J.L.; Koncz, I.

    1994-01-01

    The Zala basin is a subbasin within the Pannonian basin. Geochemical study of oils and rocks in the basin indicate that two, and possibly three, genetic oil types are present in the basin. Miocene source rocks, previously believed to be the predominant source rock, have expelled minor amounts of hydrocarbons. The main source rock is the Upper Triassic (Rhaetian) Kossen Marl Formation or its stratigraphic equivalent. Knowledge of the geochemical characteristics of oils derived from these Upper Triassic source rocks and understanding of the source rock distribution and maturation history are important for recognizing Triassic oil-source bed relationships and for further exploration in other basins in Hungary and other parts of Europe where Triassic source rocks are present. -from Authors

  7. Determination of the Relationship between Hydrologic Processes and Basin Morphometry - The Lamos Basin (Mersin, Turkey)

    NASA Astrophysics Data System (ADS)

    Yıldırım, Ümit; Güler, Cüneyt

    2016-04-01

    This study has been carried out to determine the relationship between hydrologic processes and basin morphometry in the Lamos Basin, which is located at the northern part of the Mersin (SE Turkey). The morphometric parameters of the basin was derived from the 1:25K scale topographic map sheets that were digitized using ArcGIS 9.3.1 geographic information system (GIS) software. Morphometric parameters considered in this study include basin area, basin length, basin perimeter length, stream order, stream number, stream length, mean stream length, basin relief, drainage density, stream frequency, drainage texture, bifurcation ratio, form factor, elongation ratio, overland flow length, relief ratio, and hypsometric integral. The results have shown that there are 1252 individual stream reaches with a total length of 1414.1 km in the Lamos basin, which covers an area of 1358 km2 and has a length of 103 km in the N-S direction. Furthermore, the basin has a medium drainage density of 1.04 1/km with a stream frequency and drainage texture values of 0.92 and 4.33, respectively. The basin can be classified as elongated because of the low values of elongation ratio (0.48) and form factor (0.12). The hypsometric integral of the basin (0.58) indicates that it is in the youth period and thus reasonably sensitive to erosion. The values of drainage texture, drainage density, and stream frequency indicate that the Lamos basin is moderately well drained, therefore overland flow in the basin is not expected to be so quick. Thus, in case of occurrence of sudden peak flows, sensitivity to the land sliding and erosion may increase further. As a result, it is suggested that human activities in the basin should be limited in areas in fairly close proximity to the present day stream network to prevent or reduce the risk to life and property.

  8. Thermal state of the Arkoma Basin and the Anadarko Basin, Oklahoma

    NASA Astrophysics Data System (ADS)

    Lee, Youngmin

    1999-12-01

    One of the most fundamental physical processes that affects virtually all geologic phenomena in sedimentary basins is the flow of heat from the Earth's interiors. The Arkoma Basin and the Anadarko Basin, Oklahoma, are a prolific producer of both oil and natural gas. Both basins also have important geologic phenomena. Understanding the thermal state of the these basins is crucial to understanding the timing and extent of hydrocarbon generation, the genesis of Mississippi Valley-type ore deposits, and the origin of overpressures in the Anadarko Basin. In chapter one, heat flow and heat production in the Arkoma basin and Oklahoma Platform are discussed. Results of this study are not generally supportive of theories which invoke topographically driven regional groundwater flow from the Arkoma Basin in Late Pennsylvanian-Early Permian time (˜290 Ma) to explain the genesis of geologic phenomena. In chapter 2, different types of thermal conductivity temperature corrections that are commonly applied in terrestrial heat flow studies are evaluated. The invariance of the relative rankings with respect to rock porosity suggests the rankings may be valid with respect to in situ conditions. Chapter three addresses heat flow and thermal history of the Anadarko Basin and the western Oklahoma Platform. We found no evidence for heat flow to increase significantly from the Anadarko Basin in the south to the Oklahoma Platform to the north. In chapter four, overpressures in the Anadarko Basin, southwestern Oklahoma are discussed. Using scale analyses and a simple numerical model, we evaluated two endmember hypotheses (compaction disequilibrium and hydrocarbon generation) as possible causes of overpressuring. Geopressure models which invoke compaction disequilibrium do not appear to apply to the Anadarko Basin. The Anadarko Basin belongs to a group of cratonic basins which are tectonically quiescent and are characterized by the association of abnormal pressures with natural gas

  9. New Classification of Impact Basins and Its Implications for Basin Evolution on the Moon

    NASA Astrophysics Data System (ADS)

    Ji, J.; Liu, J.; Guo, D.

    2016-12-01

    Large impact basins, the comprehensive results of internal and external dynamic geological processes, are the principal topographic features on the Moon. Study on evolution of those large impact basins provides important clues for understanding early history of the Moon. However, to classify the impact basins before anyone can link their characteristics to basin evolution, discrepancies occur among different classification systems, of which some did not to consider the effect of filled basalt [1] or some did not to consider the category of non-mascon basins [2, 3]. In order to clarify the ambiguous basin types caused by different classifications, we re-examined impact basins ≥ 200 km in diameter (66 in total; excluding SPA basin) using the GRAIL geophysical data, LRO DEM data and LP geochemical data from NASA Planetary Data System. We chose two major category labels: mascon or not [1, 2, 3] and the basin floor is covered by basalt/basaltic materials or not [4, 5]; plus, we considered topographic signatures as the clue of timescale. As a result, the 66 impact basins were classified into four categories: Type I (20), mascon basins with basalt or basaltic materials and most of them show well-preserved topography signature; Type II (28), mascon basins without basalt or basaltic materials, most of them are located on the farside with preserved topography signature; Type III (11), non-mascon basins with basalt or basaltic materials, most basins of this type are dated as Pre-Nectarian except for Van de Graaff basin and showing severely degraded topography; Type IV (6), non-mascon basins without basalt or basaltic materials, all basins of this type are dated as Pre-Nectarian with severely degraded topography. This new classification scheme can be easily applied to various lunar basins and help us to locate important information about early environment or thermal state of the Moon by comparison study of regional geological evolution of different basin types. References [1

  10. Plio-Pleistocene drainage development in an inverted sedimentary basin: Vera basin, Betic Cordillera, SE Spain

    NASA Astrophysics Data System (ADS)

    Stokes, Martin

    2008-08-01

    The Vera basin is one of a series of interconnected Neogene-Quaternary sedimentary basins located within the Internal Zone of the Betic Cordillera (southeast Spain). Since the Pliocene the Vera basin has been subjected to low uplift rates (11-21 m Ma - 1 ) and inverted via compressive tectonics that are related to the ongoing oblique collision between the African and Iberian plates. Within this paper the sedimentary and geomorphic response to basin inversion is explored. Sedimentary processes and environments are established for key stratigraphic units of the Pliocene/Plio-Pleistocene basin fill and Pleistocene dissectional landscape. These data are subsequently utilised to reconstruct an evolving basin palaeogeography. Fault and uplift data are employed to discuss the role of tectonically driven basin inversion for controlling the resultant palaeogeographic changes and associated patterns of drainage development. During the Early-Mid Pliocene the Vera basin was characterised by shallow marine shelf conditions (Cuevas Formation). A major palaeogeographic reorganisation occurred during the Mid-Late Pliocene. Strike-slip movement along the eastern basin margin, coupled with uplift and basin emergence created a protected, partially enclosed marine embayment that was conducive for Gilbert-type fan-delta sedimentation from fluvial inputs along the northern and eastern basin margins (Espíritu Santo Formation). The Vera basin then became fully continental and internally drained through the development of a consequent drainage network that formed following the withdrawal of marine conditions during the Late Pliocene to Early Pleistocene. Alluvial fans developed along the northern and western basin margins, grading to a bajada and terminating in a playa lake in central basin areas (Salmerón Formation). During the Early-Mid Pleistocene a switch from basin infilling to dissection took place, recorded by alluvial fan incision, a switch to braided river sedimentation and

  11. Safety and immunogenicity of a modified-vaccinia-virus-Ankara-based influenza A H5N1 vaccine: a randomised, double-blind phase 1/2a clinical trial.

    PubMed

    Kreijtz, Joost H C M; Goeijenbier, Marco; Moesker, Fleur M; van den Dries, Lennert; Goeijenbier, Simone; De Gruyter, Heidi L M; Lehmann, Michael H; Mutsert, Gerrie de; van de Vijver, David A M C; Volz, Asisa; Fouchier, Ron A M; van Gorp, Eric C M; Rimmelzwaan, Guus F; Sutter, Gerd; Osterhaus, Albert D M E

    2014-12-01

    Modified vaccinia virus Ankara (MVA) is a promising viral vector platform for the development of an H5N1 influenza vaccine. Preclinical assessment of MVA-based H5N1 vaccines showed their immunogenicity and safety in different animal models. We aimed to assess the safety and immunogenicity of the MVA-haemagglutinin-based H5N1 vaccine MVA-H5-sfMR in healthy individuals. In a single-centre, double-blind phase 1/2a study, young volunteers (aged 18-28 years) were randomly assigned with a computer-generated list in equal numbers to one of eight groups and were given one injection or two injections intramuscularly at an interval of 4 weeks of a standard dose (10(8) plaque forming units [pfu]) or a ten times lower dose (10(7) pfu) of the MVA-H5-sfMR (vector encoding the haemagglutinin gene of influenza A/Vietnam/1194/2004 virus [H5N1 subtype]) or MVA-F6-sfMR (empty vector) vaccine. Volunteers and physicians who examined and administered the vaccine were masked to vaccine assignment. Individuals who received the MVA-H5-sfMR vaccine were eligible for a booster immunisation 1 year after the first immunisation. Primary endpoint was safety. Secondary outcome was immunogenicity. The trial is registered with the Dutch Trial Register, number NTR3401. 79 of 80 individuals who were enrolled completed the study. No serious adverse events were identified. 11 individuals reported severe headache and lightheadedness, erythema nodosum, respiratory illness (accompanied by influenza-like symptoms), sore throat, or injection-site reaction. Most of the volunteers had one or more local (itch, pain, redness, and swelling) and systemic reactions (rise in body temperature, headache, myalgia, arthralgia, chills, malaise, and fatigue) after the first, second, and booster immunisations. Individuals who received the 10(7) dose had fewer systemic reactions. The MVA-H5-sfMR vaccine at 10(8) pfu induced significantly higher antibody responses after one and two immunisations than did 10(7) pfu when

  12. Lunar Multiring Basins and the Cratering Process

    NASA Astrophysics Data System (ADS)

    Wieczorek, Mark A.; Phillips, Roger J.

    1999-06-01

    Numerous studies of the lunar gravity field have concluded that the lunar Moho is substantially uplifted beneath the young multiring basins. This uplift is presumably due to the excavation of large quantities of crustal material during the cratering process and subsequent rebound of the impact basin floor. Using a new dual-layered crustal thickness model of the Moon, the excavation cavities of some nearside multiring basins (Grimaldi and larger, and younger than Tranquillitatis) were reconstructed by restoring the uplifted Moho to its preimpact location. The farside South Pole-Aitken (SPA) basin was also considered due to its importance in deciphering lunar evolution. Restoring the Moho to its preimpact position beneath these basins resulted in a roughly parabolic depression from which the depth and diameter of the excavation cavity could be determined. Using these reconstructed excavation cavities, the basin-forming process was investigated. Excavation cavity diameters were generally found to be on the small side of most previous estimates (for Orientale the modeled excavation cavity lies within the Inner Rook Ring). Additionally, with the exception of the three largest basins (Serenitatis, Imbrium, and South Pole-Aitken) the depth/diameter ratios of the excavation cavities were found to be 0.115±0.005, a value consistent with theoretical and experimental results for impact craters orders of magnitude smaller in size. The three largest basins, however, appear to have significantly shallower depths of excavation compared to this trend. It is possible that this may reflect a different physical process of crater formation (e.g., nonproportional scaling), special impact conditions, or postimpact modification processes. The crustal thickness model also shows that each basin is surrounded by an annulus of thickened crust. We interpret this thickened crust as representing thick basin ejecta deposits, and we show that the radial variation in the thickness of these

  13. Bedrock geology and chemistry of rivers basins

    NASA Astrophysics Data System (ADS)

    Peucker-Ehrenbrink, B.; Miller, M. W.

    2003-04-01

    The lack of modern quantitative estimates of the Earth’s surface geology, one of the key parameters influencing river and ocean chemistry, is striking. While some attempts have been made to quantify the lithologic composition of bedrock in individual river basins (e.g., Reeder et al., 1972; Amiotte-Suchet et al., 2002), the geologic age distribution of bedrock in river basins has not been investigated. We have therefore initiated a project aimed at generating a worldwide dataset on the bedrock lithology and age distribution of river basins, using the latest digital geologic maps and modern geographic information system technology. To date we have completed analysis of the digital geologic maps North America. These data have been used in conjunction with digital river basin polygons (Revenga et al., 1998, World Resources Institute) to compute the lithologic composition and geologic age structure of major river basins in North America. The lithologic composition of 14 large river basins range from predominantly igneous rocks dominated (Frazer, Columbia), to those dominated by sedimentary rocks (Brazos, Susquehanna, Mississippi), to basins with an equal mix of igneous, metamorphic and sedimentary bedrock (Thelon). Subdividing sedimentary rocks into marine and continental rocks reveals that continental sediments account for no more than 25% of sedimentary rocks in these river basins (e.g., Nelson, Colorado, Mississippi). A further subdivision of igneous rocks into intrusive and volcanic rocks reveals the entire range of igneous composition, from basins dominated by intrusive rocks (Hudson, Mackenzie, Nelson) to those dominated by volcanic rocks (Susquehanna, Colorado, Frazer, Columbia). We are currently analyzing the age distribution of major lithologic units in each river basin. In cases where detailed hydrochemical data is available for major tributaries we will expand the analysis to sub-basins (e.g., Frazer, Mississippi). Basins smaller than about 40,000 km^2

  14. Rocky Mountain Tertiary coal-basin models and their applicability to some world basins

    USGS Publications Warehouse

    Flores, R.M.

    1989-01-01

    Tertiary intermontane basins in the Rocky Mountain region of the United States contain large amounts of coal resources. The first major type of Tertiary coal basin is closed and lake-dominated, either mud-rich (e.g., North Park Basin, Colorado) or mud plus carbonate (e.g., Medicine Lodge Basin, Montana), which are both infilled by deltas. The second major type of Tertiary coal basin is open and characterized by a preponderance of sediments that were deposited by flow-through fluvial systems (e.g., Raton Basin, Colorado and New Mexico, and Powder River Basin, Wyoming and Montana). The setting for the formation of these coals varies with the type of basin sedimentation, paleotectonism, and paleoclimate. The mud-rich lake-dominated closed basin (transpressional paleotectonism and warm, humid paleoclimate), where infilled by sandy "Gilbert-type" deltas, contains thick coals (low ash and low sulfur) formed in swamps of the prograding fluvial systems. The mud- and carbonate-rich lake-dominated closed basin is infilled by carbonate precipitates plus coarse-grained fan deltas and fine-grained deltas. Here, thin coals (high ash and high sulfur) formed in swamps of the fine-grained deltas. The coarse-clastic, open basins (compressional paleotectonism and warm, paratropical paleoclimate) associated with flow-through fluvial systems contain moderately to anomalously thick coals (high to low ash and low sulfur) formed in swamps developed in intermittently abandoned portions of the fluvial systems. These coal development patterns from the Tertiary Rocky Mountain basins, although occurring in completely different paleotectonic settings, are similar to that found in the Tertiary, Cretaceous, and Permian intermontane coal basins in China, New Zealand, and India. ?? 1989.

  15. Umatilla Basin Habitat Improvement Project.

    SciTech Connect

    Bailey, Timothy D.

    1990-01-01

    This annual report is in fulfillment of contract obligations with Bonneville Power Administration which is the funding source for the Oregon Department of Fish and Wildlife's Umatilla Basin Habitat Improvement Project. The major activities undertaken during this report period were: procurement of 17 cooperative lease agreements with private landowners, design and layout of 8.6 miles of riparian exclosure fence and 3.0 miles of instream structures, development of five fencing contracts and six instream work contracts. Results include implementation of 10 miles of fencing and 3 miles of instream work. Other activities undertaken during this report period are: data collection from 90 habitat monitoring transects, collection and summarization of temperature data, photopoint establishment, coordination with numerous agencies and tribes and education of all age groups on habitat improvement and protection. 4 refs., 4 figs., 6 tabs.

  16. Wyoming Basin Rapid Ecoregional Assessment

    USGS Publications Warehouse

    Carr, Natasha B.; Melcher, Cynthia P.

    2015-08-28

    We evaluated Management Questions (Core and Integrated) for each species and community for the Wyoming Basin REA. Core Management Questions address primary management issues, including (1) where is the Conservation Element, and what are its key ecological attributes (characteristics of species and communities that may affect their long-term persistence or viability); (2) what and where are the Change Agents; and (3) how do the Change Agents affect the key ecological attributes? Integrated Management Questions synthesize the Core Management Questions as follows: (1) where are the areas with high landscape-level ecological values; (2) where are the areas with high landscape-level risks; and (3) where are the potential areas for conservation, restoration, and development? The associated maps and key findings for each Management Question are summarized for each Conservation Element in individual chapters. Additional chapters on landscape intactness and an REA synthesis are included.

  17. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2000-09-28

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  18. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2003-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  19. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2004-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  20. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2005-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  1. Wyoming Basin Rapid Ecoregional Assessment

    USGS Publications Warehouse

    Carr, Natasha B.; Melcher, Cynthia P.

    2015-08-28

    We evaluated Management Questions (Core and Integrated) for each species and community for the Wyoming Basin REA. Core Management Questions address primary management issues, including (1) where is the Conservation Element, and what are its key ecological attributes (characteristics of species and communities that may affect their long-term persistence or viability); (2) what and where are the Change Agents; and (3) how do the Change Agents affect the key ecological attributes? Integrated Management Questions synthesize the Core Management Questions as follows: (1) where are the areas with high landscape-level ecological values; (2) where are the areas with high landscape-level risks; and (3) where are the potential areas for conservation, restoration, and development? The associated maps and key findings for each Management Question are summarized for each Conservation Element in individual chapters. Additional chapters on landscape intactness and an REA synthesis are included.

  2. Gladden Pull-Apart Basin, offshore Belize

    SciTech Connect

    Morrice, S. )

    1993-02-01

    The junction of the American and Caribbean plates in Belize has created a complex structural setting for oil and gas exploration. Recent seismic offshore Belize has been used to identify three structural provinces, from west to east: a shallow thrust zone, a narrow upthrown wrench faulted zone and a deeper extensional basin, named the Gladden Pull-Apart Basin. Hydrocarbon leakage from recent fault movement appears to have depleted the shallow structures to the west, but the pull-apart basin has a thick sequence of low-frequency clay-dominated sealing rocks with the potential to preserve hydrocarbon accumulations in Cretaceous carbonate banks. These buried carbonate are of the same age and depositional environment of Mexico's Golden Lane/Tabasco Reforma carbonate banks which are world class giant fields. The Belize and Mexican carbonate banks are within the same Cretaceous depositional basin, the Peten Basin. Seismic interpretations in offshore Belize have been integrated with gravity and magnetic surveys. This provides additional support for the deep extensional basin. The location of the thick Cretaceous carbonate banks is better interpreted with the integration of these three geophysical tools. Airborne geochemical surveys were used to detect the presence of oil seeps on the east and west basin margins.

  3. Petroleum potential of the Reggane Basin, Algeria

    SciTech Connect

    Boudjema, A.; Hamel, M.; Mohamedi, A.; Lounissi, R. )

    1990-05-01

    The intracratonic Reggane basin is located on the Saharan platform, southwest of Algeria. The basin covers an area of approximately 140,000 km{sup 2}, extending between the Eglab shield in the south and the Ougarta ranges in the north. Although exploration started in the early 1950s, only a few wells were drilled in this basin. Gas was discovered with a number of oil shows. The sedimentary fill, mainly Paleozoic shales and sandstones, has a thickness exceeding 5,000 m in the central part of the basin. The reservoirs are Cambrian-Ordovician, Siegenian, Emsian, Tournaisian, and Visean sandstones with prospective petrophysical characteristics. Silurian Upper Devonian and, to a lesser extent Carboniferous shales are the main source rocks. An integrated study was done to assess the hydrocarbon potential of this basin. Tectonic evolution source rocks and reservoirs distribution maturation analyses followed by kinetic modeling, and hydrogeological conditions were studied. Results indicate that gas accumulations could be expected in the central and deeper part of the basin, and oil reservoirs could be discovered on the basin edge.

  4. Submarine landslides in Arctic sedimentation: Canada Basin

    USGS Publications Warehouse

    Mosher, David C.; Shimeld, John; Hutchinson, Deborah R.; Lebedova-Ivanova, N; Chapman, C.

    2016-01-01

    Canada Basin of the Arctic Ocean is the least studied ocean basin in the World. Marine seismic field programs were conducted over the past 6 years using Canadian and American icebreakers. These expeditions acquired more than 14,000 line-km of multibeam bathymetric and multi-channel seismic reflection data over abyssal plain, continental rise and slope regions of Canada Basin; areas where little or no seismic reflection data existed previously. Canada Basin is a turbidite-filled basin with flat-lying reflections correlateable over 100s of km. For the upper half of the sedimentary succession, evidence of sedimentary processes other than turbidity current deposition is rare. The Canadian Archipelago and Beaufort Sea margins host stacked mass transport deposits from which many of these turbidites appear to derive. The stratigraphic succession of the MacKenzie River fan is dominated by mass transport deposits; one such complex is in excess of 132,000 km2 in area and underlies much of the southern abyssal plain. The modern seafloor is also scarred with escarpments and mass failure deposits; evidence that submarine landsliding is an ongoing process. In its latest phase of development, Canada Basin is geomorphologically confined with stable oceanographic structure, resulting in restricted depositional/reworking processes. The sedimentary record, therefore, underscores the significance of mass-transport processes in providing sediments to oceanic abyssal plains as few other basins are able to do.

  5. Submarine Landslides in Arctic Sedimentation: Canada Basin

    USGS Publications Warehouse

    Mosher, David C.; Shimeld, John; Hutchinson, Deborah R.; Lebedova-Ivanova, N; Chapman, C.

    2016-01-01

    Canada Basin of the Arctic Ocean is the least studied ocean basin in the World. Marine seismic field programs were conducted over the past 6 years using Canadian and American icebreakers. These expeditions acquired more than 14,000 line-km of multibeam bathymetric and multi-channel seismic reflection data over abyssal plain, continental rise and slope regions of Canada Basin; areas where little or no seismic reflection data existed previously. Canada Basin is a turbidite-filled basin with flat-lying reflections correlateable over 100s of km. For the upper half of the sedimentary succession, evidence of sedimentary processes other than turbidity current deposition is rare. The Canadian Archipelago and Beaufort Sea margins host stacked mass transport deposits from which many of these turbidites appear to derive. The stratigraphic succession of the MacKenzie River fan is dominated by mass transport deposits; one such complex is in excess of 132,000 km2 in area and underlies much of the southern abyssal plain. The modern seafloor is also scarred with escarpments and mass failure deposits; evidence that submarine landsliding is an ongoing process. In its latest phase of development, Canada Basin is geomorphologically confined with stable oceanographic structure, resulting in restricted depositional/reworking processes. The sedimentary record, therefore, underscores the significance of mass-transport processes in providing sediments to oceanic abyssal plains as few other basins are able to do.

  6. Metabolic principles of river basin organization.

    PubMed

    Rodriguez-Iturbe, Ignacio; Caylor, Kelly K; Rinaldo, Andrea

    2011-07-19

    The metabolism of a river basin is defined as the set of processes through which the basin maintains its structure and responds to its environment. Green (or biotic) metabolism is measured via transpiration and blue (or abiotic) metabolism through runoff. A principle of equal metabolic rate per unit area throughout the basin structure is developed and tested in a river basin characterized by large heterogeneities in precipitation, vegetation, soil, and geomorphology. This principle is suggested to have profound implications for the spatial organization of river basin hydrologic dynamics, including the minimization of energy expenditure known to control the scale-invariant characteristics of river networks over several orders of magnitude. Empirically derived, remarkably constant rates of average transpiration per unit area through the basin structure lead to a power law for the probability distribution of transpiration from a randomly chosen subbasin. The average runoff per unit area, evaluated for subbasins of a wide range of topological magnitudes, is also shown to be remarkably constant independently of size. A similar result is found for the rainfall after accounting for canopy interception. Allometric scaling of metabolic rates with size, variously addressed in the biological literature and network theory under the label of Kleiber's law, is similarly derived. The empirical evidence suggests that river basin metabolic activity is linked with the spatial organization that takes place around the drainage network and therefore with the mechanisms responsible for the fractal geometry of the network, suggesting a new coevolutionary framework for biological, geomorphological, and hydrologic dynamics.

  7. Geological, mineralogical and geochemical characteristics of zeolite deposits associated with borates in the Bigadiç, Emet and Kirka Neogene lacustrine basins, western Turkey

    NASA Astrophysics Data System (ADS)

    Gündogdu, M. N.; Yalçin, H.; Temel, A.; Clauer, N.

    1996-09-01

    The Bigadiç, Emet and Kirka lacustrine basins of western Turkey may be considered as Tibet-type graben structures that were developed during the Miocene within the Izmir-Ankara suture zone complex. The volcanic-sedimentary successions of these basins are made up of mudstone, carbonate (limestone and dolomite) and detrital rocks, and also of crystal or vitric tuffs about 135 to 200 m thick. The Degirmenli (Bigadiç), Emirler (Bigadiç) Köpenez (Emet) and Karaören (Kirka) tuffs constituting the zeolite deposits are situated beneath four borate deposits (colemanite, ulexite, borax). The most abundant diagenetic silicate minerals are K- and Ca-clinoptilolites in the zeolite deposits, and Li-rich trioctahedral smectites (stevensite, saponite and hectorite) and K-feldspar in the borate deposits. In the Degirmenli, Emirler, Köpenez and Karaören deposits, the following diagenetic facies were developed from rhyolitic glasses rich in K and poor in Na: (glass+smectite), (K-clinoptilolite+opal-CT), (Ca-clinoptilolite+K-feldspar±analcime± quartz) and (K-feldspar+analcime+quartz). K-feldspar which is also rarely associated with phillipsite (Karaören) and heulandite (Degirmenli and Karaören), succeeds clinoptilolite and precedes analcime in these diagenetic facies where dioctahedral smectites, opal-CT and quartz are the latest minerals. No diagenetic transformations exist between clinoptilolite, K-feldspar and analcime that were formed directly from glass. The lateral facies distributions resulted from the differences in salinity and pH of pore water trapped during deposition of the tuffs, but vertical distributions in vitric tuffs seem to have been controlled by the glass/liquid ratio of the reacting system and the permeability or diffusion rate of alkali elements. The Bigadiç, Emet and Kirka zeolite deposits which were formed in saline basins rich in Ca and Mg ions, show similar chemical changes, i.e. loss of alkalis and gain in alkaline-earth elements that have taken

  8. Genesis of Tuzla salt basin

    NASA Astrophysics Data System (ADS)

    Sušić, Amir; Baraković, Amir; Komatina, Snezana

    2017-04-01

    Salt is condition for the survival of the human race, and holds a special place in the exploitation of mineral resources. It is the only mineral raw material used in direct feeding, and therefore has its own specialty. Salt is a crystalline mineral that is found in seawater, as well as in underground areas where it is formed by deposition of salt sediments. Occurrences of salt water near Tuzla and Gornja Tuzla have been known since the time of the Romans as "ad salinas". The name itself connects Bosnia with its richness in salt, because the word barefoot, which is preserved in a north-Albanian dialect, means a place where boiling salted water are obtained. At the time of the Bosnian kings, these regions are named Soli, which is in connection with occurences of saline sources. Geological studies of rock salt in the area of Tuzla basin are practically began after the annexation of Bosnia and Herzegovina by the Austro-Hungarian Empire, in the period from 1878 to 1918. Geological field work was conducted K. Paul, H. Hefer, E. Tietze and F. Katzer. Monomineral deposit of rock salt Tetima is made of halite and anhydrite mixed with marl belt, while the bay of salt in Tuzla is polymineral and contains a considerable amount of thenardite (Na2SO4) and rare minerals: nortupit, nahkolit, bradleit, probertit, glauberite and others. Both salt deposits were created as a product of chemical sedimentation in the lower Miocene Badenian sediments. The main objective of this paper is to show the genesis of the deposits and the spatial and genetic connection. In addition, genesis of geological research in the areas of Tuzla basin will be presented.

  9. Thermal conditions in the Anadarko basin, Oklahoma

    SciTech Connect

    Kelley, S.A.; Gallardo, J.D.; Carter, L.C.; Blackwell, D.D. )

    1991-03-01

    Heat flow, bottom-hole temperature (BHT), and thermal conductivity data are used to evaluate the present thermal conditions in the Anadarko basin. Heat flow values decrease from 54-62 mWm{sup {minus}2} in the northern part of the basin to 39-53 mWm{sup {minus}2} in the southern portion of the basin. The variation in the regional conductive heat flow is controlled by basin geometry and by the distribution of radiogenic elements in the basement. The heat flow, thermal conductivity, and lithologic information were combined to construct a 3-D model of the temperature structure of the Anadarko basin. The highest temperatures sedimentary rocks older than Pennsylvanian are offset 35 km north-northwest of the deepest part of the basin. This offset is related to the regional increase in heat flow to the north and to the presence of high thermal conductivity granite wash adjacent to the Wichita Mountains. A plot of the temperature difference between the equilibrium temperatures estimated from the model and the measured BHTs as a function of depth is remarkably similar to the published correction curve for BHTs for wells in Oklahoma. Vitrinite reflectance and apatite fission-track (FT) data are used to estimate the paleogeothermal conditions in the basin. Published vitrinite reflectance values are consistent with a past geographic temperature distribution comparable to the observed distribution with the maximum values offset from the basin axis. FT analysis of sandstones from wells in the southeastern portion of the basin indicates that subsurface temperatures were at least 30C higher than at present, suggest the possibility of substantial erosion in this area.

  10. Report card--Murray-Darling Basin--2001.

    PubMed

    Goss, K

    2002-01-01

    Ongoing deterioration of the riverine environments of the Murray-Darling Basin led the Murray-Darling Basin Ministerial Council to introduce a Cap in 1995 to halt the growth in diversions of water for consumptive use. This initiative recognised the finite nature of water resources in the Basin and sought to introduce a balance between off-stream use of water and protection of the riverine environment. But the cap is only one step, albeit a fundamental one, in restoring the Basin's rivers--it is a "stake in the ground". Parties to the Murray-Darling Basin Initiative recognise the need to reverse decades of creeping decline if the Basin's rivers and riverine environments are to return to a more ecologically sustainable condition. In the last 12 months, Council and Commission have taken far-reaching decisions designed to restore the Basin's Rivers. Many of these decisions, even 10 years ago, would have been unimaginable. The Report Card will explain the need for a number of recent decisions that will impact on the future of the Basin's rivers. For example, Council's decision to establish an Environmental Manager function in the Office of the Commission was made in the context of the recently agreed Integrated Catchment Management (ICM) Policy, and supporting Sustainable Rivers Audit. The role of targets and accountabilities under the ICM Policy will also be discussed. The Report Card will also present a snapshot of the state of the Basin's rivers and the actions being taken at a range of scales and locations in response to identified problems. Because some of the key initiatives are still in development, this Report Card will set the scene by describing where our attention is being focused and why.

  11. Tectono-stratigraphic evolution of an inverted extensional basin: the Cameros Basin (north of Spain)

    NASA Astrophysics Data System (ADS)

    Omodeo Salè, Silvia; Guimerà, Joan; Mas, Ramón; Arribas, José

    2014-09-01

    The Cameros Basin is a part of the Mesozoic Iberian Rift. It is an extensional basin formed during the late Jurassic and early Cretaceous, in the Mesozoic Iberian Rift context, and it was inverted in the Cenozoic as a result of the Alpine contraction. This work aims to reconstruct the tectono-stratigraphic evolution of the basin during the Mesozoic, using new and revised field, geophysical and subsurface data. The construction of a basin-wide balanced section with partial restorations herein offers new insights into the geometry of the syn-rift deposits. Field data, seismic lines and oil well data were used to identify the main structures of the basin and the basin-forming mechanisms. Mapping and cross-sectional data indicate the marked thickness variation of the depositional sequences across the basin, suggesting that the extension of the depositional area varied during the syn-rift stage and that the depocentres migrated towards the north. From field observation and seismic line interpretation, an onlap of the depositional sequences to the north, over the marine Jurassic substratum, can be deduced. In the last few decades, the structure and geometry of the basin have been strongly debated. The structure and geometry of the basin infill reconstructed herein strongly support the interpretation of the Cameros Basin as an extensional-ramp synclinal basin formed on a blind south-dipping extensional ramp. The gradual hanging-wall displacement to the south shifted the depocentres to the north over time, thus increasing the basin in size northwards, with onlap geometry on the pre-rift substratum. The basin was inverted by means of a main thrust located in a detachment located in the Upper Triassic beds (Keuper), which branched in depth with the Mesozoic extensional fault flat. The reconstruction of the tectono-stratigraphic evolution of the Cameros Basin proposed herein represents a synthesis and an integration of previous studies of the structure and geometry of the

  12. Flexural Origin of the Puget Basins: Implications for the Seattle Fault and Puget Basin Tectonics

    NASA Astrophysics Data System (ADS)

    Crosson, R. S.; Symons, N. P.

    2001-12-01

    At least five distinct basins of varying depth, including the Seattle basin, form a semi-circular ring around the eastern Olympic Mts. Although the Seattle basin has been postulated to result from a northward vergent thrust on the Seattle fault, other basins have a less clear relationship to faulting. A purely thrust origin for the Seattle basin requires uplift, which is not observed, south of the Seattle fault to isostatically balance the large mass deficiency of the Seattle basin. High-resolution P-wave velocity imaging of the Puget region using earthquakes, data from the recent SHIPS experiments, and data from earlier explosion experiments shows that the Puget basins are underlain by approximately 15 km of "tectonically" strong Crescent formation (part of the Coast Range Terrain - CRT). Low velocity core rocks of the eastern Olympics are emplaced beneath the CRT in a radial pattern that mirrors the pattern of the Puget basins, strongly suggesting that the basins are genetically related to the Olympic structure. A model of basin formation that is consistent with gravity and seismic data, and that explains the observed radial pattern is elastic flexural down-warp in response to uplift and subsequent erosion of the CRT in the central Olympic Mts. The CRT is now erosionally removed from the Olympic core, exposing the underlying accretionary wedge complex. The available information on timing of the Olympic uplift generally agrees with the inferred timing of basin subsidence. Since the "lever arm" which forced the basins downward is removed by erosion from the eastern Olympics, basin subsidence has probably stopped, and isostatic rebound of the Seattle and other basins should play a role in current tectonics. Relative uplift of the Seattle basin, consistent with isostatic rebound, explains the north-side-up mechanism of the June 1997 M 4.9 earthquake near Bremerton, the north-side-up pattern of faults trenched on southern Bainbridge Island, and possibly the uplift of

  13. K Basins isolation barriers summary report

    SciTech Connect

    Strickland, G.C., Westinghouse Hanford

    1996-07-31

    The 105-K East and 105-K West fuel storage basins (105-K Basins) were designed and constructed in the early 1950`s for interim storage of irradiated fuel following its discharge from the reactors. The 105-K- East and 105-K West reactor buildings were constructed first, and the associated storage basins were added about a year later. The construction joint between each reactor building structure and the basin structure included a flexible membrane waterstop to prevent leakage. Water in the storage basins provided both radiation shielding and cooling to remove decay heat from stored fuel until its transfer to the Plutonium Uranium Extraction (PUREX) Facility for chemical processing. The 105-K West Reactor was permanently shut down in February 1970; the 105-K East Reactor was permanently shut down in February 1971. Except for a few loose pieces, fuel stored in the basins at that time was shipped to the PUREX Facility for processing. The basins were then left idle but were kept filled with water. The PUREX Facility was shut down and placed on wet standby in 1972 while N Reactor continued to operate. When the N Reactor fuel storage basin began to approach storage capacity, the decision was made to modify the fuel storage basins at 105-K East and 105-K West to provide additional storage capacity. Both basins were subsequently modified (105-K East in 1975 and 105-K West in 1981) to provide for the interim handling and storage of irradiated N Reactor fuel. The PUREX Facility was restarted in November 1983 to provide 1698 additional weapons-grade plutonium for the United States defense mission. The facility was shut down and deactivated in December 1992 when the U.S. Department of Energy (DOE) determined that the plant was no longer needed to support weapons-grade plutonium production. When the PUREX Facility was shut down, approximately 2.1 x 1 06 kg (2,100 metric tons) of irradiated fuel aged 7 to 23 years was left in storage in the 105-K Basins pending a decision on

  14. Prediction of hydrocarbons in sedimentary basins

    USGS Publications Warehouse

    Harff, J.E.; Davis, J.C.; Eiserbeck, W.

    1993-01-01

    To estimate the undiscovered hydrocarbon potential of sedimentary basins, quantitative play assessments specific for each location in a region may be obtained using geostatistical methods combined with the theory of classification of geological objects, a methodology referred to as regionalization. The technique relies on process modeling and measured borehole data as well as probabilistic methods to exploit the relationship between geology (the "predictor") and known hydrocarbon productivity (the "target") to define prospective stratigraphic intervals within a basin. It is demonstrated in case studies from the oil-producing region of the western Kansas Pennsylvanian Shelf and the gas-bearing Rotliegend sediments of the Northeast German Basin. ?? 1993 International Association for Mathematical Geology.

  15. Damming the rivers of the Amazon basin.

    PubMed

    Latrubesse, Edgardo M; Arima, Eugenio Y; Dunne, Thomas; Park, Edward; Baker, Victor R; d'Horta, Fernando M; Wight, Charles; Wittmann, Florian; Zuanon, Jansen; Baker, Paul A; Ribas, Camila C; Norgaard, Richard B; Filizola, Naziano; Ansar, Atif; Flyvbjerg, Bent; Stevaux, Jose C

    2017-06-14

    More than a hundred hydropower dams have already been built in the Amazon basin and numerous proposals for further dam constructions are under consideration. The accumulated negative environmental effects of existing dams and proposed dams, if constructed, will trigger massive hydrophysical and biotic disturbances that will affect the Amazon basin's floodplains, estuary and sediment plume. We introduce a Dam Environmental Vulnerability Index to quantify the current and potential impacts of dams in the basin. The scale of foreseeable environmental degradation indicates the need for collective action among nations and states to avoid cumulative, far-reaching impacts. We suggest institutional innovations to assess and avoid the likely impoverishment of Amazon rivers.

  16. Two basins explored in Dominican Republic

    SciTech Connect

    Ellis, G.M.

    1996-04-29

    Exploration companies are exploring two tracts in separate basins of the Dominican Republic. Drilling is under way or planned in the eastern Cibao basin in the northeastern part of the country, where Petrolera Once Once SA holds a 1,001,287 ha concession, and the Azua-Bani basin in the southwester, where Mobil-Murfin holds a 2,266,197 ha concession. About 75 wells have been drilled onshore in Dominican Republic, but commercial production has not been established. This paper summarizes the exploration history and geology of the area.

  17. Stratigraphy of the Caloris basin, Mercury

    USGS Publications Warehouse

    McCauley, J.F.; Guest, J.E.; Schaber, G.G.; Trask, N.J.; Greeley, R.

    1981-01-01

    The 1300-km-diameter Caloris impact basin is surrounded by well-defined ejecta units that can be recognized from more than 1000 km, radially outward from the basin edge. A formal rock stratigraphic nomenclature is proposed for the Caloris ejecta units, which are collectively called the Caloris Group. Each of the individual formations within the Group are described and compared to similar rock units associated with the lunar Imbrium and Orientale basins. A crater degradation chronology, linked the the Caloris event, is also proposed to assist in stratigraphic correlation on a Mercury-wide basis. ?? 1981.

  18. YARD NO. 3 BASINS (GRAVING DOCKS), VIEW TO EASTNORTHEAST AT ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    YARD NO. 3 BASINS (GRAVING DOCKS), VIEW TO EAST-NORTHEAST AT THE SOUTH END OF THE CRANEWAY AND GALLERY BETWEEN BASINS NO. 1 AND 2, LOOKING ACROSS SOUTH END OF BASIN NO. 1 (THE WESTERN-MOST BASIN) - Rosie the Riveter National Historical Park, Graving Docks, Shipyard No. 3, Richmond, Contra Costa County, CA

  19. 75 FR 33238 - Basin Electric Power Cooperative: Deer Creek Station

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-11

    ...; ] DEPARTMENT OF AGRICULTURE Rural Utilities Service Basin Electric Power Cooperative: Deer Creek Station AGENCY... Basin Electric Power Cooperative's (Basin Electric) application for a RUS loan and a Western... Office, 314 6th Avenue, Brookings, SD. SUPPLEMENTARY INFORMATION: Basin Electric's proposed Project is to...

  20. 75 FR 8895 - Basin Electric Power Cooperative: Deer Creek Station

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-26

    ...; ] DEPARTMENT OF AGRICULTURE Rural Utilities Service Basin Electric Power Cooperative: Deer Creek Station AGENCY... potential environmental impacts of and alternatives to Basin Electric Power Cooperative's (Basin Electric...: (202) 690-0649, or e-mail: lauren.mcgee @wdc.usda.gov. SUPPLEMENTARY INFORMATION: Basin Electric's...

  1. 75 FR 43915 - Basin Electric Power Cooperative: Deer Creek Station

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-27

    ... Rural Utilities Service Basin Electric Power Cooperative: Deer Creek Station AGENCY: Rural Utilities... environmental impacts of and alternatives to Basin Electric Power Cooperative's (Basin Electric) application for...://www.usda.gov/rus/water/ees/eis.htm . SUPPLEMENTARY INFORMATION: Basin Electric's proposed Project is...

  2. Prediction method of sediment discharge from forested basin

    Treesearch

    Kazutoki Abe; Ushio Kurokawa; Robert R. Ziemer

    2000-01-01

    An estimation model for sediment discharge from a forested basin using Universal Soil Loss Equation and delivery ratio was developed. Study basins are North fork and South fork in Caspar Creek, north California, where Forest Service, USDA has been using water and sediment discharge from both basins since 1962. The whole basin is covered with the forest, mainly...

  3. Discharge forecasts in mountain basins based on satellite snow cover mapping. [Dinwoody Creek Basin, Wyoming and the Dischma Basin, Switzerland

    NASA Technical Reports Server (NTRS)

    Martinec, J.; Rango, A. (Principal Investigator)

    1980-01-01

    The author has identified the following significant results. A snow runoff model developed for European mountain basins was used with LANDSAT imagery and air temperature data to simulate runoff in the Rocky Mountains under conditions of large elevation range and moderate cloud cover (cloud cover of 40% or less during LANDSAT passes 70% of the time during a snowmelt season). Favorable results were obtained for basins with area not exceeding serval hundred square kilometers and with a significant component of subsurface runoff.

  4. A tale of two stormwater basins: Nutrient cycling in grassed stormwater detention versus bioretention basins

    NASA Astrophysics Data System (ADS)

    McPhillips, L. E.; Walter, M. T.

    2016-12-01

    Nutrient cycling performance was compared in a grassed detention basin and a bioretention basin that was amended with compost, mulch, and diverse plantings. We monitored dissolved nutrients in basin inflows and outflows as well as emissions of greenhouse gases (GHGs) methane (CH4), carbon dioxide (CO2) and nitrous oxide (N2O) from basin soils during 2014 and 2015. Though these basins are intended to improve storm runoff quality, the bioretention basin was a source of nitrate, soluble reactive phosphorus (SRP) and dissolved organic carbon (DOC). SRP and DOC leaching was driven by high P and C content of the bioretention soil media and nitrate leaching was driven by the low C:N of added compost. Emissions of N2O and CH4 were low from both basins, though there were periodically high N2O emission rates at both sites. CO2 emissions were greater from the bioretention basin, where soil C content was greater. Based on these results, bioretention basin design should minimize organic matter (OM) additions to soil media and choose OM with high C:N (>20) and low P content in order to minimize availability of excess nutrients for leaching or GHG production.

  5. BASIN STRUCTURE FROM TWO-DIMENSIONAL SEISMIC REFLECTION DATA, CRAZY MOUNTAINS BASIN, MONTANA

    SciTech Connect

    David J. Taylor

    2003-08-01

    Some 140 miles of multichannel seismic reflection data, acquired commercially in the 1970's, were reprocessed by the U.S. Geological Survey in late 2000 and early 2001 to interpret the subsurface geology of the Crazy Mountains Basin, an asymmetric Laramide foreland basin located in south-central Montana. The seismic data indicate that the northwestern basin margin is controlled by a thrust fault that places basement rocks over a thick (22,000 feet) sequence of Paleozoic and Mesozoic sedimentary rocks to the south. From the deep basin trough, Paleozoic through Tertiary rocks slope gently upward to the south and southeast. The northern boundary of the basin, which is not imaged well by the seismic data, appears to be folded over a basement ridge rather than being truncated against a fault plane. Seismic data along the basin margin to the south indicate that several fault controlled basement highs may have been created by thin-skinned tectonics where a series of shallow thrust faults cut Precambrian, Paleozoic, and early Mesozoic rocks, whereas, in contrast, Cretaceous and Tertiary strata are folded. The data are further interpreted to indicate that this fault-bounded asymmetric basin contains several structures that possibly could trap hydrocarbons, provided source rocks, reservoirs, and seals are present. In addition, faults in the deep basin trough may have created enough fracturing to enhance porosity, thus developing ''sweet spots'' for hydrocarbons in basin-centered continuous gas accumulations.

  6. Death of a carbonate basin: The Niagara-Salina transition in the Michigan basin

    SciTech Connect

    Leibold, A.W.; Howell, P.D. )

    1991-03-01

    The A-O Carbonate in the Michigan basin comprises a sequence of laminated calcite/anhydrite layers intercalated with bedded halite at the transition between normal marine Niagaran carbonates and lower Salina Group evaporites. The carbonate/anhydrite interbeds represent freshing events during initial evaporative concentration of the Michigan basin. Recent drilling in the Michigan basin delineates two distinct regions of A-O Carbonate development: a 5 to 10 m thick sequence of six 'laminites' found throughout most of the western and northern basin and a 10 to 25 m thick sequence in the southeastern basin containing both thicker 'laminates' and thicker salt interbeds. Additionally, potash deposits of the overlying A-1 evaporite unit are restricted to the northern and western basin regions. The distribution of evaporite facies in these two regions is adequately explained by a source of basin recharge in the southeast-perhaps the 'Clinton Inlet' of earlier workers. This situation suggest either that: (1) the source of basin recharge is alternately supplying preconcentrated brine and more normal marine water, or (2) that the basin received at least two distinct sources of water during A-O deposition.

  7. Superposition of tectonic structures leading elongated intramontane basin: the Alhabia basin (Internal Zones, Betic Cordillera)

    NASA Astrophysics Data System (ADS)

    Martínez-Martos, Manuel; Galindo-Zaldivar, Jesús; Martínez-Moreno, Francisco José; Calvo-Rayo, Raquel; Sanz de Galdeano, Carlos

    2017-01-01

    The relief of the Betic Cordillera was formed since the late Serravallian inducing the development of intramontane basins. The Alhabia basin, situated in the central part of the Internal Zones, is located at the intersection of the Alpujarran Corridor, the Tabernas basin, both trending E-W, and the NW-SE oriented Gádor-Almería basin. The geometry of the basin has been constrained by new gravity data. The basin is limited to the North by the Sierra de Filabres and Sierra Nevada antiforms that started to develop in Serravallian times under N-S shortening and to the south by Sierra Alhamilla and Sierra de Gádor antiforms. Plate convergence in the region rotated counter-clockwise in Tortonian times favouring the formation of E-W dextral faults. In this setting, NE-SW extension, orthogonal to the shortening direction, was accommodated by normal faults on the SW edge of Sierra Alhamilla. The Alhabia basin shows a cross-shaped depocentre in the zone of synform and fault intersection. This field example serves to constrain recent counter-clockwise stress rotation during the latest stages of Neogene-Quaternary basin evolution in the Betic Cordillera Internal Zones and underlines the importance of studying the basins' deep structure and its relation with the tectonic structures interactions.

  8. VIEW TO EAST OF THE NORTH END OF BASIN NO. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    VIEW TO EAST OF THE NORTH END OF BASIN NO. 1 (THE WESTERN-MOST BASIN) SHOWING THE CRANEWAY AND GALLERY BETWEEN BASINS NO. 1 AND 2. BASSWOOD BUOY TENDER AND THREE SMALL VESSELS ARE BERTHED IN BASIN NO. 1. LARGER VESSELS ARE BERTHED IN BASINS TO THE EAST, SEEN IN BACKGROUND - Rosie the Riveter National Historical Park, Graving Docks, Shipyard No. 3, Richmond, Contra Costa County, CA

  9. Snow Water Equivalent for Tuolumne River Basin

    NASA Image and Video Library

    2013-05-02

    NASA Airborne Snow Observatory measurements of snow water equivalent top image and snow albedo, or reflectivity bottom image for the Tuolumne River Basin in California Sierra Nevada on April 21, 2013.

  10. Program Updates - San Antonio River Basin

    EPA Pesticide Factsheets

    This page will house updates for this urban waters partnership location. As projects progress, status updates can be posted here to reflect the ongoing work by partners in San Antonio working on the San Antonio River Basin.

  11. Tidal frequency estimation for closed basins

    NASA Technical Reports Server (NTRS)

    Eades, J. B., Jr.

    1978-01-01

    A method was developed for determining the fundamental tidal frequencies for closed basins of water, by means of an eigenvalue analysis. The mathematical model employed, was the Laplace tidal equations.

  12. KE Basin water dispositioning engineering study

    SciTech Connect

    Hunacek, G.S.; Gahir, S.S.

    1994-09-23

    This engineering study is a feasibility study of KE Basin water treatment to an acceptable level and dispositioning the treated water to Columbia River, ground through ETF or to air through evaporation.

  13. Fishes of the White River basin, Indiana

    USGS Publications Warehouse

    Crawford, Charles G.; Lydy, Michael J.; Frey, Jeffrey W.

    1996-01-01

    Since 1875, researchers have reported 158 species of fish belonging to 25 families in the White River Basin. Of these species, 6 have not been reported since 1900 and 10 have not been reported since 1943. Since the 1820's, fish communities in the White River Basin have been affected by the alteration of stream habitat, overfishing, the introduction of non-native species, agriculture, and urbanization. Erosion resulting from conversion of forest land to cropland in the 1800's led to siltation of streambeds and resulted in the loss of some silt-sensitive species. In the early 1900's, the water quality of the White River was seriously degraded for 100 miles by untreated sewage from the City of Indianapolis. During the last 25 years, water quality in the basin has improved because of efforts to control water pollution. Fish communities in the basin have responded favorably to the improved water quality.

  14. K-Basins S/RIDS

    SciTech Connect

    Watson, D.J.

    1995-09-22

    The Standards/Requirements Identification Document(S/RID) is a list of the Environmental, Safety, and Health (ES&H) and Safeguards and Security (SAS) standards/requirements applicable to the K Basins facility

  15. Climate change and the Great Basin

    Treesearch

    Jeanne C. Chambers

    2008-01-01

    Climate change is expected to have significant impacts on the Great Basin by the mid-21st century. The following provides an overview of past and projected climate change for the globe and for the region.

  16. K-Basins S/RIDS

    SciTech Connect

    Watson, D.J.

    1997-08-01

    The Standards/Requirements Identification Document (S/RID) is a list of the Environmental, Safety, and Health (ES{ampersand}H) and Safeguards and Security (SAS) standards/requirements applicable to the K Basins facility.

  17. Pacific Basin Communication Study, volume 2

    NASA Technical Reports Server (NTRS)

    Young, E. L.; Hurd, J. N.

    1981-01-01

    Users' meeting summary report, chronology of visits, economic data for forum countries, techniques used in the study, communication choices, existing resources in the Pacific Basin, and warc 79 region 3 rules and regulations were presented in volume 2.

  18. Large Circular Basin Flooded and then Cratered

    NASA Image and Video Library

    2000-08-05

    As NASA Mariner 10 passed by Mercury on its second encounter with the planet on Sept. 21, 1974, this picture of a large circular 350 kilometer, 220 mile diameter basin was obtained near the morning terminator.

  19. Southern rim of Isidis Planitia basin

    NASA Image and Video Library

    2002-05-21

    This scene from NASA Mars Odyssey shows the contrasting morphologies of the relatively rough highland terrain in the lower portion of the image and the relatively smooth materials at top of the southern rim of the Isidis Planitia basin.

  20. Overflow of Radioactive Water from K Basins

    SciTech Connect

    RITTMANN, P.D.

    1999-10-06

    This report documents the dose calculations for the postulated K Basin overflow accident using current methods to model the environmental doses for radioactive releases into the Columbia River and the air.

  1. Hydro Impact Basin Ribbon-Cutting Ceremony

    NASA Image and Video Library

    August 9, 2011 -- Ribbon-cutting ceremony for the Hydro Impact Basin at NASA's Langley Research Center in Hampton, Va. The HIB expands NASA's capability to test and certify future spacecraft for wa...

  2. Surveyor Map of Enceladus Geyser Basin

    NASA Image and Video Library

    2014-07-28

    On this polar stereographic map of Enceladus south polar terrain, all 100 geysers have been plotted whose source locations have been determined in NASA Cassini imaging survey of the moon geyser basin.

  3. Petroleum potential of the Libyan sedimentary basins

    SciTech Connect

    Hammuda, O.S.; Sbeta, A.M.

    1988-08-01

    Contrary to prevailing opinion, all Libyan sedimentary basins and the Al-Jabal Al-Akhdar platform contain prolific petroleum accumulations with very high prospectivity. A systematic review of the types of traps and pays in this central part of the southern Mediterranean province reveals great variability in reservoir and source rock characteristics. The reservoir rocks are of almost all geologic ages. The thick source rock sequences also vary in nature and organic content. The organic-rich facies have accumulated in intracratonic and passive margin basins or in marginal seas. Most of the oil discovered thus far in these basins is found in large structural traps. Future discoveries of stratigraphic traps or small structural traps will require intensified efforts and detailed studies using up-to-date multidisciplinary techniques in sedimentary tectonics, biostratigraphic facies analysis, and geochemical prospecting in order to develop a better understanding of these basins, thus improving their prospectivity.

  4. River Basin Standards Interoperability Pilot

    NASA Astrophysics Data System (ADS)

    Pesquer, Lluís; Masó, Joan; Stasch, Christoph

    2016-04-01

    There is a lot of water information and tools in Europe to be applied in the river basin management but fragmentation and a lack of coordination between countries still exists. The European Commission and the member states have financed several research and innovation projects in support of the Water Framework Directive. Only a few of them are using the recently emerging hydrological standards, such as the OGC WaterML 2.0. WaterInnEU is a Horizon 2020 project focused on creating a marketplace to enhance the exploitation of EU funded ICT models, tools, protocols and policy briefs related to water and to establish suitable conditions for new market opportunities based on these offerings. One of WaterInnEU's main goals is to assess the level of standardization and interoperability of these outcomes as a mechanism to integrate ICT-based tools, incorporate open data platforms and generate a palette of interchangeable components that are able to use the water data emerging from the recently proposed open data sharing processes and data models stimulated by initiatives such as the INSPIRE directive. As part of the standardization and interoperability activities in the project, the authors are designing an experiment (RIBASE, the present work) to demonstrate how current ICT-based tools and water data can work in combination with geospatial web services in the Scheldt river basin. The main structure of this experiment, that is the core of the present work, is composed by the following steps: - Extraction of information from river gauges data in OGC WaterML 2.0 format using SOS services (preferably compliant to the OGC SOS 2.0 Hydrology Profile Best Practice). - Model floods using a WPS 2.0, WaterML 2.0 data and weather forecast models as input. - Evaluation of the applicability of Sensor Notification Services in water emergencies. - Open distribution of the input and output data as OGC web services WaterML, / WCS / WFS and with visualization utilities: WMS. The architecture

  5. Assessment of undiscovered carboniferous coal-bed gas resources of the Appalachian Basin and Black Warrior Basin Provinces, 2002

    SciTech Connect

    Milici, R.C.; Hatch, J.R.

    2004-09-15

    Coalbed methane (CBM) occurs in coal beds of Mississippian and Pennsylvanian (Carboniferous) age in the Appalachian basin, which extends almost continuously from New York to Alabama. In general, the basin includes three structural subbasins: the Dunkard basin in Pennsylvania, Ohio, and northern West Virginia; the Pocahontas basin in southern West Virginia, eastern Kentucky, and southwestern Virginia; and the Black Warrior basin in Alabama and Mississippi. For assessment purposes, the Appalachian basin was divided into two assessment provinces: the Appalachian Basin Province from New York to Alabama, and the Black Warrior Basin Province in Alabama and Mississippi. By far, most of the coalbed methane produced in the entire Appalachian basin has come from the Black Warrior Basin Province. 8 refs., 1 fig., 1 tab.

  6. Are calanco landforms similar to river basins?

    PubMed

    Caraballo-Arias, N A; Ferro, V

    2017-12-15

    In the past badlands have been often considered as ideal field laboratories for studying landscape evolution because of their geometrical similarity to larger fluvial systems. For a given hydrological process, no scientific proof exists that badlands can be considered a model of river basin prototypes. In this paper the measurements carried out on 45 Sicilian calanchi, a type of badlands that appears as a small-scale hydrographic unit, are used to establish their morphological similarity with river systems whose data are available in the literature. At first the geomorphological similarity is studied by identifying the dimensionless groups, which can assume the same value or a scaled one in a fixed ratio, representing drainage basin shape, stream network and relief properties. Then, for each property, the dimensionless groups are calculated for the investigated calanchi and the river basins and their corresponding scale ratio is evaluated. The applicability of Hack's, Horton's and Melton's laws for establishing similarity criteria is also tested. The developed analysis allows to conclude that a quantitative morphological similarity between calanco landforms and river basins can be established using commonly applied dimensionless groups. In particular, the analysis showed that i) calanchi and river basins have a geometrically similar shape respect to the parameters Rf and Re with a scale factor close to 1, ii) calanchi and river basins are similar respect to the bifurcation and length ratios (λ=1), iii) for the investigated calanchi the Melton number assumes values less than that (0.694) corresponding to the river case and a scale ratio ranging from 0.52 and 0.78 can be used, iv) calanchi and river basins have similar mean relief ratio values (λ=1.13) and v) calanchi present active geomorphic processes and therefore fall in a more juvenile stage with respect to river basins. Copyright © 2017 Elsevier B.V. All rights reserved.

  7. Basin-Scale Ocean Prediction System

    DTIC Science & Technology

    2016-06-07

    Basin-Scale Ocean Prediction System Mr. Robert C. Rhodes phone: (228) 688-4704 fax: (228) 688-4759 email: rhodes@nrlssc.navy.mil Dr. Harley E...Hurlburt phone: (228) 688-4626 fax: (228) 688-4759 email: hurlburt@nrlssc.navy.mil Naval Research Laboratory, Ocean Dynamics and Prediction ...satellite altimetry, sea surface temperature and in-situ data. OBJECTIVES The development and validation of global and basin-scale ocean prediction

  8. Evaporitic minibasins of the Sivas Basin (Turkey)

    NASA Astrophysics Data System (ADS)

    Pichat, Alexandre; Hoareau, Guilhem; Callot, Jean-Paul; Ringenbach, Jean-Claude; Kavak, Kaan

    2017-04-01

    The Oligo-Miocene Sivas basin (Turkey) was strongly affected by salt tectonics, best expressed in its central part. Halokinesis initiated from a main evaporite layer deposited during the Upper Eocene. Such evaporitic accumulations led to two generations of mini basins filled with continental to marine deposits, and nowadays separated by diapiric gypsum walls or welds. Some mini-basins developed above depleting diapirs, filled by more than 50 % of lacustrine to sebkhaic gypsiferous facies. These evaporitic mini-basins (EMB) developed during periods of limited fluvial input, when diapiric stems were outcropping with insignificant topographic reliefs. Chemical analyses (S, O and Sr) suggest that such evaporites were sourced from the recycling of adjacent salt structures. EMB development above diapirs can be explained by (i) high regional accommodation (Ribes et al., 2016), (ii) erosion of the diapiric crests by the fluvial system preceding evaporite deposition, (iii) deflation of some diapirs in a transtensive setting (Kergaravat, 2015), and (iv) fast sedimentation rate of the evaporites. EMB stand out from other siliciclastic mini-basins of the Sivas Basin by (i) their small dimension (< 1km), (ii) their teardrop encased shape and (iii) exacerbated internal halokinetic deformations. The latter specifically include large halokinetic wedges, mega-slumps or inverted mega-flaps. Comparison with siliciclastic mini-basins suggests that strong halokinesis of EMB was triggered by the ductile rheology of their evaporitic infilling. Additional filling and subsequent withdrawal of EMB may have been also increased by (i) the large amount of solutes provided by leaching of the outcropping diapiric structure together with the fast sedimentation rate of the evaporites and (iii) the high density of the gypsum and anhydrite compared to halite. The Great Kavir in Iran could display present day analogues relevant of early-stage EMB. Finally, although EMB have never been identified in

  9. Paraguay river basin response to seasonal rainfall

    NASA Astrophysics Data System (ADS)

    Krepper, Carlos M.; García, Norberto O.; Jones, Phil D.

    2006-07-01

    The use of river flow as a surrogate to study climatic variability implies the assumption that changes in rainfall are mirrored and likely amplified in streamflow. This is probably not completely true in large basins, particularly those that encompass different climatic regions, like the Paraguay river basin. Not all the signals present in precipitation are reflected in river flow and vice versa. The complex relationship between precipitation and streamflow could filter some signals and introduce new oscillatory modes in the discharge series. In this study the whole basin (1 095 000 km2) was divided into two sub-basins. The upper basin is upstream of the confluence with the River Apa and the lower basin is between the Apa river confluence and the Puerto Bermejo measuring station. The rainfall contribution shows a clear wet season from October to March and a dry season from April to September. A singular spectrum analysis (SSA) shows that there are trends in rainfall contributions over the upper and lower basins. Meanwhile, the lower basin only presents a near-decadal cycle (T 10 years). To determine the flow response to seasonal rainfall contributions, an SSA was applied to seasonal flow discharges at Puerto Bermejo. The seasonal flows, Q(t)O-M and Q(t)A-S, present high significant modes in the low-frequency band, like positive trends. In addition, Q(t)O-M presents a near-decadal mode, but only significant at the 77% level for short window lengths (M ≤ 15 years). Really, the Paraguay river flow is not a good surrogate to study precipitation variation. The low-frequency signals play an important role in the flow behaviour, especially during extreme events from the second half of the last century onwards.

  10. Ordovician chitinozoan zones of Great Basin

    SciTech Connect

    Hutter, T.J.

    1987-08-01

    Within the Basin and Range province of the Great Basin of the western US, Ordovician chitinozoans have been recovered in two major lithic facies; the western eugeosynclinal facies and the eastern miogeosynclinal facies. Chitinozoans recovered from these facies range in age from Arenig to Ashgill. Extensive collections from this area make possible the establishment of chitinozoan faunal interval zones from the Ordovician of this area. Selected species of biostratigraphic value include, in chronostratigraphic order, Lagenochitina ovoidea Benoit and Taugourdeau, 1961, Conochitina langei Combaz and Peniguel, 1972, Conochitinia poumoti Combaz and Penique, Desmochitina cf. nodosa Eisenack, 1931, Conochitina maclartii Combaz and Peniguel, 1972, Conochitina robusta Eisenack, 1959, Angochitina capitallata Eisenack, 1937, Sphaerochitina lepta Jenkins. 1970, and Ancyrochitina merga Jenkins, 1970. In many cases, these zones can be divided into additional sub-zones using chitinozoans and acritarchs. In all cases, these chitinozoan faunal zones are contrasted with established American graptolite zones of the area, as well as correlated with British standard graptolite zones. The composition of these faunas of the western US Great Basin is similar to that of the Marathon region of west Texas and the Basin Ranges of Arizona and New Mexico, to which direct comparisons have been made. There also appears to be a great similarity with the microfaunas and microfloras of the Ordovician of the Canning basin of western Australia. The Ordovician chitinozoan faunal interval zones established for the Basin and Range province of the Great Basin of the western US also appear to be applicable to the Marathon region of west Texas and the Basin Ranges of Arizona and New Mexico.

  11. Interpretation of magnetic anomalies over the Grenada Basin

    NASA Astrophysics Data System (ADS)

    Bird, Dale E.; Hall, Stuart A.; Casey, John F.; Millegan, Patrick S.

    1993-10-01

    The Grenada Basin is a back arc basin located near the eastern border of the Caribbean Plate. The basin is bounded on the west by the north-south trending Aves Ridge (a remnant island arc) and on the east by the active Lesser Antilles island arc. Although this physiography suggests that east-west extension formed the basin, magnetic anomalies over the basin exhibit predominantly east-west trends. If the observed magnetic anomalies over the basin are produced by seafloor spreading, then the orientation of extension is complex. Extension in back arc basins is roughly normal to the trench, although some basins exhibit oblique extension. Present models for the formation of the Grenada Basin vary from north-south extension through northeast-southwest extension to east-west extension. An interpretation of magnetic anomalies over the Grenada Basin supports basin development by nearly east-west extension. Low amplitude magnetic anomaly trends subparallel to the island arc magnetic anomaly trends over the southern part of the basin and the results of forward three-dimensional (3-D) magnetic modeling are consistent with this conclusion. Late Cenozoic tectonic movements may have been responsible for disrupting the magnetic signature over the northern part of the basin. On the basis of our 3-D analysis, we attribute the prominent east-west trending anomalies of the Grenada Basin to fracture zones formed during seafloor spreading at low latitude. This east-west trend is not interpreted as indicating north-south extension of the basin.

  12. Thermal evolution of the Newark basin

    SciTech Connect

    Huntoon, J.E. ); Furlong, K.P. )

    1992-09-01

    A one-dimensional conductive thermal model is used to calculate the transient thermal history of the Newark basin, a Triassic-Jurassic continental rift basin in the eastern United States that formed during the separation of North America and Africa. The model accounts for deposition, erosion, igneous activity, lithology-dependent variations in thermal conductivity, depth-dependent radiogenic heat production, and changes in heat flow through time. A burial and erosion history for the Newark basin is constructed for the modeling, including changes in heat flow through time, emplacement of Jurassic lava flows at the surface, and emplacement of the Palisades still at depth. Vitrinite-reflectance values and apatite and zircon fission-track ages, for units of both Triassic and Jurassic age, are used to constrain the models. Use of two different data sets greatly limits the number and types of models that can reproduce the observed data. Modeling results indicate that initial formation of the Newark basin is not coincident in time with a thermal event. Elevated heat flow (on the order of 130 mW/m[sup 2] in the models) did affect the basin during its evolution, however, and was associated with igneous activity (at approximately 201-199.5 Ma in the models). Results of the modeling also indicate that the original sedimentary package in the Newark basin was approximately 2.5 km thicker than today.

  13. Evaluation of Junggar Basin in China

    SciTech Connect

    Zhou, J.G.

    1996-06-01

    Junggar basin lies in the northwestern comer of China and has an area of about 130,000 km{sup 2}, in a compression tectonic regime, with about 14 suites of source-reservoir-seal assemblages developed from Carboniferous to Eogene. It is a prolific basin with a total hydrocarbon generation of 266.9 billion tons, an upside oil potential of 6.937 billion tons and a gas potential of 1,228.9 billion m{sup 3}. Due to its tuff surface conditions and remoteness, the exploration level is still very low: the proven geological reserve was calculated; the cumulative oil production was 0.123599434 billion tons by year-end 1994. There will be about 5.4 billion tons of oil yet to find in the entire basin. Right now, there are four blocks (Z1, Z2, Z3 and Z4), in the basin, available for bidding. Geologic assessment of the basin indicates these four blocks are located in the favorable potential regions of the basin. Details supporting this evaluation are contained herein. The petroleum potential of each local structure or play depends on its position to certain hydrocarbon sources during geological history and its structural development history as well as fault growth history.

  14. The East Falcon Basin: Its Caribbean roots

    SciTech Connect

    Bartok, P.; Boesi, T.

    1996-08-01

    The East Falcon Basin has been described persistently in the context of the Maracaibo Basin tectonic framework. It is the objective of the present study to demonstrate that the Falcon Basin is, in effect, a Caribbean basin juxtaposed on South America and affected by Caribbean tectonics. The oldest rocks outcropping in the region are Late Paleozoic metamorphic and igneous rocks rafted from northcentral Colombia, Middle Jurassic ophiolite complexes, sediments and metasediments and Cretaceous ophiolites transported by a melange of late Cretaceous to early Tertiary sediments. The south vergence of the Caribbean Nappe province has been documented and extends to the present limit of the Andean uplift and to the southern limit of the Coastal Range. The migrating foredeep that developed during the Paleocene-Eocene deposited dominantly basinal shales and thin sandstones. During the Oligocene the Caribbean faults of the Oca system and conjugates began with a dominantly transtensional regime becoming progressively transpressional by Miocene time. The facies development of the Oligocene-Miocene documents the tectonic history. Unique blocks remained as resistant blocks creating ramparts and modifying the basin configuration. During transpression northward-verging thrusting progressively migrated towards the present coastline. The most evident structures of the region are Caribbean in affinity and combined with the sedimentary history of the region can serve to unravel the complex Caribbean-South American plate interaction.

  15. The basins on the Argentine continental margin

    SciTech Connect

    Urien, C.M.

    1996-08-01

    After the stabilization of the central Gondwana Craton, orogenic belts were accreted, as a result of convergence events and an extensive passive margin developed in southwestern Gondwana. Thermal subsidence in Parana, Karoo-Ventania basins and the Late Paleozoic-Early Mesozoic rifts, were modified by the Gondwana breakup and the South Atlantic opening. Early Paleozoic marine transgressions deposited the Table Mountain Group in Ventania. In southwestern Patagonia foreland clastics were deposited. Magmatic arcs and marine units indicate a tectonic trough was formed, alternating with continental sequences, over Late Paleozoic metamorphics and intrusives, resulting from plastered terrains along the Gondwana margin. In Patagonia, Permo-Carboniferous continental and glacio marine clastics infill the basins, while in Ventania, paralic sequences, grade from neritic to continental to the northeast, extending beneath the continental margin. The Triassic-Jurassic rift basins progressed onto regional widespread acid lavas and were infilled by lagoonal organic-rich sequences. Early drift phase built basins transverse to the margin, with fluvio-lacustrine sequences: Salado, Colorado, Valdes-Rawson, San Julian and North Malvinas intracratonic basins, which underwent transtensional faulting. Post-Oxfordian to Neocomian brackish sequences, onlapped the conjugate basins during the margin`s drift, with petroleum systems, as in Austral and Malvinas. In the Valanginian, basic extrusions commenced to form on the continental border, heralding the oceanic phase. Due to thermal subsidence, offlaping sediments prograded onto the remaining half-grabens. Several petroleum systems, proven and hypothetical, are identified in this region.

  16. The thermal environment of Cascadia Basin

    NASA Astrophysics Data System (ADS)

    Johnson, H. Paul; Hautala, Susan L.; Bjorklund, Tor A.

    2012-07-01

    Located adjacent to the NE Pacific convergent boundary, Cascadia Basin has a global impact well beyond its small geographic size. Composed of young oceanic crust formed at the Juan de Fuca Ridge, igneous rocks underlying the basin are partially insulated from cooling of their initial heat of formation by a thick layer of pelagic and turbidite sediments derived from the adjacent North American margin. The igneous seafloor is eventually consumed at the Cascadia subduction zone, where interactions between the approaching oceanic crust and the North American continental margin are partially controlled by the thermal environment. Within Cascadia Basin, basement topographic relief varies dramatically, and sediments have a wide range of thickness and physical properties. This variation produces regional differences in heat flow and basement temperatures for seafloor even of similar age. Previous studies proposed a north-south thermal gradient within Cascadia Basin, with high geothermal flux and crustal temperatures measured in the heavily sedimented northern portion near Vancouver Island and lower than average heat flux and basement temperatures predicted for the central and southern portions of the basin. If confirmed, this prediction has implications for processes associated with the Cascadia subduction zone, including the location of the "locked zone" of the megathrust fault. Although existing archival geophysical data in the central and southern basin are sparse, nonuniformly distributed, and derived from a wide range of historical sources, a substantial N-S geothermal gradient appears to be confirmed by our present compilation of combined water column and heat flow measurements.

  17. Lunar basin formation and highland stratigraphy

    NASA Technical Reports Server (NTRS)

    Howard, K. A.; Wilhelms, D. E.; Scott, D. H.

    1974-01-01

    Multiring impact basins, formed after solidification of the lunar crust, account for most or all premare regional deposits and structures expressed in the lunar landscape and for major topographic and gravity variations. A fresh basin has two or more concentric mountain rings, a lineated ejecta blanket, and secondary impact craters. Crackled material on the floor may be impact melt. The ejecta blanket was emplaced at least partly as a ground-hugging flow and was probably hot. A suggested model of basin formation is that the center lifts up and the rings form by inward collapse during evisceration. The resulting basin is shallow and has a central uplift of the mantle. This results in a central gravity high and a ring low. Later flooding by mare basalt has since modified most near side basins. Highland deposits of plains, furrowed and pitted terrain, and various hills, domes, and craters that were interpreted before the Apollo missions as being volcanic can now be interpreted as being basin related.

  18. Seismic stratigraphy or Cape Sorell Basin, Tasmania

    SciTech Connect

    Bellow, T.L.

    1990-05-01

    Because large new exploration areas have become scarce, the Cape Sorell basin has become an increasingly attractive frontier area. Cape Sorell basin, located along the western passive continental margin of Tasmania formed as a result of the breakup of eastern Gondwanaland 95{plus minus}5 Ma. An extensional fault system trending west-northwest with dip-slip movement down to the south-southwest forms the northern boundary and a second fault system trending north-northwest with oblique slip down to the south-southwest creates the basin. Second order extensional faults within the basin have created wrench-type flower structures, which are potential migration pathways for hydrocarbons. Nine distinct depositional sequences identified within the Cape Sorell basin record the evolution of this passive continental margin. Late Cretaceous-early Paleocene sequences were deposited as the rifting ceased and clastic progradation over the rift terrain began. Relative lowering of sea level occurred during the Paleocene, resulting in extensive channeling of the Late Cretaceous-early Paleocene sequences. A subsequent rise in relative sea level resulted in canyon-fill deposition during the early Paleocene to early Eocene. During the Eocene, sedimentation sufficiently increased to produce a downlapping sediment progradation characterized by deltaic depositional environment. Although interrupted several times by changes in relative sea level and shifting sediment sources, deltaic deposition continued until the late Oligocene. As the rate of clastic sedimentation slowed, carbonate shelf deposition began and has typified the basin since late the Oligocene.

  19. Geothermal resources of California sedimentary basins

    USGS Publications Warehouse

    Williams, C.F.; Grubb, F.V.; Galanis, S.P.

    2004-01-01

    The 2004 Department of Energy (DOE) Strategic Plan for geothermal energy calls for expanding the geothermal resource base of the United States to 40,000 MW of electric power generating potential. This will require advances in technologies for exploiting unconventional geothermal resources, including Enhanced Geothermal Systems (EGS) and geopressured geothermal. An investigation of thermal conditions in California sedimentary basins through new temperature and heat flow measurements reveals significant geothermal potential in some areas. In many of the basins, the combined cooling effects of recent tectonic and sedimentary processes result in relatively low (<60 mW/m2) heat flow and geothermal gradients. For example, temperatures in the upper 3 km of San Joaquin, Sacramento and Ventura basins are typically less than 125??C and do not reach 200??c by 5 km. By contrast, in the Cuyama, Santa Maria and western Los Angeles basins, heat flow exceeds 80 mW/m2 and temperatures near or above 200??C occur at 4 to 5 km depth, which represents thermal conditions equivalent to or hotter than those encountered at the Soultz EGS geothermal site in Europe. Although the extractable geothermal energy contained in these basins is not large relative to the major California producing geothermal fields at The Geysers or Salton Sea, the collocation in the Los Angeles basin of a substantial petroleum extraction infrastructure and a major metropolitan area may make it attractive for eventual geothermal development as EGS technology matures.

  20. Paleogene retroarc flexural basin beneath the Neogene Pannonian Basin: A geodynamic model

    NASA Astrophysics Data System (ADS)

    Tari, G.; Báldi, T.; Báldi-Beke, M.

    1993-11-01

    The Neogene (Middle Miocene-Recent) Pannonian Basin is superimposed on an earlier Paleogene (Middle Eocene-Early Miocene) basin complex as a result of back-arc extension. Although the stratigraphy of the latter is very well known due to raw material exploration, its formation and structural evolution is much less understood. A transtensional origin was generally proposed for the Paleogene Basin of Hungary, assuming an origin analogous to that of the overlying Neogene Pannonian Basin. We suggest an alternative geodynamic scenario for the development of the Paleogene basin complex, as we think that the observations are better understood in terms of a retroarc foredeep basin model. According to this, a flexural basin developed south of the backthrust inner West Carpathian units. The thrust load resulted in a generally deep, underfilled "flysch" basin during Middle Eocene-Early Oligocene times. In the Late Oligocene-Early Miocene predominantly shallow marine and continental deposition occurred indicating the gradual cessation of thrusting in the adjacent thrust-fold belt and the beginning of "molasse" sedimentation. Throughout the whole Paleogene, a shift can be observed of the bathyal, dominantly siliciclastic (in the axis of the foredeep) and neritic, partly carbonate (in the foreland flank of the foredeep) facies belts. This migration of the Middle Eocene-Early Miocene depocenters of the HPB (Hungarian Paleogene Basin) to the east-northeast in present-day coordinates is the result of two processes: (1) the advancement of backthrusting to the southeast; (2) along-strike shift of thrusting to the northeast. While a thin-skinned thrust front can be reconstructed for the Late Eocene (Buda Anticline), the Diósjenö-Hurbanovo line is interpreted as the result of a major thick-skinned thrusting event at the base of the NP24 zone ( $˜31 Ma). The subsidence pattern, the distinct depositional environments and the structural observations can be more easily integrated into a

  1. Estimating tectonic history through basin simulation-enhanced seismic inversion: Geoinformatics for sedimentary basins

    USGS Publications Warehouse

    Tandon, K.; Tuncay, K.; Hubbard, K.; Comer, J.; Ortoleva, P.

    2004-01-01

    A data assimilation approach is demonstrated whereby seismic inversion is both automated and enhanced using a comprehensive numerical sedimentary basin simulator to study the physics and chemistry of sedimentary basin processes in response to geothermal gradient in much greater detail than previously attempted. The approach not only reduces costs by integrating the basin analysis and seismic inversion activities to understand the sedimentary basin evolution with respect to geodynamic parameters-but the technique also has the potential for serving as a geoinfomatics platform for understanding various physical and chemical processes operating at different scales within a sedimentary basin. Tectonic history has a first-order effect on the physical and chemical processes that govern the evolution of sedimentary basins. We demonstrate how such tectonic parameters may be estimated by minimizing the difference between observed seismic reflection data and synthetic ones constructed from the output of a reaction, transport, mechanical (RTM) basin model. We demonstrate the method by reconstructing the geothermal gradient. As thermal history strongly affects the rate of RTM processes operating in a sedimentary basin, variations in geothermal gradient history alter the present-day fluid pressure, effective stress, porosity, fracture statistics and hydrocarbon distribution. All these properties, in turn, affect the mechanical wave velocity and sediment density profiles for a sedimentary basin. The present-day state of the sedimentary basin is imaged by reflection seismology data to a high degree of resolution, but it does not give any indication of the processes that contributed to the evolution of the basin or causes for heterogeneities within the basin that are being imaged. Using texture and fluid properties predicted by our Basin RTM simulator, we generate synthetic seismograms. Linear correlation using power spectra as an error measure and an efficient quadratic

  2. Estimating tectonic history through basin simulation-enhanced seismic inversion: geoinfomatics for sedimentary basins

    NASA Astrophysics Data System (ADS)

    Tandon, Kush; Tuncay, Kagan; Hubbard, Kyle; Comer, John; Ortoleva, Peter

    2004-01-01

    A data assimilation approach is demonstrated whereby seismic inversion is both automated and enhanced using a comprehensive numerical sedimentary basin simulator to study the physics and chemistry of sedimentary basin processes in response to geothermal gradient in much greater detail than previously attempted. The approach not only reduces costs by integrating the basin analysis and seismic inversion activities to understand the sedimentary basin evolution with respect to geodynamic parameters-but the technique also has the potential for serving as a geoinfomatics platform for understanding various physical and chemical processes operating at different scales within a sedimentary basin. Tectonic history has a first-order effect on the physical and chemical processes that govern the evolution of sedimentary basins. We demonstrate how such tectonic parameters may be estimated by minimizing the difference between observed seismic reflection data and synthetic ones constructed from the output of a reaction, transport, mechanical (RTM) basin model. We demonstrate the method by reconstructing the geothermal gradient. As thermal history strongly affects the rate of RTM processes operating in a sedimentary basin, variations in geothermal gradient history alter the present-day fluid pressure, effective stress, porosity, fracture statistics and hydrocarbon distribution. All these properties, in turn, affect the mechanical wave velocity and sediment density profiles for a sedimentary basin. The present-day state of the sedimentary basin is imaged by reflection seismology data to a high degree of resolution, but it does not give any indication of the processes that contributed to the evolution of the basin or causes for heterogeneities within the basin that are being imaged. Using texture and fluid properties predicted by our Basin RTM simulator, we generate synthetic seismograms. Linear correlation using power spectra as an error measure and an efficient quadratic

  3. Mesozoic evolution of the Amu Darya basin

    NASA Astrophysics Data System (ADS)

    Brunet, Marie-Françoise; Ershov, Andrey; Korotaev, Maxim; Mordvintsev, Dmitriy; Barrier, Eric; Sidorova, Irina

    2014-05-01

    This study, granted by the Darius Programme, aims at proposing a model of tectono-stratigraphic evolution of the Amu Darya basin since the Late Palaeozoic and to understand the relationship with the nearby basins. The Amu Darya basin, as its close eastern neighbour, the Afghan-Tajik basin, lies on the Turan platform, after the closure of the Turkestan Ocean during the Late Paleozoic. These two basins, spread on mainly lowlands of Turkmenistan, southwest Uzbekistan, Tajikistan, and northern Afghanistan, are separated from one another by the South-Western Gissar meganticline, where series of the northern Amu Darya margin are outcropping. The evolution is closely controlled by several periods of crustal thinning (post-collision rifting and back-arc extension), with some marine incursions, coming in between accretions of continental blocks and collisions that succeeded from the Late Triassic-Early Jurassic (Eo-Cimmerian orogeny) to the Cenozoic times. These orogenies controlled the deposition of thick clastics sequences, and the collision of the Indian Plate with Eurasia strongly deformed the sedimentary cover of the Afghan-Tajik basin. The more than 7 km thick Meso-Cenozoic sedimentary succession of the Amu Darya basin, lies on a complex system of rifts and blocks. Their orientation and age (late Permian, Triassic?) are not well known because of deep burial. The north-eastern margin, with the Bukhara (upper margin) and Chardzhou steps, is NW oriented, parallel to the Paleozoic Turkestan suture. The orientation bends to W-E, in the part of the Gissar situated to the North of the Afghan-Tajik basin. This EW trending orientation prevails also in the south(-eastern) margin of the basin (series of North Afghanistan highs) and in the Murgab depression, the south-eastern deepest portion of the Amu Darya basin. It is in this area and in the eastern part of the Amu Darya basin that the Jurassic as well as the lower Cretaceous sediments are the thickest. The south-western part

  4. Active transtensional intracontinental basins: Walker Lane in the western Great Basin

    USGS Publications Warehouse

    Jayko, Angela S.; Bursik, Marcus

    2012-01-01

    The geometry and dimensions of sedimentary basins within the Walker Lane are a result of Plio-Pleistocene transtensive deformation and partial detachment of the Sierra Nevada crustal block from the North American plate. Distinct morpho-tectonic domains lie within this active transtensive zone. The northeast end of the Walker Lane is partly buried by active volcanism of the southern Cascades, and adjacent basins are filled or poorly developed. To the south, the basin sizes are moderate, 25–45km × 15–10 km, with narrow 8-12km wide mountain ranges mainly oriented N-S to NNE. These basins form subparallel arrays in discrete zones trending about 300° and have documented clockwise rotation. This is succeeded to the south by a releasing stepover domain ∼85-100km wide, where the basins are elongated E-W to ENE, small (∼15-30km long, 5-15km wide), and locally occupied by active volcanic centers. The southernmost part of the Walker Lane is structurally integrated, with high to extreme relief. Adjacent basins are elongate, 50-200km long and ∼5 -20km wide. Variations in transtensive basin orientations in the Walker Lane are largely attributable to variations in strain partitioning. Large basins in the Walker Lane have 2-6km displacement across basin bounding faults with up to 3 km of clastic accumulation based on gravity and drill hole data. The sedimentary deposits of the basins may include interbedded volcanic deposits with bimodal basaltic and rhyolitic associations. The basins may include lacustrine deposits that record a wide range of water chemistry from cold fresh water conditions to saline-evaporative

  5. On Restoring Sedimentary Basins for Post-Depositional Deformation - Paleozoic Basins of the Central Andes

    NASA Astrophysics Data System (ADS)

    Bahlburg, H.

    2015-12-01

    The reconstruction and interpretation of sedimentary basins incorporated into folded and thrusted mountain belts is strongly limited by the style and intensity of shortening. This problem is exacerbated if deformation is polyphasic as is the case for the Paleozoic basins in the central Andes. Some of these have been deformed by folding and thrusting during at least 3 events in the Late Ordovician, the Late Paleozoic and Cenozoic. A realistic reconstruction of the original basin dimensions and geometries from outcrops and maps appears to be almost impossible. We present results of a stepwise reconstruction of the Paleozoic basins of the central Andes by restoring basin areas and fills accounting for crustal shortening. The structurally most prominent feature of the central Andes is the Bolivian Orocline which accomodated shortening in the last 45 Ma on the order of between 300 and 500 km. In a first step basins were restored by accounting for Cenozoic rotation and shortening by deconvolving the basins using an enhanced version of the oroclinal bending model of Ariagada et al. (2008). Results were then restored stepwise for older deformation. Constraints on these subsequent steps are significantly poorer as values of shortening can be derived only from folds and thusts apparent in outcrops. The amount of shortening accomodated on unexposed and therefore unknown thrusts can not be quantified and is a significant source of error very likely leading to an underestimation of the amount of shortening. Accepting these limitations, basin restoration results in an increase in basin area by ≥100%. The volumes of stratigraphically controlled basin fills can now be redistributed over the wider, restored area, translating into smaller rates of accumulation and hence required subsidence. The restored rates conform to those of equivalent modern basin settings and permit a more realistic and actualistic analysis of subsidence drivers and the respective tectonic framework.

  6. Simulation of streamflow in small drainage basins in the southern Yampa River basin, Colorado

    USGS Publications Warehouse

    Parker, R.S.; Norris, J.M.

    1989-01-01

    Coal mining operations in northwestern Colorado commonly are located in areas that have minimal available water-resource information. Drainage-basin models can be a method for extending water-resource information to include periods for which there are no records or to transfer the information to areas that have no streamflow-gaging stations. To evaluate the magnitude and variability of the components of the water balance in the small drainage basins monitored, and to provide some method for transfer of hydrologic data, the U.S. Geological Survey 's Precipitation-Runoff Modeling System was used for small drainage basins in the southern Yampa River basin to simulate daily mean streamflow using daily precipitation and air-temperature data. The study area was divided into three hydrologic regions, and in each of these regions, three drainage basins were monitored. Two of the drainage basins in each region were used to calibrate the Precipitation-Runoff Modeling System. The model was not calibrated for the third drainage basin in each region; instead, parameter values were transferred from the model that was calibrated for the two drainage basins. For all of the drainage basins except one, period of record used for calibration and verification included water years 1976-81. Simulated annual volumes of streamflow for drainage basins used in calibration compared well with observed values; individual hydrographs indicated timing differences between the observed and simulated daily mean streamflow. Observed and simulated annual average streamflows compared well for the periods of record, but values of simulated high and low streamflows were different than observed values. Similar results were obtained when calibrated model parameter values were transferred to drainage basins that were uncalibrated. (USGS)

  7. Hydrological extreme events with Mike Basin

    NASA Astrophysics Data System (ADS)

    Pereira, M. G.; Carvalho, S.; Fernandes, L.; Caramelo, L.; Alencoão, A.

    2012-04-01

    This work is part of a broader project which aims to develop an integrated system to model and simulate of the hydrological cycle processes at river basin scale. All these processes involved in the dynamics of a watershed, which play an important role in the proper management and sustainable use of water resources, are influenced by many factors (e.g. soil use, vegetation cover, weather and climate) being of particular importance, all aspects related to the occurrence, amount and the spatial-temporal distribution of precipitation. We focus our work on the use of the MIKE Basin model and apply it to the Corgo River basin, which is a tributary of the Douro river, located in the Portuguese region of Trás-os-Montes and Alto Douro. Different datasets were used to characterize and model the river basin catchment hydrological processes, namely temperature, precipitation and runoff registered in several weather/hydrometric stations from the Institute of Information System for Water Resources (http://snirh.pt/) as well as land use/soil occupation and topography maps. The MIKE BASIN model runs on a Geographic Information System (GIS) to perform hydrologic modeling at basin-scale. This software allows a set of multisectoral water demands (domestic and industrial water supply, irrigation, hydropower generation, among others) and provides simulation and visualization in both space and time. We start by using the topography, soil type, soil use and vegetation cover of the region. Then the model is calibrated and tested, comparing model runoff estimates with observed data. Finally, the model is used to simulate the river basin catchment behavior to the typical conditions of the hydrological extreme events namely, heavy precipitation and drought. We present the geologic, hydrologic and climatologic characterization of the Corgo river catchment, list the most important factors that control the water availability in the river basin, describe the MIKE BASIN model calibration process

  8. Hydrocarbon systems in the East Texas basin: A basin modeling approach

    SciTech Connect

    Wescott, W.A.; Hood, W.C. )

    1993-09-01

    The East Texas basin is a prolific mature hydrocarbon province, producing oil and gas from several reservoirs and a variety of trap types. Much of the liquid hydrocarbons discovered in the basin are trapped in structures related to movement of the underlying Louann Salt. By determining the structural evolution of the basin, a framework was constructed to model the generation of hydrocarbons in the basin. Geochemical data indicate three major source horizons: the Smackover formation (Jurassic oil), shales in the Pearsal Group (Lower Cretaceous oil), and the Eagleford shale (Upper Cretaceous oil). The Jurassic source is mature throughout the basin and began to expel oil approximately 88 Ma. The distribution of Jurassic oil in Cretaceous reservoirs shows that vertical migration routes predominated. Lower Cretaceous source rocks are mature only in the deep, central part of the basin where expulsion began around 47 Ma Distribution of this oil type suggests that Lower Cretaceous source rocks occur only in localized areas of the East Texas basin. The Eagleford shale is immature in the main part of the basin, but it is mature south of the Angelina-Caldwell flexure, where is reached peak generation approximately 20 Ma. Lateral migration explains the distribution of this oil. Migration routes to the giant East Texas field may be 60 mi or more.

  9. Tularosa Basin Play Fairway Analysis: Partial Basin and Range Heat and Zones of Critical Stress Maps

    DOE Data Explorer

    Adam Brandt

    2015-11-15

    Interpolated maps of heat flow, temperature gradient, and quartz geothermometers are included as TIF files. Zones of critical stress map is also included as a TIF file. The zones are given a 5km diameter buffer. The study area is only a part of the Basin and Range, but it does includes the Tularosa Basin.

  10. Implication of drainage basin parameters of a tropical river basin of South India

    NASA Astrophysics Data System (ADS)

    Babu, K. J.; Sreekumar, S.; Aslam, Arish

    2016-03-01

    Drainage morphometry provides quantitative description of the drainage system which is an important aspect of the characterisation of watersheds. Chalakudi River is one of the important rivers of the South India which has attracted attention of many environmental scientists recently because of the proposed Athirapally Hydel Project across the river. SRTM (Shuttle Radar Topographic Mission) data were used for preparing DEM (Digital Elevation Model), Aspect Map and Slope Map. Geographical Information System (GIS) was used for the evaluation of linear, areal and relief aspects of morphometric parameters. The study reveals that the terrain exhibits dentritic and trellis pattern of drainage. The Chalakudi River Basin has a total area of 1,448.73 km2 and is designated as seventh-order basin. The drainage density of the basin is estimated as 2.54 and the lower-order streams mostly dominate the basin. The high basin relief indicates high runoff and sediment transport. The elongation ratio of the Chalakudi Basin is estimated as 0.48 and indicates that the shape of the basin is elongated. The development of stream segments in the basin area is more or less effected by rainfall. Relief ratio indicates that the discharge capability of watershed is very high and the groundwater potential is meagre. The low value of drainage density in spite of mountainous relief indicates that the area is covered by dense vegetation and resistant rocks permeated by fractures and joints. These studies are helpful in watershed development planning and wise utilization of natural resources.

  11. Carboniferous clastic-wedge stratigraphy, sedimentology, and foreland basin evolution: Black Warrior basin, Alabama and Mississippi

    SciTech Connect

    Hines, R.A.

    1986-05-01

    Carboniferous clastic-wedge stratigraphy and sedimentology in the Black Warrior basin of Alabama and Mississippi indicate deposition in an evolving foreland basin flanking the Appalachian-Ouachita fold-thrust belt. The strata reflect specific responses to foreland basin subsidence, orogenic activity, sediment supply, and dispersal systems. Definition of the regional stratigraphy of the clastic wedge provides for interpretation of the foreland basin subsidence history by enabling quantitative reconstruction of regional compaction and subsidence profiles. Comparison of the interpreted subsidence history with model profiles of foreland basin subsidence (predicted from loading and flexure of continental lithosphere) allows evaluation of mechanical models in terms of observed clastic-wedge sedimentology and stratigraphy. Mechanical modeling of foreland basin subsidence predicts formation of a flexural bulge that migrates cratonward ahead of the subsiding foreland basin during loading. In the Black Warrior basin, local stratigraphic thins, pinch-outs, and areas of marine-reworked sediments suggest migration of the flexural bulge. Comparison of flexural bulge migration with thermal maturation history allows evaluation of timing of stratigraphic trapping mechanisms with respect to onset of hydrocarbon generation.

  12. A new survey of multiring impact basins on Mars

    NASA Technical Reports Server (NTRS)

    Schultz, Richard A.; Frey, Herbert V.

    1990-01-01

    Literature data on Martian multiring impact basins with diameters greater than 500 km are summarized, and evidence is found for eight new such basins. The pattern of changes of basin morphology with increasing basin size suggests three subclasses of multiring basins: (1) multiring basins with diameters up to about 1850 km, which are characterized by the Orientale type concentric structure and cumulative frequency power law slope of -0.75; (2) the Argyre-type basins (with diameters between 1850 and 3600 km, defined by rugged concentric annnuli and a power law slope of nearly -2.0; and (3) the Chryse-type basins (with diameters greater than 3600 km), which exhibit multiple concentric rings and very shallow topographic profiles. Multiring basins are found in all parts of Mars, including the northern lowlands, Tharsis, and surrounding highlands, and are associated with much of the subsequent resurfacing of cratered terrain.

  13. Precambrian shield and basement tectonics in sedimentary basin analysis

    SciTech Connect

    Touborg, J.F.

    1984-04-01

    This study focused on the use of (1) regional structural analysis of basement and Precambrian rocks surrounding a sedimentary basin, and (2) tracing basement structures into the sedimentary basin. The structural analysis of the Precambrian shield has a fundamental bearing on interpretation of overlying sedimentary cover rocks. This is expressed in the southern part of the Hudson's Bay basin and its southeastern arm, the Moose River basin. For instance, the rims of both basins are controlled by faults or graben structures. Approximately 13 major fault systems with strike lengths of 200-300 km (125-186 mi) or more can be traced from the exposed Precambrian shield into the basin in terms of lineament arrays and/or aeromagnetic and/or gravity signature. The data suggest reactivation of faults during basin sedimentation. This type of basement structural analysis in areas adjacent to sedimentary basins can provide a valuable interpretation base for subsequent seismic surveys and basin evaluation.

  14. Perspective of gas exploration in Ying-Qiong Basin

    SciTech Connect

    He, Hanyi; Zhongtiang Hu )

    1996-01-01

    The Yinggehai and Qiongdongnan Basin (Ying-Qiong Basin) in the northwest part of the South China Sea is a Cenozoic sedimentary basin, which has fast-subsiding and thick sediments. The maximum Cenozoic sediments in the center part of the basin is 20,000 m. Six sets of source rocks with prevailing Type III kerogen were developed in the basin, which has a great potential for gas generation. Different types of reservoirs and traps, leading to different assemblages of source rocks, reservoirs, and cap rocks, form good gas pools. Abnormal high temperature and high pressure in the basin resulted in many mud diapirs and made the generation, migration, and accumulation of gas more colorful. Up to now, four gas fields have been discovered in the basin. A large number of anticlines and stratigraphic-lithologic traps in the basin provide an extensive area for gas exploration. The perspective of gas exploration in the basin is vast and bright.

  15. Perspective of gas exploration in Ying-Qiong Basin

    SciTech Connect

    He, Hanyi; Zhongtiang Hu

    1996-12-31

    The Yinggehai and Qiongdongnan Basin (Ying-Qiong Basin) in the northwest part of the South China Sea is a Cenozoic sedimentary basin, which has fast-subsiding and thick sediments. The maximum Cenozoic sediments in the center part of the basin is 20,000 m. Six sets of source rocks with prevailing Type III kerogen were developed in the basin, which has a great potential for gas generation. Different types of reservoirs and traps, leading to different assemblages of source rocks, reservoirs, and cap rocks, form good gas pools. Abnormal high temperature and high pressure in the basin resulted in many mud diapirs and made the generation, migration, and accumulation of gas more colorful. Up to now, four gas fields have been discovered in the basin. A large number of anticlines and stratigraphic-lithologic traps in the basin provide an extensive area for gas exploration. The perspective of gas exploration in the basin is vast and bright.

  16. The long wavelength topography of Beethoven and Tolstoj basins, Mercury

    NASA Astrophysics Data System (ADS)

    André, Sarah L.; Watters, Thomas R.; Robinson, Mark S.

    2005-11-01

    Topography derived from Mariner 10 stereo images is used to characterize the interior structure of two mercurian basins, Beethoven and Tolstoj. Beethoven and Tolstoj basins are shallow (~2.5 km and ~2 km deep, respectively) and relatively flat-floored. Beethoven basin has an interior topographic rise near the northwest margin. The topography of Beethoven and Tolstoj basins is similar to that of lunar mare-filled basins. Well-developed basin-concentric wrinkle ridges and arcuate graben associated with lunar mascons are absent in both Beethoven and Tolstoj basins. The lack of mascon tectonic features suggests that either 1) the mercurian basins have a relatively thin veneer of fill material, 2) Mercury's elastic lithosphere was too strong for significant lithospheric flexure and subsidence to occur, or 3) the basin fill material has little or no density contrast with the surrounding crust and thus exerts little net load on the mercurian lithosphere.

  17. On the soil moisture estimate at basin scale in Mediterranean basins with the ASAR sensor: the Mulargia basin case study

    NASA Astrophysics Data System (ADS)

    Fois, Laura; Montaldo, Nicola

    2017-04-01

    Soil moisture plays a key role in water and energy exchanges between soil, vegetation and atmosphere. For water resources planning and managementthesoil moistureneeds to be accurately and spatially monitored, specially where the risk of desertification is high, such as Mediterranean basins. In this sense active remote sensors are very attractive for soil moisture monitoring. But Mediterranean basinsaretypicallycharacterized by strong topography and high spatial variability of physiographic properties, and only high spatial resolution sensorsare potentially able to monitor the strong soil moisture spatial variability.In this regard the Envisat ASAR (Advanced Synthetic Aperture Radar) sensor offers the attractive opportunity ofsoil moisture mapping at fine spatial and temporal resolutions(up to 30 m, every 30 days). We test the ASAR sensor for soil moisture estimate in an interesting Sardinian case study, the Mulargia basin withan area of about 70 sq.km. The position of the Sardinia island in the center of the western Mediterranean Sea basin, its low urbanization and human activity make Sardinia a perfect reference laboratory for Mediterranean hydrologic studies. The Mulargia basin is a typical Mediterranean basinin water-limited conditions, and is an experimental basin from 2003. For soil moisture mapping23 satellite ASAR imagery at single and dual polarization were acquired for the 2003-2004period.Satellite observationsmay bevalidated through spatially distributed soil moisture ground-truth data, collected over the whole basin using the TDR technique and the gravimetric method, in days with available radar images. The results show that ASAR sensor observations can be successfully used for soil moisture mapping at different seasons, both wet and dry, but an accurate calibration with field data is necessary. We detect a strong relationship between the soil moisture spatial variability and the physiographic properties of the basin, such as soil water storage capacity

  18. From stretching to mantle exhumation in a triangular backarc basin (Vavilov basin, Tyrrhenian Sea, Western Mediterranean)

    NASA Astrophysics Data System (ADS)

    Milia, A.; Torrente, M. M.; Tesauro, M.

    2017-07-01

    In this study, we describe the mode of extension of the Vavilov, a fossil backarc basin, triangle-shaped (approximately 240 km-wide and 200 km-long), located between Sardinia margin to the west and Campania margin to the east. We combine the analysis of recent geophysical and geological data, in order to investigate the relationship between the crustal/sedimentary structure and the tectonic evolution of both apex and bathyal parts of the basin. With this aim, we interpret a large data set of multichannel seismic reflection profiles and several well logs. We observe that the apex basin corresponds to a sediment-balanced basin, with a sedimentary infill recording the episodes of basin evolution. In contrast, the distal basin corresponds to an underfilled basin, characterized by localized volcanic activity and a thin sedimentary succession that covers the exhumed mantle. The basin architecture reveals the occurrence of rift and supradetachment basins in the Vavilov rift zone. We find that the rifting of the Vavilov triangular basin was synchronous from the apex to distal regions around a single Euler pole located in Latium, between 5.1 and 1.8 Ma. The kinematic evolution of the Vavilov basin occurred in two stages: initial pure shear mode (5.1-4.0 Ma) that produced high-angle normal faults and syn-sedimentary wedges, followed by simple shear mode (4.0-1.8 Ma) that caused supradetachment basins filled by a Transgressive-Regressive succession that documents high subsidence rates (1.22 mm/y) in the apex region. The final stage of extension in the distal region led to: (i) complete embrittlement of the crust; (ii) direct continuation of crustal faults to upper mantle depth; (iii) serpentinization and mantle exhumation. Based on constraints on the present-day crustal structure of the Vavilov basin, we obtain a stretching value (β = 3.5) and extension rates (3 cm/y) in the bathyal zone analogous to those reported for magma-poor rifted margins. We propose a synchronous

  19. Kandik basin stratigraphy, sedimentology, and structure

    SciTech Connect

    Wiley, T.J.; Howell, D.G.; Kauffman-Linam, L.; Boundy-Sanders, S.; Murray, R.W.; Jones, D.L.

    1987-05-01

    East-central Alaska's Kandik basin is a structural remnant of a larger Permian to Cretaceous basin. Permian shallow-water Tahkandit Limestone and Step Conglomerate at the base of the sequence rest unconformably on Paleozoic chert-pebble conglomerate, siliceous shale, and limestone. These Permian rocks are overlain by Triassic to Lower Cretaceous open-ocean Glenn Shale, which grades upward into Lower Cretaceous (Valanginian) hummocky cross-bedded (outer shelf to upper slope) Keenan Quartzite. The quartzite grades upward into fine-grained north-northeast-flowing turbidites of the Biederman Argillite (undated). East-northeast-flowing pebbly turbidites of the Kathul Graywacke (undated) overlie Biederman strata. Locally, Cretaceous (Albian and younger) through Paleogene nonmarine rocks unconformably overlie the Kandik basin sequence. The Mesozoic part of the sequence is similar to that of Manley basin, northwest Yukon Territory, and much of the North Slope. East-directed flow for Kandik basin strata may require paleogeographic reconstructions involving local to large-scale palinspastic rotations or a western source of chert detritus. Deformation of the Mesozoic sequence in Kandik basin west of the US-Canada border shows northwest-southeast shortening. Shaly units are tightly folded with well-developed cleavage striking northeast. Strikes of beds swing from northeast to east in the extreme southwestern part of the basin, suggesting clockwise rotation. Thrust faults, reverse faults, and fold axes trend east to northeast; normal faults trend northwest. These relations are all consistent with, and probably are closely related to, right slip on the west-northwest-trending Tintina fault.

  20. Chlorofluorocarbon distributions in the deep Argentine Basin

    SciTech Connect

    Warner, M.J. ); Weiss, R.F. ); Smethie, W.M. Jr. )

    1990-01-09

    The seawater concentrations of the chlorofluorocarbons (CFCs) F-11 and F-12 were measured in the Argentine Basin during the Abyssal Boundary Current Studies (1986) and the South Atlantic Ventilation Experiment (1988-89) expeditions. In most regions of the basin, the CFC concentrations are above the detection limit (0.015 pmol/kg) in the entire water column. The main features of the F-11 and F-12 profiles in the deep waters of the Argentine Basin are concentration mixima at depths of 2 to 3 km and generally increasing concentrations towards the bottom. The mid-depth CFC minima are associated with the salinity maximum of Circumpolar Deep Water (CDW). The higher CFC concentrations at the seafloor are correlated with the colder temperatures of Antarctic Bottom Water (AABW). The CFC concentrations in AABW are highest on the eastern portion of the basin along 47[degrees]S and along the southern and western boundaries. These distributions are consistent with a separation of the inflowing AABW into a cyclonic gyre in the eastern portion of the basin and a western boundary current which carries a detectable CFC singal as far noth as 17[degrees]S. Between CDW and AABW, there are local CFC maxima and minima which are not associated with extrema in other hydrographic properties. The local minima are found on a mean density of 46.07 [sigma][sub 4], which is the upper bound of the water entering the Argentine Basin from the Weddell Sea (Reid, Deep-Sea Res., 1989 submitted). The local CFC maxima are found at about the 46.00 [sigma][sub 4] isopycnal surface. Water of this density apparently is of circumpolar origin. The presence of these local CFC extrema in this density range carries information on the time-dependent vertical mixing in the deep Argentine Basin.

  1. Hydrogeology of the West Siberian Basin

    SciTech Connect

    Hoover, K.A.; Foley, M.G.; Bradley, D.J.

    1996-12-31

    Nuclear fuel cycle activities of the former Soviet Union (FSU) have resulted in significant contamination of the environment in western Siberia. The radioactive releases to surface waters and the surficial environment from the Mayak site are the largest known in the world. However, they are dwarfed by the amounts of liquid wastes injected into the subsurface at Tomsk and Krasnoyarsk since the early 1960s. This paper provides the status of efforts by Pacific Northwest National Laboratory to quantify the regional hydrogeologic context for potential contaminant migration from areas in western Siberia. The West Siberian Basin is the largest platformal basin and region of low relief on earth. Ground water in the West Siberian Basin is contained in a single geologic structure (i.e., a single basin). Hydrogeologic cross sections indicate that freshwater wedges are present in both unconfined and confined aquifers (as well as in Paleozoic rocks) in the highland regions that rim the basin. The authors developed a 13-layer, finite-element computer model of the West Siberian Basin primarily based on GIS integration of data from geologic studies. The top of the hydrologic system was assumed to coincide with a water table derived from smoothed topography and surface-water occurrences; precipitation supplied the water, and the topographic gradient of the water table supplied the driving force for ground-water flow. The general directions of calculated ground-water flow suggest that (1) the major rivers act as discharge areas, with upwelling below the rivers extending down into the basement rocks; and (2) ground-water divides that penetrate the entire thickness of the model are evident between the major rivers. Their results suggest that contaminants entering the confined aquifer system may eventually migrate to the surface, discharging within major rivers, rather than remaining confined for long travel distances within the basin sediments.

  2. Hydrogeology of the West Siberian Basin

    SciTech Connect

    Foley, M.G.; Bradley, D.J.; Cole, C.R.

    1996-08-01

    Nuclear fuel cycle activities of the former Soviet Union (FSU) have resulted in extensive radioactive contaminant releases to the environment in western Siberia. We are developing three-dimensional numerical models of the hydrogeology and potential contaminant migration in the West Siberian Basin. We have assumed that ground-water flow in the West Siberian Basin is topographically driven, with recharge to the basin occurring in the highlands on the west, east, and south, and internal discharge localized in numerous river valleys and lakes that ultimately discharge north to the ocean. We are modeling the regional hydrogeology as three-dimensional, steady-state, saturated flow that is recharged from above. We acquired topographic, geologic, hydrostratigraphic, hydrogeologic, and water-balance data for the West Siberian Basin and constructed a regional water table. We correlated and combined 70 different rock types derived from published descriptions of West Siberian Basin rocks into 17 rock types appropriate for assignment of hydrogeologic properties on the basis of spatial heterogeneity and constituent (i.e., sand, silt, and clay) diversity. Examination of resulting three-dimensional assemblages of rock types showed that they were consistent with published and inferred paleogeography and depositional processes. Calibrating the basin`s moisture balance (i.e., recharge and discharge) to the derived water table determined plausible input parameter values for unknowns such as hydraulic conductivities. The general directions of calculated ground-water flow suggest that major rivers act as discharge areas, with upwelling below the rivers extending down into the basement rocks, and that ground-water divides that penetrate the entire thickness of the model are evident between major rivers.

  3. Quantifying mesoscale eddies in the Lofoten Basin

    NASA Astrophysics Data System (ADS)

    Raj, R. P.; Johannessen, J. A.; Eldevik, T.; Nilsen, J. E. Ø.; Halo, I.

    2016-07-01

    The Lofoten Basin is the most eddy rich region in the Norwegian Sea. In this paper, the characteristics of these eddies are investigated from a comprehensive database of nearly two decades of satellite altimeter data (1995-2013) together with Argo profiling floats and surface drifter data. An automated method identified 1695/1666 individual anticyclonic/cyclonic eddies in the Lofoten Basin from more than 10,000 altimeter-based eddy observations. The eddies are found to be predominantly generated and residing locally. The spatial distributions of lifetime, occurrence, generation sites, size, intensity, and drift of the eddies are studied in detail. The anticyclonic eddies in the Lofoten Basin are the most long-lived eddies (>60 days), especially in the western part of the basin. We reveal two hotspots of eddy occurrence on either side of the Lofoten Basin. Furthermore, we infer a cyclonic drift of eddies in the western Lofoten Basin. Barotropic energy conversion rates reveals energy transfer from the slope current to the eddies during winter. An automated colocation of surface drifters trapped inside the altimeter-based eddies are used to corroborate the orbital speed of the anticyclonic and cyclonic eddies. Moreover, the vertical structure of the altimeter-based eddies is examined using colocated Argo profiling float profiles. Combination of altimetry, Argo floats, and surface drifter data is therefore considered to be a promising observation-based approach for further studies of the role of eddies in transport of heat and biomass from the slope current to the Lofoten Basin.

  4. Petroleum in the Junggar basin, northwestern China

    NASA Astrophysics Data System (ADS)

    Taner, Irfan; Kamen-Kaye, Maurice; Meyerhoff, Arthur A.

    The Junggar basin occupies a large triangular area of some 130 000 km 2 in northwestern China. Situated between the Altay Shan (Altay Range) on the northeast and the Tian Shan (Tian Range) on the southwest, and between lesser ranges around the remainder of its periphery, the Junggar basin is completely intermontane. Its history as a basin began in the Permian, and continued as various uplifts and downwarps evolved. Through the Paleozoic the characteristics of the Junggar basin area were largely geosynclinal and marine. Its post-Permian development took place exclusively in continental regimes. Inhabitants of the Junggar basin have known and utilized its numerous oil and asphalt seeps and its spectacular spreads of asphalt for more than 2000 years, especially in the Karamay-Urho thrust belt near the northwestern rim. The first discovery of oil in the modern sense came at Dushanzi, one of the steeply folded anticlines of theÜrümqi foredeep near the southern rim. The first shallow oil in the Karamay-Urho thrust belt came in 1937, followed by commercial production in the Karamay field in 1955. Output continued to be modest until wells were drilled through local thrusts and reverse faults in the early 1980s. By 1985, cumulative production of the Karamay group of fields had reached 42,000,000 t (metric tonnes) (306,000,000 bbl), with a calculated minimum ultimate recovery of 280,000,000 t (2 billion bbl). Principal production comes from Permian and Triassic strata in continental facies. Apart from marine Mid and Upper Carboniferous strata, source rocks occur mainly in fine-grained lacustrine detrital beds of the Permian, the Triassic, the Jurassic and the Tertiary. Several uplifts and downwarps elsewhere in the Junggar basin remain to be drilled comprehensively. Results from such drilling may enhance the very important position that the Junggar already has attained in the hierarchy of China's onshore basins.

  5. Evapotranspiration seasonality across the Amazon Basin

    NASA Astrophysics Data System (ADS)

    Eiji Maeda, Eduardo; Ma, Xuanlong; Wagner, Fabien Hubert; Kim, Hyungjun; Oki, Taikan; Eamus, Derek; Huete, Alfredo

    2017-06-01

    Evapotranspiration (ET) of Amazon forests is a main driver of regional climate patterns and an important indicator of ecosystem functioning. Despite its importance, the seasonal variability of ET over Amazon forests, and its relationship with environmental drivers, is still poorly understood. In this study, we carry out a water balance approach to analyse seasonal patterns in ET and their relationships with water and energy drivers over five sub-basins across the Amazon Basin. We used in situ measurements of river discharge, and remotely sensed estimates of terrestrial water storage, rainfall, and solar radiation. We show that the characteristics of ET seasonality in all sub-basins differ in timing and magnitude. The highest mean annual ET was found in the northern Rio Negro basin (˜ 1497 mm year-1) and the lowest values in the Solimões River basin (˜ 986 mm year-1). For the first time in a basin-scale study, using observational data, we show that factors limiting ET vary across climatic gradients in the Amazon, confirming local-scale eddy covariance studies. Both annual mean and seasonality in ET are driven by a combination of energy and water availability, as neither rainfall nor radiation alone could explain patterns in ET. In southern basins, despite seasonal rainfall deficits, deep root water uptake allows increasing rates of ET during the dry season, when radiation is usually higher than in the wet season. We demonstrate contrasting ET seasonality with satellite greenness across Amazon forests, with strong asynchronous relationships in ever-wet watersheds, and positive correlations observed in seasonally dry watersheds. Finally, we compared our results with estimates obtained by two ET models, and we conclude that neither of the two tested models could provide a consistent representation of ET seasonal patterns across the Amazon.

  6. Bathymetry of four deep Baltic basins

    NASA Astrophysics Data System (ADS)

    Reissmann, Jan H.

    1999-12-01

    Extensive hydrographic field campaigns were carried out by the Institute for Baltic Sea Research Warnemuende (IOW) in four deep basins of the Baltic Sea during different seasons from 1996 to 1999. The spreading and transformation of dense deep water was studied using a fixed eddy-resolving station grid within the framework of the German-Russian project MESODYN (meso scale dynamics). The station spacing of each survey was 2.5 nm, which corresponds to a station distance of 2.5’ meridionally and about 4.5’ zonally. Using the Global Positioning System (GPS) for navigation, statistical uncertainties of the mean ship position during station work are on the order of ± 37 m in each direction. In this way, shipborne echosounders provided representative topographic data sets for the deepest parts of the Arkona Basin, the Bornholm Basin, the Stolpe Furrow and the Eastern Gotland Basin. The absolute accuracy of water depths lies in the range of ± 1 m while its spatially determined mean standard deviation does not exceed ± 0.2 m in each survey. The resulting topographic maps are presented. Derived direction tendencies of deep circulation patterns result from conservation of their potential vorticity above topographic irregularities. Resulting vectors suggest a permanent tendency for cyclonic circulation within all four deep Baltic basins. The most intense topographic control of the deep circulation must be expected above both the eastern and western flanks of the Eastern Gotland Basin. Beneath closed bathymetric contours, depthareavolume relationships have been estimated numerically to characterise the storage capacity of each basin for dense deep water.

  7. Chicxulub impact basin: Gravity characteristics and implications for basin morphology and deep structure

    NASA Technical Reports Server (NTRS)

    Sharpton, Virgil L.; Burke, Kevin; Hall, Stuart A.; Lee, Scott; Marin, Luis E.; Suarez, Gerardo; Quezada-Muneton, Juan Manuel; Urrutia-Fucugauchi, Jaime

    1993-01-01

    The K-T-aged Chicxulub Impact Structure is buried beneath the Tertiary carbonate rocks of the Northern Yucatan Platform. Consequently its morphology and structure are poorly understood. Reprocessed Bouguer (onshore) and Free Air (offshore) gravity data over Northern Yucatan reveal that Chicxulub may be a 200-km-diameter multi-ring impact basin with at least three concentric basin rings. The positions of these rings follow the square root of 2 spacing rule derived empirically from analysis of multi-ring basins on other planets indicating that these rings probably correspond to now-buried topographic basin rings. A forward model of the gravity data along a radial transect from the southwest margin of the structure indicates that the Chicxulub gravity signature is compatible with this interpretation. We estimate the basin rim diameter to be 204 +/- 16 km and the central peak ring diameter (D) is 104 +/- 6 km.

  8. Potential for deep basin-centered gas accumulation in Hanna Basin, Wyoming

    USGS Publications Warehouse

    Wilson, Michael S.; Dyman, Thaddeus S.; Nuccio, Vito F.

    2001-01-01

    The potential for a continuous-type basin-centered gas accumulation in the Hanna Basin in Carbon County, Wyoming, is evaluated using geologic and production data including mud-weight, hydrocarbon-show, formation-test, bottom-hole-temperature, and vitrinite reflectance data from 29 exploratory wells. This limited data set supports the presence of a hypothetical basin-centered gas play in the Hanna Basin. Two generalized structural cross sections illustrate our interpretations of possible abnormally pressured compartments. Data indicate that a gas-charged, overpressured interval may occur within the Cretaceous Mowry, Frontier, and Niobrara Formations at depths below 10,000 ft along the southern and western margins of the basin. Overpressuring may also occur near the basin center within the Steele Shale and lower Mesaverde Group section at depths below 18,000 to 20,000 ft. However, the deepest wells drilled to date (12,000 to 15,300 ft) have not encountered over-pressure in the basin center. This overpressured zone is likely to be relatively small (probably 20 to 25 miles in diameter) and is probably depleted of gas near major basement reverse faults and outcrops where gas may have escaped. Water may have invaded reservoirs through outcrops and fracture zones along the basin margins, creating an extensive normally pressured zone. A zone of subnormal pressure also may exist below the water-saturated, normal-pressure zone and above the central zone of overpressure. Subnormal pressures have been interpreted in the center of the Hanna Basin at depths ranging from 10,000 to 25,000 ft based on indirect evidence including lost-circulation zones. Three wells on the south side of the basin, where the top of the subnormally pressured zone is interpreted to cut across stratigraphic boundaries, tested the Niobrara Formation and recovered gas and oil shows with very low shut-in pressures.

  9. Effect of basin physical characteristics on solute fluxes in nine alpine/subalpine basins, Colorado, USA