Assessing the Effects of Water Right Purchases on Stream Temperatures and Fish Habitat

NASA Astrophysics Data System (ADS)

Elmore, L.; Null, S. E.

2012-12-01

Warm stream temperature and low flow conditions are limiting factors for native trout species in Nevada's Walker River. Water rights purchases are being considered to increase instream flow and improve habitat conditions. However, the effect of water rights purchases on stream temperatures and fish habitat have yet to be assessed. Manipulating flow conditions affect stream temperatures by altering water depth, velocity, and thermal mass. This study uses the River Modeling System (RMSv4), an hourly, physically-based hydrodynamic and water quality model, to estimate flows and stream temperatures in the Walker River. The model is developed for two wet years (2010-2011). Study results highlight reaches with cold-water habitat that is suitable for native trout species. Previous research on the Walker River has evaluated instream flow changes with water rights purchases. This study incorporates stream temperatures as a proxy for trout habitat, and thus explicitly incorporates water quality and fish habitat into decision-making regarding water rights purchases. Walker River

Simulation of hydrodynamics, water quality, and lake sturgeon habitat volumes in Lake St. Croix, Wisconsin and Minnesota, 2013

USGS Publications Warehouse

Smith, Erik A.; Kiesling, Richard L.; Ziegeweid, Jeffrey R.; Elliott, Sarah M.; Magdalene, Suzanne

2018-01-05

Lake St. Croix is a naturally impounded, riverine lake that makes up the last 40 kilometers of the St. Croix River. Substantial land-use changes during the past 150 years, including increased agriculture and urban development, have reduced Lake St. Croix water-quality and increased nutrient loads delivered to Lake St. Croix. A recent (2012–13) total maximum daily load phosphorus-reduction plan set the goal to reduce total phosphorus loads to Lake St. Croix by 20 percent by 2020 and reduce Lake St. Croix algal bloom frequencies. The U.S. Geological Survey, in cooperation with the National Park Service, developed a two-dimensional, carbon-based, laterally averaged, hydrodynamic and water-quality model, CE–QUAL–W2, that addresses the interaction between nutrient cycling, primary production, and trophic dynamics to predict responses in the distribution of water temperature, oxygen, and chlorophyll a. Distribution is evaluated in the context of habitat for lake sturgeon, including a combination of temperature and dissolved oxygen conditions termed oxy-thermal habitat.The Lake St. Croix CE–QUAL–W2 model successfully reproduced temperature and dissolved oxygen in the lake longitudinally (from upstream to downstream), vertically, and temporally over the seasons. The simulated water temperature profiles closely matched the measured water temperature profiles throughout the year, including the prediction of thermocline transition depths (often within 1 meter), the absolute temperature of the thermocline transitions (often within 1.0 degree Celsius), and profiles without a strong thermocline transition. Simulated dissolved oxygen profiles matched the trajectories of the measured dissolved oxygen concentrations at multiple depths over time, and the simulated concentrations matched the depth and slope of the measured concentrations.Additionally, trends in the measured water-quality data were captured by the model simulation, gaining some potential insights into the

Seasonal and interannual effects of hypoxia on fish habitat quality in central Lake Erie

USGS Publications Warehouse

Arend, Kristin K.; Beletsky, Dmitry; DePinto, Joseph; Ludsin, Stuart A.; Roberts, James J.; Rucinski, Daniel K.; Scavia, Donald; Schwab, David J.; Höök, Tomas O.

2011-01-01

1. Hypoxia occurs seasonally in many stratified coastal marine and freshwater ecosystems when bottom dissolved oxygen (DO) concentrations are depleted below 2–3 mg O2 L-1. 2. We evaluated the effects of hypoxia on fish habitat quality in the central basin of Lake Erie from 1987 to 2005, using bioenergetic growth rate potential (GRP) as a proxy for habitat quality. We compared the effect of hypoxia on habitat quality of (i) rainbow smelt, Osmerus mordax mordax Mitchill (young-of-year, YOY, and adult), a cold-water planktivore, (ii) emerald shiner, Notropis atherinoides Rafinesque (adult), a warm-water planktivore, (iii) yellow perch, Perca flavescens Mitchill (YOY and adult), a cool-water benthopelagic omnivore and (iv) round goby Neogobius melanostomus Pallas (adult) a eurythermal benthivore. Annual thermal and DO profiles were generated from 1D thermal and DO hydrodynamics models developed for Lake Erie’s central basin. 3. Hypoxia occurred annually, typically from mid-July to mid-October, which spatially and temporally overlaps with otherwise high benthic habitat quality. Hypoxia reduced the habitat quality across fish species and life stages, but the magnitude of the reduction varied both among and within species because of the differences in tolerance to low DO levels and warm-water temperatures. 4. Across years, trends in habitat quality mirrored trends in phosphorus concentration and water column oxygen demand in central Lake Erie. The per cent reduction in habitat quality owing to hypoxia was greatest for adult rainbow smelt and round goby (mean: -35%), followed by adult emerald shiner (mean: -12%), YOY rainbow smelt (mean: -10%) and YOY and adult yellow perch (mean: -8.5%). 5. Our results highlight the importance of differential spatiotemporally interactive effects of DO and temperature on relative fish habitat quality and quantity. These effects have the potential to influence the performance of individual fish species as well as population dynamics

Water quality and habitat conditions in upper Midwest streams relative to riparian vegetation and soil characteristics, August 1997 : study design, methods, and data

USGS Publications Warehouse

Sorenson, S.K.; Porter, S.D.; Akers, K.B.; Harris, M.A.; Kalkhoff, S.J.; Lee, K.E.; Roberts, L.; Terrio, P.J.

1999-01-01

Water-chemistry, biological, and habitat data were collected from 70 sites on Midwestern streams during August 1997 as part of an integrated, regional water-quality assessment by the U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program. The study area includes the Corn Belt region of southern Minnesota, eastern Iowa, and west-central Illinois, one of the most intensive and productive agricultural regions of the world. The focus of the study was to evaluate the condition of woodedriparian zones and the influence of basin soildrainage characteristics on water quality and biological-community responses. This report includes a description of the study design and site-characterization process, sample-collection and processing methods, laboratory methods, quality-assurance procedures, and summaries of data on nutrients, herbicides and metabolites, stream productivity and respiration, biological communities, habitat conditions, and agriculturalchemical and land-use information.

Systems Modeling to Improve River, Riparian, and Wetland Habitat Quality and Area

NASA Astrophysics Data System (ADS)

Alafifi, A.

2016-12-01

The suitability of watershed habitat to support the livelihood of its biota primarily depends on managing flow. Ecological restoration requires finding opportunities to reallocate available water in a watershed to increase ecological benefits and maintain other beneficial uses. We present the Watershed Area of Suitable Habitat (WASH) systems model that recommends reservoir releases, streamflows, and water allocations throughout a watershed to maximize the ecosystem habitat quality. WASH embeds and aggregates area-weighted metrics for aquatic, floodplain, and wetland habitat components as an ecosystem objective to maximize, while maintaining water deliveries for domestic and agricultural uses, mass balance, and available budget for restoration actions. The metrics add spatial and temporal functionality and area coverage to traditional habitat quality indexes and can accommodate multiple species of concern. We apply the WASH model to the Utah portion of the Bear River watershed which includes 8 demand sites, 5 reservoirs and 37 nodes between the Utah-Idaho state line and the Great Salt Lake. We recommend water allocations to improve current conservation efforts and show tradeoffs between human and ecosystem uses of water. WASH results are displayed on an open-source web mapping application that allows stakeholders to access, visualize, and interact with the model data and results and compare current and model-recommended operations. Results show that the Bear River is largely developed and appropriated for human water uses. However, increasing reservoirs winter and early spring releases and minimizing late spring spill volumes can significantly improve habitat quality without harming agricultural or urban water users. The spatial and temporal reallocation of spring spills to environmental uses creates additional 70 thousand acres of suitable habitat in the watershed without harming human users. WASH also quantifies the potential environmental gains and losses from

Local and regional effects of reopening a tidal inlet on estuarine water quality, seagrass habitat, and fish assemblages

NASA Astrophysics Data System (ADS)

Milbrandt, Eric C.; Bartleson, Richard D.; Coen, Loren D.; Rybak, Olexandr; Thompson, Mark A.; DeAngelo, Jacquelyn A.; Stevens, Philip W.

2012-06-01

Blind Pass is an inlet that separates Sanibel and Captiva Islands in southwest Florida but has historically closed and opened by both anthropogenic and natural processes. In July 2010, a dredging project to open the small inlet between the two barrier islands was completed. The objective of this study was to use and supplement ongoing estuary-monitoring programs to examine the responses of water quality, seagrass habitat metrics, and fish assemblages both in the immediate vicinity of the inlet and at broader scales (up to 40 km2). As far as we are aware, there are no previous studies with this intensity of sampling, both before and after an inlet opening. Significant increases in salinity and turbidity were observed inside Blind Pass, with significant decreases in CDOM and chlorophyll a, however, the effects were not far-reaching and limited to less than 1.7 km from the inlet within Pine Island Sound. Seagrass habitat metrics were expected to respond rapidly after the inlet was opened given the reduced light attenuation. However, there were no changes in shoot densities, species composition, and epiphytic algae within the approximately one-year duration of the study. The reopening of the pass did not substantially change fish assemblage structure, except for those from deeper habitats. Although immediate increases in the abundances of estuarine-dependent species were predicted in shallow habitats post opening, this did not occur. In conclusion, the effects of reopening a relatively small ocean inlet on water quality were apparent in the immediate vicinity of the inlet (within 1.7 km), but far-reaching effects on water quality, seagrass metrics, and fish assemblages were not immediately apparent in this well-flushed estuary. If subtle changes in tidal exchange and circulation affect productivity of seagrasses or its fish assemblages at broad scales, it may take several years to reach a steady state.

Dissolved oxygen, stream temperature, and fish habitat response to environmental water purchases.

PubMed

Null, Sarah E; Mouzon, Nathaniel R; Elmore, Logan R

2017-07-15

Environmental water purchases are increasingly used for ecological protection. In Nevada's Walker Basin (western USA), environmental water purchases augment streamflow in the Walker River and increase lake elevation of terminal Walker Lake. However, water quality impairments like elevated stream temperatures and low dissolved oxygen concentrations also limit ecosystems and species, including federally-threatened Lahontan cutthroat trout. In this paper, we prioritize water volumes and locations that most enhance water quality for riverine habitat from potential environmental water rights purchases. We monitored and modeled streamflows, stream temperatures, and dissolved oxygen concentrations using River Modeling System, an hourly, physically-based hydrodynamic and water quality model. Modeled environmental water purchases ranged from average daily increases of 0.11-1.41 cubic meters per second (m 3 /s) during 2014 and 2015, two critically dry years. Results suggest that water purchases consistently cooled maximum daily stream temperatures and warmed nightly minimum temperatures. This prevented extremely low dissolved oxygen concentrations below 5.0 mg/L, but increased the duration of moderate conditions between 5.5 and 6.0 mg/L. Small water purchases less than approximately 0.71 m 3 /s per day had little benefit for Walker River habitat. Dissolved oxygen concentrations were affected by upstream environmental conditions, where suitable upstream water quality improved downstream conditions and vice versa. Overall, this study showed that critically dry water years degrade environmental water quality and habitat, but environmental water purchases of at least 0.71 m 3 /s were promising for river restoration. Published by Elsevier Ltd.

Potential interactions among disease, pesticides, water quality and adjacent land cover in amphibian habitats in the United States.

PubMed

Battaglin, W A; Smalling, K L; Anderson, C; Calhoun, D; Chestnut, T; Muths, E

2016-10-01

To investigate interactions among disease, pesticides, water quality, and adjacent land cover, we collected samples of water, sediment, and frog tissue from 21 sites in 7 States in the United States (US) representing a variety of amphibian habitats. All samples were analyzed for >90 pesticides and pesticide degradates, and water and frogs were screened for the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) using molecular methods. Pesticides and pesticide degradates were detected frequently in frog breeding habitats (water and sediment) as well as in frog tissue. Fungicides occurred more frequently in water, sediment, and tissue than was expected based upon their limited use relative to herbicides or insecticides. Pesticide occurrence in water or sediment was not a strong predictor of occurrence in tissue, but pesticide concentrations in tissue were correlated positively to agricultural and urban land, and negatively to forested land in 2-km buffers around the sites. Bd was detected in water at 45% of sites, and on 34% of swabbed frogs. Bd detections in water were not associated with differences in land use around sites, but sites with detections had colder water. Frogs that tested positive for Bd were associated with sites that had higher total fungicide concentrations in water and sediment, but lower insecticide concentrations in sediments relative to frogs that were Bd negative. Bd concentrations on frog swabs were positively correlated to dissolved organic carbon, and total nitrogen and phosphorus, and negatively correlated to pH and water temperature. Data were collected from a range of locations and amphibian habitats and represent some of the first field-collected information aimed at understanding the interactions between pesticides, land use, and amphibian disease. These interactions are of particular interest to conservation efforts as many amphibians live in altered habitats and may depend on wetlands embedded in these landscapes to survive

Potential interactions among disease, pesticides, water quality and adjacent land cover in amphibian habitats in the United States

USGS Publications Warehouse

Battaglin, William A.; Smalling, Kelly L.; Anderson, Chauncey; Calhoun, Daniel L.; Chestnut, Tara E.; Muths, Erin L.

2016-01-01

To investigate interactions among disease, pesticides, water quality, and adjacent land cover, we collected samples of water, sediment, and frog tissue from 21 sites in 7 States in the United States (US) representing a variety of amphibian habitats. All samples were analyzed for > 90 pesticides and pesticide degradates, and water and frogs were screened for the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) using molecular methods. Pesticides and pesticide degradates were detected frequently in frog breeding habitats (water and sediment) as well as in frog tissue. Fungicides occurred more frequently in water, sediment, and tissue than was expected based upon their limited use relative to herbicides or insecticides. Pesticide occurrence in water or sediment was not a strong predictor of occurrence in tissue, but pesticide concentrations in tissue were correlated positively to agricultural and urban land, and negatively to forested land in 2-km buffers around the sites. Bd was detected in water at 45% of sites, and on 34% of swabbed frogs. Bd detections in water were not associated with differences in land use around sites, but sites with detections had colder water. Frogs that tested positive for Bd were associated with sites that had higher total fungicide concentrations in water and sediment, but lower insecticide concentrations in sediments relative to frogs that were Bd negative. Bd concentrations on frog swabs were positively correlated to dissolved organic carbon, and total nitrogen and phosphorus, and negatively correlated to pH and water temperature.Data were collected from a range of locations and amphibian habitats and represent some of the first field-collected information aimed at understanding the interactions between pesticides, land use, and amphibian disease. These interactions are of particular interest to conservation efforts as many amphibians live in altered habitats and may depend on wetlands embedded in these landscapes to

Comparison of macroinvertebrate-derived stream quality metrics between snag and riffle habitats

USGS Publications Warehouse

Stepenuck, K.F.; Crunkilton, R.L.; Bozek, Michael A.; Wang, L.

2008-01-01

We compared benthic macroinvertebrate assemblage structure at snag and riffle habitats in 43 Wisconsin streams across a range of watershed urbanization using a variety of stream quality metrics. Discriminant analysis indicated that dominant taxa at riffles and snags differed; Hydropsychid caddisflies (Hydropsyche betteni and Cheumatopsyche spp.) and elmid beetles (Optioservus spp. and Stenemlis spp.) typified riffles, whereas isopods (Asellus intermedius) and amphipods (Hyalella azteca and Gammarus pseudolimnaeus) predominated in snags. Analysis of covariance indicated that samples from snag and riffle habitats differed significantly in their response to the urbanization gradient for the Hilsenhoff biotic index (BI), Shannon's diversity index, and percent of filterers, shredders, and pollution intolerant Ephemeroptera, Plecoptera, and Trichoptera (EPT) at each stream site (p ??? 0.10). These differences suggest that although macroinvertebrate assemblages present in either habitat type are sensitive to detecting the effects of urbanization, metrics derived from different habitats should not be intermixed when assessing stream quality through biomonitoring. This can be a limitation to resource managers who wish to compare water quality among streams where the same habitat type is not available at all stream locations, or where a specific habitat type (i.e., a riffle) is required to determine a metric value (i.e., BI). To account for differences in stream quality at sites lacking riffle habitat, snag-derived metric values can be adjusted based on those obtained from riffles that have been exposed to the same level of urbanization. Comparison of nonlinear regression equations that related stream quality metric values from the two habitat types to percent watershed urbanization indicated that snag habitats had on average 30.2 fewer percent EPT individuals, a lower diversity index value than riffles, and a BI value of 0.29 greater than riffles. ?? 2008 American Water

Riparian buffer design guidelines for water quality and wildlife habitat functions on agricultural landscapes in the Intermountain West

Treesearch

Craig W. Johnson; Susan Buffler

2008-01-01

Intermountain West planners, designers, and resource managers are looking for science-based procedures for determining buffer widths and management techniques that will optimize the benefits riparian ecosystems provide. This study reviewed the riparian buffer literature, including protocols used to determine optimum buffer widths for water quality and wildlife habitat...

Water-quality, stream-habitat, and biological data for West Fork Double Bayou, Cotton Bayou, and Hackberry Gully, Chambers County, Texas, 2006-07

USGS Publications Warehouse

Brown, Dexter W.; Turco, Michael J.

2009-01-01

The U.S. Geological Survey (USGS), in cooperation with the Houston-Galveston Area Council and the Texas Commission on Environmental Quality, collected water-quality, stream-habitat, and biological data from two sites at West Fork Double Bayou, two sites at Cotton Bayou, and one site at Hackberry Gully in Chambers County, Texas, during July 2006-August 2007. Water-quality data-collection surveys consisted of synoptic 24-hour continuous measurements of water temperature, pH, specific conductance, and dissolved oxygen at the five sites and periodically collected samples at four sites analyzed for several properties and constituents of interest. Stream-habitat data were collected at each of four sites three times during the study. At each site, a representative stream reach was selected and within this reach, five evenly spaced stream transects were determined. At each transect, stream attributes (wetted channel width, water depth, bottom material, instream cover) and riparian attributes (bank slope and erosion potential, width of natural vegetation, type of vegetation, percentage tree canopy) were measured. Benthic macroinvertebrate and fish data were collected from the same reaches identified for habitat evaluation. A total of 2,572 macroinvertebrate individuals were identified from the four reaches; insect taxa were more abundant than non-insect taxa at all reaches. A total of 1,082 fish, representing 30 species and 13 families, were collected across all reaches. Stream-habitat and aquatic biota (benthic macroinvertebrates and fish) were assessed at the four sites to evaluate aquatic life use. Habitat quality index scores generally indicated 'intermediate' aquatic life use at most reaches. Benthic macroinvertebrate metrics scores indicated generally 'intermediate' aquatic life use for the West Fork Double Bayou reaches and generally 'high' aquatic life use for the Cotton Bayou and Hackberry Gully reaches. Index of biotic integrity scores for fish indicated generally

Threats of habitat and water-quality degradation to mussel diversity in the Meramec River Basin, Missouri, USA

USGS Publications Warehouse

Hinck, Jo Ellen; Ingersoll, Christopher G.; Wang, Ning; Augspurger, Tom; Barnhart, M. Christopher; McMurray, Stephen E.; Roberts, Andrew D.; Schrader, Lynn

2011-01-01

The Meramec River Basin in east-central Missouri is an important stronghold for native freshwater mussels (Order: Unionoida) in the United States. Whereas the basin supports more than 40 mussel species, previous studies indicate that the abundance and distribution of most species are declining. Therefore, resource managers have identified the need to prioritize threats to native mussel populations in the basin and to design a mussel monitoring program. The objective of this study was to identify threats of habitat and water-quality degradation to mussel diversity in the basin. Affected habitat parameters considered as the main threats to mussel conservation included excess sedimentation, altered stream geomorphology and flow, effects on riparian vegetation and condition, impoundments, and invasive non-native species. Evaluating water-quality parameters for conserving mussels was a main focus of this study. Mussel toxicity data for chemical contaminants were compared to national water quality criteria (NWQC) and Missouri water quality standards (MWQS). However, NWQC and MWQS have not been developed for many chemical contaminants and some MWQS may not be protective of native mussel populations. Toxicity data indicated that mussels are sensitive to ammonia, copper, temperature, certain pesticides, pharmaceuticals, and personal care products; these compounds were identified as the priority water-quality parameters for mussel conservation in the basin. Measures to conserve mussel diversity in the basin include expanding the species and life stages of mussels and the list of chemical contaminants that have been assessed, establishing a long term mussel monitoring program that measures physical and chemical parameters of high priority, conducting landscape scale modeling to predict mussel distributions, determining sublethal effects of primary contaminants of concern, deriving risk-based guidance values for mussel conservation, and assessing the effects of wastewater

Effects of flow diversions on water and habitat quality: Examples from California's highly manipulated Sacramento–San Joaquin Delta

USGS Publications Warehouse

Monsen, Nancy E.; Cloern, James E.; Burau, Jon R.

2007-01-01

We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estuary. Each source has distinct water-quality characteristics, and the contribution of each source varies in response to natural hydrologic variability and water diversions. We use simulations with a tidal hydrodynamic model to reveal how three diversion events, as case studies, influence water quality through their alteration of Delta-wide water circulation patterns and flushing time. Reduction of export pumping decreases the proportion of Sacramento- to San Joaquin-derived fresh water in the central Delta, leading to rapid increases in salinity. Delta Cross Channel gate operations control salinity in the western Delta and alter the freshwater source distribution in the central Delta. Removal of the head of Old River barrier, in autumn, increases the flushing time of the Stockton Ship Channel from days to weeks, contributing to a depletion of dissolved oxygen. Each shift in water quality has implications either for habitat quality or municipal drinking water, illustrating the importance of a systems view to anticipate the suite of changes induced by flow manipulations, and to minimize the conflicts inherent in allocations of scarce resources to meet multiple objectives.

Significance of water quality to fish propagation, waterfowl habitat, livestock watering, and recreation use for 24 lakes and reservoirs in Valley and Phillips Counties, Montana

USGS Publications Warehouse

Ferreira, R.F.

1983-01-01

Twenty-four reservoirs were sampled for water quality to determine their suitability for fish propagation, waterfowl habitat, livestock watering, and recreation. Reservoir-surface areas ranged from 0.2 to 146 hectares and depths ranged from 0.01 to 6.0 meters. Of the reservoirs studied, six generally had water quality that would not be detrimental to fish propagation. Most of the reservoirs were enriched with nutrients and supported large concentrations of phytoplankton and dense growth of aquatic plants. In late winter and late summer, enrichment of shallow reservoirs often resulted in dissolved-oxygen concentrations less than 5.0 milligrams per liter, which is detrimental to fish. Three reservoirs lacked aquatic plants for water fowl habitat. Four reservoirs had small dissolved-oxygen concentration in the bottom water that might be critical to the protection of waterfowl if botulism were to occur. Specific conductance of water samples from three reservoirs was sufficiently close to the criterion of 4,800 microsiemens per centimeter at 25 degrees celsius to be regarded as potentially hazardous to livestock. However, most of the reservoirs generally would not be conducive to recreational swimming. Visibility was limited in most of the reservoirs. In addition, leech populations and growth of submersed aquatic plants in most of the reservoirs would be a nuisance to swimmers. (USGS)

Assessing the Effects of Water Rights Purchases on Dissolved Oxygen, Stream Temperatures, and Fish Habitat

NASA Astrophysics Data System (ADS)

Mouzon, N. R.; Null, S. E.

2014-12-01

Human impacts from land and water development have degraded water quality and altered the physical, chemical, and biological integrity of Nevada's Walker River. Reduced instream flows and increased nutrient concentrations affect native fish populations through warm daily stream temperatures and low nightly dissolved oxygen concentrations. Water rights purchases are being considered to maintain instream flows, improve water quality, and enhance habitat for native fish species, such as Lahontan cutthroat trout. This study uses the River Modeling System (RMSv4), an hourly, physically-based hydrodynamic and water quality model, to estimate streamflows, temperatures, and dissolved oxygen concentrations in the Walker River. We simulate thermal and dissolved oxygen changes from increased streamflow to prioritize the time periods and locations that water purchases most enhance native trout habitat. Stream temperatures and dissolved oxygen concentrations are proxies for trout habitat. Monitoring results indicate stream temperature and dissolved oxygen limitations generally exist in the 115 kilometers upstream of Walker Lake (about 37% of the study area) from approximately May through September, and this reach currently acts as a water quality barrier for fish passage.

Maggie Creek Water Quality Data

EPA Pesticide Factsheets

These data are standard water quality parameters collected for surface water condition analysis (for example pH, conductivity, DO, TSS).This dataset is associated with the following publication:Kozlowski, D., R. Hall , S. Swanson, and D. Heggem. Linking Management and Riparian Physical Functions to Water Quality and Aquatic Habitat. JOURNAL OF WATER RESOURCES PLANNING AND MANAGEMENT. American Society of Civil Engineers (ASCE), Reston, VA, USA, 8(8): 797-815, (2016).

Indicators: Shallow Water Habitat/In-stream Fish Habitat

EPA Pesticide Factsheets

Shallow water habitat, also referred to as in-stream fish habitat, refers to areas that fish and other aquatic organisms need for concealment, breeding and feeding. This includes large woody snags, boulders, rock ledges, and undercut banks.

Water-quality assessment of the Ozark Plateaus study unit, Arkansas, Kansas, Missouri, and Oklahoma- habitat data and characteristics at selected sites, 1993-95

USGS Publications Warehouse

Femmer, Suzanne R.

1997-01-01

The characterization of instream and riparian habitat is part of the multiple lines of evidence used by the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program to assess the water quality of streams. In the NAWQA Program, integrated physical, chemical, and biological assessments are used to describe water-quality conditions. The instream and riparian habitat data are collected at sites selected for surface-water chemistry analyses and biological assessment. Instream and riparian habitat data are structured in a nested scheme?at sampling reach, segment, and basin scales. The habitat data were collected in the Ozark Plateaus study unit at 41 sites during 1993-95. Thirteen of these sites, representative of selected combinations of physiography, land use, and basin size, have longitudinal, transverse, and quarter point vegetation plot surveys in addition to the Level I survey measurements (reach length, depth, velocity, dominant substrate, embeddedness, and vegetation quarter points, for example) recommended by the NAWQA Program protocols. These habitat data were from onsite measurements, U.S. Geological Survey topographic maps, and a geographic information system. The analyses of the habitat data indicates substantial differences between sites of differing physiography and basin-scale land-use activities. The basins range from 46.4 to 4,318 square kilometers and have stream orders from 2 to 6. All streams studied are a riffle/pool type, and most have cobble that is less than 50 percent embedded as the dominant streambed substrate. Of the three physiographic sections studied, the Boston Mountains have the largest mean segment and sideslope gradients, basin relief, woody species diversity, and stream depths when compared with sites of similar size. Channel sinuosities, mean velocities, and canopy angles are largest at sites in the Springfield Plateau physiographic section. The sites in the Salem Plateau physiographic section have the largest woody

Assessment of Fish Habitat, Water Quality, and Selected Contaminants in Streambed Sediments in Noyes Slough, Fairbanks, Alaska, 2001-2002

USGS Publications Warehouse

Kennedy, Ben W.; Whitman, Matthew S.; Burrows, Robert L.; Richmond, Sharon A.

2004-01-01

During 2001-2002, the U.S. Geological Survey sampled streambed sediment at 23 sites, measured water quality at 26 sites, and assessed fish habitat for the entire length of Noyes Slough, a 5.5-mile slough of the Chena River in Fairbanks, Alaska. These studies were undertaken to document the environmental condition of the slough and to provide information to the public for consideration in plans to improve environmental conditions of the waterway. The availability of physical habitat for fish in the slough does not appear to be limited, although some beaver dams and shallow water may restrict movement, particularly during low flow. Elevated water temperatures in summer and low dissolved-oxygen concentrations are the principle factors adversely affecting water quality in Noyes Slough. Increased flow mitigated poor water-quality conditions and reduced the number of possible fish barriers. Flow appears to be the most prominent mechanism shaping water quality and fish habitat in Noyes Slough. Streambed sediment samples collected at 23 sites in 2001 were analyzed for 24 trace elements. Arsenic, lead, and zinc were the only trace elements detected in concentrations that exceed probable effect levels for the protection of aquatic life. The background concentration for arsenic in Noyes Slough is naturally elevated because of significant concentrations of arsenic in local bedrock and ground water. Sources of the zinc and lead contamination are uncertain, however both lead and zinc are common urban contaminants. Streambed-sediment samples from 12 sites in 2002 were analyzed for organochlorine pesticides, polychlorinated biphenyls (PCBs), and semivolatile organic compounds (SVOCs). The concentration of bis(2-ethylhexyl)phthalate of 2,600 micrograms per kilogram (?g/kg) for one sample from the site above Aurora Drive approached the aquatic-life criterion of 2,650 ?g/kg. Low concentrations of p-cresol, chrysene, and fluoranthene were detected in most of the sediment samples. The

Shallow-water habitats as sources of fallback foods for hominins.

PubMed

Wrangham, Richard; Cheney, Dorothy; Seyfarth, Robert; Sarmiento, Esteban

2009-12-01

Underground storage organs (USOs) have been proposed as critical fallback foods for early hominins in savanna, but there has been little discussion as to which habitats would have been important sources of USOs. USOs consumed by hominins could have included both underwater and underground storage organs, i.e., from both aquatic and terrestrial habitats. Shallow aquatic habitats tend to offer high plant growth rates, high USO densities, and relatively continuous USO availability throughout the year. Baboons in the Okavango delta use aquatic USOs as a fallback food, and aquatic or semiaquatic USOs support high-density human populations in various parts of the world. As expected given fossilization requisites, the African early- to mid-Pleistocene shows an association of Homo and Paranthropus fossils with shallow-water and flooded habitats where high densities of plant-bearing USOs are likely to have occurred. Given that early hominins in the tropics lived in relatively dry habitats, while others occupied temperate latitudes, ripe, fleshy fruits of the type preferred by African apes would not normally have been available year round. We therefore suggest that water-associated USOs were likely to have been key fallback foods, and that dry-season access to aquatic habitats would have been an important predictor of hominin home range quality. This study differs from traditional savanna chimpanzee models of hominin origins by proposing that access to aquatic habitats was a necessary condition for adaptation to savanna habitats. It also raises the possibility that harvesting efficiency in shallow water promoted adaptations for habitual bipedality in early hominins.

Review of factors affecting the distribution and abundance of waterfowl in shallow-water habitats of Chesapeake Bay

USGS Publications Warehouse

Perry, M.C.; Deller, A.S.

1996-01-01

Long-term trends of waterfowl populations in Chesapeake Bay demonstrate the importance of shallow-water habitats for waterfowl species. Although recent increases in field feeding by geese and swans lessened the importance of shallow-water areas for these species, most duck species depend almost exclusively on shallow-water habitats. Many factors influenced the distribution and abundance of waterfowl in shallow-water habitats. Habitat degradation resulted in the decline in numbers of most duck species and a change in distribution of some species. Increased numbers of mallards (Anas platyrhynchos) in recent decades probably resulted from release programs conducted by the Maryland Department of Natural Resources and private individuals. Studies of food habits since 1885 showed a decline in submerged-aquatic vegetation in the diet of some species, such as the canvasback (Aythya valisineria ), and an increase in the proportions of invertebrates in the diet. Diversity of food organisms for many waterfowl species has declined. Surveys of vegetation and invertebrates in the Chesapeake Bay generally reflect a degradation of shallow-water habitat. Human population increases in the Chesapeake Bay watershed directly and indirectly affected waterfowl distribution and abundance. The increase of exotic plant and invertebrate species in the bay, in most cases, benefited waterfowl populations. Increased contaminants have reduced the quality and quantity of habitat, although serious attempts to reverse this trend are underway. The use of shallow-water habitats by humans for fishing, hunting, boating, and other recreational and commercial uses reduced the use of shallow-water habitats by waterfowl. Humans can lessen the adverse influences on the valuable shallow-water habitats by restricting human population growth near these habitats and improving the water quality of the bay tributaries. Other affirmative actions that will improve these areas for waterfowl include greater

Size of age-0 crappies (Pomoxis spp.) relative to reservoir habitats and water levels

USGS Publications Warehouse

Kaczka, Levi J.; Miranda, Leandro E.

2014-01-01

Variable year-class strength is common in crappie Pomoxis spp. populations in many reservoirs, yet the mechanisms behind this variability are poorly understood. Size-dependent mortality of age-0 fishes has long been recognized in the population ecology literature; however, investigations about the effects of environmental factors on age-0 crappie size are lacking. The objective of this study was to determine if differences existed in total length of age-0 crappies between embayment and floodplain habitats in reservoirs, while accounting for potential confounding effects of water level and crappie species. To this end, we examined size of age-0 crappies in four flood-control reservoirs in northwest Mississippi over 4years. Age-0 crappies inhabiting uplake floodplain habitats grew to a larger size than fish in downlake embayments, but this trend depended on species, length of time a reservoir was dewatered in the months preceding spawning, and reservoir water level in the months following spawning. The results from our study indicate that water-level management may focus not only on allowing access to quality nursery habitat, but that alternating water levels on a multiyear schedule could increase the quality of degraded littoral habitats.

Habitat quality and geometry affect patch occupancy of two Orthopteran species.

PubMed

Pasinelli, Gilberto; Meichtry-Stier, Kim; Birrer, Simon; Baur, Bruno; Duss, Martin

2013-01-01

Impacts of habitat loss and fragmentation on distribution and population size of many taxa are well established. In contrast, less is known about the role of within-patch habitat quality for the spatial dynamics of species, even though within-patch habitat quality may substantially influence the dynamics of population networks. We studied occurrence patterns of two Orthopteran species in relation to size, isolation and quality of habitat patches in an intensively managed agricultural landscape (16.65 km(2)) in the Swiss lowland. Occurrence of field crickets (Gryllus campestris) was positively related to patch size and negatively to the distance to the nearest occupied patch, two measures of patch geometry. Moreover, field crickets were more likely to occur in extensively managed meadows, meadows used at low intensity and meadows dominated by Poa pratensis, three measures of patch quality. Occurrence of the large gold grasshopper (Chrysochraon dispar) was negatively related to two measures of patch geometry, distance to the nearest occupied patch and perimeter index (ratio of perimeter length to patch area). Further, large gold grasshoppers were more likely to occupy patches close to water and patches with vegetation left uncut over winter, two measures of patch quality. Finally, examination of patch occupancy dynamics of field crickets revealed that patches colonized in 2009 and patches occupied in both 2005 and 2009 were larger, better connected and of other quality than patches remaining unoccupied and patches from which the species disappeared. The strong relationships between Orthopteran occurrence and aspects of patch geometry found in this study support the "area-and-isolation paradigm". Additionally, our study reveals the importance of patch quality for occurrence patterns of both species, and for patch occupancy dynamics in the field cricket. An increased understanding of patch occupancy patterns may be gained if inference is based on variables related to

Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios

USGS Publications Warehouse

Matchett, Elliott L.; Fleskes, Joseph

2018-01-01

California's Central Valley provides critical, but threatened habitat and food resources for migrating and wintering waterfowl, shorebirds, and other waterbirds. The Central Valley is comprised of nine basins that were defined by the Central Valley Joint Venture (CVJV) to assist in conservation planning. Basins vary in composition and extent of habitats, which primarily include croplands and wetlands that rely on water supplies shared with other competing human and environmental uses. Changes in climate, urban development, and water supply management are uncertain and could reduce future availability of water supplies supporting waterbird habitats and limit effectiveness of wetland restoration planned by the CVJV to support wintering waterbirds. We modeled 17 plausible scenarios including combinations of three climate projections, three urbanization rates, and five water supply management options to promote agricultural and urban water uses, with and without wetland restoration. Our research examines the reduction in quantity and quality of habitats during the fall migration-wintering period by basin under each scenario, and the efficacy of planned wetland restoration to compensate reductions in flooded areas of wetland habitats. Scenario combinations of projected climate, urbanization, and water supply management options reduced availability of flooded cropland and wetland habitats during fall-winter and degraded the quality of seasonal wetlands (i.e., summer-irrigation for improved forage production), though the extent and frequency of impacts varied by basin. Planned wetland restoration may substantially compensate for scenario-related effects on wetland habitats in each basin. However, results indicate that Colusa, Butte, Sutter, San Joaquin, and Tulare Basins may require additional conservation to support summer-irrigation of seasonal wetlands and winter-flooding of cropland habitats. Still further conservation may be required to provide sufficient areas of

Biological, habitat, and water quality conditions in the upper Merced River drainage, Yosemite National Park, California, 1993-1996

USGS Publications Warehouse

Brown, Larry R.; Short, Terry M.

1999-01-01

The general conclusion from these studies is that water quality in the upper Merced River was very good from 1993-1996, despite high levels of human activities in some areas. Fish communities did not appear to be a useful indicator of habitat and water quality because of low species richness and the apparent importance of physical barriers in determining species distributions. Measurements of fish densities and size-distributions might be useful, but would be logistically difficult. Benthic algae and benthic invertebrates do appear to be useful in monitoring environmental conditions. Benthic algae may be more sensitive than benthic invertebrates to small environmental differences within years. Benthic algae were also more responsive than benthic invertebrates to differences in discharge between years. Thus, benthic invertebrates may be more useful in comparing environmental conditions between years, independent of discharge conditions.

Monitoring And Modeling Environmental Water Quality To Support Environmental Water Purchase Decision-making

NASA Astrophysics Data System (ADS)

Null, S. E.; Elmore, L.; Mouzon, N. R.; Wood, J. R.

2016-12-01

More than 25 million cubic meters (20,000 acre feet) of water has been purchased from willing agricultural sellers for environmental flows in Nevada's Walker River to improve riverine habitat and connectivity with downstream Walker Lake. Reduced instream flows limit native fish populations, like Lahontan cutthroat trout, through warm daily stream temperatures and low dissolved oxygen concentrations. Environmental water purchases maintain instream flows, although effects on water quality are more varied. We use multi-year water quality monitoring and physically-based hydrodynamic and water quality modeling to estimate streamflow, water temperature, and dissolved oxygen concentrations with alternative environmental water purchases. We simulate water temperature and dissolved oxygen changes from increased streamflow to prioritize the time periods and locations that environmental water purchases most enhance trout habitat as a function of water quality. Monitoring results indicate stream temperature and dissolved oxygen limitations generally exist in the 115 kilometers upstream of Walker Lake (about 37% of the study area) from approximately May through September, and this reach acts as a water quality barrier for fish passage. Model results indicate that low streamflows generally coincide with critically warm stream temperatures, water quality refugia exist on a tributary of the Walker River, and environmental water purchases may improve stream temperature and dissolved oxygen conditions for some reaches and seasons, especially in dry years and prolonged droughts. This research supports environmental water purchase decision-making and allows water purchase decisions to be prioritized with other river restoration alternatives.

WATER QUALITY EFFECTS OF HYPORHEIC PROCESSING IN A LARGE RIVER

EPA Science Inventory

Water quality changes along hyporheic flow paths may have
important effects on river water quality and aquatic habitat. Previous
studies on the Willamette River, Oregon, showed that river water follows
hyporheic flow paths through highly porous deposits created by river...

Evaulation of the Quality of an Aquatic Habitat on the Drietomica River

NASA Astrophysics Data System (ADS)

Stankoci, Ivan; Jariabková, Jana; Macura, Viliam

2014-03-01

The ecological status of a river is influenced by many factors, of which the most important are fauna and flora; in this paper they are defined as a habitat. During the years 2004, 2005, 2006 and 2011, research on the hydroecological quality of a habitat was evaluated in the reference section of the Drietomica River. Drietomica is a typical representative river of the Slovak flysch area and is located in the region of the White Carpathians in the northwestern part of Slovakia. In this article the results of modeling a microhabitat by means of the Instream Flow Incremental Methodology (IFIM) are presented. For the one-dimensional modeling, the River Habitat Simulation System (RHABSIM) was used to analyse the interaction between a water flow, the morphology of a riverbed, and the biological components of the environment. The habitat ´s hydroecological quality was evaluated after detailed ichthyological, topographical and hydro-morphological surveys. The main step was assessing the biotic characteristics of the habitat through the suitability curves for the Brown trout (Salmo trutta m. fario). Suitability curves are a graphic representation of the main biotic and abiotic preferences of a microhabitat's components. The suitability curves were derived for the depth, velocity, fish covers and degree of the shading. For evaluating the quality of the aquatic habitat, 19 fish covers were closely monitored and evaluated. The results of the Weighted Usable Area (WUA = f (Q)) were evaluated from a comprehensive assessment of the referenced reach of the Drietomica River.

Restored agricultural wetlands in Central Iowa: habitat quality and amphibian response

USGS Publications Warehouse

Reeves, Rebecca A.; Pierce, Clay; Smalling, Kelly L.; Klaver, Robert W.; Vandever, Mark W.; Battaglin, William A.; Muths, Erin L.

2016-01-01

Amphibians are declining throughout the United States and worldwide due, partly, to habitat loss. Conservation practices on the landscape restore wetlands to denitrify tile drainage effluent and restore ecosystem services. Understanding how water quality, hydroperiod, predation, and disease affect amphibians in restored wetlands is central to maintaining healthy amphibian populations in the region. We examined the quality of amphibian habitat in restored wetlands relative to reference wetlands by comparing species richness, developmental stress, and adult leopard frog (Lithobates pipiens) survival probabilities to a suite of environmental metrics. Although measured habitat variables differed between restored and reference wetlands, differences appeared to have sub-lethal rather than lethal effects on resident amphibian populations. There were few differences in amphibian species richness and no difference in estimated survival probabilities between wetland types. Restored wetlands had more nitrate and alkaline pH, longer hydroperiods, and were deeper, whereas reference wetlands had more amphibian chytrid fungus zoospores in water samples and resident amphibians exhibited increased developmental stress. Restored and reference wetlands are both important components of the landscape in central Iowa and maintaining a complex of fish-free wetlands with a variety of hydroperiods will likely contribute to the persistence of amphibians in this landscape.

Dispersal Limitations on Fish Community Recovery Following Long-term Water Quality Remediation

DOE PAGES

McManamay, Ryan A.; Jett, Robert T.; Ryon, Michael G.; ...

2016-02-22

Holistic restoration approaches, such as water quality remediation, are likely to meet conservation objectives because they are typically implemented at watershed scales, as opposed to individual stream reaches. However, habitat fragmentation may impose constraints on the ecological effectiveness of holistic restoration strategies by limiting colonization following remediation. We questioned the importance of dispersal limitations to fish community recovery following long-term water quality remediation and species reintroductions across the White Oak Creek (WOC) watershed near Oak Ridge, Tennessee (USA). Long-term (26 years) responses in fish species richness and biomass to water quality remediation were evaluated in light of habitat fragmentation andmore » population isolation from instream barriers, which varied in their passage potential. In addition, ordination techniques were used to determine the relative importance of habitat connectivity and water quality, in explaining variation fish communities relative to environmental fluctuations, i.e. streamflow. Ecological recovery (changes in richness) at each site was negatively related to barrier index, a measure of community isolation by barriers relative to stream distance. Following species reintroductions, dispersal by fish species was consistently in the downstream direction and upstream passage above barriers was non-existent. The importance of barrier index in explaining variation in fish communities was stronger during higher flow conditions, but decreased over time an indication of increasing community stability and loss of seasonal migrants. Compared to habitat fragmentation, existing water quality concerns (i.e., outfalls, point source discharges) were unrelated to ecological recovery, but explained relatively high variation in community dynamics. Our results suggest that habitat fragmentation limited the ecological effectiveness of intensive water quality remediation efforts and fish reintroduction

Dispersal Limitations on Fish Community Recovery Following Long-term Water Quality Remediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

McManamay, Ryan A.; Jett, Robert T.; Ryon, Michael G.

Holistic restoration approaches, such as water quality remediation, are likely to meet conservation objectives because they are typically implemented at watershed scales, as opposed to individual stream reaches. However, habitat fragmentation may impose constraints on the ecological effectiveness of holistic restoration strategies by limiting colonization following remediation. We questioned the importance of dispersal limitations to fish community recovery following long-term water quality remediation and species reintroductions across the White Oak Creek (WOC) watershed near Oak Ridge, Tennessee (USA). Long-term (26 years) responses in fish species richness and biomass to water quality remediation were evaluated in light of habitat fragmentation andmore » population isolation from instream barriers, which varied in their passage potential. In addition, ordination techniques were used to determine the relative importance of habitat connectivity and water quality, in explaining variation fish communities relative to environmental fluctuations, i.e. streamflow. Ecological recovery (changes in richness) at each site was negatively related to barrier index, a measure of community isolation by barriers relative to stream distance. Following species reintroductions, dispersal by fish species was consistently in the downstream direction and upstream passage above barriers was non-existent. The importance of barrier index in explaining variation in fish communities was stronger during higher flow conditions, but decreased over time an indication of increasing community stability and loss of seasonal migrants. Compared to habitat fragmentation, existing water quality concerns (i.e., outfalls, point source discharges) were unrelated to ecological recovery, but explained relatively high variation in community dynamics. Our results suggest that habitat fragmentation limited the ecological effectiveness of intensive water quality remediation efforts and fish reintroduction

Water Quality, Physical Habitat, and Biology of the Kijik River Basin, Lake Clark National Park and Preserve, Alaska, 2004-2005

USGS Publications Warehouse

Brabets, Timothy P.; Ourso, Robert T.

2006-01-01

The U.S. Geological Survey and the National Park Service conducted a water-quality investigation of the Kijik River Basin in Lake Clark National Park and Preserve from June 2004 to March 2005. The Kijik River Basin was studied because it has a productive sockeye salmon run that is important to the larger Kvichak River watershed. Water-quality, physical habitat, and biological characteristics were assessed. Water type throughout the Kijik River Basin is calcium bicarbonate although Little Kijik River above Kijik Lake does have slightly higher concentrations of sulfate and chloride. Alkalinity concentrations are generally less than 28 milligrams per liter, indicating a low buffering capacity of these waters. Lachbuna Lake traps much of the suspended sediment from the glacier streams in the headwaters of the basin as evidenced by low secchi-disc transparency of 1 to 2 meters and low suspended sediment concentrations in the Kijik River downstream from the lake. Kijik Lake is a fed by clearwater streams and has secchi-disc readings ranging from 11 to 15 meters. Streambed sediments collected from four surface sites analyzed for trace elements indicated that arsenic concentrations at all sites were above proposed guidelines. However, arsenic concentrations are due to the local geology, not anthropogenic factors. Benthic macroinvertebrate qualitative multi-habitat samples collected from two sites on the Little Kijik River and two sites on the main stem of the Kijik River indicated a total of 69 taxa present among the four sites. The class Insecta, made up the largest percentage of macroinvertebrates, totaling 70 percent of the families found. The insects were comprised of four orders; Diptera (flies and midges), Ephemeroptera (mayflies), Plecoptera (stoneflies), and Trichoptera (caddisflies). One-hundred twenty-two species of periphytic algae were identified in qualitative multi-habitat samples collected at the four stream sites. Eight species of non-motile, diatoms were

Habitat quality influences population distribution, individual space use and functional responses in habitat selection by a large herbivore.

PubMed

Bjørneraas, Kari; Herfindal, Ivar; Solberg, Erling Johan; Sæther, Bernt-Erik; van Moorter, Bram; Rolandsen, Christer Moe

2012-01-01

Identifying factors shaping variation in resource selection is central for our understanding of the behaviour and distribution of animals. We examined summer habitat selection and space use by 108 Global Positioning System (GPS)-collared moose in Norway in relation to sex, reproductive status, habitat quality, and availability. Moose selected habitat types based on a combination of forage quality and availability of suitable habitat types. Selection of protective cover was strongest for reproducing females, likely reflecting the need to protect young. Males showed strong selection for habitat types with high quality forage, possibly due to higher energy requirements. Selection for preferred habitat types providing food and cover was a positive function of their availability within home ranges (i.e. not proportional use) indicating functional response in habitat selection. This relationship was not found for unproductive habitat types. Moreover, home ranges with high cover of unproductive habitat types were larger, and smaller home ranges contained higher proportions of the most preferred habitat type. The distribution of moose within the study area was partly related to the distribution of different habitat types. Our study shows how distribution and availability of habitat types providing cover and high-quality food shape ungulate habitat selection and space use.

Linkages between forest soils and water quality and quantity

Treesearch

Daniel G. Neary; George G. Ice; C. Rhett Jackson

2009-01-01

The most sustainable and best quality fresh water sources in the world originate in forest ecosystems. The biological, chemical, and physical characteristics of forest soils are particularly well suited to delivering high quality water to streams, moderating stream hydrology, and providing diverse aquatic habitat. Forest soils feature litter layers and...

Temporal and spatial assessment of water quality, physical habitat, and benthic communities in an impaired agricultural stream in California's San Joaquin Valley.

PubMed

Hall, Lenwood W; Killen, William D

2005-01-01

The goal of this study was to characterize and discuss the relationships among water quality, physical habitat, and benthic community data collected annually over a three-year period (2000--2002) in an impaired agricultural stream (Orestimba Creek) in California's San Joaquin River watershed. Conductivity, pH, and turbidity were the most important water quality conditions influencing the various benthic metrics. Significantly higher flow conditions and lower dissolved oxygen values were reported in Orestimba Creek in 2001; increased turbidity conditions were reported in 2002. Channel alteration, riparian buffer, sediment deposition, and channel flow were the most important physical habitat metrics influencing the various benthic metrics. Higher total physical habitat scores were reported in 2001 when compared with 2002. The most dominant benthic taxa collected during all three years of sampling were oligochaetes and chironomids. Oligochaetes are found in stressful environments while chironomids can be either sensitive or tolerant to environmental stressors depending on the species. Populations of both daphnids and the exotic clam Corbicula were reported to increase over time. Both of these taxa are generally tolerant to most types of environmental degradation. The exception is that daphnids are highly sensitive to organophosphate insecticides. The % filterers increased over time, which suggests an increase in environmental disturbance. The % collectors decreased from 2000 to 2002, which suggests an improvement in environmental conditions. The presence of approximately 100 taxa in Orestimba Creek during each of the three years of sampling implies that benthic communities in this stream are fairly diverse, considering their ephemeral environment, but without a clear definition of benthic community expectations based on established referenc conditions it is unknown if this water body is actually impaired.

Physical habitat, water quality, and riverine biological assemblages of selected reaches of the Sheyenne River, North Dakota, 2010

USGS Publications Warehouse

Lundgren, Robert F.; Rowland, Kathleen M.; Lindsay, Matthew J.

2012-01-01

In 2010, data on physical habitat, water quality, and riverine biological assemblages were collected at selected reaches in four locations (Kleven, Sheyenne, Cooperstown, and West Fargo) on the Sheyenne River in east-central North Dakota. Three of the locations (Kleven, Sheyenne, and Cooperstown) are above Baldhill Dam and one location (West Fargo) is below Baldhill Dam on the Sheyenne River. The 2010 data provide information to establish a better understanding of the water-quality and ecological conditions of the Sheyenne River. Concerns were raised about the water-quality and ecological conditions of the Sheyenne River because of the interbasin transfer of water from nearby Devils Lake. The transfer of water from Devils Lake to the Sheyenne River occurs through the Devils Lake State Outlet near Peterson Coulee or, if lake elevations exceed 1,459 feet above National Geodetic Vertical Datum of 1929 (NGVD 29), through a natural outlet, Tolna Coulee. The field measurements of water-quality characteristics and results of chemical analyses generally are comparable to summary statistics calculated for Sheyenne River for 1980 through 2006. Overall, water-quality results show differences between the Kleven, Sheyenne, Cooperstown, and West Fargo reaches. Sulfate concentrations were less than the State of North Dakota criterion of 750 milligrams per liter for the upper Sheyenne River above Baldhill Dam and less than the criterion of 450 milligrams per liter for the lower Sheyenne River below Baldhill Dam. Arsenic concentrations at most reaches exceeded the U.S. Environmental Protection Agency drinking-water standard of 10 micrograms per liter. Nutrient concentrations (nitrogen, phosphorus) were higher in the upper Sheyenne River above Baldhill Dam than below Baldhill Dam where concentrations decreased by about half. In 2010, 35 families and 44 genera of benthic macroinvertebrates were collected and identified. On the basis of the index of biotic intergrity scores for

Habitat-specific foraging of prothonotary warblers: Deducing habitat quality

USGS Publications Warehouse

Lyons, J.E.

2005-01-01

Foraging behavior often reflects food availability in predictable ways. For example, in habitats where food availability is high, predators should attack prey more often and move more slowly than in habitats where food availability is low. To assess relative food availability and habitat quality, I studied the foraging behavior of breeding Prothonotary Warblers (Protonotaria citrea) in two forest habitat types, cypress-gum swamp forest and coastal-plain levee forest. I quantified foraging behavior with focal animal sampling and continuous recording during foraging bouts. I measured two aspects of foraging behavior: 1) prey attack rate (attacks per minute), using four attack maneuvers (glean, sally, hover, strike), and 2) foraging speed (movements per minute), using three types of movement (hop, short flight [???1 m], long flight [>1 m]). Warblers attacked prey more often in cypress-gum swamp forest than in coastal-plain levee forest. Foraging speed, however, was not different between habitats. I also measured foraging effort (% time spent foraging) and relative frequency of attack maneuvers employed in each habitat; neither of these variables was influenced by forest type. I conclude that Prothonotary Warblers encounter more prey when foraging in cypress-gum swamps than in coastal-plain levee forest, and that greater food availability results in higher density and greater reproductive success for birds breeding in cypress-gum swamp.

Effects of ice formation on hydrology and water quality in the lower Bradley River, Alaska; implications for salmon incubation habitat

USGS Publications Warehouse

Rickman, Ronald L.

1998-01-01

A minimum flow of 40 cubic feet per second is required in the lower Bradley River, near Homer, Alaska, from November 2 to April 30 to ensure adequate habitat for salmon incubation. The study that determined this minimum flow did not account for the effects of ice formation on habitat. The limiting factor for determining the minimal acceptable flow limit appears to be stream-water velocity. The minimum short-term flow needed to ensure adequate salmon incubation habitat when ice is present is about 30 cubic feet per second. For long-term flows, 40 cubic feet per second is adequate when ice is present. Long-term minimum discharge needed to ensure adequate incubation habitat--which is based on mean velocity alone--is as follows: 40 cubic feet per second when ice is forming; 35 cubic feet per second for stable and eroding ice conditions; and 30 cubic feet per second for ice-free conditions. The effects of long-term streamflow less than 40 cubic feet per second on fine-sediment deposition and dissolved-oxygen interchange could not be extrapolated from the data. Hydrologic properties and water-quality data were measured in winter only from March 1993 to April 1998 at six transects in the lower Bradley River under three phases of icing: forming, stable, and eroding. Discharge in the lower Bradley River ranged from 33.3 to 73.0 cubic feet per second during all phases of ice formation and ice conditions, which ranged from ice free to 100 percent ice cover. Hydrostatic head was adequate for habitat protection for all ice phases and discharges. Mean stream velocity was adequate for all but one ice-forming episode. Velocity distribution within each transect varied significantly from one sampling period to the next. No relation was found between ice phase, discharge, and wetted perimeter. Intragravel-water temperature was slightly warmer than surface-water temperature. Surface- and intragravel-water dissolved-oxygen levels were adequate for all ice phases and discharges. No

Desert amphibian selection of arid land breeding habitat undermines reproductive effort.

PubMed

Kiesow, Anja B; Griffis-Kyle, Kerry L

2017-12-01

Understanding how animals select habitat is important for understanding how to better conserve those species. As droughts become more frequent and water availability declines in many systems, understanding selection of water sources becomes even more important for conservation. Tinajas and anthropogenic catchments are critical ephemeral breeding sites for Sonoran Desert anurans. Tadpoles have been documented in both water types even though anthropogenic catchments can contain very high concentrations of ammonia. We currently do not know how amphibians are selecting breeding habitat. We tested three hypotheses of habitat selection based on resource quality, resource quality and territoriality, and proximity of water site to other water sites. Male Anaxyrus punctatus called from all sites regardless of habitat quality or male quality; however, they were found more often at sites within 2 km of other sites. This suggests that male desert anurans are selecting close breeding habitat regardless of quality for breeding, indicating ammoniated sites are likely either population sinks or ecological traps. Consequently, adding anthropogenic water sites, without managing to reduce ammonia, will provide low quality habitat that could cause long-term declines in desert anuran populations.

Water-quality, biological, and physical-habitat conditions at fixed sites in the Cook Inlet Basin, Alaska, National Water-Quality Assessment Study Unit, October 1998-September 2001

USGS Publications Warehouse

Brabets, Timothy P.; Whitman, Matthew S.

2004-01-01

The Cook Inlet Basin study unit of the U.S. Geological Survey National Water-Quality Assessment Program comprises 39,325 square miles in south-central Alaska. Data were collected at eight fixed sites to provide baseline information in areas where no development has taken place, urbanization or logging have occurred, or the effects of recreation are increasing. Collection of water-quality, biology, and physical-habitat data began in October 1998 and ended in September 2001 (water years 1999-2001). The climate for the water years in the study may be categorized as slightly cool-wet (1999), slightly warm-wet (2000), and significantly warm-dry (2001). Total precipitation was near normal during the study period, and air temperatures ranged from modestly cool in water year 1999 to near normal in 2000, and to notably warm in 2001. Snowmelt runoff dominates the hydrology of streams in the Cook Inlet Basin. Average annual flows at the fixed sites were approximately the same as the long-term average annual flows, with the exception of those in glacier-fed basins, which had above-average flow in water year 2001. Water temperature of all streams studied in the Cook Inlet Basin remained at 0 oC for about 6 months per year, and average annual water temperatures ranged from 3.3 to 6.2 degrees Celsius. Of the water-quality constituents sampled, all concentrations were less than drinking-water standards and only one constituent, the pesticide carbaryl, exceeded aquatic-life standards. Most of the stream waters of the Cook Inlet Basin were classified as calcium bicarbonate, which reflects the underlying geology. Streams in the Cook Inlet Basin draining areas with glaciers, rough mountainous terrain, and poorly developed soils have low concentrations of nitrogen, phosphorus, and dissolved organic carbon compared with concentrations of these same constituents in streams in lowland or urbanized areas. In streams draining relatively low-lying areas, most of the suspended sediment

Methods for collecting algal samples as part of the National Water-Quality Assessment Program

USGS Publications Warehouse

Porter, Stephen D.; Cuffney, Thomas F.; Gurtz, Martin E.; Meador, Michael R.

1993-01-01

Benthic algae (periphyton) and phytoplankton communities are characterized in the U.S. Geological Survey's National Water-Quality Assessment Program as part of an integrated physical, chemical, and biological assessment of the Nation's water quality. This multidisciplinary approach provides multiple lines of evidence for evaluating water-quality status and trends, and for refining an understanding of the factors that affect water-quality conditions locally, regionally, and nationally. Water quality can be characterized by evaluating the results of qualitative and quantitative measurements of the algal community. Qualitative periphyton samples are collected to develop of list of taxa present in the sampling reach. Quantitative periphyton samples are collected to measure algal community structure within selected habitats. These samples of benthic algal communities are collected from natural substrates, using the sampling methods that are most appropriate for the habitat conditions. Phytoplankton samples may be collected in large nonwadeable streams and rivers to meet specific program objectives. Estimates of algal biomass (chlorophyll content and ash-free dry mass) also are optional measures that may be useful for interpreting water-quality conditions. A nationally consistent approach provides guidance on site, reach, and habitat selection, as well as information on methods and equipment for qualitative and quantitative sampling. Appropriate quality-assurance and quality-control guidelines are used to maximize the ability to analyze data locally, regionally, and nationally.

Physical habitat simulation system reference manual: version II

USGS Publications Warehouse

Milhous, Robert T.; Updike, Marlys A.; Schneider, Diane M.

1989-01-01

There are four major components of a stream system that determine the productivity of the fishery (Karr and Dudley 1978). These are: (1) flow regime, (2) physical habitat structure (channel form, substrate distribution, and riparian vegetation), (3) water quality (including temperature), and (4) energy inputs from the watershed (sediments, nutrients, and organic matter). The complex interaction of these components determines the primary production, secondary production, and fish population of the stream reach. The basic components and interactions needed to simulate fish populations as a function of management alternatives are illustrated in Figure I.1. The assessment process utilizes a hierarchical and modular approach combined with computer simulation techniques. The modular components represent the "building blocks" for the simulation. The quality of the physical habitat is a function of flow and, therefore, varies in quality and quantity over the range of the flow regime. The conceptual framework of the Incremental Methodology and guidelines for its application are described in "A Guide to Stream Habitat Analysis Using the Instream Flow Incremental Methodology" (Bovee 1982). Simulation of physical habitat is accomplished using the physical structure of the stream and streamflow. The modification of physical habitat by temperature and water quality is analyzed separately from physical habitat simulation. Temperature in a stream varies with the seasons, local meteorological conditions, stream network configuration, and the flow regime; thus, the temperature influences on habitat must be analysed on a stream system basis. Water quality under natural conditions is strongly influenced by climate and the geological materials, with the result that there is considerable natural variation in water quality. When we add the activities of man, the possible range of water quality possibilities becomes rather large. Consequently, water quality must also be analysed on a

MODELING PHYSICAL HABITAT PARAMETERS

EPA Science Inventory

Salmonid populations can be affected by alterations in stream physical habitat. Fish productivity is determined by the stream's physical habitat structure ( channel form, substrate distribution, riparian vegetation), water quality, flow regime and inputs from the watershed (sedim...

Models of regional habitat quality and connectivity for pumas (Puma concolor) in the southwestern United States.

PubMed

Dickson, Brett G; Roemer, Gary W; McRae, Brad H; Rundall, Jill M

2013-01-01

The impact of landscape changes on the quality and connectivity of habitats for multiple wildlife species is of global conservation concern. In the southwestern United States, pumas (Puma concolor) are a well distributed and wide-ranging large carnivore that are sensitive to loss of habitat and to the disruption of pathways that connect their populations. We used an expert-based approach to define and derive variables hypothesized to influence the quality, location, and permeability of habitat for pumas within an area encompassing the entire states of Arizona and New Mexico. Survey results indicated that the presence of woodland and forest cover types, rugged terrain, and canyon bottom and ridgeline topography were expected to be important predictors of both high quality habitat and heightened permeability. As road density, distance to water, or human population density increased, the quality and permeability of habitats were predicted to decline. Using these results, we identified 67 high quality patches across the study area, and applied concepts from electronic circuit theory to estimate regional patterns of connectivity among these patches. Maps of current flow among individual pairs of patches highlighted possible pinch points along two major interstate highways. Current flow summed across all pairs of patches highlighted areas important for keeping the entire network connected, regardless of patch size. Cumulative current flow was highest in Arizona north of the Colorado River and around Grand Canyon National Park, and in the Sky Islands region owing to the many small habitat patches present. Our outputs present a first approximation of habitat quality and connectivity for dispersing pumas in the southwestern United States. Map results can be used to help target finer-scaled analyses in support of planning efforts concerned with the maintenance of puma metapopulation structure, as well as the protection of landscape features that facilitate the dispersal

Models of Regional Habitat Quality and Connectivity for Pumas (Puma concolor) in the Southwestern United States

PubMed Central

Dickson, Brett G.; Roemer, Gary W.; McRae, Brad H.; Rundall, Jill M.

2013-01-01

The impact of landscape changes on the quality and connectivity of habitats for multiple wildlife species is of global conservation concern. In the southwestern United States, pumas (Puma concolor) are a well distributed and wide-ranging large carnivore that are sensitive to loss of habitat and to the disruption of pathways that connect their populations. We used an expert-based approach to define and derive variables hypothesized to influence the quality, location, and permeability of habitat for pumas within an area encompassing the entire states of Arizona and New Mexico. Survey results indicated that the presence of woodland and forest cover types, rugged terrain, and canyon bottom and ridgeline topography were expected to be important predictors of both high quality habitat and heightened permeability. As road density, distance to water, or human population density increased, the quality and permeability of habitats were predicted to decline. Using these results, we identified 67 high quality patches across the study area, and applied concepts from electronic circuit theory to estimate regional patterns of connectivity among these patches. Maps of current flow among individual pairs of patches highlighted possible pinch points along two major interstate highways. Current flow summed across all pairs of patches highlighted areas important for keeping the entire network connected, regardless of patch size. Cumulative current flow was highest in Arizona north of the Colorado River and around Grand Canyon National Park, and in the Sky Islands region owing to the many small habitat patches present. Our outputs present a first approximation of habitat quality and connectivity for dispersing pumas in the southwestern United States. Map results can be used to help target finer-scaled analyses in support of planning efforts concerned with the maintenance of puma metapopulation structure, as well as the protection of landscape features that facilitate the dispersal

Methods for collecting benthic invertebrate samples as part of the National Water-Quality Assessment Program

USGS Publications Warehouse

Cuffney, Thomas F.; Gurtz, Martin E.; Meador, Michael R.

1993-01-01

Benthic invertebrate communities are evaluated as part of the ecological survey component of the U.S. Geological Survey's National Water-Quality Assessment Program. These biological data are collected along with physical and chemical data to assess water-quality conditions and to develop an understanding of the factors that affect water-quality conditions locally, regionally, and nationally. The objectives of benthic invertebrate community characterizations are to (1) develop for each site a list of tax a within the associated stream reach and (2) determine the structure of benthic invertebrate communities within selected habitats of that reach. A nationally consistent approach is used to achieve these objectives. This approach provides guidance on site, reach, and habitat selection and methods and equipment for qualitative multihabitat sampling and semi-quantitative single habitat sampling. Appropriate quality-assurance and quality-control guidelines are used to maximize the ability to analyze data within and among study units.

EVALUATION OF STREAMBANK RESTORATION ON IN-STREAM WATER QUALITY IN AN URBAN WATERSHED

EPA Science Inventory

The objectives of this on-going project are to: investigate the effectiveness of streambank restoration techniques on increasing available biological habitat and improving in-stream water quality in an impaired stream; and, demonstrate the utility of continuous water-quality moni...

Serengeti real estate: density vs. fitness-based indicators of lion habitat quality.

PubMed

Mosser, Anna; Fryxell, John M; Eberly, Lynn; Packer, Craig

2009-10-01

Habitat quality is typically inferred by assuming a direct relationship between consumer density and resource abundance, although it has been suggested that consumer fitness may be a more accurate measure of habitat quality. We examined density vs. fitness-based measures of habitat quality for lions in the Serengeti National Park, Tanzania. A 40-year average of female reproductive success (yearling cubs per female) was best explained by proximity to river confluences, whereas patterns of productivity (yearling cubs per km(2)) and adult female density (individuals per km(2)) were associated with more general measures of habitat quality and areas of shelter in poor habitat. This suggests that density may not accurately distinguish between high-quality 'source' areas and low-quality sites that merely provide refuges for effectively non-reproductive individuals. Our results indicate that density may be a misleading indicator of real estate value, particularly for populations that do not conform to an ideal free distribution.

Urban Water and Riverine Quality: Participatory Science in Singapore

NASA Astrophysics Data System (ADS)

Higgitt, D. L.

2011-12-01

Singapore is a highly urbanised environment experiencing tropical monsoon hydrological regimes. A heavily engineered fluvial system has been developed over time to provide efficient drainage and reduce the area subject to flood risk. However, recent interest in ecosystem-based approaches to river management and the enhancement of the aesthetic and ecological 'quality' of riverine landscape, coupled with concerns about climate change, has challenged the prevailing engineering view. This is reflected in the Public Utility Board (PUB) ABC Waters Programme, which also seeks to develop community interest in riverine environments and engagement with water-related concerns. As part of a programme developing participatory GIS (PGIS) with school and university students, we have undertaken applications involving participant observation, reporting and analysis of water quality data and habitat quality based on a simplified version of the UK Environment Agency's River Habitat Survey. From an educational perspective, there is evidence that these PGIS initiatives raise environmental awareness and enhance geospatial thinking, particularly in relation to catchment management concepts. The extent to which participant-derived data can contribute to a citizen science of urban water quality and hence deliver some aspects of the community engagement sought after by the authorities, is a topic of debate.

Freshwater mussel population status and habitat quality in the Clinch River, Virginia and Tennessee, USA: a featured collection

USGS Publications Warehouse

Zipper, Carl E.; Beaty, Braven; Johnson, Gregory C.; Jones, Jess W.; Krstolic, Jennifer Lynn; Ostby, Brett J.K.; Wolfe, William J.; Donovan, Patricia

2014-01-01

The Clinch River of southwestern Virginia and northeastern Tennessee is arguably the most important river for freshwater mussel conservation in the United States. This featured collection presents investigations of mussel population status and habitat quality in the Clinch River. Analyses of historic water- and sediment-quality data suggest that water column ammonia and water column and sediment metals, including Cu and Zn, may have contributed historically to declining densities and extirpations of mussels in the river's Virginia sections. These studies also reveal increasing temporal trends for dissolved solids concentrations throughout much of the river's extent. Current mussel abundance patterns do not correspond spatially with physical habitat quality, but they do correspond with specific conductance, dissolved major ions, and water column metals, suggesting these and/or associated constituents as factors contributing to mussel declines. Mussels are sensitive to metals. Native mussels and hatchery-raised mussels held in cages in situ accumulated metals in their body tissues in river sections where mussels are declining. Organic compound and bed-sediment contaminant analyses did not reveal spatial correspondences with mussel status metrics, although potentially toxic levels were found. Collectively, these studies identify major ions and metals as water- and sediment-quality concerns for mussel conservation in the Clinch River.

Evolutionary bottlenecks in brackish water habitats drive the colonization of fresh water by stingrays.

PubMed

Kirchhoff, K N; Hauffe, T; Stelbrink, B; Albrecht, C; Wilke, T

2017-08-01

Species richness in freshwater bony fishes depends on two main processes: the transition into and the diversification within freshwater habitats. In contrast to bony fishes, only few cartilaginous fishes, mostly stingrays (Myliobatoidei), were able to colonize fresh water. Respective transition processes have been mainly assessed from a physiological and morphological perspective, indicating that the freshwater lifestyle is strongly limited by the ability to perform osmoregulatory adaptations. However, the transition history and the effect of physiological constraints on the diversification in stingrays remain poorly understood. Herein, we estimated the geographic pathways of freshwater colonization and inferred the mode of habitat transitions. Further, we assessed habitat-related speciation rates in a time-calibrated phylogenetic framework to understand factors driving the transition of stingrays into and the diversification within fresh water. Using South American and Southeast Asian freshwater taxa as model organisms, we found one independent freshwater colonization event by stingrays in South America and at least three in Southeast Asia. We revealed that vicariant processes most likely caused freshwater transition during the time of major marine incursions. The habitat transition rates indicate that brackish water species switch preferably back into marine than forth into freshwater habitats. Moreover, our results showed significantly lower diversification rates in brackish water lineages, whereas freshwater and marine lineages exhibit similar rates. Thus, brackish water habitats may have functioned as evolutionary bottlenecks for the colonization of fresh water by stingrays, probably because of the higher variability of environmental conditions in brackish water. © 2017 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2017 European Society For Evolutionary Biology.

Spatial, Temporal, and Density-Dependent Components of Habitat Quality for a Desert Owl

PubMed Central

Flesch, Aaron D.; Hutto, Richard L.; van Leeuwen, Willem J. D.; Hartfield, Kyle; Jacobs, Sky

2015-01-01

Spatial variation in resources is a fundamental driver of habitat quality but the realized value of resources at any point in space may depend on the effects of conspecifics and stochastic factors, such as weather, which vary through time. We evaluated the relative and combined effects of habitat resources, weather, and conspecifics on habitat quality for ferruginous pygmy-owls (Glaucidium brasilianum) in the Sonoran Desert of northwest Mexico by monitoring reproductive output and conspecific abundance over 10 years in and around 107 territory patches. Variation in reproductive output was much greater across space than time, and although habitat resources explained a much greater proportion of that variation (0.70) than weather (0.17) or conspecifics (0.13), evidence for interactions among each of these components of the environment was strong. Relative to habitat that was persistently low in quality, high-quality habitat buffered the negative effects of conspecifics and amplified the benefits of favorable weather, but did not buffer the disadvantages of harsh weather. Moreover, the positive effects of favorable weather at low conspecific densities were offset by intraspecific competition at high densities. Although realized habitat quality declined with increasing conspecific density suggesting interference mechanisms associated with an Ideal Free Distribution, broad spatial heterogeneity in habitat quality persisted. Factors linked to food resources had positive effects on reproductive output but only where nest cavities were sufficiently abundant to mitigate the negative effects of heterospecific enemies. Annual precipitation and brooding-season temperature had strong multiplicative effects on reproductive output, which declined at increasing rates as drought and temperature increased, reflecting conditions predicted to become more frequent with climate change. Because the collective environment influences habitat quality in complex ways, integrated approaches

Spatial, temporal, and density-dependent components of habitat quality for a desert owl.

PubMed

Flesch, Aaron D; Hutto, Richard L; van Leeuwen, Willem J D; Hartfield, Kyle; Jacobs, Sky

2015-01-01

Spatial variation in resources is a fundamental driver of habitat quality but the realized value of resources at any point in space may depend on the effects of conspecifics and stochastic factors, such as weather, which vary through time. We evaluated the relative and combined effects of habitat resources, weather, and conspecifics on habitat quality for ferruginous pygmy-owls (Glaucidium brasilianum) in the Sonoran Desert of northwest Mexico by monitoring reproductive output and conspecific abundance over 10 years in and around 107 territory patches. Variation in reproductive output was much greater across space than time, and although habitat resources explained a much greater proportion of that variation (0.70) than weather (0.17) or conspecifics (0.13), evidence for interactions among each of these components of the environment was strong. Relative to habitat that was persistently low in quality, high-quality habitat buffered the negative effects of conspecifics and amplified the benefits of favorable weather, but did not buffer the disadvantages of harsh weather. Moreover, the positive effects of favorable weather at low conspecific densities were offset by intraspecific competition at high densities. Although realized habitat quality declined with increasing conspecific density suggesting interference mechanisms associated with an Ideal Free Distribution, broad spatial heterogeneity in habitat quality persisted. Factors linked to food resources had positive effects on reproductive output but only where nest cavities were sufficiently abundant to mitigate the negative effects of heterospecific enemies. Annual precipitation and brooding-season temperature had strong multiplicative effects on reproductive output, which declined at increasing rates as drought and temperature increased, reflecting conditions predicted to become more frequent with climate change. Because the collective environment influences habitat quality in complex ways, integrated approaches

Application of CCME Water Quality Index to monitor water quality: a case study of the Mackenzie River Basin, Canada.

PubMed

Lumb, Ashok; Halliwell, Doug; Sharma, Tribeni

2006-02-01

All six ecosystem initiatives evolved from many years of federal, provincial, First Nation, local government and community attention to the stresses on sensitive habitats and species, air and water quality, and the consequent threats to community livability. This paper assesses water quality aspect for the ecosystem initiatives and employs newly developed Canadian Council of Ministers of the Environment Water Quality Index (CCME WQI) which provides a convenient mean of summarizing complex water quality data that can be easily understood by the public, water distributors, planners, managers and policy makers. The CCME WQI incorporates three elements: Scope - the number of water quality parameters (variables) not meeting water quality objectives (F(1)); Frequency - the number of times the objectives are not met (F(2)); and Amplitude. the extent to which the objectives are not met (F(3)). The index produces a number between 0 (worst) to 100 (best) to reflect the water quality. This study evaluates water quality of the Mackenzie - Great Bear sub-basin by employing two modes of objective functions (threshold values): one based on the CCME water quality guidelines and the other based on site-specific values that were determined by the statistical analysis of the historical data base. Results suggest that the water quality of the Mackenzie-Great Bear sub-basin is impacted by high turbidity and total (mostly particulate) trace metals due to high suspended sediment loads during the open water season. Comments are also provided on water quality and human health issues in the Mackenzie basin based on the findings and the usefulness of CCME water quality guidelines and site specific values.

[Water sources of Nitraria sibirica and response to precipitation in two desert habitats].

PubMed

Zhou, Hai; Zhao, Wen Zhi; He, Zhi Bin

2017-07-18

Nitraria sibirica usually exists in a form of nebkhas, and has strong ecological adaptability. The plant species has distinctive function for wind prevention and sand fixation, and resistance drought and salt. However, the water condition is still a limiting factor for the plant survival and development. In order to understand the water use strategy of the plant in different desert habitats, we selected the N. sibirica growing in sandy desert habitat and gravel desert habitat to study the seaso-nal variation of plant water sources and response to precipitation at the edge of the oasis of Linze in the Hexi Corridor. We measured the oxygen stable isotope of the plant stem water and the different potential water sources (precipitation, soil water and ground water), and used the IsoSource model to calculate the proportion of water sources from the potential water. The results showed that there were significant seasonal variation characteristics of δ 18 O value and water source of stem water for the plant in the two habitats. In the sandy habitat, the plant used more ground water in the less precipitation seasons including spring and fall, and more than 50% of the water sources absorbed from ground water. However, under the condition of gravel habitat, the plant could not achieve the ground water level depth of 11.5 m, and its water source was controlled by precipitation, which had large seasonal variability. The water sources of N. sibirica had significant responses to the change of precipitation in the two desert habitats. Following the rapid decrease of soil water content after the precipitation events, the plant in the sandy habitat turned to use the abundant ground water as the main sources of water, while the plant in the gravel habitat only used the less water from precipita-tion infiltration to the deep soil. Therefore, different water use strategies of the plant in the two habitats were the main reason for the difference in growth characteristics, and it had a

[Study on morphology, quality and germination characteristics of Acanthopanax trifoliatus seeds under different habitats].

PubMed

Xiao, Juan

2014-05-01

To preliminary explore the difference of the morphological, quality and germinal characteristics of Acanthopanax trifoliatus seeds under different habitats. Collect the wild seeds from different habitats in West Mountain, and then observe their external appearances and internal structure, and test the thousand seeds weight,water content and seed vigor. What's more, the influence to germination rates of the seeds from different temperatures and light intensities in artificial bioclimatic chamber was studied. Orthogonal test in experimental plots was carried out to screen the different sowing dates, matrix types and soil depths which may influence germination rate. The external appearances and quality characteristics of wild seeds from three habitats were different. Seeds could germinate in the both light and dark, the germination rate of the habitat II was as high as 70.5% at the optimum temperature 20 degrees C in artificial bioclimatic chamber. The optimal combination A1, B1, C1 was screened out through orthogonal test, namely, the germination rate would be the highest when the seeds sowed in autumn covering with 2 cm depth of matrix type which component of the ratio of soil, sand and organic fertilizer was 6: 3: 1. There was significant difference in the morphology and germination rate of the three habitats seeds. The habitat II seeds were the optimal choice when culture seedling. The influences of different temperatures on germination rate were different, and the dried seeds should sow in current autumn, better than the next spring.

Does fluoride influence oviposition of Anopheles stephensi in stored water habitats in an urban setting?

PubMed

Thomas, Shalu; Ravishankaran, Sangamithra; Johnson Amala Justin, N A; Asokan, Aswin; Maria Jusler Kalsingh, T; Mathai, Manu Thomas; Valecha, Neena; Eapen, Alex

2016-11-09

The physico-chemical characteristics of lentic aquatic habitats greatly influence mosquito species in selecting suitable oviposition sites; immature development, pupation and adult emergence, therefore are considerations for their preferred ecological niche. Correlating water quality parameters with mosquito breeding, as well as immature vector density, are useful for vector control operations in identifying and targeting potential breeding habitats. A total of 40 known habitats of Anopheles stephensi, randomly selected based on a vector survey in parallel, were inspected for the physical and chemical nature of the aquatic environment. Water samples were collected four times during 2013, representing four seasons (i.e., ten habitats per season). The physico-chemical variables and mosquito breeding were statistically analysed to find their correlation with immature density of An. stephensi and also co-inhabitation with other mosquito species. Anopheles stephensi prefer water with low nitrite content and high phosphate content. Parameters such as total dissolved solids, electrical conductivity, total hardness, chloride, fluoride and sulfate had a positive correlation in habitats with any mosquito species breeding (p < 0.05) and also in habitats with An. stephensi alone breeding. Fluoride was observed to have a strong positive correlation with immature density of An. stephensi in both overhead tanks and wells. Knowledge of larval ecology of vector mosquitoes is a key factor in risk assessment and for implementing appropriate and sustainable vector control operations. The presence of fluoride in potential breeding habitats and a strong positive correlation with An. stephensi immature density is useful information, as fluoride can be considered an indicator/predictor of vector breeding. Effective larval source management can be focussed on specified habitats in vulnerable areas to reduce vector abundance and malaria transmission.

Genomics meets applied ecology: Characterizing habitat quality for sloths in a tropical agroecosystem.

PubMed

Fountain, Emily D; Kang, Jung Koo; Tempel, Douglas J; Palsbøll, Per J; Pauli, Jonathan N; Zachariah Peery, M

2018-01-01

Understanding how habitat quality in heterogeneous landscapes governs the distribution and fitness of individuals is a fundamental aspect of ecology. While mean individual fitness is generally considered a key to assessing habitat quality, a comprehensive understanding of habitat quality in heterogeneous landscapes requires estimates of dispersal rates among habitat types. The increasing accessibility of genomic approaches, combined with field-based demographic methods, provides novel opportunities for incorporating dispersal estimation into assessments of habitat quality. In this study, we integrated genomic kinship approaches with field-based estimates of fitness components and approximate Bayesian computation (ABC) procedures to estimate habitat-specific dispersal rates and characterize habitat quality in two-toed sloths (Choloepus hoffmanni) occurring in a Costa Rican agricultural ecosystem. Field-based observations indicated that birth and survival rates were similar in a sparsely shaded cacao farm and adjacent cattle pasture-forest mosaic. Sloth density was threefold higher in pasture compared with cacao, whereas home range size and overlap were greater in cacao compared with pasture. Dispersal rates were similar between the two habitats, as estimated using ABC procedures applied to the spatial distribution of pairs of related individuals identified using 3,431 single nucleotide polymorphism and 11 microsatellite locus genotypes. Our results indicate that crops produced under a sparse overstorey can, in some cases, constitute lower-quality habitat than pasture-forest mosaics for sloths, perhaps because of differences in food resources or predator communities. Finally, our study demonstrates that integrating field-based demographic approaches with genomic methods can provide a powerful means for characterizing habitat quality for animal populations occurring in heterogeneous landscapes. © 2017 John Wiley & Sons Ltd.

Assessment of River Habitat Quality in the Hai River Basin, Northern China.

PubMed

Ding, Yuekui; Shan, Baoqing; Zhao, Yu

2015-09-17

We applied a river habitat quality (RHQ) assessment method to the Hai River Basin (HRB); an important economic centre in China; to obtain baseline information for water quality improvement; river rehabilitation; and watershed management. The results of the assessment showed that the river habitat in the HRB is seriously degraded. Specifically; 42.41% of the sites; accounting for a river length of 3.31 × 10⁴ km; were designated poor and bad. Habitat in the plain areas is seriously deteriorated; and nearly 50% of the sites; accounting for a river length of 1.65 × 10⁴ km; had either poor or bad habitats. River habitat degradation was attributable to the limited width of the riparian zone (≤5 m); lower coverage of riparian vegetation (≤40%); artificial land use patterns (public and industrial land); frequent occurrence of farming on the river banks and high volumes of solid waste (nearly 10 m³); single flow channels; and rare aquatic plants (≤1 category). At the regional scale; intensive artificial land use types caused by urbanization had a significant impact on the RHQ in the HRB. RHQ was significantly and negatively correlated with farmland (r = 1.000; p < 0.01) and urban land (r = 0.998; p < 0.05); and was significantly and positively correlated with grassland and woodland (r = 1.000; p < 0.01). Intensive artificial land use; created through urbanization processes; has led to a loss of the riparian zone and its native vegetation; and has disrupted the lateral connectivity of the rivers. The degradation of the already essentially black rivers is exacerbated by poor longitudinal connectivity (index of connectivity is 2.08-16.56); caused by reservoirs and sluices. For river habitat rehabilitation to be successful; land use patterns need to be changed and reservoirs and sluices will have to be regulated.

Assessment of River Habitat Quality in the Hai River Basin, Northern China

PubMed Central

Ding, Yuekui; Shan, Baoqing; Zhao, Yu

2015-01-01

We applied a river habitat quality (RHQ) assessment method to the Hai River Basin (HRB); an important economic centre in China; to obtain baseline information for water quality improvement; river rehabilitation; and watershed management. The results of the assessment showed that the river habitat in the HRB is seriously degraded. Specifically; 42.41% of the sites; accounting for a river length of 3.31 × 104 km; were designated poor and bad. Habitat in the plain areas is seriously deteriorated; and nearly 50% of the sites; accounting for a river length of 1.65 × 104 km; had either poor or bad habitats. River habitat degradation was attributable to the limited width of the riparian zone (≤5 m); lower coverage of riparian vegetation (≤40%); artificial land use patterns (public and industrial land); frequent occurrence of farming on the river banks and high volumes of solid waste (nearly 10 m3); single flow channels; and rare aquatic plants (≤1 category). At the regional scale; intensive artificial land use types caused by urbanization had a significant impact on the RHQ in the HRB. RHQ was significantly and negatively correlated with farmland (r = 1.000; p < 0.01) and urban land (r = 0.998; p < 0.05); and was significantly and positively correlated with grassland and woodland (r = 1.000; p < 0.01). Intensive artificial land use; created through urbanization processes; has led to a loss of the riparian zone and its native vegetation; and has disrupted the lateral connectivity of the rivers. The degradation of the already essentially black rivers is exacerbated by poor longitudinal connectivity (index of connectivity is 2.08–16.56); caused by reservoirs and sluices. For river habitat rehabilitation to be successful; land use patterns need to be changed and reservoirs and sluices will have to be regulated. PMID:26393628

GROWTH, SURVIVAL AND MOVEMENT OF JUVENILE SALMONIDS AS INDICATORS OF HABITAT QUALITY

EPA Science Inventory

Fish-habitat relationships have often relied on measures of fish abundance as indices of habitat quality. Indices based on abundance measures may be misleading, however, due to high turnover rates in suboptimal habitats, seasonality of habitat use, or lagged responses to habitat...

Protocols for collection of streamflow, water-quality, streambed-sediment, periphyton, macroinvertebrate, fish, and habitat data to describe stream quality for the Hydrobiological Monitoring Program, Equus Beds Aquifer Storage and Recovery Program, city of Wichita, Kansas

USGS Publications Warehouse

Stone, Mandy L.; Rasmussen, Teresa J.; Bennett, Trudy J.; Poulton, Barry C.; Ziegler, Andrew C.

2012-01-01

The city of Wichita, Kansas uses the Equus Beds aquifer, one of two sources, for municipal water supply. To meet future water needs, plans for artificial recharge of the aquifer have been implemented in several phases. Phase I of the Equus Beds Aquifer Storage and Recovery (ASR) Program began with injection of water from the Little Arkansas River into the aquifer for storage and subsequent recovery in 2006. Construction of a river intake structure and surface-water treatment plant began as implementation of Phase II of the Equus Beds ASR Program in 2010. An important aspect of the ASR Program is the monitoring of water quality and the effects of recharge activities on stream conditions. Physical, chemical, and biological data provide the basis for an integrated assessment of stream quality. This report describes protocols for collecting streamflow, water-quality, streambed-sediment, periphyton, macroinvertebrate, fish, and habitat data as part of the city of Wichita's hydrobiological monitoring program (HBMP). Following consistent and reliable methods for data collection and processing is imperative for the long-term success of the monitoring program.

Habitat use by fishes of Lake Superior. II. Consequences of diel habitat use for habitat linkages and habitat coupling in nearshore and offshore waters

USGS Publications Warehouse

Gorman, Owen T.; Yule, Daniel L.; Stockwell, Jason D.

2012-01-01

Diel migration patterns of fishes in nearshore (15–80 m depth) and offshore (>80 m) waters of Lake Superior were examined to assess the potential for diel migration to link benthic and pelagic, and nearshore and offshore habitats. In our companion article, we described three types of diel migration: diel vertical migration (DVM), diel bank migration (DBM), and no diel migration. DVM was expressed by fishes migrating from benthopelagic to pelagic positions and DBM was expressed by fishes migrating horizontally from deep to shallow waters at night. Fishes not exhibiting diel migration typically showed increased activity by moving from benthic to benthopelagic positions within demersal habitat. The distribution and biomass of fishes in Lake Superior was characterized by examining 704 bottom trawl samples collected between 2001 and 2008 from four depth zones: ≤40, 41–80, 81–160, and >160 m. Diel migration behaviors of fishes described in our companion article were applied to estimates of areal biomass (kg ha−1) for each species by depth zone. The relative strength of diel migrations were assessed by applying lake area to areal biomass estimates for each species by depth zone to yield estimates of lake-wide biomass (metric tonnes). Overall, species expressing DVM accounted for 83%, DBM 6%, and non-migration 11% of the total lake-wide community biomass. In nearshore waters, species expressing DVM represented 74% of the biomass, DBM 25%, and non-migration 1%. In offshore waters, species expressing DVM represented 85%, DBM 1%, and non-migration 14% of the biomass. Of species expressing DVM, 83% of total biomass occurred in offshore waters. Similarly, 97% of biomass of non-migrators occurred in offshore waters while 83% of biomass of species expressing DBM occurred in nearshore waters. A high correlation (R2 = 0.996) between lake area and community biomass by depth zone resulted in 81% of the lake-wide biomass occurring in offshore waters. Accentuating this

Quantifying effects of hydrological and water quality disturbances on fish with food-web modeling

NASA Astrophysics Data System (ADS)

Zhao, Changsen; Zhang, Yuan; Yang, Shengtian; Xiang, Hua; Sun, Ying; Yang, Zengyuan; Yu, Qiang; Lim, Richard P.

2018-05-01

Accurately delineating the effects of hydrological and water quality habitat factors on the aquatic biota will significantly assist the management of water resources and restoration of river ecosystems. However, current models fail to comprehensively consider the effects of multiple habitat factors on the development of fish species. In this study, a dynamic framework for river ecosystems was set up to explore the effects of multiple habitat factors in terms of hydrology and water quality on the fish community in rivers. To achieve this the biomechanical forms of the relationships between hydrology, water quality, and aquatic organisms were determined. The developing processes of the food web without external disturbance were simulated by 208 models, constructed using Ecopath With Ecosim (EWE). These models were then used to analyze changes in biomass (ΔB) of two representative fish species, Opsariichthys bidens and Carassius auratus, which are widely distributed in Asia, and thus have attracted the attention of scholars and stakeholders, due to the consequence of habitat alteration. Results showed that the relationship between the changes in fish biomass and key habitat factors can be expressed in a unified form. T-tests for the unified form revealed that the means of the two data sets of simulated and observed ΔB for these two fish species (O. bidens and C. auratus) were equal at the significance level of 5%. Compared with other ecological dynamic models, our framework includes theories that are easy to understand and has modest requirements for assembly and scientific expertise. Moreover, this framework can objectively assess the influence of hydrological and water quality variance on aquatic biota with simpler theory and little expertise. Therefore, it is easy to be put into practice and can provide a scientific support for decisions in ecological restoration made by river administrators and stakeholders across the world.

Habitat Selection by African Buffalo (Syncerus caffer) in Response to Landscape-Level Fluctuations in Water Availability on Two Temporal Scales

PubMed Central

Bennitt, Emily; Bonyongo, Mpaphi Casper; Harris, Stephen

2014-01-01

Seasonal fluctuations in water availability cause predictable changes in the profitability of habitats in tropical ecosystems, and animals evolve adaptive behavioural and spatial responses to these fluctuations. However, stochastic changes in the distribution and abundance of surface water between years can alter resource availability at a landscape scale, causing shifts in animal behaviour. In the Okavango Delta, Botswana, a flood-pulsed ecosystem, the volume of water entering the system doubled between 2008 and 2009, creating a sudden change in the landscape. We used African buffalo (Syncerus caffer) to test the hypotheses that seasonal habitat selection would be related to water availability, that increased floodwater levels would decrease forage abundance and affect habitat selection, and that this would decrease buffalo resting time, reduce reproductive success and decrease body condition. Buffalo selected contrasting seasonal habitats, using habitats far from permanent water during the rainy season and seasonally-flooded habitats close to permanent water during the early and late flood seasons. The 2009 water increase reduced forage availability in seasonally-flooded habitats, removing a resource buffer used by the buffalo during the late flood season, when resources were most limited. In response, buffalo used drier habitats in 2009, although there was no significant change in the time spent moving or resting, or daily distance moved. While their reproductive success decreased in 2009, body condition increased. A protracted period of high water levels could prove detrimental to herbivores, especially to smaller-bodied species that require high quality forage. Stochastic annual fluctuations in water levels, predicted to increase as a result of anthropogenically-induced climate change, are likely to have substantial impacts on the functioning of water-driven tropical ecosystems, affecting environmental conditions within protected areas. Buffer zones around

Habitat selection by African buffalo (Syncerus caffer) in response to landscape-level fluctuations in water availability on two temporal scales.

PubMed

Bennitt, Emily; Bonyongo, Mpaphi Casper; Harris, Stephen

2014-01-01

Seasonal fluctuations in water availability cause predictable changes in the profitability of habitats in tropical ecosystems, and animals evolve adaptive behavioural and spatial responses to these fluctuations. However, stochastic changes in the distribution and abundance of surface water between years can alter resource availability at a landscape scale, causing shifts in animal behaviour. In the Okavango Delta, Botswana, a flood-pulsed ecosystem, the volume of water entering the system doubled between 2008 and 2009, creating a sudden change in the landscape. We used African buffalo (Syncerus caffer) to test the hypotheses that seasonal habitat selection would be related to water availability, that increased floodwater levels would decrease forage abundance and affect habitat selection, and that this would decrease buffalo resting time, reduce reproductive success and decrease body condition. Buffalo selected contrasting seasonal habitats, using habitats far from permanent water during the rainy season and seasonally-flooded habitats close to permanent water during the early and late flood seasons. The 2009 water increase reduced forage availability in seasonally-flooded habitats, removing a resource buffer used by the buffalo during the late flood season, when resources were most limited. In response, buffalo used drier habitats in 2009, although there was no significant change in the time spent moving or resting, or daily distance moved. While their reproductive success decreased in 2009, body condition increased. A protracted period of high water levels could prove detrimental to herbivores, especially to smaller-bodied species that require high quality forage. Stochastic annual fluctuations in water levels, predicted to increase as a result of anthropogenically-induced climate change, are likely to have substantial impacts on the functioning of water-driven tropical ecosystems, affecting environmental conditions within protected areas. Buffer zones around

Water resources between conditions of quality and quantity in the Oued Souf region!

NASA Astrophysics Data System (ADS)

Miloudi, Abdelmonem; Remini, Bouallem

2018-05-01

Waters from the Terminal complex (TC) in the Souf region have been gushing since Spring1956 through the first drilling carried out in the municipality of Guemmar (El-Oued) to ensure the need for drinking water requirements. Water needs of the habitat and farmers are increasing with the population growth in the Souf region; there are 153 boreholes in the Terminal complex for Habitat needs, of which more than 80% are available for drinking water supply. These needs are causing negative consequences for the serene life of the Souafa by the phenomenon of water upwellings, the free water table, and the change in the quality of the waters from the Terminal complex. Our work will be conducted to produce a piezometric map of the Souf Terminal complex and to conduct a study on the quality of water resources in the Algerian south-east, leading to a diagnosis of pollution and its impact on the water. The quality of water resources is examined by the establishment of sampling and water analysis campaigns for both irrigation and public consumption, following the static measurement of water levels in the network boreholes of TC Monitoring.

Habitat connectivity as a metric for aquatic microhabitat quality: Application to Chinook salmon spawning habitat

Treesearch

Ryan Carnie; Daniele Tonina; Jim McKean; Daniel Isaak

2016-01-01

Quality of fish habitat at the scale of a single fish, at the metre resolution, which we defined here as microhabitat, has been primarily evaluated on short reaches, and their results have been extended through long river segments with methods that do not account for connectivity, a measure of the spatial distribution of habitat patches. However, recent...

Chinook salmon use of spawning patches: relative roles of habitat quality, size, and connectivity.

PubMed

Isaak, Daniel J; Thurow, Russell F; Rieman, Bruce E; Dunham, Jason B

2007-03-01

Declines in many native fish populations have led to reassessments of management goals and shifted priorities from consumptive uses to species preservation. As management has shifted, relevant environmental characteristics have evolved from traditional metrics that described local habitat quality to characterizations of habitat size and connectivity. Despite the implications this shift has for how habitats may be prioritized for conservation, it has been rare to assess the relative importance of these habitat components. We used an information-theoretic approach to select the best models from sets of logistic regressions that linked habitat quality, size, and connectivity to the occurrence of chinook salmon (Oncorhynchus tshawytscha) nests. Spawning distributions were censused annually from 1995 to 2004, and data were complemented with field measurements that described habitat quality in 43 suitable spawning patches across a stream network that drained 1150 km2 in central Idaho. Results indicated that the most plausible models were dominated by measures of habitat size and connectivity, whereas habitat quality was of minor importance. Connectivity was the strongest predictor of nest occurrence, but connectivity interacted with habitat size, which became relatively more important when populations were reduced. Comparison of observed nest distributions to null model predictions confirmed that the habitat size association was driven by a biological mechanism when populations were small, but this association may have been an area-related sampling artifact at higher abundances. The implications for habitat management are that the size and connectivity of existing habitat networks should be maintained whenever possible. In situations where habitat restoration is occurring, expansion of existing areas or creation of new habitats in key areas that increase connectivity may be beneficial. Information about habitat size and connectivity also could be used to strategically

Water quality, sediment characteristics, aquatic habitat, geomorphology, and mussel population status of the Clinch River, Virginia and Tennessee, 2009-2011

USGS Publications Warehouse

Krstolic, Jennifer L.; Johnson, Gregory C.; Ostby, Brett J.K.

2013-01-01

Chemical, physical, and biological data were collected during 2009-2011 as part of a study of the Clinch River in Virginia and Tennessee. The data from this study, data-collection methods, and laboratory analytical methods used in the study are documented in this report. The study was conducted to describe the conditions of the Clinch River and to determine if there are measurable differences in chemical, physical, or biological characteristics in a segment of the river where freshwater mussel populations are in decline, have low density, richness, little to no recruitment, and lack endangered species (low-quality reach) compared to a segment of the river where mussel assemblages have relatively high density, richness, evidence of recruitment, and support endangered species (high-quality reach). Five continuous water-quality monitors were installed and operated on the mainstem of the Clinch River and two tributaries. Discrete water-quality sample sets were collected during base-flow and stormflow conditions two sites on the Clinch River and on the Guest River, a tributary to the Clinch River predominantly in the Appalachian Plateaus Physiographic Province. Base-flow water-quality samples were collected in July and August 2011 at 15 sites along the mainstem of the Clinch River. Other analyses included longitudinal sampling along the mainstem of the Clinch River at 10 sites to evaluate bed-sediment chemistry, habitat condition, and mollusk community status. In situ freshwater mussel growth and mortality experiments were conducted with hatchery propogated Villosa iris (rainbow mussels). Tissue from the V. iris as well as tissue from 16 Actinonaias pectorosa mussels were analyzed for trace metals, and V. iris mussel tissue was analyzed for organic compounds. Data collected during this investigation were analyzed by various U.S. Geological Survey or U.S. Fish and Wildlife Service laboratories.

Local extinction of dragonfly and damselfly populations in low- and high-quality habitat patches.

PubMed

Suhonen, Jukka; Hilli-Lukkarinen, Milla; Korkeamäki, Esa; Kuitunen, Markku; Kullas, Johanna; Penttinen, Jouni; Salmela, Jukka

2010-08-01

Understanding the risk of extinction of a single population is an important problem in both theoretical and applied ecology. Local extinction risk depends on several factors, including population size, demographic or environmental stochasticity, natural catastrophe, or the loss of genetic diversity. The probability of local extinction may also be higher in low-quality sink habitats than in high-quality source habitats. We tested this hypothesis by comparing local extinction rates of 15 species of Odonata (dragonflies and damselflies) between 1930-1975 and 1995-2003 in central Finland. Local extinction rates were higher in low-quality than in high-quality habitats. Nevertheless, for the three most common species there were no differences in extinction rates between low- and high-quality habitats. Our results suggest that a good understanding of habitat quality is crucial for the conservation of species in heterogeneous landscapes.

Bull trout (Salvelinus confluentus) movement in relation to water temperature, season, and habitat features in Arrowrock Reservoir, Idaho, 2012

USGS Publications Warehouse

Maret, Terry R.; Schultz, Justin E.

2013-01-01

detected in early June, suggesting that fish used little, if any, summertime habitat within the reservoir. Water-quality profile measurements indicated that temperature could limit bull trout use of the reservoir during warm, summer months that coincide with decreased water volume. Thermal refuge during this study appeared to be limited based on scarcity of water that was 15°C and cooler. From the first week of August through the latter part of September, little if any suitable habitat remained for bull trout, with most temperatures exceeding 15°C at all locations where water quality profiles were measured.

Identifying regions vulnerable to habitat degradation under future irrigation scenarios

NASA Astrophysics Data System (ADS)

Terrado, Marta; Sabater, Sergi; Acuña, Vicenç

2016-11-01

The loss and degradation of natural habitats is a primary cause of biodiversity decline. The increasing impacts of climate and land use change affect water availability, ultimately decreasing agricultural production. Areas devoted to irrigation have been increased to compensate this reduction, causing habitat and biodiversity losses, especially in regions undergoing severe water stress. These effects might intensify under global change, probably contributing to a decrease in habitat quality. We selected four European river basins across a gradient of water scarcity and irrigation agriculture. The habitat quality in the basins was assessed as a function of habitat suitability and threats under current and future global change scenarios of irrigation. Results revealed that the most threatened regions under future scenarios of global change were among those suffering of water scarcity and with bigger areas devoted to irrigation. Loss of habitat quality reached 10% in terrestrial and 25% in aquatic ecosystems under climate change scenarios involving drier conditions. The aquatic habitats were the most degraded in all scenarios, since they were affected by threats from both the terrestrial and the aquatic parts of the basin. By identifying in advance the regions most vulnerable to habitat and biodiversity loss, our approach can assist decision makers in deciding the conservation actions to be prioritized for mitigation and adaptation to the effects of climate change, particularly front the development of irrigation plans.

Assessment of water chemistry, habitat, and benthic macroinvertebrates at selected stream-quality monitoring sites in Chester County, Pennsylvania, 1998-2000

USGS Publications Warehouse

Reif, Andrew G.

2004-01-01

Biological, chemical, and habitat data have been collected from a network of sites in Chester County, Pa., from 1970 to 2003 to assess stream quality. Forty sites in 6 major stream basins were sampled between 1998 and 2000. Biological data were used to determine levels of impairment in the benthic-macroinvertebrate community in Chester County streams and relate the impairment, in conjunction with chemical and habitat data, to overall stream quality. Biological data consisted of benthic-macroinvertebrate samples that were collected annually in the fall. Water-chemistry samples were collected and instream habitat was assessed in support of the biological sampling.Most sites in the network were designated as nonimpacted or slightly impacted by human activities or extreme climatic conditions on the basis of biological-metric analysis of benthic-macroinvertebrate data. Impacted sites were affected by factors, such as nutrient enrichment, erosion and sedimentation, point discharges, and droughts and floods. Streams in the Schuylkill River, Delaware River, and East Branch Brandywine Creek Basins in Chester County generally had low nutrient concentrations, except in areas affected by wastewater-treatment discharges, and stream habitat that was affected by erosion. Streams in the West Branch Brandywine, Christina, Big Elk, and Octoraro Creek Basins in Chester County generally had elevated nutrient concentrations and streambottom habitat that was affected by sediment deposition.Macroinvertebrate communities identified in samples from French Creek, Pigeon Creek (Schuylkill River Basin), and East Branch Brandywine Creek at Glenmoore consistently indicate good stream conditions and were the best conditions measured in the network. Macroinvertebrate communities identified in samples from Trout Creek (site 61), West Branch Red Clay Creek (site 55) (Christina River Basin), and Valley Creek near Atglen (site 34) (Octoraro Creek Basin) indicated fair to poor stream conditions and

River habitat assessment for ecological restoration of Wei River Basin, China.

PubMed

Yang, Tao; Wang, Shuo; Li, Xiaoping; Wu, Ting; Li, Li; Chen, Jia

2018-04-11

As an important composition component of river ecosystems, river habitats must undergo quality assessment to potentially provide scientific basis for river ecological restoration. Substrate composition, habitat complexity, bank erosion degree, river meandering degree, human activity intensity, vegetation buffer width, water quality, and water condition were determined as indicators for river habitat assessment. The comprehensive habitat quality index (CHQI) was established for the Wei River Basin. In addition, the indicator values were determined on the basis of a field investigation at 12 national hydrological stations distributed across the Wei, Jing, and Beiluo Rivers. The analytic hierarchy process was used to determine the indicator weights and thus distinguish the relative importance of the assessment indicator system. Results indicated that the average CHQIs for the Wei, Jing, and Beiluo Rivers were 0.417, 0.508, and 0.304, respectively. The river habitat quality for the three rivers was well. As for the whole river basin, the river habitat quality for 25% of the cross section was very well, the other 25% was well, and the 50% remaining was in critical state. The river habitat quality of the Jing River was better than that of the Wei and Beiluo Rivers.

Modeling white sturgeon movement in a reservoir: The effect of water quality and sturgeon density

USGS Publications Warehouse

Sullivan, A.B.; Jager, H.I.; Myers, R.

2003-01-01

We developed a movement model to examine the distribution and survival of white sturgeon (Acipenser transmontanus) in a reservoir subject to large spatial and temporal variation in dissolved oxygen and temperature. Temperature and dissolved oxygen were simulated by a CE-QUAL-W2 model of Brownlee Reservoir, Idaho for a typical wet, normal, and dry hydrologic year. We compared current water quality conditions to scenarios with reduced nutrient inputs to the reservoir. White sturgeon habitat quality was modeled as a function of temperature, dissolved oxygen and, in some cases, suitability for foraging and depth. We assigned a quality index to each cell along the bottom of the reservoir. The model simulated two aspects of daily movement. Advective movement simulated the tendency for animals to move toward areas with high habitat quality, and diffusion simulated density dependent movement away from areas with high sturgeon density in areas with non-lethal habitat conditions. Mortality resulted when sturgeon were unable to leave areas with lethal temperature or dissolved oxygen conditions. Water quality was highest in winter and early spring and lowest in mid to late summer. Limiting nutrient inputs reduced the area of Brownlee Reservoir with lethal conditions for sturgeon and raised the average habitat suitability throughout the reservoir. Without movement, simulated white sturgeon survival ranged between 45 and 89%. Allowing movement raised the predicted survival of sturgeon under all conditions to above 90% as sturgeon avoided areas with low habitat quality. ?? 2003 Elsevier B.V. All rights reserved.

An artificial water body provides habitat for an endangered estuarine seahorse species

NASA Astrophysics Data System (ADS)

Claassens, Louw

2016-10-01

Anthropogenic development, especially the transformation of natural habitats to artificial, is a growing concern within estuaries and coastal areas worldwide. Thesen Islands marina, an artificial water body, added 25 ha of new estuarine habitat to the Knysna Estuary in South Africa, home to the Knysna seahorse. This study aimed to answer: (I) Can an artificial water body provide suitable habitat for an endangered seahorse species? And if so (II) what characteristics of this new habitat are important in terms of seahorse utilization? Four major habitat types were identified within the marina canals: (I) artificial reno mattress (wire baskets filled with rocks); (II) Codium tenue beds; (III) mixed vegetation on sediment; and (IV) barren canal floor. Seahorses were found throughout the marina system with significantly higher densities within the reno mattress habitat. The artificial water body, therefore, has provided suitable habitat for Hippocampus capensis, a noteworthy finding in the current environment of coastal development and the increasing shift from natural to artificial.

Chinook salmon use of spawning patches: Relative roles of habitat quality, size, and connectivity

USGS Publications Warehouse

Isaak, D.J.; Thurow, R.F.; Rieman, B.E.; Dunham, J.B.

2007-01-01

Declines in many native fish populations have led to reassessments of management goals and shifted priorities from consumptive uses to species preservation. As management has shifted, relevant environmental characteristics have evolved from traditional metrics that described local habitat quality to characterizations of habitat size and connectivity. Despite the implications this shift has for how habitats may be prioritized for conservation, it has been rare to assess the relative importance of these habitat components. We used an information-theoretic approach to select the best models from sets of logistic regressions that linked habitat quality, size, and connectivity to the occurrence of chinook salmon (Oncorhynchus tshawytscha) nests. Spawning distributions were censused annually from 1995 to 2004, and data were complemented with field measurements that described habitat quality in 43 suitable spawning patches across a stream network that drained 1150 km 2 in central Idaho. Results indicated that the most plausible models were dominated by measures of habitat size and connectivity, whereas habitat quality was of minor importance. Connectivity was the strongest predictor of nest occurrence, but connectivity interacted with habitat size, which became relatively more important when populations were reduced. Comparison of observed nest distributions to null model predictions confirmed that the habitat size association was driven by a biological mechanism when populations were small, but this association may have been an area-related sampling artifact at higher abundances. The implications for habitat management are that the size and connectivity of existing habitat networks should be maintained whenever possible. In situations where habitat restoration is occurring, expansion of existing areas or creation of new habitats in key areas that increase connectivity may be beneficial. Information about habitat size and connectivity also could be used to strategically

Indicators of streamflow alteration, habitat fragmentation, impervious cover, and water quality for Massachusetts stream basins

USGS Publications Warehouse

Weiskel, Peter K.; Brandt, Sara L.; DeSimone, Leslie A.; Ostiguy, Lance J.; Archfield, Stacey A.

2010-01-01

Massachusetts streams and stream basins have been subjected to a wide variety of human alterations since colonial times. These alterations include water withdrawals, treated wastewater discharges, construction of onsite septic systems and dams, forest clearing, and urbanization—all of which have the potential to affect streamflow regimes, water quality, and habitat integrity for fish and other aquatic biota. Indicators were developed to characterize these types of potential alteration for subbasins and groundwater contributing areas in Massachusetts. The potential alteration of streamflow by the combined effects of withdrawals and discharges was assessed under two water-use scenarios. Water-use scenario 1 incorporated publicly reported groundwater withdrawals and discharges, direct withdrawals from and discharges to streams, and estimated domestic-well withdrawals and septic-system discharges. Surface-water-reservoir withdrawals were excluded from this scenario. Water-use scenario 2 incorporated all the types of withdrawal and discharge included in scenario 1 as well as withdrawals from surface-water reservoirs—all on a long-term, mean annual basis. All withdrawal and discharge data were previously reported to the State for the 2000–2004 period, except domestic-well withdrawals and septic-system discharges, which were estimated for this study. The majority of the state’s subbasins and groundwater contributing areas were estimated to have relatively minor (less than 10 percent) alteration of streamflow under water-use scenario 1 (seasonally varying water use; no surface-water-reservoir withdrawals). However, about 12 percent of subbasins and groundwater contributing areas were estimated to have extensive alteration of streamflows (greater than 40 percent) in August; most of these basins were concentrated in the outer metropolitan Boston region. Potential surcharging of streamflow in August was most commonly indicated for main-stem river subbasins, although

Habitat use by a freshwater dolphin in the low-water season

USGS Publications Warehouse

Braulik, Gill T.; Reichert, Albert P.; Ehsan, Tahir; Khan, Samiullah; Northridge, Simon P.; Alexander, Jason S.; Garstang, Richard

2012-01-01

1. Many river dolphin populations are most vulnerable during the low-water season when habitat is limited. Indus River dolphin habitat selection in the dry season was investigated using Generalized Linear Models of dolphin distribution and abundance in relation to physical features of river geomorphology and channel geometry in cross-section. 2. Dolphins selected locations in the river with significantly greater mean depth, maximum depth, cross-sectional area, and hydraulic radius, and significantly narrower river width and a lower degree of braiding than areas where dolphins were absent. They were also recorded with higher frequency at river constrictions and at confluences. 3. Channel cross-sectional area was the most important factor affecting dolphin presence and abundance, with the area of water below 1 m in depth exerting the greatest influence. Indus dolphins avoided channels with small cross-sectional area (2), presumably owing to the risk of entrapment and reduced foraging opportunities. 4. Channel geometry had a greater ability to explain dolphin distribution than river geomorphology; however, both analyses indicated similar types of habitat selection. The dolphin–habitat relationships identified in the river geomorphology analysis were scale-dependent, indicating that dolphin distribution is driven by the occurrence of discrete small-scale features, such as confluences and constrictions, as well as by broader-scale habitat complexes. 5. There are numerous plans to impound or extract more water from the Indus River system. If low-water season flows are allowed to decrease further, the amount of deeper habitat will decline, there may be insufficient patches of suitable habitat to support the dolphin population through the low-water season, and dolphins may become isolated within deeper river sections, unable or unwilling to traverse through shallows between favourable patches of habitat.

Lake trout spawning habitat in the Great Lakes - a review of current knowledge

USGS Publications Warehouse

Marsden, J. Ellen; Casselman, John M.; Edsall, Thomas A.; Elliott, Robert F.; Fitzsimons, John D.; Horns, William H.; Manny, Bruce A.; McAughey, Scott C.; Sly, Peter G.; Swanson, Bruce L.

1995-01-01

We review existing information on lake trout spawning habitat, which might indicate whether habitat is now a limiting factor in lake trout reproductive success. Lake trout spawning habitat quality is defined by the presence or absence of olfactory cues for homing, reef location with respect to the shoreline, water depth, proximity to nursery areas, reef size, contour, substrate size and shape, depth of interstitial spaces, water temperature at spawning time, water quality in interstitial spaces, and the presence of egg and fry predators. Data on factors which attracted native spawners to spawning reefs are lacking, due to the absence of historic data on egg deposition. No direct evidence of egg deposition has been collected from sites deeper than 18 m. Interstitial space and, therefore, substrate size and shape, appear to be critical for both site selection by adults and protection of eggs and fry. Water quality is clearly important for egg incubation, but the critical parameters which define water quality have not yet been well determined in the field. Exposure to wave energy, dictated in part by reef location, may maintain high water quality but may also damage or dislodge eggs. The importance of olfactory cues, water temperature, and proximity to nursery habitat to spawning trout is unclear. Limited data suggest that egg and fry predators, particularly exotic species, may critically affect fry production and survival. Although availability of physical spawning habitat is probably not limiting lake trout reproduction, changes in water quality and species composition may negatively affect early life stages. This review of habitat factors that affect early life stages of lake trout suggests several priorities for research and management.

WATER QUALITY CHANGES IN HYPORHEIC FLOW PATHS BETWEEN A LARGE GRAVEL BED RIVER AND OFF-CHANNEL ALCOVES IN OREGON, USA

EPA Science Inventory

Changes in water quality that occur as water flows along hyporheic flow paths may have important effects on surface water quality and aquatic habitat, yet very few studies have examined these hyporheic processes along large gravel bed rivers. To determine water quality changes as...

The quality of our Nation's waters: water quality in the Upper Floridan aquifer and overlying surficial aquifers, southeastern United States, 1993-2010

USGS Publications Warehouse

Berndt, Marian P.; Katz, Brian G.; Kingsbury, James A.; Crandall, Christy A.

2015-01-01

About 10 million people rely on groundwater from the Upper Floridan and surficial aquifers for drinking water. The Upper Floridan aquifer also is of primary importance to the region as a source of water for irrigation and as a source of crystal clear water that discharges to springs and streams providing recreational and tourist destinations and unique aquatic habitats. The reliance of the region on the Upper Floridan aquifer for drinking water and for the tourism and agricultural economies highlights the importance of long-term management to sustain the availability and quality of these resources.

Low-quality habitat corridors as movement conduits for two butterfly species.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haddad, Nick, M.; Tewksbury, Joshua, J.

2005-01-01

Haddad, Nick, M, and Joshua J. Tewksbury. Low-quality habitat corridors as movement conduits for two butterfly species. Ecol. Apps. 15(1):250-257. Abstract. Corridors are a primary conservation tool to increase connectivity, promote individual movement, and increase gene flow among populations in fragmented landscapes. The establishment of effective conservation corridors will depend on constructing or pre-serving connecting habitat that attracts dispersing individuals. Yet, it remains unclear whether corridors must necessarily be composed of high-quality habitat to be effective and promote dispersal and gene flow. We address this issue with two mobile, open-habitat butterfly species, Junonia coenia HuÈbner and Euptoieta claudia Cramer. Usingmore » experimental landscapes created explicitly to examine the effects of corridors on dispersal rates, we show that open-habitat corridors can serve as dispersal conduits even when corridors do not support resident butterfly populations. Both butterfly species were rare near forest edges and equally rare in narrow corridors, yet both species dispersed more often between patches connected by these corridors than between isolated patches. At least for species that can traverse corridors within a generation, corridor habitat may be lower in quality than larger patches and still increase dispersal and gene flow. For these species, abundance surveys may not accurately represent the conservation value of corridors.« less

Predicting Fish Growth Potential and Identifying Water Quality Constraints: A Spatially-Explicit Bioenergetics Approach

NASA Astrophysics Data System (ADS)

Budy, Phaedra; Baker, Matthew; Dahle, Samuel K.

2011-10-01

Anthropogenic impairment of water bodies represents a global environmental concern, yet few attempts have successfully linked fish performance to thermal habitat suitability and fewer have distinguished co-varying water quality constraints. We interfaced fish bioenergetics, field measurements, and Thermal Remote Imaging to generate a spatially-explicit, high-resolution surface of fish growth potential, and next employed a structured hypothesis to detect relationships among measures of fish performance and co-varying water quality constraints. Our thermal surface of fish performance captured the amount and spatial-temporal arrangement of thermally-suitable habitat for three focal species in an extremely heterogeneous reservoir, but interpretation of this pattern was initially confounded by seasonal covariation of water residence time and water quality. Subsequent path analysis revealed that in terms of seasonal patterns in growth potential, catfish and walleye responded to temperature, positively and negatively, respectively; crappie and walleye responded to eutrophy (negatively). At the high eutrophy levels observed in this system, some desired fishes appear to suffer from excessive cultural eutrophication within the context of elevated temperatures whereas others appear to be largely unaffected or even enhanced. Our overall findings do not lead to the conclusion that this system is degraded by pollution; however, they do highlight the need to use a sensitive focal species in the process of determining allowable nutrient loading and as integrators of habitat suitability across multiple spatial and temporal scales. We provide an integrated approach useful for quantifying fish growth potential and identifying water quality constraints on fish performance at spatial scales appropriate for whole-system management.

Environmental and Water Quality Operational Studies. General Guidelines for Monitoring Contaminants in Reservoirs

DTIC Science & Technology

1986-02-01

espacially trte for the topics of sampling and analytical methods, statistical considerations, and the design of general water quality monitoring networks. For...and to the establishment and habitat differentiation of biological populations within reservoirs. Reservoir operatirn, esp- cially the timing...8217 % - - % properties of bottom sediments, as well as specific habitat associations of biological populations of reservoirs. Thus, such heterogeneities

ASSESSING COASTAL WATERS OF AMERICAN SAMOA: TERRITORY-WIDE WATER QUALITY DATA PROVIDE A CRITICAL 'BIG-PICTURE' VIEW FOR THIS TROPICAL ARCHIPELAGO

EPA Science Inventory

The coastal waters of American Samoa’s 5 high islands (Tutuila, Aunu’u, Ofu, Olosega,and Ta’u) were surveyed in 2004 using a probabilistic design. Water quality data were collected from the near-shore coastal habitat, defined as all near-shore coastal waters including embayments,...

Habitat, Fauna, and Conservation of Florida's Deep-Water Coral Reefs

NASA Astrophysics Data System (ADS)

Reed, J. K.; Pomponi, S. A.; Messing, C. G.; Brooke, S.

2008-05-01

Various types of deep-water coral habitats are common off the southeastern United States from the Blake Plateau through the Straits of Florida to the eastern Gulf of Mexico. Expeditions in the past decade with the Johnson-Sea- Link manned submersibles, ROVs, and AUVs have discovered, mapped and compiled data on the status, distribution, habitat, and biodiversity for many of these relatively unknown deep-sea coral ecosystems. We have discovered over three hundred, high relief (15-152-m tall) coral mounds (depth 700-800 m) along the length of eastern Florida (700 km). The north Florida sites are rocky lithoherms, whereas the southern sites are primarily classic coral bioherms, capped with dense 1-2 m tall thickets of Lophelia pertusa and Enallopsammia profunda. Off southeastern Florida, the Miami Terrace escarpment (depth 300-600 m) extends nearly 150 km as a steep, rocky slope of Miocene-age phosphoritic limestone, which provides habitat for a rich biodiversity of fish and benthic invertebrates. Off the Florida Keys, the Pourtalès Terrace (depth 200- 460 m) has extensive high-relief bioherms and numerous deep-water sinkholes to depths of 250-610 m and diameters up to 800 m. The dominant, deep-water, colonial scleractinian corals in this region include Oculina varicosa, L. pertusa, E. profunda, Madrepora oculata, and Solenosmilia variabilis. Other coral species include hydrozoans (Stylasteridae), bamboo octocorals (Isididae), numerous other gorgonians, and black corals (Antipatharia). These structure-forming taxa provide habitat and living space for a relatively unknown but biologically rich and diverse community of crustaceans, mollusks, echinoderms, polychaete and sipunculan worms, and associated fishes. We have identified 142 taxa of benthic macro-invertebrates, including 66 Porifera and 57 Cnidaria. Nearly 100 species of fish have been identified to date in association with these deep-water coral habitats. Paull et al. (2000) estimated that over 40

Using land-cover change as dynamic variables in surface-water and water-quality models

USGS Publications Warehouse

Karstensen, Krista A.; Warner, Kelly L.; Kuhn, Anne

2010-01-01

Land-cover data are typically used in hydrologic modeling to establish or describe land surface dynamics. This project is designed to demonstrate the use of land-cover change data in surface-water and water-quality models by incorporating land-cover as a variable condition. The project incorporates three different scenarios that vary hydrologically and geographically: 1) Agriculture in the Plains, 2) Loon habitat in New England, and 3) Forestry in the Ozarks.

Habitat assortment of sexes and water balance in a dioecious grass.

PubMed

Fox, J F; Harrison, A Tyrone

1981-05-01

For a dioecious plant species in which males are associated with more xeric habitats and females with more mesic ones, (a) the xeric-mesic habitat difference was confirmed by measuring plant water potential, (b) and males and females had similar water balances and seemed to have no different adaptations to drought. There are slight differences in water potential between the sexes of dioecious plant species, but water balance can be more favorable in either the male or the female. On this account, we reject the "disruptive selection" hypothesis of Freeman et al. (1975) as an explanation for habitat assortment of sexes in dioecious plants. Alternative explanations, based upon parental determination of offspring sex ratios, or environmentally determined sex change, seem more likely.

Thermal quality influences effectiveness of thermoregulation, habitat use, and behaviour in milk snakes.

PubMed

Row, Jeffrey R; Blouin-Demers, Gabriel

2006-05-01

We investigated the link between thermal quality and the effectiveness of thermoregulation in milk snakes in a thermally challenging environment. We defined thermoregulatory effectiveness as the extent to which an individual maintains its body temperature (Tb) closer to the preferred range (Tset) than allowed by the thermal quality of its environment. We defined thermal quality as the magnitude of the difference between operative environmental temperatures (Te) and Tset. Because ectotherms regulate body temperatures through choice of habitat and behavioural adjustments, we also examined the link between thermoregulation, habitat use and behaviour. During 2003-2004, we located 25 individuals 890 times, and recorded their Tb. Thermal quality was lower in the spring and fall than in the summer, and was lower in forests than in open habitats. Milk snakes thermoregulated more effectively in the spring than in the summer and fall, and more effectively in the forest than in open habitats. Milk snakes had a strong preference for open habitats in all seasons, which was likely to facilitate behavioural thermoregulation. The preference for open habitats was equally strong in all seasons and, therefore, the higher effectiveness of thermoregulation was not a result of altered habitat use. Instead, milk snakes modified their behaviour and were seen basking more and moved less in the spring than in the summer.

An assessment of bird habitat quality using population growth rates

USGS Publications Warehouse

Knutson, M.G.; Powell, L.A.; Hines, R.K.; Friberg, M.A.; Niemi, G.J.

2006-01-01

Survival and reproduction directly affect population growth rate (lambda) making lambda a fundamental parameter for assessing habitat quality. We used field data, literature review, and a computer simulation to predict annual productivity and lambda for several species of landbirds breeding in floodplain and upland forests in the Midwestern United States. We monitored 1735 nests of 27 species; 760 nests were in the uplands and 975 were in the floodplain. Each type of forest habitat (upland and floodplain) was a source habitat for some species. Despite a relatively low proportion of regional forest cover, the majority of species had stable or increasing populations in all or some habitats, including six species of conservation concern. In our search for a simple analog for lambda, we found that only adult apparent survival, juvenile survival, and annual productivity were correlated with lambda; daily nest survival and relative abundance estimated from point counts were not. Survival and annual productivity are among the most costly demographic parameters to measure and there does not seem to be a low-cost alternative. In addition, our literature search revealed that the demographic parameters needed to model annual productivity and lambda were unavailable for several species. More collective effort across North America is needed to fill the gaps in our knowledge of demographic parameters necessary to model both annual productivity and lambda. Managers can use habitat-specific predictions of annual productivity to compare habitat quality among species and habitats for purposes of evaluating management plans.

Habitat quality affects the incidence of morphological abnormalities in the endangered salamander Ambystoma ordinarium

PubMed Central

2017-01-01

Identification of early warning signals previous to the occurrence of population decline or extinction is a major challenge for the conservation of animal species. Prevalence of morphological abnormalities in a population can be one of these signals. We registered morphological abnormalities in the salamander Ambystoma ordinarium. We also evaluated the relation between habitat quality and the prevalence of abnormalities in this species. We used scores from rapid bioassessment protocols (RBPs) to assess the habitat quality of streams inhabited by A. ordinarium. A preliminary survey indicated that of 29 streams where this species has been historically registered, 13 might have few or no A. ordinarium. The association between habitat quality and the incidence of morphological abnormalities was evaluated in these 16 streams. Of 502 sampled individuals, 224 (44.62%) had at least one body abnormality. Of the 224 individuals with body abnormalities, 84 (37.5%) presented more than one abnormality. Of a total of 5,522 evaluated morphological characters, 344 (6.74%) were abnormal. Partial loss of gills and missing digits were the most frequent abnormalities. Results of a binomial logistic regression indicated that the probability of a character of an individual to be abnormal was significantly associated with habitat quality; as the levels of the quality of the habitat increased, the prevalence of morphological abnormalities decreased. These results suggest that RBPs are a quick and useful method for assessing the habitat quality of streams inhabited by A. ordinarium. Given that RBPs provide rapid and cost-effective assessments of the ecological health of aquatic ecosystems, it will be important to test if the RBPs protocols can be used to rapidly assess habitat quality for other species of stream amphibians. The negative association between habitat quality and the prevalence of morpohological abnormalities that we found indicates that habitat condition plays an important

Effects of land use, stream habitat, and water quality on biological communities of wadeable streams in the Illinois River Basin of Arkansas, 2011 and 2012

USGS Publications Warehouse

Petersen, James C.; Justus, B.G.; Meredith, Bradley J.

2014-01-01

The Illinois River Basin includes an area of diverse land use in northwestern Arkansas. Land-use data collected in 2006 indicate that most of the land in the basin is agricultural. The agricultural land is used primarily for production of poultry and cattle. Eighteen sites were selected from the list of candidate sites based on drainage area, land use, presence or absence of an upstream wastewater-treatment plant, water quality, and other information gathered during the reconnaissance. An important consideration in the process was to select sites along gradients of forest to urban land use and forest to agricultural land use. Water-quality samples were collected for analysis of nutrients, and a multiparameter field meter was used to measure water temperature, specific conductance, pH, and dissolved oxygen. Streamflow was measured immediately following the water-quality sampling. Macroalgae coverage was estimated and periphyton, macroinvertebrate, and fish communities were sampled at each site. Stream habitat also was assessed. Many types of land-use, water-quality, and habitat factors affected one or more aspects of the biological communities. Several macroinvertebrate and fish metrics changed in response to changes in percent forest; sites that would be considered most disturbed, based on these metrics, are sites with the highest percentages of urban land use in their associated basins. The presence of large mats of macroalgae was one of the most noticeable biological characteristics in several streams within the Illinois River Basin. The highest macroalgae percent cover values were recorded at four sites downstream from wastewater-treatment plants. Macroalgae percent cover was strongly correlated only with bed substrate size, canopy closure, and specific conductance. Periphyton metrics were most often and most strongly correlated with riparian shading, specific conductance, substrate turbidity, percent agriculture, poultry house density, and unpaved road density

Influences of water and sediment quality and hydrologic processes on mussels in the Clinch River

USGS Publications Warehouse

Johnson, Gregory C.; Krstolic, Jennifer L.; Ostby, Brett J.K.

2014-01-01

Segments of the Clinch River in Virginia have experienced declining freshwater mussel populations during the past 40 years, while other segments of the river continue to support some of the richest mussel communities in the country. The close proximity of these contrasting reaches provides a study area where differences in climate, hydrology, and historic mussel distribution are minimal. The USGS conducted a study between 2009 and 2011 to evaluate possible causes of the mussel declines. Evaluation of mussel habitat showed no differences in physical habitat quality, leaving water and sediment quality as possible causes for declines. Three years of continuous water-quality data showed higher turbidity and specific conductance in the reaches with low-quality mussel assemblages compared to reaches with high-quality mussel assemblages. Discrete water-quality samples showed higher major ions and metals concentrations in the low-quality reach. Base-flow samples contained high major ion and metal concentrations coincident to low-quality mussel populations. These results support a conceptual model of dilution and augmentation where increased concentrations of major ions and other dissolved constituents from mined tributaries result in reaches with declining mussel populations. Tributaries from unmined basins provide water with low concentrations of dissolved constituents, diluting reaches of the Clinch River where high-quality mussel populations occur.

An evaluation of effects of groundwater exchange on nearshore habitats and water quality of western Lake Erie

USGS Publications Warehouse

Haack, Sheridan K.; Neff, Brian P.; Rosenberry, Donald O.; Savino, Jacqueline F.; Lundstrom, Scott C.

2005-01-01

Historically, the high potentiometric surface of groundwater in the Silurian/Devonian carbonate aquifer in Monroe County, MI resulted in discharge of highly mineralized, SO4-rich groundwater to the Lake Erie shoreline near both Erie State Game Area (ESGA) and Pointe Mouillee State Game Area (PMSGA). Recently, regional groundwater levels near PMSGA have been drawn down as much as 45 m below lake level in apparent response to quarry dewatering. From August to November of 2003, we conducted preliminary studies of groundwater flow dynamics and chemistry, shallow lake water chemistry, and fish and invertebrate communities at both sites. Consistent with regional observations, groundwater flow direction in the nearshore at ESGA was upward, or toward Lake Erie, and shallow nearshore groundwater chemistry was influenced by regional groundwater chemistry. In contrast, at PMSGA, the groundwater flow potential was downward and lake water, influenced by quarry discharge seeping downward into nearshore sediments, produced a different lake and shallow groundwater chemistry than at ESGA. Although the invertebrate and young fish community was similar at the two sites, taxonomic groups tolerant of degraded water quality were more prevalent at PMSGA. Sensitive taxa were more prevalent at ESGA. We propose a conceptual model, based on well-described models of groundwater/seawater interaction along coastal margins, to describe the interconnection among geologic, hydrologic, chemical, and biological processes in the different nearshore habitats of Lake Erie, and we identify processes that warrant further detailed study in the Great Lakes.

Coast salish and U.S. Geological Survey: Tribal journey water quality project

USGS Publications Warehouse

Akin, Sarah K.; Grossman, Eric E.; Lekanof, Debra; O'Hara, Charles J.

2008-01-01

The Coast Salish Peoples and U.S. Geological Survey (USGS) have commenced on a partnership to examine water quality throughout the Georgia Straits and Puget Sound, blending tradition and science, in response to this deterioration of coastal environments and loss of essential habitats and marine resources of cultural and ecological importance throughout the ancestral waters of the Salish Sea. This report describes the Coast Salish Tribal Journey Water Quality Project, its inception, the results of the 2008 Tribal Journey project, lessons learned, and recommendations for future directions.

Water Habitat Study: Prediction Makes It More Meaningful.

ERIC Educational Resources Information Center

Glasgow, Dennis R.

1982-01-01

Suggests a teaching strategy for water habitat studies to help students make a meaningful connection between physiochemical data (dissolved oxygen content, pH, and water temperature) and biological specimens they collect. Involves constructing a poster and using it to make predictions. Provides sample poster. (DC)

Habitat Heterogeneity Variably Influences Habitat Selection by Wild Herbivores in a Semi-Arid Tropical Savanna Ecosystem

PubMed Central

Muposhi, Victor K.; Gandiwa, Edson; Chemura, Abel; Bartels, Paul; Makuza, Stanley M.; Madiri, Tinaapi H.

2016-01-01

An understanding of the habitat selection patterns by wild herbivores is critical for adaptive management, particularly towards ecosystem management and wildlife conservation in semi arid savanna ecosystems. We tested the following predictions: (i) surface water availability, habitat quality and human presence have a strong influence on the spatial distribution of wild herbivores in the dry season, (ii) habitat suitability for large herbivores would be higher compared to medium-sized herbivores in the dry season, and (iii) spatial extent of suitable habitats for wild herbivores will be different between years, i.e., 2006 and 2010, in Matetsi Safari Area, Zimbabwe. MaxEnt modeling was done to determine the habitat suitability of large herbivores and medium-sized herbivores. MaxEnt modeling of habitat suitability for large herbivores using the environmental variables was successful for the selected species in 2006 and 2010, except for elephant (Loxodonta africana) for the year 2010. Overall, large herbivores probability of occurrence was mostly influenced by distance from rivers. Distance from roads influenced much of the variability in the probability of occurrence of medium-sized herbivores. The overall predicted area for large and medium-sized herbivores was not different. Large herbivores may not necessarily utilize larger habitat patches over medium-sized herbivores due to the habitat homogenizing effect of water provisioning. Effect of surface water availability, proximity to riverine ecosystems and roads on habitat suitability of large and medium-sized herbivores in the dry season was highly variable thus could change from one year to another. We recommend adaptive management initiatives aimed at ensuring dynamic water supply in protected areas through temporal closure and or opening of water points to promote heterogeneity of wildlife habitats. PMID:27680673

ECOLOGICAL ASSESSMENT CALIBRATION OF WATER QUALITY IN ESTERO BAY MX964227

EPA Science Inventory

This project will produce a GIS database and habitat maps of benthic substrates and biological assemblages within the Estero Bay Aquatic Preserve. A biological approach for identifying ambient water quality conditions will be developed. This will increase awareness among resource...

Effects of Habitat Characteristics and Water Quality on Macroinvertebrate Communities along the Neversink Riverin Southeastern New York, 1991-2001

USGS Publications Warehouse

Ernst, Anne G.; Baldigo, Barry P.; Schuler, George E.; Apse, Colin D.; Carter, James L.; Lester, Gary T.

2008-01-01

The Neversink River, in the Catskill Mountains of southeastern New York State, feeds the Neversink Reservoir, which diverts 85 percent of the river?s flow to New York City. Acidification of several headwater reaches has affected macroinvertebrate assemblages throughout the river system above the reservoir, and the alteration of flow conditions below the reservoir dam has affected macroinvertebrate assemblages for at least 10 kilometers downstream from the reservoir. In 1999, the U.S. Geological Survey, in cooperation with The Nature Conservancy, compiled data from 30 stream reaches to quantify the effects of acidification and of the reservoir on the structure and function of macroinvertebrate assemblages throughout the Neversink River. Acidic headwater reaches supported greater numbers of acid-tolerant chironomid taxa and fewer numbers of acid-sensitive Ephemeroptera and Trichoptera than neutral reaches, and fewer scraper individuals and more shredder individuals. The 14 reaches below the reservoir, with sharply decreased flows and altered flow patterns compared to reaches above the reservoir, supported more Chironomidae and fewer Ephemeroptera and Trichoptera than the upper reaches; they also had greater numbers of shredder individuals and fewer scraper and filterer individuals than reaches above the reservoir. Water-quality variables such as pH and aluminum concentration appear to have affected macroinvertebrate assemblages more strongly in the headwaters than below the reservoir, whereas physical-habitat variables such as mean channel width and water temperature have affected these assemblages more strongly downstream from the reservoir than in the headwaters. The water-quality changes due to acidification, combined with the decreased flows and lowered water temperatures below the reservoir, have disrupted downstream continuum of macroinvertebrate communities that would normally be observed from the headwaters to the mouth. The information presented herein

Chesapeake Bay Program Water Quality Database

EPA Pesticide Factsheets

The Chesapeake Information Management System (CIMS), designed in 1996, is an integrated, accessible information management system for the Chesapeake Bay Region. CIMS is an organized, distributed library of information and software tools designed to increase basin-wide public access to Chesapeake Bay information. The information delivered by CIMS includes technical and public information, educational material, environmental indicators, policy documents, and scientific data. Through the use of relational databases, web-based programming, and web-based GIS a large number of Internet resources have been established. These resources include multiple distributed on-line databases, on-demand graphing and mapping of environmental data, and geographic searching tools for environmental information. Baseline monitoring data, summarized data and environmental indicators that document ecosystem status and trends, confirm linkages between water quality, habitat quality and abundance, and the distribution and integrity of biological populations are also available. One of the major features of the CIMS network is the Chesapeake Bay Program's Data Hub, providing users access to a suite of long- term water quality and living resources databases. Chesapeake Bay mainstem and tidal tributary water quality, benthic macroinvertebrates, toxics, plankton, and fluorescence data can be obtained for a network of over 800 monitoring stations.

Model development for the assessment of terrestrial and aquatic habitat quality in conservation planning.

PubMed

Terrado, Marta; Sabater, Sergi; Chaplin-Kramer, Becky; Mandle, Lisa; Ziv, Guy; Acuña, Vicenç

2016-01-01

There is a growing pressure of human activities on natural habitats, which leads to biodiversity losses. To mitigate the impact of human activities, environmental policies are developed and implemented, but their effects are commonly not well understood because of the lack of tools to predict the effects of conservation policies on habitat quality and/or diversity. We present a straightforward model for the simultaneous assessment of terrestrial and aquatic habitat quality in river basins as a function of land use and anthropogenic threats to habitat that could be applied under different management scenarios to help understand the trade-offs of conservation actions. We modify the InVEST model for the assessment of terrestrial habitat quality and extend it to freshwater habitats. We assess the reliability of the model in a severely impaired basin by comparing modeled results to observed terrestrial and aquatic biodiversity data. Estimated habitat quality is significantly correlated with observed terrestrial vascular plant richness (R(2)=0.76) and diversity of aquatic macroinvertebrates (R(2)=0.34), as well as with ecosystem functions such as in-stream phosphorus retention (R(2)=0.45). After that, we analyze different scenarios to assess the suitability of the model to inform changes in habitat quality under different conservation strategies. We believe that the developed model can be useful to assess potential levels of biodiversity, and to support conservation planning given its capacity to forecast the effects of management actions in river basins. Copyright © 2015 Elsevier B.V. All rights reserved.

Wolves adapt territory size, not pack size to local habitat quality.

PubMed

Kittle, Andrew M; Anderson, Morgan; Avgar, Tal; Baker, James A; Brown, Glen S; Hagens, Jevon; Iwachewski, Ed; Moffatt, Scott; Mosser, Anna; Patterson, Brent R; Reid, Douglas E B; Rodgers, Arthur R; Shuter, Jen; Street, Garrett M; Thompson, Ian D; Vander Vennen, Lucas M; Fryxell, John M

2015-09-01

1. Although local variation in territorial predator density is often correlated with habitat quality, the causal mechanism underlying this frequently observed association is poorly understood and could stem from facultative adjustment in either group size or territory size. 2. To test between these alternative hypotheses, we used a novel statistical framework to construct a winter population-level utilization distribution for wolves (Canis lupus) in northern Ontario, which we then linked to a suite of environmental variables to determine factors influencing wolf space use. Next, we compared habitat quality metrics emerging from this analysis as well as an independent measure of prey abundance, with pack size and territory size to investigate which hypothesis was most supported by the data. 3. We show that wolf space use patterns were concentrated near deciduous, mixed deciduous/coniferous and disturbed forest stands favoured by moose (Alces alces), the predominant prey species in the diet of wolves in northern Ontario, and in proximity to linear corridors, including shorelines and road networks remaining from commercial forestry activities. 4. We then demonstrate that landscape metrics of wolf habitat quality - projected wolf use, probability of moose occupancy and proportion of preferred land cover classes - were inversely related to territory size but unrelated to pack size. 5. These results suggest that wolves in boreal ecosystems alter territory size, but not pack size, in response to local variation in habitat quality. This could be an adaptive strategy to balance trade-offs between territorial defence costs and energetic gains due to resource acquisition. That pack size was not responsive to habitat quality suggests that variation in group size is influenced by other factors such as intraspecific competition between wolf packs. © 2015 The Authors. Journal of Animal Ecology © 2015 British Ecological Society.

The global distribution of deep-water Antipatharia habitat

NASA Astrophysics Data System (ADS)

Yesson, Chris; Bedford, Faye; Rogers, Alex D.; Taylor, Michelle L.

2017-11-01

Antipatharia are a diverse group of corals with many species found in deep water. Many Antipatharia are habitat for associates, have extreme longevity and some species can occur beyond 8500 m depth. As they are major constituents of'coral gardens', which are Vulnerable Marine Ecosystems (VMEs), knowledge of their distribution and environmental requirements is an important pre-requisite for informed conservation planning particularly where the expense and difficulty of deep-sea sampling prohibits comprehensive surveys. This study uses a global database of Antipatharia distribution data to perform habitat suitability modelling using the Maxent methodology to estimate the global extent of black coral habitat suitability. The model of habitat suitability is driven by temperature but there is notable influence from other variables of topography, surface productivity and oxygen levels. This model can be used to predict areas of suitable habitat, which can be useful for conservation planning. The global distribution of Antipatharia habitat suitability shows a marked contrast with the distribution of specimen observations, indicating that many potentially suitable areas have not been sampled, and that sampling effort has been disproportionate to shallow, accessible areas inside marine protected areas (MPAs). Although 25% of Antipatharia observations are located in MPAs, only 7-8% of predicted suitable habitat is protected, which is short of the Convention on Biological Diversity target to protect 10% of ocean habitats by 2020.

Interagency field manual for the collection of water-quality data

USGS Publications Warehouse

Lurry, Dee L.; Kolbe, Christine M.

2000-01-01

The USEPA, IBWC, USGS, and Texas Natural Resource Conservation Commission (TNRCC) have been working cooperatively to establish a Water-Quality Monitoring Council for the international reach of the Rio Grande (Río Bravo). A similar effort is occurring along the western international boundary with interested partners including the U.S. Bureau of Reclamation (BOR), Arizona Department of Environmental Quality (ADEQ), and the California Regional Water Quality Control Board (CRWQCB). As of February 1997, the partners agreed to work towards greater cooperation, specifically: 1. to revise the 1977 Joint Report of IBWC Engineers as specified in IBWC Minute No. 289; 2. to implement a binational Intergovernmental Task Force for Water-Quality Monitoring (ITFM) workgroup by inviting the participation of cooperators from Mexico; 3. to review and revise each agency’s existing monitoring network to reduce interagency redundancy; 4. to develop a bilingual manual for water-quality monitoring that would describe various field methods used for sampling water, aquatic biology, and sediment, and for assessing stream habitat; and selection of methods on the basis of DQOs, representativeness, and limitations; 5. to establish a common, easily accessible water-quality database; and 6. to hold joint training programs in water-quality monitoring and data management. Part of the fourth goal—to develop a field manual for water-sample-collection methods—will be accomplished with the publication of this manual.

EFFECT OF URBANIZATION ON FISH ASSEMBLAGES AND HABITAT QUALITY IN A PIEDMONT RIVER BASIN

EPA Science Inventory

We quantified the relationships among urbanization, fishes, and habitat quality to determine how assemblags respond to urbanization and if a habitat quality assessment reflects urban effects on stream ecosystems. We sampled 30 wadeable streams along an urban gradient in the Etow...

75 FR 11194 - San Diego County Water Authority Natural Communities Conservation Program/Habitat Conservation...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-10

... Diego County Water Authority Natural Communities Conservation Program/Habitat Conservation Plan, San... meetings for the San Diego County Water Authority's (Water Authority/Applicant) draft Natural Communities Conservation Plan (NCCP)/Habitat Conservation Plan (HCP) prepared in application to us for an incidental take...

Global habitat suitability for framework-forming cold-water corals.

PubMed

Davies, Andrew J; Guinotte, John M

2011-04-15

Predictive habitat models are increasingly being used by conservationists, researchers and governmental bodies to identify vulnerable ecosystems and species' distributions in areas that have not been sampled. However, in the deep sea, several limitations have restricted the widespread utilisation of this approach. These range from issues with the accuracy of species presences, the lack of reliable absence data and the limited spatial resolution of environmental factors known or thought to control deep-sea species' distributions. To address these problems, global habitat suitability models have been generated for five species of framework-forming scleractinian corals by taking the best available data and using a novel approach to generate high resolution maps of seafloor conditions. High-resolution global bathymetry was used to resample gridded data from sources such as World Ocean Atlas to produce continuous 30-arc second (∼1 km(2)) global grids for environmental, chemical and physical data of the world's oceans. The increased area and resolution of the environmental variables resulted in a greater number of coral presence records being incorporated into habitat models and higher accuracy of model predictions. The most important factors in determining cold-water coral habitat suitability were depth, temperature, aragonite saturation state and salinity. Model outputs indicated the majority of suitable coral habitat is likely to occur on the continental shelves and slopes of the Atlantic, South Pacific and Indian Oceans. The North Pacific has very little suitable scleractinian coral habitat. Numerous small scale features (i.e., seamounts), which have not been sampled or identified as having a high probability of supporting cold-water coral habitat were identified in all ocean basins. Field validation of newly identified areas is needed to determine the accuracy of model results, assess the utility of modelling efforts to identify vulnerable marine ecosystems for

WATER QUALITY CHANGES IN HYPORHEIC FLOW AT THE AQUATIC-TERRESTRIAL INTERFACE OF A LARGER RIVER

EPA Science Inventory

Exchange between river water and groundwater in hyporheic flow at the aquatic-terrestrial interface can importantly affect water quality and aquatic habitat in the main channel of large rivers and at off-channel sites that include flowing and stagnant side channels. With tracer ...

Competition and habitat quality influence age and sex distribution in wintering Rusty Blackbirds

Treesearch

Claudia Mettke-Hofmann; Paul B. Hamel; Gerhard Hofmann; Theodore J. Zenzal Jr.; Anne Pellegrini; Jennifer Malpass; Megan Garfinkel; Nathan Schiff; Russell Greenberg

2015-01-01

Bird habitat quality is often inferred from species abundance measures during the breeding and non-breeding season and used for conservation management decisions. However, during the non-breeding season age and sex classes often occupy different habitats which suggest a need for more habitat-specific data. Rusty Blackbird (Euphagus carolinus) is a...

Moisture as a determinant of habitat quality for a nonbreeding Neotropical migratory songbird

Treesearch

Joseph A.M. Smith; Leonard R. Reitsma; Peter P. Marra

2010-01-01

Identifying the determinants of habitat quality for a species is essential for understanding how populations are limited and regulated. Spatiotemporal variation in moisture and its influence on food availability may drive patterns of habitat occupancy and demographic outcomes. Nonbreeding migratory birds in the neotropics occupy a range of habitat types that vary with...

HABSEED: a Simple Spatially Explicit Meta-Populations Model Using Remote Sensing Derived Habitat Quality Data

NASA Astrophysics Data System (ADS)

Heumann, B. W.; Guichard, F.; Seaquist, J. W.

2005-05-01

The HABSEED model uses remote sensing derived NPP as a surrogate for habitat quality as the driving mechanism for population growth and local seed dispersal. The model has been applied to the Sahel region of Africa. Results show that the functional response of plants to habitat quality alters population distribution. Plants more tolerant of medium quality habitat have greater distributions to the North while plants requiring only the best habitat are limited to the South. For all functional response types, increased seed production results in diminishing returns. Functional response types have been related to life history tradeoffs and r-K strategies based on the results. Results are compared to remote sensing derived vegetation land cover.

Inactivation of koi-herpesvirus in water using bacteria isolated from carp intestines and carp habitats.

PubMed

Yoshida, N; Sasaki, R-K; Kasai, H; Yoshimizu, M

2013-12-01

Since its first outbreak in Japan in 2003, koi-herpesvirus (KHV) remains a challenge to the carp Cyprinus carpio L. breeding industry. In this study, inactivation of KHV in water from carp habitats (carp habitat water) was investigated with the aim of developing a model for rapidly inactivating the pathogen in aquaculture effluent. Experiments with live fish showed that, in carp habitat water, KHV lost its infectivity within 3 days. Indications were that inactivation of KHV was caused by the antagonistic activity of bacteria (anti-KHV bacteria) in the water from carp habitats. Carp habitat water and the intestinal contents of carp were therefore screened for anti-KHV bacteria. Of 581 bacterial isolates, 23 showed anti-KHV activity. An effluent treatment model for the disinfection of KHV in aquaculture effluent water using anti-KHV bacteria was developed and evaluated. The model showed a decrease in cumulative mortality and in the number of KHV genome copies in kidney tissue of fish injected with treated effluent compared with a positive control. It is thought that anti-KHV bacteria isolated from the intestinal contents of carp and from carp habitat water can be used to control KHV outbreaks. © 2013 John Wiley & Sons Ltd.

Assessing ecological water quality with macroinvertebrates and fish: a case study from a small Mediterranean river.

PubMed

Cheimonopoulou, Maria Th; Bobori, Dimitra C; Theocharopoulos, Ioannis; Lazaridou, Maria

2011-02-01

Biological elements, such as benthic macroinvertebrates and fish, have been used in assessing the ecological quality of rivers according to the requirements of the Water Framework Directive. However, the concurrent use of multiple organism groups provides a broader perspective for such evaluations, since each biological element may respond differently to certain environmental variables. In the present study, we assessed the ecological quality of a Greek river (RM4 type), during autumn 2003 and spring 2004 at 10 sites, with benthic macroinvertebrates and fish. Hydromorphological and physicochemical parameters, habitat structure, and riparian vegetation were also considered. Pollution sensitive macroinvertebrate taxa were more abundant at headwaters, which had good/excellent water quality according to the Hellenic Evaluation System (HES). The main river reaches possessed moderate water quality, while downstream sites were mainly characterised as having bad or poor water quality, dominated by pollution-tolerant macroinvertebrate taxa. Macroinvertebrates related strongly to local stressors as chemical degradation (ordination analysis CCA) and riparian quality impairment (bivariate analysis) while fish did not. Fish were absent from the severely impacted lower river reaches. Furthermore, external pathological signs were observed in fish caught at certain sites. A combined use of both macroinvertebrates and fish in biomonitoring programs is proposed for providing a safer assessment of local and regional habitat impairment.

Big game habitat use in southeastern Montana

Treesearch

James G. MacCracken; Daniel W. Uresk

1984-01-01

The loss of suitable, high quality habitat is a major problem facing big game managers in the western United States. Agricultural, water, road and highway, housing, and recreational development have contributed to loss of natural big game habitat (Wallmo et al. 1976, Reed 1981). In the western United States, surface mining of minerals has great potential to adversely...

Quantifying Relationships between Water Quality and Aquatic Life Use Attainment using Sediment Profile Imagery (SPI)

EPA Science Inventory

We present results from a monthly SPI and water quality survey of nine stations along a transect in the Pensacola Bay estuary spanning the salinity gradient from Escambia River to the Gulf of Mexico. We evaluated Benthic Habitat Quality (Nilsson and Rosenberg 1997) derived from s...

Feeding habitat quality and behavioral trade-offs in chimpanzees: a case for species distribution models.

PubMed

Foerster, Steffen; Zhong, Ying; Pintea, Lilian; Murray, Carson M; Wilson, Michael L; Mjungu, Deus C; Pusey, Anne E

2016-01-01

The distribution and abundance of food resources are among the most important factors that influence animal behavioral strategies. Yet, spatial variation in feeding habitat quality is often difficult to assess with traditional methods that rely on extrapolation from plot survey data or remote sensing. Here, we show that maximum entropy species distribution modeling can be used to successfully predict small-scale variation in the distribution of 24 important plant food species for chimpanzees at Gombe National Park, Tanzania. We combined model predictions with behavioral observations to quantify feeding habitat quality as the cumulative dietary proportion of the species predicted to occur in a given location. This measure exhibited considerable spatial heterogeneity with elevation and latitude, both within and across main habitat types. We used model results to assess individual variation in habitat selection among adult chimpanzees during a 10-year period, testing predictions about trade-offs between foraging and reproductive effort. We found that nonswollen females selected the highest-quality habitats compared with swollen females or males, in line with predictions based on their energetic needs. Swollen females appeared to compromise feeding in favor of mating opportunities, suggesting that females rather than males change their ranging patterns in search of mates. Males generally occupied feeding habitats of lower quality, which may exacerbate energetic challenges of aggression and territory defense. Finally, we documented an increase in feeding habitat quality with community residence time in both sexes during the dry season, suggesting an influence of familiarity on foraging decisions in a highly heterogeneous landscape.

Water quality parameters and total aerobic bacterial and vibrionaceae loads in eastern oysters (Crassostrea virginica) from oyster gardening sites

USDA-ARS?s Scientific Manuscript database

Oyster gardening is a practice designed to restore habitat for marine life and to improve water quality. This study determined physical and chemical water quality parameters at two oyster gardening sites in the Delaware Inland Bays and compared them with total aerobic bacteria and Vibrionaceae conc...

Propagule Limitation, Disparate Habitat Quality, and Variation in Phenotypic Selection at a Local Species Range Boundary

PubMed Central

Moore, Kara A.; Stanton, Maureen L.

2014-01-01

Adaptation to novel conditions beyond current range boundaries requires the presence of suitable sites within dispersal range, but may be impeded when emigrants encounter poor habitat and sharply different selection pressures. We investigated fine-scale spatial heterogeneity in ecological dynamics and selection at a local population boundary of the annual plant Gilia tricolor. In two years, we planted G. tricolor seeds in core habitat, margin habitat at the edge of the local range, and exterior habitat in order to measure spatial and temporal variation in habitat quality, opportunity for selection, and selection on phenotypic traits. We found a striking decline in average habitat quality with distance from the population core, yet some migrant seeds were successful in suitable, unoccupied microsites at and beyond the range boundary. Total and direct selection on four out of five measured phenotypic traits varied across habitat zones, as well as between years. Moreover, the margin habitat often exerted unique selection pressures that were not intermediate between core and exterior habitats. This study reveals that a combination of ecological and evolutionary forces, including propagule limitation, variation in habitat quality and spatial heterogeneity in phenotypic selection may reduce opportunities for adaptive range expansion, even across a very local population boundary. PMID:24717472

The areal extent of brown shrimp habitat suitability in Mobile Bay, Alabama, USA: Targeting vegetated habitat restoration

USGS Publications Warehouse

Smith, L.M.; Nestlerode, J.A.; Harwell, L.C.; Bourgeois, P.

2010-01-01

The availability of wetlands and shallow water habitats significantly influences Gulf of Mexico (GOM) penaeid shrimp fishery productivity. However, the GOM region has the highest rate of wetland loss in the USA. Protection and management of these vital GOM habitats are critical to sustainable shrimp fisheries. Brown shrimp (Farfantepenaeus aztecus) are a major component of GOM fisheries. We present an approach for estimating the areal extent of suitable habitat for post-larval and juvenile brown shrimp in Mobile Bay, Alabama, using an existing habitat suitability index model for the northern GOM calculated from probabilistic survey of water quality and sediment data, land cover data, and submerged aquatic vegetation coverages. This estuarine scale approach is intended to support targeted protection and restoration of these habitats. These analyses indicate that approximately 60% of the area of Mobile Bay is categorized as suitable to near optimal for post-larval and juvenile shrimp and 38% of the area is marginally to minimally suitable. We identify potential units within Mobile Bay for targeted restoration to improve habitat suitability. ?? 2010 Springer Science+Business Media B.V.

The big squeeze: ecosystem change and contraction of habitat for newly discovered deep-water reefs off the U.S. West Coast

NASA Astrophysics Data System (ADS)

Wickes, L.; Etnoyer, P. J.; Lauermann, A.; Rosen, D.

2016-02-01

Cold-water reefs are fragile, complex ecosystems that extend into the bathyal depths of the ocean, creating three dimensional structure and habitat for a diversity of deep-water invertebrates and fishes. The cold waters of the California Current support a diverse assemblage of these corals at relatively shallow depths close to shore. At these depths and locations the communities face a multitude of stressors, including low carbonate saturations, hypoxia, changing temperature, and coastal pollution. The current study employed ROV surveys (n=588, 2003-2015) to document the distribution of deep-sea corals in the Southern California Bight, including the first description of a widespread reef-building coral in the naturally acidified waters off the U.S. West Coast. We provide empirical evidence of species survival in the corrosive waters (Ωarag 0.67-1.86), but find loss of reef integrity. Recent publications have implied acclimation, resistance, and resilience of cold-water reef-building corals to ocean acidification, but results of this study indicate a cost to skeletal framework development with a subsequent loss of coral habitat. While ocean acidification and declines in oxygen are expected to further impinge on Lophelia at depth (𝑥̅=190 m), surface warming and coastal polution may affect shallower populations and mesophotic reef assemblages, resulting in a contraction of available coral habitat. Recent observations of die offs of gorgonians and antipatharians from surveys in shallow (50 m) and deep water (500 m) provide compelling evidence of ongoing ecosystem changes. Concurrent losses in habitat quality in deep and mesophotic waters suggest that corals may be "squeezed" into a more restricted depth range. New monitoring efforts aim to characterize the health and condition of deep corals with respect to gradients in carbonate chemistry, coastal pollution and changing temperatures, to assess vulnerability and both current and future habitat suitability.

Early successional forest habitats and water resources

Treesearch

James Vose; Chelcy Ford

2011-01-01

Tree harvests that create early successional habitats have direct and indirect impacts on water resources in forests of the Central Hardwood Region. Streamflow increases substantially immediately after timber harvest, but increases decline as leaf area recovers and biomass aggrades. Post-harvest increases in stormflow of 10–20%, generally do not contribute to...

Water Quality Trends in the Entiat River Watershed: 2007–2010

Treesearch

Richard D. Woodsmith; Pamela K. Wilkins; Andy Bookter

2013-01-01

A large, multiagency effort is underway in the interior Columbia River basin (ICRB) to restore salmon, trout, and char listed as threatened or endangered under the 1973 federal Endangered Species Act. Water quantity and quality are widely recognized as important components of habitat for these depleted salmonid populations. There is also broad concern about...

The link between water quality and tidal marshes in a highly impacted estuary.

NASA Astrophysics Data System (ADS)

Meire, Patrick; Maris, Tom; van Damme, Stefan; Jacobs, Sander; Cox, Tom; Struyf, Eric

2010-05-01

The Schelde estuary is one of the most heavily impacted estuaries in Europe. During several decades, untreated waste water from large cities (e.g. Brussels, Antwerp, Valenciennes, Lille) and industries was discharged in the river. As a result, the Schelde estuary has the reputation of being one of the most polluted estuaries in Europe. For a long time (approx. 1950 - 1995) all forms of higher life (macro-invertebrates and fish) were absent in the fresh and brackish parts of the estuary. Due to European legislation, a large part of the sewage water is now treated resulting in a significant recovery of water quality in the estuary. However, next to water quality, the estuary also suffered serious habitat losses during the last decades, mostly due to economic development and changing hydrological conditions causing more erosion. Over the last fifteen years, the management of the estuary has changed fundamentally. It is now more and more focused on the restoration of ecosystem services. In this presentation we will document the changes in water quality over the last 50 years and summarize recent work on the role of tidal marshes on water quality within the freshwater part of the Schelde estuary. Our results stress the important of taking into account ecosystem services and habitat restoration for long-term estuarine management. .After decades of high inorganic nutrient concentrations and recurring anoxia and hypoxia, we observed a paradoxical increase in chlorophyll-a concentrations with decreasing nutrient inputs, indicating a regime shift. Our results indicate that the recovery of a hypereutrophied systems towards a classical eutrophied state, needs the reduction of waste loads below certain thresholds. Paradoxically, phytoplankton production was inhibited by high ammonia or low oxygen concentrations. The system state change is accompanied by large fluctuations in oxygen concentrations. The improved water quality resulted in a remarkable recovery of different groups

Long-term habitat changes in a protected area: Implications for herpetofauna habitat management and restoration.

PubMed

Markle, Chantel E; Chow-Fraser, Gillian; Chow-Fraser, Patricia

2018-01-01

Point Pelee National Park, located at the southern-most tip of Canada's mainland, historically supported a large number of herpetofauna species; however, despite nearly a century of protection, six snake and five amphibian species have disappeared, and remaining species-at-risk populations are thought to be in decline. We hypothesized that long-term changes in availability and distribution of critical habitat types may have contributed to the disappearance of herpetofauna. To track habitat changes we used aerial image data spanning 85 years (1931-2015) and manually digitized and classified image data using a standardized framework. Change-detection analyses were used to evaluate the relative importance of proportionate loss and fragmentation of 17 habitat types. Marsh habitat diversity and aquatic connectivity has declined since 1931. The marsh matrix transitioned from a graminoid and forb shallow marsh interspersed with water to a cattail dominated marsh, altering critical breeding, foraging, and overwintering habitat. Reduced diversity of marsh habitats appears to be linked to the expansion of invasive Phragmites australis, which invaded prior to 2000. Loss of open habitats such as savanna and meadow has reduced availability of high quality thermoregulation habitat for reptiles. Restoration of the northwestern region and tip of Point Pelee National Park to a mixed landscape of shallow wetlands (cattail, graminoid, forb, open water) and eradication of dense Phragmites stands should improve habitat diversity. Our results suggest that long-term landscape changes resulting from habitat succession and invasive species can negatively affect habitat suitability for herpetofauna and protection of land alone does not necessarily equate to protection of sensitive herpetofauna.

Shallow-water habitat use by Bering Sea flatfishes along the central Alaska Peninsula

NASA Astrophysics Data System (ADS)

Hurst, Thomas P.

2016-05-01

Flatfishes support a number of important fisheries in Alaskan waters and represent major pathways of energy flow through the ecosystem. Despite their economic and ecological importance, little is known about the use of habitat by juvenile flatfishes in the eastern Bering Sea. This study describes the habitat characteristics of juvenile flatfishes in coastal waters along the Alaska Peninsula and within the Port Moller-Herendeen Bay system, the largest marine embayment in the southern Bering Sea. The two most abundant species, northern rock sole and yellowfin sole, differed slightly in habitat use with the latter occupying slightly muddier substrates. Both were more common along the open coastline than they were within the bay, whereas juvenile Alaska plaice were more abundant within the bay than along the coast and used shallow waters with muddy, high organic content sediments. Juvenile Pacific halibut showed the greatest shift in distribution between age classes: age-0 fish were found in deeper waters (~ 30 m) along the coast, whereas older juveniles were found in the warmer, shallow waters within the bay, possibly due to increased thermal opportunities for growth in this temperature-sensitive species. Three other species, starry flounder, flathead sole, and arrowtooth flounder, were also present, but at much lower densities. In addition, the habitat use patterns of spring-spawning flatfishes (northern rock sole, Pacific halibut, and Alaska plaice) in this region appear to be strongly influenced by oceanographic processes that influence delivery of larvae to coastal habitats. Overall, use of the coastal embayment habitats appears to be less important to juvenile flatfishes in the Bering Sea than in the Gulf of Alaska.

Using a Content Management System for Integrated Water Quantity, Quality and Instream Flows Modeling

NASA Astrophysics Data System (ADS)

Burgholzer, R.; Brogan, C. O.; Scott, D.; Keys, T.

2017-12-01

With increased population and water demand, in-stream flows can become depleted by consumptive uses and dilution of permitted discharges may be compromised. Reduced flows downstream of water withdrawals may increase the violation rate of bacterial concentrations from direct deposition by livestock and wildlife. Water storage reservoirs are constructed and operated to insure more stable supplies for consumptive demands and dilution flows, however their use comes at the cost of increased evaporative losses, potential for thermal pollution, interrupted fish migration, and reduced flooding events that are critical to maintain habitat and water quality. Due to this complex interrelationship between water quantity, quality and instream habitat comprehensive multi-disciplinary models must be developed to insure long-term sustainability of water resources and to avoid conflicts between drinking water, food and energy production, and aquatic biota. The Commonwealth of Virginia funded the expansion of the Chesapeake Bay Program Phase 5 model to cover the entire state, and has been using this model to evaluate water supply permit and planning since 2009. This integrated modeling system combines a content management system (Drupal and PHP) for model input data and leverages the modularity of HSPF with the custom segmentation and parameterization routines programmed by modelers working with the Chesapeake Bay Program. The model has been applied to over 30 Virginia Water Permits, instream flows and aquatic habitat models and a Virginias 30 year water supply demand projections. Future versions will leverage the Bay Model auto-calibration routines for adding small-scale water supply and TMDL models, utilize climate change scenarios, and integrate Virginia's reservoir management modules into the Chesapeake Bay watershed model, feeding projected demand and operational changes back up to EPA models to improve the realism of future Bay-wide simulations.

Effects of natural-channel-design restoration on habitat quality in Catskill Mountain streams, New York

USGS Publications Warehouse

Ernst, Anne G.; Baldigo, Barry P.; Mulvihill, Christiane; Vian, Mark

2010-01-01

Stream restoration has received much attention in recent years, yet there has been little effort to evaluate its impacts on physical habitat, stability, and biota. A popular but controversial stream restoration approach is natural channel design (NCD), which cannot be adequately evaluated without a long-term, independent assessment of its effects on stream habitat. Six reaches of five Catskill Mountain streams in southeastern New York were restored during 2000–2003 following NCD techniques to decrease bed and bank degradation, decrease sediment loads, and improve water quality. Habitat surveys were conducted during summer low flows from 2001 to 2007. The effects of the NCD projects on stream condition were assessed via a before–after–control–impact study design to quantify the net changes in stream and bank habitat variables relative to those in unaltered control reaches. Analysis of variance tests of three different measures of bank stability show that on average stream stability increased at treatment sites for 2–5 years after restoration. Mean channel depth, thalweg depth, and the pool–riffle ratio generally increased, whereas mean channel width, percent streambank coverage by trees, and shade decreased. Habitat suitability indices for local salmonid species increased at four of six reaches after restoration. The changes in channel dimensions rendered them generally more characteristic of stabler stream forms in the given valley settings. Although these studies were done relatively soon after project completion, our findings demonstrate that habitat conditions can be improved in degraded Catskill Mountain streams through NCD restoration.

Selected aquatic biological investigations in the Great Salt Lake basins, 1875-1998, National Water-Quality Assessment Program

USGS Publications Warehouse

Giddings, Elise M.P.; Stephens, Doyle W.

1999-01-01

This report summarizes previous investigations of aquatic biological communities, habitat, and contaminants in streams and selected large lakes within the Great Salt Lake Basins study unit as part of the U.S. Geological Survey?s National Water-Quality Assessment Program (NAWQA). The Great Salt Lake Basins study unit is one of 59 such units designed to characterize water quality through the examination of chemical, physical, and biological factors in surface and ground waters across the country. The data will be used to aid in the planning, collection, and analysis of biological information for the NAWQA study unit and to aid other researchers concerned with water quality of the study unit. A total of 234 investigations conducted during 1875-1998 are summarized in this report. The studies are grouped into three major subjects: (1) aquatic communities and habitat, (2) contamination of streambed sediments and biological tissues, and (3) lakes. The location and a general description of each study is listed. The majority of the studies focus on fish and macroinvertebrate communities. Studies of algal communities, aquatic habitat, riparian wetlands, and contamination of streambed sediment or biological tissues are less common. Areas close to the major population centers of Salt Lake City, Provo, and Logan, Utah, are generally well studied, but more rural areas and much of the Bear River Basin are lacking in detailed information, except for fish populations..

Napa River Sediment TMDL Implementation and Habitat Enhancement Project

EPA Pesticide Factsheets

Information about the SFBWQP Napa River Sediment TMDL Implementation and Habitat Enhancement Project, part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

Constructing Ecological Networks Based on Habitat Quality Assessment: A Case Study of Changzhou, China

NASA Astrophysics Data System (ADS)

Gao, Yu; Ma, Lei; Liu, Jiaxun; Zhuang, Zhuzhou; Huang, Qiuhao; Li, Manchun

2017-04-01

Fragmentation and reduced continuity of habitat patches threaten the environment and biodiversity. Recently, ecological networks are increasingly attracting the attention of researchers as they provide fundamental frameworks for environmental protection. This study suggests a set of procedures to construct an ecological network. First, we proposed a method to construct a landscape resistance surface based on the assessment of habitat quality. Second, to analyze the effect of the resistance surface on corridor simulations, we used three methods to construct resistance surfaces: (1) the method proposed in this paper, (2) the entropy coefficient method, and (3) the expert scoring method. Then, we integrated habitat patches and resistance surfaces to identify potential corridors using graph theory. These procedures were tested in Changzhou, China. Comparing the outputs of using different resistance surfaces demonstrated that: (1) different landscape resistance surfaces contribute to how corridors are identified, but only slightly affect the assessment of the importance of habitat patches and potential corridors; (2) the resistance surface, which is constructed based on habitat quality, is more applicable to corridor simulations; and (3) the assessment of the importance of habitat patches is fundamental for ecological network optimization in the conservation of critical habitat patches and corridors.

Different in the dark: The effect of habitat characteristics on community composition and beta diversity in bromeliad microfauna.

PubMed

Busse, Annika; Antiqueira, Pablo A P; Neutzling, Alexandre S; Wolf, Anna M; Romero, Gustavo Q; Petermann, Jana S

2018-01-01

The mechanisms which structure communities have been the focus of a large body of research. Here, we address the question if habitat characteristics describing habitat quality may drive changes in community composition and beta diversity of bromeliad-inhabiting microfauna. In our system, changes in canopy cover along an environmental gradient may affect resource availability, disturbance in form of daily water temperature fluctuations and predation, and thus may lead to changes in community structure of bromeliad microfauna through differences in habitat quality along this gradient. Indeed, we observed distinct changes in microfauna community composition along the environmental gradient explained by changes in the extent of daily water temperature fluctuations. We found beta diversity to be higher under low habitat quality (low canopy cover) than under high habitat quality (high canopy cover), which could potentially be explained by a higher relative importance of stochastic processes under low habitat quality. We also partitioned beta diversity into turnover and nestedness components and we found a nested pattern of beta diversity along the environmental gradient, with communities from the lower-quality habitat being nested subsets of communities from the higher-quality habitat. However, this pattern resulted from an increase in microfauna alpha diversity with an increase in habitat quality. By providing insights into microfauna-environment relationships our results contribute to the mechanistic understanding of community dynamics in small freshwater bodies. Here, we highlight the importance of habitat characteristics representing habitat quality in structuring communities, and suggest that this information may help to improve conservation practices of small freshwater ecosystems.

Different in the dark: The effect of habitat characteristics on community composition and beta diversity in bromeliad microfauna

PubMed Central

Antiqueira, Pablo A. P.; Neutzling, Alexandre S.; Wolf, Anna M.; Romero, Gustavo Q.; Petermann, Jana S.

2018-01-01

The mechanisms which structure communities have been the focus of a large body of research. Here, we address the question if habitat characteristics describing habitat quality may drive changes in community composition and beta diversity of bromeliad-inhabiting microfauna. In our system, changes in canopy cover along an environmental gradient may affect resource availability, disturbance in form of daily water temperature fluctuations and predation, and thus may lead to changes in community structure of bromeliad microfauna through differences in habitat quality along this gradient. Indeed, we observed distinct changes in microfauna community composition along the environmental gradient explained by changes in the extent of daily water temperature fluctuations. We found beta diversity to be higher under low habitat quality (low canopy cover) than under high habitat quality (high canopy cover), which could potentially be explained by a higher relative importance of stochastic processes under low habitat quality. We also partitioned beta diversity into turnover and nestedness components and we found a nested pattern of beta diversity along the environmental gradient, with communities from the lower-quality habitat being nested subsets of communities from the higher-quality habitat. However, this pattern resulted from an increase in microfauna alpha diversity with an increase in habitat quality. By providing insights into microfauna-environment relationships our results contribute to the mechanistic understanding of community dynamics in small freshwater bodies. Here, we highlight the importance of habitat characteristics representing habitat quality in structuring communities, and suggest that this information may help to improve conservation practices of small freshwater ecosystems. PMID:29401522

A guide to calculating habitat-quality metrics to inform conservation of highly mobile species

USGS Publications Warehouse

Bieri, Joanna A.; Sample, Christine; Thogmartin, Wayne E.; Diffendorfer, James E.; Earl, Julia E.; Erickson, Richard A.; Federico, Paula; Flockhart, D. T. Tyler; Nicol, Sam; Semmens, Darius J.; Skraber, T.; Wiederholt, Ruscena; Mattsson, Brady J.

2018-01-01

Many metrics exist for quantifying the relative value of habitats and pathways used by highly mobile species. Properly selecting and applying such metrics requires substantial background in mathematics and understanding the relevant management arena. To address this multidimensional challenge, we demonstrate and compare three measurements of habitat quality: graph-, occupancy-, and demographic-based metrics. Each metric provides insights into system dynamics, at the expense of increasing amounts and complexity of data and models. Our descriptions and comparisons of diverse habitat-quality metrics provide means for practitioners to overcome the modeling challenges associated with management or conservation of such highly mobile species. Whereas previous guidance for applying habitat-quality metrics has been scattered in diversified tracks of literature, we have brought this information together into an approachable format including accessible descriptions and a modeling case study for a typical example that conservation professionals can adapt for their own decision contexts and focal populations.Considerations for Resource ManagersManagement objectives, proposed actions, data availability and quality, and model assumptions are all relevant considerations when applying and interpreting habitat-quality metrics.Graph-based metrics answer questions related to habitat centrality and connectivity, are suitable for populations with any movement pattern, quantify basic spatial and temporal patterns of occupancy and movement, and require the least data.Occupancy-based metrics answer questions about likelihood of persistence or colonization, are suitable for populations that undergo localized extinctions, quantify spatial and temporal patterns of occupancy and movement, and require a moderate amount of data.Demographic-based metrics answer questions about relative or absolute population size, are suitable for populations with any movement pattern, quantify demographic

Metapopulation responses to patch connectivity and quality are masked by successional habitat dynamics.

PubMed

Hodgson, Jenny A; Moilanen, Atte; Thomas, Chris D

2009-06-01

Many species have to track changes in the spatial distribution of suitable habitat from generation to generation. Understanding the dynamics of such species will likely require spatially explicit models, and patch-based metapopulation models are potentially appropriate. However, relatively little attention has been paid to developing metapopulation models that include habitat dynamics, and very little to testing the predictions of these models. We tested three predictions from theory about the differences between dynamic habitat metapopulations and their static counterparts using long-term survey data from two metapopulations of the butterfly Plebejus argus. As predicted, we showed first that the metapopulation inhabiting dynamic habitat had a lower level of habitat occupancy, which could not be accounted for by other differences between the metapopulations. Secondly, we found that patch occupancy did not significantly increase with increasing patch connectivity in dynamic habitat, whereas there was a strong positive connectivity-occupancy relationship in static habitat. Thirdly, we found no significant relationship between patch occupancy and patch quality in dynamic habitat, whereas there was a strong, positive quality-occupancy relationship in static habitat. Modeling confirmed that the differences in mean patch occupancy and connectivity-occupancy slope could arise without changing the species' metapopulation parameters-importantly, without changing the dependence of colonization upon connectivity. We found that, for a range of landscape scenarios, successional simulations always produced a lower connectivity-occupancy slope than comparable simulations with static patches, whether compared like-for-like or controlling for mean occupancy. We conclude that landscape-scale studies may often underestimate the importance of connectivity for species occurrence and persistence because habitat turnover can obscure the connectivity-occupancy relationship in commonly

Evaluation of Macroinvertebrate Communities and Habitat for Selected Stream Reaches at Los Alamos National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

L.J. Henne; K.J. Buckley

2005-08-12

This is the second aquatic biological monitoring report generated by Los Alamos National Laboratory's (LANL's) Water Quality and Hydrology Group. The study has been conducted to generate impact-based assessments of habitat and water quality for LANL waterways. The monitoring program was designed to allow for the detection of spatial and temporal trends in water and habitat quality through ongoing, biannual monitoring of habitat characteristics and benthic aquatic macroinvertebrate communities at six key sites in Los Alamos, Sandia, Water, Pajarito, and Starmer's Gulch Canyons. Data were collected on aquatic habitat characteristics, channel substrate, and macroinvertebrate communities during 2001 and 2002. Aquaticmore » habitat scores were stable between 2001 and 2002 at all locations except Starmer's Gulch and Pajarito Canyon, which had lower scores in 2002 due to low flow conditions. Channel substrate changes were most evident at the upper Los Alamos and Pajarito study reaches. The macroinvertebrate Stream Condition Index (SCI) indicated moderate to severe impairment at upper Los Alamos Canyon, slight to moderate impairment at upper Sandia Canyon, and little or no impairment at lower Sandia Canyon, Starmer's Gulch, and Pajarito Canyon. Habitat, substrate, and macroinvertebrate data from the site in upper Los Alamos Canyon indicated severe impacts from the Cerro Grande Fire of 2000. Impairment in the macroinvertebrate community at upper Sandia Canyon was probably due to effluent-dominated flow at that site. The minimal impairment SCI scores for the lower Sandia site indicated that water quality improved with distance downstream from the outfall at upper Sandia Canyon.« less

Stormwater Management Impacts on Urban Stream Water Quality and Quantity During and After Development in Clarksburg, MD

EPA Science Inventory

Urbanization and urban land use leads to degradation of local stream habitat generally termed as ‘urban stream syndrome.’ Best Management Practices (BMPs) are often used in an attempt to mitigate water quality and water quantity degradation in urban streams. Traditional developme...

The U.S. Geological Survey and City of Atlanta water-quality and water-quantity monitoring network

USGS Publications Warehouse

Horowitz, Arthur J.; Hughes, W. Brian

2006-01-01

Population growth and urbanization affect the landscape, and the quality and quantity of water in nearby rivers and streams, as well as downstream receiving waters (Ellis, 1999). Typical impacts include: (1) disruption of the hydrologic cycle through increases in the extent of impervious surfaces (e.g., roads, roofs, sidewalks) that increase the velocity and volume of surface-water runoff; (2) increased chemical loads to local and downstream receiving waters from industrial sources, nonpoint-source runoff, leaking sewer systems, and sewer overflows; (3) direct or indirect soil contamination from industrial sources, power-generating facilities, and landfills; and (4) reduction in the quantity and quality of aquatic habitats. The City of Atlanta's monitoring network consists of 21 long-term sites. Eleven of these are 'fully instrumented' to provide real-time data on water temperature, pH, specific conductance, dissolved oxygen, turbidity (intended as a surrogate for suspended sediment concentration), water level (gage height, intended as a surrogate for discharge), and precipitation. Data are transmitted hourly and are available on a public Web site (http://ga.water.usgs.gov/). Two sites only measure water level and rainfall as an aid to stormwater monitoring. The eight remaining sites are used to assess water quality.

Continuous Water Quality Monitoring in the Sacramento-San Joaquin Delta to support Ecosystem Science

NASA Astrophysics Data System (ADS)

Downing, B. D.; Bergamaschi, B. A.; Pellerin, B. A.; Saraceno, J.; Sauer, M.; Kraus, T. E.; Burau, J. R.; Fujii, R.

2013-12-01

Characterizing habitat quality and nutrient availability to food webs is an essential step for understanding and predicting the success of pelagic organisms in the Sacramento-San Joaquin Delta (Delta). The difficulty is that water quality and nutrient supply changes continuously as tidal and wind-driven currents move new water parcels to and from comparatively static geomorphic settings. Understanding interactions between nutrient cycling, suspended sediment, and plankton dynamics with flow and tidal range relative to position in the estuary is critical to predicting and managing bottom up effects on aquatic habitat in the Delta. Historically, quantifying concentrations and loads in the Delta has relied on water quality data collected at monthly intervals. Current in situ optical sensors for nutrients, dissolved organic matter (DOM) and algal pigments (chlorophyll-A, phycocyanin) allow for real-time, high-frequency measurements on time scales of seconds, and extending up to years. Such data is essential for characterizing changes in water quality over short and long term temporal scales as well as over broader spatial scales. High frequency water quality data have been collected at key stations in the Delta since 2012. Sensors that continuously measure nitrate, DOM, algal pigments and turbidity have been co-located at pre-existing Delta flow monitoring stations. Data from the stations are telemetered to USGS data servers and are designed to run autonomously with a monthly service interval, where sensors are cleaned and checked against calibration standards. The autonomous system is verified against discrete samples taken monthly and intensively over periodic ebb to flood tidal cycles. Here we present examples of how coupled optical and acoustic data from the sensor network to improve our understanding of nutrient and DOM dynamics and fluxes. The data offer robust quantitative estimates of concentrations and constituent fluxes needed to investigate biogeochemical

Water quality and algal community dynamics of three deepwater lakes in Minnesota utilizing CE-QUAL-W2 models

USGS Publications Warehouse

Smith, Erik A.; Kiesling, Richard L.; Galloway, Joel M.; Ziegeweid, Jeffrey R.

2014-01-01

Water quality, habitat, and fish in Minnesota lakes will potentially be facing substantial levels of stress in the coming decades primarily because of two stressors: (1) land-use change (urban and agricultural) and (2) climate change. Several regional and statewide lake modeling studies have identified the potential linkages between land-use and climate change on reductions in the volume of suitable lake habitat for coldwater fish populations. In recent years, water-resource scientists have been making the case for focused assessments and monitoring of sentinel systems to address how these stress agents change lakes over the long term. Currently in Minnesota, a large-scale effort called “Sustaining Lakes in a Changing Environment” is underway that includes a focus on monitoring basic watershed, water quality, habitat, and fish indicators of 24 Minnesota sentinel lakes across a gradient of ecoregions, depths, and nutrient levels. As part of this effort, the U.S. Geological Survey, in cooperation with the Minnesota Department of Natural Resources, developed predictive water quality models to assess water quality and habitat dynamics of three select deepwater lakes in Minnesota. The three lakes (Lake Carlos in Douglas County, Elk Lake in Clearwater County, and Trout Lake in Cook County) were assessed under recent (2010–11) meteorological conditions. The three selected lakes contain deep, coldwater habitats that remain viable during the summer months for coldwater fish species. Hydrodynamics and water-quality characteristics for each of the three lakes were simulated using the CE-QUAL-W2 model, which is a carbon-based, laterally averaged, two-dimensional water-quality model. The CE-QUAL-W2 models address the interaction between nutrient cycling, primary production, and trophic dynamics to predict responses in the distribution of temperature and oxygen in lakes. The CE-QUAL-W2 models for all three lakes successfully predicted water temperature, on the basis of the

Matrix quality and disturbance frequency drive evolution of species behavior at habitat boundaries.

PubMed

Martin, Amanda E; Fahrig, Lenore

2015-12-01

Previous theoretical studies suggest that a species' landscape should influence the evolution of its dispersal characteristics, because landscape structure affects the costs and benefits of dispersal. However, these studies have not considered the evolution of boundary crossing, that is, the tendency of animals to cross from habitat to nonhabitat ("matrix"). It is important to understand this dispersal behavior, because of its effects on the probability of population persistence. Boundary-crossing behavior drives the rate of interaction with matrix, and thus, it influences the rate of movement among populations and the risk of dispersal mortality. We used an individual-based, spatially explicit model to simulate the evolution of boundary crossing in response to landscape structure. Our simulations predict higher evolved probabilities of boundary crossing in landscapes with more habitat, less fragmented habitat, higher-quality matrix, and more frequent disturbances (i.e., fewer generations between local population extinction events). Unexpectedly, our simulations also suggest that matrix quality and disturbance frequency have much stronger effects on the evolution of boundary crossing than either habitat amount or habitat fragmentation. Our results suggest that boundary-crossing responses are most affected by the costs of dispersal through matrix and the benefits of escaping local extinction events. Evolution of optimal behavior at habitat boundaries in response to the landscape may have implications for species in human-altered landscapes, because this behavior may become suboptimal if the landscape changes faster than the species' evolutionary response to that change. Understanding how matrix quality and habitat disturbance drive evolution of behavior at boundaries, and how this in turn influences the extinction risk of species in human-altered landscapes should help us identify species of conservation concern and target them for management.

Relationships of field habitat measurements, visual habitat indices, and land cover to benthic macroinvertebrates in urbanized streams of the Santa Clara Valley, California

USGS Publications Warehouse

Fend, S.V.; Carter, J.L.; Kearns, F.R.

2005-01-01

We evaluated several approaches for measuring natural and anthropogenic habitat characteristics to predict benthic macroinvertebrate assemblages over a range of urban intensity at 85 stream sites in the Santa Clara Valley, California. Land cover was summarized as percentage urban land cover and impervious area within upstream buffers and the upstream subwatersheds. Field measurements characterized water chemistry, channel slope, sediment, and riparian canopy. In . addition to applying the visual-based habitat assessment in U.S. Environmental Protection Agency's rapid bioassessment protocol, we developed a simplified urban habitat assessment index based on turbidity, fine sediment deposition, riparian condition, and channel modification. Natural and anthropogenic habitat variables covaried along longitudinal stream gradients and were highly correlated with elevation. At the scale of the entire watershed, benthic macroinvertebrate measures were equally correlated with variables expressing natural gradients and urbanization effects. When natural gradients were reduced by partitioning sites into ecoregion subsection groupings, habitat variables most highly correlated with macroinvertebrate measures differed between upland and valley floor site groups. Among the valley floor sites, channel slope and physical modification of channel and riparian habitats appeared more important than upstream land cover or water quality in determining macroinvertebrate richness and ordination scores. Among upland sites, effects of upstream reservoir releases on habitat quality appeared important. Rapid habitat evaluation methods appeared to be an effective method for describing habitat features important to benthic macroinvertebrates when adapted for the region and the disturbance of interest. ?? 2005 by the American Fisheries Society.

Biotic, water-quality, and hydrologic metrics calculated for the analysis of temporal trends in National Water Quality Assessment Program Data in the Western United States

USGS Publications Warehouse

Wiele, Stephen M.; Brasher, Anne M.D.; Miller, Matthew P.; May, Jason T.; Carpenter, Kurt D.

2012-01-01

The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program was established by Congress in 1991 to collect long-term, nationally consistent information on the quality of the Nation's streams and groundwater. The NAWQA Program utilizes interdisciplinary and dynamic studies that link the chemical and physical conditions of streams (such as flow and habitat) with ecosystem health and the biologic condition of algae, aquatic invertebrates, and fish communities. This report presents metrics derived from NAWQA data and the U.S. Geological Survey streamgaging network for sampling sites in the Western United States, as well as associated chemical, habitat, and streamflow properties. The metrics characterize the conditions of algae, aquatic invertebrates, and fish. In addition, we have compiled climate records and basin characteristics related to the NAWQA sampling sites. The calculated metrics and compiled data can be used to analyze ecohydrologic trends over time.

Projected Impacts of Climate, Urbanization, Water Management, and Wetland Restoration on Waterbird Habitat in California's Central Valley.

PubMed

Matchett, Elliott L; Fleskes, Joseph P

2017-01-01

The Central Valley of California is one of the most important regions for wintering waterbirds in North America despite extensive anthropogenic landscape modification and decline of historical wetlands there. Like many other mediterranean-climate ecosystems across the globe, the Central Valley has been subject to a burgeoning human population and expansion and intensification of agricultural and urban development that have impacted wildlife habitats. Future effects of urban development, changes in water supply management, and precipitation and air temperature related to global climate change on area of waterbird habitat in the Central Valley are uncertain, yet potentially substantial. Therefore, we modeled area of waterbird habitats for 17 climate, urbanization, water supply management, and wetland restoration scenarios for years 2006-2099 using a water resources and scenario modeling framework. Planned wetland restoration largely compensated for adverse effects of climate, urbanization, and water supply management changes on habitat areas through 2065, but fell short thereafter for all except one scenario. Projected habitat reductions due to climate models were more frequent and greater than under the recent historical climate and their magnitude increased through time. After 2065, area of waterbird habitat in all scenarios that included severe warmer, drier climate was projected to be >15% less than in the "existing" landscape most years. The greatest reduction in waterbird habitat occurred in scenarios that combined warmer, drier climate and plausible water supply management options affecting priority and delivery of water available for waterbird habitats. This scenario modeling addresses the complexity and uncertainties in the Central Valley landscape, use and management of related water supplies, and climate to inform waterbird habitat conservation and other resource management planning. Results indicate that increased wetland restoration and additional

Very high resolution Earth Observation features for testing the direct and indirect effects of landscape structure on local habitat quality

NASA Astrophysics Data System (ADS)

Mairota, Paola; Cafarelli, Barbara; Labadessa, Rocco; Lovergine, Francesco P.; Tarantino, Cristina; Nagendra, Harini; Didham, Raphael K.

2015-02-01

Modelling the empirical relationships between habitat quality and species distribution patterns is the first step to understanding human impacts on biodiversity. It is important to build on this understanding to develop a broader conceptual appreciation of the influence of surrounding landscape structure on local habitat quality, across multiple spatial scales. Traditional models which report that 'habitat amount' in the landscape is sufficient to explain patterns of biodiversity, irrespective of habitat configuration or spatial variation in habitat quality at edges, implicitly treat each unit of habitat as interchangeable and ignore the high degree of interdependence between spatial components of land-use change. Here, we test the contrasting hypothesis, that local habitat units are not interchangeable in their habitat attributes, but are instead dependent on variation in surrounding habitat structure at both patch- and landscape levels. As the statistical approaches needed to implement such hierarchical causal models are observation-intensive, we utilise very high resolution (VHR) Earth Observation (EO) images to rapidly generate fine-grained measures of habitat patch internal heterogeneities over large spatial extents. We use linear mixed-effects models to test whether these remotely-sensed proxies for habitat quality were influenced by surrounding patch or landscape structure. The results demonstrate the significant influence of surrounding patch and landscape context on local habitat quality. They further indicate that such an influence can be direct, when a landscape variable alone influences the habitat structure variable, and/or indirect when the landscape and patch attributes have a conjoined effect on the response variable. We conclude that a substantial degree of interaction among spatial configuration effects is likely to be the norm in determining the ecological consequences of habitat fragmentation, thus corroborating the notion of the spatial context

Long-term habitat changes in a protected area: Implications for herpetofauna habitat management and restoration

PubMed Central

Chow-Fraser, Gillian; Chow-Fraser, Patricia

2018-01-01

Point Pelee National Park, located at the southern-most tip of Canada’s mainland, historically supported a large number of herpetofauna species; however, despite nearly a century of protection, six snake and five amphibian species have disappeared, and remaining species-at-risk populations are thought to be in decline. We hypothesized that long-term changes in availability and distribution of critical habitat types may have contributed to the disappearance of herpetofauna. To track habitat changes we used aerial image data spanning 85 years (1931–2015) and manually digitized and classified image data using a standardized framework. Change-detection analyses were used to evaluate the relative importance of proportionate loss and fragmentation of 17 habitat types. Marsh habitat diversity and aquatic connectivity has declined since 1931. The marsh matrix transitioned from a graminoid and forb shallow marsh interspersed with water to a cattail dominated marsh, altering critical breeding, foraging, and overwintering habitat. Reduced diversity of marsh habitats appears to be linked to the expansion of invasive Phragmites australis, which invaded prior to 2000. Loss of open habitats such as savanna and meadow has reduced availability of high quality thermoregulation habitat for reptiles. Restoration of the northwestern region and tip of Point Pelee National Park to a mixed landscape of shallow wetlands (cattail, graminoid, forb, open water) and eradication of dense Phragmites stands should improve habitat diversity. Our results suggest that long-term landscape changes resulting from habitat succession and invasive species can negatively affect habitat suitability for herpetofauna and protection of land alone does not necessarily equate to protection of sensitive herpetofauna. PMID:29444129

Impacts of invasive plants on songbirds: Using song structure as an indicator of habitat quality

Treesearch

Yvette Ortega

2007-01-01

Invasive species can alter habitat quality over broad scales, so they pose a severe threat to songbird populations. Through our long-term research program supported by BEMRP, we have found that changes in habitat quality induced by exotic plants like spotted knapweed can lead to subtle yet profound changes in songbird populations. For example, in knapweed-invaded...

Graphical user interface for accessing water-quality data for the Devils Lake basin, North Dakota

USGS Publications Warehouse

Ryberg, Karen R.; Damschen, William C.; Vecchia, Aldo V.

2005-01-01

Maintaining the quality of surface waters in the Devils Lake Basin in North Dakota is important for protecting the agricultural resources, fisheries, waterfowl and wildlife habitat, and recreational value of the basin. The U.S. Geological Survey, in cooperation with local, State, and Federal agencies, has collected and analyzed water-quality samples from streams and lakes in the basin since 1957, and the North Dakota Department of Health has collected and analyzed water-quality samples from lakes in the basin since 2001. Because water-quality data for the basin are important for numerous reasons, a graphical user interface was developed to access, view, and download the historical data for the basin. The interface is a web-based application that is available to the public and includes data through water year 2003. The interface will be updated periodically to include data for subsequent years.

Using Qualitative and Quantitative Methods to Choose a Habitat Quality Metric for Air Pollution Policy Evaluation

PubMed Central

Ford, Adriana E. S.; Smart, Simon M.; Henrys, Peter A.; Ashmore, Mike R.

2016-01-01

Atmospheric nitrogen (N) deposition has had detrimental effects on species composition in a range of sensitive habitats, although N deposition can also increase agricultural productivity and carbon storage, and favours a few species considered of importance for conservation. Conservation targets are multiple, and increasingly incorporate services derived from nature as well as concepts of intrinsic value. Priorities vary. How then should changes in a set of species caused by drivers such as N deposition be assessed? We used a novel combination of qualitative semi-structured interviews and quantitative ranking to elucidate the views of conservation professionals specialising in grasslands, heathlands and mires. Although conservation management goals are varied, terrestrial habitat quality is mainly assessed by these specialists on the basis of plant species, since these are readily observed. The presence and abundance of plant species that are scarce, or have important functional roles, emerged as important criteria for judging overall habitat quality. However, species defined as ‘positive indicator-species’ (not particularly scarce, but distinctive for the habitat) were considered particularly important. Scarce species are by definition not always found, and the presence of functionally important species is not a sufficient indicator of site quality. Habitat quality as assessed by the key informants was rank-correlated with the number of positive indicator-species present at a site for seven of the nine habitat classes assessed. Other metrics such as species-richness or a metric of scarcity were inconsistently or not correlated with the specialists’ assessments. We recommend that metrics of habitat quality used to assess N pollution impacts are based on the occurrence of, or habitat-suitability for, distinctive species. Metrics of this type are likely to be widely applicable for assessing habitat change in response to different drivers. The novel combined

Constructing Ecological Networks Based on Habitat Quality Assessment: A Case Study of Changzhou, China

PubMed Central

Gao, Yu; Ma, Lei; Liu, Jiaxun; Zhuang, Zhuzhou; Huang, Qiuhao; Li, Manchun

2017-01-01

Fragmentation and reduced continuity of habitat patches threaten the environment and biodiversity. Recently, ecological networks are increasingly attracting the attention of researchers as they provide fundamental frameworks for environmental protection. This study suggests a set of procedures to construct an ecological network. First, we proposed a method to construct a landscape resistance surface based on the assessment of habitat quality. Second, to analyze the effect of the resistance surface on corridor simulations, we used three methods to construct resistance surfaces: (1) the method proposed in this paper, (2) the entropy coefficient method, and (3) the expert scoring method. Then, we integrated habitat patches and resistance surfaces to identify potential corridors using graph theory. These procedures were tested in Changzhou, China. Comparing the outputs of using different resistance surfaces demonstrated that: (1) different landscape resistance surfaces contribute to how corridors are identified, but only slightly affect the assessment of the importance of habitat patches and potential corridors; (2) the resistance surface, which is constructed based on habitat quality, is more applicable to corridor simulations; and (3) the assessment of the importance of habitat patches is fundamental for ecological network optimization in the conservation of critical habitat patches and corridors. PMID:28393879

EFFECTS OF SEASONAL AND WATER QUALITY PARAMETERS ON OYSTERS (CRASSOSTREA VIRGINICA) AND ASSOCIATED FISH POPULATIONS.

EPA Science Inventory

Influence of water quality and seasonal changes on disease prevalence and intensity of Perkinsus marinus, gonadal condition, recruitment potential, growth of caged juvenile oysters, and habitat suitability of reefs for fishes and macrobenthic invertebrates were measured in Callos...

Competition and Habitat Quality Influence Age and Sex Distribution in Wintering Rusty Blackbirds

PubMed Central

Mettke-Hofmann, Claudia; Hamel, Paul B.; Hofmann, Gerhard; Zenzal Jr., Theodore J.; Pellegrini, Anne; Malpass, Jennifer; Garfinkel, Megan; Schiff, Nathan

2015-01-01

Bird habitat quality is often inferred from species abundance measures during the breeding and non-breeding season and used for conservation management decisions. However, during the non-breeding season age and sex classes often occupy different habitats which suggest a need for more habitat-specific data. Rusty Blackbird (Euphagus carolinus) is a forested wetland specialist wintering in bottomland hardwood forests in the south-eastern U. S. and belongs to the most steeply declining songbirds in the U.S. Little information is available to support priority birds such as the Rusty Blackbird wintering in this threatened habitat. We assessed age and sex distribution and body condition of Rusty Blackbirds among the three major habitats used by this species in the Lower Mississippi Alluvial Valley and also measured food availability. Overall, pecan groves had the highest biomass mainly driven by the amount of nuts. Invertebrate biomass was highest in forests but contributed only a small percentage to overall biomass. Age and sex classes were unevenly distributed among habitats with adult males primarily occupying pecan groves containing the highest nut biomass, females being found in forests which had the lowest nut biomass and young males primarily staying in forest fragments along creeks which had intermediate nut biomass. Males were in better body condition than females and were in slightly better condition in pecan groves. The results suggest that adult males occupy the highest quality habitat and may competitively exclude the other age and sex classes. PMID:25946335

Competition and habitat quality influence age and sex distribution in wintering rusty blackbirds.

PubMed

Mettke-Hofmann, Claudia; Hamel, Paul B; Hofmann, Gerhard; Zenzal, Theodore J; Pellegrini, Anne; Malpass, Jennifer; Garfinkel, Megan; Schiff, Nathan; Greenberg, Russell

2015-01-01

Bird habitat quality is often inferred from species abundance measures during the breeding and non-breeding season and used for conservation management decisions. However, during the non-breeding season age and sex classes often occupy different habitats which suggest a need for more habitat-specific data. Rusty Blackbird (Euphagus carolinus) is a forested wetland specialist wintering in bottomland hardwood forests in the south-eastern U. S. and belongs to the most steeply declining songbirds in the U.S. Little information is available to support priority birds such as the Rusty Blackbird wintering in this threatened habitat. We assessed age and sex distribution and body condition of Rusty Blackbirds among the three major habitats used by this species in the Lower Mississippi Alluvial Valley and also measured food availability. Overall, pecan groves had the highest biomass mainly driven by the amount of nuts. Invertebrate biomass was highest in forests but contributed only a small percentage to overall biomass. Age and sex classes were unevenly distributed among habitats with adult males primarily occupying pecan groves containing the highest nut biomass, females being found in forests which had the lowest nut biomass and young males primarily staying in forest fragments along creeks which had intermediate nut biomass. Males were in better body condition than females and were in slightly better condition in pecan groves. The results suggest that adult males occupy the highest quality habitat and may competitively exclude the other age and sex classes.

Pesticide concentrations in frog tissue and wetland habitats in alandscape dominated by agriculture

USGS Publications Warehouse

Smalling, Kelly L.; Reeves, Rebecca; Muths, Erin L.; Vandever, Mark W.; Battaglin, William A.; Hladik, Michelle; Pierce, Clay L.

2015-01-01

Habitat loss and exposure to pesticides are likely primary factors contributing to amphibian decline in agricultural landscapes. Conservation efforts have attempted to restore wetlands lost through landscape modifications to reduce contaminant loads in surface waters and providing quality habitat to wildlife. The benefits of this increased wetland area, perhaps especially for amphibians, may be negated if habitat quality is insufficient to support persistent populations. We examined the presence of pesticides and nutrients in water and sediment as indicators of habitat quality and assessed the bioaccumulation of pesticides in the tissue of two native amphibian species Pseudacris maculata (chorus frogs) and Lithobates pipiens (leopard frogs) at six wetlands (3 restored and 3 reference) in Iowa, USA. Restored wetlands are positioned on the landscape to receive subsurface tile drainage water while reference wetlands receive water from overland run-off and shallow groundwater sources. Concentrations of the pesticides frequently detected in water and sediment samples were not different between wetland types. The median concentration of atrazine in surface water was 0.2 μg/L. Reproductive abnormalities in leopard frogs have been observed in other studies at these concentrations. Nutrient concentrations were higher in the restored wetlands but lower than concentrations thought lethal to frogs. Complex mixtures of pesticides including up to 8 fungicides, some previously unreported in tissue, were detected with concentrations ranging from 0.08 to 1500 μg/kg wet weight. No significant differences in pesticide concentrations were observed between species, although concentrations tended to be higher in leopard frogs compared to chorus frogs, possibly because of differences in life histories. Our results provide information on habitat quality in restored wetlands that will assist state and federal agencies, landowners, and resource managers in identifying and

Measuring Habitat Quality for Deep-Sea Corals and Sponges to Add Conservation Value to Telepresence-Enabled Science and Technology

NASA Astrophysics Data System (ADS)

Etnoyer, P. J.; Hourigan, T. F.; Reser, B.; Monaco, M.

2016-02-01

The growing fleet of telepresence-enabled research vessels equipped with deep-sea imaging technology provides a new opportunity to catalyze and coordinate research efforts among ships. This development is particularly useful for studying the distribution and diversity of deep-sea corals, which occur worldwide from 50 to 8600 m depth. Marine managers around the world seek to conserve these habitats, but require a clear consensus on what types of information are most important and most relevant for marine conservation. The National Oceanic and Atmospheric Administration (NOAA) seeks to develop a reproducible, non-invasive set of ROV methods designed to measure conservation value, or habitat quality, for deep-sea corals and sponges. New tools and methods will be proposed to inform ocean resource management, as well as facilitate research, outreach, and education. A new database schema will be presented, building upon the Ocean Biogeographic Information System (OBIS) and efforts of submersible and ROV teams over the years. Visual information about corals and sponges has proven paramount, particularly high-quality images with standard attributes for marine geology and marine biology, including scientific names, colony size, health, abundance, and density. Improved habitat suitability models can be developed from these data if presence and absence are measured. Recent efforts to incorporate physical sampling into telepresence protocols further increase the value of such information. It is possible for systematic observations with small file sizes to be distributed as geo-referenced, time-stamped still images with environmental variables for water chemistry and a standardized habitat classification. The technique is common among researchers, but a distributed network for this information is still in its infancy. One goal of this presentation is to make progress towards a more integrated network of these measured observations of habitat quality to better facilitate

Coastal retreat and improved water quality mitigate losses of seagrass from sea level rise.

PubMed

Saunders, Megan I; Leon, Javier; Phinn, Stuart R; Callaghan, David P; O'Brien, Katherine R; Roelfsema, Chris M; Lovelock, Catherine E; Lyons, Mitchell B; Mumby, Peter J

2013-08-01

The distribution and abundance of seagrass ecosystems could change significantly over the coming century due to sea level rise (SLR). Coastal managers require mechanistic understanding of the processes affecting seagrass response to SLR to maximize their conservation and associated provision of ecosystem services. In Moreton Bay, Queensland, Australia, vast seagrass meadows supporting populations of sea turtles and dugongs are juxtaposed with the multiple stressors associated with a large and rapidly expanding human population. Here, the interactive effects of predicted SLR, changes in water clarity, and land use on future distributions of seagrass in Moreton Bay were quantified. A habitat distribution model of present day seagrass in relation to benthic irradiance and wave height was developed which correctly classified habitats in 83% of cases. Spatial predictions of seagrass and presence derived from the model and bathymetric data were used to initiate a SLR inundation model. Bathymetry was iteratively modified based on SLR and sedimentary accretion in seagrass to simulate potential seagrass habitat at 10 year time steps until 2100. The area of seagrass habitat was predicted to decline by 17% by 2100 under a scenario of SLR of 1.1 m. A scenario including the removal of impervious surfaces, such as roads and houses, from newly inundated regions, demonstrated that managed retreat of the shoreline could potentially reduce the overall decline in seagrass habitat to just 5%. The predicted reduction in area of seagrass habitat could be offset by an improvement in water clarity of 30%. Greater improvements in water clarity would be necessary for larger magnitudes of SLR. Management to improve water quality will provide present and future benefits to seagrasses under climate change and should be a priority for managers seeking to compensate for the effects of global change on these valuable habitats. © 2013 John Wiley & Sons Ltd.

Seasonal use of shallow water habitat in the Lower Snake River reservoirs by juvenile fall Chinook salmon

USGS Publications Warehouse

Tiffan, Kenneth F.; Connor, William P.

2012-01-01

The U.S. Army Corps of Engineers (COE) is preparing a long term management plan for sediments that affect the authorized project purposes of the Lower Granite, Little Goose, Lower Monumental, and Ice Harbor reservoirs (hereafter, the lower Snake River reservoirs), and the area from the mouth of the Snake River to Ice Harbor Dam. We conducted a study from spring 2010 through winter 2011 to describe the habitat use by juvenile Chinook salmon within a selected group of shallow water habitat complexes (< 6 m deep) in the lower Snake River reservoirs to help inform the long-term plan. Natural fry and parr were present within all four shallow water habitat complexes that we studied from early spring through early summer, and parr ( = 40,345 ± 18,800 [error bound]) were more abundant than fry ( = 24,615 ± 5,701). Water < 2 m deep was highly used for rearing by natural fall Chinook salmon subyearlings (fry and parr combined; hereafter natural subyearlings) based on duration of use and relative group abundances during spring and summer, whereas the 2–6 m depth interval was more highly used by migratory hatchery fall Chinook salmon subyearlings and spring, summer, and fall Chinook salmon yearlings. Overall mean spring-summer apparent density of natural subyearlings was 15.5 times higher within the < 2 m depth interval than within the 2–6 m depth interval. Density of natural subyearlings also decreased as the distance a given shallow water habitat complex was located from the riverine spawning areas increased. Reservoir-type juveniles (or fish likely destined to become reservoir-type juveniles) were present in the lower Snake River reservoirs from fall 2010 through winter 2011; however, use of shallow water habitat by reservoir-type juveniles was limited during our study. We only collected 38 reservoir-type juveniles in shallow water habitat sites in beach and lampara seines during the fall. Radiotelemetry data revealed that though many tagged fish passed shallow water

Effects of Surface-Water Diversions on Habitat Availability for Native Macrofauna, Northeast Maui, Hawaii

USGS Publications Warehouse

Gingerich, Stephen B.; Wolff, Reuben H.

2005-01-01

Effects of surface-water diversions on habitat availability for native stream fauna (fish, shrimp, and snails) are described for 21 streams in northeast Maui, Hawaii. Five streams (Waikamoi, Honomanu, Wailuanui, Kopiliula, and Hanawi Streams) were chosen as representative streams for intensive study. On each of the five streams, three representative reaches were selected: (1) immediately upstream of major surface-water diversions, (2) midway to the coast, and (3) near the coast. This study focused on five amphidromous native aquatic species (alamoo, nopili, nakea, opae, and hihiwai) that are abundant in the study area. The Physical Habitat Simulation (PHABSIM) System, which incorporates hydrology, stream morphology and microhabitat preferences to explore relations between streamflow and habitat availability, was used to simulate habitat/discharge relations for various species and life stages, and to provide quantitative habitat comparisons at different streamflows of interest. Hydrologic data, collected over a range of low-flow discharges, were used to calibrate hydraulic models of selected transects across the streams. The models were then used to predict water depth and velocity (expressed as a Froude number) over a range of discharges up to estimates of natural median streamflow. The biological importance of the stream hydraulic attributes was then assessed with the statistically derived suitability criteria for each native species and life stage that were developed as part of this study to produce a relation between discharge and habitat availability. The final output was expressed as a weighted habitat area of streambed for a representative stream reach. PHABSIM model results are presented to show the area of estimated usable bed habitat over a range of streamflows relative to natural conditions. In general, the models show a continuous decrease in habitat for all modeled species as streamflow is decreased from natural conditions. The PHABSIM modeling results

Managing Environmental Flows for Impounded Rivers in Semi-Arid Regions- A Habitat Suitability Index (HSI) Approach for the Assessment of River Habitat for Salmonid Populations

NASA Astrophysics Data System (ADS)

Pai, H.; Sivakumaran, K.; Villamizar, S. R.; Flanagan, J.; Guo, Q.; Harmon, T. C.

2013-12-01

Balancing ecosystem health in water-scarce, agriculturally dominated river basins remains a challenge. In dry water years, maintaining conditions for restored and sustained indigenous fish populations (a frequently used indicator for ecosystem health) is particularly challenging. Competing human demands include urban and agricultural water supplies, hydropower, and flood control. In many semi-arid regions, increasing drought intensity and frequency under future climate scenarios will combine with population increases to water scarcity. The goal of this work is to better understand how reservoir releases affect fish habitat and overall river aquatic ecosystem quality. Models integrating a diverse array of physical and biological processes and system state are used to forecast the river ecosystem response to changing drivers. We propose a distributed parameter-based Habitat Suitability Index (HSI) approach for assessing fish habitat quality. Our river ecosystem HSI maps are based on a combination of the following: (1) In situ data describing stream flow and water quality conditions; (2) Spatial observations, including surveyed cross-sections, aerial imagery and digital elevation maps (DEM) of the river and its riparian corridor; and (3) Simulated spatially distributed water depths, flow velocities, and temperatures estimated from 1D and 2D river flow and temperature models (HEC-RAS and CE-QUAL-W2, respectively). With respect to (2), image processing schemes are used to classify and map key habitat features, namely riparian edge and shallow underwater vegetation. HSI maps can be modified temporally to address specific life cycle requirements of indicator fish species. Results are presented for several reaches associated with the San Joaquin River Restoration Project, focusing on several components of the Chinook salmon life cycle. HSI maps and interpretations are presented in the context of a range of prescribed reservoir release hydrographs linked to California water

Stream Hydrology and Water Quality Impacts of Contrasting Urban Stormwater Mitigation Strategies: Centralized Versus Distributed

EPA Science Inventory

Urban land cover is commonly associated with degraded stream habitat including flashier hydrology, increased pollutant export, and lower ecological health , collectively termed “urban stream syndrome.” Pollutant export from urban areas can also contribute to water quality issues...

Environmental and economic benefits of preserving forests within urban areas: air and water quality. Chapter 4.

Treesearch

David J. Nowak; Jun Wang; Ted Endreny

2007-01-01

Forests and trees in urban areas provide many environmental and economic benefits that can lead to improved environmental quality and human health. These benefits include improvements in air and water quality, richer terrestrial and aquatic habitat, cooler air temperatures, and reductions in building energy use, ultraviolet radiation levels, and noise. As urbanization...

Evaluation of habitat quality for selected wildlife species associated with back channels.

USGS Publications Warehouse

Anderson, James T.; Zadnik, Andrew K.; Wood, Petra Bohall; Bledsoe, Kerry

2013-01-01

The islands and associated back channels on the Ohio River, USA, are believed to provide critical habitat features for several wildlife species. However, few studies have quantitatively evaluated habitat quality in these areas. Our main objective was to evaluate the habitat quality of back and main channel areas for several species using habitat suitability index (HSI) models. To test the effectiveness of these models, we attempted to relate HSI scores and the variables measured for each model with measures of relative abundance for the model species. The mean belted kingfisher (Ceryle alcyon) HSI was greater on the main than back channel. However, the model failed to predict kingfisher abundance. The mean reproduction component of the great blue heron (Ardea herodias) HSI, total common muskrat (Ondatra zibethicus) HSI, winter cover component of the snapping turtle (Chelydra serpentina) HSI, and brood-rearing component of the wood duck (Aix sponsa) HSI were all greater on the back than main channel, and were positively related with the relative abundance of each species. We found that island back channels provide characteristics not found elsewhere on the Ohio River and warrant conservation as important riparian wildlife habitat. The effectiveness of using HSI models to predict species abundance on the river was mixed. Modifications to several of the models are needed to improve their use on the Ohio River and, likely, other large rivers.

Rebuilding Habitat and Shoreline Resilience through Improved Flood Control Project

EPA Pesticide Factsheets

Information about the SFBWQP Rebuilding Habitat and Shoreline Resilience through Improved Flood Control Project, part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

Quantifying Relationships between Water Quality and Aquatic Life Use Attainment using Sediment Profile Imagery (SPI) in Pensacola Bay

EPA Science Inventory

We present results from a monthly sediment and water quality survey of nine stations along a transect in the Pensacola Bay estuary spanning the salinity gradient from Escambia River to the Gulf of Mexico. We evaluated Benthic Habitat Quality (Nilsson and Rosenberg 1997) derived f...

Wildlife habitats in managed rangelands—the Great Basin of southeastern Oregon: pronghorns.

Treesearch

Robert R. Kindschy; Charles S. Undstrom; James D. Yoakum

1982-01-01

The sagebrush steppe of the Great Basin in southeastern Oregon is peripheral habitat for pronghorns, but the quality of the habitat can be improved through rangeland management. The relationship between pronghorns and their habitat components—the availability of water, type of forage, barriers that restrict the movement of herds, and the effect of grazing by livestock-...

Identification of tire leachate toxicants and a risk assessment of water quality effects using tire reefs in canals

USGS Publications Warehouse

Nelson, S. M.; Mueller, G.; Hemphill, D. C.

1994-01-01

Cover is an important component of aquatic habitat and fisheries management. Fisheries biologists often try to improve habitats through the addition of natural and artificial material to improve cover diversity and complexity. Habitat-improvement programs range from submerging used Christmas trees to more complex programs using sophisticated artificial habitat modules. Used automobile tires have been employed in the large scale construction of reefs and fish attractors in marine environments (D'Itri 1985) and to a lesser extent in freshwater (Johnson and Stein 1979) and have been recognized as a durable, inexpensive and long-lasting material which benefits fishery communities. Recent studies by the U.S. Bureau of Reclamation (Mueller and Liston 1991) have quantified the importance of tire reeds to enhancing freshwater canal fisheries in the southwestern United States. These studies have demonstrated that fisheries and aquatic macroinvertebrates are attracted to these structures, increasing species diversity, densities and biomass where reefs are places in canals. Potential benefits to fishermen are great in the form of recreational fishing. However, the use of tire reefs in aquatic environments which have relatively small volumes compared to marine or reservoir environments has raised water quality concerns. Effects of tires on water quality have not typically been studied in the part because of the obvious presence of fishes and other aquatic organisms that make use of tire reefs; the implication being that tires are intert and non-toxic. Little information on effects of tires on water quality is contained in the literature. Stone et al. (1975) demonstrated that tire exposure had no detrimental effects on two species of marine fish while results of Kellough's (1991) freshwater tests were inconclusive, but suggested that some factor in tire leachate was toxic to rainbow trout (Oncorhynchus mykiss). Nozaka et al. (1973) found no harmful substances leached from tire

Differences in aquatic habitat quality as an impact of one- and two-dimensional hydrodynamic model simulated flow variables

NASA Astrophysics Data System (ADS)

Benjankar, R. M.; Sohrabi, M.; Tonina, D.; McKean, J. A.

2013-12-01

Aquatic habitat models utilize flow variables which may be predicted with one-dimensional (1D) or two-dimensional (2D) hydrodynamic models to simulate aquatic habitat quality. Studies focusing on the effects of hydrodynamic model dimensionality on predicted aquatic habitat quality are limited. Here we present the analysis of the impact of flow variables predicted with 1D and 2D hydrodynamic models on simulated spatial distribution of habitat quality and Weighted Usable Area (WUA) for fall-spawning Chinook salmon. Our study focuses on three river systems located in central Idaho (USA), which are a straight and pool-riffle reach (South Fork Boise River), small pool-riffle sinuous streams in a large meadow (Bear Valley Creek) and a steep-confined plane-bed stream with occasional deep forced pools (Deadwood River). We consider low and high flows in simple and complex morphologic reaches. Results show that 1D and 2D modeling approaches have effects on both the spatial distribution of the habitat and WUA for both discharge scenarios, but we did not find noticeable differences between complex and simple reaches. In general, the differences in WUA were small, but depended on stream type. Nevertheless, spatially distributed habitat quality difference is considerable in all streams. The steep-confined plane bed stream had larger differences between aquatic habitat quality defined with 1D and 2D flow models compared to results for streams with well defined macro-topographies, such as pool-riffle bed forms. KEY WORDS: one- and two-dimensional hydrodynamic models, habitat modeling, weighted usable area (WUA), hydraulic habitat suitability, high and low discharges, simple and complex reaches

Water quality

USDA-ARS?s Scientific Manuscript database

Aquatic animals are healthiest and grow best when environmental conditions are within certain ranges that define, for a particular species, “good” water quality. From the outset, successful aquaculture requires a high-quality water supply. Water quality in aquaculture systems also deteriorates as an...

Projected Impacts of Climate, Urbanization, Water Management, and Wetland Restoration on Waterbird Habitat in California’s Central Valley

PubMed Central

Fleskes, Joseph P.

2017-01-01

The Central Valley of California is one of the most important regions for wintering waterbirds in North America despite extensive anthropogenic landscape modification and decline of historical wetlands there. Like many other mediterranean-climate ecosystems across the globe, the Central Valley has been subject to a burgeoning human population and expansion and intensification of agricultural and urban development that have impacted wildlife habitats. Future effects of urban development, changes in water supply management, and precipitation and air temperature related to global climate change on area of waterbird habitat in the Central Valley are uncertain, yet potentially substantial. Therefore, we modeled area of waterbird habitats for 17 climate, urbanization, water supply management, and wetland restoration scenarios for years 2006–2099 using a water resources and scenario modeling framework. Planned wetland restoration largely compensated for adverse effects of climate, urbanization, and water supply management changes on habitat areas through 2065, but fell short thereafter for all except one scenario. Projected habitat reductions due to climate models were more frequent and greater than under the recent historical climate and their magnitude increased through time. After 2065, area of waterbird habitat in all scenarios that included severe warmer, drier climate was projected to be >15% less than in the “existing” landscape most years. The greatest reduction in waterbird habitat occurred in scenarios that combined warmer, drier climate and plausible water supply management options affecting priority and delivery of water available for waterbird habitats. This scenario modeling addresses the complexity and uncertainties in the Central Valley landscape, use and management of related water supplies, and climate to inform waterbird habitat conservation and other resource management planning. Results indicate that increased wetland restoration and additional

Projected impacts of climate, urbanization, water management, and wetland restoration on waterbird habitat in California’s Central Valley

USGS Publications Warehouse

Matchett, Elliott L.; Fleskes, Joseph

2017-01-01

The Central Valley of California is one of the most important regions for wintering waterbirds in North America despite extensive anthropogenic landscape modification and decline of historical wetlands there. Like many other mediterranean-climate ecosystems across the globe, the Central Valley has been subject to a burgeoning human population and expansion and intensification of agricultural and urban development that have impacted wildlife habitats. Future effects of urban development, changes in water supply management, and precipitation and air temperature related to global climate change on area of waterbird habitat in the Central Valley are uncertain, yet potentially substantial. Therefore, we modeled area of waterbird habitats for 17 climate, urbanization, water supply management, and wetland restoration scenarios for years 2006–2099 using a water resources and scenario modeling framework. Planned wetland restoration largely compensated for adverse effects of climate, urbanization, and water supply management changes on habitat areas through 2065, but fell short thereafter for all except one scenario. Projected habitat reductions due to climate models were more frequent and greater than under the recent historical climate and their magnitude increased through time. After 2065, area of waterbird habitat in all scenarios that included severe warmer, drier climate was projected to be >15% less than in the “existing” landscape most years. The greatest reduction in waterbird habitat occurred in scenarios that combined warmer, drier climate and plausible water supply management options affecting priority and delivery of water available for waterbird habitats. This scenario modeling addresses the complexity and uncertainties in the Central Valley landscape, use and management of related water supplies, and climate to inform waterbird habitat conservation and other resource management planning. Results indicate that increased wetland restoration and additional

A test of the substitution-habitat hypothesis in amphibians.

PubMed

Martínez-Abraín, Alejandro; Galán, Pedro

2018-06-01

Most examples that support the substitution-habitat hypothesis (human-made habitats act as substitutes of original habitat) deal with birds and mammals. We tested this hypothesis in 14 amphibians by using percentage occupancy as a proxy of habitat quality (i.e., higher occupancy percentages indicate higher quality). We classified water body types as original habitat (no or little human influence) depending on anatomical, behavioral, or physiological adaptations of each amphibian species. Ten species had relatively high probabilities (0.16-0.28) of occurrence in original habitat, moderate probability of occurrence in substitution habitats (0.11-0.14), and low probability of occurrence in refuge habitats (0.05-0.08). Thus, the substitution-habitat hypothesis only partially applies to amphibians because the low occupancy of refuges could be due to the negligible human persecution of this group (indicating good conservation status). However, low occupancy of refuges could also be due to low tolerance of refuge conditions, which could have led to selective extinction or colonization problems due to poor dispersal capabilities. That original habitats had the highest probabilities of occupancy suggests amphibians have a good conservation status in the region. They also appeared highly adaptable to anthropogenic substitution habitats. © 2017 Society for Conservation Biology.

Relationship between landscape characteristics and surface water quality.

PubMed

Chang, C L; Kuan, W H; Lui, P S; Hu, C Y

2008-12-01

The effects of landscape characteristics on surface water quality were evaluated in terms of land-use condition, soil type and slope. The case area, the Chichiawan stream in the Wulin catchment in Taiwan, is Formosan landlocked salmon's natural habitat. Due to the agriculture behavior and mankind's activities, the water and environmental quality has gradually worsened. This study applied WinVAST model to predict hydrological responses and non-point source pollution (NPSP) exports in the Wulin catchment. The land-use condition and the slope of land surface in a catchment are major effect factors for watershed responses, including flows and pollutant exports. This work discussed the possible variation of watershed responses induced by the change of land-use condition, soil type and slope, etc. The results show that hydrological responses are highly relative to the value of Curve Number (CN); Pollutant exports have large relation to the average slope of the land surface in the Wulin catchment.

Utilizing Depth of Colonization of Seagrasses to Develop Numeric Water Quality Criteria for Florida Estuaries

EPA Science Inventory

US EPA is working with state and local partners in Florida to develop numeric water quality criteria to protect estuaries from nutrient pollution. Similar to other nutrient management programs in Florida, EPA is considering status of seagrass habitats as an indicator of biologic...

Pesticide concentrations in frog tissue and wetland habitats in a landscape dominated by agriculture.

PubMed

Smalling, Kelly L; Reeves, Rebecca; Muths, Erin; Vandever, Mark; Battaglin, William A; Hladik, Michelle L; Pierce, Clay L

2015-01-01

Habitat loss and exposure to pesticides are likely primary factors contributing to amphibian decline in agricultural landscapes. Conservation efforts have attempted to restore wetlands lost through landscape modifications to reduce contaminant loads in surface waters and providing quality habitat to wildlife. The benefits of this increased wetland area, perhaps especially for amphibians, may be negated if habitat quality is insufficient to support persistent populations. We examined the presence of pesticides and nutrients in water and sediment as indicators of habitat quality and assessed the bioaccumulation of pesticides in the tissue of two native amphibian species Pseudacris maculata (chorus frogs) and Lithobates pipiens (leopard frogs) at six wetlands (3 restored and 3 reference) in Iowa, USA. Restored wetlands are positioned on the landscape to receive subsurface tile drainage water while reference wetlands receive water from overland run-off and shallow groundwater sources. Concentrations of the pesticides frequently detected in water and sediment samples were not different between wetland types. The median concentration of atrazine in surface water was 0.2 μg/L. Reproductive abnormalities in leopard frogs have been observed in other studies at these concentrations. Nutrient concentrations were higher in the restored wetlands but lower than concentrations thought lethal to frogs. Complex mixtures of pesticides including up to 8 fungicides, some previously unreported in tissue, were detected with concentrations ranging from 0.08 to 1,500 μg/kg wet weight. No significant differences in pesticide concentrations were observed between species, although concentrations tended to be higher in leopard frogs compared to chorus frogs, possibly because of differences in life histories. Our results provide information on habitat quality in restored wetlands that will assist state and federal agencies, landowners, and resource managers in identifying and implementing

Real-time water quality monitoring and providing water quality ...

EPA Pesticide Factsheets

EPA and the U.S. Geological Survey (USGS) have initiated the “Village Blue” research project to provide real-time water quality monitoring data to the Baltimore community and increase public awareness about local water quality in Baltimore Harbor and the Chesapeake Bay. The Village Blue demonstration project complements work that a number of state and local organizations are doing to make Baltimore Harbor “swimmable and fishable” 2 by 2020. Village Blue is designed to build upon EPA’s “Village Green” project which provides real-time air quality information to communities in six locations across the country. The presentation, “Real-time water quality monitoring and providing water quality information to the Baltimore Community”, summarizes the Village Blue real-time water quality monitoring project being developed for the Baltimore Harbor.

Habitat conditions of montane meadows associated with restored and unrestored stream channels of California

Treesearch

K. L. Pope; D. S. Montoya; J. N. Brownlee; J. Dierks; T. E. Lisle

2015-01-01

Mountain meadow habitats are valued for their ecological importance. They attenuate floods, improve water quality, and support high biodiversity. Many meadow habitats in the western US are degraded, and efforts are increasing to restore these montane meadow ecosystems. Rewatering projects such as pond-and-plug quickly raise the water table by blocking the existing...

Water quality assessment of Australian ports using water quality evaluation indices

PubMed Central

Jahan, Sayka

2017-01-01

Australian ports serve diverse and extensive activities, such as shipping, tourism and fisheries, which may all impact the quality of port water. In this work water quality monitoring at different ports using a range of water quality evaluation indices was applied to assess the port water quality. Seawater samples at 30 stations in the year 2016–2017 from six ports in NSW, Australia, namely Port Jackson, Botany, Kembla, Newcastle, Yamba and Eden, were investigated to determine the physicochemical and biological variables that affect the port water quality. The large datasets obtained were designed to determine the Water Quality Index, Heavy metal Evaluation Index, Contamination Index and newly developed Environmental Water Quality Index. The study revealed medium water quality index and high and medium heavy metal evaluation index at three of the study ports and high contamination index in almost all study ports. Low level dissolved oxygen and higher level of total dissolved solids, turbidity, fecal coliforms, copper, iron, lead, zinc, manganese, cadmium and cobalt are mainly responsible for the poor water qualities of the port areas. Good water quality at the background samples indicated that various port activities are the likely cause for poor water quality inside the port area. PMID:29244876

Utilization of ERTS-1 for appraising changes in continental migratory bird habitat

NASA Technical Reports Server (NTRS)

Gilmer, D. S. (Principal Investigator); Work, E. A., Jr.; Klett, A. T.

1974-01-01

The author has identified the following significant results. Information on numbers, distribution, and quality of wetlands in the breeding range of migratory waterfowl is important for the management of this wildlife resource. Using computer processing of data gathered by the ERTS-1 multispectral scanner, techniques for obtaining indices of annual waterfowl recruitment, and habitat quality are examined. As a primary task, thematic maps and statistics relating to open surface water were produced. Discrimination of water was based upon water's low apparent radiance in a single, near-infrared waveband. An advanced technique using multispectral information for discerning open water at a level of detail finer than the virtual resolution of the data was also successfully tested. In another related task, vegetation indicators were used for detecting conditions of latent or occluded water and upland habitat characteristics.

Habitat use by a Midwestern U.S.A. riverine fish assemblage: effects of season, water temperature and river discharge

USGS Publications Warehouse

Gillette, D.P.; Tiemann, J.S.; Edds, D.R.; Wildhaber, M.L.

2006-01-01

The hypothesis that temperate stream fishes alter habitat use in response to changing water temperature and stream discharge was evaluated over a 1 year period in the Neosho River, Kansas, U.S.A. at two spatial scales. Winter patterns differed from those of all other seasons, with shallower water used less frequently, and low-flow habitat more frequently, than at other times. Non-random habitat use was more frequent at the point scale (4.5 m2) than at the larger reach scale (20-40 m), although patterns at both scales were similar. Relative to available habitats, assemblages used shallower, swifter-flowing water as temperature increased, and shallower, slower-flowing water as river discharge increased. River discharge had a stronger effect on assemblage habitat use than water temperature. Proportion of juveniles in the assemblage did not have a significant effect. This study suggests that many riverine fishes shift habitats in response to changing environmental conditions, and supports, at the assemblage level, the paradigm of lotic fishes switching from shallower, high-velocity habitats in summer to deeper, low-velocity habitats in winter, and of using shallower, low-velocity habitats during periods of high discharge. Results also indicate that different species within temperate river fish assemblages show similar habitat use patterns at multiple scales in response to environmental gradients, but that non-random use of available habitats is more frequent at small scales. ?? 2006 The Fisheries Society of the British Isles.

Data Collection and Simulation of Ecological Habitat and Recreational Habitat in the Shenandoah River, Virginia

USGS Publications Warehouse

Krstolic, Jennifer L.

2015-01-01

Time-series analyses were used to investigate changes in habitat availability with increased water withdrawals of 10, 20, and almost 50 percent (48.6 percent) up to the 2040 amounts projected by local water supply plans. Adult and sub-adult smallmouth bass frequently had habitat availability outside the normal range for habitat conditions during drought years, yet 10- or 20-percent increases in withdrawals did not contribute to a large reduction in habitat. When withdrawals were increased by 50 percent, there was an additional decrease in habitat. During 2002 drought scenarios, reduced habitat availability for sub-adult redbreast sunfish or river chub was only slightly evident with 50-percent increased withdrawal scenarios. Recreational habitat represented by canoeing decreased lower than normal during the 2002 drought. For a recent normal year, like 2012, increased water-withdrawal scenarios did not affect habitat availability for fish such as adult and sub-adult smallmouth bass, sub-adult redbreast sunfish, or river chub. Canoeing habitat availability was within the normal range most of 2012, and increased water-withdrawal scenarios showed almost no affect. For both ecological fish habitat and recreational canoeing habitat, the antecedent conditions (habitat within normal range of habitat or below normal) appear to govern whether additional water withdrawals will affect habitat availability. As human populations and water demands increase, many of the ecological or recreational stresses may be lessened by managing the timing of water withdrawals from the system.

Behavioural cues surpass habitat factors in explaining prebreeding resource selection by a migratory diving duck

USGS Publications Warehouse

O'Neil, Shawn T.; Warren, Jeffrey M.; Takekawa, John Y.; De La Cruz, Susan E. W.; Cutting, Kyle A.; Parker, Michael W.; Yee, Julie L.

2014-01-01

Prebreeding habitat selection in birds can often be explained in part by habitat characteristics. However, females may also select habitats on the basis of fidelity to areas of previous reproductive success or use by conspecifics. The relative influences of sociobehavioural attributes versus habitat characteristics in habitat selection has been primarily investigated in songbirds, while less is known about how these factors affect habitat selection processes in migratory waterfowl. Animal resource selection models often exhibit much unexplained variation; spatial patterns driven by social and behavioural characteristics may account for some of this. We radiomarked female lesser scaup, Aythya affinis, in the southwestern extent of their breeding range to explore hypotheses regarding relative roles of habitat quality, site fidelity and conspecific density in prebreeding habitat selection. We used linear mixed-effects models to relate intensity of use within female home ranges to habitat features, distance to areas of reproductive success during the previous breeding season and conspecific density. Home range habitats included shallow water (≤118 cm), moderate to high densities of flooded emergent vegetation/open water edge and open water areas with submerged aquatic vegetation. Compared with habitat features, conspecific female density and proximity to successful nesting habitats from the previous breeding season had greater influences on habitat use within home ranges. Fidelity and conspecific attraction are behavioural characteristics in some waterfowl species that may exert a greater influence than habitat features in influencing prebreeding space use and habitat selection within home ranges, particularly where quality habitat is abundant. These processes may be of critical importance to a better understanding of habitat selection in breeding birds.

Remote sensing of water quality and contaminants in the California Bay-Delta

NASA Astrophysics Data System (ADS)

Fichot, C. G.; Downing, B. D.; Windham-Myers, L.; Marvin-DiPasquale, M. C.; Bergamaschi, B. A.; Thompson, D. R.; Gierach, M. M.

2014-12-01

The California Bay-Delta is a highly altered ecosystem largely reclaimed from wetlands for agriculture, and millions of acres of farmland and Californians rely on the Bay-Delta for their water supply. The Bay-Delta also harbors important habitats for many organisms, including commercial and endangered species. Recently, the Delta Stewardship Council developed a two component mission (coequal goals) to 1) provide a more reliable water supply for California while 2) protecting, restoring, and enhancing the Bay-Delta ecosystem. Dissolved organic carbon, turbidity, and contaminants such as methylmercury represent important water quality issues for water management and in the context of wetland restoration in the Bay-Delta, and can threaten the achievement of the coequal goals. Here, we use field measurements of optical properties, chemical analyses, and remotely sensed data acquired with the airborne Portable Remote Imaging SpectroMeter (PRISM ; http://prism.jpl.nasa.gov/index.html) to demonstrate these water quality parameters and the study of their dynamics in the Bay-Delta are amenable to remote sensing. PRISM provides high signal-to-noise, high spatial resolution (~2 m), hyperspectral measurements of remote-sensing reflectance in the 350-1050 nm range, and therefore has the adequate resolutions for water quality monitoring in inland, optically complex waters. Remote sensing of water quality will represent a valuable complement to existing in situ water quality monitoring programs in this region and will help with decision-making to achieve the co-equal goals.

Chinook salmon use of spawning patches: Relative roles of habitat quality, size, and connectivity

Treesearch

Daniel J. Isaak; Russell F. Thurow; Bruce E. Rieman; Jason B. Dunham

2007-01-01

Declines in many native fish populations have led to reassessments of management goals and shifted priorities from consumptive uses to species preservation. As management has shifted, relevant environmental characteristics have evolved from traditional metrics that described local habitat quality to characterizations of habitat size and connectivity. Despite the...

White sturgeon spawning and rearing habitat in the lower Columbia River

USGS Publications Warehouse

Parsley, Michael J.; Beckman, Lance G.

1994-01-01

Estimates of spawning habitat for white sturgeons Acipenser transmontanus in the tailraces of the four dams on the lower 470 km of the Columbia River were obtained by using the Physical Habitat Simulation System of the U.S. Fish and Wildlife Service's Instream Flow Incremental Methodology to identify areas with suitable water depths, water velocities, and substrates. Rearing habitat throughout the lower Columbia River was assessed by using a geographic information system to identify areas with suitable water depths and substrates. The lowering of spring and summer river discharges from hydropower system operation reduces the availability of spawning habitat for white sturgeons. The four dam tailraces in the study area differ in the amount and quality of spawning habitat available at various discharges; the differences are due to channel morphology. The three impoundments and the free-flowing Columbia River downstream from Bonneville Dam provide extensive areas that are physically suitable for rearing young-of-the-year and juvenile white sturgeons.

Historical assessments and comparisons of benthic communities and physical habitat in two agricultural streams in California's San Joaquin watershed.

PubMed

Hall, Lenwood W; Killen, William D

2006-01-01

This study was designed to assess trends in physical habitat and benthic communities (macroinvertebrates) annually in two agricultural streams (Del Puerto Creek and Salt Slough) in California's San Joaquin Valley from 2001 to 2005, determine the relationship between benthic communities and both water quality and physical habitat from both streams over the 5-year period, and compare benthic communities and physical habitat in both streams from 2001 to 2005. Physical habitat, measured with 10 metrics and a total score, was reported to be fairly stable over 5 years in Del Puerto Creek but somewhat variable in Salt Slough. Benthic communities, measured with 18 metrics, were reported to be marginally variable over time in Del Puerto Creek but fairly stable in Salt Slough. Rank correlation analysis for both water bodies combined showed that channel alteration, embeddedness, riparian buffer, and velocity/depth/diversity were the most important physical habitat metrics influencing the various benthic metrics. Correlations of water quality parameters and benthic community metrics for both water bodies combined showed that turbidity, dissolved oxygen, and conductivity were the most important water quality parameters influencing the different benthic metrics. A comparison of physical habitat metrics (including total score) for both water bodies over the 5-year period showed that habitat metrics were more positive in Del Puerto Creek when compared to Salt Slough. A comparison of benthic metrics in both water bodies showed that approximately one-third of the metrics were significantly different between the two water bodies. Generally, the more positive benthic metric scores were reported in Del Puerto Creek, which suggests that the communities in this creek are more robust than Salt Slough.

Chemical quality of water and bottom sediment, Stillwater National Wildlife Refuge, Lahontan Valley, Nevada

USGS Publications Warehouse

Thodal, Carl E.

2017-12-28

The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service collected data on water and bottom-sediment chemistry to be used to evaluate a new water rights acquisition program designed to enhance wetland habitat in Stillwater National Wildlife Refuge and in Lahontan Valley, Churchill County, Nevada. The area supports habitat critical to the feeding and resting of migratory birds travelling the Pacific Flyway. Information about how water rights acquisitions may affect the quality of water delivered to the wetlands is needed by stakeholders and Stillwater National Wildlife Refuge managers in order to evaluate the effectiveness of this approach to wetlands management. A network of six sites on waterways that deliver the majority of water to Refuge wetlands was established to monitor the quality of streamflow and bottom sediment. Each site was visited every 4 to 6 weeks and selected water-quality field parameters were measured when flowing water was present. Water samples were collected at varying frequencies and analyzed for major ions, silica, and organic carbon, and for selected species of nitrogen and phosphorus, trace elements, pharmaceuticals, and other trace organic compounds. Bottom-sediment samples were collected for analysis of selected trace elements.Dissolved-solids concentrations exceeded the recommended criterion for protection of aquatic life (500 milligrams per liter) in 33 of 62 filtered water samples. The maximum arsenic criterion (340 micrograms per liter) was exceeded twice and the continuous criterion was exceeded seven times. Criteria protecting aquatic life from continuous exposure to aluminum, cadmium, lead, and mercury (87, 0.72, 2.5, and 0.77 micrograms per liter, respectively) were exceeded only once in filtered samples (27, 40, 32, and 36 samples, respectively). Mercury was the only trace element analyzed in bottom-sediment samples to exceed the published probable effect concentration (1,060 micrograms per kilogram).

Data Delivery and Mapping Over the Web: National Water-Quality Assessment Data Warehouse

USGS Publications Warehouse

Bell, Richard W.; Williamson, Alex K.

2006-01-01

The U.S. Geological Survey began its National Water-Quality Assessment (NAWQA) Program in 1991, systematically collecting chemical, biological, and physical water-quality data from study units (basins) across the Nation. In 1999, the NAWQA Program developed a data warehouse to better facilitate national and regional analysis of data from 36 study units started in 1991 and 1994. Data from 15 study units started in 1997 were added to the warehouse in 2001. The warehouse currently contains and links the following data: -- Chemical concentrations in water, sediment, and aquatic-organism tissues and related quality-control data from the USGS National Water Information System (NWIS), -- Biological data for stream-habitat and ecological-community data on fish, algae, and benthic invertebrates, -- Site, well, and basin information associated with thousands of descriptive variables derived from spatial analysis, like land use, soil, and population density, and -- Daily streamflow and temperature information from NWIS for selected sampling sites.

Effects of Military activity and habitat quality on DNA damage and oxidative stress in the largest population of the Federally threatened gopher tortoise.

PubMed

Theodorakis, Christopher W; Adams, S Marshall; Smith, Chandra; Rotter, Jamie; Hay, Ashley; Eslick, Joy

2017-12-01

Department of Defense lands are essential for providing important habitat for threatened, endangered, and at-risk species (TER-S). However, there is little information on the effects of military-related contaminants on TER-S on these lands in field situations. Thus, this study examined genotoxicity and oxidative stress in gopher tortoises (Gopherus polyphemus) on Camp Shelby, MS-the largest known population of this species, which is listed as an "endangered species" in Mississippi and a "threatened species" by the U.S. government. Blood was collected from tortoises at 19 different sites on the base with different levels of habitat quality (high-quality and low-quality habitat) and military activity (high, low, and no military activity). Oxidative stress was quantified as lipid peroxidation and GSSG/GSH ratios, while DNA damage was determined using flow cytometry. Our results suggest that: (1) for tortoises residing in low-quality habitats, oxidative stress and DNA damage increased with increasing military activity, while in high-quality habitats, oxidative stress and DNA damage decreased with increasing military activity; (2) in the absence of military activity, tortoises in high-quality habitat had higher levels of oxidative stress and DNA damage than those in low-quality habitat, and (3) there were interactions between military activity, habitat quality, and landuse in terms of the amount of observable DNA damage and oxidative stress. In particular, on high-quality habitat, tortoises from areas with high levels of military activity had lower levels of oxidative stress and DNA damage biomarkers than on reference sites. This may represent a compensatory or hormetic response. Conversely, on low-quality habitats, the level of oxidative stress and DNA damage was lower on the reference sites. Thus, tortoises on higher-quality habitats may have a greater capacity for compensatory responses. In terms of management implications, it is suggested that low quality habitats

Foraging habitat for shorebirds in southeastern Missouri and its predicted future availability

USGS Publications Warehouse

Twedt, Daniel J.

2013-01-01

Water management to protect agriculture in alluvial floodplains often conflicts with wildlife use of seasonal floodwater. Such is the case along the Mississippi River in southeastern Missouri where migrating shorebirds forage in shallow-flooded fields. I estimated the current availability of habitat for foraging shorebirds within the New Madrid and St. Johns Basins based on daily river elevations (1943–2009), under assumptions that shorebirds forage in open habitat with water depth <15 cm and use mudflats for 3 days after exposure. The area of shorebird foraging habitat, based on replicated 50-year random samples, averaged 975 ha per day during spring and 33 ha per day during fall. Adjustments to account for habitat quality associated with different water depths, duration of mudflat exposure, intra-seasonal availability, and state of agricultural crops, indicated the equivalent of 494 ha daily of optimal habitat during spring and 11 ha during fall. Proposed levees and pumps to protect cropland would reduce shorebird foraging habitat by 80 %: to 211 ha (108 optimal ha) per day during spring and 9 ha (<3 optimal ha) per day during fall. Alternative water management that allows natural flooding below a prescribed elevation would retain nearly all existing shorebird foraging habitat during fall and about 60 % of extant habitat during spring.

Disentangling natural and anthropogenic influences on Patagonian pond water quality.

PubMed

Epele, Luis B; Manzo, Luz M; Grech, Marta G; Macchi, Pablo; Claverie, Alfredo Ñ; Lagomarsino, Leonardo; Miserendino, M Laura

2018-02-01

The water quality of wetlands is governed not only by natural variability in hydrology and other factors, but also by anthropogenic activities. Patagonia is a vast sparsely-populated in which ponds are a key component of rural and urban landscapes because they provide several ecosystem services such as habitat for wildlife and watering for livestock. Integrating field-based and geospatial data of 109 ponds sampled across the region, we identified spatial trends and assessed the effects of anthropogenic and natural factors in pond water quality. The studied ponds were generally shallow, well oxygenated, with maximum nutrient values reported in sites used for livestock breeding. TN:TP ratio values were lower than 14 in >90% of the ponds, indicating nitrogen limitation. Water conductivity decreased from de east to the west, meanwhile pH and dissolved oxygen varied associated with the latitude. To assess Patagonian ponds water status we recommend the measure of total suspended solids and total nitrogen in the water, and evaluate the mallín (wetland vegetation) coverage in a 100m radius from the pond, since those features were significantly influenced by livestock land use. To evaluate the relative importance of natural variability and anthropogenic influences as driving factors of water quality we performed three generalized linear models (GLM) that encompassed the hydrology, hydroperiod and biome (to represent natural influences), and land use (to represent anthropogenic influences) as fixed effects. Our results revealed that at the Patagonian scale, ponds water quality would be strongly dependent on natural gradients. We synthetized spatial patterns of Patagonian pond water quality, and disentangled natural and anthropic factors finding that the dominant environmental influence is rainfall gradient. Copyright © 2017 Elsevier B.V. All rights reserved.

Sampling uncharted waters: Examining rearing habitat of larval Longfin Smelt (Spirinchus thaleichthys) in the upper San Francisco Estuary

USGS Publications Warehouse

Grimaldo, Lenny; Feyrer, Frederick; Burns, Jillian; Maniscalco, Donna

2017-01-01

The southern-most reproducing Longfin Smelt population occurs in the San Francisco Estuary, California, USA. Long-term monitoring of estuarine habitat for this species has generally only considered deep channels, with little known of the role shallow waters play in supporting their early life stage. To address the need for focused research on shallow-water habitat, a targeted study of Longfin Smelt larvae in littoral habitat was conducted to identify potential rearing habitats during 2013 and 2014. Our study objectives were to (1) determine if larval densities vary between littoral habitats (tidal slough vs. open-water shoal), (2) determine how larval densities in littoral habitats vary with physicochemical and biological attributes, (3) determine if larval densities vary between littoral habitats and long-term monitoring channel collections, and (4) determine what factors predict larval rearing distributions from the long-term monitoring channel collections. Larval densities did not vary between littoral habitats but they did vary between years. Water temperature, salinity, and chlorophyll a were found important in predicting larval densities in littoral habitats. Larval densities do not vary between littoral and channel surveys; however, the analysis based on channel data suggests that Longfin Smelt are hatching and rearing in a much broader region and under higher salinities (∼2–12 psu) than previously recognized. Results of this study indicate that conservation efforts should consider how freshwater flow, habitat, climate, and food webs interact as mechanisms that influence Longfin Smelt recruitment in estuarine environments.

Putting density back into the habitat-quality equation: case study of an open-nesting forest bird.

PubMed

Pérot, Aurore; Villard, Marc-André

2009-12-01

Ecological traps and other cases of apparently maladaptive habitat selection cast doubt on the relevance of density as an indicator of habitat quality. Nevertheless, the prevalence of these phenomena remains poorly known, and density may still reflect habitat quality in most systems. We examined the relationship between density and two other parameters of habitat quality in an open-nesting passerine species: the Ovenbird (Seiurus aurocapilla). We hypothesized that the average individual bird makes a good decision when selecting its breeding territory and that territory spacing reflects site productivity or predation risk. Therefore, we predicted that density would be positively correlated with productivity (number of young fledged per unit area). Because individual performance is sensitive to events partly determined by chance, such as nest predation, we further predicted density would be weakly correlated or uncorrelated with the proportion of territories fledging young. We collected data in 23 study sites (25 ha each), 16 of which were located in untreated mature northern hardwood forest and seven in stands partially harvested (treated) 1-7 years prior to the survey. Density explained most of the variability in productivity (R(2)= 0.73), and there was no apparent decoupling between density and productivity in treated plots. In contrast, there was no significant relationship between density and the proportion of territories fledging >or=1 young over the entire breeding season. These results suggest that density reflects habitat quality at the plot scale in this study system. To our knowledge this is one of the few studies testing the value of territory density as an indicator of habitat quality in an open-nesting bird species on the basis of a relatively large number of sizeable study plots.

WATER QUALITY AND BIOLOGICAL CONDITIONS OF GREAT LAKES COASTAL WETLANDS, WITH AN EMPHASIS ON LAKE SUPERIOR

EPA Science Inventory

This presentation will focus on MED's past and ongoing research in Lake Superior wetlands, and will include data on habitat, water quality, and biological condition of these systems. Comparisons of the condition of Lake Superior wetlands relative to those found around the Great ...

Evaluating the accotink creek restoration project for improving water quality, in-stream habitat, and bank stability

USGS Publications Warehouse

Struck, S.D.; Selvakumar, A.; Hyer, K.; O'Connor, T.

2007-01-01

Increased urbanization results in a larger percentage of connected impervious areas and can contribute large quantities of stormwater runoff and significant quantities of debris and pollutants (e.g., litter, oils, microorganisms, sediments, nutrients, organic matter, and heavy metals) to receiving waters. To improve water quality in urban and suburban areas, watershed managers often incorporate best management practices (BMPs) to reduce the quantity of runoff as well as to minimize pollutants and other stressors contained in stormwater runoff. It is well known that land-use practices directly impact urban streams. Stream flows in urbanized watersheds increase in magnitude as a function of impervious area and can result in degradation of the natural stream channel morphology affecting the physical, chemical, and biological integrity of the stream. Stream bank erosion, which also increases with increased stream flows, can lead to bank instability, property loss, infrastructure damage, and increased sediment loading to the stream. Increased sediment loads may lead to water quality degradation downstream and have negative impacts on fish, benthic invertebrates, and other aquatic life. Accotink Creek is in the greater Chesapeake Bay and Potomac watersheds, which have strict sediment criteria. The USEPA (United States Environmental Protection Agency) and USGS (United States Geological Survey) are investigating the effectiveness of stream restoration techniques as a BMP to decrease sediment load and improve bank stability, biological integrity, and in-stream water quality in an impaired urban watershed in Fairfax, Virginia. This multi-year project continuously monitors turbidity, specific conductance, pH, and water temperature, as well as biological and chemical water quality parameters. In addition, physical parameters (e.g., pebble counts, longitudinal and cross sectional stream surveys) were measured to assess geomorphic changes associated with the restoration. Data

Using Video to Communicate Scientific Findings -- Habitat Connections in Urban Streams

NASA Astrophysics Data System (ADS)

Harned, D. A.; Moorman, M.; Fitzpatrick, F. A.; McMahon, G.

2011-12-01

The U.S Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) provides information about (1) water-quality conditions and how those conditions vary locally, regionally, and nationally, (2) water-quality trends, and (3) factors that affect those conditions. As part of the NAWQA Program, the Effects of Urbanization on Stream Ecosystems (EUSE) study examined the vulnerability and resilience of streams to urbanization. Completion of the EUSE study has resulted in over 20 scientific publications. Video podcasts are being used in addition to these publications to communicate the relevance of these scientific findings to more general audiences such as resource managers, educational groups, public officials, and the general public. An example of one of the podcasts is a film examining effects of urbanization on stream habitat. "Habitat Connections in Urban Streams" explores how urbanization changes some of the physical features that provide in-stream habitat and examines examples of stream restoration projects designed to improve stream form and function. The "connections" theme is emphasized, including the connection of in-stream habitats from the headwaters to the stream mouth; connections between stream habitat and the surrounding floodplains, wetlands and basin; and connections between streams and people-- resource managers, public officials, scientists, and the general public. Examples of innovative stream restoration projects in Baltimore Maryland; Milwaukee, Wisconsin; and Portland Oregon are shown with interviews of managers, engineers, scientists, and others describing the projects. The film is combined with a website with links to extended film versions of the stream-restoration project interviews. The website and films are an example of USGS efforts aimed at improving science communication to a general audience. The film is available for access from the EUSE website: http://water.usgs.gov/nawqa/urban/html/podcasts.html. Additional films are

Shallow Water Habitat Mapping in Cape Cod National Seashore: A Post-Hurricane Sandy Study

NASA Astrophysics Data System (ADS)

Borrelli, M.; Smith, T.; Legare, B.; Mittermayr, A.

2017-12-01

Hurricane Sandy had a dramatic impact along coastal areas in proximity to landfall in late October 2012, and those impacts have been well-documented in terrestrial coastal settings. However, due to the lack of data on submerged marine habitats, similar subtidal impact studies have been limited. This study, one of four contemporaneous studies commissioned by the US National Park Service, developed maps of submerged shallow water marine habitats in and around Cape Cod National Seashore, Massachusetts. All four studies used similar methods of data collection, processing and analysis for the production of habitat maps. One of the motivations for the larger study conducted in the four coastal parks was to provide park managers with a baseline inventory of submerged marine habitats, against which to measure change after future storm events and other natural and anthropogenic phenomena. In this study data from a phase-measuring sidescan sonar, bottom grab samples, seismic reflection profiling, and sediment coring were all used to develop submerged marine habitat maps using the Coastal and Marine Ecological Classification Standard (CMECS). Vessel-based acoustic surveys (n = 76) were conducted in extreme shallow water across four embayments from 2014-2016. Sidescan sonar imagery covering 83.37 km2 was collected, and within that area, 49.53 km2 of co-located bathymetric data were collected with a mean depth of 4.00 m. Bottom grab samples (n = 476) to sample macroinvertebrates and sediments (along with other water column and habitat data) were collected, and these data were used along with the geophysical and coring data to develop final habitat maps using the CMECS framework.

Results of the Level-1 Water-Quality Inventory at the Pinnacles National Monument, June 2006

USGS Publications Warehouse

Borchers, James W.; Lyttge, Michael S.

2007-01-01

To help define baseline water quality of key water resources at Pinnacles National Monument, California, the U.S. Geological Survey collected and analyzed ground water from seven springs sampled during June 2006. During the dry season, seeps and springs are the primary source of water for wildlife in the monument and provide habitat for plants, amphibians, and aquatic life. Water samples were analyzed for dissolved concentrations of major ions, trace elements, nutrients, stable isotopes of hydrogen and oxygen, and tritium. In most cases, the concentrations of measured water-quality constituents in spring samples were lower than California threshold standards for drinking water and Federal threshold standards for drinking water and aquatic life. The concentrations of dissolved arsenic in three springs were above the Federal Maximum Contaminant Level for drinking water (10 g/L). Water-quality information for samples collected from the springs will provide a reference point for comparison of samples collected from future monitoring networks and hydrologic studies in the Pinnacles National Monument, and will help National Park Service managers assess relations between water chemistry, geology, and land use.

Developmental plasticity of shell morphology of quagga mussels from shallow and deep-water habitats of the Great Lakes

Treesearch

Suzanne Peyer; John C. Hermanson; Carol Eunmi Lee

2010-01-01

The invasive zebra mussel (Dreissena polymorpha) has quickly colonized shallow-water habitats in the North American Great Lakes since the 1980s but the quagga mussel (Dreissena bugensis) is becoming dominant in both shallow and deep-water habitats. While quagga mussel shell morphology differs between shallow and deep habitats, functional causes and consequences of such...

Longitudinal patterns of fish assemblages, aquatic habitat, and water temperature in the Lower Crooked River, Oregon

USGS Publications Warehouse

Torgersen, Christian E.; Hockman-Wert, David P.; Bateman, Douglas S.; Leer, David W.; Gresswell, Robert E.

2007-01-01

The goal of this project was to examine longitudinal patterns in fish assemblages, aquatic habitat, and water temperature in the Lower Crooked River during summer conditions. Specific objectives were to (1) characterize the spatial distribution of native and non-native fishes, (2) describe variation in channel morphology, substrate composition, and water temperature, and (3) evaluate the associations between fishes, aquatic habitat, and water temperature.

Backwater control on riffle pool hydraulics, fish habitat quality, and sediment transport regime in gravel-bed rivers

NASA Astrophysics Data System (ADS)

Pasternack, Gregory B.; Bounrisavong, Michael K.; Parikh, Kaushal K.

2008-07-01

SummaryThe importance of channel non-uniformity to natural hydrogeomorphic and ecological processes in gravel-bed rivers is becoming increasingly known, but its use in channel rehabilitation lags behind. Many projects still use methods that assume steady, uniform flow and simple channel geometries. One aspect of channel non-uniformity that has not been considered much is its role in controlling backwater conditions and thus potentially influencing patterns of physical habitat and channel stability in sequences of riffles and pools. In this study, 2D hydrodynamic models of two non-uniform pool-riffle-pool configurations were used to systematically explore the effects of four different downstream water surface elevations at three different discharges (24 total simulations) on riffle-pool ecohydraulics. Downstream water surface elevations tested included backwater, uniform, accelerating, and critical conditions, which are naturally set by downstream riffle-crest morphology but may also be re-engineered artificially. Discharges included a fish-spawning low flow, summer fish-attraction flow, and a peak snowmelt pulse. It was found that the occurrence of a significant area of high-quality fish spawning habitat at low flow depends on riffles being imposed upon by backwater conditions, which also delay the onset of full bed mobility on riffles during floods. The assumption of steady, uniform flow was found to be inappropriate for gravel-bed rivers, since their non-uniformity controls spatial patterns of habitat and sediment transport. Also, model results indicated that a "reverse domino" mechanism can explain catastrophic failure and re-organization of a sequence of riffles based on the water surface elevation response to scour on downstream riffles, which then increases scour on upstream riffles.

Application of Hyperspectral Remote Sensing Techniques to Evaluate Water Quality in Turbid Coastal Waters of South Carolina.

NASA Astrophysics Data System (ADS)

Ali, K. A.; Ryan, K.

2014-12-01

Coastal and inland waters represent a diverse set of resources that support natural habitat and provide valuable ecosystem services to the human population. Conventional techniques to monitor water quality using in situ sensors and laboratory analysis of water samples can be very time- and cost-intensive. Alternatively, remote sensing techniques offer better spatial coverage and temporal resolution to accurately characterize the dynamic and unique water quality parameters. Existing remote sensing ocean color products, such as the water quality proxy chlorophyll-a, are based on ocean derived bio-optical models that are primarily calibrated in Case 1 type waters. These traditional models fail to work when applied in turbid (Case 2 type), coastal waters due to spectral interference from other associated color producing agents such as colored dissolved organic matter and suspended sediments. In this work, we introduce a novel technique for the predictive modeling of chlorophyll-a using a multivariate-based approach applied to in situ hyperspectral radiometric data collected from the coastal waters of Long Bay, South Carolina. This method uses a partial least-squares regression model to identify prominent wavelengths that are more sensitive to chlorophyll-a relative to other associated color-producing agents. The new model was able to explain 80% of the observed chlorophyll-a variability in Long Bay with RMSE = 2.03 μg/L. This approach capitalizes on the spectral advantage gained from current and future hyperspectral sensors, thus providing a more robust predicting model. This enhanced mode of water quality monitoring in marine environments will provide insight to point-sources and problem areas that may contribute to a decline in water quality. The utility of this tool is in its versatility to a diverse set of coastal waters and its use by coastal and fisheries managers with regard to recreation, regulation, economic and public health purposes.

What happens to near-shore habitat when lake and reservoir water levels decline?

EPA Science Inventory

Water management and drought can lead to increased fluctuation and declines in lake and reservoir water levels. These changes can affect near-shore physical habitat and the biotic assemblages that depend upon it. Structural complexity at the land-water interface of lakes promote...

Derivation of habitat-specific dissolved oxygen criteria for Chesapeake Bay and its tidal tributaries

USGS Publications Warehouse

Batiuk, Richard A.; Breitburg, Denise L.; Diaz, Robert J.; Cronin, Thomas M.; Secor, David H.; Thursby, Glen

2009-01-01

The Chesapeake 2000 Agreement committed its state and federal signatories to “define the water quality conditions necessary to protect aquatic living resources” in the Chesapeake Bay (USA) and its tidal tributaries. Hypoxia is one of the key water quality issues addressed as a result of the above Agreement. This paper summarizes the protection goals and specific criteria intended to achieve those goals for addressing hypoxia. The criteria take into account the variety of Bay habitats and the tendency towards low dissolved oxygen in some areas of the Bay. Stressful dissolved oxygen conditions were characterized for a diverse array of living resources of the Chesapeake Bay by different aquatic habitats: migratory fish spawning and nursery, shallow-water, open-water, deep-water, and deep-channel. The dissolved oxygen criteria derived for each of these habitats are intended to protect against adverse effects on survival, growth, reproduction and behavior. The criteria accommodate both spatial and temporal aspects of low oxygen events, and have been adopted into the Chesapeake Bay states – Maryland, Virginia, and Delaware – and the District of Columbia's water quality standards regulations. These criteria, now in the form of state regulatory standards, are driving an array of land-based and wastewater pollution reduction actions across the six-watershed.

Urbanization effects on fishes and habitat quality in a southern Piedmont river basin

USGS Publications Warehouse

Walters, D.M.; Freeman, Mary C.; Leigh, D.S.; Freeman, B.J.; Pringle, C.P.; Brown, Larry R.; Gray, Robert H.; Hughes, Robert H.; Meador, Michael

2005-01-01

We quantified the relationships among urban land cover, fishes, and habitat quality to determine how fish assemblages respond to urbanization and if a habitat index can be used as an indirect measure of urban effects on stream ecosystems. We sampled 30 wadeable streams along an urban gradient (5?37% urban land cover) in the Etowah River basin, Georgia. Fish assemblages, sampled by electrofishing standardized stream reaches, were assessed using species richness, density, and species composition metrics. Habitat quality was scored using the Rapid Habitat Assessment Protocol (RHAP) of the U.S. Environmental Protection Agency. Urban land cover (including total, high-, and low-density urban) was estimated for the drainage basin above each reach. A previous study of these sites indicated that stream slope and basin area were strongly related to local variation in assemblage structure. We used multiple linear regression (MLR) analysis to account for this variation and isolate the urban effect on fishes. The MLR models indicated that urbanization lowered species richness and density and led to predictable changes in species composition. Darters and sculpin, cyprinids, and endemics declined along the urban gradient whereas centrarchids persisted and became the dominant group. The RHAP was not a suitable indicator of urban effects because RHAP-urban relationships were confounded by an overriding influence of stream slope on RHAP scores, and urban-related changes in fish assemblage structure preceded gross changes in stream habitat quality. Regression analysis indicated that urban effects on fishes accrue rapidly (<10 years) and are detectable at low levels (~5?10% urbanization). We predict that the decline of endemics and other species will continue and centrarchid-dominated streams will become more common as development proceeds within the Etowah basin.

Diet composition of age-0 fishes in created habitats of the Lower Missouri River

USGS Publications Warehouse

Starks, Trevor A.; Long, James M.

2017-01-01

Channelization of the Missouri River has greatly reduced the availability of shallow water habitats used by many larval and juvenile fishes and contributed to imperilment of floodplain-dependent biota. Creation of small side channels, or chutes, is being used to restore shallow water habitat and reverse negative environmental effects associated with channelization. In the summer of 2012, the U.S. Army Corps of Engineers collected early life stages of fishes from constructed chutes and nearby unrestored shallow habitats at six sites on the Missouri River between Rulo, Nebraska and St. Louis, Missouri. We compared the diets of two abundant species of fishes to test the hypothesis that created shallow chutes provided better foraging habitat for early life stages than nearby unrestored shallow habitats. Graphical analysis of feeding patterns of freshwater drum indicated specialization on chironomid larvae, which were consumed in greater numbers in unrestored mainstem reaches compared to chutes. Hiodon spp. were more generalist feeders with no differences in prey use between habitat types. Significantly greater numbers of individuals with empty stomachs were observed in chute shallow-water habitats, indicating poor foraging habitat. For these two species, constructed chute shallow-water habitat does not appear to provide the hypothesized benefits of higher quality foraging habitat.

Optimal Site Characterization and Selection Criteria for Oyster Restoration using Multicolinear Factorial Water Quality Approach

NASA Astrophysics Data System (ADS)

Yoon, J.

2015-12-01

Elevated levels of nutrient loadings have enriched the Chesapeake Bay estuaries and coastal waters via point and nonpoint sources and the atmosphere. Restoring oyster beds is considered a Best Management Practice (BMP) to improve the water quality as well as provide physical aquatic habitat and a healthier estuarine system. Efforts include declaring sanctuaries for brood-stocks, supplementing hard substrate on the bottom and aiding natural populations with the addition of hatchery-reared and disease-resistant stocks. An economic assessment suggests that restoring the ecological functions will improve water quality, stabilize shorelines, and establish a habitat for breeding grounds that outweighs the value of harvestable oyster production. Parametric factorial models were developed to investigate multicolinearities among in situ water quality and oyster restoration activities to evaluate posterior success rates upon multiple substrates, and physical, chemical, hydrological and biological site characteristics to systematically identify significant factors. Findings were then further utilized to identify the optimal sites for successful oyster restoration augmentable with Total Maximum Daily Loads (TMDLs) and BMPs. Factorial models evaluate the relationship among the dependent variable, oyster biomass, and treatments of temperature, salinity, total suspended solids, E. coli/Enterococci counts, depth, dissolved oxygen, chlorophyll a, nitrogen and phosphorus, and blocks consist of alternative substrates (oyster shells versus riprap, granite, cement, cinder blocks, limestone marl or combinations). Factorial model results were then compared to identify which combination of variables produces the highest posterior biomass of oysters. Developed Factorial model can facilitate maximizing the likelihood of successful oyster reef restoration in an effort to establish a healthier ecosystem and to improve overall estuarine water quality in the Chesapeake Bay estuaries.

Apparent foraging success reflects habitat quality in an irruptive species, the Black-backed Woodpecker

Treesearch

Christopher T. Rota; Mark A. Rumble; Chad P. Lehman; Dylan C. Kesler; Joshua J. Millspaugh

2015-01-01

Dramatic fluctuations in food resources are a key feature of many habitats, and many species have evolved a movement strategy to exploit food resources that are unpredictable in space and time. The availability of food resources may be a particularly strong determinant of habitat quality for irruptive bird species. We studied the apparent foraging success of Black-...

Spawning habitat selection of hickory shad

USGS Publications Warehouse

Harris, Julianne E.; Hightower, J.E.

2011-01-01

We examined the spawning habitat selectivity of hickory shad Alosa mediocris, an anadromous species on the Atlantic coast of North America. Using plankton tows and artificial substrates (spawning pads), we collected hickory shad eggs in the Roanoke River, North Carolina, to identify spawning timing, temperature, and microhabitat use. Hickory shad eggs were collected by both sampling gears in March and April. The results from this and three other studies in North Carolina indicate that spawning peaks at water temperatures between 12.0??C and 14.9??C and that approximately 90% occurs between 11.0??C and 18.9??C. Hickory shad eggs were collected in run and riffle habitats. Water velocity and substrate were significantly different at spawning pads with eggs than at those without eggs, suggesting that these are important microhabitat factors for spawning. Hickory shad eggs were usually collected in velocities of at least 0.1 m/s and on all substrates except those dominated by silt. Eggs were most abundant on gravel, cobble, and boulder substrates. Hickory shad spawned further upstream in years when water discharge rates at Roanoke Rapids were approximately average during March and April (2005 and 2007), as compared with a severe drought year (2006), suggesting that water flows may affect not only spawning site selection but also the quantity and quality of spawning habitat available at a macrohabitat scale. Using our field data and a Bayesian approach to resource selection analysis, we developed a preliminary habitat suitability model for hickory shad. This Bayesian approach provides an objective framework for updating the model as future studies of hickory shad spawning habitat are conducted. ?? American Fisheries Society 2011.

Water quality of Calero Reservoir, Santa Clara County, California, 1981-83

USGS Publications Warehouse

Clifton, D.G.; Gloege, I.S.

1987-01-01

Data were collected from December 1980 to September 1983 to describe water quality conditions of Calero Reservoir and the Almaden-Calero canal, Santa Clara County, California. Results show that water in Calero Reservoir and the canal generally met water quality criteria, as identified by the California Regional Water Quality Control Board San Francisco Bay Region, for municipal and domestic supply, water contact and non-contact recreation, warm water fish habitat, wildlife habitat, and fish spawning. Water temperature profiles show that Calero Reservoir can be classified as a warm monomictic reservoir. Water transparency profiles showed rapid attenuation of light with depth in the water column. The depth of the euphotic zone ranged from .5 m to 5.0 m. In winter and spring, light-extinction values generally were high throughout the water column; in summer and fall, values generally were high near the reservoir bottom. Dissolved oxygen concentrations were < 5.0 mg/L in about 22% of the measurements. Median pH values were 7.9 in the reservoir and 8.4 in the canal. Mean specific conductance values were 299 microsiemens/cm at 25 C in the reservoir and 326 in the canal. Calcium and magnesium were the dominant cations and bicarbonate the dominant anion in Calero Reservoir. Concentrations of total recoverable mercury in the bottom sediments in Calero Reservoir ranged from 0.06 to 0.85 mg/kg, but concentrations in the water column were was generally < 1 mg/L. Mean total nitrogen concentration in the Reservoir was 1.00 mg/L, much of it in dissolved form (mean concentration was 0.85 mg/L). Mean total organic nitrogen concentration in Calero Reservoir was 0.65 mg/L, and mean total nitrate concentration was 0.21 mg/L. Mean total phosphorus and dissolved orthophosphorous concentrations were 0.05 and 0.019 mg/L, respectively. Net primary productivity in the euphotic zone ranged from -2,000 to 10,000 mg of oxygen/sq m/day; the median value was 930. Carlson 's trophic-state index

Future changes in Yuan River ecohydrology: Individual and cumulative impacts of climates change and cascade hydropower development on runoff and aquatic habitat quality.

PubMed

Wen, Xin; Liu, Zhehua; Lei, Xiaohui; Lin, Rongjie; Fang, Guohua; Tan, Qiaofeng; Wang, Chao; Tian, Yu; Quan, Jin

2018-08-15

The eco-hydrological system in southwestern China is undergoing great changes in recent decades owing to climate change and extensive cascading hydropower exploitation. With a growing recognition that multiple drivers often interact in complex and nonadditive ways, the purpose of this study is to predict the potential future changes in streamflow and fish habitat quality in the Yuan River and quantify the individual and cumulative effect of cascade damming and climate change. The bias corrected and spatial downscaled Coupled Model Intercomparison Project Phase 5 (CMIP5) General Circulation Model (GCM) projections are employed to drive the Soil and Water Assessment Tool (SWAT) hydrological model and to simulate and predict runoff responses under diverse scenarios. Physical habitat simulation model is established to quantify the relationship between river hydrology and fish habitat, and the relative change rate is used to assess the individual and combined effects of cascade damming and climate change. Mean annual temperature, precipitation and runoff in 2015-2100 show an increasing trend compared with that in 1951-2010, with a particularly pronounced difference between dry and wet years. The ecological habitat quality is improved under cascade hydropower development since that ecological requirement has been incorporated in the reservoir operation policy. As for middle reach, the runoff change from January to August is determined mainly by damming, and climate change influence becomes more pronounced in dry seasons from September to December. Cascade development has an effect on runoff of lower reach only in dry seasons due to the limited regulation capacity of reservoirs, and climate changes have an effect on runoff in wet seasons. Climate changes have a less significant effect on fish habitat quality in middle reach than damming, but a more significant effect in lower reach. In addition, the effect of climate changes on fish habitat quality in lower reach is high

Water-quality assessment of part of the upper Mississippi River basin, Minnesota and Wisconsin: Design and implementation of water-quality studies, 1995-98

USGS Publications Warehouse

Stark, James R.; Fallon, J.D.; Fong, A.L.; Goldstein, R.M.; Hanson, P.E.; Kroening, S.E.; Lee, K.E.

1999-01-01

This report describes the design, site-selection, and implementation of the study. Methods used to collect, process, and analyze samples; characterize sites; and assess habitat are described. A comprehensive list of sample sites is provided. Sample analyses for water-quality studies included chlorophyll a, major inorganic constituents, nutrients, trace elements, tritium, radon, environmental isotopes, organic carbon, pesticides, volatile organic compounds, and other synthetic and naturallyoccurring organic compounds. Aquatic-biological samples included fish, benthic macroinvertebrates, and algal enumeration and identification, as well as synthetic-organic compounds and trace elements in fish tissue.

Prisoners in Their Habitat? Generalist Dispersal by Habitat Specialists: A Case Study in Southern Water Vole (Arvicola sapidus)

PubMed Central

Centeno-Cuadros, Alejandro; Román, Jacinto; Delibes, Miguel; Godoy, José Antonio

2011-01-01

Habitat specialists inhabiting scarce and scattered habitat patches pose interesting questions related to dispersal such as how specialized terrestrial mammals do to colonize distant patches crossing hostile matrices. We assess dispersal patterns of the southern water vole (Arvicola sapidus), a habitat specialist whose habitat patches are distributed through less than 2% of the study area (overall 600 km2) and whose populations form a dynamic metapopulational network. We predict that individuals will require a high ability to move through the inhospitable matrix in order to avoid genetic and demographic isolations. Genotypes (N = 142) for 10 microsatellites and sequences of the whole mitochondrial Control Region (N = 47) from seven localities revealed a weak but significant genetic structure partially explained by geographic distance. None of the landscape models had a significant effect on genetic structure over that of the Euclidean distance alone and no evidence for efficient barriers to dispersal was found. Contemporary gene flow was not severely limited for A. sapidus as shown by high migration rates estimates (>10%) between non-neighbouring areas. Sex-biased dispersal tests did not support differences in dispersal rates, as shown by similar average axial parent-offspring distances, in close agreement with capture-mark-recapture estimates. As predicted, our results do not support any preferences of the species for specific landscape attributes on their dispersal pathways. Here, we combine field and molecular data to illustrate how a habitat specialist mammal might disperse like a habitat generalist, acquiring specific long-distance dispersal strategies as an adaptation to patchy, naturally fragmented, heterogeneous and unstable habitats. PMID:21931775

Occurrence and biogeography of hydroids (Cnidaria: Hydrozoa) from deep-water coral habitats off the southeastern United States

NASA Astrophysics Data System (ADS)

Henry, Lea-Anne; Nizinski, Martha S.; Ross, Steve W.

2008-06-01

Deep-water coral habitats off the southeastern USA (SEUS) support diverse fish and invertebrate assemblages, but are poorly explored. This study is the first to report on the hydroids collected from these habitats in this area. Thirty-five species, including two species that are likely new to science, were identified from samples collected primarily by manned submersible during 2001-2005 from deep-water coral habitats off North Carolina to east-central Florida. Eleven of the species had not been reported since the 19th to mid-20th century. Ten species, and one family, the Rosalindidae, are documented for the first time in the SEUS. Latitudinal ranges of 15 species are extended, and the deepest records in the western North Atlantic for 10 species are reported. A species accumulation curve illustrated that we continue to add to our knowledge of hydroid diversity in these habitats. Sexually mature individuals were collected for 19 species during the summer to early autumn months. Most of the observed species (89%) liberate planula larvae as part of their life cycles, suggesting that these species exhibit a reproductive strategy that reduces the risk of dispersal to sub-optimal habitats. Hydroids occurred across various substrata including coral rubble, live corals, rock and other animal hosts including hydroids themselves. All observed species were regionally widespread with typically deep-neritic to bathyal sub-tropical/tropical distributions. Hydroid assemblages from deep-water SEUS coral habitats were most similar to those from adjacent deep-water habitats off the SEUS (17 shared species), and those in the Straits of Florida/Bahamas and Caribbean/West Indian regions (14 and 8 shared species, respectively). The similarity to sub-tropical and tropical assemblages and the richness of plumularioids in the SEUS deep-water coral habitats support the idea of a Pleistocene intrusion of tropical species northwards following an intensification of the Gulf Stream from the

Does coastal lagoon habitat quality affect fish growth rate and their recruitment? Insights from fishing and acoustic surveys

NASA Astrophysics Data System (ADS)

Brehmer, P.; Laugier, T.; Kantoussan, J.; Galgani, F.; Mouillot, D.

2013-07-01

Ensuring the sustainability of fish resources necessitates understanding their interaction with coastal habitats, which is becoming ever more challenging in the context of ever increasing anthropogenic pressures. The ability of coastal lagoons, exposed to major sources of disturbance, to provide resources and suitable habitats for growth and survival of juvenile fish is especially important. We analysed three lagoons with different ecological statuses and habitat quality on the basis of their eutrophication and ecotoxicity (Trix test) levels. Fish abundances were sampled using fishing and horizontal beaming acoustic surveys with the same protocols in the same year. The relative abundance of Anguilla anguilla, Dicentrarchus labrax or the Mugilidae group was not an indicator of habitat quality, whereas Atherina boyeri and Sparus aurata appeared to be more sensitive to habitat quality. Fish abundance was higher in the two lagoons with high eutrophication and ecotoxicity levels than in the less impacted lagoon, while fish sizes were significantly higher in the two most severely impacted lagoons. This leads us to suggest low habitat quality may increase fish growth rate (by the mean of a cascading effect), but may reduce lagoon juvenile abundance by increasing larval mortality. Such a hypothesis needs to be further validated using greater investigations which take into account more influences on fish growth and recruitment in such variable environments under complex multi-stressor conditions.

Water cycle and its management for plant habitats at reduced pressures.

PubMed

Rygalov, Vadim Y; Fowler, Philip A; Wheeler, Raymond M; Bucklin, Ray A

2004-01-01

Experimental and mathematical models were developed for describing and testing temperature and humidity parameters for plant production in bioregenerative life support systems. A factor was included for analyzing systems operating at low (10-101.3 kPa) pressure to reduce gas leakage and structural mass (e.g., inflatable greenhouses for space application). The expected close relationship between temperature and relative humidity was observed, along with the importance of heat exchanger coil temperature and air circulation rate. The presence of plants in closed habitats results in increased water flux through the system. Changes in pressure affect gas diffusion rates and surface boundary layers, and change convective transfer capabilities and water evaporation rates. A consistent observation from studies with plants at reduced pressures is increased evapotranspiration rates, even at constant vapor pressure deficits. This suggests that plant water status is a critical factor for managing low-pressure production systems. The approach suggested should help space mission planners design artificial environments in closed habitats.

Water cycle and its management for plant habitats at reduced pressures

NASA Technical Reports Server (NTRS)

Rygalov, Vadim Y.; Fowler, Philip A.; Wheeler, Raymond M.; Bucklin, Ray A.

2004-01-01

Experimental and mathematical models were developed for describing and testing temperature and humidity parameters for plant production in bioregenerative life support systems. A factor was included for analyzing systems operating at low (10-101.3 kPa) pressure to reduce gas leakage and structural mass (e.g., inflatable greenhouses for space application). The expected close relationship between temperature and relative humidity was observed, along with the importance of heat exchanger coil temperature and air circulation rate. The presence of plants in closed habitats results in increased water flux through the system. Changes in pressure affect gas diffusion rates and surface boundary layers, and change convective transfer capabilities and water evaporation rates. A consistent observation from studies with plants at reduced pressures is increased evapotranspiration rates, even at constant vapor pressure deficits. This suggests that plant water status is a critical factor for managing low-pressure production systems. The approach suggested should help space mission planners design artificial environments in closed habitats.

Water-quality assessment of the lower Illinois River Basin; environmental setting

USGS Publications Warehouse

Warner, Kelly L.

1998-01-01

The lower Illinois River Basin (LIRB) encompasses 18,000 square miles of central and western Illinois. Historical and recent information from Federal, State, and local agencies describing the physiography, population, land use, soils, climate, geology, streamflow, habitat, ground water, water use, and aquatic biology is summarized to describe the environmental setting of the LIRB. The LIRB is in the Till Plains Section of the Central Lowland physiographic province. The basin is characterized by flat topography, which is dissected by the Illinois River. The drainage pattern of the LIRB has been shaped by many bedrock and glacial geologic processes. Erosion prior to and during Pleistocene time created wide and deep bedrock valleys. The thickest deposits and most major aquifers are in buried bedrock valleys. The Wisconsinan glaciation, which bisects the northern half of the LIRB, affects the distribution and characteristics of glacial deposits in the basin. Agriculture is the largest land use and forested land is the second largest land use in the LIRB. The major urban areas are near Peoria, Springfield, Decatur, and Bloomington-Normal. Soil type and distribution affect the amount of soil erosion, which results in sedimentation of lakes and reservoirs in the basin. Rates of soil erosion of up to 2 percent per year of farmland soil have been measured. Many of the 300 reservoirs, lakes, and wetlands are disappearing because of sedimentation resulting from agriculture activities, levee building, and urbanization. Sedimentation and the destruction of habitat appreciably affect the ecosystem. The Illinois River is a large river-floodplain ecosystem where biological productivity is enhanced by annual flood pulses that advance and retreat over the flood plain and temporarily expand backwater and flood-plain lakes. Ground-water discharge to streams affects the flow and water quality of the streams. The water budget of several subbasins show variability in ground-water

Water-quality assessment of Francis E Walter reservoir, Luzerne and Carbon counties, Pennsylvania

USGS Publications Warehouse

Barker, J.L.

1983-01-01

Water-quality data, both past and present, show that the waters of the upper Lehigh River basin are somewhat acidic, but otherwise are generally of good quality. This report contains a summary of all known water-quality data collected by the U.S. Geological Survey and other agencies, as well as a synopsis of current water-quality conditions in the reservoir and its tributaries. Water-quality data collected from June 1981 to May 1982 indicate that raising the pool level from 1,300 to approximately 1,392 feet above sea level (NGVD of 1929) has had some significant, if only temporary, detrimental impacts on the reservoir system and its discharge. Depth profile measurements show that, while the impoindment was thermally stratified for only about 2 weeks, the dissolved oxygen concentrations were depressed to levels critical to fishlife throughout much of the reservoir. Another effect of the raised pool was the lowering of pH in the impoinded water. Median pH values were less than 6.0 throughout the reservoir, whereas they commonly exceeded 6.5 at the normal pool elevation. Tests for fecal coliform and fecal streptococcus indicate the impoinded water is nearly free of enteric bacteria. Algal analyses and nutrient concentrations support the premise that the impoundment is nutrient poor and phosphorus limited. Raising the water level an additional 125 feet should have no permanent detrimental effect upon water quality and will greatly increase available habitat for fish and waterflow. Increased retention time should not alter the current trophic status and may decrease the concentration of available nutrients.

WaterQualityWatch and water-quality information bookmark

USGS Publications Warehouse

Wilde, Franceska D.

2014-01-01

WaterQualityWatch is an online resource of the U.S. Geological Survey (USGS) that provides access to continuous real-time measurements of water temperature, specific electrical conductance, pH, dissolved oxygen, turbidity, and nitrate at selected data-collection stations throughout the Nation. Additional online resources of the USGS that pertain to various types of water-quality information are shown on the reverse side of this bookmark.

Community structure of age-0 fishes in paired mainstem and created shallow-water habitats in the Lower Missouri River

USGS Publications Warehouse

Starks, Trevor A.; Long, James M.; Dzialowski, Andrew R.

2016-01-01

Anthropogenic alterations to aquatic ecosystems have greatly reduced and homogenized riverine habitat, especially those used by larval and juvenile fishes. Creation of shallow-water habitats is used as a restoration technique in response to altered conditions in several studies globally, but only recently in the USA. In the summer of 2012, the U.S. Army Corps of Engineers sampled larval and juvenile fishes at six paired sites (mainstem and constructed chute shallow-water habitats) along a section of the Missouri River between Rulo, NE and St. Louis, MO, USA. From those samples, we enumerated and identified a total of 7622 fishes representing 12 families. Community responses of fishes to created shallow-water habitats were assessed by comparisons of species richness and diversity measures between paired sites and among sampling events. Shannon entropy measures were transformed, and gamma diversity (total diversity) was partitioned into two components, alpha (within community) and beta (between community) diversity using a multiplicative decomposition method. Mantel test results suggest site location, time of sampling event and habitat type were drivers of larval and juvenile community structure. Paired t-test results indicated little to no differences in beta diversity between habitat types; however, chute habitats had significantly higher alpha and gamma diversity as well as increased abundances of Asian carp larvae when compared with mainstem shallow-water habitat. Our results not only show the importance of created shallow-water habitat in promoting stream fish diversity but also highlight the role space and time may play in future restoration and management efforts. 

Age-0 Lost River sucker and shortnose sucker nearshore habitat use in Upper Klamath Lake, Oregon: A patch occupancy approach

USGS Publications Warehouse

Burdick, S.M.; Hendrixson, H.A.; VanderKooi, S.P.

2008-01-01

We examined habitat use by age-0 Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris over six substrate classes and in vegetated and nonvegetated areas of Upper Klamath Lake, Oregon. We used a patch occupancy approach to model the effect of physical habitat and water quality conditions on habitat use. Our models accounted for potential inconsistencies in detection probability among sites and sampling occasions as a result of differences in fishing gear types and techniques, habitat characteristics, and age-0 fish size and abundance. Detection probability was greatest during mid- to late summer, when water temperatures were highest and age-0 suckers were the largest. The proportion of sites used by age-0 suckers was inversely related to depth (range = 0.4-3.0 m), particularly during late summer. Age-0 suckers were more likely to use habitats containing small substrate (64 mm) and habitats with vegetation than those without vegetation. Relatively narrow ranges in dissolved oxygen, temperature, and pH prevented us from detecting effects of these water quality features on age-0 sucker nearshore habitat use.

Fish movement and habitat use depends on water body size and shape

USGS Publications Warehouse

Woolnough, D.A.; Downing, J.A.; Newton, T.J.

2009-01-01

Home ranges are central to understanding habitat diversity, effects of fragmentation and conservation. The distance that an organism moves yields information on life history, genetics and interactions with other organisms. Present theory suggests that home range is set by body size of individuals. Here, we analyse estimates of home ranges in lakes and rivers to show that body size of fish and water body size and shape influence home range size. Using 71 studies including 66 fish species on five continents, we show that home range estimates increased with increasing water body size across water body shapes. This contrasts with past studies concluding that body size sets home range. We show that water body size was a consistently significant predictor of home range. In conjunction, body size and water body size can provide improved estimates of home range than just body size alone. As habitat patches are decreasing in size worldwide, our findings have implications for ecology, conservation and genetics of populations in fragmented ecosystems. ?? 2008 Blackwell Munksgaard.

Quality-Assurance Plan for Water-Quality Activities in the USGS Ohio Water Science Center

USGS Publications Warehouse

Francy, Donna S.; Shaffer, Kimberly H.

2008-01-01

In accordance with guidelines set forth by the Office of Water Quality in the Water Resources Discipline of the U.S. Geological Survey, a quality-assurance plan has been written for use by the Ohio Water Science Center in conducting water-quality activities. This quality-assurance plan documents the standards, policies, and procedures used by the Ohio Water Science Center for activities related to the collection, processing, storage, analysis, and publication of water-quality data. The policies and procedures documented in this quality-assurance plan for water-quality activities are meant to complement the Ohio Water Science Center quality-assurance plans for water-quality monitors, the microbiology laboratory, and surface-water and ground-water activities.

Habitat preferences of a corallivorous reef fish: predation risk versus food quality

NASA Astrophysics Data System (ADS)

Brooker, R. M.; Munday, P. L.; Mcleod, I. M.; Jones, G. P.

2013-09-01

Many animals preferentially select a habitat from a range of those potentially available. However, the consequences of these preferences for distribution and abundance, and the underlying basis of habitat preferences are often unknown. The present study, conducted at Great Keppel Island, Australia, examined how distribution and abundance of an obligate corallivorous filefish, Oxymonacanthus longirostris, relates to coral architecture and diversity. The main drivers of the distribution and abundance of O. longirostris among reefs were coral species richness and availability of branching coral. Feeding territories had a higher percentage of Acropora coral than surrounding habitat. In addition, feeding territories had a higher percentage of the structurally important branching coral, Acropora nobilis, and a primary prey species, Acropora millepora. A series of pair-wise choice experiments in which both structural complexity and coral tissue quality were independently manipulated showed that habitat choice was primarily based on structural complexity and shelter characteristics. In addition, the choice for the preferred coral ( A. nobilis) was stronger in the presence of a piscivorous fish. These results indicate that species-diverse coral habitats, which provide sufficient structural complexity along with nutritionally important prey, are essential for population persistence of this small, corallivorous reef fish.

Evaluating water management scenarios to support habitat management for the Cape Sable seaside sparrow

USGS Publications Warehouse

Beerens, James M.; Romañach, Stephanie S.; McKelvy, Mark

2016-06-22

The endangered Cape Sable seaside sparrow (Ammodramus maritimus mirabilis) is endemic to south Florida and a key indicator species of marl prairie, a highly diverse freshwater community in the Florida Everglades. Maintenance and creation of suitable habitat is seen as the most important pathway to the persistence of the six existing sparrow subpopulations; however, major uncertainties remain in how to increase suitable habitat within and surrounding these subpopulations, which are vulnerable to environmental stochasticity. Currently, consistently suitable conditions for the Cape Sable seaside sparrow are only present in two of these subpopulations (B and E). The water management scenarios evaluated herein were intended to lower water levels and improve habitat conditions in subpopulation A and D, raise water levels to improve habitat conditions in subpopulations C and F, and minimize impacts to subpopulations B and E. Our objective in this analysis was to compare these scenarios utilizing a set of metrics (short- to long-time scales) that relate habitat suitability to hydrologic conditions. Although hydrologic outputs are similar across scenarios in subpopulation A, scenario R2H reaches the hydroperiod and depth suitability targets more than the other scenarios relative to ECB, while minimizing negative consequences to subpopulation E. However, although R2H hydroperiods are longer than those for ECB during the wet season in subpopulations C and F, depths during the breeding season are predicted to decrease in suitability (less than -50 cm) relative to existing conditions.

Heavy metal concentrations in water, sediments and body tissues of red worm (Tubifex spp.) collected from natural habitats in Mumbai, India.

PubMed

Singh, Ravendra Kumar; Chavan, Sugandha L; Sapkale, Pravin H

2007-06-01

Live feeds, especially Tubifex spp., which are collected from a wide variety of polluted habitats, are used by aquarium fish keepers in India. These habitats receive domestic sewage and industrial wastes from nearby residential and industrial areas. Reports of morbidity and mortality from aquarium fish culturists in and around Mumbai led to the present investigations on the ecology of these habitats with a view to assess the water quality, presence of heavy metals in the environment and their bioaccumulation in Tubifex worms, and to examine whether these habitats could be exploited to meet the demand of the industry. Six natural red worm (Tubifex spp.) collection centres in Mumbai and Thane districts of Maharashtra state in India constituting a major source of live Tubifex supply to aquarium fish industry were evaluated for pollution, heavy metal concentration in water, sediments and in the body tissues of Tubifex. Data revealed the presence of heavy metals in water and sediments at collection sites and bioaccumulation of cadmium, iron, lead, zinc and copper in body tissues of Tubifex worms. Cadmium ranged from 2.38 to 7.21 mg/kg, iron 671.9 to 5738 mg/kg, lead 14.95 to 33.49 mg/kg, zinc 60.20 to 166.60 mg/kg and copper 29.38 to 108.90 mg/kg of dry Tubifex worms. The study suggests that all the six collection sites are polluted and the red worms contaminated with heavy metals and hence, unfit for use in aquaria or feeding any variety of fish or crustaceans in the hatcheries.

Constructed Wetlands for Wastewater Treatment and Wildlife Habitat: 17 Case Studies

EPA Pesticide Factsheets

This document provides brief descriptions of 17 wetland treatment systems from across the country that are providing significant water quality benefits while demonstrating additional benefits such as wildlife habitat.

Characterization of water bodies for mosquito habitat using a multi-sensor approach

NASA Astrophysics Data System (ADS)

Midekisa, A.; Wimberly, M. C.; Senay, G. B.

2012-12-01

Malaria is a major health problem in Ethiopia. Anopheles arabiensis, which inhabits and breeds in a variety of aquatic habitats, is the major mosquito vector for malaria transmission in the region. In the Amhara region of Ethiopia, mosquito breeding sites are heterogeneously distributed. Therefore, accurate characterization of aquatic habitats and potential breeding sites can be used as a proxy to measure the spatial distribution of malaria risk. Satellite remote sensing provides the ability to map the spatial distribution and monitor the temporal dynamics of surface water. The objective of this study is to map the probability of surface water accumulation to identify potential vector breeding sites for Anopheles arabiensis using remote sensing data from sensors at multiple spatial and temporal resolutions. The normalized difference water index (NDWI), which is based on reflectance in the green and the near infrared (NIR) bands were used to estimate fractional cover of surface water. Temporal changes in surface water were mapped using NDWI indices derived from MODIS surface reflectance product (MOD09A1) for the period 2001-2012. Landsat TM and ETM+ imagery were used to train and calibrate model results from MODIS. Results highlighted interannual variation and seasonal changes in surface water that were observed from the MODIS time series. Static topographic indices that estimate the potential for water accumulation were generated from 30 meter Shuttle Radar Topography Mission (SRTM) elevation data. Integrated fractional surface water cover was developed by combining the static topographic indices and dynamic NDWI indices using Geographic Information System (GIS) overlay methods. Accuracy of the results was evaluated based on ground truth data that was collected on presence and absence of surface water immediately after the rainy season. The study provided a multi-sensor approach for mapping areas with a high potential for surface water accumulation that are

Assessing the effects of regional payment for watershed services program on water quality using an intervention analysis model.

PubMed

Lu, Yan; He, Tian

2014-09-15

Much attention has been recently paid to ex-post assessments of socioeconomic and environmental benefits of payment for ecosystem services (PES) programs on poverty reduction, water quality, and forest protection. To evaluate the effects of a regional PES program on water quality, we selected chemical oxygen demand (COD) and ammonia-nitrogen (NH3-N) as indicators of water quality. Statistical methods and an intervention analysis model were employed to assess whether the PES program produced substantial changes in water quality at 10 water-quality sampling stations in the Shaying River watershed, China during 2006-2011. Statistical results from paired-sample t-tests and box plots of COD and NH3-N concentrations at the 10 stations showed that the PES program has played a positive role in improving water quality and reducing trans-boundary water pollution in the Shaying River watershed. Using the intervention analysis model, we quantitatively evaluated the effects of the intervention policy, i.e., the watershed PES program, on water quality at the 10 stations. The results suggest that this method could be used to assess the environmental benefits of watershed or water-related PES programs, such as improvements in water quality, seasonal flow regulation, erosion and sedimentation, and aquatic habitat. Copyright © 2014 Elsevier B.V. All rights reserved.

Water quality evaluation of Al-Gharraf river by two water quality indices

NASA Astrophysics Data System (ADS)

Ewaid, Salam Hussein

2017-11-01

Water quality of Al-Gharraf river, the largest branch of Tigris River south of Iraq, was evaluated by the National Sanitation Foundation Water Quality Index (NFS WQI) and the Heavy Metal Pollution Index (HPI) depending on 13 physical, chemical, and biological parameters of water quality measured monthly at ten stations on the river during 2015. The NSF-WQI range obtained for the sampling sites was 61-70 indicating a medium water quality. The HPI value was 98.6 slightly below the critical value for drinking water of 100, and the water quality in the upstream stations is better than downstream due to decrease in water and the accumulation of contaminants along the river. This study explains the significance of applying the water quality indices that show the aggregate impact of ecological factors in charge of water pollution of surface water and which permits translation of the monitoring data to assist the decision makers.

Developing a Dynamic SPARROW Water Quality Decision Support System Using NASA Remotely-Sensed Products

NASA Astrophysics Data System (ADS)

Al-Hamdan, M. Z.; Smith, R. A.; Hoos, A.; Schwarz, G. E.; Alexander, R. B.; Crosson, W. L.; Srikishen, J.; Estes, M., Jr.; Cruise, J.; Al-Hamdan, A.; Ellenburg, W. L., II; Flores, A.; Sanford, W. E.; Zell, W.; Reitz, M.; Miller, M. P.; Journey, C. A.; Befus, K. M.; Swann, R.; Herder, T.; Sherwood, E.; Leverone, J.; Shelton, M.; Smith, E. T.; Anastasiou, C. J.; Seachrist, J.; Hughes, A.; Graves, D.

2017-12-01

quality in near real time and for the formulation of future scenarios to inform strategic planning. Time-varying SPARROW outputs will aid water managers in decision making regarding allocation of resources in protecting aquatic habitats, planning for harmful algal blooms, and restoration of degraded habitats, stream segments, or lakes.

Development of water quality thresholds during dredging for the protection of benthic primary producer habitats.

PubMed

Sofonia, Jeremy J; Unsworth, Richard K F

2010-01-01

Given the potential for adverse effects of ocean dredging on marine organisms, particularly benthic primary producer communities, the management and monitoring of those activities which cause elevated turbidity and sediment loading is critical. In practice, however, this has proven challenging as the development of water quality threshold values, upon which management responses are based, are subject to a large number of physical and biological parameters that are spatially and temporally specific. As a consequence, monitoring programs to date have taken a wide range of different approaches, most focusing on measures of turbidity reported as nephelometric turbidity units (NTU). This paper presents a potential approach in the determination of water quality thresholds which utilises data gathered through the long-term deployment of in situ water instruments, but suggests a focus on photosynthetic active radiation (PAR) rather than NTU as it is more relevant biologically and inclusive of other site conditions. A simple mathematical approach to data interpretation is also presented which facilitates threshold value development, not individual values of concentrations over specific intervals, but as an equation which may be utilized in numerical modelling.

Water quality of Danube Delta systems: ecological status and prediction using machine-learning algorithms.

PubMed

Stoica, C; Camejo, J; Banciu, A; Nita-Lazar, M; Paun, I; Cristofor, S; Pacheco, O R; Guevara, M

2016-01-01

Environmental issues have a worldwide impact on water bodies, including the Danube Delta, the largest European wetland. The Water Framework Directive (2000/60/EC) implementation operates toward solving environmental issues from European and national level. As a consequence, the water quality and the biocenosis structure was altered, especially the composition of the macro invertebrate community which is closely related to habitat and substrate heterogeneity. This study aims to assess the ecological status of Southern Branch of the Danube Delta, Saint Gheorghe, using benthic fauna and a computational method as an alternative for monitoring the water quality in real time. The analysis of spatial and temporal variability of unicriterial and multicriterial indices were used to assess the current status of aquatic systems. In addition, chemical status was characterized. Coliform bacteria and several chemical parameters were used to feed machine-learning (ML) algorithms to simulate a real-time classification method. Overall, the assessment of the water bodies indicated a moderate ecological status based on the biological quality elements or a good ecological status based on chemical and ML algorithms criteria.

Coast Salish and U.S. Geological Survey 2009 Tribal Journey water quality project

USGS Publications Warehouse

Akin, Sarah K.; Grossman, Eric E.

2010-01-01

The Salish Sea, contained within the United States and British Columbia, Canada, is the homeland of the Coast Salish Peoples and contains a diverse array of marine resources unique to this area that have sustained Coast Salish cultures and traditions for millennia. In July 2009, the Coast Salish People and U.S. Geological Survey conducted a second water quality study of the Salish Sea to examine spatial and temporal variability of environmental conditions of these surface waters as part of the annual Tribal Journey. Six canoes of approximately 100 towed multi parameter water-quality sondes as the Salish People traveled their ancestral waters during the middle of summer. Sea surface temperature, salinity, pH, dissolved oxygen, and turbidity were measured simultaneously at ten-second intervals, and more than 54,000 data points spanning 1,300 kilometers of the Salish Sea were collected. The project also synthesized Coast Salish ecological knowledge and culture with scientific monitoring to better understand and predict the response of coastal habitats and marine resources. Comparisons with data collected in 2008 reveal significantly higher mean surface-water temperatures in most subbasins in 2009 linked to record air temperatures that affected the Pacific Northwest in July 2009. Through large-scale spatial measurements collected each summer, the project helps to identify patterns in summer water quality, areas of water-quality impairment, and trends occurring through time.

Habitat selection by postbreeding female diving ducks: Influence of habitat attributes and conspecifics

USGS Publications Warehouse

Austin, Jane E.; O'Neil, Shawn T.; Warren, Jeffrey M.

2017-01-01

Habitat selection studies of postbreeding waterfowl have rarely focused on within-wetland attributes such as water depth, escape cover, and food availability. Flightless waterfowl must balance habitat selection between avoiding predation risks and feeding. Reproductively successful female ducks face the greatest challenges because they begin the definitive prebasic molt at or near the end of brood rearing, when their body condition is at a low point. We assessed the relative importance of habitat attributes and group effects in habitat selection by postbreeding female lesser scaup Aythya affinis on a 2332-ha montane wetland complex during the peak flightless period (August) over seven years. Hypothesis-based habitat attributes included percent open water, open water:emergent edge density, water depth, percent flooded bare substrate, fetch (distance wind can travel unobstructed), group size, and several interactions representing functional responses to interannual variation in water levels. Surveys of uniquely marked females were conducted within randomly ordered survey blocks. We fitted two-part generalized linear mixed-effects models to counts of marked females within survey blocks, which allowed us to relate habitat attributes to relative probability of occurrence and, given the presence of a marked female, abundance of marked individuals. Postbreeding female scaup selected areas with water depths > 40 cm, large open areas, and intermediate edge densities but showed no relation to flooded bare substrate, suggesting their habitat preferences were more influenced by avoiding predation risks and disturbances than in meeting foraging needs. Grouping behavior by postbreeding scaup suggests habitat selection is influenced in part by behavioral components and/or social information, conferring energetic and survival benefits (predation and disturbance risks) but potentially also contributing to competition for food resources. This study demonstrates the importance of

Level I water-quality inventory and monitoring, Richmond National Battlefield Park, Virginia

USGS Publications Warehouse

Moberg, Roger M.; Rice, Karen C.

2002-01-01

The U.S. Geological Survey conducted a Level I Water-Quality Inventory and Monitoring (WAQIM) data-collection effort for Richmond National Battlefield Park (Richmond NBP) from August 2001 through April 2002. The primary objective of the WAQIM program was to provide the National Park Service (NPS) and Richmond NBP with at least a nominal inventory of its natural resources and to provide those data in a data-management system consistent with park management needs. Water-quality inventory data (physical, chemical, and biological) were collected from "key" water bodies within the boundaries of Richmond NBP. The key water bodies are those waters within park boundaries that are essential to the central cultural, historical or natural resources management themes of the parks or provide habitats to threatened or endangered plants and animals. Data were collected during the fall, winter, spring, and summer over a range of hydrologic conditions. Because of the drought conditions that persisted during the study period, variations in flow between seasons were less pronounced than during normal hydrologic conditions.

Monitoring and Mapping Off-Channel Water Quality in the Willamette River, Oregon

NASA Astrophysics Data System (ADS)

Buccola, N. L.; Rounds, S. A.; Smith, C.; Anderson, C.; Jones, K.; Mangano, J.; Wallick, R.

2016-12-01

The floodplain of the Willamette River in northwestern Oregon includes remnant slower-moving sloughs, side-channels, and alcoves that provide rearing habitat and potential cool-water sources for native cold-water fish species, such as the federally threatened Chinook salmon. The mapping and characterization of the hydraulics and water sources of these off-channel areas is the first step toward protecting and restoring these resources for future generations. A primary focus of this study is to determine how flow management can increase the habitat value of these off-channel areas, especially during summer low-flow periods when water temperatures in the main channel regularly exceed lethal temperatures for salmonids. The U.S. Geological Survey, in cooperation with U.S. Army Corps of Engineers and Oregon State University, has been measuring the characteristics of off-channel water quality in the Willamette River under a variety of water levels in summer 2015-16. About 30 diverse off-channel sites within the Willamette floodplain are being monitored and compared with conditions in the main channel. Hourly water temperature, conductivity, and dissolved oxygen (DO) data are being collected at a subset of these sites. Some deep off-channel pools have substantial, consistent cool-water inflows that can dominate locally, allowing them to function as cold-water refuges for salmonids at varying mainstem Willamette flows. Other sloughs have varying characteristics due to intermittent connections to the main channel, depending on river levels. A vibrant community of algae and aquatic macrophytes often coincide with thick layers of fine sediment or organic detritus near the bed, producing low DO zones (<5 mg/L) in many slower-moving off-channel areas. We propose some preliminary hydro-geomorphic categories to better explain cool inflows as sourced from regional groundwater aquifers or localized subsurface river features. A better understanding of the processes governing the

Predation and infanticide influence ideal free choice by a parrot occupying heterogeneous tropical habitats.

PubMed

Bonebrake, Timothy C; Beissinger, Steven R

2010-06-01

The ideal free distribution (IFD) predicts that organisms will disperse to sites that maximize their fitness based on availability of resources. Habitat heterogeneity underlies resource variation and influences spatial variation in demography and the distribution of populations. We relate nest site productivity at multiple scales measured over a decade to habitat quality in a box-nesting population of Forpus passerinus (green-rumped parrotlets) in Venezuela to examine critical IFD assumptions. Variation in reproductive success at the local population and neighborhood scales had a much larger influence on productivity (fledglings per nest box per year) than nest site or female identity. Habitat features were reliable cues of nest site quality. Nest sites with less vegetative cover produced greater numbers of fledglings than sites with more cover. However, there was also a competitive cost to nesting in high-quality, low-vegetative cover nest boxes, as these sites experienced the most infanticide events. In the lowland local population, water depth and cover surrounding nest sites were related with F. passerinus productivity. Low vegetative cover and deeper water were associated with lower predation rates, suggesting that predation could be a primary factor driving habitat selection patterns. Parrotlets also demonstrated directional dispersal. Pairs that changed nest sites were more likely to disperse from poor-quality nest sites to high-quality nest sites rather than vice versa, and juveniles were more likely to disperse to, or remain in, the more productive of the two local populations. Parrotlets exhibited three characteristics fundamental to the IFD: habitat heterogeneity within and between local populations, reliable habitat cues to productivity, and active dispersal to sites of higher fitness.

Incubation success and habitat selection of shore-spawning kokanee Onchorhynchus nerka: effects of water level regulation and habitat characteristics.

USGS Publications Warehouse

Whitlock, Steven L.; Quist, Michael C.; Dux, Andrew M.

2014-01-01

Changes to water-level regimes have been known to restructure fish assemblages and interfere with the population dynamics of both littoral and pelagic species. The effect of altered water-level regimes on shore-spawning kokanee Oncorhynchus nerka incubation success was evaluated using a comprehensive in situ study in Lake Pend Oreille, ID, USA. Survival was not related to substrate size composition or depth, indicating that shore-spawning kokanee do not currently receive a substrate-mediated survival benefit from higher winter water levels. Substrate composition also did not differ among isobaths in the nearshore area. On average, the odds of an egg surviving to the preemergent stage were more than three times greater for sites in downwelling areas than those lacking downwelling. This study revealed that shoreline spawning habitat is not as limited as previously thought. Downwelling areas appear to contribute substantially to shore-spawning kokanee recruitment. This research illustrates the value of rigorous in situ studies both for testing potential mechanisms underlying population trends and providing insight into spawning habitat selection.

A geospatial approach to identify water quality issues for National Wildlife Refuges in Oregon and Washington

USGS Publications Warehouse

Hinck, Jo Ellen; Chojnacki, Kimberly; Finger, Susan E.; Linder, Greg; Kilbride, Kevin

2011-01-01

Many National Wildlife Refuges (Refuges) have impaired water quality resulting from historic and current land uses, upstream sources, and aerial pollutant deposition. Competing duties limit the time available for Refuge staff to identify and evaluate potential water quality issues. As a result, water quality–related issues may not be resolved until a problem has already arisen. This study developed a geospatial approach for identifying and prioritizing water quality issues affecting natural resources (including migratory birds and federally listed species) within Refuge boundaries. We assessed the location and status of streams pursuant to the Clean Water Act in relation to individual Refuges in Oregon and Washington, United States. Although twelve Refuges in Oregon (60%) and eight Refuges in Washington (40%) were assessed under the Clean Water Act, only 12% and 3% of total Refuge stream lengths were assessed, respectively. Very few assessed Refuge streams were not designated as impaired (0% in Oregon, 1% in Washington). Despite the low proportions of stream lengths assessed, most Refuges in Oregon (70%) and Washington (65%) are located in watersheds with approved total maximum daily loads. We developed summaries of current water quality issues for individual Refuges and identified large gaps for Refuge-specific water quality data and habitat utilization by sensitive species. We conclude that monitoring is warranted on many Refuges to better characterize water quality under the Clean Water Act.

Relations of water-quality constituent concentrations to surrogate measurements in the lower Platte River corridor, Nebraska, 2007 through 2011

USGS Publications Warehouse

Schaepe, Nathaniel J.; Soenksen, Philip J.; Rus, David L.

2014-01-01

The lower Platte River, Nebraska, provides drinking water, irrigation water, and in-stream flows for recreation, wildlife habitat, and vital habitats for several threatened and endangered species. The U.S. Geological Survey (USGS), in cooperation with the Lower Platte River Corridor Alliance (LPRCA) developed site-specific regression models for water-quality constituents at four sites (Shell Creek near Columbus, Nebraska [USGS site 06795500]; Elkhorn River at Waterloo, Nebr. [USGS site 06800500]; Salt Creek near Ashland, Nebr. [USGS site 06805000]; and Platte River at Louisville, Nebr. [USGS site 06805500]) in the lower Platte River corridor. The models were developed by relating continuously monitored water-quality properties (surrogate measurements) to discrete water-quality samples. These models enable existing web-based software to provide near-real-time estimates of stream-specific constituent concentrations to support natural resources management decisions. Since 2007, USGS, in cooperation with the LPRCA, has continuously monitored four water-quality properties seasonally within the lower Platte River corridor: specific conductance, water temperature, dissolved oxygen, and turbidity. During 2007 through 2011, the USGS and the Nebraska Department of Environmental Quality collected and analyzed discrete water-quality samples for nutrients, major ions, pesticides, suspended sediment, and bacteria. These datasets were used to develop the regression models. This report documents the collection of these various water-quality datasets and the development of the site-specific regression models. Regression models were developed for all four monitored sites. Constituent models for Shell Creek included nitrate plus nitrite, total phosphorus, orthophosphate, atrazine, acetochlor, suspended sediment, and Escherichia coli (E. coli) bacteria. Regression models that were developed for the Elkhorn River included nitrate plus nitrite, total Kjeldahl nitrogen, total phosphorus

Water Quality Statistics

ERIC Educational Resources Information Center

Hodgson, Ted; Andersen, Lyle; Robison-Cox, Jim; Jones, Clain

2004-01-01

Water quality experiments, especially the use of macroinvertebrates as indicators of water quality, offer an ideal context for connecting statistics and science. In the STAR program for secondary students and teachers, water quality experiments were also used as a context for teaching statistics. In this article, we trace one activity that uses…

Using Omics to Study Microbial Water Quality

EPA Science Inventory

Water is one of the most important resources of all natural ecosystems. Not only is water important to life, but it is also a habitat for a large diversity of microbial forms, in many cases carrying critical geochemical functions. In other instances, water is implicated in outbre...

South Asia transboundary water quality monitoring workshop summary report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Betsill, Jeffrey David; Littlefield, Adriane C.; Luetters, Frederick O.

2003-04-01

The Cooperative Monitoring Center (CMC) promotes collaborations among scientists and researchers in several regions as a means of achieving common regional security objectives. To promote cooperation in South Asia on environmental research, an international working group made up of participants from Bangladesh, India, Nepal, Pakistan, and the United States convened in Kathmandu, Nepal, from February 17-23,2002. The workshop was held to further develop the South Asia Transboundary Water Quality Monitoring (SATWQM) project. The project is sponsored in part by the CMC located at Sandia National Laboratories in Albuquerque, New Mexico through funding provided by the US. Department of State, Regionalmore » Environmental Affairs Office, American Embassy, Kathmandu, Nepal, and the National Nuclear Security Administration's (NNSA) Office of Nonproliferation and National Security. This report summarizes the SATWQM project, the workshop objectives, process and results. The long-term interests of the participants are to develop systems for sharing regional environmental information as a means of building confidence and improving relations among South Asian countries. The more immediate interests of the group are focused on activities that foster regional sharing of water quality data in the Ganges and Indus River basins. Issues of concern to the SATWQM network participants include studying the impacts from untreated sewage and industrial effluents, agricultural run-off, salinity increases in fresh waters, the siltation and shifting of river channels, and the environmental degradation of critical habitats such as wetlands, protected forests, and endangered aquatic species conservation areas. The workshop focused on five objectives: (1) a deepened understanding of the partner organizations involved; (2) garnering the support of additional regional and national government and non-government organizations in South Asia involved in river water quality monitoring; (3

Ecological values of shallow-water habitats: Implications for the restoration of disturbed ecosystems

USGS Publications Warehouse

Lopez, C.B.; Cloern, J.E.; Schraga, T.S.; Little, A.J.; Lucas, L.V.; Thompson, J.K.; Burau, J.R.

2006-01-01

A presumed value of shallow-habitat enhanced pelagic productivity derives from the principle that in nutrient-rich aquatic systems phytoplankton growth rate is controlled by light availability, which varies inversely with habitat depth. We measured a set of biological indicators across the gradient of habitat depth within the Sacramento-San Joaquin River Delta (California) to test the hypothesis that plankton biomass, production, and pelagic energy flow also vary systematically with habitat depth. Results showed that phytoplankton biomass and production were only weakly related to phytoplankton growth rates whereas other processes (transport, consumption) were important controls. Distribution of the invasive clam Corbicula fluminea was patchy, and heavily colonized habitats all supported low phytoplankton biomass and production and functioned as food sinks. Surplus primary production in shallow, uncolonized habitats provided potential subsidies to neighboring recipient habitats. Zooplankton in deeper habitats, where grazing exceeded phytoplankton production, were likely supported by significant fluxes of phytoplankton biomass from connected donor habitats. Our results provide three important lessons for ecosystem science: (a) in the absence of process measurements, derived indices provide valuable information to improve our mechanistic understanding of ecosystem function and to benefit adaptive management strategies; (b) the benefits of some ecosystem functions are displaced by water movements, so the value of individual habitat types can only be revealed through a regional perspective that includes connectedness among habitats; and (c) invasive species can act as overriding controls of habitat function, adding to the uncertainty of management outcomes. ?? 2006 Springer Science+Business Media, Inc.

Spatiotemporal Variation and the Role of Wildlife in Seasonal Water Quality Declines in the Chobe River, Botswana

PubMed Central

Fox, J. Tyler; Alexander, Kathleen A.

2015-01-01

Sustainable management of dryland river systems is often complicated by extreme variability of precipitation in time and space, especially across large catchment areas. Understanding regional water quality changes in southern African dryland rivers and wetland systems is especially important because of their high subsistence value and provision of ecosystem services essential to both public and animal health. We quantified seasonal variation of Escherichia coli (E. coli) and Total Suspended Solids (TSS) in the Chobe River using spatiotemporal and geostatistical modeling of water quality time series data collected along a transect spanning a mosaic of protected, urban, and developing urban land use. We found significant relationships in the dry season between E. coli concentrations and protected land use (p = 0.0009), floodplain habitat (p = 0.016), and fecal counts from elephant (p = 0.017) and other wildlife (p = 0.001). Dry season fecal loading by both elephant (p = 0.029) and other wildlife (p = 0.006) was also an important predictor of early wet season E. coli concentrations. Locations of high E. coli concentrations likewise showed close spatial agreement with estimates of wildlife biomass derived from aerial survey data. In contrast to the dry season, wet season bacterial water quality patterns were associated only with TSS (p<0.0001), suggesting storm water and sediment runoff significantly influence E. coli loads. Our data suggest that wildlife populations, and elephants in particular, can significantly modify river water quality patterns. Loss of habitat and limitation of wildlife access to perennial rivers and floodplains in water-restricted regions may increase the impact of species on surface water resources. Our findings have important implications to land use planning in southern Africa’s dryland river ecosystems. PMID:26460613

HABITAT EVALUATIONS OF AQUATIC CREATURES USING HSI MODEL CONSIDERING THE RIVER WATER TEMPERATURE

NASA Astrophysics Data System (ADS)

Nukazawa, Kei; Shiraiwa, Jun-Ichi; Kazama, So

Habitats of aquatic creatures (fishes Oncorhynchus masou masou, Plecoglossus altivelis altivel and Cyprinus carpio, fireflies Luciola cruciata and Luciola lateralis, and frogs Anura sp) in the Natori River basin located at the middle of Miyagi prefecture were evaluated dynamically using the water temperature as one of the environmental indices. HSI (Habitat Suitability Index) and WUA (Weighted Useable Area) of aquatic creatures were quantitatively calculated from numerical map information and hydrological simulation with a heat budget model. As results, general HSI of fireflies increased but of frogs decreased by adding the factor water temperature. Migration of Plecoglossus altivelis altivel could be represented by the variation of WUA.

Habitat and Biodiversity of On-Farm Water Storages: A Case Study in Southeast Queensland, Australia

NASA Astrophysics Data System (ADS)

Markwell, Kim A.; Fellows, Christine S.

2008-02-01

On-farm water storages (locally known as farm dams or farm ponds) are an important part of many agricultural landscapes, as they provide a reliable source of water for irrigation and stock. Although these waterbodies are artificially constructed and morphologically simple, there is increasing interest in their potential role as habitat for native flora and fauna. In this article, we present results from a case study which examined the habitat characteristics (such as water physical and chemical parameters, benthic metabolism, and macrophyte cover) and the macrophyte and macroinvertebrate biodiversity of eight farm ponds on four properties in the Stanley Catchment, Southeast Queensland, Australia. Each landowner was interviewed to allow a comparison of the management of the ponds with measured habitat and biodiversity characteristics, and to understand landowners’ motivations in making farm pond management decisions. The physical and chemical water characteristics of the study ponds were comparable to the limited number of Australian farm ponds described in published literature. Littoral zones supported forty-five macroinvertebrate families, with most belonging to the orders Hemiptera, Coleoptera, Odonata, and Diptera. Invertebrate community composition was strongly influenced by littoral zone macrophyte structure, with significant differences between ponds with high macrophyte cover compared to those with bare littoral zones. The importance of littoral zone macrophytes was also suggested by a significant positive relationship between invertebrate taxonomic richness and macrophyte cover. The landowners in this study demonstrated sound ecological knowledge of their farm ponds, but many had not previously acknowledged them as having high habitat value for native flora and fauna. If managed for aquatic organisms as well as reliable water sources, these artificial habitats may help to maintain regional biodiversity, particularly given the large number of farm ponds

Intradaily variability of water quality in a shallow tidal lagoon: Mechanisms and implications

USGS Publications Warehouse

Lucas, L.V.; Sereno, D.M.; Burau, J.R.; Schraga, T.S.; Lopez, C.B.; Stacey, M.T.; Parchevsky, K.V.; Parchevsky, V.P.

2006-01-01

Although surface water quality and its underlying processes vary over time scales ranging from seconds to decades, they have historically been studied at the lower (weekly to interannual) frequencies. The aim of this study was to investigate intradaily variability of three water quality parameters in a small freshwater tidal lagoon (Mildred Island, California). High frequency time series of specific conductivity, water temperature, and chlorophyll a at two locations within the habitat were analyzed in conjunction with supporting hydrodynamic, meteorological, biological, and spatial mapping data. All three constituents exhibited large amplitude intradaily (e.g., semidiurnal tidal and diurnal) oscillations, and periodicity varied across constituents, space, and time. Like other tidal embayments, this habitat is influenced by several processes with distinct periodicities including physical controls, such as tides, solar radiation, and wind, and biological controls, such as photosynthesis, growth, and grazing. A scaling approach was developed to estimate individual process contributions to the observed variability. Scaling results were generally consistent with observations and together with detailed examination of time series and time derivatives, revealed specific mechanisms underlying the observed periodicities, including interactions between the tidal variability, heating, wind, and biology. The implications for monitoring were illustrated through subsampling of the data set. This exercise demonstrated how quantities needed by scientists and managers (e.g., mean or extreme concentrations) may be misrepresented by low frequency data and how short-duration high frequency measurements can aid in the design and interpretation of temporally coarser sampling programs. The dispersive export of chlorophyll a from the habitat exhibited a fortnightly variability corresponding to the modulation of semidiurnal tidal currents with the diurnal cycle of phytoplankton variability

Wetlands receiving water treated with coagulants improve water quality by removing dissolved organic carbon and disinfection byproduct precursors.

PubMed

Hansen, Angela M; Kraus, Tamara E C; Bachand, Sandra M; Horwath, William R; Bachand, Philip A M

2018-05-01

Constructed wetlands are used worldwide to improve water quality while also providing critical wetland habitat. However, wetlands have the potential to negatively impact drinking water quality by exporting dissolved organic carbon (DOC) that upon disinfection can form disinfection byproducts (DBPs) like trihalomethanes (THMs) and haloacetic acids (HAAs). We used a replicated field-scale study located on organic rich soils in California's Sacramento-San Joaquin Delta to test whether constructed flow-through wetlands which receive water high in DOC that is treated with either iron- or aluminum-based coagulants can improve water quality with respect to DBP formation. Coagulation alone removed DOC (66-77%) and THM (67-70%) precursors, and was even more effective at removing HAA precursors (77-90%). Passage of water through the wetlands increased DOC concentrations (1.5-7.5mgL -1 ), particularly during the warmer summer months, thereby reversing some of the benefits from coagulant addition. Despite this addition, water exiting the wetlands treated with coagulants had lower DOC and DBP precursor concentrations relative to untreated source water. Benefits of the coagulation-wetland systems were greatest during the winter months (approx. 50-70% reduction in DOC and DBP precursor concentrations) when inflow water DOC concentrations were higher and wetland DOC production was lower. Optical properties suggest DOC in this system is predominantly comprised of high molecular weight, aromatic compounds, likely derived from degraded peat soils. Published by Elsevier B.V.

CONSTRUCTED WETLANDS IN SUPPORT OF RIPARIAN RESTORATION: WATER QUALITY BENEFITS AND HABITAT RESTORATION IN DELAWARE AGRICULTURAL AREAS

EPA Science Inventory

Surface water runoff from agricultural landscapes is one of the major sources of water quality impairment in the United States. With the advent of buffer strips and conservation minded tilling practices the agricultural community has made significant reductions in overland runof...

Water-Quality Data

MedlinePlus

... compound (VOC) emissions, and more. U.S. Department of Agriculture (USDA) Water Quality Information Center Databases : online databases that may be related to water and agriculture. National Park Service (NPS) Water Quality Program : NPS ...

USING WINTER FLOUNDER GROWTH RATES AND STABLE ISOTOPES TO ASSESS HABITAT QUALITY

EPA Science Inventory

We used winter flounder growth rates and stable isotopes to assess habitat quality across an anthropogenic gradient in Narragansett Bay, Rhode Island. Cages (1 m2) were placed in the Providence River which had the highest nutrient concentrations and greatest development, Prudence...

Evaluation of nekton use and habitat characteristics of restored Louisiana marsh

USGS Publications Warehouse

Thom, C.S.B.; Peyre, M.K.G.L.; Nyman, J.A.

2004-01-01

Marsh terracing and coconut fiber mats are two wetland restoration techniques implemented at Sabine National Wildlife Refuge, Louisiana, USA. Using nekton as an indicator of habitat quality, nekton community assemblages were compared between terraced, coconut-matted, unmanaged marsh (restoration goal), and open water (pre-restoration) habitats. Using a throw trap and a 3 m ?? 2 m straight seine, 192 nekton samples were collected over four dates in 2001 and 2002 at all habitats. Nekton abundance was similar at unmanaged marsh (restoration goal), coconut mat, and terrace edge, and significantly higher than at open water (pre-restoration) sites (P < 0.05). Coconut-matted habitat and unmanaged marsh edges had significantly higher numbers of benthic dependent species than terrace edges (P < 0.05), potentially because of differences in substrate. Terraced sites had lower organic matter and siltier substrate as compared to unmanaged marsh sites. At Sabine NWR, terracing increased nekton use as compared to pre-restoration conditions (open water samples) by providing marsh edge habitat, but failed to support a nekton community similar to unmanaged marsh (restoration goals) or coconut-matted sites. Future restoration projects may evaluate the combined use of coconut mats with terracing projects in order to enhance habitat for benthic dependent nekton.

Why is Habitat Restoration Near the Gulf of Mexico Essential?

EPA Pesticide Factsheets

Gulf of Mexico coastal wetlands protect coastal areas from storm damage and sea level rise, support tourism, hunting, and fishing, serve as nesting and foraging habitat for wildlife, improve water quality by removing pollutants, and minimize erosion.

Water quality in the central Columbia Plateau, Washington and Idaho, 1992-95

USGS Publications Warehouse

Williamson, Alex K.; Munn, Mark D.; Ryker, Sarah J.; Wagner, Richard J.; Ebbert, James C.; Vanderpool, Ann M.

1998-01-01

combined,' he said. 'In some of the very shallow wells that the USGS installed for monitoring purposes, we found up to seven different pesticides.' Encouraging news is that none of the newer pesticides, which break down more rapidly in the environment, were found at concentrations exceeding MCLs. Compounds that exceed drinking water standards were found in only 1 percent of the wells sampled-and those compounds have not been sold as pesticides since the mid-1980s. However, agricultural impacts on water quality go beyond the concerns for drinking water-the aquatic ecosystem of the plateau also has been significantly affected. 'Very little surface water is used for drinking water in this area, but fish are harmed by decreased stream-water quality,' said Mark Munn, the biologist for the USGS study. 'Pesticides and habitat degradation are the main concerns.' He noted that stream sampling by the USGS showed seven currently used pesticides at concentrations above the limits recommended for protecting aquatic life. Soil erosion, a long-term problem for farmers in the Palouse River Basin, transports some soil to streams, degrading habitat and carrying with it older pesticides and their breakdown products. A breakdown product of the banned insecticide DDT was found in both streambed sediment and bottom fish at concentrations exceeding guidelines for the protection of aquatic life. 'Another problem for fish habitat is excessive plant growth caused by high levels of nutrients in streams,' said Munn, who explained that these nutrients enter streams in runoff from agricultural fields and discharge from urban wastewater treatment plants. Some agricultural practices, such as allowing cattle to graze near streams, are associated with higher rates of erosion. However, increased use of BMPs may improve water quality of the plateau. The USGS study showed that use of sprinkler or drip rather than furrow irrigation has decreased soil erosion in the CBIP area. In the Palouse, erosion

[Quality Analysis and Evaluation of Anemarrhena asphodeloides Rhizome from Different Habitats].

PubMed

Li, Guo-long; Yang, Jie; Duan, Jin-ao; Liu, Hong-bo; Zhu, Zhen-hua; Qian, Da-wei; Tang, Zhi-shu

2015-06-01

tive: To compare and analyze the quality of Anemarrhena asphodeloides rhizome from different habitats. Simultaneous determination of nine components in Anemarrhena asphodeloides rhizome by UPLC-TQ/MS was performed on a Phenomenex Kinetex XB-C18 (100 mm x 2.1 mm, 1.7 μm) column with the mobile phase consisted of 0.1% formic acid-acetonitrile (gradient elution) at the flow rate of 0.4 mL/min and thecolumn temperature at 35 degrees C. Multiple reaction mode detection (MRM) in mode was used in this assay. Nine components were separated totally within 15 min. Good correlation were found between the investigated compounds concentrations and their peak areas within the test ranges with the correlation coefficient from 0.9917 to 0.9992. The average recoveries were from 98.1% to 103.7%, and the RSD of precision was in the range of 1.7% - 4.7%. 0.074-3.620 mg/g for sarsasapogenin, 0.042-2.530 mg/g for timosaponin A III, 22.1- 50.4 mg/g for timosaponon B II, 0.10 -8.28 mg/g for officinalisinin II, 0.64 -7.29 mg/g for anemarsaponin B III, 3.28 -27.40 mg/g for mangiferin, 1.83 - 7.21 mg/g for isomangiferin, 0.36 -9.25 mg/g for neomangiferin and 4.72 x 10(-5) - 1.38 x 10(-3) mg/g for baohuoside I in Anemarrhena asphodeloides rhizome from different habitats were detected. The method is rapid, accurate and can be used for quality evaluation of Anemarrhena asphodeloides rhizome. The quality of Anemarrhena asphodeloides rhizome from different habitats are different. The saponins content of Anemarrhena asphodeloides rhizome in Hebei is higher than that of the others.

Comparison of species composition and richness of fish assemblages in altered and unaltered littoral habitats

USGS Publications Warehouse

Poe, T.P.; Hatcher, C.O.; Brown, C.L.; Schloesser, D.W.

1986-01-01

Species composition and richness of fish assemblages in altered and unaltered littoral habitats in Lake St. Clair, Michigan, differed between areas. A percid-cyprinid-cyprinodontid assemblage dominated in the unaltered area, Muscamoot Bay, which has a natural shoreline (with almost no alteration due to dredging or bulkheading), high water quality, and high species richness of aquatic macrophytes. A centrarchid assemblage dominated in the altered area, Belvidere Bay, which has a bulkheaded shoreline, many dredged areas, reduced water quality due to inputs of nutrients from a nearby river, and relatively low species richness of aquatic macrophytes. Habitat factors, species richness and abundance of aquatic macrophytes, had the most influence on fish community structure in both areas. The percid-cyprinid-cyprinodontid assemblage was significantly correlated with six species of macrophytes whereas the centrarchid assemblage was significantly correlated with only four. These patterns suggest that preference for diverse habitats was higher, and tolerance to habitat alteration lower, in percid-cyprinid-cyprinodontid assemblages than in centrarchid assemblages.

Use of LANDSAT data to assess waterfowl habitat quality

NASA Technical Reports Server (NTRS)

Colwell, J. E.; Gilmer, D. S. (Principal Investigator); Work, E. A., Jr.; Rebel, D. L.; Roller, N. E. G.

1978-01-01

The author has identified the following significant results. The capability of mapping ponds over a very large area was demonstrated, with multidate, multiframe LANDSAT imagery. A small double sample of aircraft data made it possible to adjust a LANDSAT large area census. Terrain classification was improved by using multitemporal LANDSAT data. Waterfowl production was estimated, using remotely determined pond data, in conjunction with FWS estimates of breeding population. Relative waterfowl habitat quality was characterized on a section by section basis.

Using ecotechnology to address water quality and wetland habitat loss problems in the Mississippi basin: a hierarchical approach.

PubMed

Day, John W; Yañéz Arancibia, Alejandro; Mitsch, William J; Lara-Dominguez, Ana Laura; Day, Jason N; Ko, Jae-Young; Lane, Robert; Lindsey, Joel; Lomeli, David Zarate

2003-12-01

Human activities are affecting the environment at continental and global scales. An example of this is the Mississippi basin where there has been a large scale loss of wetlands and water quality deterioration over the past century. Wetland and riparian ecosystems have been isolated from rivers and streams. Wetland loss is due both to drainage and reclamation, mainly for agriculture, and to isolation from the river by levees, as in the Mississippi delta. There has been a decline in water quality due to increasing use of fertilizers, enhanced drainage and the loss of wetlands for cleaning water. Water quality has deteriorated throughout the basin and high nitrogen in the Mississippi river is causing a large area of hypoxia in the Gulf of Mexico adjacent to the Mississippi delta. Since the causes of these problems are distributed over the basin, the solution also needs to be distributed over the basin. Ecotechnology and ecological engineering offer the only ecologically sound and cost-effective method of solving these problems. Wetlands to promote nitrogen removal, mainly through denitrification but also through burial and plant uptake, offer a sound ecotechnological solution. At the level of the Mississippi basin, changes in farming practices and use of wetlands for nitrogen assimilation can reduce nitrogen levels in the River. There are additional benefits of restoration of wetland and riverine ecosystems, flood control, reduction in public health threats, and enhanced wildlife and fisheries. At the local drainage basin level, the use of river diversions in the Mississippi delta can address both problems of coastal land loss and water quality deterioration. Nitrate levels in diverted river water are rapidly reduced as water flows through coastal watersheds. At the local level, wetlands are being used to treat municipal wastewater. This is a cost-effective method, which results in improved water quality, enhanced wetland productivity and increased accretion. The

Experimental evidence for a novel mechanism driving variation in habitat quality in a food-caching bird.

PubMed

Strickland, Dan; Kielstra, Brian; Ryan Norris, D

2011-12-01

Variation in habitat quality can have important consequences for fitness and population dynamics. For food-caching species, a critical determinant of habitat quality is normally the density of storable food, but it is also possible that quality is driven by the ability of habitats to preserve food items. The food-caching gray jay (Perisoreus canadensis) occupies year-round territories in the coniferous boreal and subalpine forests of North America, but does not use conifer seed crops as a source of food. Over the last 33 years, we found that the occupancy rate of territories in Algonquin Park (ON, Canada) has declined at a higher rate in territories with a lower proportion of conifers compared to those with a higher proportion. Individuals occupying territories with a low proportion of conifers were also less likely to successfully fledge young. Using chambers to simulate food caches, we conducted an experiment to examine the hypothesis that coniferous trees are better able to preserve the perishable food items stored in summer and fall than deciduous trees due to their antibacterial and antifungal properties. Over a 1-4 month exposure period, we found that mealworms, blueberries, and raisins all lost less weight when stored on spruce and pine trees compared to deciduous and other coniferous trees. Our results indicate a novel mechanism to explain how habitat quality may influence the fitness and population dynamics of food-caching animals, and has important implications for understanding range limits for boreal breeding animals.

77 FR 32909 - Listing Endangered and Threatened Wildlife and Designating Critical Habitat; 12-Month...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-04

... revision may be warranted, in part because in our judgment specific qualities were required to explain how... Rico. (iii) Water quality to support normal growth, reproduction, development, viability, and health... areas, rather than on any specific qualities of the physical and biological features of the habitat...

Eten's Coastal Wetland, its geomorphology, water quality and biodiversity

NASA Astrophysics Data System (ADS)

Rojas Carbajal, T. V.; Bartl, K.; Loayza Muro, R.; Abad, J. D.

2017-12-01

The Eten's wetland is located in the lower part of the Chancay-Lambayeque River basin at the Peruvian coast. This wetland contains salt and fresh marshes, swamps, lagoons and an estuary which is the result of Reque River's morphodynamics. It provides a great source of totora (Schoenoplectus californicus), a native plant that is used for knitting hats which are an ancient cultural expression in Lambayeque. UNESCO recognized this wetland as one of the ecosystems with the greatest biodiversity along the South Pacific Coast, providing a unique habitat for migratory birds, such as the Peruvian Tern (Sternula lorata). This bird has been classified as endangered in 2005, by the International Union for Conservation of Nature (IUCN). When the area of a wetland is reduced, the resting point function is affected leading to loss in biodiversity due to the habitat conditions are not the same. In 2005, Lambayeque's government established an area of 1377 Ha in order to preserve wetland's ecosystem and Eten's archeological value but wet areas were reduced to 200 Ha. This reduction was promoted by agriculture, urbanization and an inadequate urban waste disposal. The scope of the study is to assess the environmental impacts that affect Eten's wetland. Preliminary results of an assessment with remote sensing indicate that: 1) the Reque River's geomorphic activity was reduced by urbanization, thus, the connection between surface water bodies has been lost, leading the drying out of ponds, 2) the conversion of wet areas to agricultural land, and 3) the natural interaction between the Reque River and the Pacific Ocean was modified due to water control upstream, resulting in a dryer wetland during the last years. Furthermore, the aquatic biodiversity of the wetland was assessed through a biomonitoring method in order to study the impact of water contamination. Four benthic macroinvertebrate Families (Hydrophilidae, Baetidae, Planorbidae and Palaemonidae) were found. The quality of the

Use of Tracer Dye Techniques Is Assessing Ground Water Availabilty and Quality in a Karst Aquifer System (Project Overview)

EPA Science Inventory

Problem: The Leetown Science Center and ~ 500 acre research facility operated by the U.S. Geological Survey (USGS) Biological Resources Division (BRD) In West Virginia investigates the health and habitats of aquatic species. Large quantities of good quality cold water are needed ...

Biology as an integrated component of the U.S. Geological Survey's National Water-Quality Assessment Program

USGS Publications Warehouse

Meador, Michael R.; Gurtz, Martin E.

1994-01-01

The U.S. Geological Survey?s (USGS) National Water-Quality Assessment (NAWQA) Program is designed to integrate chemical, physical, and biological data to assess the status of and trends in the Nation?s water quality at local, regional, and national levels. The Program consists of 60 study units (major river basins and large parts of aquifers) located throughout the Nation (fig. 1). Data are collected at stream, river, and ground-water sites that represent the Nation?s mix of major natural and human factors that influence water quality. Biological data are collected from streams and rivers, and include (1) fish and other aquatic organisms whose tissues are analyzed for a wide array of chemical contaminants; (2) characterizations of algal, benthic invertebrate, and fish communities; and (3) characterizations of vegetation growing in streams and along streambanks. These biological data are collected in conjunction with physical (streamflow, characterizations of instream, bank, and flood-plain habitats) and chemical data.

Water Quality

Treesearch

Terry L. Maluk; Thomas A. Abrahamsen; Richard H. Day

2000-01-01

The U.S. Geological Survey (USGS) began the National Water-Quality Assessment Program (NAWQA) in 1991 to describe the status of and long-term trends in the quality of the Nation's surface- and ground-water resources. The study of the Santee River Basin and Coastal Drainages began in 1994 and included about 60800 km2 in North Carolina and...

Influence of forest and rangeland management on anadromous fish habitat in Western North America: planning forest roads to protect salmonid habitat.

Treesearch

Carlton S. Yee; Terry D. Roelofs

1980-01-01

The construction and existence of forest roads, landings, and decking areas may have significant effects on anadromous fish habitat . Major effects discussed in this paper are increased sedimentation from transportation networks, the hindrance to fish migration of drainage structures, and possible changes in water quality from road stabilization additives. Guidelines...

Organic Matter in Rivers: The Crossroads between Climate and Water Quality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davisson, M L

2001-04-27

All surface waters in the world contain dissolved organic matter and its concentration depends on climate and vegetation. Dissolved organic carbon (DOC) is ten times higher in wetlands and swamps than in surface water of arctic, alpine, or arid climate. Climates of high ecosystem productivity (i.e., tropics) typically have soils with low organic carbon storage, but drain high dissolved organic loads to rivers. Regions with lower productivity (e.g. grasslands) typically have high soil carbon storage while adjacent rivers have high DOC contents. Most DOC in a free-flowing river is derived from leaching vegetation and soil organic matter, whereas in dammedmore » rivers algae may comprise a significant portion. Water chemistry and oxygen-18 abundance of river water, along with radiocarbon and carbon-13 isotope abundance measurements of DOC were used to distinguish water and water quality sources in the Missouri River watershed. Drinking water for the City of St. Louis incorporates these different sources, and its water quality depends mostly on whether runoff is derived from the upper or the lower watershed, with the lower watershed contributing water with the highest DOC. During drinking water chlorination, DOC forms carcinogenic by-products in proportion to the amount of DOC present. This has recently led the USEPA to propose federal regulation standards. Restoration of natural riparian habitat such as wetlands will likely increase DOC concentrations in river water.« less

Suitability of ponds formed by strip mining in eastern Oklahoma for public water supply, aquatic life, waterfowl habitat, livestock watering, irrigation, and recreation

USGS Publications Warehouse

Parkhurst, Renee S.

1994-01-01

A study of coal ponds formed by strip mining in eastern Oklahoma included 25 ponds formed by strip mining from the Croweburg, McAlester, and Iron Post coal seams and 6 noncoal-mine ponds in the coal-mining area. Water-quality samples were collected in the spring and summer of 1985 to determine the suitability of the ponds for public water supply, aquatic life, waterfowl habitat, livestock watering, irrigation, and recreation. The rationale for water-quality criteria and the criteria used for each proposed use are discussed. The ponds were grouped by the coal seam mined or as noncoal-mine ponds, and the number of ponds from each group containing water that exceeded a given criterion is noted. Water in many of the ponds can be used for public water supplies if other sources are not available. Water in most of these ponds exceeds one or more secondary standards, but meets all primary standards. Water samples from the epilimnion (shallow strata as determined by temperature) of six ponds exceeded one or more primary standards, which are criteria protective of human health. Water samples from five of eight Iron Post ponds exceeded the selenium criterion. Water samples from all 31 ponds exceeded one or more secondary standards, which are for the protection of human welfare. The criteria most often exceeded were iron, manganese, dissolved solids, and sulfate, which are secondary standards. The criteria for iron and manganese were exceeded more frequently in the noncoal-mine ponds, whereas ponds formed by strip mining were more likely to exceed the criteria for dissolved solids and sulfate. The ponds are marginally suited for aquatic life. Water samples from the epilimnion of 18 ponds exceeded criteria protective of aquatic life. The criteria for mercury and iron were exceeded most often. Little difference was detected between mine ponds and noncoal-mine ponds. Dissolved oxygen concentrations in the hypolimnion (deepest strata) of all the ponds were less than the minimum

Distinct Soil Microbial Communities in habitats of differing soil water balance on the Tibetan Plateau

PubMed Central

Li, Yuntao; Adams, Jonathan; Shi, Yu; Wang, Hao; He, Jin-Sheng; Chu, Haiyan

2017-01-01

Global change may be a severe threat to natural and agricultural systems, partly through its effects in altering soil biota and processes, due to changes in water balance. We studied the potential influence of changing soil water balance on soil biota by comparing existing sites along a natural water balance gradient in the Qinghai-Tibetan Plateau. In this study, the community structure of bacteria, archaea and eukaryotes differed between the different soil water conditions. Soil moisture was the strongest predictor of bacterial and eukaryotic community structure, whereas C/N ratio was the key factor predicting variation in the archaeal community. Bacterial and eukaryotic diversity was quite stable among different soil water availability, but archaeal diversity was dramatically different between the habitats. The auxotype of methanogens also varied significantly among different habitats. The co-varying soil properties among habitats shaped the community structure of soil microbes, with archaea being particularly sensitive in terms of community composition, diversity and functional groups. Bacterial and archaeal phylogenetic community turnover was mainly driven by deterministic processes while stochastic processes had stronger effects on eukaryotic phylogenetic community turnover. Our work provides insight into microbial community, functional group and phylogenetic turnover under different soil conditions in low-latitude alpine ecosystem. PMID:28401921

Distinct Soil Microbial Communities in habitats of differing soil water balance on the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Li, Yuntao; Adams, Jonathan; Shi, Yu; Wang, Hao; He, Jin-Sheng; Chu, Haiyan

2017-04-01

Global change may be a severe threat to natural and agricultural systems, partly through its effects in altering soil biota and processes, due to changes in water balance. We studied the potential influence of changing soil water balance on soil biota by comparing existing sites along a natural water balance gradient in the Qinghai-Tibetan Plateau. In this study, the community structure of bacteria, archaea and eukaryotes differed between the different soil water conditions. Soil moisture was the strongest predictor of bacterial and eukaryotic community structure, whereas C/N ratio was the key factor predicting variation in the archaeal community. Bacterial and eukaryotic diversity was quite stable among different soil water availability, but archaeal diversity was dramatically different between the habitats. The auxotype of methanogens also varied significantly among different habitats. The co-varying soil properties among habitats shaped the community structure of soil microbes, with archaea being particularly sensitive in terms of community composition, diversity and functional groups. Bacterial and archaeal phylogenetic community turnover was mainly driven by deterministic processes while stochastic processes had stronger effects on eukaryotic phylogenetic community turnover. Our work provides insight into microbial community, functional group and phylogenetic turnover under different soil conditions in low-latitude alpine ecosystem.

Duck Valley Habitat Enhancement and Protection, 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dodson, Guy; Pero, Vincent

The Duck Valley Indian Reservations' Habitat Enhancement project is an ongoing project designed to enhance and protect the critical riparian areas, natural springs, and native fish spawning areas on the Reservation. The project was begun in 1997 with the hiring of a fisheries biologist and the creation of a new department for the Tribes. The project's goals are to protect and enhance the springs, Owyhee River, its tributaries, and to develop a database that can be used by other fisheries professionals which includes information on water quality and fish composition, health, abundance, and genetic makeup. One habitat portion of themore » project is a focus on protection the numerous springs that provide clean, cool water to the Owyhee River. This will be accomplished through enclosure fences of the spring heads and water troughs to provide clean cool drinking water for wildlife and livestock. Another habitat portion of the project involves protecting headwater areas of streams with native fish populations. This is accomplished through enclosure fencing and riparian plantings on any eroded or degraded banks in the enclosure area. Finally, we monitor and evaluate the areas protected and enhanced. This is accomplished through biological sampling for temperature, Oxygen, sedimentation, and measurements of water depth, bank height and undercut, and width of stream. With the habitat and biological indices we will be able to evaluate how well protective measures are doing, and where to focus future efforts.« less

Water quality changes and their relation to fishery resources in the upper Mississippi River

USGS Publications Warehouse

Holland Bartels, L. E.; Becker, C.D.; Neitzel, D.A.

1992-01-01

Despite a long history of human manipulation, the most dramatic changes in the upper Mississippi River occurred in the 1930s with construction of a lock and dam system to facilitate the commercial transport of commodities. In 1988, barge traffic through the system ranged from 7,500 tows per year at Lock and Dam 26 (near Alton, Illinois) to 1, 118 at Lock and Dam 1 (in Minneapolis/St. Paul). The tow-teed dam system created a diversity of lentic habitats, but it also changed the stage and sediment transport characteristics of the river. The principal fishery-related water quality issues of this modified system concern the effects of sediments and toxic contaminants from nonpoint sources. Between 42 and 99% of the streams in the five states of the Mississippi River basin fail to fully support their designated uses because of pollution. primarily from nonpoint sources (e.g., 73% in Minnesota, 98% in Wisconsin, 75% in Illinois). Annual sediment inputs into the upper Mississippi River basin range from minimal in the upper reaches to about 210.000 kg/hectare in the lower reaches. This sediment results in significant losses of fishery habitat. Although bnly 5 to 9% of the total open water area of many pools had been lost by 1975, those losses were in highly productive side channel and backwater areas. Under existing conditions, a loss of an additional 22 to 49% of existing lentic habitats is predicted within 50 years. In addition, toxic contaminants transported along with fine sediments have become more available to stream biota. Although significant interagency efforts have been made to evaluate the impacts on biotic communities of the river. present data are inadequate to determine how changes in water quality affect the fisheries. This lack of data undermines our ability to judge the success of programs initiated to control pollution from point and nonpoint sources.

Assessment of Habitat and Streamflow Requirements for Habitat Protection, Usquepaug-Queen River, Rhode Island, 1999-2000

USGS Publications Warehouse

Armstrong, David S.; Parker, Gene W.

2003-01-01

The relations among stream habitat and hydrologic conditions were investigated in the Usquepaug?Queen River Basin in southern Rhode Island. Habitats were assessed at 13 sites on the mainstem and tributaries from July 1999 to September 2000. Channel types are predominantly low-gradient glides, pools, and runs that have a sand and gravel streambed and a forest or shrub riparian zone. Along the stream margins,overhanging brush, undercut banks supported by roots, and downed trees create cover; within the channel, submerged aquatic vegetation and woody debris create cover. These habitat features decrease in quality and availability with declining streamflows, and features along stream margins generally become unavailable once streamflows drop to the point at which water recedes from the stream banks. Riffles are less common, but were identified as critical habitat areas because they are among the first to exhibit habitat losses or become unavailable during low-flow periods. Stream-temperature data were collected at eight sites during summer 2000 to indicate the suitability of those reaches for cold-water fish communities. Data indicate stream temperatures provide suitable habitat for cold-water species in the Fisherville and Locke Brook tributaries and in the mainstem Queen River downstream of the confluence with Fisherville Brook. Stream temperatures in the Usquepaug River downstream from Glen Rock Reservoir are about 6?F warmer than in the Queen River upstream from the impoundment. These warmer temperatures may make habitat in the Usquepaug River marginal for cold-water species. Fish-community composition was determined from samples collected at seven sites on tributaries and at three sites on the mainstem Usquepaug?Queen River. Classification of the fish into habitat-use groups and comparison to target fish communities developed for the Quinebaug and Ipswich Rivers indicated that the sampled reaches of the Usquepaug?Queen River contained most of the riverine fish

Environmental quality of transitional waters: the lagoon of Venice case study.

PubMed

Micheletti, C; Gottardo, S; Critto, A; Chiarato, S; Marcomini, A

2011-01-01

The health status of European aquatic environments, including transitional waters such as coastal lagoons, is regulated by the Water Framework Directive (WFD), which requires the classification of the water bodies' environmental quality and the achievement of a good ecological status by 2015. In the Venice lagoon, a transitional water body located in the northeastern part of Italy, the achievement of a good ecological status is hampered by several anthropogenic and natural pressures, such as sediment and water chemical contamination, and sediment erosion. In order to evaluate the lagoon's environmental quality according to the WFD (i.e. 5 quality classes, from High to Bad), an integrated Weight-of-Evidence methodology was developed and applied to classify the quality of the lagoon water bodies, integrating biological, physico-chemical, chemical, ecotoxicological, and hydromorphological data (i.e. Lines of Evidence, LOE). The quality assessment was carried out in two lagoon habitat typologies (previously defined on the basis of morphological, sediment, and hydrodynamic characteristics) which were selected taking into account the ecological gradient from sea to land, and the differences in anthropogenic pressure and contamination levels. The LOE classification was carried out by using indicators scored by comparing site specific conditions to reference conditions measured in lagoon reference sites, or provided by local, national or European regulations (e.g. Environmental Quality Standards, EQS, for chemicals). Finally, the overall quality status for each water body was calculated by a probabilistic approach, i.e. by reporting the final result as the frequency distribution of quality classes. The developed procedure was applied by using data and information concerning selected LOE and collected from monitoring programs and research studies carried out in the last 15 years in the lagoon of Venice. A set of sampling stations characterized by spatially and temporally

Characterization of habitat and biological communities at fixed sites in the Great Salt Lake basins, Utah, Idaho, and Wyoming, water years 1999-2001

USGS Publications Warehouse

Albano, Christine M.; Giddings, Elise M.P.

2007-01-01

Habitat and biological communities were sampled at 10 sites in the Great Salt Lake Basins as part of the U.S. Geological Survey National Water-Quality Assessment program to assess the occurrence and distribution of biological organisms in relation to environmental conditions. Sites were distributed among the Bear River, Weber River, and Utah Lake/Jordan River basins and were selected to represent stream conditions in different land-use settings that are prominent within the basins, including agriculture, rangeland, urban, and forested.High-gradient streams had more diverse habitat conditions with larger substrates and more dynamic flow characteristics and were typically lower in discharge than low-gradient streams, which had a higher degree of siltation and lacked variability in geomorphic channel characteristics, which may account for differences in habitat. Habitat scores were higher at high-gradient sites with high percentages of forested land use within their basins. Sources and causes of stream habitat impairment included effects from channel modifications, siltation, and riparian land use. Effects of hydrologic modifications were evident at many sites.Algal sites where colder temperatures, less nutrient enrichment, and forest and rangeland uses dominated the basins contained communities that were more sensitive to organic pollution, siltation, dissolved oxygen, and salinity than sites that were warmer, had higher degrees of nutrient enrichment, and were affected by agriculture and urban land uses. Sites that had high inputs of solar radiation and generally were associated with agricultural land use supported the greatest number of algal species.Invertebrate samples collected from sites where riffles were the richest-targeted habitat differed in species composition and pollution tolerance from those collected at sites that did not have riffle habitat (nonriffle sites), where samples were collected in depositional areas, woody snags, or macrophyte beds

Assessment of Shallow-Water Habitat Availability in Modified Dike Structures, Lower Missouri River, 2004

USGS Publications Warehouse

Jacobson, Robert B.; Elliott, Caroline M.; Johnson, Harold E.

2004-01-01

This study documented the effects of wing-dike notching on the availabilit of shallow water habitat in the Lower Missouri River. Five wing dikes were surveyed in late May 2004 after they were notched in early May as part of shallow-water habitat (SWH) rehabilitation activities undertaken by the U.S. Army Corps of Engineers. Surveys included high-resolution hydroacoustic depth, velocity, and substrate mapping. Relations of bottom elevations within the wing dike fields to index discharges and water-surface elevations indicate that little habitat meeting the SWH definition was created immediately following notching. This result is not unexpected, as significant geomorphic adjustment may require large flow events. Depth, velocity, and substrate measurements in the post-rehabilitation time period provide baseline data for monitoring ongoing changes. Differences in elevation and substrate were noted at all sites. Most dike fields showed substantial aggradation and replacement of mud substrate with sandier sediment, although the changes did not result in increased availability of SWH at the index discharge. It is not known how much of the elevation and substrate changes can be attributed directly to notching and how much would result from normal sediment transport variation.

Influence of habitat quality, population size, patch size, and connectivity on patch-occupancy dynamics of the middle spotted woodpecker.

PubMed

Robles, Hugo; Ciudad, Carlos

2012-04-01

Despite extensive research on the effects of habitat fragmentation, the ecological mechanisms underlying colonization and extinction processes are poorly known, but knowledge of these mechanisms is essential to understanding the distribution and persistence of populations in fragmented habitats. We examined these mechanisms through multiseason occupancy models that elucidated patch-occupancy dynamics of Middle Spotted Woodpeckers (Dendrocopos medius) in northwestern Spain. The number of occupied patches was relatively stable from 2000 to 2010 (15-24% of 101 patches occupied every year) because extinction was balanced by recolonization. Larger and higher quality patches (i.e., higher density of oaks >37 cm dbh [diameter at breast height]) were more likely to be occupied. Habitat quality (i.e., density of large oaks) explained more variation in patch colonization and extinction than did patch size and connectivity, which were both weakly associated with probabilities of turnover. Patches of higher quality were more likely to be colonized than patches of lower quality. Populations in high-quality patches were less likely to become extinct. In addition, extinction in a patch was strongly associated with local population size but not with patch size, which means the latter may not be a good surrogate of population size in assessments of extinction probability. Our results suggest that habitat quality may be a primary driver of patch-occupancy dynamics and may increase the accuracy of models of population survival. We encourage comparisons of competing models that assess occupancy, colonization, and extinction probabilities in a single analytical framework (e.g., dynamic occupancy models) so as to shed light on the association of habitat quality and patch geometry with colonization and extinction processes in different settings and species. ©2012 Society for Conservation Biology.

Water Quality Criteria

EPA Pesticide Factsheets

EPA develops water quality criteria based on the latest scientific knowledge to protect human health and aquatic life. This information serves as guidance to states and tribes in adopting water quality standards.

Effects of hurricanes Katrina and Rita on Louisiana black bear habitat

USGS Publications Warehouse

Clark, Joseph D.; Murrow, Jennifer L.

2012-01-01

The Louisiana black bear (Ursus americanus luteolus) is comprised of 3 subpopulations, each being small, geographically isolated, and vulnerable to extinction. Hurricanes Katrina and Rita struck the Louisiana and Mississippi coasts in 2005, potentially altering habitat occupied by this federally threatened subspecies. We used data collected on radio-telemetered bears from 1993 to 1995 and pre-hurricane landscape data to develop a habitat model based on the Mahalanobis distance (D2) statistic. We then applied that model to post-hurricane landscape data where the telemetry data were collected (i.e., occupied study area) and where bear range expansion might occur (i.e., unoccupied study area) to quantify habitat loss or gain. The D2 model indicated that quality bear habitat was associated with areas of high mast-producing forest density, low water body density, and moderate forest patchiness. Cross-validation and testing on an independent data set in central Louisiana indicated that prediction and transferability of the model were good. Suitable bear habitat decreased from 348 to 345 km2 (0.9%) within the occupied study area and decreased from 34,383 to 33,891 km2 (1.4%) in the unoccupied study area following the hurricanes. Our analysis indicated that bear habitat was not significantly degraded by the hurricanes, although changes that could have occurred on a microhabitat level would be more difficult to detect at the resolution we used. We suggest that managers continue to monitor the possible long-term effects of these hurricanes (e.g., vegetation changes from flooding, introduction of toxic chemicals, or water quality changes).

Assessments of habitat preferences and quality depend on spatial scale and metrics of fitness

USGS Publications Warehouse

Chalfoun, A.D.; Martin, T.E.

2007-01-01

1. Identifying the habitat features that influence habitat selection and enhance fitness is critical for effective management. Ecological theory predicts that habitat choices should be adaptive, such that fitness is enhanced in preferred habitats. However, studies often report mismatches between habitat preferences and fitness consequences across a wide variety of taxa based on a single spatial scale and/or a single fitness component. 2. We examined whether habitat preferences of a declining shrub steppe songbird, the Brewer's sparrow Spizella breweri, were adaptive when multiple reproductive fitness components and spatial scales (landscape, territory and nest patch) were considered. 3. We found that birds settled earlier and in higher densities, together suggesting preference, in landscapes with greater shrub cover and height. Yet nest success was not higher in these landscapes; nest success was primarily determined by nest predation rates. Thus landscape preferences did not match nest predation risk. Instead, nestling mass and the number of nesting attempts per pair increased in preferred landscapes, raising the possibility that landscapes were chosen on the basis of food availability rather than safe nest sites. 4. At smaller spatial scales (territory and nest patch), birds preferred different habitat features (i.e. density of potential nest shrubs) that reduced nest predation risk and allowed greater season-long reproductive success. 5. Synthesis and applications. Habitat preferences reflect the integration of multiple environmental factors across multiple spatial scales, and individuals may have more than one option for optimizing fitness via habitat selection strategies. Assessments of habitat quality for management prescriptions should ideally include analysis of diverse fitness consequences across multiple ecologically relevant spatial scales. ?? 2007 The Authors.

The relationships of seabird assemblages to physical habitat features in Pacific equatorial waters during spring 1984-1991

USGS Publications Warehouse

Ribic, C.A.; Ainley, D.G.

1997-01-01

The association of seabird species groups with physical habitat was investigated in the eastern tropical Pacific Ocean, far from any breeding colonies. This avoided birds that commute between colony and feeding habitat, behaviour that confuses associations with specific water types and current systems. Seabirds were counted on duplicate tracks in the eastern tropical Pacific each spring from 1984-1991. On each cruise, seabird habitat was measured on the basis of six factors and focused on three species groups: (A) black-winged petrel and white-winged petrel, (B) Juan Fernandez petrel, wedge-tailed shearwater, and sooty tern, and (C) Leach's storm-petrel and wedge-rumped storm-petrel. Group A was associated with the South Equatorial Current, particularly in cooler waters (median of 26.4??C); both petrel species followed this assemblage association with current. Group B was associated with areas characterized by deep thermoclines (median of 60 m) and low salinities (median of 34.33). Within Group B, two of the three species' responses were consistent with the group pattern; Juan Fernandez petrel differed by occurring more often where thermocline slopes were steep (median of 9.8 deg C m-1). Group C was not associated with any physical habitat variable. This was due to species in the group being associated with different habitats: Leach's storm-petrel with the tropical and equatorial surface water masses and wedge-rumped storm-petrel with waters having shallower thermocline depths (median of 22 m). Overall, two of the three assemblages appeared to be associated with physical habitat during spring with consistency among the species in the group. An association with thermocline depth may indicate that productivity was an important predictor of assemblage presence.

Invasion by non-native brook trout in Panther Creek, Idaho: Roles of habitat quality, biotic resistance, and connectivity to source habitats

Treesearch

Joseph R. Benjamin; Jason B. Dunham; Matthew R. Dare

2007-01-01

Theoretical models and empirical evidence suggest that the invasion of nonnative species in freshwaters is facilitated through the interaction of three factors: habitat quality, biotic resistance, and connectivity. We measured variables that represented each factor to determine which were associated with the occurrence of nonnative brook trout Salvelinus...

Using Omics to Study Microbial Water Quality - abstract

EPA Science Inventory

Water is one of the most important resources of all natural ecosystems. Not only is water important to life, but it is also a habitat for a large diversity of microbial forms, in many cases carrying critical geochemical functions. In other instances, water is implicated in outbre...

Spawning habitat unsuitability: an impediment to cisco rehabilitation in Lake Michigan?

USGS Publications Warehouse

Madenjian, Charles P.; Rutherford, Edward S.; Blouin, Marc A.; Sederberg, Bryan J.; Elliott, Jeff R.

2011-01-01

The cisco Coregonus artedi was one of the most important native prey fishes in Lake Michigan and in the other four Laurentian Great Lakes. Most of the cisco spawning in Lake Michigan was believed to have occurred in Green Bay. The cisco population in Lake Michigan collapsed during the 1950s, and the collapse was attributed in part to habitat degradation within Green Bay. Winter water quality surveys of lower Green Bay during the 1950s and 1960s indicated that the bottom dissolved oxygen (DO) concentration was less than 2 mg/L throughout much of the lower bay, and most cisco eggs would not successfully hatch at such low DO concentrations. To determine present-day spawning habitat suitability in lower Green Bay, we compared cisco egg survival in lower Green Bay with survival at a reference site (St. Marys River, Michigan–Ontario) during 2009. We also conducted winter water quality surveys in lower Green Bay and the St. Marys River during 2009 and 2010. Cisco egg survival in lower Green Bay averaged 65.3%, which was remarkably similar to and not significantly different from the mean at the St. Marys River site (64.0%). Moreover, the lowest bottom DO concentrations recorded during the winter surveys were 11.2 mg/L in lower Green Bay and 12.7 mg/L in the St. Marys River. These relatively high DO concentrations would not be expected to have any negative effect on cisco egg survival. We conclude that winter water quality conditions in lower Green Bay were suitable for successful hatching of cisco eggs and that water quality during the egg incubation period did not represent an impediment to cisco rehabilitation in Lake Michigan. Our approach to determining spawning habitat suitability for coregonids would be applicable to other aquatic systems.

Detroit River habitat inventory

USGS Publications Warehouse

Manny, Bruce A.

2003-01-01

This inventory complements a previous survey of habitat in Ontario waters of the Detroit River (OMNR,1993). It is a starting point for balanced and sustained use of the river for natural resource conservation and economic development. The objectives of the inventory were to: (1) locate candidate sites for protection and restoration of fish and wildlife habitat in Michigan waters of the Detroit River; (2) describe the ownership and size of each site, as well as its potential for habitat protection and restoration; and (3) subjectively assess the extent to which existing habitat along the river is productive of fish and wildlife and protected from land uses that have degraded or destroyed such habitat.

RELATIONS OF FISH AND SHELLFISH DISTRIBUTIONS TO HABITAT AND WATER QUALITY IN THE MOBILE BAY ESTUARY, USA

EPA Science Inventory

The Mobile Bay estuary provides rich habitat for many fish and shellfish, including those identified as economically and ecologically important. The National Estuary Program has focused on restoration of degraded estuarine habitat on which these species depend. To support this ...

A framework for modeling anthropogenic impacts on waterbird habitats: addressing future uncertainty in conservation planning

USGS Publications Warehouse

Matchett, Elliott L.; Fleskes, Joseph P.; Young, Charles A.; Purkey, David R.

2015-01-01

The amount and quality of natural resources available for terrestrial and aquatic wildlife habitats are expected to decrease throughout the world in areas that are intensively managed for urban and agricultural uses. Changes in climate and management of increasingly limited water supplies may further impact water resources essential for sustaining habitats. In this report, we document adapting a Water Evaluation and Planning (WEAP) system model for the Central Valley of California. We demonstrate using this adapted model (WEAP-CVwh) to evaluate impacts produced from plausible future scenarios on agricultural and wetland habitats used by waterbirds and other wildlife. Processed output from WEAP-CVwh indicated varying levels of impact caused by projected climate, urbanization, and water supply management in scenarios used to exemplify this approach. Among scenarios, the NCAR-CCSM3 A2 climate projection had a greater impact than the CNRM-CM3 B1 climate projection, whereas expansive urbanization had a greater impact than strategic urbanization, on annual availability of waterbird habitat. Scenarios including extensive rice-idling or substantial instream flow requirements on important water supply sources produced large impacts on annual availability of waterbird habitat. In the year corresponding with the greatest habitat reduction for each scenario, the scenario including instream flow requirements resulted in the greatest decrease in habitats throughout all months of the wintering period relative to other scenarios. This approach provides a new and useful tool for habitat conservation planning in the Central Valley and a model to guide similar research investigations aiming to inform conservation, management, and restoration of important wildlife habitats.

Environmental Protection: Federal Incentives Could Help Promote Land Use That Protects Air and Water Quality

DTIC Science & Technology

2001-10-01

can over stimulate algae and plant growth, which can degrade coral reefs and important fish spawning habitats. In 2001, the U.S. Geological Survey... Oceanic and Atmospheric Administration NPDES National Pollutant Discharge Elimination System PAH polycyclic aromatic hydrocarbons SIP state...as a significant cause of coastal water quality problems, the acidification of streams and lakes, and the toxic contamination of fish and the birds

Optimizing water depth for wetland-dependent wildlife could increase wetland restoration success, water efficiency, and water security

USGS Publications Warehouse

Nadeau, Christopher P.; Conway, Courtney J.

2015-01-01

Securing water for wetland restoration efforts will be increasingly difficult as human populations demand more water and climate change alters the hydrologic cycle. Minimizing water use at a restoration site could help justify water use to competing users, thereby increasing future water security. Moreover, optimizing water depth for focal species will increase habitat quality and the probability that the restoration is successful. We developed and validated spatial habitat models to optimize water depth within wetland restoration projects along the lower Colorado River intended to benefit California black rails (Laterallus jamaicensis coturniculus). We observed a 358% increase in the number of black rails detected in the year after manipulating water depth to maximize the amount of predicted black rail habitat in two wetlands. The number of black rail detections in our restoration sites was similar to those at our reference site. Implementing the optimal water depth in each wetland decreased water use while simultaneously increasing habitat suitability for the focal species. Our results also provide experimental confirmation of past descriptive accounts of black rail habitat preferences and provide explicit water depth recommendations for future wetland restoration efforts for this species of conservation concern; maintain surface water depths between saturated soil and 100 mm. Efforts to optimize water depth in restored wetlands around the world would likely increase the success of wetland restorations for the focal species while simultaneously minimizing and justifying water use.

Use of remote-sensing techniques to survey the physical habitat of large rivers

USGS Publications Warehouse

Edsall, Thomas A.; Behrendt, Thomas E.; Cholwek, Gary; Frey, Jeffery W.; Kennedy, Gregory W.; Smith, Stephen B.; Edsall, Thomas A.; Behrendt, Thomas E.; Cholwek, Gary; Frey, Jeffrey W.; Kennedy, Gregory W.; Smith, Stephen B.

1997-01-01

Remote-sensing techniques that can be used to quantitatively characterize the physical habitat in large rivers in the United States where traditional survey approaches typically used in small- and medium-sized streams and rivers would be ineffective or impossible to apply. The state-of-the-art remote-sensing technologies that we discuss here include side-scan sonar, RoxAnn, acoustic Doppler current profiler, remotely operated vehicles and camera systems, global positioning systems, and laser level survey systems. The use of these technologies will permit the collection of information needed to create computer visualizations and hard copy maps and generate quantitative databases that can be used in real-time mode in the field to characterize the physical habitat at a study location of interest and to guide the distribution of sampling effort needed to address other habitat-related study objectives. This report augments habitat sampling and characterization guidance provided by Meador et al. (1993) and is intended for use primarily by U.S. Geological Survey National Water Quality Assessment program managers and scientists who are documenting water quality in streams and rivers of the United States.

78 FR 20252 - Water Quality Standards; Withdrawal of Certain Federal Water Quality Criteria Applicable to...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-04

... aquatic life water quality criteria applicable to waters of New Jersey, Puerto Rico, and California's San Francisco Bay. In 1992, EPA promulgated the National Toxics Rule or NTR to establish numeric water quality... Water Quality Standards; Withdrawal of Certain Federal Water Quality Criteria Applicable to California...

Summary of surface-water quality, ground-water quality, and water withdrawals for the Spirit Lake Reservation, North Dakota

USGS Publications Warehouse

Vining, Kevin C.; Cates, Steven W.

2006-01-01

Available surface-water quality, ground-water quality, and water-withdrawal data for the Spirit Lake Reservation were summarized. The data were collected intermittently from 1948 through 2004 and were compiled from U.S. Geological Survey databases, North Dakota State Water Commission databases, and Spirit Lake Nation tribal agencies. Although the quality of surface water on the reservation generally is satisfactory, no surface-water sources are used for consumable water supplies. Ground water on the reservation is of sufficient quality for most uses. The Tokio and Warwick aquifers have better overall water quality than the Spiritwood aquifer. Water from the Spiritwood aquifer is used mostly for irrigation. The Warwick aquifer provides most of the consumable water for the reservation and for the city of Devils Lake. Annual water withdrawals from the Warwick aquifer by the Spirit Lake Nation ranged from 71 million gallons to 122 million gallons during 2000-04.

Quality control in public participation assessments of water quality: the OPAL Water Survey.

PubMed

Rose, N L; Turner, S D; Goldsmith, B; Gosling, L; Davidson, T A

2016-07-22

Public participation in scientific data collection is a rapidly expanding field. In water quality surveys, the involvement of the public, usually as trained volunteers, generally includes the identification of aquatic invertebrates to a broad taxonomic level. However, quality assurance is often not addressed and remains a key concern for the acceptance of publicly-generated water quality data. The Open Air Laboratories (OPAL) Water Survey, launched in May 2010, aimed to encourage interest and participation in water science by developing a 'low-barrier-to-entry' water quality survey. During 2010, over 3000 participant-selected lakes and ponds were surveyed making this the largest public participation lake and pond survey undertaken to date in the UK. But the OPAL approach of using untrained volunteers and largely anonymous data submission exacerbates quality control concerns. A number of approaches were used in order to address data quality issues including: sensitivity analysis to determine differences due to operator, sampling effort and duration; direct comparisons of identification between participants and experienced scientists; the use of a self-assessment identification quiz; the use of multiple participant surveys to assess data variability at single sites over short periods of time; comparison of survey techniques with other measurement variables and with other metrics generally considered more accurate. These quality control approaches were then used to screen the OPAL Water Survey data to generate a more robust dataset. The OPAL Water Survey results provide a regional and national assessment of water quality as well as a first national picture of water clarity (as suspended solids concentrations). Less than 10 % of lakes and ponds surveyed were 'poor' quality while 26.8 % were in the highest water quality band. It is likely that there will always be a question mark over untrained volunteer generated data simply because quality assurance is uncertain

U.S. Geological Survey Catskill/Delaware Water-Quality Network: Water-Quality Report Water Year 2006

USGS Publications Warehouse

McHale, Michael R.; Siemion, Jason

2010-01-01

The U.S. Geological Survey operates a 60-station streamgaging network in the New York City Catskill/Delaware Water Supply System. Water-quality samples were collected at 13 of the stations in the Catskill/Delaware streamgaging network to provide resource managers with water-quality and water-quantity data from the water-supply system that supplies about 85 percent of the water needed by the more than 9 million residents of New York City. This report summarizes water-quality data collected at those 13 stations plus one additional station operated as a part of the U.S. Environmental Protection Agency's Regional Long-Term Monitoring Network for the 2006 water year (October 1, 2005 to September 30, 2006). An average of 62 water-quality samples were collected at each station during the 2006 water year, including grab samples collected every other week and storm samples collected with automated samplers. On average, 8 storms were sampled at each station during the 2006 water year. The 2006 calendar year was the second warmest on record and the summer of 2006 was the wettest on record for the northeastern United States. A large storm on June 26-28, 2006, caused extensive flooding in the western part of the network where record peak flows were measured at several watersheds.

Marine environmental risk assessment and acute water quality criterion for pentachlorophenol in coastal waters.

PubMed

Beiras, R; Tato, T

2018-04-07

Pentachlorophenol (PCP) is a organochlorine biocide that, unlike most other organochlorines, is still in use as timber preservative. Its water solubility, high toxicity, bioaccumulation potential, and the concentrations reported in estuarine waters (up to 0.1 µg L -1 ) indicate it may pose a risk in coastal environments. Aquatic environrmental regulations are commonly based on standard freshwater organisms that may not represent the sensitivity of marine species. The present study consists of a water quality criteira reevalutation of PCP in coastal waters based on toxicity tests conducted recording sensitive endpoints of marine species representative of coastal ecosystems, following QA/QC standard procedures. The toxicity thresholds (EC 10 ) found were 4.69 µg L -1 for Paracentrotus lividus sea-urchin embryos, 6.47 µg L -1 for Mytilus galloprovincialis mussel larvae, and 78.4 µg L -1 for Isochrysis galbana cells. Therefore, there is only one order of magnitude between the predicted no-effect concentration (PNEC) for early life stages of bivalves and echinoderms and the maximum concentrations actually recorded in coastal water, which yields a remarkable risk quotient for PCP in these highly productive marine habitats. In addition, we have reviewed the ecotoxicological data on PCP toxicity on marine species representative of the main systematic groups, from algae to chordates, and derived a probabilistic acute saltwater quality criterion of 2.66 µg L -1 , intended to protect 95% of the marine species. Lack of adequate protection for marine ecosystems in some current PCP national guidelines has been identified.

Water Quality Assessment for Deep-water Channel area of Guangzhou Port based on the Comprehensive Water Quality Identification Index Method

NASA Astrophysics Data System (ADS)

Chen, Yi

2018-03-01

The comprehensive water quality identification index method is able to assess the general water quality situation comprehensively and represent the water quality classification; water environment functional zone achieves pollution level and standard objectively and systematically. This paper selects 3 representative zones along deep-water channel of Guangzhou port and applies comprehensive water quality identification index method to calculate sea water quality monitoring data for different selected zones from year 2006 to 2014, in order to investigate the temporal variation of water quality along deep-water channel of Guangzhou port. The comprehensive water quality level from north to south presents an increased trend, and the water quality of the three zones in 2014 is much better than in 2006. This paper puts forward environmental protection measurements and suggestions for Pearl River Estuary, provides data support and theoretical basis for studied sea area pollution prevention and control.

Continuous water-quality and suspended-sediment transport monitoring in the San Francisco Bay, California, water years 2011–13

USGS Publications Warehouse

Buchanan, Paul A.; Downing-Kunz, Maureen; Schoellhamer, David H.; Shellenbarger, Gregory; Weidich, Kurt

2014-01-01

The U.S. Geological Survey (USGS) monitors water quality and suspended-sediment transport in the San Francisco Bay. The San Francisco Bay area is home to millions of people, and the bay teems with both resident and migratory wildlife, plants, and fish. Fresh water mixes with salt water in the bay, which is subject both to riverine and marine (tides, waves, influx of salt water) influences. To understand this environment, the USGS, along with its partners, has been monitoring the bay’s waters continuously since 1988. Several water-quality variables are of particular importance to State and Federal resource managers and are monitored at key locations throughout the bay. Salinity, which indicates the relative mixing of fresh and ocean waters in the bay, is derived from specific conductance measurements. Water temperature, along with salinity, affects the density of water, which causes gravity driven circulation patterns and stratification in the water column. Turbidity is measured using light-scattering from suspended solids in water, and is used as a surrogate for suspended-sediment concentration (SSC). Suspended sediment often carries adsorbed contaminants; attenuates sunlight in the water column; deposits on tidal marsh and intertidal mudflats, which can help sustain these habitats as sea level rises; and deposits in ports and shipping channels, which can necessitate dredging. Dissolved oxygen, which is essential to a healthy ecosystem, is a fundamental indicator of water quality, and its concentration is affected by water temperature, salinity, ecosystem metabolism, tidal currents, and wind. Tidal currents in the bay reverse four times a day, and wind direction and intensity typically change on a daily cycle: consequently, salinity, water temperature, suspendedsediment concentration, and dissolvedoxygen concentration vary spatially and temporally throughout the bay, and continuous measurements are needed to observe these changes. The purpose of this fact sheet

Habitat quality of the coastal southeastern Bering Sea for juvenile flatfishes from the relationships between diet, body condition and prey availability

NASA Astrophysics Data System (ADS)

Yeung, Cynthia; Yang, Mei-Sun

2017-01-01

The distribution and body condition of juvenile northern rock sole (NRS), Lepidopsetta polyxystra, and yellowfin sole (YFS), Limanda aspera, were studied in relation to prey availability across the coastal shelf at the Alaska Peninsula boundary of the eastern Bering Sea (EBS) to assess spatial variability in habitat quality. Juveniles of ≤ 20 cm and adults of ≥ 30 cm total length were collected from bottom trawl catch samples at stations located 10 to 120 km from the Alaska Peninsula coast, and in bottom depths of 28 to 85 m. Stomach contents and stable isotopes of carbon and nitrogen from muscle tissue were analyzed to describe diet composition. The quantity and quality of prey did not significantly affect the distribution of juvenile NRS and YFS. Spatial mismatch between the diet composition and the infauna prey assemblage suggested that prey availability was not limiting across the area, allowing fish to select for prey, presumably to maximize net energy gain. The body condition of juvenile NRS was higher in the eastern section of the area (Bristol Bay) - where they shared spatial and dietary niches with juvenile YFS, than in the west section (Unimak Island) where juvenile YFS were largely absent. A difference in body condition suggests that habitat quality may be higher in Bristol Bay. For NRS, stomach contents and stable isotopes in muscle tissue indicated an ontogenetic diet shift from amphipods to polychaetes from juvenile to adult stages. In contrast, for YFS, amphipods seemed to remain the primary prey and polychaetes the least important prey from juvenile to adult stage. Given that the high prey availability found in this south coastal area of EBS extends to areas across the EBS shelf, favorable habitat for juvenile flatfishes should be extensive. However, much of this potential juvenile habitat is underutilized by NRS, which were mainly limited to Bristol Bay and the Alaska Peninsula, whereas YFS did extend north over 500 km from Bristol Bay along

Application of Aquatic Insects (Ephemeroptera, Plecoptera And Trichoptera) In Water Quality Assessment of Malaysian Headwater

PubMed Central

Ab Hamid, Suhaila; Md Rawi, Che Salmah

2017-01-01

The Ephemeroptera, Plecoptera and Trichoptera (EPT) community structure and the specific sensitivity of certain EPT genera were found to be influenced by water parameters in the rivers of Gunung Jerai Forest Reserve (GJFR) in the north of peninsular Malaysia. The scores of EPT taxa richness of >10 in all rivers indicated all rivers’ habitats were non-impacted, having good water quality coinciding with Class I and Class II of Malaysian water quality index (WQI) classification of potable water. The abundance of EPT was very high in Teroi River (9,661 individuals) but diversity was lower (22 genera) than Tupah River which was highly diverse (28 genera) but lower in abundance (4,263 individuals). The lowest abundance and moderate diversity was recorded from Batu Hampar River (25 genera). Baetis spp. and Thalerosphyrus spp., Neoperla spp. and Cheumatopsyche spp. were the most common genera found. Classification for all rivers using EPT taxa Richness Index and WQI gave different category of water quality, respectively. The WQI classified Tupah and Batu Hampar rivers into Class II and Teroi River (Class I) was two classes above the classification of the EPT taxa Richness Index. PMID:28890767

Application of Aquatic Insects (Ephemeroptera, Plecoptera And Trichoptera) In Water Quality Assessment of Malaysian Headwater.

PubMed

Ab Hamid, Suhaila; Md Rawi, Che Salmah

2017-07-01

The Ephemeroptera, Plecoptera and Trichoptera (EPT) community structure and the specific sensitivity of certain EPT genera were found to be influenced by water parameters in the rivers of Gunung Jerai Forest Reserve (GJFR) in the north of peninsular Malaysia. The scores of EPT taxa richness of >10 in all rivers indicated all rivers' habitats were non-impacted, having good water quality coinciding with Class I and Class II of Malaysian water quality index (WQI) classification of potable water. The abundance of EPT was very high in Teroi River (9,661 individuals) but diversity was lower (22 genera) than Tupah River which was highly diverse (28 genera) but lower in abundance (4,263 individuals). The lowest abundance and moderate diversity was recorded from Batu Hampar River (25 genera). Baetis spp. and Thalerosphyrus spp., Neoperla spp. and Cheumatopsyche spp. were the most common genera found. Classification for all rivers using EPT taxa Richness Index and WQI gave different category of water quality, respectively. The WQI classified Tupah and Batu Hampar rivers into Class II and Teroi River (Class I) was two classes above the classification of the EPT taxa Richness Index.

Monitoring and assessment of water health quality in the Tajan River, Iran using physicochemical, fish and macroinvertebrates indices.

PubMed

Aazami, Jaber; Esmaili-Sari, Abbas; Abdoli, Asghar; Sohrabi, Hormoz; Van den Brink, Paul J

2015-01-01

Nowadays, aquatic organisms are used as bio-indicators to assess ecological water quality in western regions, but have hardly been used in an Iranian context. We, therefore, evaluated the suitability of several indices to assess the water quality for an Iranian case study. Measured data on biotic (fish and macroinvertebrates) and abiotic elements (28 physicochemical and habitat parameters), were used to calculate six indices for assessment of water quality and the impact of human activities in the Tajan river, Iran. GIS, uni- and multivariate statistics were used to assess the correlations between biological and environmental endpoints. The results showed that ecological condition and water quality were reduced from up- to downstream. The reduced water quality was revealed by the biotic indices better than the abiotic ones which were linked to a variety of ecological water quality scales. The fish index showed a strong relationship with long-term database of physicochemical parameters (12 years (94%)), whereas macroinvertebrates index is more correlated with short-term data (76%). Meanwhile, the biotic and abiotic elements in this study were also classified well by PCA. Pulp and wood plants and sand mining are indicated to have the most negative effects on the river ecosystem.

Linking Changes in Management and Riparian Physical Functionality to Water Quality and Aquatic Habitat

EPA Science Inventory

Wildlife and aquatic habitats are dependent on the development of riparian area management strategies. Land management strategies consider certain basic ecological and economic relationships. These relationships are functions of riparian and te rrestrial ecosystems, which include...

Characteristic sediment and water column chlorophyll-a in the sea cucumber’s Paracaudina sp. habitat on the Kenjeran Water, Surabaya

NASA Astrophysics Data System (ADS)

Widianingsih, W.; Zaenuri, M.; Anggoro, S.; Kusumaningrum, H. P.; Hartati, R.

2018-03-01

The study of characteristic sediment and water column chlorophyll-a has an important role in the sea cucumber habitat. Sediment chlorophyll-a represents a productivity primer for the benthic community. This research has a purpose to investigate characteristic sediment and water column chlorophyll-a on the Kenjeran water, Surabaya. Sediment samples were collected by the ekman grab for analysis, grain size and nutrient. The sample for sediment chlorophyll-a was taken by core sampler. The water samples were taken with Nansen Bottles. According to the research result, the values of sediment chlorophyll-a at station 10, 11 and 12 were higher than the other stations. In contrast, the value of chlorophyll-a in the column water had almost the same value for each station. The sediment chlorophyll-a value on clay and silt sediment type was higher than the fine sand and coarse sediment type. The suitable habitat characteristic for Paracaudina sp. was clay and silt sediment with sediment chlorophyll concentration ranging from 347.82 mg·m-2 to 1135.52 mg·m-2.

EVALUATING AN URBAN STREAM RESTORATION PROGRAM FOR IMPROVING WATER QUALITY, IN-STREAM HABITAT, AND BANK STABILITY

EPA Science Inventory

To improve water quality in urban and suburban areas, watershed managers often incorporate best management practices (BMPs) to reduce the quantity of runoff, as well as minimize pollutants and other stressors contained in stormwater runoff. It is well known that land use practice...

Water Resources Data, Georgia, 2002--Volume 1: Continuous water-level, streamflow, water-quality data, and periodic water-quality data, Water Year 2002

USGS Publications Warehouse

Hickey, Andrew C.; Kerestes, John F.; McCallum, Brian E.

2002-01-01

Water resources data for the 2002 water year for Georgia consists of records of stage, discharge, and water quality of streams; and the stage and contents of lakes and reservoirs published in two volumes in a digital format on a CD-ROM. Volume one of this report contains water resources data for Georgia collected during water year 2002, including: discharge records of 154 gaging stations; stage for 165 gaging stations; precipitation for 105 gaging stations; information for 20 lakes and reservoirs; continuous water-quality records for 27 stations; the annual peak stage and annual peak discharge for 72 crest-stage partial-record stations; and miscellaneous streamflow measurements at 50 stations, and miscellaneous water-quality data recorded by the NAWQA program in Georgia. Volume two of this report contains water resources data for Georgia collected during calendar year 2002, including continuous water-level records of 155 ground-water wells and periodic records at 132 water-quality stations. These data represent that part of the National Water Data System collected by the U.S. Geological Survey and cooperating State and Federal agencies in Georgia.

Water Resources Data, Georgia, 2003, Volume 1: Continuous water-level, streamflow, water-quality data, and periodic water-quality data, Water Year 2003

USGS Publications Warehouse

Hickey, Andrew C.; Kerestes, John F.; McCallum, Brian E.

2004-01-01

Water resources data for the 2003 water year for Georgia consists of records of stage, discharge, and water quality of streams; and the stage and contents of lakes and reservoirs published in two volumes in a digital format on a CD-ROM. Volume one of this report contains water resources data for Georgia collected during water year 2003, including: discharge records of 163 gaging stations; stage for 187 gaging stations; precipitation for 140 gaging stations; information for 19 lakes and reservoirs; continuous water-quality records for 40 stations; the annual peak stage and annual peak discharge for 65 crest-stage partial-record stations; and miscellaneous streamflow measurements at 36 stations, and miscellaneous water-quality data at 162 stations in Georgia. Volume two of this report contains water resources data for Georgia collected during calendar year 2003, including continuous water-level records of 156 ground-water wells and periodic records at 130 water-quality stations. These data represent that part of the National Water Data System collected by the U.S. Geological Survey and cooperating State and Federal agencies in Georgia.

Larval habitat choice in still water and flume flows by the opportunistic bivalve Mulinia lateralis

NASA Astrophysics Data System (ADS)

Grassle, Judith P.; Snelgrove, Paul V. R.; Butman, Cheryl Ann

Competent pediveligers of the coot clam Mulinia lateralis (Say) clearly preferred an organically-rich mud over abiotic glass beads in 24-h flume experiments, and often demonstrated the same choice in still-water experiments. We hypothesize that peediveligers with characteristic helical swimming paths above the bottom can exercise habitat choice in both still water nad flow, but that the limited swimming ambits of physiologically older periveligers require near-bottom flows to move the larvae between sediment patches so that they can exercise habitat choice. Although M. lateralis larvae are planktotrophic, their ability to delay metamorphosis in the absence of a preferred sediment cue is limited to about five days, a shorter time than the lecithotrophi larvae of the opportunistic polychaete species, Capitella spp. I and II. Field distributions of all three opportunistic species may result, at least in part, from active habitat selection for high-organic sediments by settling larvae.

What's in Your Water? An Educator's Guide to Water Quality.

ERIC Educational Resources Information Center

Constabile, Kerry, Comp.; Craig, Heidi, Comp.; O'Laughlin, Laura, Comp.; Reiss, Anne Bei, Comp.; Spencer, Liz, Comp.

This guide provides basic information on the Clean Water Act, watersheds, and testing for water quality, and presents four science lesson plans on water quality. Activities include: (1) "Introduction to Water Quality"; (2) "Chemical Water Quality Testing"; (3) "Biological Water Quality Testing"; and (4) "What Can We Do?" (YDS)

Differences in gas exchange contribute to habitat differentiation in Iberian columbines from contrasting light and water environments.

PubMed

Jaime, R; Serichol, C; Alcántara, J M; Rey, P J

2014-03-01

During photosynthesis, respiration and transpiration, gas exchange occurs via the stomata and so plants face a trade-off between maximising photosynthesis while minimising transpiration (expressed as water use efficiency, WUE). The ability to cope with this trade-off and regulate photosynthetic rate and stomatal conductance may be related to niche differentiation between closely related species. The present study explored this as a possible mechanism for habitat differentiation in Iberian columbines. The roles of irradiance and water stress were assessed to determine niche differentiation among Iberian columbines via distinct gas exchange processes. Photosynthesis-irradiance curves (P-I curves) were obtained for four taxa, and common garden experiments were conducted to examine plant responses to water and irradiance stress, by measuring instantaneous gas exchange and plant performance. Gas exchange was also measured in ten individuals using two to four field populations per taxon. The taxa had different P-I curves and gas exchange in the field. At the species level, water stress and irradiance explained habitat differentiation. Within each species, a combination of irradiance and water stress explained the between-subspecies habitat differentiation. Despite differences in stomatal conductance and CO2 assimilation, taxa did not have different WUE under field conditions, which suggests that the environment equally modifies photosynthesis and transpiration. The P-I curves, gas exchange in the field and plant responses to experimental water and irradiance stresses support the hypothesis that habitat differentiation is associated with differences among taxa in tolerance to abiotic stress mediated by distinct gas exchange responses. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

Seasonal and diel habitat selection by bluegills in a shallow natural lake

USGS Publications Warehouse

Paukert, C.P.; Willis, D.W.

2002-01-01

Habitat use by bluegill Lepomis macrochirus may be dictated by the avoidance of predators and the availability of prey. Previous work suggests that bluegills large enough to avoid predators will select habitats based on foraging profitability. However, these studies focused on smaller fish (200 mm total length [TL]) bluegills in a shallow (mean depth = 1.2 m), 332-ha, natural lake (Pelican Lake, Nebraska) with both emergent and submergent vegetation distributed throughout. A total of 78 bluegills (200-273 mm TL) were implanted with radio transmitters and relocated daily for 6 d per month (April-September); up to 20 of the tagged fish were relocated every 2 h for a 24-h period once each month. Regardless of diel period, bluegills used open-water, emergent vegetation, submergent vegetation, and mixed emergent - submergent vegetation habitat types in similar proportions. During April, June, and July, male bluegills positively selected emergent vegetation, whereas female bluegills showed no vegetation selection preference during any month. Throughout the study period, bluegills never avoided open-water habitats, suggesting that larger individuals may continue to use open-water habitats in proportion to their availability. In addition, emergent vegetation appeared to be important, particularly for male bluegills. Although the mechanism for the positive selection of emergent vegetation by males was unclear, the protection or enhancement of such habitats may facilitate the preservation of quality bluegill populations in shallow lakes.

The use of plant community attributes to detect habitat quality in coastal environments

PubMed Central

Del Vecchio, Silvia; Slaviero, Antonio; Fantinato, Edy; Buffa, Gabriella

2016-01-01

The monitoring of biodiversity has mainly focused on the species level. However, researchers and land managers are making increasing use of complementary assessment tools that address higher levels of biological organization, i.e. communities, habitats and ecosystems. Recently, a variety of frameworks have been proposed for assessing the conservation status of communities or ecosystems. Among the various criteria proposed, all the protocols suggest considering (i) spatial aspects (range and area), and (ii) qualitative aspects of specific structures and functions. However, changes to ecological function are difficult to quantify and many protocols end up by using qualitative criteria. The aim of this work was to test the efficacy of some plant community attributes for the detection of vegetation quality in sand dune plant communities. We chose plant community attributes that either help to distinguish a habitat from others (diagnostic components) or play a significant role in habitat function and persistence over time. We used a diachronic approach by contrasting up-to-date vegetation data with data from previous studies carried out within the same areas. Changes in species composition were detected through detrended correspondence analyses (detrended correspondence analyses), Multi-Response Permutation Procedures and Indicator Species Analysis, while structural changes were analyzed by comparing species richness, total species cover, ecological groups of species and growth forms through null models. Ecological groups such as native focal species and aliens, and growth forms proved their efficacy in discriminating between habitat types and in describing their changes over time. The approach used in this study may provide an instrument for the assessment of plant community quality that can be applied to other coastal ecosystems. PMID:27255516

WATER QUALITY CRITERIA DOCUMENTS

EPA Science Inventory

Background

Water quality standards and criteria are the foundation for a wide range of programs under the Clean Water Act. Specifically, under section 304(a)(1) of the Clean Water Act it requires EPA to develop criteria for water quality that accurately re...

Low-flow water-quality characterization of the Gore Creek watershed, upper Colorado River basin, Colorado, August 1996

USGS Publications Warehouse

Wynn, Kirby H.; Spahr, Norman E.

1998-01-01

sampling is needed to determine the distribution and sources of water-quality constituents at one point in time. In August 1996, a low-flow synoptic sampling for analyses of water-quality properties and constituents at sites in the Gore Creek watershed was done by the U.S. Geological Survey, in cooperation with the Town of Vail, Eagle River Water and Sanitation District, Upper Eagle River Water Authority, and Northwest Colorado Council of Governments, to evaluate the water quality of Gore Creek. The August low-flow period can be important from water-quality and stream ecology perspectives. There is less water available to dilute any contaminants entering the streams, and stream temperatures are highest during August. Physical habitat for aquatic plants and animals is smaller than during most other times of the year. To address these more extreme water-quality and ecological conditions, the synoptic sampling was conducted during the summer low-flow period. Specific objectives of this sampling included: 1. Establish a current data set representing the spatial characteristics of low-flow water-quality conditions in the Gore Creek watershed, and 2. Develop some understanding of land-use and water-quality relations in the watershed. This fact sheet presents hydrologic background information and an analysis of general water-quality properties and constituents, trace elements, and nutrients collected in water samples during low-flow synoptic sampling of the Gore Creek watershed. The U.S. Geological Survey also is conducting a study of the algae and macroinvertebrate communities and physical habitat of streams in the Gore Creek watershed during low flow. This study is designed to provide information about land-use and stream ecology relations in the watershed.

Water quality.

USGS Publications Warehouse

Steele, T.D.; Stefan, H.G.

1979-01-01

Significant contributions in the broad area of water quality over the quadrennium 1975-78 are highlighted. This summare is concerned primarily with physical and chemical aspects of water quality. The diversity of subject areas within the topic heading and the large volume of published research results necessitated the selection of representative contributions. Over 400 references are cited which are believed to be indicative of general trends in research and of the more important developments during this period.- from Authors

Water quality monitoring and data collection in the Mississippi sound

USGS Publications Warehouse

Runner, Michael S.; Creswell, R.

2002-01-01

The United States Geological Survey and the Mississippi Department of Marine Resources are collecting data on the quality of the water in the Mississippi Sound of the Gulf of Mexico, and streamflow data for its tributaries. The U.S. Geological Survey is collecting continuous water-level data, continuous and discrete water-temperature data, continuous and discrete specific-conductance data, as well as chloride and salinity samples at two locations in the Mississippi Sound and three Corps of Engineers tidal gages. Continuous-discharge data are also being collected at two additional stations on tributaries. The Mississippi Department of Marine Resources collects water samples at 169 locations in the Gulf of Mexico. Between 1800 and 2000 samples are collected annually which are analyzed for turbidity and fecal coliform bacteria. The continuous data are made available real-time through the internet and are being used in conjunction with streamflow data, weather data, and sampling data for the monitoring and management of the oyster reefs, the shrimp fishery and other marine species and their habitats.

An index of reservoir habitat impairment

USGS Publications Warehouse

Miranda, L.E.; Hunt, K.M.

2011-01-01

Fish habitat impairment resulting from natural and anthropogenic watershed and in-lake processes has in many cases reduced the ability of reservoirs to sustain native fish assemblages and fisheries quality. Rehabilitation of impaired reservoirs is hindered by the lack of a method suitable for scoring impairment status. To address this limitation, an index of reservoir habitat impairment (IRHI) was developed by merging 14 metrics descriptive of common impairment sources, with each metric scored from 0 (no impairment) to 5 (high impairment) by fisheries scientists with local knowledge. With a plausible range of 5 to 25, distribution of the IRHI scores ranged from 5 to 23 over 482 randomly selected reservoirs dispersed throughout the USA. The IRHI reflected five impairment factors including siltation, structural habitat, eutrophication, water regime, and aquatic plants. The factors were weakly related to key reservoir characteristics including reservoir area, depth, age, and usetype, suggesting that common reservoir descriptors are poor predictors of fish habitat impairment. The IRHI is rapid and inexpensive to calculate, provides an easily understood measure of the overall habitat impairment, allows comparison of reservoirs and therefore prioritization of restoration activities, and may be used to track restoration progress. The major limitation of the IRHI is its reliance on unstandardized professional judgment rather than standardized empirical measurements. ?? 2010 US Government.

Quality-Assurance Plan for Water-Quality Activities of the U.S. Geological Survey Montana Water Science Center

USGS Publications Warehouse

Lambing, John H.

2006-01-01

In accordance with guidelines set forth by the Office of Water Quality in the Water Resources Discipline of the U.S. Geological Survey (USGS), a quality-assurance plan has been created for use by the USGS Montana Water Science Center in conducting water-quality activities. This quality-assurance plan documents the standards, policies, and procedures used by the USGS Montana Water Science Center for activities related to the collection, processing, storage, analysis, and publication of water-quality data. The policies and procedures presented in this quality-assurance plan for water-quality activities complement the quality-assurance plans for surface-water and ground-water activities and suspended-sediment analysis.

Accelerate Water Quality Improvement

EPA Pesticide Factsheets

EPA is committed to accelerating water quality improvement and minimizing negative impacts to aquatic life from contaminants and other stressors in the Bay Delta Estuary by working with California Water Boards to strengthen water quality improvement plans.

Landscape habitat suitability index software

Treesearch

William D. Dijak; Chadwick D. Rittenhouse; Michael A. Larson; Frank R. III Thompson; Joshua J. Millspaugh

2007-01-01

Habitat suitability index (HSI) models are traditionally used to evaluate habitat quality for wildlife at a local scale. Rarely have such models incorporated spatial relationships of habitat components. We introduce Landscape HSImodels, a new Microsoft Windowst (Microsoft, Redmond, WA)-based program that incorporates local habitat as well as landscape-scale attributes...

Quantifying changes in flooding and habitats in the Tonle Sap Lake (Cambodia) caused by water infrastructure development and climate change in the Mekong Basin.

PubMed

Arias, Mauricio E; Cochrane, Thomas A; Piman, Thanapon; Kummu, Matti; Caruso, Brian S; Killeen, Timothy J

2012-12-15

The economic value of the Tonle Sap Lake Floodplain to Cambodia is arguably among the highest provided to a nation by a single ecosystem around the world. Nonetheless, the Mekong River Basin is changing rapidly due to accelerating water infrastructure development (hydropower, irrigation, flood control, and water supply) and climate change, bringing considerable modifications to the flood pulse of the Tonle Sap Lake in the foreseeable future. This paper presents research conducted to determine how the historical flooding regime, together with human action, influenced landscape patterns of habitats in the Tonle Sap Lake, and how these habitats might shift as a result of hydrological changes. Maps of water depth, annual flood duration, and flood frequency were created for recent historical hydrological conditions and for simulated future scenarios of water infrastructure development and climate change. Relationships were then established between the historical flood maps and land cover, and these were subsequently applied to assess potential changes to habitat cover in future decades. Five habitat groups were clearly distinguishable based on flood regime, physiognomic patterns, and human activity: (1) Open water, flooded for 12 months in an average hydrological year; (2) Gallery forest, with flood duration of 9 months annually; (3) Seasonally flooded habitats, flooded 5-8 months and dominated by shrublands and grasslands; (4) transitional habitats, flooded 1-5 months and dominated by abandoned agricultural fields, receding rice/floating rice, and lowland grasslands; and (5) Rainfed habitats, flooded up to 1 month and consisting mainly of wet season rice fields and village crops. It was found that water infrastructure development could increase the area of open water (+18 to +21%) and the area of rainfed habitats (+10 to +14%), while reducing the area covered with seasonally flooded habitats (-13 to -22%) and gallery forest (-75 to -83%). Habitat cover shifts as a