Hyperspectral recognition of processing tomato early blight based on GA and SVM

NASA Astrophysics Data System (ADS)

Yin, Xiaojun; Zhao, SiFeng

2013-03-01

Processing tomato early blight seriously affect the yield and quality of its.Determine the leaves spectrum of different disease severity level of processing tomato early blight.We take the sensitive bands of processing tomato early blight as support vector machine input vector.Through the genetic algorithm(GA) to optimize the parameters of SVM, We could recognize different disease severity level of processing tomato early blight.The result show:the sensitive bands of different disease severity levels of processing tomato early blight is 628-643nm and 689-692nm.The sensitive bands are as the GA and SVM input vector.We get the best penalty parameters is 0.129 and kernel function parameters is 3.479.We make classification training and testing by polynomial nuclear,radial basis function nuclear,Sigmoid nuclear.The best classification model is the radial basis function nuclear of SVM. Training accuracy is 84.615%,Testing accuracy is 80.681%.It is combined GA and SVM to achieve multi-classification of processing tomato early blight.It is provided the technical support of prediction processing tomato early blight occurrence, development and diffusion rule in large areas.

Phomopsis Blight of Junipers

Treesearch

Glenn W. Peterson; C. S. Jr. Hidges

1982-01-01

Phomopsis blight has been a serious problem for more than 75 years in nurseries producing juniper seedlings and grafts. Phomopsis juniperovora Hahn, the fungus causing this disease, is widespread in the United States.

PGPR and entomopathogenic fungus bioformulation for the synchronous management of leaffolder pest and sheath blight disease of rice.

PubMed

Karthiba, Loganathan; Saveetha, Kandasamy; Suresh, Seetharaman; Raguchander, Thiruvengadam; Saravanakumar, Duraisamy; Samiyappan, Ramasamy

2010-05-01

The biological control of plant pests and diseases using a single organism has been reported to give inconsistent and poor performance. To improve the efficacy, bioformulations were developed possessing mixtures of bioagents. Bioformulations combining Pseudomonas fluorescens Migula strains Pf1 and AH1 and Beauveria bassiana (Balsamo) Vuill. isolate B2 were developed and tested for their efficacy against leaffolder pest and sheath blight disease on rice under glasshouse and field conditions. The combination of Pf1, AH1 and B2 effectively reduced the incidence of leaffolder insect and sheath blight disease on rice compared with other treatments. An in vitro assay of leaffolder preference to rice leaf tissues treated with Pf1 + AH1 + B2 biformulation showed variation from normal growth and development of leaffolder larvae. Plants treated with the Pf1 + AH1 + B2 combination showed a greater accumulation of enzymes, lipoxygenase and chitinase activity against leaffolder insect compared with other treatments. Similarly, the plants showed a higher accumulation of defence enzymes, peroxidase and polyphenol oxidase activity against sheath blight pathogen in Pf1 + AH1 + B2 treatment compared with the untreated control. The bioformulation mixture attracted the natural enemy population of leaffolder under field conditions. In addition, a significant increase in rice grain yield was observed in Pf1 + AH1 + B2 treatment compared with the untreated control. The combination of P. fluorescens strains and B. bassiana isolate effectively reduced the incidence of leaffolder insect and sheath blight disease on rice plants and showed the possibility of controlling both pest and disease using a single bioformulation.

Boxwood blight: an ongoing threat to ornamental and native boxwood

USDA-ARS?s Scientific Manuscript database

Boxwood blight is an emerging disease of ornamental and native boxwood plants in the family Buxaceae. First documented in the 1990s at a single location in England, the disease is now reported throughout Europe, Asia, New Zealand, and North America. To address the growing concern over boxwood blight...

Chitosan-induced immunity in Camellia sinensis (L.) O. Kuntze against blister blight disease is mediated by nitric-oxide.

PubMed

Chandra, Swarnendu; Chakraborty, Nilanjan; Panda, Koustubh; Acharya, Krishnendu

2017-06-01

Blister blight disease, caused by an obligate biotrophic fungal pathogen, Exobasidium vexans Massee is posing a serious threat for tea cultivation in Asia. As the use of chemical pesticides on tea leaves substantially increases the toxic risks of tea consumption, serious attempts are being made to control such pathogens by boosting the intrinsic natural defense responses against invading pathogens in tea plants. In this study, the nature and durability of resistance offered by chitosan and the possible mechanism of chitosan-induced defense induction in Camellia sinensis (L.) O. Kuntze plants against blister blight disease were investigated. Foliar application of 0.01% chitosan solution at 15 days interval not only reduced the blister blight incidence for two seasons, but also maintained the induced expressions of different defense related enzymes and total phenol content compared to the control. Defense responses induced by chitosan were found to be down regulated under nitric oxide (NO) deficient conditions in vivo, indicating that the observed chitosan-induced resistance is probably activated via NO signaling. Such role of NO in host defense response was further established by application of the NO donor, sodium nitroprusside (SNP), which produced similar defense responses accomplished through chitosan treatment. Taken together, our results suggest that increased production of NO in chitosan-treated tea plants may play a critical role in triggering the innate defense responses effective against plant pathogens, including that causing the blister blight disease. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Rapid identification of candidate genes for resistance to tomato late blight disease using next-generation sequencing technologies

PubMed Central

Arafa, Ramadan A.; Rakha, Mohamed T.; Kamel, Said M.

2017-01-01

Tomato late blight caused by Phytophthora infestans (Mont.) de Bary, also known as the Irish famine pathogen, is one of the most destructive plant diseases. Wild relatives of tomato possess useful resistance genes against this disease, and could therefore be used in breeding to improve cultivated varieties. In the genome of a wild relative of tomato, Solanum habrochaites accession LA1777, we identified a new quantitative trait locus for resistance against blight caused by an aggressive Egyptian isolate of P. infestans. Using double-digest restriction site–associated DNA sequencing (ddRAD-Seq) technology, we determined 6,514 genome-wide SNP genotypes of an F2 population derived from an interspecific cross. Subsequent association analysis of genotypes and phenotypes of the mapping population revealed that a 6.8 Mb genome region on chromosome 6 was a candidate locus for disease resistance. Whole-genome resequencing analysis revealed that 298 genes in this region potentially had functional differences between the parental lines. Among of them, two genes with missense mutations, Solyc06g071810.1 and Solyc06g083640.3, were considered to be potential candidates for disease resistance. SNP and SSR markers linking to this region can be used in marker-assisted selection in future breeding programs for late blight disease, including introgression of new genetic loci from wild species. In addition, the approach developed in this study provides a model for identification of other genes for attractive agronomical traits. PMID:29253902

Long-term impact of shoot blight disease on red pine saplings

Treesearch

Linda M. Haugen; Michael E. Ostry

2013-01-01

Damage from Sirococcus and Diplodia shoot blights of red pine is widespread and periodically severe in the Lake States. An outbreak of shoot blight occurred in red pine sapling plantations across northern Wisconsin, northern Minnesota, and the Upper Peninsula of Michigan in 1993. We established monitoring plots in red pine sapling...

Erwinia amylovora pyrC mutant causes fire blight despite pyrimidine auxotrophy.

PubMed

Ramos, L S; Sinn, J P; Lehman, B L; Pfeufer, E E; Peter, K A; McNellis, T W

2015-06-01

Erwinia amylovora bacteria cause fire blight disease, which affects apple and pear production worldwide. The Erw. amylovora pyrC gene encodes a predicted dihydroorotase enzyme involved in pyrimidine biosynthesis. Here, we discovered that the Erw. amylovora pyrC244::Tn5 mutant was a uracil auxotroph. Unexpectedly, the Erw. amylovora pyrC244::Tn5 mutant grew as well as the wild-type in detached immature apple and pear fruits. Fire blight symptoms caused by the pyrC244::Tn5 mutant in immature apple and pear fruits were attenuated compared to those caused by the wild-type. The pyrC244::Tn5 mutant also caused severe fire blight symptoms in apple tree shoots. A plasmid-borne copy of the wild-type pyrC gene restored prototrophy and symptom induction in apple and pear fruit to the pyrC244::Tn5 mutant. These results suggest that Erw. amylovora can obtain sufficient pyrimidine from the host to support bacterial growth and fire blight disease development, although de novo pyrimidine synthesis by Erw. amylovora is required for full symptom development in fruits. Significance and impact of the study: This study provides information about the fire blight host-pathogen interaction. Although the Erwinia amylovora pyrC mutant was strictly auxotrophic for pyrimidine, it grew as well as the wild-type in immature pear and apple fruits and caused severe fire blight disease in apple trees. This suggests that Erw. amylovora can obtain sufficient pyrimidines from host tissue to support growth and fire blight disease development. This situation contrasts with findings in some human bacterial pathogens, which require de novo pyrimidine synthesis for growth in host blood, for example. © 2015 The Society for Applied Microbiology.

Growth Promoting Rhizospheric and Endophytic Bacteria from Curcuma longa L. as Biocontrol Agents against Rhizome Rot and Leaf Blight Diseases.

PubMed

Vinayarani, G; Prakash, H S

2018-06-01

Plant growth promoting rhizobacteria and endophytic bacteria were isolated from different varieties of turmeric ( Curcuma longa L.) from South India. Totally 50 strains representing, 30 PGPR and 20 endophytic bacteria were identified based on biochemical assays and 16S rDNA sequence analysis. The isolates were screened for antagonistic activity against Pythium aphanidermatum (Edson) Fitzp., and Rhizoctonia solani Kuhn., causing rhizome rot and leaf blight diseases in turmeric, by dual culture and liquid culture assays. Results revealed that only five isolates of PGPR and four endophytic bacteria showed more than 70% suppression of test pathogens in both assays. The SEM studies of interaction zone showed significant ultrastructural changes of the hyphae like shriveling, breakage and desication of the pathogens by PGPR B. cereus (RBac-DOB-S24) and endophyte P. aeruginosa (BacDOB-E19). Selected isolates showed multiple Plant growth promoting traits. The rhizome bacterization followed by soil application of B. cereus (RBacDOB-S24) showed lowest Percent Disease Incidence (PDI) of rhizome rot and leaf blight, 16.4% and 15.5% respectively. Similarly, P. aeruginosa (BacDOB-E19) recorded PDI of rhizome rot (17.5%) and leaf blight (17.7%). The treatment of these promising isolates exhibited significant increase in plant height and fresh rhizome yield/plant in comparison with untreated control under greenhouse condition. Thereby, these isolates can be exploited as a potential biocontrol agent for suppressing rhizome rot and leaf blight diseases in turmeric.

Protective role of biosynthesized silver nanoparticles against early blight disease in Solanum lycopersicum.

PubMed

Kumari, Madhuree; Pandey, Shipra; Bhattacharya, Arpita; Mishra, Aradhana; Nautiyal, C S

2017-12-01

Tomato suffers a huge loss every year because of early blight disease. This study focuses on efficient inhibition of Alternaria solani, the causative agent of early blight disease in tomato in vitro and in vivo. Foliar spray of 5 μg/mL of biosynthesized silver nanoparticles in A. solani infected plants resulted in significant increase of 32.58% in fresh weight and 23.52% in total chlorophyll content of tomato as compared to A. solani infected plants. A decrease of 48.57, 30, 39.59 and 28.57% was observed in fungal spore count, lipid peroxidation, proline content and superoxide dismutase respectively in infected tomato plants after treatment with synthesized silver nanoparticles as compared to A. solani infected plants. No significant variation in terms of soil pH, cultured population, carbon source utilization pattern and soil enzymes including dehydrogenase, urease, protenase and β-glucosidase was observed after foliar spray of nanoparticles. It was revealed that direct killing of pathogens, increased photosynthetic efficiencies, increased plant resistance and decrease in stress parameters and stress enzymes are the mechanisms employed by plants and nanoparticles simultaneously to combat the biotic stress. Biosynthesized silver nanoparticles bear the potential to revolutionize plant disease management, though the molecular aspects of increased resistance must be looked upon. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Defense Response and Suppression of Phytophthora Blight Disease of Pepper by Water Extract from Spent Mushroom Substrate of Lentinula edodes

PubMed Central

Kang, Dae-Sun; Min, Kyong-Jin; Kwak, A-Min; Lee, Sang-Yeop; Kang, Hee-Wan

2017-01-01

The spent mushroom substrate (SMS) of Lentinula edodes that was derived from sawdust bag cultivation was used as materials for controlling Phytophthora blight disease of pepper. Water extract from SMS (WESMS) of L. edodes inhibited mycelial growth of Phytophthora capsici, suppressed Phytophthora blight disease of pepper seedlings by 65% and promoted growth of the plant over 30%. In high performance liquid chromatography (HPLC) analysis, oxalic acid was detected as the main organic acid compound in WESMS and inhibited the fungal mycelium at a minimum concentration of 200 mg/l. In quantitative real-time PCR, the transcriptional expression of CaBPR1 (PR protein 1), CaBGLU (β-1,3-glucanase), CaPR-4 (PR protein 4), and CaPR-10 (PR protein 10) were significantly enhanced on WESMS and DL-β-aminobutyric acid (BABA) treated pepper leaves. In addition, the salicylic acid content was also increased 4 to 6 folds in the WESMS and BABA treated pepper leaves compared to water treated leaf sample. These findings suggest that WESMS of L. edodes suppress Phytophthora blight disease of pepper through multiple effects including antifungal activity, plant growth promotion, and defense gene induction. PMID:28592945

Defense Response and Suppression of Phytophthora Blight Disease of Pepper by Water Extract from Spent Mushroom Substrate of Lentinula edodes.

PubMed

Kang, Dae-Sun; Min, Kyong-Jin; Kwak, A-Min; Lee, Sang-Yeop; Kang, Hee-Wan

2017-06-01

The spent mushroom substrate (SMS) of Lentinula edodes that was derived from sawdust bag cultivation was used as materials for controlling Phytophthora blight disease of pepper. Water extract from SMS (WESMS) of L. edodes inhibited mycelial growth of Phytophthora capsici , suppressed Phytophthora blight disease of pepper seedlings by 65% and promoted growth of the plant over 30%. In high performance liquid chromatography (HPLC) analysis, oxalic acid was detected as the main organic acid compound in WESMS and inhibited the fungal mycelium at a minimum concentration of 200 mg/l. In quantitative real-time PCR, the transcriptional expression of CaBPR1 (PR protein 1), CaBGLU (β-1,3-glucanase), CaPR-4 (PR protein 4), and CaPR-10 (PR protein 10) were significantly enhanced on WESMS and DL-β-aminobutyric acid (BABA) treated pepper leaves. In addition, the salicylic acid content was also increased 4 to 6 folds in the WESMS and BABA treated pepper leaves compared to water treated leaf sample. These findings suggest that WESMS of L. edodes suppress Phytophthora blight disease of pepper through multiple effects including antifungal activity, plant growth promotion, and defense gene induction.

Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance

USDA-ARS?s Scientific Manuscript database

A study was initiated to understand Burkholderia glumae, the major causal agent for bacterial panicle blight disease of rice; to develop practical diagnostic methods for monitoring the disease; and to evaluate rice germplasm for resistance. Burkholderia glumae was frequently isolated from infected p...

Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance

USDA-ARS?s Scientific Manuscript database

A study was initiated to understand Burkholderia glumae (major causal agent for bacterial panicle blight disease of rice) to develop practical diagnostic methods for monitoring the disease; and to evaluate rice germplasm for resistance. B. glumae was frequently isolated from symptomatic panicles on...

An arabinobio-hydrolase (Arb93B) from Fusarium graminearum is associated with wheat head blight disease

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), caused by the fungus Fusarium graminearum, is one of the most important diseases of wheat and barley worldwide. FHB not only reduces crop yield, but the fungus also contaminates grains with mycotoxins, which are harmful to humans and animals. A previous study demonstrated...

Allelic analysis of sheath blight resistance with association mapping in rice

USDA-ARS?s Scientific Manuscript database

Sheath blight is one of the most devastating diseases world-wide in rice. For the first time, we adopted association mapping to identify quantitative trait loci for sheath blight resistance from the USDA rice mini-core collection. The phenotyping was conducted with a newly developed micro-chamber me...

Pole blight of western white pine

Treesearch

Charles D. Leaphart; Otis L. Copeland; Donald P. Graham

1957-01-01

Pole blight is one of the most serious diseases of western white pine (Pinus monticola Dougl.) and is restricted to that species. The disease is given this name because it affects pole-size trees primarily, usually those within the 40- to 100-year age class, although trees both younger and older are occasionally affected.

Identification and functional analysis of cassava DELLA proteins in plant disease resistance against cassava bacterial blight.

PubMed

Li, Xiaolin; Liu, Wen; Li, Bing; Liu, Guoyin; Wei, Yunxie; He, Chaozu; Shi, Haitao

2018-03-01

Gibberellin (GA) is an essential plant hormone in plant growth and development as well as various stress responses. DELLA proteins are important repressors of GA signal pathway. GA and DELLA have been extensively investigated in several model plants. However, the in vivo roles of GA and DELLA in cassava, one of the most important crops and energy crops in the tropical area, are unknown. In this study, systematic genome-wide analysis identified 4 MeDELLAs in cassava, as evidenced by the evolutionary tree, gene structures and motifs analyses. Gene expression analysis found that 4 MeDELLAs were commonly regulated by flg22 and Xanthomonas axonopodis pv manihotis (Xam). Through overexpression in Nicotiana benthamiana, we found that 4 MeDELLAs conferred improved disease resistance against cassava bacterial blight. Through virus-induced gene silencing (VIGS) in cassava, we found that MeDELLA-silenced plants exhibited decreased disease resistance, with less callose deposition and lower transcript levels of defense-related genes. This is the first study identifying MeDELLAs as positive regulators of disease resistance against cassava bacterial blight. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Pseudomonas blight discovered on raspberry in Watsonville

USDA-ARS?s Scientific Manuscript database

In the winter (February) of 2013, a field of raspberries in Watsonville was discovered to be infected with Pseudomonas syringae, the causal agent of Pseudomonas blight disease. This was the first documentation of this disease on raspberry in our region. The infection of raspberry plants is manifeste...

Large scale field inoculation and scoring of maize southern leaf blight and other maize foliar fungal diseases

USDA-ARS?s Scientific Manuscript database

Field-grown maize is inoculated with Cochliobolus heterostrophus, causal agent of Southern Leaf Blight disease, by dropping sorghum grains infested with the fungus into the whorl of each maize plant at an early stage of growth. The initial lesions produce secondary inoculum that is dispersed by wind...

Late blight-resistant tuber-bearing Solanum species in field and laboratory trials

USDA-ARS?s Scientific Manuscript database

Late blight, caused by Phytophthora infestans, is the most disastrous and widespread disease of potato. One of the most effective means of controlling late blight is through the use of resistant cultivars, but newly developed resistant cultivars often lose their resistance after a few years of comm...

Red band needle blight of pines...a tentative appraisal for California

Treesearch

Willis W. Wagener

1967-01-01

Since it first appeared in Tanganyika in 1957, red band needle blight has become a major forest disease around the world. Apparently spread by high altitude winds, the blight has been found killing Monterey and other pines in California's northwest coastal counties. About 30 pine species are susceptible. Caused by the fungus Dothistroma pini (...

Genes for wheat resistance ad susceptibility to Fusarium head blight and Septoria tritici blotch disease of wheat

USDA-ARS?s Scientific Manuscript database

Septoria tritici blotch (STB) and Fusarium head blight (FHB) are two of the most devastating diseases of wheat. Breeding for host resistance is an important component of integrated strategies for STB and FHB control. We identify genes and functional gene markers that can be used to expedite the proc...

Neofusicoccum ribis Associated with Leaf Blight on Rubber (Hevea brasiliensis) in Peninsular Malaysia

PubMed Central

Nyaka Ngobisa, A. I. C.; Zainal Abidin, M. A.; Wong, M. Y.; Wan Noordin, M. W. D.

2013-01-01

Hevea brasiliensis is a natural source of rubber and an important plantation tree species in Malaysia. Leaf blight disease caused by Fusicoccum substantially reduces the growth and performance of H. brasiliensis. The aim of this study was to use a combination of both morphological characteristics and molecular data to clarify the taxonomic position of the fungus associated with leaf blight disease. Fusicoccum species were isolated from infected leaves collected from plantations at 3 widely separated locations – Selangor, Perak, and Johor states – in Peninsular Malaysia in 2010. All the isolates were identified according to their conidial patterns and DNA sequences generated from internal transcribed spacers (ITS1 and ITS2), the 5.8S rRNA, and an unknown locus (BotF15) containing microsatellite repeats. Based on taxonomic and sequence data, Neofusicoccum ribis was identified as the main cause of leaf blight disease in H. brasiliensis in commercial plantations in Malaysia. A pathogenicity trial on detached leaves further confirmed that N. ribis causes leaf blight disease. N. ribis is an important leaf pathogen, and its detection in Malaysia has important implications for future planting of H. brasiliensis. PMID:25288924

Neofusicoccum ribis Associated with Leaf Blight on Rubber (Hevea brasiliensis) in Peninsular Malaysia.

PubMed

Nyaka Ngobisa, A I C; Zainal Abidin, M A; Wong, M Y; Wan Noordin, M W D

2013-03-01

Hevea brasiliensis is a natural source of rubber and an important plantation tree species in Malaysia. Leaf blight disease caused by Fusicoccum substantially reduces the growth and performance of H. brasiliensis. The aim of this study was to use a combination of both morphological characteristics and molecular data to clarify the taxonomic position of the fungus associated with leaf blight disease. Fusicoccum species were isolated from infected leaves collected from plantations at 3 widely separated locations - Selangor, Perak, and Johor states - in Peninsular Malaysia in 2010. All the isolates were identified according to their conidial patterns and DNA sequences generated from internal transcribed spacers (ITS1 and ITS2), the 5.8S rRNA, and an unknown locus (BotF15) containing microsatellite repeats. Based on taxonomic and sequence data, Neofusicoccum ribis was identified as the main cause of leaf blight disease in H. brasiliensis in commercial plantations in Malaysia. A pathogenicity trial on detached leaves further confirmed that N. ribis causes leaf blight disease. N. ribis is an important leaf pathogen, and its detection in Malaysia has important implications for future planting of H. brasiliensis.

Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome.

PubMed

Zhang, Yunzeng; Barthe, Gary; Grosser, Jude W; Wang, Nian

2016-07-08

Citrus blight is a citrus tree overall decline disease and causes serious losses in the citrus industry worldwide. Although it was described more than one hundred years ago, its causal agent remains unknown and its pathophysiology is not well determined, which hampers our understanding of the disease and design of suitable disease management. In this study, we sequenced and assembled the draft genome for Swingle citrumelo, one important citrus rootstock. The draft genome is approximately 280 Mb, which covers 74 % of the estimated Swingle citrumelo genome and the average coverage is around 15X. The draft genome of Swingle citrumelo enabled us to conduct transcriptome analysis of roots of blight and healthy Swingle citrumelo using RNA-seq. The RNA-seq was reliable as evidenced by the high consistence of RNA-seq analysis and quantitative reverse transcription PCR results (R(2) = 0.966). Comparison of the gene expression profiles between blight and healthy root samples revealed the molecular mechanism underneath the characteristic blight phenotypes including decline, starch accumulation, and drought stress. The JA and ET biosynthesis and signaling pathways showed decreased transcript abundance, whereas SA-mediated defense-related genes showed increased transcript abundance in blight trees, suggesting unclassified biotrophic pathogen was involved in this disease. Overall, the Swingle citrumelo draft genome generated in this study will advance our understanding of plant biology and contribute to the citrus breeding. Transcriptome analysis of blight and healthy trees deepened our understanding of the pathophysiology of citrus blight.

Effects of early and late harvest on agronomic performance and stability of late blight resistant (R-gene free) potato genotypes

USDA-ARS?s Scientific Manuscript database

To assess the effectiveness of genotype resistance to potato late blight, foliar blight development, area under disease progress curves (AUDPC) and tuber blight were quantified. Late blight resistant potato genotypes (R-gene free) were assessed for yield performance and stability at early (90 days) ...

Exploring Fusarium head blight disease control by RNA interference

USDA-ARS?s Scientific Manuscript database

RNA interference (RNAi) technology provides a novel tool to study gene function and plant protection strategies. Fusarium graminearum is the causal agent of Fusarium head blight (FHB), which reduces crop yield and quality by producing trichothecene mycotoxins including 3-acetyl deoxynivalenol (3-ADO...

Dothistroma Needle Blight of Pines

Treesearch

Glenn W. Peterson

1982-01-01

Dothistroma blight is a devastating foliar disease of a wide range of pine species. The causal fungus, Dothistroma pini Hulbary, infects and kills needles. Premature defoliation caused by this fungus has resulted in complete failure of most ponderosa pine plantings in States east of the Great Plains. In the central and southern Great Plains, D. pini damages Austrian...

Induction of antimicrobial 3-deoxyflavonoids in pome fruit trees controls fire blight.

PubMed

Halbwirth, Heidrun; Fischer, Thilo C; Roemmelt, Susanne; Spinelli, Francesco; Schlangen, Karin; Peterek, Silke; Sabatini, Emidio; Messina, Christian; Speakman, John-Bryan; Andreotti, Carlo; Rademacher, Wilhelm; Bazzi, Carlo; Costa, Guglielmo; Treutter, Dieter; Forkmann, Gert; Stich, Karl

2003-01-01

Fire blight, a devastating bacterial disease in pome fruits, causes severe economic losses worldwide. Hitherto, an effective control could only be achieved by using antibiotics, but this implies potential risks for human health, livestock and environment. A new approach allows transient inhibition of a step in the flavonoid pathway, thereby inducing the formation of a novel antimicrobial 3-deoxyflavonoid controlling fire blight in apple and pear leaves. This compound is closely related to natural phytoalexins in sorghum. The approach does not only provide a safe method to control fire blight: Resistance against different pathogens is also induced in other crop plants.

Responses of high O/L peanut cultivars to fungicide for control of Sclerotinia blight

USDA-ARS?s Scientific Manuscript database

Sclerotinia blight, caused by Sclerotinia minor, remains an important disease of peanuts in Oklahoma where it causes severe damage when prolonged periods of wet weather occur during mid to late season. Progress has been made in increasing the resistance of peanut cultivars to Sclerotinia blight. S...

Preliminary report on soil-rootlet relationships to pole blight of western white pine

Treesearch

Otis L. Copeland; Charles D. Leaphart

1955-01-01

Results of a coordinated soil-rootlet mortality study in 1954 indicate that the severity of the pole blight disease of western white pine (Pinus monticola Dougl.) is significantly correlated with certain physical soil characteristics and rootlet mortality. The finding of this relationship does not necessarily imply that these factors are the cause of pole blight....

What Causes a Blighted Ovum?

MedlinePlus

... ovum: What causes it? What causes a blighted ovum? What symptoms can I expect? Answers from Yvonne Butler Tobah, M.D. A blighted ovum, also called an anembryonic pregnancy or anembryonic gestation, ...

Effects of One Cycle of Recurrent Selection for Early Blight Resistance in a Diploid Hybrid Solanum phureja-S. stenotomum Population

USDA-ARS?s Scientific Manuscript database

Early blight, caused by Alternaria solani, is the second most important foliar disease in potatoes, after late blight, around the world. Heritable early blight resistance was previously identified in a diploid hybrid population of Solanum phureja-S. stenotomum (phu-stn). Seventy-two clones, consis...

Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja

PubMed Central

Álvarez, María F.; Angarita, Myrian; Delgado, María C.; García, Celsa; Jiménez-Gomez, José; Gebhardt, Christiane; Mosquera, Teresa

2017-01-01

The genetic basis of quantitative disease resistance has been studied in crops for several decades as an alternative to R gene mediated resistance. The most important disease in the potato crop is late blight, caused by the oomycete Phytophthora infestans. Quantitative disease resistance (QDR), as any other quantitative trait in plants, can be genetically mapped to understand the genetic architecture. Association mapping using DNA-based markers has been implemented in many crops to dissect quantitative traits. We used an association mapping approach with candidate genes to identify the first genes associated with quantitative resistance to late blight in Solanum tuberosum Group Phureja. Twenty-nine candidate genes were selected from a set of genes that were differentially expressed during the resistance response to late blight in tetraploid European potato cultivars. The 29 genes were amplified and sequenced in 104 accessions of S. tuberosum Group Phureja from Latin America. We identified 238 SNPs in the selected genes and tested them for association with resistance to late blight. The phenotypic data were obtained under field conditions by determining the area under disease progress curve (AUDPC) in two seasons and in two locations. Two genes were associated with QDR to late blight, a potato homolog of thylakoid lumen 15 kDa protein (StTL15A) and a stem 28 kDa glycoprotein (StGP28). Key message: A first association mapping experiment was conducted in Solanum tuberosum Group Phureja germplasm, which identified among 29 candidates two genes associated with quantitative resistance to late blight. PMID:28674545

Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja.

PubMed

Álvarez, María F; Angarita, Myrian; Delgado, María C; García, Celsa; Jiménez-Gomez, José; Gebhardt, Christiane; Mosquera, Teresa

2017-01-01

The genetic basis of quantitative disease resistance has been studied in crops for several decades as an alternative to R gene mediated resistance. The most important disease in the potato crop is late blight, caused by the oomycete Phytophthora infestans. Quantitative disease resistance (QDR), as any other quantitative trait in plants, can be genetically mapped to understand the genetic architecture. Association mapping using DNA-based markers has been implemented in many crops to dissect quantitative traits. We used an association mapping approach with candidate genes to identify the first genes associated with quantitative resistance to late blight in Solanum tuberosum Group Phureja. Twenty-nine candidate genes were selected from a set of genes that were differentially expressed during the resistance response to late blight in tetraploid European potato cultivars. The 29 genes were amplified and sequenced in 104 accessions of S. tuberosum Group Phureja from Latin America. We identified 238 SNPs in the selected genes and tested them for association with resistance to late blight. The phenotypic data were obtained under field conditions by determining the area under disease progress curve (AUDPC) in two seasons and in two locations. Two genes were associated with QDR to late blight, a potato homolog of thylakoid lumen 15 kDa protein ( StTL15A ) and a stem 28 kDa glycoprotein ( StGP28 ). Key message : A first association mapping experiment was conducted in Solanum tuberosum Group Phureja germplasm, which identified among 29 candidates two genes associated with quantitative resistance to late blight.

Effect of nitrogen fertilization and fungicides on Botryosphaeria stem blight lesion development on detached stems

USDA-ARS?s Scientific Manuscript database

: Botryosphaeria stem blight is a destructive disease of blueberries that has not been well managed with fungicides. Field observations showed that stem blight is more severe on vigorously growing plants than on slower growing plants. Detached stem assays were used to compare the effect of fertil...

Fire blight: applied genomic insights of the pathogen and host

USDA-ARS?s Scientific Manuscript database

The enterobacterial phytopathogen, Erwinia amylovora, causes fire blight, an invasive disease that threatens a wide range of commercial and ornamental Rosaceae host plants. The response elicited by E. amylovora in its host during disease development is similar to the hypersensitive reaction that ty...

Pseudomonas blight caused by Pseudomonas syringae on raspberry in California

USDA-ARS?s Scientific Manuscript database

Plantings of red raspberry (Rubus idaeus var. strigosus) exhibited symptoms of a previously undocumented disease. Lesions were observable from both adaxial and abaxial leaf surfaces. As disease progressed, lesions enlarged and coalesced, resulting in significant dark brown to black blighting of the ...

Molecular genetics of Erwinia amylovora involved in the development of fire blight.

PubMed

Oh, Chang-Sik; Beer, Steven V

2005-12-15

The bacterial plant pathogen, Erwinia amylovora, causes the devastating disease known as fire blight in some Rosaceous plants like apple, pear, quince, raspberry and several ornamentals. Knowledge of the factors affecting the development of fire blight has mushroomed in the last quarter century. On the molecular level, genes encoding a Hrp type III secretion system, genes encoding enzymes involved in synthesis of extracellular polysaccharides and genes facilitating the growth of E. amylovora in its host plants have been characterized. The Hrp pathogenicity island, delimited by genes suggesting horizontal gene transfer, is composed of four distinct regions, the hrp/hrc region, the HEE (Hrp effectors and elicitors) region, the HAE (Hrp-associated enzymes) region, and the IT (Island transfer) region. The Hrp pathogenicity island encodes a Hrp type III secretion system (TTSS), which delivers several proteins from bacteria to plant apoplasts or cytoplasm. E. amylovora produces two exopolysaccharides, amylovoran and levan, which cause the characteristic fire blight wilting symptom in host plants. In addition, other genes, and their encoded proteins, have been characterized as virulence factors of E. amylovora that encode enzymes facilitating sorbitol metabolism, proteolytic activity and iron harvesting. This review summarizes our understanding of the genes and gene products of E. amylovora that are involved in the development of the fire blight disease.

Potato agriculture, late blight science, and the molecularization of plant pathology.

PubMed

Turner, R Steven

2008-01-01

By the mid-1980s nucleic-acid based methods were penetrating the farthest reaches of biological science, triggering rivalries among practitioners, altering relationships among subfields, and transforming the research front. This article delivers a "bottom up" analysis of that transformation at work in one important area of biological science, plant pathology, by tracing the "molecularization" of efforts to understand and control one notorious plant disease -- the late blight of potatoes. It mobilizes the research literature of late blight science as a tool through which to trace the changing typography of the research front from 1983 to 2003. During these years molecularization intensified the traditional fragmentation of the late blight research community, even as it dramatically integrated study of the causal organism into broader areas of biology. In these decades the pathogen responsible for late blight, the oomycete "Phytophthora infestans," was discovered to be undergoing massive, frightening, and still largely unexplained genetic diversification -- a circumstance that lends the episode examined here an urgency that reinforces its historiographical significance as a case-study in the molecularization of the biological sciences.

Effect of nitrogen fertilization and fungicides on Botryosphaeria stem blight lesion development on detached blueberry stems

USDA-ARS?s Scientific Manuscript database

Botryosphaeria stem blight is a destructive disease of blueberries. Field observations indicate stem blight is more severe on vigorous plants than on slower growing plants. Two studies compared the effect of two types of fertilizers applied at four rates and nine fungicides on lesion development fo...

Ranking cultivated blueberry for Mummy Berry Blight and Fruit Infection Incidence

USDA-ARS?s Scientific Manuscript database

Mummy berry is an important disease of cultivated blueberry. The disease has two distinct phases; a blighting phase initiated by ascospores and a fruit infection stage initiated by conidia. In this study we investigated the resistance of more than 100 blueberry cultivar to both phases of the disease...

Corn blight watch experiment results

NASA Technical Reports Server (NTRS)

Johannsen, C. J.; Bauer, M. E.

1972-01-01

Results pertaining to the detection and assessment of the severity and extent of southern corn leaf blight in the Corn Belt area are discussed. Ground observations, interpretation of color infrared photography, and machine analysis of multispectral scanner data were used to identify the blight.

Gnomonia canker, shoot blight, and leaf spot of yellow birch.

Treesearch

Kenneth J. Jr. Kessler

1978-01-01

Describes a canker, shoot blight, and leaf spot disease of yellow birch seedlings in the northern Great Lakes region and tells how and when trees become infected by the fungal causal agent, Gnomonia setacea.

Pole blight - a new disease of western white pine

Treesearch

C. A. Wellner

1947-01-01

Pole blight is a killer. Apparently attacking pole-size western white pine trees of any vigor or crown class, it seems to require from one to ten years to kill a tree. White pine is generally believed to be the only species susceptible, although there is a possibility that grand fir and Douglas-fir also may be attacked. Not enough time has elapsed for us to say how...

Fire blight resistance in wild accessions of Malus sieversii

USDA-ARS?s Scientific Manuscript database

Fire blight (Erwinia amylovora) is a devastating bacterial disease in apple that results in severe economic losses. Epidemics are becoming more common as susceptible cultivars and rootstocks are being planted, and control is becoming more difficult as antibiotic-resistant strains develop. Resistan...

Genetic mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.) using a simple sequence repeat linkage map.

PubMed

Tar'an, B; Warkentin, T D; Tullu, A; Vandenberg, A

2007-01-01

Ascochyta blight, caused by the fungus Ascochyta rabiei (Pass.) Lab., is one of the most devastating diseases of chickpea (Cicer arietinum L.) worldwide. Research was conducted to map genetic factors for resistance to ascochyta blight using a linkage map constructed with 144 simple sequence repeat markers and 1 morphological marker (fc, flower colour). Stem cutting was used to vegetatively propagate 186 F2 plants derived from a cross between Cicer arietinum L. 'ICCV96029' and 'CDC Frontier'. A total of 556 cutting-derived plants were evaluated for their reaction to ascochyta blight under controlled conditions. Disease reaction of the F1 and F2 plants demonstrated that the resistance was dominantly inherited. A Fain's test based on the means and variances of the ascochyta blight reaction of the F3 families showed that a few genes were segregating in the population. Composite interval mapping identified 3 genomic regions that were associated with the reaction to ascochyta blight. One quantitative trait locus (QTL) on each of LG3, LG4, and LG6 accounted for 13%, 29%, and 12%, respectively, of the total estimated phenotypic variation for the reaction to ascochyta blight. Together, these loci controlled 56% of the total estimated phenotypic variation. The QTL on LG4 and LG6 were in common with the previously reported QTL for ascochyta blight resistance, whereas the QTL on LG3 was unique to the current population.

Flower biology and biologically-based integrated fire blight management

USDA-ARS?s Scientific Manuscript database

Fire blight infection is generally initiated in flowers, and thus, research has been directed to the biology and microbial ecology of flowers as related to this disease. In addition to investigations involving apple and pear flowers, Manchurian crab apple (Malus manchurica), closely related to appl...

Southern corn leaf blight a story worth retelling

USDA-ARS?s Scientific Manuscript database

The Southern Corn Leaf Blight Epidemic of 1970-1971 was one of the most costly disease outbreaks to affect North American agriculture, destroying 15% of the crop at a cost of $1.0 billion (US). It resulted from an over reliance on cytoplasmic Texas male sterile (cms-T) lines in hybrid seed producti...

Establishment of American chestnuts (Castanea dentata) bred for blight (Cryphonectria parasitica ) resistance: influence of breeding and nursery grading

Treesearch

Stacy L. Clark; Scott E. Schlarbaum; Arnold M. Saxton; Frederick V. Hebard

2016-01-01

European and American chestnut species (Castanea) have been decimated by exotic species, most notably chestnut blight (Cryphonectria parasitica), since the early nineteenth century. Backcross breeding programs that transfer blight disease resistance from Chinese chestnut (C. mollissima) into American...

Effects of microclimate, cropping systems, and irrigation management on early and late blight potential on Russet Burbank potato

USDA-ARS?s Scientific Manuscript database

Soil and irrigation management have been used to optimize crop production. However,their effects on microclimate, development, and controls of potato diseases have not been adequately quantified. The effects of soil, crop, and water management on development of potato early blight and late blight we...

Boxwood Blight: A new scourge, a new paradigm for collaborative research

USDA-ARS?s Scientific Manuscript database

The genus Buxus is prized for its use as individual specimen plants, hedges, parterres and landscape groupings. In general, boxwood suffers from few pests or diseases, which is one reason the recent introduction of boxwood blight disease to Europe and North America has been so significant to people ...

Efficacy of different fungicides against Rhizoctonia brown patch and Pythium blight on turfgrass in Italy.

PubMed

Mocioni, M; Titone, P; Garibaldi, A; Gullino, M L

2003-01-01

Brown patch, incited by Rhizoctonia solani Kuhn, and Pythium blight, caused by Pythium spp. are two of the diseases most frequently observed on turfgrass in high maintenance stands, as on golf courses. In such conditions the control strategies, based on chemicals, are particularly difficult due to the scarcity of fungicides registered for turf in Italy. The results obtained in experimental trials carried out to evaluate the efficacy of chemical and biological products against brown patch and Pythium blight are reported. On mature turfgrass, maintained under fairway conditions, azoxystrobin, and trifoxystrobin, not yet registered on turf, were very effective against brown patch. Tebuconazole, applied in three different formulations, was very effective against R. solani, while Trichoderma spp. and azadiractine did not control the pathogen. In greenhouse conditions on Agrostis stolonifera, in the presence of severe disease incidence, due to artificial inoculation, benalaxyl-M satisfactorily controlled Pythium blight; Trichoderma spp. as well as a commercial formulation of T. harzianum, applied one week before the inoculation, were not effective. Among the fungicides not yet registered for use on turfgrass in Italy, metalaxyl-M + mancozeb was effective against Pythium blight.

RAV transcription factors are essential for disease resistance against cassava bacterial blight via activation of melatonin biosynthesis genes.

PubMed

Wei, Yunxie; Chang, Yanli; Zeng, Hongqiu; Liu, Guoyin; He, Chaozu; Shi, Haitao

2018-01-01

With 1 AP2 domain and 1 B3 domain, 7 MeRAVs in apetala2/ethylene response factor (AP2/ERF) gene family have been identified in cassava. However, the in vivo roles of these remain unknown. Gene expression assays showed that the transcripts of MeRAVs were commonly regulated after Xanthomonas axonopodis pv manihotis (Xam) and MeRAVs were specifically located in plant cell nuclei. Through virus-induced gene silencing (VIGS) in cassava, we found that MeRAV1 and MeRAV2 are essential for plant disease resistance against cassava bacterial blight, as shown by the bacterial propagation of Xam in plant leaves. Through VIGS in cassava leaves and overexpression in cassava leave protoplasts, we found that MeRAV1 and MeRAV2 positively regulated melatonin biosynthesis genes and the endogenous melatonin level. Further investigation showed that MeRAV1 and MeRAV2 are direct transcriptional activators of 3 melatonin biosynthesis genes in cassava, as evidenced by chromatin immunoprecipitation-PCR in cassava leaf protoplasts and electrophoretic mobility shift assay. Moreover, cassava melatonin biosynthesis genes also positively regulated plant disease resistance. Taken together, this study identified MeRAV1 and MeRAV2 as common and upstream transcription factors of melatonin synthesis genes in cassava and revealed a model of MeRAV1 and MeRAV2-melatonin biosynthesis genes-melatonin level in plant disease resistance against cassava bacterial blight. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus 'Robusta 5' accessions

USDA-ARS?s Scientific Manuscript database

Breeding of fire blight resistant scions and rootstocks is a goal of several international apple breeding programs, as options are limited for management of this destructive disease caused by the bacterial pathogen Erwinia amylovora. A broad, large effect QTL for fire blight resistance has been pre...

Results of the 1971 Corn Blight Watch experiment

NASA Technical Reports Server (NTRS)

Macdonald, R. B.; Allen, R. D.; Bauer, M. E.; Clifton, J. W.; Frickson, J. D.; Landgrebe, D. A.

1972-01-01

Advanced remote sensing techniques are used to: (1)Detect development and spread of corn leaf blight during the growing season; (2) assess the extent and severity of blight infection; (3) assess the impact of blight on corn production; and (4) estimate the applicability of these techniques to similar situations occurring in the future.

Ascochyta blight and insect pests of chickpeas in the Palouse

USDA-ARS?s Scientific Manuscript database

This newsletter article informs chickpea growers in the Palouse region about current disease and insect pest problems. Ascochyta blight appeared in many chickpea fields and was severe in some fields. Insect pests including loopers and armyworms were rampant. Appropriate management practices for t...

Identification of an emergent bacterial blight of garlic in Brazil

USDA-ARS?s Scientific Manuscript database

Outbreaks of a bacterial blight disease occurred on garlic (Allium sativum) cultivars Roxo Caxiense, Quiteria and Cacador in Southern Brazil, and threatened the main production regions of Rio Grande do Sul State. Symptoms were characterized by watersoaked reddish streaks along the leaf midrib, follo...

The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.

PubMed

Liu, Qing; Yang, Jianyuan; Yan, Shijuan; Zhang, Shaohong; Zhao, Junliang; Wang, Wenjuan; Yang, Tifeng; Wang, Xiaofei; Mao, Xingxue; Dong, Jingfang; Zhu, Xiaoyuan; Liu, Bin

2016-11-01

This is the first report that GLP gene (OsGLP2-1) is involved in panicle blast and bacterial blight resistance in rice. In addition to its resistance to blast and bacterial blight, OsGLP2-1 has also been reported to co-localize with a QTLs for sheath blight resistance in rice. These suggest that the disease resistance provided by OsGLP2-1 is quantitative and broad spectrum. Its good resistance to these major diseases in rice makes it to be a promising target in rice breeding. Rice (Oryza sativa) blast caused by Magnaporthe oryzae and bacterial blight caused by Xanthomonas oryzae pv. oryzae are the two most destructive rice diseases worldwide. Germin-like protein (GLP) gene family is one of the important defense gene families which have been reported to be involved in disease resistance in plants. Although GLP proteins have been demonstrated to positively regulate leaf blast resistance in rice, their involvement in resistance to panicle blast and bacterial blight, has not been reported. In this study, we reported that one of the rice GLP genes, OsGLP2-1, was significantly induced by blast fungus. Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight. The temporal and spatial expression analysis revealed that OsGLP2-1is highly expressed in leaves and panicles and sub-localized in the cell wall. Compared with empty vector transformed (control) plants, the OsGLP2-1 overexpressing plants exhibited higher levels of H 2 O 2 both before and after pathogen inoculation. Moreover, OsGLP2-1 was significantly induced by jasmonic acid (JA). Overexpression of OsGLP2-1 induced three well-characterized defense-related genes which are associated in JA-dependent pathway after pathogen infection. Higher endogenous level of JA was also identified in OsGLP2-1 overexpressing plants than in control plants both before and after pathogen inoculation. Together, these results suggest that OsGLP2-1 functions as a positive regulator to

Testing American chestnuts for blight resistance

Treesearch

Jesse D. Diller

1957-01-01

It has now been over half a century since chestnut blight, caused by the fungus Endothia parasitica (Murr.) A. & A., was introduced into America from the Orient. In that time the blight has spread relentlessly and has destroyed all of our commercial stands of this once most valuable hardwood species of the East.

Ponderosa pine needle blight in eastern Oregon during 1955 and 1956.

Treesearch

John Hunt; T.W. Childs

1957-01-01

A survey of ponderosa pine needle blight during 1955 and 1956, principally in eastern Oregon (where the disease is much more abundant than in Washington), provided information on extent of damage and on association of infection with certain environmental factors. Observations were largely confined to localities where the disease was known to be more than ordinarily...

Two Cassava Basic Leucine Zipper (bZIP) Transcription Factors (MebZIP3 and MebZIP5) Confer Disease Resistance against Cassava Bacterial Blight.

PubMed

Li, Xiaolin; Fan, Shuhong; Hu, Wei; Liu, Guoyin; Wei, Yunxie; He, Chaozu; Shi, Haitao

2017-01-01

Basic domain-leucine zipper (bZIP) transcription factor, one type of conserved gene family, plays an important role in plant development and stress responses. Although 77 MebZIPs have been genome-wide identified in cassava, their in vivo roles remain unknown. In this study, we analyzed the expression pattern and the function of two MebZIPs ( MebZIP3 and MebZIP5 ) in response to pathogen infection. Gene expression analysis indicated that MebZIP3 and MebZIP5 were commonly regulated by flg22, Xanthomonas axonopodis pv. manihotis ( Xam ), salicylic acid (SA), and hydrogen peroxide (H 2 O 2 ). Subcellular localization analysis showed that MebZIP3 and MebZIP5 are specifically located in cell nucleus. Through overexpression in tobacco, we found that MebZIP3 and MebZIP5 conferred improved disease resistance against cassava bacterial blight, with more callose depositions. On the contrary, MebZIP3- and MebZIP5 -silenced plants by virus-induced gene silencing (VIGS) showed disease sensitive phenotype, lower transcript levels of defense-related genes and less callose depositions. Taken together, this study highlights the positive role of MebZIP3 and MebZIP5 in disease resistance against cassava bacterial blight for further utilization in genetic improvement of cassava disease resistance.

Earlier occurrence and increased explanatory power of climate for the first incidence of potato late blight caused by Phytophthora infestans in Fennoscandia.

PubMed

Lehsten, Veiko; Wiik, Lars; Hannukkala, Asko; Andreasson, Erik; Chen, Deliang; Ou, Tinghai; Liljeroth, Erland; Lankinen, Åsa; Grenville-Briggs, Laura

2017-01-01

Late blight (caused by Phytophthora infestans) is a devastating potato disease that has been found to occur earlier in the season over the last decades in Fennoscandia. Up until now the reasons for this change have not been investigated. Possible explanations for this change are climate alterations, changes in potato production or changes in pathogen biology, such as increased fitness or changes in gene flow within P. infestans populations. The first incidence of late blight is of high economic importance since fungicidal applications should be typically applied two weeks before the first signs of late blight and are repeated on average once a week. We use field observations of first incidence of late blight in experimental potato fields from five sites in Sweden and Finland covering a total of 30 years and investigate whether the earlier incidence of late blight can be related to the climate. We linked the field data to meteorological data and found that the previous assumption, used in common late blight models, that the disease only develops at relative humidity levels above 90% had to be rejected. Rather than the typically assumed threshold relationship between late blight disease development and relative humidity we found a linear relationship. Our model furthermore showed two distinct responses of late blight to climate. At the beginning of the observation time (in Sweden until the early 90s and in Finland until the 2000s) the link between climate and first incidence was very weak. However, for the remainder of the time period the link was highly significant, indicating a change in the biological properties of the pathogen which could for example be a change in the dominating reproduction mode or a physiological change in the response of the pathogen to climate. The study shows that models used in decision support systems need to be checked and re-parametrized regularly to be able to capture changes in pathogen biology. While this study was performed with

Genomics-enabled analysis of the emergent disease cotton bacterial blight

PubMed Central

Phillips, Anne Z.; Burke, Jillian; Bunn, J. Imani; Allen, Tom W.; Wheeler, Terry

2017-01-01

Cotton bacterial blight (CBB), an important disease of (Gossypium hirsutum) in the early 20th century, had been controlled by resistant germplasm for over half a century. Recently, CBB re-emerged as an agronomic problem in the United States. Here, we report analysis of cotton variety planting statistics that indicate a steady increase in the percentage of susceptible cotton varieties grown each year since 2009. Phylogenetic analysis revealed that strains from the current outbreak cluster with race 18 Xanthomonas citri pv. malvacearum (Xcm) strains. Illumina based draft genomes were generated for thirteen Xcm isolates and analyzed along with 4 previously published Xcm genomes. These genomes encode 24 conserved and nine variable type three effectors. Strains in the race 18 clade contain 3 to 5 more effectors than other Xcm strains. SMRT sequencing of two geographically and temporally diverse strains of Xcm yielded circular chromosomes and accompanying plasmids. These genomes encode eight and thirteen distinct transcription activator-like effector genes. RNA-sequencing revealed 52 genes induced within two cotton cultivars by both tested Xcm strains. This gene list includes a homeologous pair of genes, with homology to the known susceptibility gene, MLO. In contrast, the two strains of Xcm induce different clade III SWEET sugar transporters. Subsequent genome wide analysis revealed patterns in the overall expression of homeologous gene pairs in cotton after inoculation by Xcm. These data reveal important insights into the Xcm-G. hirsutum disease complex and strategies for future development of resistant cultivars. PMID:28910288

Occurrence of Leaf Blight on Cosmos Caused by Alternaria cosmosa in Korea.

PubMed

Deng, Jian Xin; Lee, Ji Hye; Paul, Narayan Chandra; Cho, Hye Sun; Lee, Hyang Burm; Yu, Seung Hun

2015-03-01

In 2011, a leaf blight disease was observed on cosmos (Cosmos bipinnatus) leaves in Nonsan, Korea. The causal pathogen was isolated and identified based on morphological and molecular approaches. Morphological characteristics of the pathogen matched well with the Alternaria cosmosa and also easily distinguishable from Alternaria zinniae reported from cosmos seeds by producing branched beak. Phylogenetically, the pathogen could not be distinguished from A. passiflorae based on the sequence analysis of a combined data set of Alt a1 and gpd genes. However, A. passiflorae was distinguished from the present species by having conidiophores with 4 to 5 conidiogenous loci. The results indicate that the present Alternaria species is A. cosmosa. Pathogenicity tests revealed that the isolate was pathogenic to the leaves of Cosmos bipinnatus. This is the first report of Alternaria blight disease caused by A. cosmosa on cosmos in Korea.

In Silico Identification of Mimicking Molecules as Defense Inducers Triggering Jasmonic Acid Mediated Immunity against Alternaria Blight Disease in Brassica Species

PubMed Central

Pathak, Rajesh K.; Baunthiyal, Mamta; Shukla, Rohit; Pandey, Dinesh; Taj, Gohar; Kumar, Anil

2017-01-01

Alternaria brassicae and Alternaria brassicicola are two major phytopathogenic fungi which cause Alternaria blight, a recalcitrant disease on Brassica crops throughout the world, which is highly destructive and responsible for significant yield losses. Since no resistant source is available against Alternaria blight, therefore, efforts have been made in the present study to identify defense inducer molecules which can induce jasmonic acid (JA) mediated defense against the disease. It is believed that JA triggered defense response will prevent necrotrophic mode of colonization of Alternaria brassicae fungus. The JA receptor, COI1 is one of the potential targets for triggering JA mediated immunity through interaction with JA signal. In the present study, few mimicking compounds more efficient than naturally occurring JA in terms of interaction with COI1 were identified through virtual screening and molecular dynamics simulation studies. A high quality structural model of COI1 was developed using the protein sequence of Brassica rapa. This was followed by virtual screening of 767 analogs of JA from ZINC database for interaction with COI1. Two analogs viz. ZINC27640214 and ZINC43772052 showed more binding affinity with COI1 as compared to naturally occurring JA. Molecular dynamics simulation of COI1 and COI1-JA complex, as well as best screened interacting structural analogs of JA with COI1 was done for 50 ns to validate the stability of system. It was found that ZINC27640214 possesses efficient, stable, and good cell permeability properties. Based on the obtained results and its physicochemical properties, it is capable of mimicking JA signaling and may be used as defense inducers for triggering JA mediated resistance against Alternaria blight, only after further validation through field trials. PMID:28487711

The Excursion Set Theory of Halo Mass Functions, Halo Clustering, and Halo Growth

NASA Astrophysics Data System (ADS)

Zentner, Andrew R.

I review the excursion set theory with particular attention toward applications to cold dark matter halo formation and growth, halo abundance, and halo clustering. After a brief introduction to notation and conventions, I begin by recounting the heuristic argument leading to the mass function of bound objects given by Press and Schechter. I then review the more formal derivation of the Press-Schechter halo mass function that makes use of excursion sets of the density field. The excursion set formalism is powerful and can be applied to numerous other problems. I review the excursion set formalism for describing both halo clustering and bias and the properties of void regions. As one of the most enduring legacies of the excursion set approach and one of its most common applications, I spend considerable time reviewing the excursion set theory of halo growth. This section of the review culminates with the description of two Monte Carlo methods for generating ensembles of halo mass accretion histories. In the last section, I emphasize that the standard excursion set approach is the result of several simplifying assumptions. Dropping these assumptions can lead to more faithful predictions and open excursion set theory to new applications. One such assumption is that the height of the barriers that define collapsed objects is a constant function of scale. I illustrate the implementation of the excursion set approach for barriers of arbitrary shape. One such application is the now well-known improvement of the excursion set mass function derived from the "moving" barrier for ellipsoidal collapse. I also emphasize that the statement that halo accretion histories are independent of halo environment in the excursion set approach is not a general prediction of the theory. It is a simplifying assumption. I review the method for constructing correlated random walks of the density field in the more general case. I construct a simple toy model to illustrate that excursion set

Comparative study on the effect of chemicals on Alternaria blight in Indian mustard--a multi-location study in India.

PubMed

Meena, P D; Chattopadhyay, C; Kumar, A; Awasthi, R P; Singh, R; Kaur, S; Thomas, L; Goyal, P; Chand, P

2011-05-01

High severity of Altemaria blight disease is a major constraint in production of rapeseed-mustard in India. The aim of this study was to investigate the suppressive potential of chemicals viz., zinc sulphate, borax, sulphur, potash and calcium sulphate, aqueous extracts viz., Eucalyptus globosus (50 g l-1) leaf extract and garlic (Allium sativum) bulb (20 g l-1) extract, cow urine and bio-agents Trichoderma harzianum, Pseudomonas fluorescence in comparison with the recommended chemical fungicide (mancozeb), against foliar disease Alternaria blight of Indian mustard [Brassica juncea (L.) Czern. and Coss] under five different geographical locations of India. Mancozeb recorded the lowest mean severity (leaf: 33.1%; pod: 26.3%) of Alternaria blight with efficacy of garlic bulb extract alone (leaf = 34.4%; pod = 27.3%) or in combination with cow urine (leaf = 34.2%; pod = 28.6%) being statistically at par with the recommended chemical fungicide. Chemicals also proved effective in reducing Alternaria blight severity on leaves and pods of Indian mustard (leaf = 36.3-37.9%; pod = 27.5-30.1%). The effective treatments besides providing significant reduction in disease severity also enabled increase in dry seed yield of the crop (mancozeb = 2052 kg ha-1; garlic = 2006 kg ha-1; control = 1561 kg ha-1).

Reduction in bacterial ooze formation on immature fruitlets after preventive treatments of Fosethyl-Al against fire blight Erwinia amylovora.

PubMed

Deckers, T; Schoofs, H; Verjans, W; De Maeyer, L

2010-01-01

Fire blight, caused by the bacterium Erwinia amylovora (Burill Winslow et al.), is a very important bacterial disease on apple and pear orchards with devastating effects in some production area and in some years. Fire blight control consists in a whole strategy of measures that should start with control measures in and around the fruit tree nurseries. Only the use of Vacciplant (Laminarin), an inducer of the self-defence mechanism, is registered in Belgium since 2009. In other European countries Fosethyl-Al has been registered for fire blight control. Recently, research trials have been done at Pcfruit research station for several years on the activity of ALiette (fosethyl-Al) against fire blight. Fosethyl-Al, also a plant defence enhancing molecule, applied preventively 3 times at a dose of 3.75 kg/ha standard orchard (3 x 3000 g a.i./ha standard orchard), showed a reduction in the host susceptibility and decreased the disease development on artificial inoculated flower clusters and shoots. Also a clear reduction in the ooze droplet formation on artificially inoculated immature fruitlets has been observed with this molecule. This reduction in the bacterial ooze formation is considered as a very important factor in the spread of the disease in the orchard.

Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

USDA-ARS?s Scientific Manuscript database

Background: Desirable apple varieties are clonally propagated by grafting vegetative scions onto rootstocks. Rootstocks influence many phenotypic traits of the scion, including resistance to pathogens such as Erwinia amylovora, which causes fire blight, the most serious bacterial disease of apple....

Earlier occurrence and increased explanatory power of climate for the first incidence of potato late blight caused by Phytophthora infestans in Fennoscandia

PubMed Central

Wiik, Lars; Hannukkala, Asko; Andreasson, Erik; Chen, Deliang; Ou, Tinghai; Liljeroth, Erland; Lankinen, Åsa

2017-01-01

Background Late blight (caused by Phytophthora infestans) is a devastating potato disease that has been found to occur earlier in the season over the last decades in Fennoscandia. Up until now the reasons for this change have not been investigated. Possible explanations for this change are climate alterations, changes in potato production or changes in pathogen biology, such as increased fitness or changes in gene flow within P. infestans populations. The first incidence of late blight is of high economic importance since fungicidal applications should be typically applied two weeks before the first signs of late blight and are repeated on average once a week. Methods We use field observations of first incidence of late blight in experimental potato fields from five sites in Sweden and Finland covering a total of 30 years and investigate whether the earlier incidence of late blight can be related to the climate. Results We linked the field data to meteorological data and found that the previous assumption, used in common late blight models, that the disease only develops at relative humidity levels above 90% had to be rejected. Rather than the typically assumed threshold relationship between late blight disease development and relative humidity we found a linear relationship. Our model furthermore showed two distinct responses of late blight to climate. At the beginning of the observation time (in Sweden until the early 90s and in Finland until the 2000s) the link between climate and first incidence was very weak. However, for the remainder of the time period the link was highly significant, indicating a change in the biological properties of the pathogen which could for example be a change in the dominating reproduction mode or a physiological change in the response of the pathogen to climate. Conclusions The study shows that models used in decision support systems need to be checked and re-parametrized regularly to be able to capture changes in pathogen biology

American chestnut persistence in southwestern Virginia 80 years after chestnut blight introduction

Treesearch

Katie L. Burke

2010-01-01

Forest disease noticeably alters spatial patterns of a species' distribution and this alteration is complex when host mortality is affected by site qualities. In the 1930s, chestnut blight (Cryphonectria parasitica) spread through southwestern Virginia, after its introduction to New York in 1904.

Occurrence of Leaf Blight on Cosmos Caused by Alternaria cosmosa in Korea

PubMed Central

Deng, Jian Xin; Lee, Ji Hye; Paul, Narayan Chandra; Cho, Hye Sun; Lee, Hyang Burm; Yu, Seung Hun

2015-01-01

In 2011, a leaf blight disease was observed on cosmos (Cosmos bipinnatus) leaves in Nonsan, Korea. The causal pathogen was isolated and identified based on morphological and molecular approaches. Morphological characteristics of the pathogen matched well with the Alternaria cosmosa and also easily distinguishable from Alternaria zinniae reported from cosmos seeds by producing branched beak. Phylogenetically, the pathogen could not be distinguished from A. passiflorae based on the sequence analysis of a combined data set of Alt a1 and gpd genes. However, A. passiflorae was distinguished from the present species by having conidiophores with 4 to 5 conidiogenous loci. The results indicate that the present Alternaria species is A. cosmosa. Pathogenicity tests revealed that the isolate was pathogenic to the leaves of Cosmos bipinnatus. This is the first report of Alternaria blight disease caused by A. cosmosa on cosmos in Korea. PMID:25774114

Beyond assembly bias: exploring secondary halo biases for cluster-size haloes

DOE PAGES

Mao, Yao-Yuan; Zentner, Andrew R.; Wechsler, Risa H.

2017-12-01

Secondary halo bias, commonly known as ‘assembly bias’, is the dependence of halo clustering on a halo property other than mass. This prediction of the Λ Cold Dark Matter cosmology is essential to modelling the galaxy distribution to high precision and interpreting clustering measurements. As the name suggests, different manifestations of secondary halo bias have been thought to originate from halo assembly histories. We show conclusively that this is incorrect for cluster-size haloes. We present an up-to-date summary of secondary halo biases of high-mass haloes due to various halo properties including concentration, spin, several proxies of assembly history, and subhalomore » properties. While concentration, spin, and the abundance and radial distribution of subhaloes exhibit significant secondary biases, properties that directly quantify halo assembly history do not. In fact, the entire assembly histories of haloes in pairs are nearly identical to those of isolated haloes. In general, a global correlation between two halo properties does not predict whether or not these two properties exhibit similar secondary biases. For example, assembly history and concentration (or subhalo abundance) are correlated for both paired and isolated haloes, but follow slightly different conditional distributions in these two cases. Lastly, this results in a secondary halo bias due to concentration (or subhalo abundance), despite the lack of assembly bias in the strict sense for cluster-size haloes. Due to this complexity, caution must be exercised in using any one halo property as a proxy to study the secondary bias due to another property.« less

Beyond assembly bias: exploring secondary halo biases for cluster-size haloes

NASA Astrophysics Data System (ADS)

Mao, Yao-Yuan; Zentner, Andrew R.; Wechsler, Risa H.

2018-03-01

Secondary halo bias, commonly known as `assembly bias', is the dependence of halo clustering on a halo property other than mass. This prediction of the Λ Cold Dark Matter cosmology is essential to modelling the galaxy distribution to high precision and interpreting clustering measurements. As the name suggests, different manifestations of secondary halo bias have been thought to originate from halo assembly histories. We show conclusively that this is incorrect for cluster-size haloes. We present an up-to-date summary of secondary halo biases of high-mass haloes due to various halo properties including concentration, spin, several proxies of assembly history, and subhalo properties. While concentration, spin, and the abundance and radial distribution of subhaloes exhibit significant secondary biases, properties that directly quantify halo assembly history do not. In fact, the entire assembly histories of haloes in pairs are nearly identical to those of isolated haloes. In general, a global correlation between two halo properties does not predict whether or not these two properties exhibit similar secondary biases. For example, assembly history and concentration (or subhalo abundance) are correlated for both paired and isolated haloes, but follow slightly different conditional distributions in these two cases. This results in a secondary halo bias due to concentration (or subhalo abundance), despite the lack of assembly bias in the strict sense for cluster-size haloes. Due to this complexity, caution must be exercised in using any one halo property as a proxy to study the secondary bias due to another property.

Beyond assembly bias: exploring secondary halo biases for cluster-size haloes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mao, Yao-Yuan; Zentner, Andrew R.; Wechsler, Risa H.

Secondary halo bias, commonly known as ‘assembly bias’, is the dependence of halo clustering on a halo property other than mass. This prediction of the Λ Cold Dark Matter cosmology is essential to modelling the galaxy distribution to high precision and interpreting clustering measurements. As the name suggests, different manifestations of secondary halo bias have been thought to originate from halo assembly histories. We show conclusively that this is incorrect for cluster-size haloes. We present an up-to-date summary of secondary halo biases of high-mass haloes due to various halo properties including concentration, spin, several proxies of assembly history, and subhalomore » properties. While concentration, spin, and the abundance and radial distribution of subhaloes exhibit significant secondary biases, properties that directly quantify halo assembly history do not. In fact, the entire assembly histories of haloes in pairs are nearly identical to those of isolated haloes. In general, a global correlation between two halo properties does not predict whether or not these two properties exhibit similar secondary biases. For example, assembly history and concentration (or subhalo abundance) are correlated for both paired and isolated haloes, but follow slightly different conditional distributions in these two cases. Lastly, this results in a secondary halo bias due to concentration (or subhalo abundance), despite the lack of assembly bias in the strict sense for cluster-size haloes. Due to this complexity, caution must be exercised in using any one halo property as a proxy to study the secondary bias due to another property.« less

Functional characterization of WHY-WRKY75 transcriptional module in plant response to cassava bacterial blight.

PubMed

Liu, Wen; Yan, Yu; Zeng, Hongqiu; Li, Xiaolin; Wei, Yunxie; Liu, Guoyin; He, Chaozu; Shi, Haitao

2018-05-19

Cassava is a major food crop in tropical areas, but its productivity and quality are seriously limited by cassava bacterial blight. So far, the key factors regulating cassava immune response remain elusive. In this study, we identified three cassava Whirly genes (MeWHYs) in cassava variety of South China 124 (SC124), and explored the possible roles and utilization of MeWHYs in cassava disease resistance. Gene expression analysis revealed that the transcripts of three MeWHYs were commonly regulated by the highly conserved N-terminal epitope of f lagellin (flg22) and Xanthomonas axonopodis pv. manihotis Hainan (Xam HN) treatments. Overexpression of MeWHYs improved plant disease resistance against X. axonopodis pv. manihotis, while MeWHYs-silenced cassava plants by virus-induced gene silencing exhibited decreased disease resistance. Notably, MeWRKY75 physically interacted with three MeWHYs in yeast and in planta, and served as a transcriptional activator of MeWHY3. Moreover, the physical interaction between MeWHYs and MeWRKY75 promoted the transcriptional activities of each other. Consistently, MeWRKY75 also positively regulated disease resistance against cassava bacterial blight. Taken together, our observations suggested that MeWRKY75 and MeWHYs confer improved disease resistance against cassava bacterial blight through forming an interacting complex of MeWRKY75-MeWHY1/2/3 and transcriptional module of MeWRKY75-MeWHY3. This study facilitates our understanding of the positive effect of the MeWRKY75-MeWHY3 transcriptional module in plant disease resistance.

Controlled release of Pantoea agglomerans E325 for biocontrol of fire blight

USDA-ARS?s Scientific Manuscript database

Microencapsulation and controlled release of Pantoea agglomerans strain E325 (E325), which is an antagonist to bacterial pathogen (Erwinia amylovora) of fire blight, a devastating disease of apple and pear, have been investigated. Uniform core-shell alginate microcapsules (AMCs), 60-300 µm in diamet...

Early and late blight potential on Russet Burbank potato as affected by microclimate, cropping systems and irrigation management in North-eastern United States

USDA-ARS?s Scientific Manuscript database

Soil and irrigation management have been used to optimize crop production; however,their effects on microclimate, development, and potato diseases have not been adequately quantified. The effects of soil, crop, and water management on development of potato early blight and late blight were quantifie...

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton

USDA-ARS?s Scientific Manuscript database

Bacterial blight of cotton (BBC), caused by Xanthomonas citri subsp. malvacearum (Xcm), is among the most destructive diseases in cotton (Gossypium spp.). Transcription activator-like (TAL) effectors from Xcm are essential for BBC disease progression. Here, we carried out whole-genome PacBio-seque...

Analysis of rice PDR-like ABC transporter genes in sheath blight resistance

USDA-ARS?s Scientific Manuscript database

Sheath blight caused by Rhizoctonia solani is one of the most damaging diseases of rice worldwide. To understand the molecular mechanism of resistance, we identified 450 differentially expressed genes in a resistant rice cultivar Jasmine 85 after R. solani infection with a combination of DNA microar...

Induction of Xa10-like Genes in Rice Cultivar Nipponbare Confers Disease Resistance to Rice Bacterial Blight.

PubMed

Wang, Jun; Tian, Dongsheng; Gu, Keyu; Yang, Xiaobei; Wang, Lanlan; Zeng, Xuan; Yin, Zhongchao

2017-06-01

Bacterial blight of rice, caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive bacterial diseases throughout the major rice-growing regions in the world. The rice disease resistance (R) gene Xa10 confers race-specific disease resistance to X. oryzae pv. oryzae strains that deliver the corresponding transcription activator-like (TAL) effector AvrXa10. Upon bacterial infection, AvrXa10 binds specifically to the effector binding element in the promoter of the R gene and activates its expression. Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance. 'Nipponbare' rice carries two Xa10-like genes in its genome, of which one is the susceptible allele of the Xa23 gene, a Xa10-like TAL effector-dependent executor R gene isolated recently from 'CBB23' rice. However, the function of the two Xa10-like genes in disease resistance to X. oryzae pv. oryzae strains has not been investigated. Here, we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight. Both Xa10-Ni and Xa23-Ni provided disease resistance to X. oryzae pv. oryzae strains that deliver the matching artificially designed TAL effectors (dTALE). Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X. oryzae pv. oryzae strains that deliver AvrXa10. Xa10-Ni and Xa23-Ni knock-out mutants abolished dTALE-dependent disease resistance to X. oryzae pv. oryzae. Heterologous expression of Xa10-Ni and Xa23-Ni in Nicotiana benthamiana triggered cell death. The 19-amino-acid residues at the N-terminal regions of XA10 or XA10-Ni are dispensable for their function in inducing cell death in N. benthamiana and the C-terminal regions of XA10, XA10-Ni, and XA23-Ni are interchangeable among each other without affecting their function. Like XA10, both XA10-Ni and XA23-Ni locate to the endoplasmic reticulum (ER) membrane

[Blighted ovum in subfertile patients undergoing assisted reproductive technology].

PubMed

Nie, Qing-Wen; Hua, Rui; Zhou, Yao; Li, Hong; Yu, Yan-Hong

2017-07-20

To explore the incidence and risk factors of blighted ovum in subfertile patients undergoing assisted reproductive technology (ART). This retrospective analysis was conducted among 2378 patients who were pregnant following embryo transfer at our center from January, 2012 to December, 2015, including cases of early pregnancy losses and simultaneous live births. The cases with early pregnancy losses were divided into embryonic pregnancy and blighted ovum groups based on the presence or absence of an embryonic pole before dilation and curettage. The clinical data of the 3 groups were analyzed for comparisons of the maternal age, paternal age, BMI, AFC, basal FSH, bFSH/bLH, duration of infertility, Gn dosage, Gn days, serum estradiol on the day of HCG administration, endometrium thickness, number of oocyte retrieved, proportion of high-quality embryos transferred, serum β-HCG value on the 10th to 14th days of embryo transfer, infertility type and miscarriage times. The incidences of blighted ovum were compared between cases with different cycles, embryo stages, infertile factors and methods of fertilization. Maternal age and paternal age, BMI, duration of infertility, infertility type and miscarriage times differed significantly between cases with blighted ovum and those with live births. Serum β-HCG level was the lowest in blighted ovum group followed by embryonic pregnancy group and then by live birth group. Blastocyst transfer was associated with a significantly higher incidence of blighted ovum as compared with cleavage embryo transfer (11.6% vs 5.6%, P=0.000). No significant difference was found in the other parameters among the 3 groups (P>0.05). Adjusted logistic regression analysis showed that maternal age, β-HCG level and blastocyst transfer were risk factors of blighted ovum. Advanced maternal age, low β-HCG level and blastocyst transfer may increase the risk of blighted ovum possibly in association with gene imprinting errors during the early stage of

[Erwinia amylovora--the fire blight pathogen of trees in Ukraine].

PubMed

Iakovleva, L M; Moroz, S N; Shcherbina, T N; Ogorodnik, L E; Gvozdiak, R I; Patyka, V F

2014-01-01

Niduses of fire blight of fruit and ornamental trees have been found in the Kyiv and Vinnitsa regions of Ukraine. Pathogen Erwinia amylovora was isolated between April and October. The pathogen was often accompanied by bacteria Pseudomonas syringae pv. syringae. Artificial infection with a mixture of bacteria E. amylovora and P. syringae pv. syringae accelerates and enhances the disease process in the laboratory.

Improved genetic disease resistance solutions for potato

USDA-ARS?s Scientific Manuscript database

The Halterman Lab research program is focused on understanding the genetic basis of disease resistance in potato. Several diseases, such as late blight, early blight, potato virus Y, and verticillium wilt, are particularly problematic in Wisconsin. With the exception of early blight, major genes hav...

A real-time PCR assay for early detection of eastern filbert blight

USDA-ARS?s Scientific Manuscript database

Eastern filbert blight (EFB) is a devastating disease of European hazelnut, Corylus avellana, which causes economic losses in Oregon where 99% of the U.S. crop is produced. The causal fungus, Anisogramma anomala, is native to eastern North America, where it is found associated with the American haz...

Severe outbreak of bacterial panicle blight across Texas Rice Belt in 2010

USDA-ARS?s Scientific Manuscript database

Bacterial panicle blight symptoms have been observed in rice fields in Texas for many years, but it was not until 1996 that Burkholderia glumae was identified as the causal agent. Although it is generally considered a minor disease, there have been years where significant losses to yield and milling...

Multiple minor QTLs are responsible for Fusarium head blight resistance in Chinese wheat landrace Haiyanzhong

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), caused by Fusarium graminearum Schwabe, is a devastatingve disease in wheat (Triticum aestivum L.). Use of host resistance is one of the most effective strategies to minimize the disease damage. Haiyanzhong (HYZ) is a Chinese wheat landrace that shows a high level of resi...

Haloes gone MAD: The Halo-Finder Comparison Project

NASA Astrophysics Data System (ADS)

Knebe, Alexander; Knollmann, Steffen R.; Muldrew, Stuart I.; Pearce, Frazer R.; Aragon-Calvo, Miguel Angel; Ascasibar, Yago; Behroozi, Peter S.; Ceverino, Daniel; Colombi, Stephane; Diemand, Juerg; Dolag, Klaus; Falck, Bridget L.; Fasel, Patricia; Gardner, Jeff; Gottlöber, Stefan; Hsu, Chung-Hsing; Iannuzzi, Francesca; Klypin, Anatoly; Lukić, Zarija; Maciejewski, Michal; McBride, Cameron; Neyrinck, Mark C.; Planelles, Susana; Potter, Doug; Quilis, Vicent; Rasera, Yann; Read, Justin I.; Ricker, Paul M.; Roy, Fabrice; Springel, Volker; Stadel, Joachim; Stinson, Greg; Sutter, P. M.; Turchaninov, Victor; Tweed, Dylan; Yepes, Gustavo; Zemp, Marcel

2011-08-01

We present a detailed comparison of fundamental dark matter halo properties retrieved by a substantial number of different halo finders. These codes span a wide range of techniques including friends-of-friends, spherical-overdensity and phase-space-based algorithms. We further introduce a robust (and publicly available) suite of test scenarios that allow halo finder developers to compare the performance of their codes against those presented here. This set includes mock haloes containing various levels and distributions of substructure at a range of resolutions as well as a cosmological simulation of the large-scale structure of the universe. All the halo-finding codes tested could successfully recover the spatial location of our mock haloes. They further returned lists of particles (potentially) belonging to the object that led to coinciding values for the maximum of the circular velocity profile and the radius where it is reached. All the finders based in configuration space struggled to recover substructure that was located close to the centre of the host halo, and the radial dependence of the mass recovered varies from finder to finder. Those finders based in phase space could resolve central substructure although they found difficulties in accurately recovering its properties. Through a resolution study we found that most of the finders could not reliably recover substructure containing fewer than 30-40 particles. However, also here the phase-space finders excelled by resolving substructure down to 10-20 particles. By comparing the halo finders using a high-resolution cosmological volume, we found that they agree remarkably well on fundamental properties of astrophysical significance (e.g. mass, position, velocity and peak of the rotation curve). We further suggest to utilize the peak of the rotation curve, vmax, as a proxy for mass, given the arbitrariness in defining a proper halo edge. Airport code for Madrid, Spain

Two cycles of recurrent maternal half-sib selection reduce foliar late blight in a diploid hybrid Solanum phureja-S. stenotomum population by two-thirds

USDA-ARS?s Scientific Manuscript database

Foliar late blight, caused by Phytophthora infestans, is an important disease problem worldwide. Foliar resistance to late blight was found in a hybrid population of the cultivated diploid species Solanum phureja-S. stenotomum (phu-stn). The objective of this study was to determine if resistance t...

Spatio-temporal dynamics of Fusarium head blight and Trichothecene toxin types in Canada

USDA-ARS?s Scientific Manuscript database

In many parts of the world Fusarium graminearum is the primary causal agent of Fusarium head blight (FHB), a disease of cereal crops that adversely affects crop yield, food safety, and animal health. We previously demonstrated population structure associated with differences in trichothecene toxin t...

Halo Nuclei

NASA Astrophysics Data System (ADS)

Al-Khalili, Jim

2017-10-01

While neutron halos were discovered 30 years ago, this is the first book written on the subject of this exotic form of nuclei that typically contain many more neutrons than stable isotopes of those elements. It provides an introductory description of the halo and outlines the discovery and evidence for its existence. It also discusses different theoretical models of the halo's structure as well as models and techniques in reaction theory that have allowed us to study the halo. This is written at the graduate student (starting at PhD) level. The author of the book, Jim Al-Khalili, is a theoretician who published some of the key papers on the structure of the halo in the mid and late 90s and was the first to determine its true size. This monograph is based on review articles he has written on the mathematical models used to determine the halo structure and the reactions used to model that structure.

Profitability of integrated management of fusarium head blight in North Carolina winter wheat

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB) is one of the most difficult small-grain diseases to manage, due to the partial effectiveness of management techniques and the narrow window of time within which to apply fungicides profitably. The most effective management approach is to integrate cultivar resistance wit...

First report of F. meridionale causing Fusarium Head Blight of wheat in Mexico

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), also known as scab, is a destructive disease of small grain cereals caused by several species belonging to the Fusarium graminearum species complex (FGSC). Members of the FGSC produce trichothecene toxins that represent a threat to human and animal health (1). Despite the...

NMR metabolomics analysis of the effect of elevated CO2 on wheat resistance to Fusarium head blight

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), primarily induced by the filamentous ascomycete Fusarium graminearum (Fg), is one of the most damaging diseases in wheat and other small grain cereals worldwide. Current methods for disease control include utilization of less susceptible cultivars and treatment with fungi...

Some fungal endophytes from vegetable crops and their anti-oomycete activities against tomato late blight.

PubMed

Kim, H-Y; Choi, G J; Lee, H B; Lee, S-W; Lim, H K; Jang, K S; Son, S W; Lee, S O; Cho, K Y; Sung, N D; Kim, J-C

2007-03-01

To isolate endophytic fungi from vegetable plants and examine their in vivo anti-oomycete activity against Phytophthora infestans in tomato plants. Endophytic fungi were isolated from surface-sterilized plant tissues and anti-oomycete activity was measured by in vivo assay using tomato seedlings. Endophytic fungi showing potent anti-oomycete activity were identified by morphological characteristics and nuclear ribosomal ITS1-5.8S-ITS2 sequence analysis. A total of 152 isolates were obtained from 66 healthy tissue samples of cucumber, red pepper, tomato, pumpkin and Chinese cabbage and the fermentation broths of 23 isolates showed potent in vivo anti-oomycete activity against tomato late blight with control values over 90%. The Fusarium oxysporum strain EF119, which was isolated from roots of red pepper, showed the most potent disease control efficacy against tomato late blight. In dual-culture tests, it inhibited the growth of Pythium ultimum, P. infestans and Phytophthora capsici. Among endophytic fungi isolated from healthy tissues of vegetable plants, F. oxysporum EF119 showed the most potent in vivo anti-oomycete activity against tomato late blight and in vitro anti-oomycete activity against several oomycete pathogens. Endophytic fungi showing anti-oomycete activity in vitro and in vivo may be used as biocontrol agents particularly of tomato late blight.

The effect of cropping systems and irrigation management on development of potato early blight

USDA-ARS?s Scientific Manuscript database

Crop and soil management may modify canopy and belowground microclimate. However, their effects on potential development and control of early blight are not well documented. Crop management systems [Status Quo (SQ), Soil Conserving (SC), Soil Improving (SI), Disease Suppressive (DS), and Continuou...

Management of blight of bell pepper (Capsicum annuum var. grossum) caused by Drechslera bicolor.

PubMed

Jadon, Kuldeep Singh; Shah, Rakesh; Gour, Hari Narayan; Sharma, Pankaj

Sweet or bell pepper is a member of the Solanaceae family and is regarded as one of the most popular and nutritious vegetable. Blight, in the form of leaf and fruit blight, has been observed to infect bell pepper crops cultivated at the horticulture farm in Rajasthan College of Agriculture, Udaipur, India. Based on disease severity, we attempted to curb this newly emerged problem using different fungicides, plant extracts, bio-control agents, and commercial botanicals against the fungus in laboratory and pot experiments. Bio-control agent Trichoderma viride and plant growth promoting Rhizobacteria (PGPR) isolate Neist-2 were found to be quite effective against bell pepper blight. All evaluated fungicides, botanicals, commercial botanicals, and bio-control agents in vitro were further studied as seed dressers and two foliar sprays at ten days interval in pot experiments. The combinations of Vitavax, PGPR isolate Neist-2, and Mehandi extract were found to be very effective against bell pepper blight followed by Vitavax, T. viride, and Mehandi extract used individually. All treatments in the pot experiments were found to significantly reduce seedling mortality and enhance plant biomass of bell pepper. Thus, these experimental findings suggest that a better integrated management of bell pepper blight could be achieved by conducting field trials in major bell pepper- and chilli-cultivated areas of the state. Besides fungicides, different botanicals and commercial botanicals also seem to be promising treatment options. Therefore, the outcome of the present study provides an alternate option of fungicide use in minimizing loss caused by Drechslera bicolor. Copyright © 2016 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Efficacy of Newer Molecules, Bioagents and Botanicals against Maydis Leaf Blight and Banded Leaf and Sheath Blight of Maize

PubMed Central

Malik, Vinod Kumar; Singh, Manjeet; Hooda, Karambir Singh; Yadav, Naresh Kumar; Chauhan, Prashant Kumar

2018-01-01

Maize (Zea mays L.; 2N=20) is major staple food crop grown worldwide adapted to several biotic and abiotic stresses. Maydis leaf blight (MLB) and banded leaf and sheath blight (BLSB) are serious foliar fungal diseases may cause up to 40% and 100% grain yield loss, respectively. The present studies were undertaken to work out the efficacy of chemicals, botanicals and bioagents for the management of MLB and BLSB under field condition for two seasons Kharif 2014 and 2015. Five molecules (propiconazole 25 EC, hexaconazole 25 EC, carbendazim 50 WP, mancozeb 75 WP and carbedazim 12 WP + mancozeb 63 WP), two bioagents i.e. Trichoderma harzianum and T. viridae and three botanicals namely azadirachtin, sarpagandha and bel pathar were tested for their efficacy against MLB. Eight newer fungicides viz., difenconazole 250 SC, hexaconazole 5 EC, carbendazim 50WP, validamycin 3 L, tebuconazole 250 EC, trifloxystrobin 50 WG + tebuconazole 50 WG, azoxystrobin 250 EC and pencycuron 250 SC were evaluated against BLSB. Analysis revealed significant effects of propiconazole at 0.1%, carbendazim 12 WP + mancozeb 63 WP at 0.125% and sarpagandha leaves at 10% against MLB pathogen, whereas validamycin at 0.1% and trifloxystrobin 25 WG + tebuconazole 50 WG at 0.05% were found effective against BLSB. The slow rate of disease control virtually by the bioagents might have not shown instant effect on plant response to the yield enhancing components. The identified sources of management can be used further in strengthening the plant protection in maize against MLB and BLSB. PMID:29628818

Efficacy of Newer Molecules, Bioagents and Botanicals against Maydis Leaf Blight and Banded Leaf and Sheath Blight of Maize.

PubMed

Malik, Vinod Kumar; Singh, Manjeet; Hooda, Karambir Singh; Yadav, Naresh Kumar; Chauhan, Prashant Kumar

2018-04-01

Maize ( Zea mays L.; 2N=20) is major staple food crop grown worldwide adapted to several biotic and abiotic stresses. Maydis leaf blight (MLB) and banded leaf and sheath blight (BLSB) are serious foliar fungal diseases may cause up to 40% and 100% grain yield loss, respectively. The present studies were undertaken to work out the efficacy of chemicals, botanicals and bioagents for the management of MLB and BLSB under field condition for two seasons Kharif 2014 and 2015. Five molecules (propiconazole 25 EC, hexaconazole 25 EC, carbendazim 50 WP, mancozeb 75 WP and carbedazim 12 WP + mancozeb 63 WP), two bioagents i.e. Trichoderma harzianum and T. viridae and three botanicals namely azadirachtin, sarpagandha and bel pathar were tested for their efficacy against MLB. Eight newer fungicides viz., difenconazole 250 SC, hexaconazole 5 EC, carbendazim 50WP, validamycin 3 L, tebuconazole 250 EC, trifloxystrobin 50 WG + tebuconazole 50 WG, azoxystrobin 250 EC and pencycuron 250 SC were evaluated against BLSB. Analysis revealed significant effects of propiconazole at 0.1%, carbendazim 12 WP + mancozeb 63 WP at 0.125% and sarpagandha leaves at 10% against MLB pathogen, whereas validamycin at 0.1% and trifloxystrobin 25 WG + tebuconazole 50 WG at 0.05% were found effective against BLSB. The slow rate of disease control virtually by the bioagents might have not shown instant effect on plant response to the yield enhancing components. The identified sources of management can be used further in strengthening the plant protection in maize against MLB and BLSB.

Bioprospecting endophytic diazotrophic Lysinibacillus sphaericus as biocontrol agents of rice sheath blight disease.

PubMed

Shabanamol, S; Sreekumar, J; Jisha, M S

2017-10-01

The present study tried to explore the possible in vitro biocontrol mechanisms of Lysinibacillus sphaericus , a diazotrophic endophyte from rice against the rice sheath blight pathogen Rhizoctonia solani. The in vivo biocontrol potential of the isolate and the induction of systemic resistance under greenhouse conditions have also been experimented employing different treatments with positive control carbendazim, the chemical fungicide. The endophytic isolate showed 100% growth inhibition of the fungal pathogen via volatile organic compound production and was positive for the production of siderophores, biosurfactants, HCN, and ammonia. Under greenhouse conditions, foliar and soil application of L. sphaericus significantly decreased the percentage of disease incidence. All bacterized treatments are superior to chemical fungicide treatment. Application of L. sphaericus in single and combination treatments induces systemic resistance as evident from the significant accumulation of defense enzymes such as peroxides, polyphenol oxides and phenylalanine ammonia in addition to the increase of phenolic compounds. The results biologically prospect endophytic diazotroph L. sphaericus as a potent plant growth promoter with excellent biocontrol efficiency.

Halo assembly bias and the tidal anisotropy of the local halo environment

NASA Astrophysics Data System (ADS)

Paranjape, Aseem; Hahn, Oliver; Sheth, Ravi K.

2018-05-01

We study the role of the local tidal environment in determining the assembly bias of dark matter haloes. Previous results suggest that the anisotropy of a halo's environment (i.e. whether it lies in a filament or in a more isotropic region) can play a significant role in determining the eventual mass and age of the halo. We statistically isolate this effect, using correlations between the large-scale and small-scale environments of simulated haloes at z = 0 with masses between 1011.6 ≲ (m/h-1 M⊙) ≲ 1014.9. We probe the large-scale environment, using a novel halo-by-halo estimator of linear bias. For the small-scale environment, we identify a variable αR that captures the tidal anisotropy in a region of radius R = 4R200b around the halo and correlates strongly with halo bias at fixed mass. Segregating haloes by αR reveals two distinct populations. Haloes in highly isotropic local environments (αR ≲ 0.2) behave as expected from the simplest, spherically averaged analytical models of structure formation, showing a negative correlation between their concentration and large-scale bias at all masses. In contrast, haloes in anisotropic, filament-like environments (αR ≳ 0.5) tend to show a positive correlation between bias and concentration at any mass. Our multiscale analysis cleanly demonstrates how the overall assembly bias trend across halo mass emerges as an average over these different halo populations, and provides valuable insights towards building analytical models that correctly incorporate assembly bias. We also discuss potential implications for the nature and detectability of galaxy assembly bias.

Enhancement of Fusarium Head Blight Detection in Free-Falling Wheat Kernels Using a Bichromatic Pulsed LED Design

USDA-ARS?s Scientific Manuscript database

Fusarium Head Blight is a worldwide disease of small cereals grains such as wheat. The disease is food safety concern because it produces the metabolite, deoxynivalenol (DON), which is moderately toxic to humans and non-ruminant animals. The current study was implemented to develop more efficient me...

A barley UDP-glucosyltransferase inactivates nivalenol and provides Fusarium head blight resistance in transgenic wheat

USDA-ARS?s Scientific Manuscript database

Fusarium Head Blight is a disease of cereal crops that causes severe yield losses and mycotoxin contamination of grain. The main causal pathogen, Fusarium graminearum, produces the trichothecene toxins deoxynivalenol or nivalenol as virulence factors. Nivalenol-producing isolates are most prevalent ...

Integration of fungicide application and cultivar resistance to manage fusarium head blight in wheat

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), also known as scab, is a destructive disease of wheat and other small grain cereals. Losses are compounded by the associated mycotoxin deoxynivalenol (DON) which contaminates grain. This chapter provides a brief review of FHB of wheat in North America including occurren...

Use of mycelium and detached leaves in bioassays for assessing resistance to boxwood blight

USDA-ARS?s Scientific Manuscript database

Boxwood blight caused by Calonectria pseudonaviculata is a newly emergent disease of boxwood (Buxus L.) in the United States that causes leaf drop, stem lesions, and plant death. A rapid and reliable laboratory assay that enables screening hundreds of boxwood genotypes for resistance to boxwood blig...

Mummy Berry Fruit Rot and Shoot Blight Incidence in Blueberry: Prediction, Ranking, and Stability in a Long-term Study

USDA-ARS?s Scientific Manuscript database

Mummy berry is an important disease of cultivated blueberry. The disease has two distinct phases; a blighting phase initiated by ascospores and a fruit infection stage initiated by conidia. In this study we investigated blueberry cultivar resistance to both phases of the disease and, utilizing ‘stan...

Germplasm Evaluation for Resistance and Monitoring Bacterial Panicle Blight Disease of Rice in Arkansas, 2016

USDA-ARS?s Scientific Manuscript database

Bacterial panicle blight (BPB), caused by a bacterial pathogen, mainly Burkholderia glumae, has posed a higher level of threat to rice production worldwide in recent years. Here we report the response of over 300 entries evaluated by artificially inoculating with a bacterial suspension under field c...

The halo Boltzmann equation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Biagetti, Matteo; Desjacques, Vincent; Kehagias, Alex

2016-04-01

Dark matter halos are the building blocks of the universe as they host galaxies and clusters. The knowledge of the clustering properties of halos is therefore essential for the understanding of the galaxy statistical properties. We derive an effective halo Boltzmann equation which can be used to describe the halo clustering statistics. In particular, we show how the halo Boltzmann equation encodes a statistically biased gravitational force which generates a bias in the peculiar velocities of virialized halos with respect to the underlying dark matter, as recently observed in N-body simulations.

Relative Susceptibility of Quince, Pear, and Apple Cultivars to Fire Blight Following Greenhouse Inoculation

USDA-ARS?s Scientific Manuscript database

Fire blight caused by Erwinia amylovora (EA) is one of the most serious diseases of plants in the family Rosaceae, and Quince (Cydonia oblonga Mill.) is considered one of the most susceptible host genera. Apple (Malus sp.) and pear (Pyrus sp.) cultivars ranging from most susceptible to most resistan...

Development of the First Cisgenic Apple with Increased Resistance to Fire Blight

PubMed Central

Kost, Thomas D.; Gessler, Cesare; Jänsch, Melanie; Flachowsky, Henryk; Patocchi, Andrea; Broggini, Giovanni A. L.

2015-01-01

The generation and selection of novel fire blight resistant apple genotypes would greatly improve the management of this devastating disease, caused by Erwinia amylovora. Such resistant genotypes are currently developed by conventional breeding, but novel breeding technologies including cisgenesis could be an alternative approach. A cisgenic apple line C44.4.146 was regenerated using the cisgene FB_MR5 from wild apple Malus ×robusta 5 (Mr5), and the previously established method involving A. tumefaciens-mediated transformation of the fire blight susceptible cultivar ‘Gala Galaxy’ using the binary vector p9-Dao-FLPi. The line C44.4.146 was shown to carry only the cisgene FB_MR5, controlled by its native regulatory sequences and no transgenes were detected by PCR or Southern blot following heat induced recombinase-mediated elimination of the selectable markers. Although this line contains up to 452 bp of vector sequences, it still matches the original definition of cisgenesis. A single insertion of T-DNA into the genome of 'Gala Galaxy' in chromosome 16 was identified. Transcription of FB_MR5 in line C44.4.146 was similar to the transcription in classically bred descendants of Mr5. Three independent shoot inoculation experiments with a Mr5 avirulent strain of Erwinia amylovora were performed using scissors or syringe. Significantly lower disease symptoms were detected on shoots of the cisgenic line compared to those of untransformed 'Gala Galaxy'. Despite the fact that the pathogen can overcome this resistance by a single nucleotide mutation, this is, to our knowledge, the first prototype of a cisgenic apple with increased resistance to fire blight. PMID:26624292

Genotyping of the Valencia peanut core collection with a molecular marker associated with Sclerotinia blight resistance

USDA-ARS?s Scientific Manuscript database

Cultivated peanut, the second most economically important legume crop throughout the United States and the third most important oilseed in the world, is consistently threatened by various diseases and pests. Sclerotinia blight, (causal agents Sclerotinia sclerotiorum (S. sclerotiorum) and Sclerotin...

HaloSat - A CubeSat to Study the Hot Galactic Halo

NASA Astrophysics Data System (ADS)

Kaaret, Philip

2017-01-01

Observations of the nearby universe fail to locate about half of the baryons observed in the early universe. The missing baryons may be in hot galactic halos. HaloSat is a CubeSat designed to map oxygen line emission (O VII and O VIII) around the Milky Way in order to constrain the mass and spatial distribution of hot gas in the halo. HaloSat has a grasp competitive with current X-ray observatories. Its observing program will be optimized to minimize contributions from solar wind charge exchange (SWCX) emission that limit the accuracy of current measurements. We will describe the HaloSat mission concept, progress towards its implementation, and plans for archiving and distribution of the data.

A severe epidemic of Marssonina leaf blight on quaking aspen in Northern Utah

Treesearch

Roy O. Harniss; David L. Nelson

1984-01-01

The extent of Marssonina leaf blight (Marssonina populi) on quaking aspen (Populus tremuloides) was observed in northern Utah and adjacent States in 1981 aand 1982. Area of the epidemic and symptoms of the disease are described. On 1,000 acres (405 hal) in northern Utah, infection levels were 6 percent slight, 12 percent light, 32 percent moderate, 16 percent...

Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia

USDA-ARS?s Scientific Manuscript database

Over the past few years, symptoms akin to late blight disease have been reported on a variety of crop plants in South America. Despite the economic importance of these crops, the causal agents of the diseases belonging to the genus Phytophthora have not been completely characterized. In this study, ...

Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae

USDA-ARS?s Scientific Manuscript database

Bacterial stem blight caused by Pseudomonas syringae pv. syringae is a common disease of alfalfa (Medicago sativa L.) in the central and western U.S. and has been reported in Australia and Europe. The disease is not always recognized because symptoms are often associated with frost damage. Two culti...

Validation of Fusarium head blight resistance QTL using the NC-Neuse / Bess doubled haploid population

USDA-ARS?s Scientific Manuscript database

Fusarium Head Blight (FHB) is one of the most damaging diseases of wheat. It lowers the grain yield and quality, and contaminates grain with the mycotoxin deoxynivalenol (DON). Genetic resistance is a critical control measure and breeding objective. Many studies have focused on the genetic basis of ...

RiceCAP: Comparison of sheath blight QTLs in two Bengal/O. nivara advanced backcross mapping populations

USDA-ARS?s Scientific Manuscript database

Two advanced backcross populations were developed between a popular southern US tropical japonica rice (Oryza sativa L.) cultivar Bengal and two different of Oryza nivara (IRGC100898; IRGC104705) accessions to identify quantitative trait loci (QTLs) related to sheath blight (SB) disease resistance. ...

HaloSat- A CubeSat to Study the Hot Galactic Halo

NASA Astrophysics Data System (ADS)

Kaaret, Philip

We propose to develop, build, and fly HaloSat, a CubeSat capable of measuring the oxygen line emission from the hot Galactic halo. A dedicated CubeSat enables an instrument design and observing strategy to maximize the halo signal while minimizing foregrounds from solar wind charge exchange interactions within the solar system. We will use HaloSat to map the distribution of hot gas in the Milky Way and determine whether it fills an extended, and thus massive halo, or whether the halo is compact, and thus does not contribute significantly to the total mass of the Milky Way. HaloSat can be accomplished at modest cost using a CubeSat, a novel platform for space astrophysics missions. We will use a commercially available CubeSat bus and commercially available X-ray detectors to reduce development risk and minimize overall mission cost. HaloSat builds on the initiatives of GSFC/Wallops Flight Facility (WFF) in the development of CubeSats for low cost access to space and relies on the technical expertise of WFF personnel for spacecraft and mission design and operations. The team, from University of Iowa (UI), GSFC, Johns Hopkins, and CNRS (France), contains experts in X-ray detector development and data analysis and the astrophysics of hot plasmas and Galactic structure. The UI team will include a number of junior researchers (undergraduates, graduate students, and a postdoc) and help train them for future leadership roles on NASA space flight missions.

Halo vest instrumentation

NASA Astrophysics Data System (ADS)

Huston, Dryver R.; Krag, Martin

1996-05-01

The halo vest is a head and neck immobilization system that is often used on patients that are recovering from cervical trauma or surgery. The halo vest system consists of a rigid halo that is firmly attached to the skull, an upright support structure for stabilization and immobilization, and a torso-enveloping vest. The main purpose of this study was to measure the forces that are carried by the halo-vest structure as the subject undergoes various activities of daily living and external loading for different vest designs. A tethered strain gage load cell based instrumentation system was used to take these load measurements on ten different subjects. Three different halo-vest systems were evaluated. The primary difference between the vests was the amount of torso coverage and the use of shoulder straps. The loads were measured, analyzed and used to compare the vests and to create a model of halo-vest-neck mechanics. Future applications of this technology to standalone data logging, pin-load measuring and biofeedback applications are discussed.

Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.)

PubMed Central

Hossain, Md Kamal; Jena, Kshirod Kumar; Bhuiyan, Md Atiqur Rahman; Wickneswari, Ratnam

2016-01-01

Sheath blight is considered the most significant disease of rice and causes enormous yield losses over the world. Breeding for resistant varieties is the only viable option to combat the disease efficiently. Seventeen diverged rice genotypes along with 17 QTL-linked SSR markers were evaluated under greenhouse conditions. Pearson’s correlation showed only the flag leaf angle had a significant correlation with sheath blight resistance under greenhouse screening. Multivariate analysis based on UPGMA clustering and principal component analysis (PCA) indicated that the flag leaf angle, flag leaf length, and plant compactness were significantly associated with the following SSR marker alleles: RM209 (116,130), RM202 (176), RM224 (126), RM257 (156), RM426 (175), and RM6971 (196), which are linked to the SB QTLs: QRlh11, qSBR11-3, qSBR11-1, qSBR9-1, qShB3-2, and qSB-9. A Mantel test suggested a weak relationship between the observed phenotypes and allelic variation patterns, implying the independent nature of morphological and molecular variations. Teqing and Tetep were found to be the most resistant cultivars. IR65482-4-136-2-2, MR219-4, and MR264 showed improved resistance potentials. These results suggest that the morphological traits and QTLs which have been found to associate with sheath blight resistance are a good choice to enhance resistance through pyramiding either 2 QTLs or QTLs and traits in susceptible rice cultivars. PMID:27795687

The Milky Way, the Galactic halo, and the Halos of Galaxies

NASA Astrophysics Data System (ADS)

Gerhard, Ortwin

2015-08-01

The Milky Way, "our" Galaxy, is currently the subject of intense study with many ground-based surveys, in anticipation of upcoming results from the GAIA mission. From this work we have been learning about the full three-dimensional structure of the Galactic box/peanut bulge, the distribution of stars in the bar and disk, and the many streams in the Galactic halo. The data tell us that most of the Galactic bulge formed from the disk, and that a large fraction of the Galactic halo has been accreted from outside. Similarly, in many external galaxy halos there is now evidence for tidal streams and accretion of satellites. To see these features requires exquisite data - mostly very deep photometry, but some halo substructures have also been found with kinematic data. These observations illustrate how galaxy halos are still growing, and sometimes can be used to "time" the accretion events. In comparison with cosmological simulations, the structure of galaxy halos gives us a vivid illustration of the hierarchical nature of our Universe.

Mapping QTLs for Fusarium Head Blight Resistance in an Interspecific Wheat Population

PubMed Central

Giancaspro, Angelica; Giove, Stefania L.; Zito, Daniela; Blanco, A.; Gadaleta, Agata

2016-01-01

Fusarium head blight (scab) is one of the most widespread and damaging diseases of wheat, causing grain yield and quality losses and production of harmful mycotoxins. Development of resistant varieties is hampered by lack of effective resistance sources in the tetraploid wheat primary gene pool. Here we dissected the genetic basis of resistance in a new durum wheat (Triticum turgidum ssp. durum) Recombinant inbred lines (RILs) population obtained by crossing an hexaploid resistant line and a durum susceptible cultivar. A total of 135 RILs were used for constituting a genetic linkage map and mapping loci for head blight incidence, severity, and disease-related plant morphological traits (plant height, spike compactness, and awn length). The new genetic map accounted for 4,366 single nucleotide polymorphism markers assembled in 52 linkage groups covering a total length of 4,227.37 cM. Major quantitative trait loci (QTL) for scab incidence and severity were mapped on chromosomes 2AS, 3AL, and 2AS, 2BS, 4BL, respectively. Plant height loci were identified on 3A, 3B, and 4B, while major QTL for ear compactness were found on 4A, 5A, 5B, 6A, and 7A. In this work, resistance to Fusarium was transferred from hexaploid to durum wheat, and correlations between the disease and morphological traits were assessed. PMID:27746787

Elevated [CO2] compromises both Type I and Type II wheat resistance to Fusarium head blight

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB) is one of the world’s most devastating wheat diseases, and results in significant yield loss and contamination of grain with harmful mycotoxins called trichothecenes. Despite emerging risks of increased mycotoxin contamination in food and feed associated with climate chang...

Development of Durum Wwheat Germplasm with Enhanced Resistance to Fusarium Head Blight Derived from Emmer Wheat

USDA-ARS?s Scientific Manuscript database

Durum wheat (Triticum turgidum L. subsp. durum) is a unique class of commercial wheat specifically for making pasta products. Durum production has been seriously challenged by the Fusarium head blight (FHB) disease in the United States in the past decade. Although utilization of resistant cultivar...

Galaxy and Mass Assembly (GAMA): halo formation times and halo assembly bias on the cosmic web

NASA Astrophysics Data System (ADS)

Tojeiro, Rita; Eardley, Elizabeth; Peacock, John A.; Norberg, Peder; Alpaslan, Mehmet; Driver, Simon P.; Henriques, Bruno; Hopkins, Andrew M.; Kafle, Prajwal R.; Robotham, Aaron S. G.; Thomas, Peter; Tonini, Chiara; Wild, Vivienne

2017-09-01

We present evidence for halo assembly bias as a function of geometric environment (GE). By classifying Galaxy and Mass Assembly (GAMA) galaxy groups as residing in voids, sheets, filaments or knots using a tidal tensor method, we find that low-mass haloes that reside in knots are older than haloes of the same mass that reside in voids. This result provides direct support to theories that link strong halo tidal interactions with halo assembly times. The trend with GE is reversed at large halo mass, with haloes in knots being younger than haloes of the same mass in voids. We find a clear signal of halo downsizing - more massive haloes host galaxies that assembled their stars earlier. This overall trend holds independently of GE. We support our analysis with an in-depth exploration of the L-Galaxies semi-analytic model, used here to correlate several galaxy properties with three different definitions of halo formation time. We find a complex relationship between halo formation time and galaxy properties, with significant scatter. We confirm that stellar mass to halo mass ratio, specific star formation rate (SFR) and mass-weighed age are reasonable proxies of halo formation time, especially at low halo masses. Instantaneous SFR is a poor indicator at all halo masses. Using the same semi-analytic model, we create mock spectral observations using complex star formation and chemical enrichment histories, which approximately mimic GAMA's typical signal-to-noise ratio and wavelength range. We use these mocks to assert how well potential proxies of halo formation time may be recovered from GAMA-like spectroscopic data.

Galactic Warps in Triaxial Halos

NASA Astrophysics Data System (ADS)

Jeon, Myoungwon; Kim, Sungsoo S.; Ann, Hong Bae

2009-05-01

We study the behavior of galactic disks in triaxial halos both numerically and analytically to see if warps can be excited and sustained in triaxial potentials. We consider the following two scenarios: (1) galactic disks that are initially tilted relative to the equatorial plane of the halo (for a pedagogical purpose), and (2) tilted infall of dark matter relative to the equatorial plane of the disk and the halo. With numerical simulations of 100,000 disk particles in a fixed halo potential, we find that in triaxial halos, warps can be excited and sustained just as in spherical or axisymmetric halos but they show some oscillatory behavior and even can be transformed to a polar-ring system if the halo has a prolate-like triaxiality. The nonaxisymmetric component of the halo causes the disk to nutate, and the differential nutation between the inner and outer parts of the disk generally makes the magnitude of the warp slightly diminish and fluctuate. We also find that warps are relatively weaker in oblate and oblate-like triaxial halos, and since these halos are the halo configurations of disk galaxies inferred by cosmological simulations, our results are consistent with the fact that most of the observed warps are quite weak. We derive approximate formulae for the torques exerted on the disk by the triaxial halo and the dark matter torus, and with these formulae we successfully describe the behavior of the disks in our simulations. The techniques used in deriving these formulae could be applied for realistic halos with more complex structures.

Durum wheat genetic stocks involving chromosome 1E of diploid wheatgrass: Resistance to Fusarium head blight

USDA-ARS?s Scientific Manuscript database

Durum wheat (Triticum turgidum L., 2n = 4x = 28; AABB genomes) is the preferred wheat for preparing pasta products. Current durum cultivars have little resistance to a ravaging fungal disease, Fusarium head blight (FHB), or scab. In our Durum Germplasm Enhancement (DGE) project, we previously show...

Iturin levels on wheat spikes linked to biological control of fusarium head blight by Bacillus amyloliquefaciens

USDA-ARS?s Scientific Manuscript database

The TrigoCor strain of Bacillus amyloliquefaciens provides consistent control against Fusarium head blight of wheat in controlled settings but there is a lack of disease and deoxynivalenol suppression in field settings. Since production of antifungal compounds is thought to be the main mode of actio...

First report of boxwood blight caused by Calonectria pseudonaviculata in Delaware, Maryland, New Jersey and New York

USDA-ARS?s Scientific Manuscript database

Boxwood (Buxus spp.) are commercially important evergreen ornamental plants with an annual market value of over $103 million in the United States. The recent U.S. incursion of boxwood blight disease caused by the fungus Calonectria pseudonaviculata (syn. Cylindrocladium pseudonaviculatum, Cy. buxico...

Genotypic and phenotypic characterization of Cryptococcus flavescens, beneficial biocontrol agents for controlling Fusarium head blight of wheat

USDA-ARS?s Scientific Manuscript database

Cryptococcus flavescens strain OH182.9_3C (3C) previously displayed significant biological control activity against Fusarium head blight, a globally important disease of wheat; however, the diversity within C. flavescens has not been previously characterized. Multilocus sequence typing was performed...

The Milky Way, the Galactic Halo, and the Halos of Galaxies

NASA Astrophysics Data System (ADS)

Gerhard, Ortwin

2016-08-01

The Milky Way, ``our'' Galaxy, is currently the subject of intense study with many ground-based surveys, in anticipation of upcoming results from the Gaia mission. From this work we have been learning about the full three-dimensional structure of the Galactic box/peanut bulge, the distribution of stars in the bar and disk, and the many streams and substructures in the Galactic halo. The data indicate that a large fraction of the Galactic halo has been accreted from outside. Similarly, in many external galaxy halos there is now evidence for tidal streams and accretion of satellites. To study these features requires exquisite, deep photometry and spectroscopy. These observations illustrate how galaxy halos are still growing, and sometimes can be used to ``time'' the accretion events. In comparison with cosmological simulations, the structure of galaxy halos gives us a vivid illustration of the hierarchical nature of our Universe.

Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease.

PubMed

Mosquera, Teresa; Alvarez, Maria Fernanda; Jiménez-Gómez, José M; Muktar, Meki Shehabu; Paulo, Maria João; Steinemann, Sebastian; Li, Jinquan; Draffehn, Astrid; Hofmann, Andrea; Lübeck, Jens; Strahwald, Josef; Tacke, Eckhard; Hofferbert, Hans-Reinhardt; Walkemeier, Birgit; Gebhardt, Christiane

2016-01-01

The oomycete Phytophthora infestans causes late blight of potato, which can completely destroy the crop. Therefore, for the past 160 years, late blight has been the most important potato disease worldwide. The identification of cultivars with high and durable field resistance to P. infestans is an objective of most potato breeding programs. This type of resistance is polygenic and therefore quantitative. Its evaluation requires multi-year and location trials. Furthermore, quantitative resistance to late blight correlates with late plant maturity, a negative agricultural trait. Knowledge of the molecular genetic basis of quantitative resistance to late blight not compromised by late maturity is very limited. It is however essential for developing diagnostic DNA markers that facilitate the efficient combination of superior resistance alleles in improved cultivars. We used association genetics in a population of 184 tetraploid potato cultivars in order to identify single nucleotide polymorphisms (SNPs) that are associated with maturity corrected resistance (MCR) to late blight. The population was genotyped for almost 9000 SNPs from three different sources. The first source was candidate genes specifically selected for their function in the jasmonate pathway. The second source was novel candidate genes selected based on comparative transcript profiling (RNA-Seq) of groups of genotypes with contrasting levels of quantitative resistance to P. infestans. The third source was the first generation 8.3k SolCAP SNP genotyping array available in potato for genome wide association studies (GWAS). Twenty seven SNPs from all three sources showed robust association with MCR. Some of those were located in genes that are strong candidates for directly controlling quantitative resistance, based on functional annotation. Most important were: a lipoxygenase (jasmonate pathway), a 3-hydroxy-3-methylglutaryl coenzyme A reductase (mevalonate pathway), a P450 protein (terpene biosynthesis

Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease

PubMed Central

Jiménez-Gómez, José M.; Muktar, Meki Shehabu; Paulo, Maria João; Steinemann, Sebastian; Li, Jinquan; Draffehn, Astrid; Hofmann, Andrea; Lübeck, Jens; Strahwald, Josef; Tacke, Eckhard; Hofferbert, Hans-Reinhardt; Walkemeier, Birgit; Gebhardt, Christiane

2016-01-01

The oomycete Phytophthora infestans causes late blight of potato, which can completely destroy the crop. Therefore, for the past 160 years, late blight has been the most important potato disease worldwide. The identification of cultivars with high and durable field resistance to P. infestans is an objective of most potato breeding programs. This type of resistance is polygenic and therefore quantitative. Its evaluation requires multi-year and location trials. Furthermore, quantitative resistance to late blight correlates with late plant maturity, a negative agricultural trait. Knowledge of the molecular genetic basis of quantitative resistance to late blight not compromised by late maturity is very limited. It is however essential for developing diagnostic DNA markers that facilitate the efficient combination of superior resistance alleles in improved cultivars. We used association genetics in a population of 184 tetraploid potato cultivars in order to identify single nucleotide polymorphisms (SNPs) that are associated with maturity corrected resistance (MCR) to late blight. The population was genotyped for almost 9000 SNPs from three different sources. The first source was candidate genes specifically selected for their function in the jasmonate pathway. The second source was novel candidate genes selected based on comparative transcript profiling (RNA-Seq) of groups of genotypes with contrasting levels of quantitative resistance to P. infestans. The third source was the first generation 8.3k SolCAP SNP genotyping array available in potato for genome wide association studies (GWAS). Twenty seven SNPs from all three sources showed robust association with MCR. Some of those were located in genes that are strong candidates for directly controlling quantitative resistance, based on functional annotation. Most important were: a lipoxygenase (jasmonate pathway), a 3-hydroxy-3-methylglutaryl coenzyme A reductase (mevalonate pathway), a P450 protein (terpene biosynthesis

HALOE Science Investigation

NASA Technical Reports Server (NTRS)

Benner, D. Chris

1998-01-01

This cooperative agreement has investigated a number of spectroscopic problems of interest to the Halogen Occultation Experiment (HALOE). The types of studies performed are in two parts, namely, those that involve the testing and characterization of correlation spectrometers and those that provide basic molecular spectroscopic information. In addition, some solar studies were performed with the calibration data returned by HALOE from orbit. In order to accomplish this a software package was written as part of this cooperative agreement. The HALOE spectroscopic instrument package was used in various tests of the HALOE flight instrument. These included the spectral response test, the early stages of the gas response test and various spectral response tests of the detectors and optical elements of the instruments. Considerable effort was also expended upon the proper laboratory setup for many of the prelaunch tests of the HALOE flight instrument, including the spectral response test and the gas response test. These tests provided the calibration and the assurance that the calibration was performed correctly.

RNAi as an emerging approach to control Fusarium head blight disease and mycotoxin contamination in cereals

PubMed Central

Machado, Ana Karla; Brown, Neil A; Urban, Martin; Kanyuka, Kostya

2017-01-01

Abstract Fusarium graminearum is a major fungal pathogen of cereals worldwide, causing seedling, stem base and floral diseases, including Fusarium head blight (FHB). In addition to yield and quality losses, FHB contaminates cereal grain with mycotoxins, including deoxynivalenol, which are harmful to human, animal and ecosystem health. Currently, FHB control is only partially effective due to several intractable problems. RNA interference (RNAi) is a natural mechanism that regulates gene expression. RNAi has been exploited in the development of new genomic tools that allow the targeted silencing of genes of interest in many eukaryotes. Host‐induced gene silencing (HIGS) is a transgenic technology used to silence fungal genes in planta during attempted infection and thereby reduces disease levels. HIGS relies on the host plant's ability to produce mobile small interfering RNA molecules, generated from long double‐stranded RNA, which are complementary to targeted fungal genes. These molecules are transferred from the plant to invading fungi via an uncharacterised mechanism, to cause gene silencing. Here, we describe recent advances in RNAi‐mediated control of plant pathogenic fungi, highlighting the key advantages and disadvantages. We then discuss the developments and implications of combining HIGS with other methods of disease control. © 2017 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. PMID:28967180

Statistical Aspects of X-Class Halo and Non-Halo Events, 1996-2014

NASA Technical Reports Server (NTRS)

Wilson, Robert M.

2016-01-01

Of the 166 X-class events that occurred during the interval 1996-2014, 80 had associations with halo events, 68 had no associations with halo events, and 18 occurred during LASCO (Large Angle and Spectrometric COronagraph) data gaps. Both the duration and location of the X-class halo events proved to be statistically important parameters with respect to the geo-effectiveness of the events. Forty-four of the 80 X-class halo events occurred within 45 degrees of the Sun's central meridian and 47 of the 80 had duration greater than or equal to 30 minutes, whereas only 28 of the 68 X-class non-halo events occurred within 45 degrees of the Sun's central meridian (2 events have unknown location) and 22 of the 68 had duration greater than or equal to 30 minutes. Ignoring the 4 largest X-class flares greater than or equal to X4.0 during the LASCO data gaps, 17 of the remaining 20 were associated with halo events, and 14 of the 17 had at least one geo-magnetically disturbed day (Ap (i.e. NOAA's Ap* (ApStar)index: the major magnetic storms going back to 1932) greater than or equal to 25 nanotesias) within 1-5 days following the X-class halo event. Based on the hourly Dst (Disturbance storm time) index, the most geo-effective X-class halo event during the interval 1996-2014 was that of an X1.7 flare that occurred on 2001 March 29 at 0957, having an hourly Disturbance storm time minimum equal to minus 387 nanotesias. On average, the X-class halo events (80 events) were found to have a mean duration (42 minutes) slightly longer than the mean duration (29 minutes) of the X-class non-halo events (68 events) with the difference in the means being statistically important at the 1 percent level of significance.

Developing hazelnuts (Corylus spp.) with durable resistance to eastern filbert blight caused by Anisogramma anomala

Treesearch

Thomas J. Molnar; John Capik; Clayton W. Leadbetter; Ning Zhang; Guohong Cai; Bradley I. Hillman

2012-01-01

Eastern filbert blight (EFB) is a devastating fungal disease of European hazelnut, Corylus avellana L., and is considered to be the primary reason hazelnuts have not been developed as a commercial crop in the eastern United States. The pathogen, Anisogramma anomala, is native to a wide area east of the Rocky Mountains, where it...

The durable wheat disease resistance gene Lr34 confers common rust and northern corn leaf blight resistance in maize.

PubMed

Sucher, Justine; Boni, Rainer; Yang, Ping; Rogowsky, Peter; Büchner, Heike; Kastner, Christine; Kumlehn, Jochen; Krattinger, Simon G; Keller, Beat

2017-04-01

Maize (corn) is one of the most widely grown cereal crops globally. Fungal diseases of maize cause significant economic damage by reducing maize yields and by increasing input costs for disease management. The most sustainable control of maize diseases is through the release and planting of maize cultivars with durable disease resistance. The wheat gene Lr34 provides durable and partial field resistance against multiple fungal diseases of wheat, including three wheat rust pathogens and wheat powdery mildew. Because of its unique qualities, Lr34 became a cornerstone in many wheat disease resistance programmes. The Lr34 resistance is encoded by a rare variant of an ATP-binding cassette (ABC) transporter that evolved after wheat domestication. An Lr34-like disease resistance phenotype has not been reported in other cereal species, including maize. Here, we transformed the Lr34 resistance gene into the maize hybrid Hi-II. Lr34-expressing maize plants showed increased resistance against the biotrophic fungal disease common rust and the hemi-biotrophic disease northern corn leaf blight. Furthermore, the Lr34-expressing maize plants developed a late leaf tip necrosis phenotype, without negative impact on plant growth. With this and previous reports, it could be shown that Lr34 is effective against various biotrophic and hemi-biotrophic diseases that collectively parasitize all major cereal crop species. © 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

The fire blight pathogen Erwinia amylovora requires the rpoN gene for pathogenicity in apple.

PubMed

Ramos, Laura S; Lehman, Brian L; Sinn, Judith P; Pfeufer, Emily E; Halbrendt, Noemi O; McNellis, Timothy W

2013-10-01

RpoN is a σ(54) factor regulating essential virulence gene expression in several plant pathogenic bacteria, including Pseudomonas syringae and Pectobacterium carotovorum. In this study, we found that mutation of rpoN in the fire blight pathogen Erwinia amylovora caused a nonpathogenic phenotype. The E. amylovora rpoN Tn5 transposon mutant rpoN1250::Tn5 did not cause fire blight disease symptoms on shoots of mature apple trees. In detached immature apple fruits, the rpoN1250::Tn5 mutant failed to cause fire blight disease symptoms and grew to population levels 12 orders of magnitude lower than the wild-type. In addition, the rpoN1250::Tn5 mutant failed to elicit a hypersensitive response when infiltrated into nonhost tobacco plant leaves, and rpoN1250::Tn5 cells failed to express HrpN protein when grown in hrp (hypersensitive response and pathogenicity)-inducing liquid medium. A plasmid-borne copy of the wild-type rpoN gene complemented all the rpoN1250::Tn5 mutant phenotypes tested. The rpoN1250::Tn5 mutant was prototrophic on minimal solid and liquid media, indicating that the rpoN1250::Tn5 nonpathogenic phenotype was not caused by a defect in basic metabolism or growth. This study provides clear genetic evidence that rpoN is an essential virulence gene of E. amylovora, suggesting that rpoN has the same function in E. amylovora as in P. syringae and Pe. carotovorum. 2013 BSPP and JOHN WILEY & SONS LTD

HaloTag Technology: A Versatile Platform for Biomedical Applications

PubMed Central

2015-01-01

Exploration of protein function and interaction is critical for discovering links among genomics, proteomics, and disease state; yet, the immense complexity of proteomics found in biological systems currently limits our investigational capacity. Although affinity and autofluorescent tags are widely employed for protein analysis, these methods have been met with limited success because they lack specificity and require multiple fusion tags and genetic constructs. As an alternative approach, the innovative HaloTag protein fusion platform allows protein function and interaction to be comprehensively analyzed using a single genetic construct with multiple capabilities. This is accomplished using a simplified process, in which a variable HaloTag ligand binds rapidly to the HaloTag protein (usually linked to the protein of interest) with high affinity and specificity. In this review, we examine all current applications of the HaloTag technology platform for biomedical applications, such as the study of protein isolation and purification, protein function, protein–protein and protein–DNA interactions, biological assays, in vitro cellular imaging, and in vivo molecular imaging. In addition, novel uses of the HaloTag platform are briefly discussed along with potential future applications. PMID:25974629

Improvement of a dry formulation of Pseudomonas fluorescens EPS62e for fire blight disease biocontrol by combination of culture osmoadaptation with a freeze-drying lyoprotectant.

PubMed

Cabrefiga, J; Francés, J; Montesinos, E; Bonaterra, A

2014-10-01

To study the effect of lyoprotectants and osmoadaptation on viability of Pseudomonas fluorescens EPS62e during freeze-drying and storage and to evaluate the formulation in terms of efficacy in biocontrol and fitness on pear flowers. A wettable powder formulation of a biocontrol agent of fire blight was optimized by means of lyoprotectants and culture osmoadaptation. Freeze-drying was used to obtain dehydrated cells, and the best viability (70% of survival) was obtained using lactose as lyoprotectant. Survival during lyophilization was additionally improved using physiological adaptation of cells during cultivation under salt-amended medium (osmoadaptation). The procedure increased the survival of cells after freeze-drying attaining viability values close to a 100% in the lactose-formulated product (3 × 10(11) CFU g(-1) ), and through the storage period of 1 year at 4°C. The dry formulation showed also an improved biocontrol efficacy and survival of EPS62e on pear flowers under low relative humidity conditions. Cell viability after freeze-drying was improved using lactose as lyoprotectant combined with a procedure of osmoadaptation during cultivation. The powder-formulated product remained active for 12 months and retained biocontrol levels similar to that of fresh cells. The formulation showed an improved survival of EPS62e on flowers and an increase of the efficacy of biocontrol of fire blight at low relative humidity. The results have a potential value for commercial application in biocontrol agents not only of fire blight but also of other plant diseases. © 2014 The Society for Applied Microbiology.

Conjunctively screening of biocontrol agents (BCAs) against fusarium root rot and fusarium head blight caused by Fusarium graminearum.

PubMed

Wang, Lu-Yao; Xie, Yue-Shen; Cui, Yuan-Yu; Xu, Jianjun; He, Wei; Chen, Huai-Gu; Guo, Jian-Hua

2015-08-01

Fusarium root-rot and fusarium head blight are plant diseases caused by Fusarium sp. in different growth periods of wheat, bring heavy losses to crop production in China. This research is aiming to screen biocontrol agents conjunctively for controlling these two diseases at the same time, as well as evaluate our previous BCAs (Biological Control Agents) screening strategies in more complex situation, considering biocontrol is well concerned as an environmental-friendly plant disease controlling method. Totally 966 bacterial isolates were screened from different parts of wheat tissues, of which potential biocontrol values were detected according to their abilities in antagonism inhibition and secreting extracellular hydrolytic enzyme. Biocontrol tests against fusarium root rot and fusarium head blight were carried out on 37 bacterial isolates with potential biocontrol capacity after pre-selection through ARDRA- and BOX-PCR analysis on strains with high assessment points. We acquired 10 BCAs with obvious biocontrol efficacy (more than 40%) in greenhouse and field tests. Pseudomonas fluorescens LY1-8 performed well in both two tests (biocontrol efficacy: 44.62% and 58.31%), respectively. Overall, correlation coefficient is 0.720 between assessment values of 37 tested BCA strains and their biocontrol efficacy in trails against fusarium root rot; correlation coefficient is 0.806 between their assessment values and biocontrol efficacy in trails against fusarium head blight. We acquired 10 well-performed potential BCAs, especially P. fluorescens LY1-8 displayed good biocontrol capacity against two different diseases on wheat. Biocontrol efficacies results in both greenhouse and field tests showed high positive correlation with assessment values (0.720 and 0.806), suggesting that the BCAs screening and assessing strategy previously developed in our lab is also adaptable for conjunctively screening BCAs for controlling both root and shoot diseases on wheat caused by same

Cosmic web type dependence of halo clustering

NASA Astrophysics Data System (ADS)

Fisher, J. D.; Faltenbacher, A.

2018-01-01

We use the Millennium Simulation to show that halo clustering varies significantly with cosmic web type. Haloes are classified as node, filament, sheet and void haloes based on the eigenvalue decomposition of the velocity shear tensor. The velocity field is sampled by the peculiar velocities of a fixed number of neighbouring haloes, and spatial derivatives are computed using a kernel borrowed from smoothed particle hydrodynamics. The classification scheme is used to examine the clustering of haloes as a function of web type for haloes with masses larger than 1011 h- 1 M⊙. We find that node haloes show positive bias, filament haloes show negligible bias and void and sheet haloes are antibiased independent of halo mass. Our findings suggest that the mass dependence of halo clustering is rooted in the composition of web types as a function of halo mass. The substantial fraction of node-type haloes for halo masses ≳ 2 × 1013 h- 1 M⊙ leads to positive bias. Filament-type haloes prevail at intermediate masses, 1012-1013 h- 1 M⊙, resulting in unbiased clustering. The large contribution of sheet-type haloes at low halo masses ≲ 1012 h- 1 M⊙ generates antibiasing.

Regional differences in the composition of Fusarium head blight pathogens and mycotoxins associated with wheat in Mexico

USDA-ARS?s Scientific Manuscript database

Fusarium Head Blight (FHB) is a destructive disease of small grain cereals and a major food safety concern. Epidemics result in substantial yield losses, reduction in crop quality, and contamination of grains with trichothecenes and other mycotoxins. A number of different fusaria can cause FHB, and ...

"Invisible" Galactic Halos.

ERIC Educational Resources Information Center

Lugt, Karel Vander

1993-01-01

Develops a simple core-halo model of a galaxy that exhibits the main features of observed rotation curves and quantitatively illustrates the need to postulate halos of dark matter. Uses only elementary mechanics. (Author/MVL)

Needle blight of ponderosa pine.

Treesearch

T.W. Childs

1955-01-01

This progress report describes the appearance and behavior of needle blight of pondersoa pine as it has been observed in central and eastern Oregon since 1945. Sorts and extent of damage are briefly discussed, results to date are presented from continuing studies, and timber marking and improvement practices are recommended for infected stands.

Post-flowering moisture increased Fusarium head blight and deoxynivalenol levels in North Carolina field experiment with winter wheat

USDA-ARS?s Scientific Manuscript database

Current models to forecast Fusarium head blight (FHB) and deoxynivalenol (DON) levels in wheat are based on weather near anthesis, and breeding for resistance to Fusarium often relies on irrigation before and shortly after anthesis to encourage disease development. The effects of post-anthesis envi...

A simple culture method inducing sexual reproduction by Fusarium graminearum, the primary causal agent of Fusarium head blight

USDA-ARS?s Scientific Manuscript database

The homothallic ascomycete fungus Fusarium graminearum is the primary causal agent of Fusarium head blight (FHB), a devastating disease of wheat and barley worldwide. The fungus undergoes both asexual and sexual stages in its life cycle. The asexual stage produces conidiospores, whereas the sexual s...

Efficacy of bacillus biocontrol agents for management of sheath blight and narrow brown leaf spot in organic rice

USDA-ARS?s Scientific Manuscript database

Organic rice production has significantly increased in the U. S. over the last decade. Growers lack effective tools to manage sheath blight, caused by Rhizoctonia solani, and narrow brown leaf spot (NBLS), caused by Cercospora janseana, two major diseases affecting organic rice production. An experi...

Transgenic expression of lactoferrin imparts enhanced resistance to head blight of wheat caused by Fusarium graminearum.

PubMed

Han, Jigang; Lakshman, Dilip K; Galvez, Leny C; Mitra, Sharmila; Baenziger, Peter Stephen; Mitra, Amitava

2012-03-09

The development of plant gene transfer systems has allowed for the introgression of alien genes into plant genomes for novel disease control strategies, thus providing a mechanism for broadening the genetic resources available to plant breeders. Using the tools of plant genetic engineering, a broad-spectrum antimicrobial gene was tested for resistance against head blight caused by Fusarium graminearum Schwabe, a devastating disease of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) that reduces both grain yield and quality. A construct containing a bovine lactoferrin cDNA was used to transform wheat using an Agrobacterium-mediated DNA transfer system to express this antimicrobial protein in transgenic wheat. Transformants were analyzed by Northern and Western blots to determine lactoferrin gene expression levels and were inoculated with the head blight disease fungus F. graminearum. Transgenic wheat showed a significant reduction of disease incidence caused by F. graminearum compared to control wheat plants. The level of resistance in the highly susceptible wheat cultivar Bobwhite was significantly higher in transgenic plants compared to control Bobwhite and two untransformed commercial wheat cultivars, susceptible Wheaton and tolerant ND 2710. Quantification of the expressed lactoferrin protein by ELISA in transgenic wheat indicated a positive correlation between the lactoferrin gene expression levels and the levels of disease resistance. Introgression of the lactoferrin gene into elite commercial wheat, barley and other susceptible cereals may enhance resistance to F. graminearum.

Hot Gas Halos in Galaxies

NASA Astrophysics Data System (ADS)

Mulchaey, John

Most galaxy formation models predict that massive low-redshift disk galaxies are embedded in extended hot halos of externally accreted gas. Such gas appears necessary to maintain ongoing star formation in isolated spirals like the Milky Way. To explain the large population of red galaxies in rich groups and clusters, most galaxy evolution models assume that these hot gas halos are stripped completely when a galaxy enters a denser environment. This simple model has been remarkably successful at reproducing many observed properties of galaxies. Although theoretical arguments suggest hot gas halos are an important component in galaxies, we know very little about this gas from an observational standpoint. In fact, previous observations have failed to detect soft X-ray emission from such halos in disk galaxies. Furthermore, the assumption that hot gas halos are stripped completely when a galaxy enters a group or cluster has not been verified. We propose to combine proprietary and archival XMM-Newton observations of galaxies in the field, groups and clusters to study how hot gas halos are impacted by environment. Our proposed program has three components: 1) The deepest search to date for a hot gas halo in a quiescent spiral galaxy. A detection will confirm a basic tenet of disk galaxy formation models, whereas a non-detection will seriously challenge these models and impose new constraints on the growth mode and feedback history of disk galaxies. 2) A detailed study of the hot gas halos properties of field early-type galaxies. As environmental processes such as stripping are not expected to be important in the field, a study of hot gas halos in this environment will allow us to better understand how feedback and other internal processes impact hot gas halos. 3) A study of hot gas halos in the outskirts of groups and clusters. By comparing observations with our suite of simulations we can begin to understand what role the stripping of hot gas halos plays in galaxy

Crop connectivity under climate change: future environmental and geographic risks of potato late blight in Scotland.

PubMed

Skelsey, Peter; Cooke, David E L; Lynott, James S; Lees, Alison K

2016-11-01

The impact of climate change on dispersal processes is largely ignored in risk assessments for crop diseases, as inoculum is generally assumed to be ubiquitous and nonlimiting. We suggest that consideration of the impact of climate change on the connectivity of crops for inoculum transmission may provide additional explanatory and predictive power in disease risk assessments, leading to improved recommendations for agricultural adaptation to climate change. In this study, a crop-growth model was combined with aerobiological models and a newly developed infection risk model to provide a framework for quantifying the impact of future climates on the risk of disease occurrence and spread. The integrated model uses standard meteorological variables and can be easily adapted to various crop pathosystems characterized by airborne inoculum. In a case study, the framework was used with data defining the spatial distribution of potato crops in Scotland and spatially coherent, probabilistic climate change data to project the future connectivity of crop distributions for Phytophthora infestans (causal agent of potato late blight) inoculum and the subsequent risk of infection. Projections and control recommendations are provided for multiple combinations of potato cultivar and CO 2 emissions scenario, and temporal and spatial averaging schemes. Overall, we found that relative to current climatic conditions, the risk of late blight will increase in Scotland during the first half of the potato growing season and decrease during the second half. To guide adaptation strategies, we also investigated the potential impact of climate change-driven shifts in the cropping season. Advancing the start of the potato growing season by 1 month proved to be an effective strategy from both an agronomic and late blight management perspective. © 2016 John Wiley & Sons Ltd.

Application of image analysis in studies of quantitative disease resistance, exemplified using common bacterial blight-common bean pathosystem.

PubMed

Xie, Weilong; Yu, Kangfu; Pauls, K Peter; Navabi, Alireza

2012-04-01

The effectiveness of image analysis (IA) compared with an ordinal visual scale, for quantitative measurement of disease severity, its application in quantitative genetic studies, and its effect on the estimates of genetic parameters were investigated. Studies were performed using eight backcross-derived families of common bean (Phaseolus vulgaris) (n = 172) segregating for the molecular marker SU91, known to be associated with a quantitative trait locus (QTL) for resistance to common bacterial blight (CBB), caused by Xanthomonas campestris pv. phaseoli and X. fuscans subsp. fuscans. Even though both IA and visual assessments were highly repeatable, IA was more sensitive in detecting quantitative differences between bean genotypes. The CBB phenotypic difference between the two SU91 genotypic groups was consistently more than fivefold for IA assessments but generally only two- to threefold for visual assessments. Results suggest that the visual assessment results in overestimation of the effect of QTL in genetic studies. This may have been caused by lack of additivity and uneven intervals of the visual scale. Although visual assessment of disease severity is a useful tool for general selection in breeding programs, assessments using IA may be more suitable for phenotypic evaluations in quantitative genetic studies involving CBB resistance as well as other foliar diseases.

Spatial clustering of dark matter haloes: secondary bias, neighbour bias, and the influence of massive neighbours on halo properties

NASA Astrophysics Data System (ADS)

Salcedo, Andrés N.; Maller, Ariyeh H.; Berlind, Andreas A.; Sinha, Manodeep; McBride, Cameron K.; Behroozi, Peter S.; Wechsler, Risa H.; Weinberg, David H.

2018-04-01

We explore the phenomenon commonly known as halo assembly bias, whereby dark matter haloes of the same mass are found to be more or less clustered when a second halo property is considered, for haloes in the mass range 3.7 × 1011-5.0 × 1013 h-1 M⊙. Using the Large Suite of Dark Matter Simulations (LasDamas) we consider nine commonly used halo properties and find that a clustering bias exists if haloes are binned by mass or by any other halo property. This secondary bias implies that no single halo property encompasses all the spatial clustering information of the halo population. The mean values of some halo properties depend on their halo's distance to a more massive neighbour. Halo samples selected by having high values of one of these properties therefore inherit a neighbour bias such that they are much more likely to be close to a much more massive neighbour. This neighbour bias largely accounts for the secondary bias seen in haloes binned by mass and split by concentration or age. However, haloes binned by other mass-like properties still show a secondary bias even when the neighbour bias is removed. The secondary bias of haloes selected by their spin behaves differently than that for other halo properties, suggesting that the origin of the spin bias is different than of other secondary biases.

Efficacy of epiphytic bacteria to prevent northern leaf blight caused by Exserohilum turcicum in maize.

PubMed

Sartori, Melina; Nesci, Andrea; García, Julián; Passone, María A; Montemarani, Analía; Etcheverry, Miriam

Eight potential biological control agents (BCAs) were evaluated in planta in order to assess their effectiveness in reducing disease severity of northern leaf blight caused by Exserohilum turcicum. The assay was carried out in greenhouse. Twenty-six-day-old plants, V4 phenological stage, were inoculated with antagonists by foliar spray. Only one biocontrol agent was used per treatment. Ten days after this procedure, all treatments were inoculated with E. turcicum by foliar application. Treatments performed were: C-Et: control of E. turcicum; T1: isolate 1 (Enterococcus genus)+E. turcicum; T2: isolate 2 (Corynebacterium genus)+E. turcicum; T3: isolate 3 (Pantoea genus)+E. turcicum; T4: isolate 4 (Corynebacterium genus)+E. turcicum; T5: isolate 5 (Pantoea genus)+E. turcicum; T6: isolate 6 (Bacillus genus)+E. turcicum; T7: isolate 7 (Bacillus genus)+E. turcicum; T8: isolate 8 (Bacillus genus)+E. turcicum. Monitoring of antagonists on the phyllosphere was performed at different times. Furthermore, the percentage of infected leaves and, plant and leaf incidence were determined. Foliar application of different bacteria significantly reduced the leaf blight between 30-78% and 39-56% at 20 and 39 days respectively. It was observed that in the V10 stage of maize plants, isolate 8 (Bacillus spp.) caused the greatest effect on reducing the severity of northern leaf blight. Moreover, isolate 8 was the potential BCA that showed more stability in the phyllosphere. At 39 days, all potential biocontrol agents had a significant effect on controlling the disease caused by E. turcicum. Copyright © 2016 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

Revealing the Cosmic Web-dependent Halo Bias

NASA Astrophysics Data System (ADS)

Yang, Xiaohu; Zhang, Youcai; Lu, Tianhuan; Wang, Huiyuan; Shi, Feng; Tweed, Dylan; Li, Shijie; Luo, Wentao; Lu, Yi; Yang, Lei

2017-10-01

Halo bias is the one of the key ingredients of the halo models. It was shown at a given redshift to be only dependent, to the first order, on the halo mass. In this study, four types of cosmic web environments—clusters, filaments, sheets, and voids—are defined within a state-of-the-art high-resolution N-body simulation. Within these environments, we use both halo-dark matter cross correlation and halo-halo autocorrelation functions to probe the clustering properties of halos. The nature of the halo bias differs strongly between the four different cosmic web environments described here. With respect to the overall population, halos in clusters have significantly lower biases in the {10}11.0˜ {10}13.5 {h}-1 {M}⊙ mass range. In other environments, however, halos show extremely enhanced biases up to a factor 10 in voids for halos of mass ˜ {10}12.0 {h}-1 {M}⊙ . Such a strong cosmic web environment dependence in the halo bias may play an important role in future cosmological and galaxy formation studies. Within this cosmic web framework, the age dependency of halo bias is found to be only significant in clusters and filaments for relatively small halos ≲ {10}12.5 {h}-1 {M}⊙ .

Niclosamide inhibits leaf blight caused by Xanthomonas oryzae in rice

PubMed Central

Kim, Sung-Il; Song, Jong Tae; Jeong, Jin-Yong; Seo, Hak Soo

2016-01-01

Rice leaf blight, which is caused by the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo), results in huge losses in grain yield. Here, we show that Xoo-induced rice leaf blight is effectively controlled by niclosamide, an oral antihelminthic drug and molluscicide, which also functions as an anti-tumor agent. Niclosamide directly inhibited the growth of the three Xoo strains PXO99, 10208 and K3a. Niclosamide moved long distances from the site of local application to distant rice tissues. Niclosamide also increased the levels of salicylate and induced the expression of defense-related genes such as OsPR1 and OsWRKY45, which suppressed Xoo-induced leaf wilting. Niclosamide had no detrimental effects on vegetative/reproductive growth and yield. These combined results indicate that niclosamide can be used to block bacterial leaf blight in rice with no negative side effects. PMID:26879887

Promoter variants of Xa23 alleles affect bacterial blight resistance and evolutionary pattern

PubMed Central

Xu, Feifei; Tang, Yongchao; Gao, Ying

2017-01-01

Bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo), is the most important bacterial disease in rice (Oryza sativa L.). Our previous studies have revealed that the bacterial blight resistance gene Xa23 from wild rice O. rufipogon Griff. confers the broadest-spectrum resistance against all the naturally occurring Xoo races. As a novel executor R gene, Xa23 is transcriptionally activated by the bacterial avirulence (Avr) protein AvrXa23 via binding to a 28-bp DNA element (EBEAvrXa23) in the promoter region. So far, the evolutionary mechanism of Xa23 remains to be illustrated. Here, a rice germplasm collection of 97 accessions, including 29 rice cultivars (indica and japonica) and 68 wild relatives, was used to analyze the evolution, phylogeographic relationship and association of Xa23 alleles with bacterial blight resistance. All the ~ 473 bp DNA fragments consisting of promoter and coding regions of Xa23 alleles in the germplasm accessions were PCR-amplified and sequenced, and nine single nucleotide polymorphisms (SNPs) were detected in the promoter regions (~131 bp sequence upstream from the start codon ATG) of Xa23/xa23 alleles while only two SNPs were found in the coding regions. The SNPs in the promoter regions formed 5 haplotypes (Pro-A, B, C, D, E) which showed no significant difference in geographic distribution among these 97 rice accessions. However, haplotype association analysis indicated that Pro-A is the most favored haplotype for bacterial blight resistance. Moreover, SNP changes among the 5 haplotypes mostly located in the EBE/ebe regions (EBEAvrXa23 and corresponding ebes located in promoters of xa23 alleles), confirming that the EBE region is the key factor to confer bacterial blight resistance by altering gene expression. Polymorphism analysis and neutral test implied that Xa23 had undergone a bottleneck effect, and selection process of Xa23 was not detected in cultivated rice. In addition, the Xa23 coding region was found highly

Promoter variants of Xa23 alleles affect bacterial blight resistance and evolutionary pattern.

PubMed

Cui, Hua; Wang, Chunlian; Qin, Tengfei; Xu, Feifei; Tang, Yongchao; Gao, Ying; Zhao, Kaijun

2017-01-01

Bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo), is the most important bacterial disease in rice (Oryza sativa L.). Our previous studies have revealed that the bacterial blight resistance gene Xa23 from wild rice O. rufipogon Griff. confers the broadest-spectrum resistance against all the naturally occurring Xoo races. As a novel executor R gene, Xa23 is transcriptionally activated by the bacterial avirulence (Avr) protein AvrXa23 via binding to a 28-bp DNA element (EBEAvrXa23) in the promoter region. So far, the evolutionary mechanism of Xa23 remains to be illustrated. Here, a rice germplasm collection of 97 accessions, including 29 rice cultivars (indica and japonica) and 68 wild relatives, was used to analyze the evolution, phylogeographic relationship and association of Xa23 alleles with bacterial blight resistance. All the ~ 473 bp DNA fragments consisting of promoter and coding regions of Xa23 alleles in the germplasm accessions were PCR-amplified and sequenced, and nine single nucleotide polymorphisms (SNPs) were detected in the promoter regions (~131 bp sequence upstream from the start codon ATG) of Xa23/xa23 alleles while only two SNPs were found in the coding regions. The SNPs in the promoter regions formed 5 haplotypes (Pro-A, B, C, D, E) which showed no significant difference in geographic distribution among these 97 rice accessions. However, haplotype association analysis indicated that Pro-A is the most favored haplotype for bacterial blight resistance. Moreover, SNP changes among the 5 haplotypes mostly located in the EBE/ebe regions (EBEAvrXa23 and corresponding ebes located in promoters of xa23 alleles), confirming that the EBE region is the key factor to confer bacterial blight resistance by altering gene expression. Polymorphism analysis and neutral test implied that Xa23 had undergone a bottleneck effect, and selection process of Xa23 was not detected in cultivated rice. In addition, the Xa23 coding region was found highly

Spatial clustering of dark matter haloes: secondary bias, neighbour bias, and the influence of massive neighbours on halo properties

DOE PAGES

Salcedo, Andres N.; Maller, Ariyeh H.; Berlind, Andreas A.; ...

2018-01-15

Here, we explore the phenomenon commonly known as halo assembly bias, whereby dark matter haloes of the same mass are found to be more or less clustered when a second halo property is considered, for haloes in the mass range 3.7 × 10 11–5.0 × 10 13 h –1 M ⊙. Using the Large Suite of Dark Matter Simulations (LasDamas) we consider nine commonly used halo properties and find that a clustering bias exists if haloes are binned by mass or by any other halo property. This secondary bias implies that no single halo property encompasses all the spatial clusteringmore » information of the halo population. The mean values of some halo properties depend on their halo's distance to a more massive neighbour. Halo samples selected by having high values of one of these properties therefore inherit a neighbour bias such that they are much more likely to be close to a much more massive neighbour. This neighbour bias largely accounts for the secondary bias seen in haloes binned by mass and split by concentration or age. However, haloes binned by other mass-like properties still show a secondary bias even when the neighbour bias is removed. The secondary bias of haloes selected by their spin behaves differently than that for other halo properties, suggesting that the origin of the spin bias is different than of other secondary biases.« less

Spatial clustering of dark matter haloes: secondary bias, neighbour bias, and the influence of massive neighbours on halo properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Salcedo, Andres N.; Maller, Ariyeh H.; Berlind, Andreas A.

Here, we explore the phenomenon commonly known as halo assembly bias, whereby dark matter haloes of the same mass are found to be more or less clustered when a second halo property is considered, for haloes in the mass range 3.7 × 10 11–5.0 × 10 13 h –1 M ⊙. Using the Large Suite of Dark Matter Simulations (LasDamas) we consider nine commonly used halo properties and find that a clustering bias exists if haloes are binned by mass or by any other halo property. This secondary bias implies that no single halo property encompasses all the spatial clusteringmore » information of the halo population. The mean values of some halo properties depend on their halo's distance to a more massive neighbour. Halo samples selected by having high values of one of these properties therefore inherit a neighbour bias such that they are much more likely to be close to a much more massive neighbour. This neighbour bias largely accounts for the secondary bias seen in haloes binned by mass and split by concentration or age. However, haloes binned by other mass-like properties still show a secondary bias even when the neighbour bias is removed. The secondary bias of haloes selected by their spin behaves differently than that for other halo properties, suggesting that the origin of the spin bias is different than of other secondary biases.« less

Changing Pattern of Crop Fraction in Late Blight Induced Potato Crops in Potato Bowl of West Bengal by using Multi-temporal Time Series AWiFs Data

NASA Astrophysics Data System (ADS)

Chakrabarty, Abhisek

2016-07-01

Crop fraction is the ratio of crop occupying a unit area in ground pixel, is very important for monitoring crop growth. One of the most important variables in crop growth monitoring is the fraction of available solar radiation intercepted by foliage. Late blight of potato (Solanum tuberosum), caused by the oomycete pathogen Phytophthora infestans, is considered to be the most destructive crop diseases of potato worldwide. Under favourable climatic conditions, and without intervention (i.e. fungicide sprays), the disease can destroy potato crop within few weeks. Therefore it is important to evaluate the crop fraction for monitoring the healthy and late blight affected potato crops. This study was conducted in potato bowl of West Bengal, which consists of districts of Hooghly, Howrah, Burdwan, Bankuara, and Paschim Medinipur. In this study different crop fraction estimation method like linear spectral un-mixing, Normalized difference vegetation index (NDVI) based DPM model (Zhang et al. 2013), Ratio vegetation index based DPM model, improved Pixel Dichotomy Model (Li et al. 2014) ware evaluated using multi-temporal IRS AWiFs data in two successive potato growing season of 2012-13 and 2013-14 over the study area and compared with measured crop fraction. The comparative study based on measured healthy and late blight affected potato crop fraction showed that improved Pixel Dichotomy Model maintain the high coefficient of determination (R2= 0.835) with low root mean square error (RMSE=0.21) whereas the correlation values of NDVI based DPM model and RVI based DPM model is 0.763 and 0.694 respectively. The changing pattern of crop fraction profile of late blight affected potato crop was studied in respect of healthy potato crop fraction which was extracted from the 269 GPS points of potato field. It showed that the healthy potato crop fraction profile maintained the normal phenological trend whereas the late blight affected potato crop fraction profile suddenly fallen

Sun-Earth L1 Region Halo-To-Halo Orbit and Halo-To-LisaJous Orbit Transfers

NASA Technical Reports Server (NTRS)

Roberts, Craig E.; DeFazio, Robert

2004-01-01

Practical techniques for designing transfer trajectories between Libration Point Orbits (LPOs) are presented. Motivation for development of these techniques was provided by a hardware contingency experienced by the Solar Heliospheric Observatory (SOHO), a joint mission of the European Space Agency (ESA) and the National Aeronautics and Space Administration (NASA) orbiting the L1 point of the Sun-Earth system. A potential solution to the problem involved a transfer from SOHO s periodic halo orbit to a new LPO of substantially different dimensions. Assuming the SOHO halo orbit as the departure orbit, several practical LPO transfer techniques were developed to obtain new Lissajous or periodic halo orbits that satisfy mission requirements and constraints. While not implemented for the SOHO mission, practical LPO transfer techniques were devised that are generally applicable to current and future LPO missions.

A similar local immune and oxidative stress phenotype in vitiligo and halo nevus.

PubMed

Yang, Yuqi; Li, Shuli; Zhu, Guannan; Zhang, Qian; Wang, Gang; Gao, Tianwen; Li, Chunying; Wang, Lin; Jian, Zhe

2017-07-01

Vitiligo and halo nevus are two common T-cell-mediated skin disorders. Although autoimmunity has been suggested to be involved in both diseases, the relationship between vitiligo and halo nevus is not fully understood. The aim of the current study was to investigate whether vitiligo and halo nevus share the same immunological and oxidative stress response. Infiltrations of T cells, and expressions of chemokine receptors (CXCR3, CCR4, CCR5) and cytotoxic markers (Granzyme B, Perforin) in the lesions of vitiligo and halo nevus were examined by immunohistochemistry. Enzyme-linked immunosorbent assay was performed to analyze the expressions of chemokines in the serum samples and cytotoxic markers secreted by CD8 + T cells which were sorted from the peripheral blood mononuclear cells in healthy donors, vitiligo and halo nevus patients. Tissue levels of chemokine receptors and CXCR3 ligands in healthy controls, vitiligo patients and halo nevus patients were determined by qRT-PCR analysis. The percentages of CXCR3 + CD4 + T and CXCR3 + CD8 + T cells from the peripheral blood samples were examined by flow cytometry. Tissue and serum hydrogen peroxide (H 2 O 2 ) concentrations were measured using H 2 O 2 assay kit. Immunohistochemistry revealed a significant T-cell response, with pronounced dermal infiltrates of CD8 + T cells in vitiligo and halo nevus. The inflammatory cytotoxic markers such as Granzyme B and Perforin were also elevated in vitiligo and halo nevus, suggesting inflammatory responses in situ. By qRT-PCR and ELISA assay, we found significantly increased expressions of the chemokine receptor CXCR3 and its ligands, especially the accumulated CXCL10 in the skin lesions of vitiligo and halo nevus. Moreover, the level of H 2 O 2 , a key player involved in regulation of the immune response was significantly upregulated in the skin lesions of vitiligo and halo nevus. In addition, the increased H 2 O 2 concentration correlated positively with CXCL10 level in skin

Genome-wide association mapping of fusarium head blight resistance in wheat (Triticum aestivum L.) using genotyping by sequencing

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB) is one of the most important wheat diseases worldwide and host resistance displays complex genetic control. A genome-wide association study (GWAS) was performed on 273 winter wheat breeding lines from the mid-western and eastern regions of the US to identify chromosomal re...

Potential of osmoadaptation for improving Pantoea agglomerans E325 as biocontrol agent for fire blight of apple and pear

USDA-ARS?s Scientific Manuscript database

Pantoea agglomerans biocontrol strain E325 is the active ingredient in a commercial product for fire blight, a destructive disease of apple and pear initiated by Erwinia amylovora in flowers. Osmoadaptation, involving the combination of saline osmotic stress and osmolyte amendment to growth media, w...

Thymol-based sub-micron emulsions exhibit antifungal activity against Fusarium graminearum and inhibit Fusarium head blight (FHB) in wheat

USDA-ARS?s Scientific Manuscript database

Fusarium graminearum is a very destructive fungal pathogen that leads to Fusarium head blight (FHB) in wheat, a disease that costs growers millions of dollars annually both in crop losses and control measures. Current countermeasures include the deployment of wheat varieties with some resistance to ...

Population genetic structure and mycotoxin potential of the wheat crown rot and head blight pathogen Fusarium culmorum in Algeria

USDA-ARS?s Scientific Manuscript database

Surveys for crown rot (FCR) and head blight (FHB) of Algerian wheat conducted during 2014 and 2015 revealed that Fusarium culmorum strains producing 3-acetyl-deoxynivalenol (3ADON) or nivalenol (NIV) were the primary causal agents of these important diseases. Morphological identification of the isol...

The Dual Origin Of Stellar Halos

NASA Astrophysics Data System (ADS)

Zolotov, Adi

In the dominant Lambda+Cold Dark Matter cosmological paradigm, galaxy stellar halos are thought to form hierarchically from multiple accretion events, starting from the first structures to collapse in the Universe. This dissertation aims to make the first detailed theoretical predictions for the origin of galactic stellar halos. We focus on understanding the physical processes involved in halo formation using high-resolution, N-body + Smooth Particle Hydrodynamic simulations of disk galaxies in a cosmological context. These self-consistent simulations are used to study the competing importance of dissipative processes and dissipationless mergers in the formation of stellar halos. The relative contribution of each mechanism, and its specific role in assembling the inner and outer regions of halos is explored, as a function of galaxy mass and merging history. We show that the presence of both accreted and in situ stars in halos is a generic feature of galaxy formation. For L* galaxies, the relative contribution of each stellar population to a halo is shown to be a function of a galaxy's accretion history. Galaxies with recent mergers, like M31, will host relatively few in situ stars, while galaxies with more quiescent recent histories, like the Milky Way, will likely have a larger relative contribution from an in situ population. We show that in situ halo stars are more [alpha/Fe]-rich than accreted stars at the high [Fe/H] end of a halo's metallicity distribution function. In lower mass galaxies, M ˜ 1010 M, in situ stars dominate the stellarmass of halos. In these galaxies, in situ halo stars are, on average, younger and more metal-rich than accreted halo stars. Because in situ stars are dominant, these trends result in halos that are more metal-rich than simple accretion models predict. The halos of low mass galaxies do not extend out to the virial radii of the primary, as they do in more massive galaxies. We find that the ratio of luminous-halo mass to total

Medfly Ceratitis capitata as Potential Vector for Fire Blight Pathogen Erwinia amylovora: Survival and Transmission.

PubMed

Ordax, Mónica; Piquer-Salcedo, Jaime E; Santander, Ricardo D; Sabater-Muñoz, Beatriz; Biosca, Elena G; López, María M; Marco-Noales, Ester

2015-01-01

Monitoring the ability of bacterial plant pathogens to survive in insects is required for elucidating unknown aspects of their epidemiology and for designing appropriate control strategies. Erwinia amylovora is a plant pathogenic bacterium that causes fire blight, a devastating disease in apple and pear commercial orchards. Studies on fire blight spread by insects have mainly focused on pollinating agents, such as honeybees. However, the Mediterranean fruit fly (medfly) Ceratitis capitata (Diptera: Tephritidae), one of the most damaging fruit pests worldwide, is also common in pome fruit orchards. The main objective of the study was to investigate whether E. amylovora can survive and be transmitted by the medfly. Our experimental results show: i) E. amylovora can survive for at least 8 days inside the digestive tract of the medfly and until 28 days on its external surface, and ii) medflies are able to transmit the bacteria from inoculated apples to both detached shoots and pear plants, being the pathogen recovered from lesions in both cases. This is the first report on E. amylovora internalization and survival in/on C. capitata, as well as the experimental transmission of the fire blight pathogen by this insect. Our results suggest that medfly can act as a potential vector for E. amylovora, and expand our knowledge on the possible role of these and other insects in its life cycle.

Medfly Ceratitis capitata as Potential Vector for Fire Blight Pathogen Erwinia amylovora: Survival and Transmission

PubMed Central

Ordax, Mónica; Piquer-Salcedo, Jaime E.; Santander, Ricardo D.; Sabater-Muñoz, Beatriz; Biosca, Elena G.; López, María M.; Marco-Noales, Ester

2015-01-01

Monitoring the ability of bacterial plant pathogens to survive in insects is required for elucidating unknown aspects of their epidemiology and for designing appropriate control strategies. Erwinia amylovora is a plant pathogenic bacterium that causes fire blight, a devastating disease in apple and pear commercial orchards. Studies on fire blight spread by insects have mainly focused on pollinating agents, such as honeybees. However, the Mediterranean fruit fly (medfly) Ceratitis capitata (Diptera: Tephritidae), one of the most damaging fruit pests worldwide, is also common in pome fruit orchards. The main objective of the study was to investigate whether E. amylovora can survive and be transmitted by the medfly. Our experimental results show: i) E. amylovora can survive for at least 8 days inside the digestive tract of the medfly and until 28 days on its external surface, and ii) medflies are able to transmit the bacteria from inoculated apples to both detached shoots and pear plants, being the pathogen recovered from lesions in both cases. This is the first report on E. amylovora internalization and survival in/on C. capitata, as well as the experimental transmission of the fire blight pathogen by this insect. Our results suggest that medfly can act as a potential vector for E. amylovora, and expand our knowledge on the possible role of these and other insects in its life cycle. PMID:25978369

Control of fire blight (Erwinia amylovora) on apple trees with trunk-injected plant resistance inducers and antibiotics and assessment of induction of pathogenesis-related protein genes

PubMed Central

Aćimović, Srđan G.; Zeng, Quan; McGhee, Gayle C.; Sundin, George W.; Wise, John C.

2015-01-01

Management of fire blight is complicated by limitations on use of antibiotics in agriculture, antibiotic resistance development, and limited efficacy of alternative control agents. Even though successful in control, preventive antibiotic sprays also affect non-target bacteria, aiding the selection for resistance which could ultimately be transferred to the pathogen Erwinia amylovora. Trunk injection is a target-precise pesticide delivery method that utilizes tree xylem to distribute injected compounds. Trunk injection could decrease antibiotic usage in the open environment and increase the effectiveness of compounds in fire blight control. In field experiments, after 1–2 apple tree injections of either streptomycin, potassium phosphites (PH), or acibenzolar-S-methyl (ASM), significant reduction of blossom and shoot blight symptoms was observed compared to water injected control trees. Overall disease suppression with streptomycin was lower than typically observed following spray applications to flowers. Trunk injection of oxytetracycline resulted in excellent control of shoot blight severity, suggesting that injection is a superior delivery method for this antibiotic. Injection of both ASM and PH resulted in the significant induction of PR-1, PR-2, and PR-8 protein genes in apple leaves indicating induction of systemic acquired resistance (SAR) under field conditions. The time separating SAR induction and fire blight symptom suppression indicated that various defensive compounds within the SAR response were synthesized and accumulated in the canopy. ASM and PH suppressed fire blight even after cessation of induced gene expression. With the development of injectable formulations and optimization of doses and injection schedules, the injection of protective compounds could serve as an effective option for fire blight control. PMID:25717330

Efficacy of fungicide combinations, phosphoric acid, and plant extract from stinging nettle on potato late blight management and tuber yield

USDA-ARS?s Scientific Manuscript database

Late blight, caused by Phytophthora infestans is a major constraint to potato production. Inadequate management of the disease has often resulted in heavy losses in various production regions. We assessed the efficacy of fungicides, phosphoric acid, and stinging nettle plant extract combinations for...

A rapid lateral-flow immunoassay for phytosanitary detection of Erwinia amylovora and on-site fire blight diagnosis.

PubMed

Braun-Kiewnick, A; Altenbach, D; Oberhänsli, T; Bitterlin, W; Duffy, B

2011-10-01

Fire blight is an invasive disease caused by Erwinia amylovora that threatens pome fruit production globally. Effective implementation of phytosanitary control measures depends upon rapid, reliable pathogen detection and disease diagnosis. We developed a lateral-flow immunoassay specific for E. amylovora with a detection limit of log 5.7 CFU/ml, typical of pathogen concentrations in symptomatic plant material. The simple assay had comparable sensitivity to standard culture plating, serum agglutination and nested PCR when validated for application in a phytosanitary laboratory as a confirmatory test of cultured isolates and for first-line diagnosis of phytosanitary samples that represent the full range of commercial, ornamental and forestry host species. On-site validation in ring-trials with local plant inspectors demonstrated robust and reliable detection (compared to subsequent plating and PCR analysis). The simplicity, inspector acceptance and facilitation of expedited diagnosis (from 2 days for laboratory submitted samples to 15 min with the immunoassay), offers a valuable tool for improved phytosanitary control of fire blight. Copyright © 2011 Elsevier B.V. All rights reserved.

Evaluation of major ancestors of North American soybean cultivars for resistance to Pythium species that cause seedling blight

USDA-ARS?s Scientific Manuscript database

Pythium seedling blight, which is caused by a number of oomycete Pythium species, is a disease that affects soybeans (Glycine max (L.) Merrill) grown in the United States and Canada. Pythium ultimum var. ultimum, one of the most common species, is favored by cool, wet conditions that are most likely...

Silencing of six susceptibility genes results in potato late blight resistance.

PubMed

Sun, Kaile; Wolters, Anne-Marie A; Vossen, Jack H; Rouwet, Maarten E; Loonen, Annelies E H M; Jacobsen, Evert; Visser, Richard G F; Bai, Yuling

2016-10-01

Phytophthora infestans, the causal agent of late blight, is a major threat to commercial potato production worldwide. Significant costs are required for crop protection to secure yield. Many dominant genes for resistance (R-genes) to potato late blight have been identified, and some of these R-genes have been applied in potato breeding. However, the P. infestans population rapidly accumulates new virulent strains that render R-genes ineffective. Here we introduce a new class of resistance which is based on the loss-of-function of a susceptibility gene (S-gene) encoding a product exploited by pathogens during infection and colonization. Impaired S-genes primarily result in recessive resistance traits in contrast to recognition-based resistance that is governed by dominant R-genes. In Arabidopsis thaliana, many S-genes have been detected in screens of mutant populations. In the present study, we selected 11 A. thaliana S-genes and silenced orthologous genes in the potato cultivar Desiree, which is highly susceptible to late blight. The silencing of five genes resulted in complete resistance to the P. infestans isolate Pic99189, and the silencing of a sixth S-gene resulted in reduced susceptibility. The application of S-genes to potato breeding for resistance to late blight is further discussed.

Urban Blight Remediation as a Cost-Beneficial Solution to Firearm Violence.

PubMed

Branas, Charles C; Kondo, Michelle C; Murphy, Sean M; South, Eugenia C; Polsky, Daniel; MacDonald, John M

2016-12-01

To determine if blight remediation of abandoned buildings and vacant lots can be a cost-beneficial solution to firearm violence in US cities. We performed quasi-experimental analyses of the impacts and economic returns on investment of urban blight remediation programs involving 5112 abandoned buildings and vacant lots on the occurrence of firearm and nonfirearm violence in Philadelphia, Pennsylvania, from 1999 to 2013. We adjusted before-after percent changes and returns on investment in treated versus control groups for sociodemographic factors. Abandoned building remediation significantly reduced firearm violence -39% (95% confidence interval [CI] = -28%, -50%; P < .05) as did vacant lot remediation (-4.6%; 95% CI = -4.2%, -5.0%; P < .001). Neither program significantly affected nonfirearm violence. Respectively, taxpayer and societal returns on investment for the prevention of firearm violence were $5 and $79 for every dollar spent on abandoned building remediation and $26 and $333 for every dollar spent on vacant lot remediation. Abandoned buildings and vacant lots are blighted structures seen daily by urban residents that may create physical opportunities for violence by sheltering illegal activity and illegal firearms. Urban blight remediation programs can be cost-beneficial strategies that significantly and sustainably reduce firearm violence.

Urban Blight Remediation as a Cost-Beneficial Solution to Firearm Violence

PubMed Central

Kondo, Michelle C.; Murphy, Sean M.; South, Eugenia C.; Polsky, Daniel; MacDonald, John M.

2016-01-01

Objectives. To determine if blight remediation of abandoned buildings and vacant lots can be a cost-beneficial solution to firearm violence in US cities. Methods. We performed quasi-experimental analyses of the impacts and economic returns on investment of urban blight remediation programs involving 5112 abandoned buildings and vacant lots on the occurrence of firearm and nonfirearm violence in Philadelphia, Pennsylvania, from 1999 to 2013. We adjusted before–after percent changes and returns on investment in treated versus control groups for sociodemographic factors. Results. Abandoned building remediation significantly reduced firearm violence −39% (95% confidence interval [CI] = −28%, −50%; P < .05) as did vacant lot remediation (−4.6%; 95% CI = −4.2%, −5.0%; P < .001). Neither program significantly affected nonfirearm violence. Respectively, taxpayer and societal returns on investment for the prevention of firearm violence were $5 and $79 for every dollar spent on abandoned building remediation and $26 and $333 for every dollar spent on vacant lot remediation. Conclusions. Abandoned buildings and vacant lots are blighted structures seen daily by urban residents that may create physical opportunities for violence by sheltering illegal activity and illegal firearms. Urban blight remediation programs can be cost-beneficial strategies that significantly and sustainably reduce firearm violence. PMID:27736217

First report of a new leaf blight caused by Phacidiopycnis washingtonensis on Pacific Madrone in Western Washington and Oregon

USDA-ARS?s Scientific Manuscript database

In recent years, an unknown leaf blight disease, consisting of browned, desiccated leaves occurring mainly in the lower parts of the canopy, has been observed during periods of wet springs on Pacific madrone (Arbutus menziesii) in western Washington and Oregon. In May 2009 and 2011 severe outbreaks ...

Identification of Teosinte (Zea mays ssp. parviglumis) alleles for resistance to southern leaf blight in near isogenic maize lines

USDA-ARS?s Scientific Manuscript database

Southern Leaf Blight [(SLB), causal agent Cochliobolus heterostrophus race O] is an important fungal disease of maize in the United States. Teosinte (Zea mays ssp. parviglumis), the wild progenitor of maize, offers a novel source of resistance alleles that may have been lost during domestication. T...

Transgenic expression of lactoferrin imparts enhanced resistance to head blight of wheat caused by Fusarium graminearum

PubMed Central

2012-01-01

Background The development of plant gene transfer systems has allowed for the introgression of alien genes into plant genomes for novel disease control strategies, thus providing a mechanism for broadening the genetic resources available to plant breeders. Using the tools of plant genetic engineering, a broad-spectrum antimicrobial gene was tested for resistance against head blight caused by Fusarium graminearum Schwabe, a devastating disease of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) that reduces both grain yield and quality. Results A construct containing a bovine lactoferrin cDNA was used to transform wheat using an Agrobacterium-mediated DNA transfer system to express this antimicrobial protein in transgenic wheat. Transformants were analyzed by Northern and Western blots to determine lactoferrin gene expression levels and were inoculated with the head blight disease fungus F. graminearum. Transgenic wheat showed a significant reduction of disease incidence caused by F. graminearum compared to control wheat plants. The level of resistance in the highly susceptible wheat cultivar Bobwhite was significantly higher in transgenic plants compared to control Bobwhite and two untransformed commercial wheat cultivars, susceptible Wheaton and tolerant ND 2710. Quantification of the expressed lactoferrin protein by ELISA in transgenic wheat indicated a positive correlation between the lactoferrin gene expression levels and the levels of disease resistance. Conclusions Introgression of the lactoferrin gene into elite commercial wheat, barley and other susceptible cereals may enhance resistance to F. graminearum. PMID:22405032

Utilizing Bacillus to inhibit the growth and infection by sheath blight pathogen, Rhizoctoniasolani in rice

NASA Astrophysics Data System (ADS)

Margani, R.; Hadiwiyono; Widadi, S.

2018-03-01

Rhizoctonia solani Kuhn is a common pathogen of rice. The pathogen causes sheath blight of rice. The pathogen can cause loss in the production of rice up to 45%. So far, the disease however is still poorly taken care of by the farmers and researchers, so the control measures is nearly never practiced by the farmers in the fields. It due to the unavailability of effective control method of the disease. Therefore, development to control the disease is important. Bacillus is one of popular bacteria which is effective as biological control agent of a lot of pathogens in plants, but it has not been used for control sheath blight in rice yet. The current researches were aimed to study the potential of Bacillus collected from healthy rice as candidates of biological control agent of the disease. The results showed that some isolates showed indications to inhibit significantly the growth and infection of the pathogen. We obtained at least five isolates of Bacillus collected from leaves, sheath, and stem of healthy rice fields. All of the isolates could effectively inhibit the growth of R. solani in vitro on potato dextrose medium at range 30.33-58.00%, whereas in vivo B05 isolate was the most effective in inhibiting the infection of pathogen at 30.43%. It was not significantly different (P≥0.05) to application of hexaconazol with dosage of 2 ml L-1.

The halo current in ASDEX Upgrade

NASA Astrophysics Data System (ADS)

Pautasso, G.; Giannone, L.; Gruber, O.; Herrmann, A.; Maraschek, M.; Schuhbeck, K. H.; ASDEX Upgrade Team

2011-04-01

Due to the complexity of the phenomena involved, a self-consistent physical model for the prediction of the halo current is not available. Therefore the ITER specifications of the spatial distribution and evolution of the halo current rely on empirical assumptions. This paper presents the results of an extensive analysis of the halo current measured in ASDEX Upgrade with particular emphasis on the evolution of the halo region, on the magnitude and time history of the halo current, and on the structure and duration of its toroidal and poloidal asymmetries. The effective length of the poloidal path of the halo current in the vessel is found to be rather insensitive to plasma parameters. Large values of the toroidally averaged halo current are observed in both vertical displacement events and centred disruptions but last a small fraction of the current quench; they coincide typically with a large but short-lived MHD event.

Simulating Halos with the Caterpillar Project

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2016-04-01

The Caterpillar Project is a beautiful series of high-resolution cosmological simulations. The goal of this project is to examine the evolution of dark-matter halos like the Milky Ways, to learn about how galaxies like ours formed. This immense computational project is still in progress, but the Caterpillar team is already providing a look at some of its first results.Lessons from Dark-Matter HalosWhy simulate the dark-matter halos of galaxies? Observationally, the formation history of our galaxy is encoded in galactic fossil record clues, like the tidal debris from disrupted satellite galaxies in the outer reaches of our galaxy, or chemical abundance patterns throughout our galactic disk and stellar halo.But to interpret this information in a way that lets us learn about our galaxys history, we need to first test galaxy formation and evolution scenarios via cosmological simulations. Then we can compare the end result of these simulations to what we observe today.This figure illustrates the difference that mass resolution makes. In the left panel, the mass resolution is 1.5*10^7 solar masses per particle. In the right panel, the mass resolution is 3*10^4 solar masses per particle [Griffen et al. 2016]A Computational ChallengeDue to how computationally expensive such simulations are, previous N-body simulations of the growth of Milky-Way-like halos have consisted of only one or a few halos each. But in order to establish a statistical understanding of how galaxy halos form and find out whether the Milky Ways halo is typical or unusual! it is necessary to simulate a larger number of halos.In addition, in order to accurately follow the formation and evolution of substructure within the dark-matter halos, these simulations must be able to resolve the smallest dwarf galaxies, which are around a million solar masses. This requires an extremely high mass resolution, which adds to the computational expense of the simulation.First OutcomesThese are the challenges faced by

Dependence of Halo Bias and Kinematics on Assembly Variables

NASA Astrophysics Data System (ADS)

Xu, Xiaoju; Zheng, Zheng

2018-06-01

Using dark matter haloes identified in a large N-body simulation, we study halo assembly bias, with halo formation time, peak maximum circular velocity, concentration, and spin as the assembly variables. Instead of grouping haloes at fixed mass into different percentiles of each assembly variable, we present the joint dependence of halo bias on the values of halo mass and each assembly variable. In the plane of halo mass and one assembly variable, the joint dependence can be largely described as halo bias increasing outward from a global minimum. We find it unlikely to have a combination of halo variables to absorb all assembly bias effects. We then present the joint dependence of halo bias on two assembly variables at fixed halo mass. The gradient of halo bias does not necessarily follow the correlation direction of the two assembly variables and it varies with halo mass. Therefore in general for two correlated assembly variables one cannot be used as a proxy for the other in predicting halo assembly bias trend. Finally, halo assembly is found to affect the kinematics of haloes. Low-mass haloes formed earlier can have much higher pairwise velocity dispersion than those of massive haloes. In general, halo assembly leads to a correlation between halo bias and halo pairwise velocity distribution, with more strongly clustered haloes having higher pairwise velocity and velocity dispersion. However, the correlation is not tight, and the kinematics of haloes at fixed halo bias still depends on halo mass and assembly variables.

Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus ‘Robusta 5’ accessions

PubMed Central

2012-01-01

Background Breeding of fire blight resistant scions and rootstocks is a goal of several international apple breeding programs, as options are limited for management of this destructive disease caused by the bacterial pathogen Erwinia amylovora. A broad, large-effect quantitative trait locus (QTL) for fire blight resistance has been reported on linkage group 3 of Malus ‘Robusta 5’. In this study we identified markers derived from putative fire blight resistance genes associated with the QTL by integrating further genetic mapping studies with bioinformatics analysis of transcript profiling data and genome sequence databases. Results When several defined E.amylovora strains were used to inoculate three progenies from international breeding programs, all with ‘Robusta 5’ as a common parent, two distinct QTLs were detected on linkage group 3, where only one had previously been mapped. In the New Zealand ‘Malling 9’ X ‘Robusta 5’ population inoculated with E. amylovora ICMP11176, the proximal QTL co-located with SNP markers derived from a leucine-rich repeat, receptor-like protein ( MxdRLP1) and a closely linked class 3 peroxidase gene. While the QTL detected in the German ‘Idared’ X ‘Robusta 5’ population inoculated with E. amylovora strains Ea222_JKI or ICMP11176 was approximately 6 cM distal to this, directly below a SNP marker derived from a heat shock 90 family protein gene ( HSP90). In the US ‘Otawa3’ X ‘Robusta5’ population inoculated with E. amylovora strains Ea273 or E2002a, the position of the LOD score peak on linkage group 3 was dependent upon the pathogen strains used for inoculation. One of the five MxdRLP1 alleles identified in fire blight resistant and susceptible cultivars was genetically associated with resistance and used to develop a high resolution melting PCR marker. A resistance QTL detected on linkage group 7 of the US population co-located with another HSP90 gene-family member and a WRKY transcription factor

Bio-protective microbial agents from rhizosphere eco-systems trigger plant defense responses provide protection against sheath blight disease in rice (Oryza sativa L.).

PubMed

Singh, Udai B; Malviya, Deepti; Wasiullah; Singh, Shailendra; Pradhan, Jatindra K; Singh, Bhanu P; Roy, Manish; Imram, Mohd; Pathak, Neelam; Baisyal, B M; Rai, Jai P; Sarma, B K; Singh, Rajiv K; Sharma, P K; Kaur, Saman Deep; Manna, M C; Sharma, Sushil K; Sharma, Arun K

2016-11-01

Sheath blight of rice (Oryza sativa L.) caused by Rhizoctonia solani is a major disease and attempts are being made to develop microbe based technologies for biocontrol of this pathogen. However, the mechanisms of biocontrol are not fully understood and still require indepth study in the backdrop of emerging concepts in biological systems. The present investigation was aimed at deciphering the mechanisms of biocontrol of sheath blight of rice employing Pseudomonas fluorescens and Trichoderma harzianum as model agents for biocontrol. Initially 25, 5 and 5 strains of P. fluorescens, T. viride and T. harzianum, respectively, were screened for their biocontrol potential. Out of which, six strains with higher value of percent inhibition of fungal mycelium in dual plate assay were selected. The role of P. fluorescens, T. viride and T. harzianum were investigated in induction and bioaccumulation of natural antioxidants, defence-related biomolecules and other changes in plant which lead not only to growth promotion but also protection from pathogenic stress conditions in rice. The two most promising strains, P. fluorescens PF-08 and T. harzianum UBSTH-501 selected on the basis of in planta evaluation, when applied individually or in combination, significantly enhanced the accumulation of defence-related biomolecules, enzymes and exhibited biocontrol potential against R. solani. A modified/newly developed delivery system was applied for the first time in the experiments involving inoculation of plants with both bioagents, viz. P. fluorescens PF-08 and T. harzianum UBSTH-501. Results suggested that application of P. fluorescens PF-08 and T. harzianum UBSTH-501 alone or in combination, not only helps in control of the disease but also increases plant growth along with reduction in application of toxic chemical pesticides. Copyright © 2016 Elsevier GmbH. All rights reserved.

Novel species of Botryosphaeriaceae associated with shoot blight of pistachio.

PubMed

Chen, ShuaiFei; Li, GuoQing; Liu, FeiFei; Michailides, Themis J

2015-01-01

Various species of phytopathogenic Botryosphaeriaceae were identified previously from pistachio trees worldwide. Disease symptoms caused by pathogens in Botryosphaeriaceae on pistachio include panicle and shoot blight, leaf defoliation, fruit discoloration and decay. In this study species of Botryosphaeriaceae were collected from blighted pistachio shoots in Arizona, USA, and Greece. The aims of this study were to identify these Botryosphaeriaceae isolates and to test their pathogenicity to pistachio. The fungi were identified based on comparisons of DNA sequence data of the nuclear rDNA internal transcribed spacer region (ITS), a partial translation elongation factor 1-alpha gene (TEF1), a partial β-tubulin gene (TUB2) and morphological characteristics. Results indicated that some isolates collected from pistachio represent two previously undescribed species, which we described here as Lasiodiplodia americana sp. nov. from the United States and Neofusicoccum hellenicum sp. nov. from Greece. Field inoculations of L. americana and N. hellenicum on branches of four pistachio cultivars showed that both L. americana and N. hellenicum are pathogenic on pistachio. The four pistachio cultivars differed in their susceptibility to the Botryosphaeriaceae species. Results of this study suggested that the two new species of Botryosphaeriaceae need to be monitored carefully to determine the distribution of these pathogens and the possible spread to other areas. © 2015 by The Mycological Society of America.

SPHERES HALO

NASA Image and Video Library

2017-06-23

iss052e006482 (6/23/2017) --- Astronaut Peggy Whitson is photographed during a test session of the Synchronized Position Hold, Engage, Reorient, Experimental Satellites (SPHERES) Halo investigation in the Kibo module. The SPHERES Halo investigation studies the possibility of launching several separate components and then attaching them once they are in space. The investigation upgrades the International Space Station’s fleet of SPHERES to enable each SPHERE to communicate with six external objects at the same time, testing new control and remote assembly methods.

Control of plant defense mechanisms and fire blight pathogenesis through the regulation of 6-thioguanine biosynthesis in Erwinia amylovora.

PubMed

Coyne, Sébastien; Litomska, Agnieszka; Chizzali, Cornelia; Khalil, Mohammed N A; Richter, Klaus; Beerhues, Ludger; Hertweck, Christian

2014-02-10

Fire blight is a devastating disease of Rosaceae plants, such as apple and pear trees. It is characterized by necrosis of plant tissue, caused by the phytopathogenic bacterium Erwinia amylovora. The plant pathogen produces the well-known antimetabolite 6-thioguanine (6TG), which plays a key role in fire blight pathogenesis. Here we report that YcfR, a member of the LTTR family, is a major regulator of 6TG biosynthesis in E. amylovora. Inactivation of the regulator gene (ycfR) led to dramatically decreased 6TG production. Infection assays with apple plants (Malus domestica cultivar Holsteiner Cox) and cell cultures of Sorbus aucuparia (mountain ash, rowan) revealed abortive fire blight pathogenesis and reduced plant response (biphenyl and dibenzofuran phytoalexin production). In the presence of the ΔycfR mutant, apple trees were capable of activating the abscission machinery to remove infected tissue. In addition to unveiling the regulation of 6TG biosynthesis in a major plant pathogen, we demonstrate for the first time that this antimetabolite plays a pivotal role in dysregulating the plant response to infection. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Field evaluation of leaf blight-resistant plant introductions of Brassica Juncea and Brassica Rapa and elucidation of inheritance of resistance

USDA-ARS?s Scientific Manuscript database

Brassica leafy greens (Brassica juncea and Brassica rapa) represent one of the most economically important vegetable crop groups in the southeastern United States. In the last 10 years, numerous occurrences of a leaf blight disease on these leafy vegetables have been reported in several states. One ...

The Anemic Stellar Halo of M101

NASA Astrophysics Data System (ADS)

Holwerda, Benne

2014-10-01

Models of galaxy formation in a cosmological context predict that massive disk galaxies should have richly-structured extended stellar halos, containing ~10% of a galaxy's stars, originating in large part from the tidal disruption of dwarf galaxies. Observations of a number of nearby disk galaxies have generally agreed with these expectations. Recent new observations in integrated light with a novel array of low scattered-light telephoto lenses have failed to convincingly detect a stellar halo in the nearby massive face-on disk galaxy M101 (van Dokkum et al. 2014). They argue that any halo has to have <0.3% of the mass of the galaxy. This halo would be the least massive of any massive disk galaxy in the local Universe (by factors of several) -- such a halo is not predicted or naturally interpreted by the models, and would present a critical challenge to the picture of ubiquitous stellar halos formed from the debris of disrupting dwarf galaxies.We propose to resolve the stellar populations of this uniquely anemic stellar halo for 6 orbits with HST (ACS and WFC3), allowing us to reach surface brightness limits sufficient to clearly detect and characterize M101's stellar halo if it carries more than 0.1% of M101's mass. With resolved stellar populations, we can use the gradient of stellar populations as a function of radius to separate stellar halo from disk, which is impossible using integrated light observations. The resolved stellar populations will reveal the halo mass to much greater accuracy, measure the halo radial profile, constrain any halo lopsidedness, estimate the halo's stellar metallicity, and permit an analysis of outer disk stellar populations.

Comparative analysis of proton- and neutron-halo breakups

NASA Astrophysics Data System (ADS)

Mukeru, B.

2018-06-01

A detailed analysis of the proton- and neutron-halo breakup cross sections is presented. Larger neutron-halo breakup cross sections than proton-halo breakup cross sections are obtained. This is found to be mainly due to the projectile structure, namely the ground state wave function and the dipole electric response function. It is also found that the continuum–continuum couplings are stronger in the proton-halo breakup than in the neutron-halo breakup. The increase of proton- and neutron-halo ground state separation energy slightly strengthens these couplings in the proton- and neutron-halo total and nuclear breakups, while they are weakened in the proton- and neutron-halo Coulomb breakups. The Coulomb-nuclear interference remains strongly destructive in both proton- and neutron-halo breakups and this is independent of the ground state separation energy. The results also show that the increase of the neutron-halo ground state separation energy decreases significantly the agreement between the proton- and neutron-halo breakup cross sections, both qualitatively and quantitatively. It is obtained that when the proton-halo ground state separation energy is increased by a factor of 4.380, the proton-halo breakup cross section is reduced by a factor of 4.392, indicating a clear proportionality. However, when the neutron-halo ground state separation energy is increased by the same factor, the neutron-halo total breakup cross section is reduced by a factor of 8.522.

Observing halos through airplane windows

NASA Astrophysics Data System (ADS)

Shaw, Joseph A.

2017-09-01

A halo is one of the most frequent and impressive optical phenomena easily observable in the sky. It is also one of the natural optical phenomena most often visible through an airplane window. Halos and related phenomena vary from a single spot of light formed by reflection of the sun from the tops of plate-shaped ice crystals to large rings with splashes of colors, caused by a combination of reflection and refraction in ice crystals. Even with extreme heat at the ground, an airplane quickly rises through sufficient altitude to find ice crystals in the clouds, enabling an alert passenger (or pilot) to see ice-crystal optical phenomena. This paper briefly reviews these phenomena with photographs and diagrams. Photographs include commonly seen halos, as well as Bottlinger's rings, a rare halo that is still not fully explained. Tips are given for enhancing your chances of seeing and understanding halos.

Halo-free Phase Contrast Microscopy

NASA Astrophysics Data System (ADS)

Nguyen, Tan H.; Kandel, Mikhail; Shakir, Haadi M.; Best-Popescu, Catherine; Arikkath, Jyothi; Do, Minh N.; Popescu, Gabriel

2017-03-01

We present a new approach for retrieving halo-free phase contrast microscopy (hfPC) images by upgrading the conventional PC microscope with an external interferometric module, which generates sufficient data for reversing the halo artifact. Acquiring four independent intensity images, our approach first measures haloed phase maps of the sample. We solve for the halo-free sample transmission function by using a physical model of the image formation under partial spatial coherence. Using this halo-free sample transmission, we can numerically generate artifact-free PC images. Furthermore, this transmission can be further used to obtain quantitative information about the sample, e.g., the thickness with known refractive indices, dry mass of live cells during their cycles. We tested our hfPC method on various control samples, e.g., beads, pillars and validated its potential for biological investigation by imaging live HeLa cells, red blood cells, and neurons.

Climate change impacts on the ecology of Fusarium graminearum species complex and susceptibility of wheat to Fusarium head blight: a review

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB) of wheat caused mainly by members of the Fusarium graminearum species complex (FGSC) is a major threat to agricultural grain production, food safety, and animal health. The severity of disease epidemics and accumulation of associated trichothecene mycotoxins in wheat kerne...

Auxin as a player in the biocontrol of Fusarium head blight disease of barley and its potential as a disease control agent.

PubMed

Petti, Carloalberto; Reiber, Kathrin; Ali, Shahin S; Berney, Margaret; Doohan, Fiona M

2012-11-22

Mechanisms involved in the biological control of plant diseases are varied and complex. Hormones, including the auxin indole acetic acid (IAA) and abscisic acid (ABA), are essential regulators of a multitude of biological functions, including plant responses to biotic and abiotic stressors. This study set out to determine what hormones might play a role in Pseudomonas fluorescens -mediated control of Fusarium head blight (FHB) disease of barley and to determine if biocontrol-associated hormones directly affect disease development. A previous study distinguished bacterium-responsive genes from bacterium-primed genes, distinguished by the fact that the latter are only up-regulated when both P. fluorescens and the pathogen Fusarium culmorum are present. In silico analysis of the promoter sequences available for a subset of the bacterium-primed genes identified several hormones, including IAA and ABA as potential regulators of transcription. Treatment with the bacterium or pathogen resulted in increased IAA and ABA levels in head tissue; both microbes had additive effects on the accumulation of IAA but not of ABA. The microbe-induced accumulation of ABA preceded that of IAA. Gene expression analysis showed that both hormones up-regulated the accumulation of bacterium-primed genes. But IAA, more than ABA up-regulated the transcription of the ABA biosynthesis gene NCED or the signalling gene Pi2, both of which were previously shown to be bacterium-responsive rather than primed. Application of IAA, but not of ABA reduced both disease severity and yield loss caused by F. culmorum, but neither hormone affect in vitro fungal growth. Both IAA and ABA are involved in the P. fluorescens-mediated control of FHB disease of barley. Gene expression studies also support the hypothesis that IAA plays a role in the primed response to F. culmorum. This hypothesis was validated by the fact that pre-application of IAA reduced both symptoms and yield loss asssociated with the disease

Auxin as a player in the biocontrol of Fusarium head blight disease of barley and its potential as a disease control agent

PubMed Central

2012-01-01

Background Mechanisms involved in the biological control of plant diseases are varied and complex. Hormones, including the auxin indole acetic acid (IAA) and abscisic acid (ABA), are essential regulators of a multitude of biological functions, including plant responses to biotic and abiotic stressors. This study set out to determine what hormones might play a role in Pseudomonas fluorescens –mediated control of Fusarium head blight (FHB) disease of barley and to determine if biocontrol-associated hormones directly affect disease development. Results A previous study distinguished bacterium-responsive genes from bacterium-primed genes, distinguished by the fact that the latter are only up-regulated when both P. fluorescens and the pathogen Fusarium culmorum are present. In silico analysis of the promoter sequences available for a subset of the bacterium-primed genes identified several hormones, including IAA and ABA as potential regulators of transcription. Treatment with the bacterium or pathogen resulted in increased IAA and ABA levels in head tissue; both microbes had additive effects on the accumulation of IAA but not of ABA. The microbe-induced accumulation of ABA preceded that of IAA. Gene expression analysis showed that both hormones up-regulated the accumulation of bacterium-primed genes. But IAA, more than ABA up-regulated the transcription of the ABA biosynthesis gene NCED or the signalling gene Pi2, both of which were previously shown to be bacterium-responsive rather than primed. Application of IAA, but not of ABA reduced both disease severity and yield loss caused by F. culmorum, but neither hormone affect in vitro fungal growth. Conclusions Both IAA and ABA are involved in the P. fluorescens-mediated control of FHB disease of barley. Gene expression studies also support the hypothesis that IAA plays a role in the primed response to F. culmorum. This hypothesis was validated by the fact that pre-application of IAA reduced both symptoms and yield loss

Halo modelling in chameleon theories

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lombriser, Lucas; Koyama, Kazuya; Li, Baojiu, E-mail: lucas.lombriser@port.ac.uk, E-mail: kazuya.koyama@port.ac.uk, E-mail: baojiu.li@durham.ac.uk

2014-03-01

We analyse modelling techniques for the large-scale structure formed in scalar-tensor theories of constant Brans-Dicke parameter which match the concordance model background expansion history and produce a chameleon suppression of the gravitational modification in high-density regions. Thereby, we use a mass and environment dependent chameleon spherical collapse model, the Sheth-Tormen halo mass function and linear halo bias, the Navarro-Frenk-White halo density profile, and the halo model. Furthermore, using the spherical collapse model, we extrapolate a chameleon mass-concentration scaling relation from a ΛCDM prescription calibrated to N-body simulations. We also provide constraints on the model parameters to ensure viability on localmore » scales. We test our description of the halo mass function and nonlinear matter power spectrum against the respective observables extracted from large-volume and high-resolution N-body simulations in the limiting case of f(R) gravity, corresponding to a vanishing Brans-Dicke parameter. We find good agreement between the two; the halo model provides a good qualitative description of the shape of the relative enhancement of the f(R) matter power spectrum with respect to ΛCDM caused by the extra attractive gravitational force but fails to recover the correct amplitude. Introducing an effective linear power spectrum in the computation of the two-halo term to account for an underestimation of the chameleon suppression at intermediate scales in our approach, we accurately reproduce the measurements from the N-body simulations.« less

Control of Rhizoctonia foliar blight in forest seedling nurseries: A 3-year study

Treesearch

Tom E. Starkey; Scott A. Enebak; Ken McQuage; Kevin Barfield

2013-01-01

Laboratory and field trials have shown Proline® (prothioconazole) to be efficacious against the causal agent of Rhizoctonia foliar blight on loblolly pine (Pinus taeda). A biweekly application of Proline ® at 5 fl oz/ac in nursery field tests significantly reduced Rhizoctonia foliar blight on loblolly pine when compared to applications of Abound ® azoxystrobin (24 fl...

Analytical halo model of galactic conformity

NASA Astrophysics Data System (ADS)

Pahwa, Isha; Paranjape, Aseem

2017-09-01

We present a fully analytical halo model of colour-dependent clustering that incorporates the effects of galactic conformity in a halo occupation distribution framework. The model, based on our previous numerical work, describes conformity through a correlation between the colour of a galaxy and the concentration of its parent halo, leading to a correlation between central and satellite galaxy colours at fixed halo mass. The strength of the correlation is set by a tunable 'group quenching efficiency', and the model can separately describe group-level correlations between galaxy colour (1-halo conformity) and large-scale correlations induced by assembly bias (2-halo conformity). We validate our analytical results using clustering measurements in mock galaxy catalogues, finding that the model is accurate at the 10-20 per cent level for a wide range of luminosities and length-scales. We apply the formalism to interpret the colour-dependent clustering of galaxies in the Sloan Digital Sky Survey (SDSS). We find good overall agreement between the data and a model that has 1-halo conformity at a level consistent with previous results based on an SDSS group catalogue, although the clustering data require satellites to be redder than suggested by the group catalogue. Within our modelling uncertainties, however, we do not find strong evidence of 2-halo conformity driven by assembly bias in SDSS clustering.

Historical halo displays as past weather indicator

NASA Astrophysics Data System (ADS)

Neuhäuser, Dagmar; Neuhäuser, Ralph

2017-04-01

Certain halo displays like the 22° circle were known to indicate specific weather pattern since millennia - as specified in Babylonian omina, Aristotle's Meteorology, farmers' weather lore, etc. Today, it is known that halo phenomena are due to refraction and reflection of sun and moon light in ice crystals in cirrus and cirrostratus, so that halo observations do indicate atmospheric conditions like temperature, humidity, pressure etc. in a few km height. The Astronomical Diaries of Babylonia have recorded both halo phenomena (circles, parhelia, etc.) and weather conditions (rain, clouds, etc.), so that we can use them to show statistically, whether, which and how fast halo phenomena are related to weather - for the last few centuries BC for Babylonia. We can then also compare the observations of Babylonian priests in the given BC epoch (without air and light pollution) with the last few decades of the modern epoch (with air and light pollution), where amateur halo observers have systematically recorded such phenomena (in Europe). Weather and climate are known to be partly driven by solar activity. Hence, one could also consider whether there is an indirect relation between halo displays as weather proxy and aurorae as solar activity proxy - if low solar activity leads to low pressure systems, one could expect more halos, preliminary studies show such a hint. For the last few decades, we have many halo observations, satellite imaging of the aurora oval, and many data on solar activity. A statistically sufficient amount of aurora and halo observations should be available for the historic time to investigate such a possible connection: halos were recorded very often in antiquity and the medieval times (as found in chronicles etc.), and modern scholarly catalogs of aurorae also often contain unrecognized halo displays.

Mapping four quantitative trait loci associated with type I Fusarium head blight resistance in winter wheat ‘INW0412’

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB) has become one of the most damaging wheat diseases in humid and semi-humid regions around the world. Breeding efforts have focused on resistance mechanisms that limit the spread once a spike is infected, or type II resistance. But resistance to initial infection, type I re...

Probing the shape and internal structure of dark matter haloes with the halo-shear-shear three-point correlation function

NASA Astrophysics Data System (ADS)

Shirasaki, Masato; Yoshida, Naoki

2018-04-01

Weak lensing three-point statistics are powerful probes of the structure of dark matter haloes. We propose to use the correlation of the positions of galaxies with the shapes of background galaxy pairs, known as the halo-shear-shear correlation (HSSC), to measure the mean halo ellipticity and the abundance of subhaloes in a statistical manner. We run high-resolution cosmological N-body simulations and use the outputs to measure the HSSC for galaxy haloes and cluster haloes. Non-spherical haloes cause a characteristic azimuthal variation of the HSSC, and massive subhaloes in the outer region near the virial radius contribute to ˜ 10 per cent of the HSSC amplitude. Using the HSSC and its covariance estimated from our N-body simulations, we make forecast for constraining the internal structure of dark matter haloes with future galaxy surveys. With 1000 galaxy groups with mass greater than 1013.5 h-1M⊙, the average halo ellipticity can be measured with an accuracy of 10 percent. A spherical, smooth mass distribution can be ruled out at a ˜5σ significance level. The existence of subhaloes whose masses are in 1-10 percent of the main halo mass can be detected with ˜104 galaxies/clusters. We conclude that the HSSC provides valuable information on the structure of dark haloes and hence on the nature of dark matter.

Suppression of bacterial blight on mustard greens with host plant resistance and Acibenzolar-S-Methyl

USDA-ARS?s Scientific Manuscript database

Bacterial blight, caused by Pseudomonas cannabina pv. alisalensis, attacks the leaves of most brassica vegetables, including mustard greens (Brassica juncea). ‘Carolina Broadleaf,’ a new mustard cultivar, is resistant to bacterial blight. Acibenzolar-S-methyl (trade name Actigard) has been used to m...

Brown-Spot Needle Blight of Pines

Treesearch

W.R. Phelps; A.G. Kais; T.H. Nicholls

1978-01-01

Brown-spot needle blight, caused by Scirrhia acicola (Dearn.) Siggers, delays growth and causes mortality of longleaf pine (Pinus palustris Mill.). Brown spot reduces total annual growth of southern pines by more than 16 million cubic feet (0.453 million cubic meters) of timber. Damage is most severe on longleaf seedlings in the grass stage; i.e., those that have not...

How do stars affect ψDM halos?

NASA Astrophysics Data System (ADS)

Chan, James H. H.; Schive, Hsi-Yu; Woo, Tak-Pong; Chiueh, Tzihong

2018-04-01

Wave dark matter (ψDM) predicts a compact soliton core and a granular halo in every galaxy. This work presents the first simulation study of an elliptical galaxy by including both stars and ψDM, focusing on the systematic changes of the central soliton and halo granules. With the addition of stars in the inner halo, we find the soliton core consistently becomes more prominent by absorbing mass from the host halo than that without stars, and the halo granules become "non-isothermal", "hotter" in the inner halo and "cooler" in the outer halo, as opposed to the isothermal halo in pure ψDM cosmological simulations. Moreover, the composite (star+ψDM) mass density is found to follow a r-2 isothermal profile near the half-light radius in most cases. Most striking is the velocity dispersion of halo stars that increases rapidly toward the galactic center by a factor of at least 2 inside the half-light radius caused by the deepened soliton gravitational potential, a result that compares favorably with observations of elliptical galaxies and bulges in spiral galaxies. However in some rare situations we find a phase segregation turning a compact distribution of stars into two distinct populations with high and very low velocity dispersions; while the high-velocity component mostly resides in the halo, the very low-velocity component is bound to the interior of the soliton core, resembling stars in faint dwarf spheroidal galaxies.

Lipid transfer proteins and protease inhibitors as key factors in the priming of barley responses to Fusarium head blight disease by a biocontrol strain of Pseudomonas fluorescens.

PubMed

Petti, Carloalberto; Khan, Mojibur; Doohan, Fiona

2010-11-01

Strains of non-pathogenic pseudomonad bacteria, can elicit host defence responses against pathogenic microorganisms. Pseudomonas fluorescens strain MKB158 can protect cereals from pathogenesis by Fusarium fungi, including Fusarium head blight which is an economically important disease due to its association with both yield loss and mycotoxin contamination of grain. Using the 22 K barley Affymetrix chip, trancriptome studies were undertaken to determine the local effect of P. fluorescens strain MKB158 on the transcriptome of barley head tissue, and to discriminate transcripts primed by the bacterium to respond to challenge by Fusarium culmorum, a causal agent of the economically important Fusarium head blight disease of cereals. The bacterium significantly affected the accumulation of 1203 transcripts and primed 74 to positively, and 14 to negatively, respond to the pathogen (P = 0.05). This is the first study to give insights into bacterium priming in the Triticeae tribe of grasses and associated transcripts were classified into 13 functional classes, associated with diverse functions, including detoxification, cell wall biosynthesis and the amplification of host defence responses. In silico analysis of Arabidopsis homologs of bacterium-primed barley genes indicated that, as is the case in dicots, jasmonic acid plays a role in pseudomonad priming of host responses. Additionally, the transcriptome studies described herein also reveal new insights into bacterium-mediated priming of host defences against necrotrophs, including the positive effects on grain filling, lignin deposition, oxidative stress responses, and the inhibition of protease inhibitors and proteins that play a key role in programmed cell death.

Charge radius of the 13N* proton halo nucleus with Halo Effective Field Theory

NASA Astrophysics Data System (ADS)

Mosavi Khansari, M.; Khalili, H.; Sadeghi, H.

2018-02-01

We evaluated the charge radius of the first excited state of 13N with halo Effective Field Theory (hEFT) at the low energies. The halo effective field theory without pion is used to examine the halo nucleus bound state with a large S-wave scattering length. We built Lagrangian from the effective core and the valence proton of the fields and obtained the charge form factor at Leading-Order (LO). The charge radius at leading order for the first excited state of the proton halo nucleus, 13N, has been estimated as rc = 2.52 fm. This result is without any finite-size contributions included from the core and the proton. If we consider the contributions of the charge radius of the proton and the core, the result will be [rC]13N* = 5.85 fm.

Outlook for blight-resistant American chestnut trees

Treesearch

Paul H. Sisco

2009-01-01

Culminating 20 years of breeding efforts, in spring 2008, The American Chestnut Foundation (TACF) delivered its first 500 chestnuts to the USDA Forest Service for testing on National Forest lands. The expectation is that these seedlings will be more resistant to chestnut blight (Cryphonectria parasitica) than are pure American chestnut trees (

Potential effects of diurnal temperature oscillations on potato late blight with special reference to climate change.

PubMed

Shakya, S K; Goss, E M; Dufault, N S; van Bruggen, A H C

2015-02-01

Global climate change will have effects on diurnal temperature oscillations as well as on average temperatures. Studies on potato late blight (Phytophthora infestans) development have not considered daily temperature oscillations. We hypothesize that growth and development rates of P. infestans would be less influenced by change in average temperature as the magnitude of fluctuations in daily temperatures increases. We investigated the effects of seven constant (10, 12, 15, 17, 20, 23, and 27°C) and diurnally oscillating (±5 and ±10°C) temperatures around the same means on number of lesions, incubation period, latent period, radial lesion growth rate, and sporulation intensity on detached potato leaves inoculated with two P. infestans isolates from clonal lineages US-8 and US-23. A four-parameter thermodynamic model was used to describe relationships between temperature and disease development measurements. Incubation and latency progression accelerated with increasing oscillations at low mean temperatures but slowed down with increasing oscillations at high mean temperatures (P < 0.005), as hypothesized. Infection efficiency, lesion growth rate, and sporulation increased under small temperature oscillations compared with constant temperatures but decreased when temperature oscillations were large. Thus, diurnal amplitude in temperature should be considered in models of potato late blight, particularly when predicting effects of global climate change on disease development.

ULTRAVIOLET HALOS AROUND SPIRAL GALAXIES. I. MORPHOLOGY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hodges-Kluck, Edmund; Cafmeyer, Julian; Bregman, Joel N., E-mail: hodgeskl@umich.edu

2016-12-10

We examine ultraviolet halos around a sample of highly inclined galaxies within 25 Mpc to measure their morphology and luminosity. Despite contamination from galactic light scattered into the wings of the point-spread function, we find that ultraviolet (UV) halos occur around each galaxy in our sample. Around most galaxies the halos form a thick, diffuse disk-like structure, but starburst galaxies with galactic superwinds have qualitatively different halos that are more extensive and have filamentary structure. The spatial coincidence of the UV halos above star-forming regions, the lack of consistent association with outflows or extraplanar ionized gas, and the strong correlationmore » between the halo and galaxy UV luminosity suggest that the UV light is an extragalactic reflection nebula. UV halos may thus represent 10{sup 6}–10{sup 7} M {sub ⊙} of dust within 2–10 kpc of the disk, whose properties may change with height in starburst galaxies.« less

THE DUAL ORIGIN OF STELLAR HALOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zolotov, Adi; Hogg, David W.; Willman, Beth

2009-09-10

We investigate the formation of the stellar halos of four simulated disk galaxies using high-resolution, cosmological SPH + N-body simulations. These simulations include a self-consistent treatment of all the major physical processes involved in galaxy formation. The simulated galaxies presented here each have a total mass of {approx}10{sup 12} M{sub sun}, but span a range of merger histories. These simulations allow us to study the competing importance of in situ star formation (stars formed in the primary galaxy) and accretion of stars from subhalos in the building of stellar halos in a {lambda}CDM universe. All four simulated galaxies are surroundedmore » by a stellar halo, whose inner regions (r < 20 kpc) contain both accreted stars, and an in situ stellar population. The outer regions of the galaxies' halos were assembled through pure accretion and disruption of satellites. Most of the in situ halo stars formed at high redshift out of smoothly accreted cold gas in the inner 1 kpc of the galaxies' potential wells, possibly as part of their primordial disks. These stars were displaced from their central locations into the halos through a succession of major mergers. We find that the two galaxies with recently quiescent merger histories have a higher fraction of in situ stars ({approx}20%-50%) in their inner halos than the two galaxies with many recent mergers ({approx}5%-10% in situ fraction). Observational studies concentrating on stellar populations in the inner halo of the Milky Way will be the most affected by the presence of in situ stars with halo kinematics, as we find that their existence in the inner few tens of kpc is a generic feature of galaxy formation.« less

Addressing the human and technical dimensions of potato IPM using farmer field schools (FFS): CIP and partners' experience on late blight management

USDA-ARS?s Scientific Manuscript database

Starting in the 1990’s, the International Potato Center (CIP)’s integrated pest management team for potato late blight (IPM-LB) realized the importance of addressing the management of this complex potato disease by combining crop protection and management sciences, with social and behavioral science...

Characteristic time for halo current growth and rotation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boozer, Allen H., E-mail: ahb17@columbia.edu

2015-10-15

A halo current flows for part of its path through the plasma edge and for part through the chamber walls and during tokamak disruptions can be as large as tenths of the plasma current. The primary interest in halo currents is the large force that they can exert on machine components particularly if the toriodal rotation of the halo current resonates with a natural oscillation frequency of the tokamak device. Halo currents arise when required to slow down the growth of a kink that is too unstable to be stabilized by the chamber walls. The width of the current channelmore » in the halo plasma is comparable to the amplitude of the kink, and the halo current grows linearly, not exponentially, in time. The current density in the halo is comparable to that of the main plasma body. The rocket force due to plasma flowing out of the halo and recombining on the chamber walls can cause the non-axisymmetric magnetic structure produced by the kink to rotate toroidally at a speed comparable to the halo speed of sound. Gerhardt's observations of the halo current in NSTX shot 141 687 [Nucl. Fusion 53, 023005 (2013)] illustrate many features of the theory of halo currents and are discussed as a summary of the theory.« less

Reconstruction of halo power spectrum from redshift-space galaxy distribution: cylinder-grouping method and halo exclusion effect

NASA Astrophysics Data System (ADS)

Okumura, Teppei; Takada, Masahiro; More, Surhud; Masaki, Shogo

2017-07-01

The peculiar velocity field measured by redshift-space distortions (RSD) in galaxy surveys provides a unique probe of the growth of large-scale structure. However, systematic effects arise when including satellite galaxies in the clustering analysis. Since satellite galaxies tend to reside in massive haloes with a greater halo bias, the inclusion boosts the clustering power. In addition, virial motions of the satellite galaxies cause a significant suppression of the clustering power due to non-linear RSD effects. We develop a novel method to recover the redshift-space power spectrum of haloes from the observed galaxy distribution by minimizing the contamination of satellite galaxies. The cylinder-grouping method (CGM) we study effectively excludes satellite galaxies from a galaxy sample. However, we find that this technique produces apparent anisotropies in the reconstructed halo distribution over all the scales which mimic RSD. On small scales, the apparent anisotropic clustering is caused by exclusion of haloes within the anisotropic cylinder used by the CGM. On large scales, the misidentification of different haloes in the large-scale structures, aligned along the line of sight, into the same CGM group causes the apparent anisotropic clustering via their cross-correlation with the CGM haloes. We construct an empirical model for the CGM halo power spectrum, which includes correction terms derived using the CGM window function at small scales as well as the linear matter power spectrum multiplied by a simple anisotropic function at large scales. We apply this model to a mock galaxy catalogue at z = 0.5, designed to resemble Sloan Digital Sky Survey-III Baryon Oscillation Spectroscopic Survey (BOSS) CMASS galaxies, and find that our model can predict both the monopole and quadrupole power spectra of the host haloes up to k < 0.5 {{h Mpc^{-1}}} to within 5 per cent.

Harnessing the microbiome to reduce Fusarium head blight

USDA-ARS?s Scientific Manuscript database

Fusarium graminearum (Fg), the primary fungal pathogen responsible for Fusarium head blight (FHB), reduces crop yield and contaminates grain with trichothecene mycotoxins that are deleterious to plant, human and animal health. In this presentation, we will discuss two different research projects tha...

WEIGHING THE GALACTIC DARK MATTER HALO: A LOWER MASS LIMIT FROM THE FASTEST HALO STAR KNOWN

DOE Office of Scientific and Technical Information (OSTI.GOV)

Przybilla, Norbert; Tillich, Alfred; Heber, Ulrich

2010-07-20

The mass of the Galactic dark matter halo is under vivid discussion. A recent study by Xue et al. revised the Galactic halo mass downward by a factor of {approx}2 relative to previous work, based on the line-of-sight velocity distribution of {approx}2400 blue horizontal-branch (BHB) halo stars. The observations were interpreted with a statistical approach using cosmological galaxy formation simulations, as only four of the six-dimensional phase-space coordinates were determined. Here we concentrate on a close investigation of the stars with the highest negative radial velocity from that sample. For one star, SDSSJ153935.67+023909.8 (J1539+0239 for short), we succeed in measuringmore » a significant proper motion, i.e., full phase-space information is obtained. We confirm the star to be a Population II BHB star from an independent quantitative analysis of the Sloan Digital Sky Survey (SDSS) spectrum-providing the first non-LTE (NLTE) study of any halo BHB star-and reconstruct its three-dimensional trajectory in the Galactic potential. J1539+0239 turns out to be the fastest halo star known to date, with a Galactic rest-frame velocity of 694{sup +300}{sub -221} km s{sup -1} (full uncertainty range from Monte Carlo error propagation) at its current position. The extreme kinematics of the star allows a significant lower limit to be put on the halo mass in order to keep it bound, of M {sub halo} {>=} 1.7{sup +2.3}{sub -1.1} x 10{sup 12} M{sub sun}. We conclude that the Xue et al. results tend to underestimate the true halo mass as their most likely mass value is consistent with our analysis only at a level of 4%. However, our result confirms other studies that make use of the full phase-space information.« less

Is the Milky Way's hot halo convectively unstable?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Henley, David B.; Shelton, Robin L., E-mail: dbh@physast.uga.edu

2014-03-20

We investigate the convective stability of two popular types of model of the gas distribution in the hot Galactic halo. We first consider models in which the halo density and temperature decrease exponentially with height above the disk. These halo models were created to account for the fact that, on some sight lines, the halo's X-ray emission lines and absorption lines yield different temperatures, implying that the halo is non-isothermal. We show that the hot gas in these exponential models is convectively unstable if γ < 3/2, where γ is the ratio of the temperature and density scale heights. Usingmore » published measurements of γ and its uncertainty, we use Bayes' theorem to infer posterior probability distributions for γ, and hence the probability that the halo is convectively unstable for different sight lines. We find that, if these exponential models are good descriptions of the hot halo gas, at least in the first few kiloparsecs from the plane, the hot halo is reasonably likely to be convectively unstable on two of the three sight lines for which scale height information is available. We also consider more extended models of the halo. While isothermal halo models are convectively stable if the density decreases with distance from the Galaxy, a model of an extended adiabatic halo in hydrostatic equilibrium with the Galaxy's dark matter is on the boundary between stability and instability. However, we find that radiative cooling may perturb this model in the direction of convective instability. If the Galactic halo is indeed convectively unstable, this would argue in favor of supernova activity in the Galactic disk contributing to the heating of the hot halo gas.« less

Stabilizing properties of the halo apparatus.

PubMed

Mirza, S K; Moquin, R R; Anderson, P A; Tencer, A F; Steinmann, J; Varnau, D

1997-04-01

A cadaveric cervical spine specimen fixed between a fiberglass torso and a plastic skull was used as a model to determine the effect of halo structural parameters on motion at a lesion simulated at C5-C6. In a second part, nine commercially available halo devices were compared. To define the contributions of the various components of the halo apparatus to reducing motion in an injured cervical spine and to compare the stability offered by a sample of commercially available halo devices. Controversy exists concerning the ability of the halo apparatus to stabilize the injured cervical spine. The halo apparatus has been shown to be the most effective nonsurgical method for stabilizing the fractured spine. Nonetheless, several clinical studies have demonstrated that unacceptably large motions can occur at the injured spinal segment stabilized with a halo apparatus. Each cadaveric cervical spine was mounted onto a fiberglass torso and a rigid plastic skull was attached to the base of the occiput. A posterior ligamentous lesion was created between C5 and C6. The halo ring was fitted to the skull and a vest to the torso. Loads were applied to the skull in flexion, extension, and lateral bending, and relative angulation between C5 and C6 was measured with electroinclinometers. In the first part, the effect of parameters such as vest tightness, vest-thorax friction, vest deformation, and connecting bar rigidity on spinal angulation were measured using one vest. In the second part, the stability offered by each of nine commercially available halo devices was compared. Increasing chest strap tightness and decreasing vest deformation reduced angulation at the spinal lesion. Once connecting bar joints were tightened to 25% of their recommended torque, increased tightening or adding additional bars had no effect on rigidity. Although specific vests permitted significantly greater motion in specific directions, no vest allowed greater angulation consistently in all loading planes

Concentrations of Simulated Dark Matter Halos

NASA Astrophysics Data System (ADS)

Child, Hillary

2017-01-01

We present the concentration-mass (c-M) relation of dark matter halos in two new high-volume high-resolution cosmological N-body simulations, Q Continuum and Outer Rim. Concentration describes the density of the central regions of halos; it is highest for low-mass halos at low redshift, decreasing at high mass and redshift. The shape of the c-M relation is an important probe of cosmology. We discuss the redshift dependence of the c-M relation, several different methods to determine concentrations of simulated halos, and potential sources of bias in concentration measurements. To connect to lensing observations, we stack halos, which also allows us to assess the suitability of the Navarro-Frenk-White profile and other profiles, such as Einasto, with an additional shape parameter. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1144082.

Unbound particles in dark matter halos

DOE Office of Scientific and Technical Information (OSTI.GOV)

Behroozi, Peter S.; Wechsler, Risa H.; Loeb, Abraham, E-mail: behroozi@stanford.edu, E-mail: aloeb@cfa.harvard.edu, E-mail: rwechsler@stanford.edu

2013-06-01

We investigate unbound dark matter particles in halos by tracing particle trajectories in a simulation run to the far future (a = 100). We find that the traditional sum of kinetic and potential energies is a very poor predictor of which dark matter particles will eventually become unbound from halos. We also study the mass fraction of unbound particles, which increases strongly towards the edges of halos, and decreases significantly at higher redshifts. We discuss implications for dark matter detection experiments, precision calibrations of the halo mass function, the use of baryon fractions to constrain dark energy, and searches formore » intergalactic supernovae.« less

Unbound particles in dark matter halos

DOE Office of Scientific and Technical Information (OSTI.GOV)

Behroozi, Peter S.; Loeb, Abraham; Wechsler, Risa H.

2013-06-13

We investigate unbound dark matter particles in halos by tracing particle trajectories in a simulation run to the far future (a = 100). We find that the traditional sum of kinetic and potential energies is a very poor predictor of which dark matter particles will eventually become unbound from halos. We also study the mass fraction of unbound particles, which increases strongly towards the edges of halos, and decreases significantly at higher redshifts. We discuss implications for dark matter detection experiments, precision calibrations of the halo mass function, the use of baryon fractions to constrain dark energy, and searches formore » intergalactic supernovae.« less

Detection of gene expression changes in Capsicum annuum L. leaf foliar blight caused by Phytophthora capsici Leon. using qRT-PCR and leaf discs

USDA-ARS?s Scientific Manuscript database

Phytophthora capsici is responsible for multiple disease syndromes of Capsicum annuum but the resistance mechanism is still unknown. Evaluating gene expression during foliar blight can be used to identify expression patterns associated with resistance in Capsicum species. This study reports a direct...

Thiamine primed defense provides reliable alternative to systemic fungicide carbendazim against sheath blight disease in rice (Oryza sativa L.).

PubMed

Bahuguna, Rajeev Nayan; Joshi, Rohit; Shukla, Alok; Pandey, Mayank; Kumar, J

2012-08-01

A novel pathogen defense strategy by thiamine priming was evaluated for its efficacy against sheath blight pathogen, Rhizoctonia solani AG-1A, of rice and compared with that of systemic fungicide, carbendazim (BCM). Seeds of semidwarf, high yielding, basmati rice variety Vasumati were treated with thiamine (50 mM) and BCM (4 mM). The pot cultured plants were challenge inoculated with R. solani after 40 days of sowing and effect of thiamine and BCM on rice growth and yield traits was examined. Higher hydrogen peroxide content, total phenolics accumulation, phenylalanine ammonia lyase (PAL) activity and superoxide dismutase (SOD) activity under thiamine treatment displayed elevated level of systemic resistance, which was further augmented under challenging pathogen infection. High transcript level of phenylalanine ammonia lyase (PAL) and manganese superoxide dismutase (MnSOD) validated mode of thiamine primed defense. Though minimum disease severity was observed under BCM treatment, thiamine produced comparable results, with 18.12 per cent lower efficacy. Along with fortifying defense components and minor influence on photosynthetic pigments and nitrate reductase (NR) activity, thiamine treatment significantly reduced pathogen-induced loss in photosynthesis, stomatal conductance, chlorophyll fluorescence, NR activity and NR transcript level. Physiological traits affected under pathogen infection were found signatory for characterizing plant's response under disease and were detectable at early stage of infection. These findings provide a novel paradigm for developing alternative, environmentally safe strategies to control plant diseases. Copyright © 2012 Elsevier Masson SAS. All rights reserved.

Effective field theory description of halo nuclei

NASA Astrophysics Data System (ADS)

Hammer, H.-W.; Ji, C.; Phillips, D. R.

2017-10-01

Nuclear halos emerge as new degrees of freedom near the neutron and proton driplines. They consist of a core and one or a few nucleons which spend most of their time in the classically-forbidden region outside the range of the interaction. Individual nucleons inside the core are thus unresolved in the halo configuration, and the low-energy effective interactions are short-range forces between the core and the valence nucleons. Similar phenomena occur in clusters of 4He atoms, cold atomic gases near a Feshbach resonance, and some exotic hadrons. In these weakly-bound quantum systems universal scaling laws for s-wave binding emerge that are independent of the details of the interaction. Effective field theory (EFT) exposes these correlations and permits the calculation of non-universal corrections to them due to short-distance effects, as well as the extension of these ideas to systems involving the Coulomb interaction and/or binding in higher angular-momentum channels. Halo nuclei exhibit all these features. Halo EFT, the EFT for halo nuclei, has been used to compute the properties of single-neutron, two-neutron, and single-proton halos of s-wave and p-wave type. This review summarizes these results for halo binding energies, radii, Coulomb dissociation, and radiative capture, as well as the connection of these properties to scattering parameters, thereby elucidating the universal correlations between all these observables. We also discuss how Halo EFT's encoding of the long-distance physics of halo nuclei can be used to check and extend ab initio calculations that include detailed modeling of their short-distance dynamics.

Cosmic Vorticity and the Origin Halo Spins

NASA Astrophysics Data System (ADS)

Libeskind, Noam I.; Hoffman, Yehuda; Steinmetz, Matthias; Gottlöber, Stefan; Knebe, Alexander; Hess, Steffen

2013-04-01

In the standard model of cosmology, structure emerges out of a non-rotational flow and the angular momentum of collapsing halos is induced by tidal torques. The growth of angular momentum in the linear and quasi-linear phases is associated with a shear, curl-free, flow and it is well described within the linear framework of tidal torque theory (TTT). However, TTT ceases to be applicable as halos approach turnaround when their ambient flow field becomes rotational. Subsequently, halos become embedded in a vortical flow field and the growth of their angular momentum is affected by the vorticity of their ambient velocity field. Using a cosmological simulation, we have examined the importance of the curl of the velocity field in determining halo spin, finding a significant alignment between the two: the vorticity tends to be perpendicular to the axis of the fastest collapse of the velocity shear tensor (e 1). This is independent of halo masses and cosmic web environment. Our results agree with previous findings on the tendency of halo spin to be perpendicular to e 1, and of the spin of (simulated) halos and (observed) galaxies to be aligned with the large-scale structure. It follows that angular momentum growth proceeds in two distinct phases. First, the angular momentum emerges out of a shear, curl-free, potential flow, as described by TTT. In the second phase, in which halos approach virialization, the angular momentum emerges out of a vortical flow and halo spin becomes partially aligned with the vorticity of the ambient flow field.

Dark matter haloes: a multistream view

NASA Astrophysics Data System (ADS)

Ramachandra, Nesar S.; Shandarin, Sergei F.

2017-09-01

Mysterious dark matter constitutes about 85 per cent of all masses in the Universe. Clustering of dark matter plays a dominant role in the formation of all observed structures on scales from a fraction to a few hundreds of Mega-parsecs. Galaxies play a role of lights illuminating these structures so they can be observed. The observations in the last several decades have unveiled opulent geometry of these structures currently known as the cosmic web. Haloes are the highest concentrations of dark matter and host luminous galaxies. Currently the most accurate modelling of dark matter haloes is achieved in cosmological N-body simulations. Identifying the haloes from the distribution of particles in N-body simulations is one of the problems attracting both considerable interest and efforts. We propose a novel framework for detecting potential dark matter haloes using the field unique for dark matter-multistream field. The multistream field emerges at the non-linear stage of the growth of perturbations because the dark matter is collisionless. Counting the number of velocity streams in gravitational collapses supplements our knowledge of spatial clustering. We assume that the virialized haloes have convex boundaries. Closed and convex regions of the multistream field are hence isolated by imposing a positivity condition on all three eigenvalues of the Hessian estimated on the smoothed multistream field. In a single-scale analysis of high multistream field resolution and low softening length, the halo substructures with local multistream maxima are isolated as individual halo sites.

Two distinct major QTL for resistance to fire blight co-localize on linkage group 12 in apple genotypes 'Evereste' and Malus floribunda clone 821.

PubMed

Durel, C-E; Denancé, C; Brisset, M-N

2009-02-01

Fire blight, caused by the bacterium Erwinia amylovora, is one of the most destructive diseases of apple (Malus xdomestica) worldwide. No major, qualitative gene for resistance to this disease has been identified so far in apple. A quantitative trait locus (QTL) analysis was performed in two F1 progenies derived from two controled crosses: one between the susceptible rootstock cultivar 'MM106' and the resistant ornamental cultivar 'Evereste' and the other one between the moderately susceptible cultivar 'Golden Delicious' and the wild apple Malus floribunda clone 821, with unknown level of fire blight resistance. Both progenies were inoculated in the greenhouse with the same reference strain of E. amylovora. The length of stem necrosis was scored 7 and 14 days after inoculation. A strong QTL effect was identified in both 'Evereste' and M. floribunda 821 at a similar position on the distal region of linkage group 12 of the apple genome. From 50% to 70% of the phenotypic variation was explained by the QTL in 'Evereste' progeny according to the scored trait. More than 40% of the phenotypic variation was explained by the M. floribunda QTL in the second progeny. It was shown that 'Evereste' and M. floribunda 821 carried distinct QTL alleles at that genomic position. A small additional QTL was identified in 'Evereste' on linkage group 15, which explained about 6% of the phenotypic variation. Although it was not possible to confirm whether or not 'Evereste' and M. floribunda QTL belonged to the same locus or two distinct closely related loci, these QTL can be valuable targets in marker-assisted selection to obtain fire blight resistant apple cultivars and form a starting point for discovering the function of the genes controlling apple fire blight resistance.

On the scatter in the relation between stellar mass and halo mass: random or halo formation time dependent?

NASA Astrophysics Data System (ADS)

Wang, Lan; De Lucia, Gabriella; Weinmann, Simone M.

2013-05-01

The empirical traditional halo occupation distribution (HOD) model of Wang et al. fits, by construction, both the stellar mass function and correlation function of galaxies in the local Universe. In contrast, the semi-analytical models of De Lucia & Blazoit (hereafter DLB07) and Guo et al. (hereafter Guo11), built on the same dark matter halo merger trees than the empirical model, still have difficulties in reproducing these observational data simultaneously. We compare the relations between the stellar mass of galaxies and their host halo mass in the three models, and find that they are different. When the relations are rescaled to have the same median values and the same scatter as in Wang et al., the rescaled DLB07 model can fit both the measured galaxy stellar mass function and the correlation function measured in different galaxy stellar mass bins. In contrast, the rescaled Guo11 model still overpredicts the clustering of low-mass galaxies. This indicates that the detail of how galaxies populate the scatter in the stellar mass-halo mass relation does play an important role in determining the correlation functions of galaxies. While the stellar mass of galaxies in the Wang et al. model depends only on halo mass and is randomly distributed within the scatter, galaxy stellar mass depends also on the halo formation time in semi-analytical models. At fixed value of infall mass, galaxies that lie above the median stellar mass-halo mass relation reside in haloes that formed earlier, while galaxies that lie below the median relation reside in haloes that formed later. This effect is much stronger in Guo11 than in DLB07, which explains the overclustering of low mass galaxies in Guo11. Assembly bias in Guo11 model might be overly strong. Nevertheless, in case that a significant assembly bias indeed exists in the real Universe, one needs to use caution when applying current HOD and abundance matching models that employ the assumption of random scatter in the relation

The HALO / HALO-2 Supernova Neutrino Detectors

NASA Astrophysics Data System (ADS)

Yen, Stanley; HALO Collaboration; HALO-2 Collaboration

2016-09-01

The Helium and Lead Observatory (HALO) is a dedicated supernova neutrino detector in SNOLAB, which is built from 79 tons of surplus lead and the helium-3 neutron detectors from the SNO experiment. It is sensitive primarily to electron neutrinos, and is thus complementary to water Cerenkov and organic scintillation detectors which are primarily sensitive to electron anti-neutrinos. A comparison of the rates in these complementary detectors will enable a flavor decomposition of the neutrino flux from the next galactic core-collapse supernova. We have tentative ideas to build a 1000-ton HALO-2 detector in the Gran Sasso laboratory by using the lead from the decommissioned OPERA detector. We are exploring several neutron detector technologies to supplement the existing helium-3 detectors. We welcome new collaborators to join us. This research is supported by the NRC and NSERC (Canada), the US DOE and NSF, and the German RISE program.

[Effect of biopesticide Pythium oligandrum broth on gummy stem blight in cucumber seedlings, animal health and plant growth].

PubMed

Geng, Mingming; Jia, Ruilian; Sui, Zongming; Huang, Jianguo

2016-07-04

Biopesticides are safe and environment friendly. We evaluated the biocontrol effect of Pythium oligandrum broth (POB) and its toxicity to animals and plant growth. Animal, antagonist, pot, and field experiments with mice, Mycosphaerella melonis, and cucumber seedlings were carried out to study animal toxicity, control of gummy stem blight, plant growth, fruit yield and quality with POB produced from self-isolated P. oligandrum CQ2010. Mouse showed normal weight, appearances, performances and no pathogenic changes in organs and tissues with a large amount of POB supplied by lavage. The inhibition rate of POB against M. melonis was 51.95%, similar to thiophanate methy (800 times dilution) but much higher than chlorothalonil (200 times dilution). Malondialdehyde concentration was reduced whereas activities of peroxidase and superoxide dismutase were stimulated in seedling leaves irrespective of POB supplied before and after pathogenic inoculation. POB also decreased the pathogenic incidence and disease index with relative control efficacy from 54.8% to 64.1%. Thus, POB could alleviate cell membrane damage caused by pathogenic microbes, stimulate physiological reactions related to disease defense, and increase disease-resistant abilities of plants. Moreover, POB increased chlorophyll content, root activity, and uptake of nitrogen, phosphorus and potassium, resulting in growth acceleration, fruit yield increment, and quality improvement. POB is safe to animals and could control gummy stem blight of cucumber seedlings, promote plant growth, increase fruit yield, and improve the qualities.

Smooth halos in the cosmic web

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gaite, José, E-mail: jose.gaite@upm.es

Dark matter halos can be defined as smooth distributions of dark matter placed in a non-smooth cosmic web structure. This definition of halos demands a precise definition of smoothness and a characterization of the manner in which the transition from smooth halos to the cosmic web takes place. We introduce entropic measures of smoothness, related to measures of inequality previously used in economy and with the advantage of being connected with standard methods of multifractal analysis already used for characterizing the cosmic web structure in cold dark matter N-body simulations. These entropic measures provide us with a quantitative description ofmore » the transition from the small scales portrayed as a distribution of halos to the larger scales portrayed as a cosmic web and, therefore, allow us to assign definite sizes to halos. However, these ''smoothness sizes'' have no direct relation to the virial radii. Finally, we discuss the influence of N-body discreteness parameters on smoothness.« less

Induction of DIMBOA accumulation and systemic defense responses as a mechanism of enhanced resistance of mycorrhizal corn (Zea mays L.) to sheath blight.

PubMed

Song, Yuan Yuan; Cao, Man; Xie, Li Jun; Liang, Xiao Ting; Zeng, Ren Sen; Su, Yi Juan; Huang, Jing Hua; Wang, Rui Long; Luo, Shi Ming

2011-11-01

Arbuscular mycorrhizas are the most important symbioses in terrestrial ecosystems and they enhance the plant defense against numerous soil-borne pathogenic fungi and nematodes. Two corn (Zea mays) varieties, Gaoyou-115 that is susceptible to sheath blight disease caused by Rhizoctonia solani and Yuenong-9 that is resistant, were used for mycorrhizal inoculation in this study. Pre-inoculation of susceptible Gaoyou-115 with arbuscular mycorrhizal fungus (AMF) Glomus mosseae significantly reduced the disease incidence and disease severity of sheath blight of corn. HPLC analysis showed that AMF inoculation led to significant increase in 2,4-dihydroxy-7-methoxy-2 H-1,4-benzoxazin-3(4 H)-one (DIMBOA) accumulation in the roots of both corn varieties and in leaves of resistant Yuenong-9. R. solani inoculation alone did not result in accumulation of DIMBOA in both roots and leaves of the two corn varieties. Our previous study showed that DIMBOA strongly inhibited mycelial growth of R. solani in vitro. Real-time PCR analysis showed that mycorrhizal inoculation itself did not affect the transcripts of most genes tested. However, pre-inoculation with G. mosseae induced strong responses of three defense-related genes PR2a, PAL, and AOS, as well as BX9, one of the key genes in DIMBOA biosynthesis pathway, in the leaves of corn plants of both Yuenong-9 and Gaoyou-115 after the pathogen attack. Induction of defense responses in pre-inoculated plants was much higher and quicker than that in non-inoculated plants upon R. solani infection. These results indicate that induction of accumulation of DIMBOA, an important phytoalexin in corn, and systemic defense responses by AMF, plays a vital role in enhanced disease resistance of mycorrhizal plants of corn against sheath blight. This study also suggests that priming is an important mechanism in mycorrhiza-induced resistance.

COSMIC VORTICITY AND THE ORIGIN HALO SPINS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Libeskind, Noam I.; Steinmetz, Matthias; Gottloeber, Stefan

2013-04-01

In the standard model of cosmology, structure emerges out of a non-rotational flow and the angular momentum of collapsing halos is induced by tidal torques. The growth of angular momentum in the linear and quasi-linear phases is associated with a shear, curl-free, flow and it is well described within the linear framework of tidal torque theory (TTT). However, TTT ceases to be applicable as halos approach turnaround when their ambient flow field becomes rotational. Subsequently, halos become embedded in a vortical flow field and the growth of their angular momentum is affected by the vorticity of their ambient velocity field.more » Using a cosmological simulation, we have examined the importance of the curl of the velocity field in determining halo spin, finding a significant alignment between the two: the vorticity tends to be perpendicular to the axis of the fastest collapse of the velocity shear tensor (e{sub 1}). This is independent of halo masses and cosmic web environment. Our results agree with previous findings on the tendency of halo spin to be perpendicular to e{sub 1}, and of the spin of (simulated) halos and (observed) galaxies to be aligned with the large-scale structure. It follows that angular momentum growth proceeds in two distinct phases. First, the angular momentum emerges out of a shear, curl-free, potential flow, as described by TTT. In the second phase, in which halos approach virialization, the angular momentum emerges out of a vortical flow and halo spin becomes partially aligned with the vorticity of the ambient flow field.« less

Halo Intrinsic Alignment: Dependence on Mass, Formation Time, and Environment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xia, Qianli; Kang, Xi; Wang, Peng

In this paper we use high-resolution cosmological simulations to study halo intrinsic alignment and its dependence on mass, formation time, and large-scale environment. In agreement with previous studies using N -body simulations, it is found that massive halos have stronger alignment. For the first time, we find that for a given halo mass older halos have stronger alignment and halos in cluster regions also have stronger alignment than those in filaments. To model these dependencies, we extend the linear alignment model with inclusion of halo bias and find that the halo alignment with its mass and formation time dependence canmore » be explained by halo bias. However, the model cannot account for the environment dependence, as it is found that halo bias is lower in clusters and higher in filaments. Our results suggest that halo bias and environment are independent factors in determining halo alignment. We also study the halo alignment correlation function and find that halos are strongly clustered along their major axes and less clustered along the minor axes. The correlated halo alignment can extend to scales as large as 100 h {sup −1} Mpc, where its feature is mainly driven by the baryon acoustic oscillation effect.« less

Identification of quantitative trait loci (QTLs) responsible for sheath blight resistance in rice using recombinant inbred line population of Lemont X Jasmine 85

USDA-ARS?s Scientific Manuscript database

Rice sheath blight (RSB) caused by the soil borne pathogen Rhizoctonia solani, is one of the most destructive diseases of rice, causing severe losses in rice yield and quality annually. The major gene (s) governing the resistance to RSB have not been found in cultivated rice worldwide. However, ri...

Halo vest effect on balance.

PubMed

Richardson, J K; Ross, A D; Riley, B; Rhodes, R L

2000-03-01

To determine the effect of a halo vest, a cervical orthosis, on clinically relevant balance parameters. Subjects performed unipedal stance (with eyes open and closed, on both firm and soft surfaces) and functional reach, with and without the application of a halo vest. A convenience sample of 12 healthy young subjects, with an equal number of men and women. Seconds for unipedal stance (maximum 45); inches for functional reach. Both unipedal stance times and functional reach (mean +/- standard deviation) were significantly decreased with the halo vest as compared to without it (29.1+/-5.8 vs. 32.8+/-6.4 seconds, p = .002; 12.9+/-1.4 vs. 15.1+/-2.1 inches, p<.01). A halo vest causes an acute impairment in balance in the healthy young. It is likely that the impairment would be greater in older or injured patients, thus increasing their risk for a fall, which could have devastating consequences.

The Outer Halos of Early-Type Galaxies

NASA Astrophysics Data System (ADS)

Gerhard, Ortwin; Arnaboldi, Magda; Longobardi, Alessia

2015-04-01

The outer halos of massive early-type galaxies (ETGs) are dark matter dominated and may have formed by accretion of smaller systems during galaxy evolution. Here a brief report is given of some recent work on the kinematics, angular momentum, and mass distributions of simulated ETG halos, and of corresponding properties of observed halos measured with planetary nebulae (PNe) as tracers. In the outermost regions of the Virgo-central galaxy M87, the PN data show that the stellar halo and the co-spatial intracluster light are distinct kinematic components.

Spatial Analysis of Phytophthora infestans Genotypes and Late Blight Severity on Tomato and Potato in the Del Fuerte Valley Using Geostatistics and Geographic Information Systems.

PubMed

Jaime-Garcia, R; Orum, T V; Felix-Gastelum, R; Trinidad-Correa, R; Vanetten, H D; Nelson, M R

2001-12-01

ABSTRACT Genetic structure of Phytophthora infestans, the causal agent of potato and tomato late blight, was analyzed spatially in a mixed potato and tomato production area in the Del Fuerte Valley, Sinaloa, Mexico. Isolates of P. infestans were characterized by mating type, allozyme analysis at the glucose-6-phosphate isomerase and peptidase loci, restriction fragment length polymorphism with probe RG57, metalaxyl sensitivity, and aggressiveness to tomato and potato. Spatial patterns of P. infestans genotypes were analyzed by geographical information systems and geo-statistics during the seasons of 1994-95, 1995-96, and 1996-97. Spatial analysis of the genetic structure of P. infestans indicates that geographic substructuring of this pathogen occurs in this area. Maps displaying the probabilities of occurrence of mating types and genotypes of P. infestans, and of disease severity at a regional scale, were presented. Some genotypes that exhibited differences in epidemiologically important features such as metalaxyl sensitivity and aggressiveness to tomato and potato had a restricted spread and were localized in isolated areas. Analysis of late blight severity showed recurring patterns, such as the earliest onset of the disease in the area where both potato and tomato were growing, strengthening the hypothesis that infected potato tubers are the main source of primary inoculum. The information that geostatistical analysis provides might help improve management programs for late blight in the Del Fuerte Valley.

Identification of novel strain-specific and environment-dependent minor QTLs linked to fire blight resistance in apples

USDA-ARS?s Scientific Manuscript database

Since its first report almost 200 years ago, fire blight, caused by the gram negative bacterium Erwinia amylovora, has threatened apple and pear production globally. Identifying novel genes and their functional alleles is a prerequisite to developing apple cultivars with enhanced fire blight resist...

Stemphylium Leaf Blight of Garlic (Allium sativum ) in Spain: Taxonomy and In Vitro Fungicide Response

PubMed Central

Gálvez, Laura; Gil-Serna, Jéssica; García, Marta; Iglesias, Concepción; Palmero, Daniel

2016-01-01

The most serious aerial disease of garlic is leaf blight caused by Stemphylium spp. Geographical variation in the causal agent of this disease is indicated. Stemphylium vesicarium has been reported in Spain, whereas S. solani is the most prevalent species recorded in China. In this study, Stemphylium isolates were obtained from symptomatic garlic plants sampled from the main Spanish production areas. Sequence data for the ITS1–5.8S–ITS2 region enabled assignation of the isolates to the Pleospora herbarum complex and clearly distinguished the isolates from S. solani. Conidial morphology of the isolates corresponded to that of S. vesicarium and clearly discriminated them from S. alfalfae and S. herbarum on the basis of the size and septation pattern of mature conidia. Conidial morphology as well as conidial length, width and length:width ratio also allowed the Spanish isolates to be distinguished from S. botryosum and S. herbarum. Control of leaf blight of garlic is not well established. Few studies are available regarding the effectiveness of chemical treatments to reduce Stemphylium spp. incidence on garlic. The effectiveness of nine fungicides of different chemical groups to reduce Stemphylium mycelial growth in vitro was tested. Boscalid + pyraclostrobin (group name, succinate dehydrogenase inhibitors + quinone outside inhibitors), iprodione (dicar-boximide), and prochloraz (demethylation inhibitors) were highly effective at reducing mycelial growth in S. vesicarium with EC50 values less than 5 ppm. In general, the effectiveness of the fungicide was enhanced with increasing dosage. PMID:27721688

Simulation of halo particles with Simpsons

NASA Astrophysics Data System (ADS)

Machida, Shinji

2003-12-01

Recent code improvements and some simulation results of halo particles with Simpsons will be presented. We tried to identify resonance behavior of halo particles by looking at tune evolution of individual macro particle.

Characterization and antagonistic properties of Streptomyces strains isolated from Saharan soils, and evaluation of their ability to control seedling blight of barley caused by Fusarium culmorum.

PubMed

Yekkour, A; Sabaou, N; Zitouni, A; Errakhi, R; Mathieu, F; Lebrihi, A

2012-12-01

During a screening for potential plant disease control actinomycetes, a total of 133 strains were isolated from Saharan soil samples of seven Algerian regions by dilution technique on chitin-vitamins agar medium. Screening for antagonistic properties using streak assay method showed that 25% of isolates demonstrated strong activities against a wide range of plant pathogenic fungi. Due to their strong anti-Fusarium activities, six of these isolates were selected and subsequently related to Streptomyces species by polyphasic analysis. These isolates were evaluated for their biocontrol ability against Fusarium culmorum, a serious pathogenic fungus of cereals crops related to damping-off and seedling blight resulting in yield loss. Barley seeds were chosen as cereal plant model. Surface bacterized seeds with TW3, RI3 and TW2 strains expressed the highest performances and permit to reduce significantly both the disease occurrence on seedlings (62-76%) and the extent of seedling blight symptoms (over than 95%). However, a negative effect on plant establishment was observed for RI3 treatment. The genus Fusarium is considered to be one of the most problematic phytopathogenic fungi for crop culture worldwide. Inside this genus, F. culmorum is the aetiological agent of seedling blight in various monocotyledonous plants such as barley and cause extensive yield and quality losses in humid and semi-humid regions. Biological control may be a successful alternative to chemical control, particularly with the controversy surrounding the use of the fungicides and the limited obtained results to control F. culmorum. This study highlights the effectiveness of some antagonistic Streptomyces isolated from Algerian Saharan soils to control F. culmorum by the reduction in disease occurrence and disease severity suggesting their use on microbial biocontrol formulation against soilborne diseases. © 2012 The Society for Applied Microbiology.

Integrated Control of Fire Blight with Antagonists and Oxytetracycline

USDA-ARS?s Scientific Manuscript database

In the Pacific Northwest of the United States, the antibiotic streptomycin provided excellent control of fire blight until resistant isolates of Erwinia amylovora arose. Oxytetracycline (Mycoshield) is now sprayed as an alternative antibiotic. We found that the duration of inhibitory activity of o...

Self-consistent construction of virialized wave dark matter halos

NASA Astrophysics Data System (ADS)

Lin, Shan-Chang; Schive, Hsi-Yu; Wong, Shing-Kwong; Chiueh, Tzihong

2018-05-01

Wave dark matter (ψ DM ), which satisfies the Schrödinger-Poisson equation, has recently attracted substantial attention as a possible dark matter candidate. Numerical simulations have, in the past, provided a powerful tool to explore this new territory of possibility. Despite their successes in revealing several key features of ψ DM , further progress in simulations is limited, in that cosmological simulations so far can only address formation of halos below ˜2 ×1011 M⊙ and substantially more massive halos have become computationally very challenging to obtain. For this reason, the present work adopts a different approach in assessing massive halos by constructing wave-halo solutions directly from the wave distribution function. This approach bears certain similarities with the analytical construction of the particle-halo (cold dark matter model). Instead of many collisionless particles, one deals with one single wave that has many noninteracting eigenstates. The key ingredient in the wave-halo construction is the distribution function of the wave power, and we use several halos produced by structure formation simulations as templates to determine the wave distribution function. Among different models, we find the fermionic King model presents the best fits and we use it for our wave-halo construction. We have devised an iteration method for constructing the nonlinear halo and demonstrate its stability by three-dimensional simulations. A Milky Way-sized halo has also been constructed, and the inner halo is found to be flatter than the NFW profile. These wave-halos have small-scale interferences both in space and time producing time-dependent granules. While the spatial scale of granules varies little, the correlation time is found to increase with radius by 1 order of magnitude across the halo.

QTL analysis of late blight resistance in a diploid potato family of Solanum phureja x S. stenotomum.

PubMed

Costanzo, S; Simko, I; Christ, B J; Haynes, K G

2005-08-01

Field resistance to Phytophthora infestans (Mont.) de Bary, the causal agent of late blight in potatoes, has been characterized in a potato segregating family of 230 full-sib progenies derived from a cross between two hybrid Solanum phureja x S. stenotomum clones. The distribution of area under the disease progress curve values, measured in different years and locations, was consistent with the inheritance of multigenic resistance. Relatively high levels of resistance and transgressive segregations were also observed within this family. A genetic linkage map of this population was constructed with the intent of mapping quantitative trait loci (QTLs) associated with this late blight field resistance. A total of 132 clones from this family were genotyped based on 162 restriction fragment length polymorphism (RFLP) markers. The genome coverage by the map (855.2 cM) is estimated to be at least 70% and includes 112 segregating RFLP markers and two phenotypic markers, with an average distance of 7.7 cM between two markers. Two methods were employed to determine trait-marker association, the non-parametric Kruskal-Wallis test and interval mapping analysis. Three major QTLs were detected on linkage group III, V, and XI, explaining 23, 17, and 10%, respectively, of the total phenotypic variation. The present study revealed the presence of potentially new genetic loci in this diploid potato family contributing to general resistance against late blight. The identification of these QTLs represents the first step toward their introgression into cultivated tetraploid potato cultivars through marker-assisted selection.

Exploration of Using Antisense Peptide Nucleic Acid (PNA)-cell Penetrating Peptide (CPP) as a Novel Bactericide against Fire Blight Pathogen Erwinia amylovora.

PubMed

Patel, Ravi R; Sundin, George W; Yang, Ching-Hong; Wang, Jie; Huntley, Regan B; Yuan, Xiaochen; Zeng, Quan

2017-01-01

Erwinia amylovora is a Gram-negative bacterial plant pathogen in the family Enterobacteriaceae and is the causal agent of fire blight, a devastating disease of apple and pear. Fire blight is traditionally managed by the application of the antibiotic streptomycin during bloom, but this strategy has been challenged by the development and spread of streptomycin resistance. Thus, there is an urgent need for effective, specific, and sustainable control alternatives for fire blight. Antisense antimicrobials are oligomers of nucleic acid homologs with antisense sequence of essential genes in bacteria. The binding of these molecules to the mRNA of essential genes can result in translational repression and antimicrobial effect. Here, we explored the possibility of developing antisense antimicrobials against E. amylovora and using these compounds in fire blight control. We determined that a 10-nucleotide oligomer of peptide nucleic acid (PNA) targeting the start codon region of an essential gene acpP is able to cause complete growth inhibition of E. amylovora . We found that conjugation of cell penetrating peptide (CPP) to PNA is essential for the antimicrobial effect, with CPP1 [(KFF)3K] being the most effective against E. amylovora . The minimal inhibitory concentration (MIC) of anti- acpP -CPP1 (2.5 μM) is comparable to the MIC of streptomycin (2 μM). Examination of the antimicrobial mechanisms demonstrated that anti- acpP -CPP1 caused dose-dependent reduction of acpP mRNA in E. amylovora upon treatment and resulted in cell death (bactericidal effect). Anti- acpP -CPP1 (100 μM) is able to effectively limit the pathogen growth on stigmas of apple flowers, although less effective than streptomycin. Finally, unlike streptomycin that does not display any specificity in inhibiting pathogen growth, anti- acpP -CPP1 has more specific antimicrobial effect against E. amylovora . In summary, we demonstrated that PNA-CPP can cause an effective, specific antimicrobial effect

Exploration of Using Antisense Peptide Nucleic Acid (PNA)-cell Penetrating Peptide (CPP) as a Novel Bactericide against Fire Blight Pathogen Erwinia amylovora

PubMed Central

Patel, Ravi R.; Sundin, George W.; Yang, Ching-Hong; Wang, Jie; Huntley, Regan B.; Yuan, Xiaochen; Zeng, Quan

2017-01-01

Erwinia amylovora is a Gram-negative bacterial plant pathogen in the family Enterobacteriaceae and is the causal agent of fire blight, a devastating disease of apple and pear. Fire blight is traditionally managed by the application of the antibiotic streptomycin during bloom, but this strategy has been challenged by the development and spread of streptomycin resistance. Thus, there is an urgent need for effective, specific, and sustainable control alternatives for fire blight. Antisense antimicrobials are oligomers of nucleic acid homologs with antisense sequence of essential genes in bacteria. The binding of these molecules to the mRNA of essential genes can result in translational repression and antimicrobial effect. Here, we explored the possibility of developing antisense antimicrobials against E. amylovora and using these compounds in fire blight control. We determined that a 10-nucleotide oligomer of peptide nucleic acid (PNA) targeting the start codon region of an essential gene acpP is able to cause complete growth inhibition of E. amylovora. We found that conjugation of cell penetrating peptide (CPP) to PNA is essential for the antimicrobial effect, with CPP1 [(KFF)3K] being the most effective against E. amylovora. The minimal inhibitory concentration (MIC) of anti-acpP-CPP1 (2.5 μM) is comparable to the MIC of streptomycin (2 μM). Examination of the antimicrobial mechanisms demonstrated that anti-acpP-CPP1 caused dose-dependent reduction of acpP mRNA in E. amylovora upon treatment and resulted in cell death (bactericidal effect). Anti-acpP-CPP1 (100 μM) is able to effectively limit the pathogen growth on stigmas of apple flowers, although less effective than streptomycin. Finally, unlike streptomycin that does not display any specificity in inhibiting pathogen growth, anti-acpP-CPP1 has more specific antimicrobial effect against E. amylovora. In summary, we demonstrated that PNA–CPP can cause an effective, specific antimicrobial effect against E

Food safety evaluation for R-proteins introduced by biotechnology: A case study of VNT1 in late blight protected potatoes.

PubMed

Habig, Jeffrey W; Rowland, Aaron; Pence, Matthew G; Zhong, Cathy X

2018-06-01

Resistance genes (R-genes) from wild potato species confer protection against disease and can be introduced into cultivated potato varieties using breeding or biotechnology. The R-gene, Rpi-vnt1, which encodes the VNT1 protein, protects against late blight, caused by Phytophthora infestans. Heterologous expression and purification of active VNT1 in quantities sufficient for regulatory biosafety studies was problematic, making it impractical to generate hazard characterization data. As a case study for R-proteins, a weight-of-evidence, tiered approach was used to evaluate the safety of VNT1. The hazard potential of VNT1 was identified from relevant safety information including history of safe use, bioinformatics, mode of action, expression levels, and dietary intake. From the assessment it was concluded that Tier II hazard characterization was not needed. R-proteins homologous to VNT1 and identified in edible crops, have a history of safe consumption. VNT1 does not share sequence identity with known allergens. Expression levels of R-proteins are generally low, and VNT1 was not detected in potato varieties expressing the Rpi-vnt1 gene. With minimal hazard and negligible exposure, the risks associated with consumption of R-proteins in late blight protected potatoes are exceedingly low. R-proteins introduced into potatoes to confer late blight protection are safe for consumption. Copyright © 2018 Elsevier Inc. All rights reserved.

[Halos and multifocal intraocular lenses: origin and interpretation].

PubMed

Alba-Bueno, F; Vega, F; Millán, M S

2014-10-01

To present the theoretical and experimental characterization of the halo in multifocal intraocular lenses (MIOL). The origin of the halo in a MIOL is the overlaying of 2 or more images. Using geometrical optics, it can be demonstrated that the diameter of each halo depends on the addition of the lens (ΔP), the base power (P(d)), and the diameter of the IOL that contributes to the «non-focused» focus. In the image plane that corresponds to the distance focus, the halo diameter (δH(d)) is given by: δH(d)=d(pn) ΔP/P(d), where d(pn) is the diameter of the IOL that contributes to the near focus. Analogously, in the near image plane the halo diameter (δH(n)) is: δH(n)=d(pd) ΔP/P(d), where d(pd) is the diameter of the IOL that contributes to the distance focus. Patients perceive halos when they see bright objects over a relatively dark background. In vitro, the halo can be characterized by analyzing the intensity profile of the image of a pinhole that is focused by each of the foci of a MIOL. A comparison has been made between the halos induced by different MIOL of the same base power (20D) in an optical bench. As predicted by theory, the larger the addition of the MIOL, the larger the halo diameter. For large pupils and with MIOL with similar aspheric designs and addition (SN6AD3 vs ZMA00), the apodized MIOL has a smaller halo diameter than a non-apodized one in distance vision, while in near vision the size is very similar, but the relative intensity is higher in the apodized MIOL. When comparing lenses with the same diffractive design, but with different spherical-aspheric base design (SN60D3 vs SN6AD3), the halo in distance vision of the spherical MIOL is larger, while in near vision the spherical IOL induces a smaller halo, but with higher intensity due to the spherical aberration of the distance focus in the near image. In the case of a trifocal-diffractive IOL (AT LISA 839MP) the most noticeable characteristic is the double-halo formation due to the 2 non

On physical scales of dark matter halos

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zemp, Marcel, E-mail: mzemp@pku.edu.cn

2014-09-10

It is common practice to describe formal size and mass scales of dark matter halos as spherical overdensities with respect to an evolving density threshold. Here, we critically investigate the evolutionary effects of several such commonly used definitions and compare them to the halo evolution within fixed physical scales as well as to the evolution of other intrinsic physical properties of dark matter halos. It is shown that, in general, the traditional way of characterizing sizes and masses of halos dramatically overpredicts the degree of evolution in the last 10 Gyr, especially for low-mass halos. This pseudo-evolution leads to themore » illusion of growth even though there are no major changes within fixed physical scales. Such formal size definitions also serve as proxies for the virialized region of a halo in the literature. In general, those spherical overdensity scales do not coincide with the virialized region. A physically more precise nomenclature would be to simply characterize them by their very definition instead of calling such formal size and mass definitions 'virial'. In general, we find a discrepancy between the evolution of the underlying physical structure of dark matter halos seen in cosmological structure formation simulations and pseudo-evolving formal virial quantities. We question the importance of the role of formal virial quantities currently ubiquitously used in descriptions, models, and relations that involve properties of dark matter structures. Concepts and relations based on pseudo-evolving formal virial quantities do not properly reflect the actual evolution of dark matter halos and lead to an inaccurate picture of the physical evolution of our universe.« less

Accurate mass and velocity functions of dark matter haloes

NASA Astrophysics Data System (ADS)

Comparat, Johan; Prada, Francisco; Yepes, Gustavo; Klypin, Anatoly

2017-08-01

N-body cosmological simulations are an essential tool to understand the observed distribution of galaxies. We use the MultiDark simulation suite, run with the Planck cosmological parameters, to revisit the mass and velocity functions. At redshift z = 0, the simulations cover four orders of magnitude in halo mass from ˜1011M⊙ with 8783 874 distinct haloes and 532 533 subhaloes. The total volume used is ˜515 Gpc3, more than eight times larger than in previous studies. We measure and model the halo mass function, its covariance matrix w.r.t halo mass and the large-scale halo bias. With the formalism of the excursion-set mass function, we explicit the tight interconnection between the covariance matrix, bias and halo mass function. We obtain a very accurate (<2 per cent level) model of the distinct halo mass function. We also model the subhalo mass function and its relation to the distinct halo mass function. The set of models obtained provides a complete and precise framework for the description of haloes in the concordance Planck cosmology. Finally, we provide precise analytical fits of the Vmax maximum velocity function up to redshift z < 2.3 to push for the development of halo occupation distribution using Vmax. The data and the analysis code are made publicly available in the Skies and Universes data base.

The global dark halo structure of the Andromeda galaxy

NASA Astrophysics Data System (ADS)

Hayashi, Kohei; Chiba, Masashi

2014-01-01

We set new limits on the global shape of the dark halo in the Andromeda galaxy based on axisymmetric mass models constructed by Hayashi & Chiba (2012). This is motivated by the fact that CDM models predict non-spherical virialized dark halos, which reflect the process of mass assembly in the galactic scale. Based on the application of our models to latest kinematical data of globular clusters and dwarf spheroidal galaxies in the Andromeda halo, we find that the most plausible cases for Andromeda yield not a spherical but a prolate shape for its dark halo. We also find that the prolate dark halo is consistent with theoretical predictions in which the satellites are distributed anisotropically and preferentially located along major axes of their galactic host halos. It is a reflection of the intimate connection between galactic dark matter halos and the cosmic web.

Research Progresses of Halo Streams in the Solar Neighborhood

NASA Astrophysics Data System (ADS)

Xi-long, Liang; Jing-kun, Zhao; Yu-qin, Chen; Gang, Zhao

2018-01-01

The stellar streams originated from the Galactic halo may be detected when they pass by the solar neighborhood, and they still keep some information at their birth times. Thus, the investigation of halo streams in the solar neighborhood is very important for understanding the formation and evolution of our Galaxy. In this paper, the researches of halo streams in the solar neighborhood are briefly reviewed. We have introduced the methods how to detect the halo streams and identify their member stars, summarized the progresses in the observation of member stars of halo streams and in the study of their origins, introduced in detail how to analyze the origins of halo streams in the solar neighborhood by means of numerical simulation and chemical abundance, and finally discussed the prospects of the LAMOST and GAIA in the research of halo streams in the solar neighborhood.

A Rice CPYC-Type Glutaredoxin OsGRX20 in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.

PubMed

Ning, Xi; Sun, Yao; Wang, Changchun; Zhang, Weilin; Sun, Meihao; Hu, Haitao; Liu, Jianzhong; Yang, Ling

2018-01-01

Glutaredoxins (GRXs) belong to the antioxidants involved in the cellular stress responses. In spite of the identification 48 GRX genes in rice genomes, the biological functions of most of them remain unknown. Especially, the biological roles of members of GRX family in disease resistance are still lacking. Our proteomic analysis found that OsGRX20 increased by 2.7-fold after infection by bacterial blight. In this study, we isolated and characterized the full-length nucleotide sequences of the rice OsGRX20 gene, which encodes a GRX family protein with CPFC active site of CPYC-type class. OsGRX20 protein was localized in nucleus and cytosol, and its transcripts were expressed predominantly in leaves. Several stress- and hormone-related motifs putatively acting as regulatory elements were found in the OsGRX20 promoter. Real-time quantitative PCR analysis indicated that OsGRX20 was expressed at a significantly higher level in leaves of a resistant or tolerant rice genotype, Yongjing 50A, than in a sensitive genotype, Xiushui 11, exposed to bacterial blight, methyl viologen, heat, and cold. Its expression could be induced by salt, PEG-6000, 2,4-D, salicylic acid, jasmonic acid, and abscisic acid treatments in Yongjing 50A. Overexpression of OsGRX20 in rice Xiushui 11 significantly enhanced its resistance to bacterial blight attack, and tolerance to methyl viologen and salt stresses. In contrast, interference of OsGRX20 in Yongjing 50A led to increased susceptibility to bacterial blight, methyl viologen and salt stresses. OsGRX20 restrained accumulation of superoxide radicals in aerial tissue during methyl viologen treatment. Consistently, alterations in OsGRX20 expression affect the ascorbate/dehydroascorbate ratio and the abundance of transcripts encoding four reactive oxygen species scavenging enzymes after methyl viologen-induced stress. Our results demonstrate that OsGRX20 functioned as a positive regulator in rice tolerance to multiple stresses, which may be of

A look into the inside of haloes: a characterization of the halo shape as a function of overdensity in the Planck cosmology

NASA Astrophysics Data System (ADS)

Despali, Giulia; Giocoli, Carlo; Bonamigo, Mario; Limousin, Marceau; Tormen, Giuseppe

2017-04-01

In this paper, we study the triaxial properties of dark matter haloes of a wide range of masses extracted from a set of cosmological N-body simulations. We measure the shape at different distances from the halo centre (characterized by different overdensity thresholds), both in three and in two dimensions. We discuss how halo triaxiality increases with mass, redshift and distance from the halo centre. We also examine how the orientations of the different ellipsoids are aligned with each other and what is the gradient in internal shapes for haloes with different virial configurations. Our findings highlight that the internal part of the halo retains memory of the violent formation process keeping the major axis oriented towards the preferential direction of the infalling material while the outer part becomes rounder due to continuous isotropic merging events. This effect is clearly evident in high-mass haloes - which formed more recently - while it is more blurred in low-mass haloes. We present simple distributions that may be used as priors for various mass reconstruction algorithms, operating in different wavelengths, in order to recover a more complex and realistic dark matter distribution of isolated and relaxed systems.

Halo correlations in nonlinear cosmic density fields

NASA Astrophysics Data System (ADS)

Bernardeau, F.; Schaeffer, R.

1999-09-01

The question we address in this paper is the determination of the correlation properties of the dark matter halos appearing in cosmic density fields once they underwent a strongly nonlinear evolution induced by gravitational dynamics. A series of previous works have given indications that kind of non-Gaussian features are induced by nonlinear evolution in term of the high-order correlation functions. Assuming such patterns for the matter field, i.e. that the high-order correlation functions behave as products of two-body correlation functions, we derive the correlation properties of the halos, that are assumed to represent the correlation properties of galaxies or clusters. The hierarchical pattern originally induced by gravity is shown to be conserved for the halos. The strength of their correlations at any order varies, however, but is found to depend only on their internal properties, namely on the parameter x~ m/r(3-gamma ) where m is the mass of the halo, r its size and gamma is the power law index of the two-body correlation function. This internal parameter is seen to be close to the depth of the internal potential well of virialized objects. We were able to derive the explicit form of the generating function of the moments of the halo counts probability distribution function. In particular we show explicitly that, generically, S_P(x)-> P(P-2) in the rare halo limit. Various illustrations of our general results are presented. As a function of the properties of the underlying matter field, we construct the count probabilities for halos and in particular discuss the halo void probability. We evaluate the dependence of the halo mass function on the environment: within clusters, hierarchical clustering implies the higher masses are favored. These properties solely arise from what is a natural bias (ie, naturally induced by gravity) between the observed objects and the unseen matter field, and how it manifests itself depending on which selection effects are

Anthracnose Diseases of Eastern Hardwoods

Treesearch

Frederick H. Berry

1985-01-01

Anthracnose diseases of hardwood trees are widespread throughout the Eastern United States. The most common symptom of these diseases is dead areas or blotches on the leaves. Because of the brown and black, scorched appearance of the leaves, the diseases are sometimes called leaf blight.

Squeezing the halo bispectrum: a test of bias models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dizgah, Azadeh Moradinezhad; Chan, Kwan Chuen; Noreña, Jorge

We study the halo-matter cross bispectrum in the presence of primordial non-Gaussianity of the local type. We restrict ourselves to the squeezed limit, for which the calculation are straightforward, and perform the measurements in the initial conditions of N-body simulations, to mitigate the contamination induced by nonlinear gravitational evolution. Interestingly, the halo-matter cross bispectrum is not trivial even in this simple limit as it is strongly sensitive to the scale-dependence of the quadratic and third-order halo bias. Therefore, it can be used to test biasing prescriptions. We consider three different prescription for halo clustering: excursion set peaks (ESP), local biasmore » and a model in which the halo bias parameters are explicitly derived from a peak-background split. In all cases, the model parameters are fully constrained with statistics other than the cross bispectrum. We measure the cross bispectrum involving one halo fluctuation field and two mass overdensity fields for various halo masses and collapse redshifts. We find that the ESP is in reasonably good agreement with the numerical data, while the other alternatives we consider fail in various cases. This suggests that the scale-dependence of halo bias also is a crucial ingredient to the squeezed limit of the halo bispectrum.« less

Phytohormone priming elevates the accumulation of defense-related gene transcripts and enhances bacterial blight disease resistance in cassava.

PubMed

Yoodee, Sunisa; Kobayashi, Yohko; Songnuan, Wisuwat; Boonchird, Chuenchit; Thitamadee, Siripong; Kobayashi, Issei; Narangajavana, Jarunya

2018-01-01

Cassava bacterial blight (CBB) disease caused by Xanthomonas axonopodis pv. manihotis (Xam) is a severe disease in cassava worldwide. In addition to causing significant cassava yield loss, CBB disease has not been extensively studied, especially in terms of CBB resistance genes. The present research demonstrated the molecular mechanisms underlining the defense response during Xam infection in two cassava cultivars exhibiting different degrees of disease resistance, Huay Bong60 (HB60) and Hanatee (HN). Based on gene expression analysis, ten of twelve putative defense-related genes including, leucine-rich repeat receptor-like kinases (LRR-RLKs), resistance (R), WRKY and pathogenesis-related (PR) genes, were differentially expressed between these two cassava cultivars during Xam infection. The up-regulation of defense-related genes observed in HB60 may be the mechanism required for the reduction of disease severity in the resistant cultivar. Interestingly, priming with salicylic acid (SA) or methyl jasmonate (MeJA) for 24 h before Xam inoculation could enhance the defense response in both cassava cultivars. The disease severity was decreased 10% in the resistant cultivar (HB60) and was remarkably reduced 21% in the susceptible cultivar (HN) by SA/MeJA priming. Priming with Xam inoculation modulated cassava4.1_013417, cassava4.1_030866 and cassava4.1_020555 (highest similarity to MeWRKY59, MePR1 and AtPDF2.2, respectively) expression and led to enhanced resistance of the susceptible cultivar in the second infection. The putative cis-regulatory elements were predicted in an upstream region of these three defense-related genes. The different gene expression levels in these genes between the two cultivars were due to the differences in cis-regulatory elements in their promoter regions. Taken together, our study strongly suggested that the induction of defense-related genes correlated with defense resistance against Xam infection, and exogenous application of SA or Me

HALOE test and evaluation software

NASA Technical Reports Server (NTRS)

Edmonds, W.; Natarajan, S.

1987-01-01

Computer programming, system development and analysis efforts during this contract were carried out in support of the Halogen Occultation Experiment (HALOE) at NASA/Langley. Support in the major areas of data acquisition and monitoring, data reduction and system development are described along with a brief explanation of the HALOE project. Documented listings of major software are located in the appendix.

Disc-halo interactions in ΛCDM

NASA Astrophysics Data System (ADS)

Bauer, Jacob S.; Widrow, Lawrence M.; Erkal, Denis

2018-05-01

We present a new method for embedding a stellar disc in a cosmological dark matter halo and provide a worked example from a Λ cold dark matter zoom-in simulation. The disc is inserted into the halo at a redshift z = 3 as a zero-mass rigid body. Its mass and size are then increased adiabatically while its position, velocity, and orientation are determined from rigid-body dynamics. At z = 1, the rigid disc (RD) is replaced by an N-body disc whose particles sample a three-integral distribution function (DF). The simulation then proceeds to z = 0 with live disc (LD) and halo particles. By comparison, other methods assume one or more of the following: the centre of the RD during the growth phase is pinned to the minimum of the halo potential, the orientation of the RD is fixed, or the live N-body disc is constructed from a two rather than three-integral DF. In general, the presence of a disc makes the halo rounder, more centrally concentrated, and smoother, especially in the innermost regions. We find that methods in which the disc is pinned to the minimum of the halo potential tend to overestimate the amount of adiabatic contraction. Additionally, the effect of the disc on the subhalo distribution appears to be rather insensitive to the disc insertion method. The LD in our simulation develops a bar that is consistent with the bars seen in late-type spiral galaxies. In addition, particles from the disc are launched or `kicked up' to high galactic latitudes.

Halo-free phase contrast microscopy (Conference Presentation)

NASA Astrophysics Data System (ADS)

Nguyen, Tan H.; Kandel, Mikhail E.; Shakir, Haadi M.; Best, Catherine; Do, Minh N.; Popescu, Gabriel

2017-02-01

The phase contrast (PC) method is one of the most impactful developments in the four-century long history of microscopy. It allows for intrinsic, nondestructive contrast of transparent specimens, such as live cells. However, PC is plagued by the halo artifact, a result of insufficient spatial coherence in the illumination field, which limits its applicability. We present a new approach for retrieving halo-free phase contrast microscopy (hfPC) images by upgrading the conventional PC microscope with an external interferometric module, which generates sufficient data for reversing the halo artifact. Measuring four independent intensity images, our approach first measures haloed phase maps of the sample. We solve for the halo-free sample transmission function by using a physical model of the image formation under partial spatial coherence. Using this halo-free sample transmission, we can numerically generate artifact-free PC images. Furthermore, this transmission can be further used to obtain quantitative information about the sample, e.g., the thickness with known refractive indices, dry mass of live cells during their cycles. We tested our hfPC method on various control samples, e.g., beads, pillars and validated its potential for biological investigation by imaging live HeLa cells, red blood cells, and neurons.

The Structure of Dark Matter Halos in Dwarf Galaxies

NASA Astrophysics Data System (ADS)

Burkert, A.

1995-07-01

Recent observations indicate that dark matter halos have flat central density profiles. Cosmological simulations with nonbaryonic dark matter, however, predict self-similar halos with central density cusps. This contradiction has lead to the conclusion that dark matter must be baryonic. Here it is shown that the dark matter halos of dwarf spiral galaxies represent a one-parameter family with self-similar density profiles. The observed global halo parameters are coupled with each other through simple scaling relations which can be explained by the standard cold dark matter model if one assumes that all the halos formed from density fluctuations with the same primordial amplitude. We find that the finite central halo densities correlate with the other global parameters. This result rules out scenarios where the flat halo cores formed subsequently through violent dynamical processes in the baryonic component. These cores instead provide important information on the origin and nature of dark matter in dwarf galaxies.

Subhalo demographics in the Illustris simulation: effects of baryons and halo-to-halo variation

NASA Astrophysics Data System (ADS)

Chua, Kun Ting Eddie; Pillepich, Annalisa; Rodriguez-Gomez, Vicente; Vogelsberger, Mark; Bird, Simeon; Hernquist, Lars

2017-12-01

We study the abundance of subhaloes in the hydrodynamical cosmological simulation Illustris, which includes both baryons and dark matter in a cold dark matter volume 106.5 Mpc a side. We compare Illustris to its dark-matter only (DMO) analogue, Illustris-Dark and quantify the effects of baryonic processes on the demographics of subhaloes in the host mass range 1011-3 × 1014 M⊙. We focus on both the evolved (z = 0) subhalo cumulative mass functions (SHMF) and the statistics of subhaloes ever accreted, i.e. infall SHMF. We quantify the variance in subhalo abundance at fixed host mass and investigate the physical reasons responsible for such scatter. We find that in Illustris, baryonic physics impacts both the infall and z = 0 subhalo abundance by tilting the DMO function and suppressing the abundance of low-mass subhaloes. The breaking of self-similarity in the subhalo abundance at z = 0 is enhanced by the inclusion of baryonic physics. The non-monotonic alteration of the evolved subhalo abundances can be explained by the modification of the concentration-mass relation of Illustris hosts compared to Illustris-Dark. Interestingly, the baryonic implementation in Illustris does not lead to an increase in the halo-to-halo variation compared to Illustris-Dark. In both cases, the normalized intrinsic scatter today is larger for Milky Way-like haloes than for cluster-sized objects. For Milky Way-like haloes, it increases from about eight per cent at infall to about 25 per cent at the current epoch. In both runs, haloes of fixed mass formed later host more subhaloes than early formers.

The Prolate Dark Matter Halo of the Andromeda Galaxy

NASA Astrophysics Data System (ADS)

Hayashi, Kohei; Chiba, Masashi

2014-07-01

We present new limits on the global shape of the dark matter halo in the Andromeda galaxy using and generalizing non-spherical mass models developed by Hayashi & Chiba and compare our results with theoretical predictions of cold dark matter (CDM) models. This is motivated by the fact that CDM models predict non-spherical virialized dark halos, which reflect the process of mass assembly in the galactic scale. Applying our models to the latest kinematic data of globular clusters and dwarf spheroidal galaxies in the Andromeda halo, we find that the most plausible cases for Andromeda yield a prolate shape for its dark halo, irrespective of assumed density profiles. We also find that this prolate dark halo in Andromeda is consistent with theoretical predictions in which the satellites are distributed anisotropically and preferentially located along major axes of their host halos. It is a reflection of the intimate connection between galactic dark matter halos and the cosmic web. Therefore, our result is profound in understanding internal dynamics of halo tracers in Andromeda, such as orbital evolutions of tidal stellar streams, which play important roles in extracting the abundance of CDM subhalos through their dynamical effects on stream structures.

The growth and structure of dark matter haloes

NASA Astrophysics Data System (ADS)

Zhao, D. H.; Mo, H. J.; Jing, Y. P.; Börner, G.

2003-02-01

In this paper, we analyse in detail the mass-accretion histories and structural properties of dark haloes in high-resolution N-body simulations. We model the density distribution in individual haloes using the Navarro-Frenk-White (NFW) profile. For a given halo, there is a tight correlation between its inner-scale radius rs and the mass within it, Ms, for all its main progenitors. Using this correlation, one can predict quite well the structural properties of a dark halo at any time in its history from its mass-accretion history, implying that the structure properties and the mass-accretion history are closely correlated. The predicted growing rate of concentration c with time tends to increase with decreasing mass-accretion rate. The build-up of dark haloes in cold dark matter (CDM) models generally consists of an early phase of fast accretion (where the halo mass Mh increases with time much faster than the expansion rate of the Universe) and a late phase of slow accretion (where Mh increases with time approximately as the expansion rate). These two phases are separated at a time when c~ 4 and the typical binding energy of the halo is approximately equal to that of a singular isothermal sphere with the same circular velocity. Haloes in the two accretion phases show systematically different properties, for example, the circular velocity vh increases rapidly with time in the fast accretion phase but remains almost constant in the slow accretion phase, the inner properties of a halo, such as rs and Ms increase rapidly with time in the fast accretion phase but change only slowly in the slow accretion phase, the inner circular velocity vs is approximately equal to vh in the fast accretion phase but is larger in the slow accretion phase. The potential well associated with a halo is built up mainly in the fast accretion phase, while a large amount of mass can be accreted in the slow accretion phase without changing the potential well significantly. We discuss our results

N-body dark matter haloes with simple hierarchical histories

NASA Astrophysics Data System (ADS)

Jiang, Lilian; Helly, John C.; Cole, Shaun; Frenk, Carlos S.

2014-05-01

We present a new algorithm which groups the subhaloes found in cosmological N-body simulations by structure finders such as SUBFIND into dark matter haloes whose formation histories are strictly hierarchical. One advantage of these `Dhaloes' over the commonly used friends-of-friends (FoF) haloes is that they retain their individual identity in the cases when FoF haloes are artificially merged by tenuous bridges of particles or by an overlap of their outer diffuse haloes. Dhaloes are thus well suited for modelling galaxy formation and their merger trees form the basis of the Durham semi-analytic galaxy formation model, GALFORM. Applying the Dhalo construction to the Λ cold dark matter Millennium II Simulation, we find that approximately 90 per cent of Dhaloes have a one-to-one, bijective match with a corresponding FoF halo. The remaining 10 per cent are typically secondary components of large FoF haloes. Although the mass functions of both types of haloes are similar, the mass of Dhaloes correlates much more tightly with the virial mass, M200, than FoF haloes. Approximately 80 per cent of FoF and bijective and non-bijective Dhaloes are relaxed according to standard criteria. For these relaxed haloes, all three types have similar concentration-M200 relations and, at fixed mass, the concentration distributions are described accurately by log-normal distributions.

The Origin of the Milky Way's Halo Age Distribution

NASA Astrophysics Data System (ADS)

Carollo, Daniela; Tissera, Patricia B.; Beers, Timothy C.; Gudin, Dmitrii; Gibson, Brad K.; Freeman, Ken C.; Monachesi, Antonela

2018-05-01

We present an analysis of the radial age gradients for the stellar halos of five Milky Way (MW) mass-sized systems simulated as part of the Aquarius Project. The halos show a diversity of age trends, reflecting their different assembly histories. Four of the simulated halos possess clear negative age gradients, ranging from approximately ‑7 to ‑19 Myr kpc‑1, shallower than those determined by recent observational studies of the Milky Way’s stellar halo. However, when restricting the analysis to the accreted component alone, all of the stellar halos exhibit a steeper negative age gradient with values ranging from ‑8 to ‑32 Myr kpc‑1, closer to those observed in the Galaxy. Two of the accretion-dominated simulated halos show a large concentration of old stars in the center, in agreement with the Ancient Chronographic Sphere reported observationally. The stellar halo that best reproduces the current observed characteristics of the age distributions of the Galaxy is that formed principally by the accretion of small satellite galaxies. Our findings suggest that the hierarchical clustering scenario can reproduce the MW’s halo age distribution if the stellar halo was assembled from accretion and the disruption of satellite galaxies with dynamical masses less than ∼109.5 M ⊙, and a minimal in situ contribution.

Benomyl Controls Phomopsis Blight on Arizona Cypress in a Nursery

Treesearch

W. B. Smyly; T. H. Filer

1973-01-01

In north-central Mississippi, 0.5 lb/acre of active benomyl controlled blight caused by Phomopsis juniperovora on first-year nursery seedlings of Cupressus arizonica; no phytotoxicity was observed. Other non-mercuric chemicals did not give control at rates tested.

Interactions between Head Blight Pathogens: Consequences for Disease Development and Toxin Production in Wheat Spikes

PubMed Central

Siou, Dorothée; Gélisse, Sandrine; Laval, Valérie; Elbelt, Sonia; Repinçay, Cédric; Bourdat-Deschamps, Marjolaine; Lannou, Christian

2014-01-01

Head blight (HB) is one of the most damaging diseases on wheat, inducing significant yield losses and toxin accumulation in grains. Fungal pathogens responsible for HB include the genus Microdochium, with two species, and the toxin producer genus Fusarium, with several species. Field studies and surveys show that two or more species can coexist within a same field and coinfect the same plant or the same spike. In the current study, we investigated how the concomitant presence of F. graminearum and another of the HB complex species influences the spike colonization and the toxin production by the fungi. To study these interactions, 17 well-characterized isolates representing five species were inoculated alone or in pairs on wheat spikes in greenhouse and field experiments. The fungal DNA in the grains was estimated by quantitative PCR and toxin contents (deoxynivalenol and nivalenol) by ultraperformance liquid chromatography-UV detection-tandem mass spectrometry. The responses of the different isolates to the presence of a competitor were variable and isolate specific more than species specific. The development of the most aggressive isolates was either unchanged or a slightly increased, while the development of the less aggressive isolates was reduced. The main outcome of the study was that no trend of increased toxin production was observed in coinoculations compared to single inoculations. On the contrary, the amount of toxin produced was often lower than expected in coinoculations. We thus conclude against the hypothesis that the co-occurrence of several HB-causing species in the same field might aggravate the risk linked to fusarium toxins in wheat production. PMID:25416772

Role of temperature and free moisture in onion flower blight. [Botrytis squamosa; Botrytis cinerea; and Botrytis allii

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ramsey, G.R.; Lorbeer, J.W.

1986-06-01

The cardinal temperatures at which onion umbels were blighted (after inoculation when two-thirds of the florets were open) with Botrytis squamosa, B. cinerea, and B. allii (isolated from blighted onion florets) were near 9, 21, and 27 C for B. squamosa, near 12, 21, and 30 C for B. cinerea, and near 9, 24, and 30 C for B. allii. The cardinal temperatures for mycelial growth (potato-dextrose agar) of B. squamosa, B. cinerea, and B. allii were near 5, 22, and 30 C for each fungus. The cardinal temperatures for conidial germination (on purified water agar) were near 6, 15,more » and 30 C for B. squamosa; 3, 18, and 33 C for B. cinerea; and 6, 24, and 33 C for B. allii. When the duration of free moisture on umbels after inoculation with the three pathogens was increased from 0 to 96 hr. the percentages of unopened florets, open florets, and immature seed capsules blighted at 21 C were increased significantly. Free moisture durations of 12-24, 6-12, and 6-12 hr were necessary for blighting of unopen florets, open florets, and immature seed capsules, respectively, by each pathogen at 21 C. A positive correlation between the amount of July rainfall and the natural incidence of onion flower blight was observed in Orange County, New York, from 1976 to 1981. 10 references, 2 figures, 1 table.« less

Engineering fire blight resistance into the apple cultivar 'Gala' using the FB_MR5 CC-NBS-LRR resistance gene of Malus × robusta 5.

PubMed

Broggini, Giovanni A L; Wöhner, Thomas; Fahrentrapp, Johannes; Kost, Thomas D; Flachowsky, Henryk; Peil, Andreas; Hanke, Maria-Viola; Richter, Klaus; Patocchi, Andrea; Gessler, Cesare

2014-08-01

The fire blight susceptible apple cultivar Malus × domestica Borkh. cv. 'Gala' was transformed with the candidate fire blight resistance gene FB_MR5 originating from the crab apple accession Malus × robusta 5 (Mr5). A total of five different transgenic lines were obtained. All transgenic lines were shown to be stably transformed and originate from different transgenic events. The transgenic lines express the FB_MR5 either driven by the constitutive CaMV 35S promoter and the ocs terminator or by its native promoter and terminator sequences. Phenotyping experiments were performed with Mr5-virulent and Mr5-avirulent strains of Erwinia amylovora, the causal agent of fire blight. Significantly less disease symptoms were detected on transgenic lines after inoculation with two different Mr5-avirulent E. amylovora strains, while significantly more shoot necrosis was observed after inoculation with the Mr5-virulent mutant strain ZYRKD3_1. The results of these experiments demonstrated the ability of a single gene isolated from the native gene pool of apple to protect a susceptible cultivar from fire blight. Furthermore, this gene is confirmed to be the resistance determinant of Mr5 as the transformed lines undergo the same gene-for-gene interaction in the host-pathogen relationship Mr5-E. amylovora. © 2014 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

The halo model in a massive neutrino cosmology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Massara, Elena; Villaescusa-Navarro, Francisco; Viel, Matteo, E-mail: emassara@sissa.it, E-mail: villaescusa@oats.inaf.it, E-mail: viel@oats.inaf.it

2014-12-01

We provide a quantitative analysis of the halo model in the context of massive neutrino cosmologies. We discuss all the ingredients necessary to model the non-linear matter and cold dark matter power spectra and compare with the results of N-body simulations that incorporate massive neutrinos. Our neutrino halo model is able to capture the non-linear behavior of matter clustering with a ∼20% accuracy up to very non-linear scales of k = 10 h/Mpc (which would be affected by baryon physics). The largest discrepancies arise in the range k = 0.5 – 1 h/Mpc where the 1-halo and 2-halo terms are comparable and are present also inmore » a massless neutrino cosmology. However, at scales k < 0.2 h/Mpc our neutrino halo model agrees with the results of N-body simulations at the level of 8% for total neutrino masses of < 0.3 eV. We also model the neutrino non-linear density field as a sum of a linear and clustered component and predict the neutrino power spectrum and the cold dark matter-neutrino cross-power spectrum up to k = 1 h/Mpc with ∼30% accuracy. For masses below 0.15 eV the neutrino halo model captures the neutrino induced suppression, casted in terms of matter power ratios between massive and massless scenarios, with a 2% agreement with the results of N-body/neutrino simulations. Finally, we provide a simple application of the halo model: the computation of the clustering of galaxies, in massless and massive neutrinos cosmologies, using a simple Halo Occupation Distribution scheme and our halo model extension.« less

Isobar analog states (IAS), double isobar analog states (DIAS), configuration states (CS), and double configuration states (DCS) in halo nuclei. Halo isomers

NASA Astrophysics Data System (ADS)

Izosimov, I. N.

2015-10-01

It has been shown that IAS, DIAS, CS, and DCS can simultaneously have n-n, n-p, and p-p halo components in their wave functions. Differences in halo structure of the excited and ground states can result in the formation of isomers (halo-isomers). Both the Borromean and tango halo types can be observed for n-p configurations of atomic nuclei. The structure of the ground and excited states with different isospin quantum number in halo like nuclei is discussed. B(Mλ) and B(Eλ) for γ-transitions in 6,7,8Li, 8,9,10Be, 8,10,11B, 10,11,12,13,14C, 13,14,15,16,17N, 15,16,17,19O, and 17F are analyzed. Special attention is given to nuclei whose ground state does not exhibit halo structure but the excited state may have one.

An improved catalog of halo wide binary candidates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Allen, Christine; Monroy-Rodríguez, Miguel A., E-mail: chris@astro.unam.mx

2014-08-01

We present an improved catalog of halo wide binaries compiled from an extensive literature search. Most of our binaries stem from the common proper motion binary catalogs by Allen et al. and Chanamé and Gould, but we have also included binaries from the lists of Ryan and Zapatero-Osorio and Martín. All binaries were carefully checked and their distances and systemic radial velocities are included when available. Probable membership to the halo population was tested by means of reduced proper motion diagrams for 251 candidate halo binaries. After eliminating obvious disk binaries, we ended up with 211 probable halo binaries, 150more » of which have radial velocities available. We compute galactic orbits for these 150 binaries and calculate the time they spend within the galactic disk. Considering the full sample of 251 candidate halo binaries as well as several subsamples, we find that the distribution of angular separations (or expected major semiaxes) follows a power law f(a) ∼ a {sup –1} (Oepik's relation) up to different limits. For the 50 most disk-like binaries, those that spend their entire lives within z = ±500 pc, this limit is found to be 19,000 AU (0.09 pc), while for the 50 most halo-like binaries, those that spend on average only 18% of their lives within z = ±500 pc, the limit is 63,000 AU (0.31 pc). In a companion paper, we employ this catalog to establish limits on the masses of the halo massive perturbers (massive compact halo objects).« less

Evidence that the Ceratobasidium-like white-thread blight and black rot fungal pathogens from persimmon and tea crops in the Brazilian Atlantic Forest agroecosystem are two distinct phylospecies.

PubMed

Ceresini, Paulo C; Costa-Souza, Elaine; Zala, Marcello; Furtado, Edson L; Souza, Nilton L

2012-04-01

The white-thread blight and black rot (WTBR) caused by basidiomycetous fungi of the genus Ceratobasidium is emerging as an important plant disease in Brazil, particularly for crop species in the Ericales such as persimmon (Diospyros kaki) and tea (Camellia sinensis). However, the species identity of the fungal pathogen associated with either of these hosts is still unclear. In this work, we used sequence variation in the internal transcribed spacer regions, including the 5.8S coding region of rDNA (ITS-5.8S rDNA), to determine the phylogenetic placement of the local white-thread-blight-associated populations of Ceratobasidium sp. from persimmon and tea, in relation to Ceratobasidium species already described world-wide. The two sister populations of Ceratobasidium sp. from persimmon and tea in the Brazilian Atlantic Forest agroecosystem most likely represent distinct species within Ceratobasidium and are also distinct from C. noxium, the etiological agent of the first description of white-thread blight disease that was reported on coffee in India. The intraspecific variation for the two Ceratobasidium sp. populations was also analyzed using three mitochondrial genes (ATP6, nad1 and nad2). As reported for other fungi, variation in nuclear and mitochondrial DNA was incongruent. Despite distinct variability in the ITS-rDNA region these two populations shared similar mitochondrial DNA haplotypes.

Evidence that the Ceratobasidium-like white-thread blight and black rot fungal pathogens from persimmon and tea crops in the Brazilian Atlantic Forest agroecosystem are two distinct phylospecies

PubMed Central

Ceresini, Paulo C.; Costa-Souza, Elaine; Zala, Marcello; Furtado, Edson L.; Souza, Nilton L.

2012-01-01

The white-thread blight and black rot (WTBR) caused by basidiomycetous fungi of the genus Ceratobasidium is emerging as an important plant disease in Brazil, particularly for crop species in the Ericales such as persimmon (Diospyros kaki) and tea (Camellia sinensis). However, the species identity of the fungal pathogen associated with either of these hosts is still unclear. In this work, we used sequence variation in the internal transcribed spacer regions, including the 5.8S coding region of rDNA (ITS-5.8S rDNA), to determine the phylogenetic placement of the local white-thread-blight-associated populations of Ceratobasidium sp. from persimmon and tea, in relation to Ceratobasidium species already described world-wide. The two sister populations of Ceratobasidium sp. from persimmon and tea in the Brazilian Atlantic Forest agroecosystem most likely represent distinct species within Ceratobasidium and are also distinct from C. noxium, the etiological agent of the first description of white-thread blight disease that was reported on coffee in India. The intraspecific variation for the two Ceratobasidium sp. populations was also analyzed using three mitochondrial genes (ATP6, nad1 and nad2). As reported for other fungi, variation in nuclear and mitochondrial DNA was incongruent. Despite distinct variability in the ITS-rDNA region these two populations shared similar mitochondrial DNA haplotypes. PMID:22888299

Integrated Control of Fire Blight with Bacterial Antagonists and Oxytetracycline

USDA-ARS?s Scientific Manuscript database

In the Pacific Northwest of the United States, the antibiotic streptomycin provided excellent control of fire blight until resistant isolates of Erwinia amylovora were prevalent. Oxytetracycline (Mycoshield) is now sprayed as an alternative antibiotic. We found that the duration of inhibitory acti...

The Phase-space Density Distribution of Dark Matter Halos

NASA Astrophysics Data System (ADS)

Williams, Liliya L. R.; Austin, Crystal; Barnes, Eric; Babul, Arif; Dalcanton, Julianne

2004-12-01

High resolution N-body simulations have all but converged on a common empirical form for the shape of the density profiles of halos, but the full understanding of the underlying physics of halo formation has eluded them so far. We investigate the formation and structure of dark matter halos using analytical and semi-analytical techniques. Our halos are formed via an extended secondary infall model (ESIM); they contain secondary perturbations and hence random tangential and ra- dial motions which affect the halo’s evolution at it undergoes shell-crossing and virialization. Even though the density profiles of NFW and ESIM halos are different their phase-space density distributions are the same: ρ σ3 ∝ r α , with α 1 875 over 3 decades in radius. We use two approaches to try to explain this “universal” slope: (1) The Jeans equation analysis yields many insights, however, does not answer why α 1 875. (2) The secondary infall model of the 1960’s £ ¤ and 1970’s, augmented by “thermal motions” of particles does predict that halos should have α 1 875. However, this relies on assumptions of spherical symmetry and slow accretion. While £ ¤ for ESIM halos these assumptions are justified, they most certainly break down for simulated halos which forms hierarchically. We speculate that our argument may apply to an “on-average” formation scenario of halos within merger-driven numerical simulations, and thereby explain why α 1 875 for NFW halos. Thus, ρ σ3 ∝ r 1 875 may be a generic feature of violent relaxation.

Bimodal Formation Time Distribution for Infall Dark Matter Halos

NASA Astrophysics Data System (ADS)

Shi, Jingjing; Wang, Huiyuan; Mo, H. J.; Xie, Lizhi; Wang, Xiaoyu; Lapi, Andrea; Sheth, Ravi K.

2018-04-01

We use a 200 {h}-1 {Mpc} a-side N-body simulation to study the mass accretion history (MAH) of dark matter halos to be accreted by larger halos, which we call infall halos. We define a quantity {a}nf}\\equiv (1+{z}{{f}})/(1+{z}peak}) to characterize the MAH of infall halos, where {z}peak} and {z}{{f}} are the accretion and formation redshifts, respectively. We find that, at given {z}peak}, their MAH is bimodal. Infall halos are dominated by a young population at high redshift and by an old population at low redshift. For the young population, the {a}nf} distribution is narrow and peaks at about 1.2, independent of {z}peak}, while for the old population, the peak position and width of the {a}nf} distribution both increase with decreasing {z}peak} and are both larger than those of the young population. This bimodal distribution is found to be closely connected to the two phases in the MAHs of halos. While members of the young population are still in the fast accretion phase at z peak, those of the old population have already entered the slow accretion phase at {z}peak}. This bimodal distribution is not found for the whole halo population, nor is it seen in halo merger trees generated with the extended Press–Schechter formalism. The infall halo population at {z}peak} are, on average, younger than the whole halo population of similar masses identified at the same redshift. We discuss the implications of our findings in connection to the bimodal color distribution of observed galaxies and to the link between central and satellite galaxies.

What sets the central structure of dark matter haloes?

NASA Astrophysics Data System (ADS)

Ogiya, Go; Hahn, Oliver

2018-02-01

Dark matter (DM) haloes forming near the thermal cut-off scale of the density perturbations are unique, since they are the smallest objects and form through monolithic gravitational collapse, while larger haloes contrastingly have experienced mergers. While standard cold dark matter (CDM) simulations readily produce haloes that follow the universal Navarro-Frenk-White (NFW) density profile with an inner slope, ρ ∝ r-α, with α = 1, recent simulations have found that when the free-streaming cut-off expected for the CDM model is resolved, the resulting haloes follow nearly power-law density profiles of α ∼ 1.5. In this paper, we study the formation of density cusps in haloes using idealized N-body simulations of the collapse of proto-haloes. When the proto-halo profile is initially cored due to particle free-streaming at high redshift, we universally find ∼r-1.5 profiles irrespective of the proto-halo profile slope outside the core and large-scale non-spherical perturbations. Quite in contrast, when the proto-halo has a power-law profile, then we obtain profiles compatible with the NFW shape when the density slope of the proto-halo patch is shallower than a critical value, αini ∼ 0.3, while the final slope can be steeper for αini ≳ 0.3. We further demonstrate that the r-1.5 profiles are sensitive to small-scale noise, which gradually drives them towards an inner slope of -1, where they become resilient to such perturbations. We demonstrate that the r-1.5 solutions are in hydrostatic equilibrium, largely consistent with a simple analytic model, and provide arguments that angular momentum appears to determine the inner slope.

A Universal Angular Momentum Profile for Dark Matter Halos

NASA Astrophysics Data System (ADS)

Liao, Shihong; Chen, Jianxiong; Chu, M.-C.

2017-07-01

The angular momentum distribution in dark matter halos and galaxies is a key ingredient in understanding their formation. Specifically, the internal distribution of angular momenta is closely related to the formation of disk galaxies. In this article, we use halos identified from a high-resolution simulation, the Bolshoi simulation, to study the spatial distribution of specific angular momenta, j(r,θ ). We show that by stacking halos with similar masses to increase the signal-to-noise ratio, the profile can be fitted as a simple function, j{(r,θ )={j}s{\\sin }2{(θ /{θ }s)(r/{r}s)}2/(1+r/{r}s)}4, with three free parameters, {j}s,{r}s, and {θ }s. Specifically, j s correlates with the halo mass M vir as {j}s\\propto {M}{vir}2/3, r s has a weak dependence on the halo mass as {r}s\\propto {M}{vir}0.040, and {θ }s is independent of M vir. This profile agrees with that from a rigid shell model, though its origin is unclear. Our universal specific angular momentum profile j(r,θ ) is useful in modeling the angular momenta of halos. Furthermore, by using an empirical stellar mass-halo mass relation, we can infer the average angular momentum distribution of a dark matter halo. The specific angular momentum-stellar mass relation within a halo computed from our profile is shown to share a similar shape as that from the observed disk galaxies.

Semi-empirical catalog of early-type galaxy-halo systems: dark matter density profiles, halo contraction and dark matter annihilation strength

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chae, Kyu-Hyun; Kravtsov, Andrey V.; Frieman, Joshua A.

With Sloan Digital Sky Survey galaxy data and halo data from up-to-date N-body simulations within the ΛCDM framework we construct a semi-empirical catalog (SEC) of early-type galaxy-halo systems by making a self-consistent bivariate statistical match of stellar mass (M{sub *}) and velocity dispersion (σ) with halo virial mass (M{sub vir}) as demonstrated here for the first time. We then assign stellar mass profile and velocity dispersion profile parameters to each system in the SEC using their observed correlations with M{sub *} and σ. Simultaneously, we solve for dark matter density profile of each halo using the spherical Jeans equation. Themore » resulting dark matter density profiles deviate in general from the dissipationless profile of Navarro-Frenk-White or Einasto and their mean inner density slope and concentration vary systematically with M{sub vir}. Statistical tests of the distribution of profiles at fixed M{sub vir} rule out the null hypothesis that it follows the distribution predicted by dissipationless N-body simulations for M{sub vir}∼<10{sup 13.5} {sup –} {sup 14.5} M{sub s}un. These dark matter profiles imply that dark matter density is, on average, enhanced significantly in the inner region of halos with M{sub vir}∼<10{sup 13.5} {sup –} {sup 14.5} M{sub s}un supporting halo contraction. The main characteristics of halo contraction are: (1) the mean dark matter density within the effective radius has increased by a factor varying systematically up to ≈ 3–4 at M{sub vir} = 10{sup 12} M{sub s}un, and (2) the inner density slope has a mean of (α) ≈ 1.3 with ρ{sub dm}(r)∝r{sup −α} and a halo-to-halo rms scatter of rms(α) ∼ 0.4–0.5 for 10{sup 12} M{sub s}un∼« less

Halo abundance matching: accuracy and conditions for numerical convergence

NASA Astrophysics Data System (ADS)

Klypin, Anatoly; Prada, Francisco; Yepes, Gustavo; Heß, Steffen; Gottlöber, Stefan

2015-03-01

Accurate predictions of the abundance and clustering of dark matter haloes play a key role in testing the standard cosmological model. Here, we investigate the accuracy of one of the leading methods of connecting the simulated dark matter haloes with observed galaxies- the halo abundance matching (HAM) technique. We show how to choose the optimal values of the mass and force resolution in large volume N-body simulations so that they provide accurate estimates for correlation functions and circular velocities for haloes and their subhaloes - crucial ingredients of the HAM method. At the 10 per cent accuracy, results converge for ˜50 particles for haloes and ˜150 particles for progenitors of subhaloes. In order to achieve this level of accuracy a number of conditions should be satisfied. The force resolution for the smallest resolved (sub)haloes should be in the range (0.1-0.3)rs, where rs is the scale radius of (sub)haloes. The number of particles for progenitors of subhaloes should be ˜150. We also demonstrate that the two-body scattering plays a minor role for the accuracy of N-body simulations thanks to the relatively small number of crossing-times of dark matter in haloes, and the limited force resolution of cosmological simulations.

The prolate dark matter halo of the Andromeda galaxy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hayashi, Kohei; Chiba, Masashi, E-mail: k.hayasi@astr.tohoku.ac.jp, E-mail: chiba@astr.tohoku.ac.jp

We present new limits on the global shape of the dark matter halo in the Andromeda galaxy using and generalizing non-spherical mass models developed by Hayashi and Chiba and compare our results with theoretical predictions of cold dark matter (CDM) models. This is motivated by the fact that CDM models predict non-spherical virialized dark halos, which reflect the process of mass assembly in the galactic scale. Applying our models to the latest kinematic data of globular clusters and dwarf spheroidal galaxies in the Andromeda halo, we find that the most plausible cases for Andromeda yield a prolate shape for itsmore » dark halo, irrespective of assumed density profiles. We also find that this prolate dark halo in Andromeda is consistent with theoretical predictions in which the satellites are distributed anisotropically and preferentially located along major axes of their host halos. It is a reflection of the intimate connection between galactic dark matter halos and the cosmic web. Therefore, our result is profound in understanding internal dynamics of halo tracers in Andromeda, such as orbital evolutions of tidal stellar streams, which play important roles in extracting the abundance of CDM subhalos through their dynamical effects on stream structures.« less

Length dependence of a halo orthosis on cervical immobilization.

PubMed

Triggs, K J; Ballock, R T; Byrne, T; Garfin, S R

1993-02-01

This study was designed to observe the length dependence of a well-molded fiberglass body cast attached to a halo on motion restriction in an unstable cadaveric cervical spine. Also, by using this technique, comparison between the immobilization provided by a body cast and that provided by a standard premolded polyethylene halo vest could be made. Extreme cervical instability was created on adult cadavers. A halo ring was applied and then attached to a fiberglass body cast or to a polyethylene halo vest. Sequential lateral cervical radiographs were obtained during maximum flexion as the body cast was shortened from the level of the iliac crests to the level of the xiphoid process. Radiographic motion was also assessed within the polyethylene halo vest. Results revealed minimal motion difference as the fiberglass body cast was sequentially shortened. In contrast, motions within the polyethylene halo vest were variable. These results suggest that cervical immobilization may be relatively independent of support structure length and that immobilization can be maintained by a well-fitting halo vest extending to the level of the xiphoid process.

Optimal linear reconstruction of dark matter from halo catalogues

DOE PAGES

Cai, Yan -Chuan; Bernstein, Gary; Sheth, Ravi K.

2011-04-01

The dark matter lumps (or "halos") that contain galaxies have locations in the Universe that are to some extent random with respect to the overall matter distributions. We investigate how best to estimate the total matter distribution from the locations of the halos. We derive the weight function w(M) to apply to dark-matter haloes that minimizes the stochasticity between the weighted halo distribution and its underlying mass density field. The optimal w(M) depends on the range of masses of halos being used. While the standard biased-Poisson model of the halo distribution predicts that bias weighting is optimal, the simple factmore » that the mass is comprised of haloes implies that the optimal w(M) will be a mixture of mass-weighting and bias-weighting. In N-body simulations, the Poisson estimator is up to 15× noisier than the optimal. Optimal weighting could make cosmological tests based on the matter power spectrum or cross-correlations much more powerful and/or cost effective.« less

Minimizing the stochasticity of halos in large-scale structure surveys

NASA Astrophysics Data System (ADS)

Hamaus, Nico; Seljak, Uroš; Desjacques, Vincent; Smith, Robert E.; Baldauf, Tobias

2010-08-01

In recent work (Seljak, Hamaus, and Desjacques 2009) it was found that weighting central halo galaxies by halo mass can significantly suppress their stochasticity relative to the dark matter, well below the Poisson model expectation. This is useful for constraining relations between galaxies and the dark matter, such as the galaxy bias, especially in situations where sampling variance errors can be eliminated. In this paper we extend this study with the goal of finding the optimal mass-dependent halo weighting. We use N-body simulations to perform a general analysis of halo stochasticity and its dependence on halo mass. We investigate the stochasticity matrix, defined as Cij≡⟨(δi-biδm)(δj-bjδm)⟩, where δm is the dark matter overdensity in Fourier space, δi the halo overdensity of the i-th halo mass bin, and bi the corresponding halo bias. In contrast to the Poisson model predictions we detect nonvanishing correlations between different mass bins. We also find the diagonal terms to be sub-Poissonian for the highest-mass halos. The diagonalization of this matrix results in one large and one low eigenvalue, with the remaining eigenvalues close to the Poisson prediction 1/n¯, where n¯ is the mean halo number density. The eigenmode with the lowest eigenvalue contains most of the information and the corresponding eigenvector provides an optimal weighting function to minimize the stochasticity between halos and dark matter. We find this optimal weighting function to match linear mass weighting at high masses, while at the low-mass end the weights approach a constant whose value depends on the low-mass cut in the halo mass function. This weighting further suppresses the stochasticity as compared to the previously explored mass weighting. Finally, we employ the halo model to derive the stochasticity matrix and the scale-dependent bias from an analytical perspective. It is remarkably successful in reproducing our numerical results and predicts that the

XopN-T3SS effector of Xanthomonas axonopodis pv. punicae localizes to the plasma membrane and modulates ROS accumulation events during blight pathogenesis in pomegranate.

PubMed

Kumar, Rishikesh; Soni, Madhvi; Mondal, Kalyan K

2016-12-01

Bacterial blight caused by Xanthomonas axonopodis pv. punicae (Xap) is a major disease of pomegranate. Xap secretes effector proteins via type III secretion system (T3SS) to suppress pathogen-associated molecular pattern (PAMP)-triggered plant immunity (PTI). Previously we reported that XopN, a conserved effector of Xap, modulate in planta bacterial growth, and blight disease. In continuation to that here we report the deletion of XopN from Xap caused higher accumulation of reactive oxygen species (ROS) including H 2 O 2 and O 2 - . We quantitatively assessed the higher accumulation of H 2 O 2 in pomegranate leaves infiltrated with Xap ΔxopN compared to Xap wild-type. We analysed that 1.5 to 3.3 fold increase in transcript expression of ROS and flg22-inducible genes, namely FRK1, GST1, WRKY29, PR1, PR2 and PR5 in Arabidopsis when challenged with Xap ΔxopN; contrary, the up-regulation of all the genes were compromised when challenged with either Xap wild-type or Xap ΔxopN+xopN. Further, we demonstrated the plasma-membrane based localization of XopN protein both in its natural and experimental hosts. All together, the present study suggested that XopN-T3SS effector of Xap gets localized in the plasma membrane and suppresses ROS-mediated early defense responses during blight pathogenesis in pomegranate. Copyright © 2016 Elsevier GmbH. All rights reserved.

Green tissue-specific co-expression of chitinase and oxalate oxidase 4 genes in rice for enhanced resistance against sheath blight.

PubMed

Karmakar, Subhasis; Molla, Kutubuddin Ali; Chanda, Palas K; Sarkar, Sailendra Nath; Datta, Swapan K; Datta, Karabi

2016-01-01

Green tissue-specific simultaneous overexpression of two defense-related genes ( OsCHI11 & OsOXO4 ) in rice leads to significant resistance against sheath blight pathogen ( R. solani ) without distressing any agronomically important traits. Overexpressing two defense-related genes (OsOXO4 and OsCHI11) cloned from rice is effective at enhancing resistance against sheath blight caused by Rhizoctonia solani. These genes were expressed under the control of two different green tissue-specific promoters, viz. maize phosphoenolpyruvate carboxylase gene promoter, PEPC, and rice cis-acting 544-bp DNA element, immediately upstream of the D54O translational start site, P D54O-544 . Putative T0 transgenic rice plants were screened by PCR and integration of genes was confirmed by Southern hybridization of progeny (T1) rice plants. Successful expression of OsOXO4 and OsCHI11 in all tested plants was confirmed. Expression of PR genes increased significantly following pathogen infection in overexpressing transgenic plants. Following infection, transgenic plants exhibited elevated hydrogen peroxide levels, significant changes in activity of ROS scavenging enzymes and reduced membrane damage when compared to their wild-type counterpart. In a Rhizoctonia solani toxin assay, a detached leaf inoculation test and an in vivo plant bioassay, transgenic plants showed a significant reduction in disease symptoms in comparison to non-transgenic control plants. This is the first report of overexpression of two different PR genes driven by two green tissue-specific promoters providing enhanced sheath blight resistance in transgenic rice.

Convergence properties of halo merger trees; halo and substructure merger rates across cosmic history

NASA Astrophysics Data System (ADS)

Poole, Gregory B.; Mutch, Simon J.; Croton, Darren J.; Wyithe, Stuart

2017-12-01

We introduce GBPTREES: an algorithm for constructing merger trees from cosmological simulations, designed to identify and correct for pathological cases introduced by errors or ambiguities in the halo finding process. GBPTREES is built upon a halo matching method utilizing pseudo-radial moments constructed from radially sorted particle ID lists (no other information is required) and a scheme for classifying merger tree pathologies from networks of matches made to-and-from haloes across snapshots ranging forward-and-backward in time. Focusing on SUBFIND catalogues for this work, a sweep of parameters influencing our merger tree construction yields the optimal snapshot cadence and scanning range required for converged results. Pathologies proliferate when snapshots are spaced by ≲0.128 dynamical times; conveniently similar to that needed for convergence of semi-analytical modelling, as established by Benson et al. Total merger counts are converged at the level of ∼5 per cent for friends-of-friends (FoF) haloes of size np ≳ 75 across a factor of 512 in mass resolution, but substructure rates converge more slowly with mass resolution, reaching convergence of ∼10 per cent for np ≳ 100 and particle mass mp ≲ 109 M⊙. We present analytic fits to FoF and substructure merger rates across nearly all observed galactic history (z ≤ 8.5). While we find good agreement with the results presented by Fakhouri et al. for FoF haloes, a slightly flatter dependence on merger ratio and increased major merger rates are found, reducing previously reported discrepancies with extended Press-Schechter estimates. When appropriately defined, substructure merger rates show a similar mass ratio dependence as FoF rates, but with stronger mass and redshift dependencies for their normalization.

Isobar analog states (IAS), double isobar analog states (DIAS), configuration states (CS), and double configuration states (DCS) in halo nuclei. Halo isomers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Izosimov, I. N., E-mail: izosimov@jinr.ru

2015-10-15

It has been shown that IAS, DIAS, CS, and DCS can simultaneously have n-n, n-p, and p-p halo components in their wave functions. Differences in halo structure of the excited and ground states can result in the formation of isomers (halo-isomers). Both the Borromean and tango halo types can be observed for n-p configurations of atomic nuclei. The structure of the ground and excited states with different isospin quantum number in halo like nuclei is discussed. B(Mλ) and B(Eλ) for γ-transitions in {sup 6,7,8}Li, {sup 8,9,10}Be, {sup 8,10,11}B, {sup 10,11,12,13,14}C, {sup 13,14,15,16,17}N, {sup 15,16,17,19}O, and {sup 17}F are analyzed. Specialmore » attention is given to nuclei whose ground state does not exhibit halo structure but the excited state may have one.« less

Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1

PubMed Central

Smits, Theo H. M.; Rezzonico, Fabio; Kamber, Tim; Blom, Jochen; Goesmann, Alexander; Ishimaru, Carol A.; Frey, Jürg E.; Stockwell, Virginia O.; Duffy, Brion

2011-01-01

Background Pantoea vagans is a commercialized biological control agent used against the pome fruit bacterial disease fire blight, caused by Erwinia amylovora. Compared to other biocontrol agents, relatively little is currently known regarding Pantoea genetics. Better understanding of antagonist mechanisms of action and ecological fitness is critical to improving efficacy. Principal Findings Genome analysis indicated two major factors contribute to biocontrol activity: competition for limiting substrates and antibacterial metabolite production. Pathways for utilization of a broad diversity of sugars and acquisition of iron were identified. Metabolism of sorbitol by P. vagans C9-1 may be a major metabolic feature in biocontrol of fire blight. Biosynthetic genes for the antibacterial peptide pantocin A were found on a chromosomal 28-kb genomic island, and for dapdiamide E on the plasmid pPag2. There was no evidence of potential virulence factors that could enable an animal or phytopathogenic lifestyle and no indication of any genetic-based biosafety risk in the antagonist. Conclusions Identifying key determinants contributing to disease suppression allows the development of procedures to follow their expression in planta and the genome sequence contributes to rationale risk assessment regarding the use of the biocontrol strain in agricultural systems. PMID:21789243

THE HALO OCCUPATION DISTRIBUTION OF SDSS QUASARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Richardson, Jonathan; Chatterjee, Suchetana; Nagai, Daisuke

2012-08-10

We present an estimate of the projected two-point correlation function (2PCF) of quasars in the Sloan Digital Sky Survey (SDSS) over the full range of one- and two-halo scales, 0.02 h{sup -1} Mpc < r{sub p} < 120 h{sup -1} Mpc. This was achieved by combining data from SDSS DR7 on large scales and Hennawi et al. (with appropriate statistical corrections) on small scales. Our combined clustering sample is the largest spectroscopic quasar clustering sample to date, containing {approx}48, 000 quasars in the redshift range 0.4 {approx}< z {approx}< 2.5 with median redshift 1.4. We interpret these precise 2PCF measurementsmore » within the halo occupation distribution (HOD) framework and constrain the occupation functions of central and satellite quasars in dark matter halos. In order to explain the small-scale clustering, the HOD modeling requires that a small fraction of z {approx} 1.4 quasars, f{sub sat} = (7.4 {+-} 1.4) Multiplication-Sign 10{sup -4}, be satellites in dark matter halos. At z {approx} 1.4, the median masses of the host halos of central and satellite quasars are constrained to be M{sub cen} = 4.1{sup +0.3}{sub -0.4} Multiplication-Sign 10{sup 12} h{sup -1} M{sub Sun} and M{sub sat} = 3.6{sup +0.8}{sub -1.0} Multiplication-Sign 10{sup 14} h{sup -1} M{sub Sun }, respectively. To investigate the redshift evolution of the quasar-halo relationship, we also perform HOD modeling of the projected 2PCF measured by Shen et al. for SDSS quasars with median redshift 3.2. We find tentative evidence for an increase in the mass scale of quasar host halos-the inferred median mass of halos hosting central quasars at z {approx} 3.2 is M{sub cen} = 14.1{sup +5.8}{sub -6.9} Multiplication-Sign 10{sup 12} h{sup -1} M{sub Sun }. The cutoff profiles of the mean occupation functions of central quasars reveal that quasar luminosity is more tightly correlated with halo mass at higher redshifts. The average quasar duty cycle around the median host halo mass is inferred to be f

Modelling the effects of cutting off infected branches and replanting on fire-blight transmission using Filippov systems.

PubMed

Chen, Can; Li, Chentong; Kang, Yanmei

2018-02-14

Fire blight is one of the most devastating plant diseases in the world. This paper proposes a Filippov fire-blight model incorporating cutting off infected branches and replanting susceptible trees. The Filippov-type model is formulated by considering that no control strategy is taken if the number of infected trees is less than an infected threshold level I c ; further, we cut off infected branches once the number of infected trees exceeds I c ; meanwhile, we replant trees if the number of susceptible trees is less than a susceptible threshold level S c . The global dynamical behaviour of the Filippov system is investigated. It is shown that model solutions ultimately converge to the positive equilibrium that lies in the region above I c , or below I c , or on I=I c , as we vary the susceptible and infected threshold values S c and I c . Our results indicate that proper combinations of the susceptible and infected threshold values based on the threshold policy can lead the number of infected trees to an acceptable level, when complete eradication is not economically desirable. Copyright © 2017 Elsevier Ltd. All rights reserved.

Clouds Dominate the Galactic Halo

NASA Astrophysics Data System (ADS)

2003-01-01

Using the exquisite sensitivity of the National Science Foundation's Robert C. Byrd Green Bank Telescope (GBT), astronomer Jay Lockman of the National Radio Astronomy Observatory (NRAO) in Green Bank, W. Va., has produced the best cross-section ever of the Milky Way Galaxy's diffuse halo of hydrogen gas. This image confirms the presence of discrete hydrogen clouds in the halo, and could help astronomers understand the origin and evolution of the rarefied atmosphere that surrounds our Galaxy. Lockman presented his findings at the American Astronomical Society meeting in Seattle, WA. Hydrogen Clouds Graphic Artist's Rendering of the Milky Way (background) with insert showing GBT image of cross-section of neutral atomic Hydrogen Credit: Kirk Woellert/National Science Foundation Patricia Smiley, NRAO. "The first observations with the Green Bank Telescope suggested that the hydrogen in the lower halo, the transition zone between the Milky Way and intergalactic space, is very clumpy," said Lockman. "The latest data confirm these results and show that instead of trailing away smoothly from the Galactic plane, a significant fraction of the hydrogen gas in the halo is concentrated in discrete clouds. There are even some filaments." Beyond the star-filled disk of the Milky Way, there exists an extensive yet diffuse halo of hydrogen gas. For years, astronomers have speculated about the origin and structure of this gas. "Even the existence of neutral hydrogen in the halo has been somewhat of a puzzle," Lockman remarked. "Unlike the Earth's atmosphere, which is hot enough to hold itself up against the force of gravity, the hydrogen in the halo is too cool to support itself against the gravitational pull of the Milky Way." Lockman points out that some additional factor has to be involved to get neutral hydrogen to such large distances from the Galactic plane. "This force could be cosmic rays, a supersonic wind, the blast waves from supernovae, or something we have not thought of

The Mass and Absorption Columns of Galactic Gaseous Halos

NASA Astrophysics Data System (ADS)

Qu, Zhijie; Bregman, Joel N.

2018-03-01

The galactic gaseous halo is a gas reservoir for the interstellar medium in the galaxy disk, supplying materials for star formation. We developed a gaseous halo model connecting the galaxy disk and the gaseous halo by assuming that the star formation rate on the disk is balanced by the radiative cooling rate of the gaseous halo, including stellar feedback. In addition to a single-temperature gaseous halo in collisional ionization equilibrium, we also consider the photoionization effect and a steady-state cooling model. Photoionization is important for modifying the ion distribution in low-mass galaxies and in the outskirts of massive galaxies due to the low densities. The multiphase cooling model dominates the region within the cooling radius, where t cooling = t Hubble. Our model reproduces most of the observed high ionization state ions for a wide range of galaxy masses (i.e., O VI, O VII, Ne VIII, Mg X, and O VIII). We find that the O VI column density has a narrow range around ≈1014 cm‑2 for halo masses from M ⋆ ≈ 3 × 1010 M ⊙ to 6 × 1012 M ⊙, which is consistent with some but not all observational studies. For galaxies with halo masses ≲3 × 1011 M ⊙, photoionization produces most of the O VI, while for more massive galaxies, the O VI is from the medium that is cooling from higher temperatures. Fitting the Galactic (Milky-Way) O VII and O VIII suggests a gaseous halo model where the metallicity is ≈0.55 Z ⊙ and the gaseous halo has a maximum temperature of ≈1.9 × 106 K. This gaseous halo model does not close the census of baryonic material within R 200.

Constraining the noise-free distribution of halo spin parameters

NASA Astrophysics Data System (ADS)

Benson, Andrew J.

2017-11-01

Any measurement made using an N-body simulation is subject to noise due to the finite number of particles used to sample the dark matter distribution function, and the lack of structure below the simulation resolution. This noise can be particularly significant when attempting to measure intrinsically small quantities, such as halo spin. In this work, we develop a model to describe the effects of particle noise on halo spin parameters. This model is calibrated using N-body simulations in which the particle noise can be treated as a Poisson process on the underlying dark matter distribution function, and we demonstrate that this calibrated model reproduces measurements of halo spin parameter error distributions previously measured in N-body convergence studies. Utilizing this model, along with previous measurements of the distribution of halo spin parameters in N-body simulations, we place constraints on the noise-free distribution of halo spins. We find that the noise-free median spin is 3 per cent lower than that measured directly from the N-body simulation, corresponding to a shift of approximately 40 times the statistical uncertainty in this measurement arising purely from halo counting statistics. We also show that measurement of the spin of an individual halo to 10 per cent precision requires at least 4 × 104 particles in the halo - for haloes containing 200 particles, the fractional error on spins measured for individual haloes is of order unity. N-body simulations should be viewed as the results of a statistical experiment applied to a model of dark matter structure formation. When viewed in this way, it is clear that determination of any quantity from such a simulation should be made through forward modelling of the effects of particle noise.

The f ( R ) halo mass function in the cosmic web

DOE Office of Scientific and Technical Information (OSTI.GOV)

Braun-Bates, F. von; Winther, H.A.; Alonso, D.

An important indicator of modified gravity is the effect of the local environment on halo properties. This paper examines the influence of the local tidal structure on the halo mass function, the halo orientation, spin and the concentration-mass relation. We use the excursion set formalism to produce a halo mass function conditional on large-scale structure. Our simple model agrees well with simulations on large scales at which the density field is linear or weakly non-linear. Beyond this, our principal result is that f ( R ) does affect halo abundances, the halo spin parameter and the concentration-mass relationship in anmore » environment-independent way, whereas we find no appreciable deviation from \\text(ΛCDM) for the mass function with fixed environment density, nor the alignment of the orientation and spin vectors of the halo to the eigenvectors of the local cosmic web. There is a general trend for greater deviation from \\text(ΛCDM) in underdense environments and for high-mass haloes, as expected from chameleon screening.« less

Observation and analysis of halo current in EAST

NASA Astrophysics Data System (ADS)

Chen, Da-Long; Shen, Biao; Qian, Jin-Ping; Sun, You-Wen; Liu, Guang-Jun; Shi, Tong-Hui; Zhuang, Hui-Dong; Xiao, Bing-Jia

2014-06-01

Plasma in a typically elongated cross-section tokamak (for example, EAST) is inherently unstable against vertical displacement. When plasma loses the vertical position control, it moves downward or upward, leading to disruption, and a large halo current is generated helically in EAST typically in the scrape-off layer. When flowing into the vacuum vessel through in-vessel components, the halo current will give rise to a large J × B force acting on the vessel and the in-vessel components. In EAST VDE experiment, part of the eddy current is measured in halo sensors, due to the large loop voltage. Primary experimental data demonstrate that the halo current first lands on the outer plate and then flows clockwise, and the analysis of the information indicates that the maximum halo current estimated in EAST is about 0.4 times the plasma current and the maximum value of TPF × Ih/IP0 is 0.65, furthermore Ih/Ip0 and TPF × Ih/Ip0 tend to increase with the increase of Ip0. The test of the strong gas injection system shows good success in increasing the radiated power, which may be effective in reducing the halo current.

Statistics of Dark Matter Halos from Gravitational Lensing.

PubMed

Jain; Van Waerbeke L

2000-02-10

We present a new approach to measure the mass function of dark matter halos and to discriminate models with differing values of Omega through weak gravitational lensing. We measure the distribution of peaks from simulated lensing surveys and show that the lensing signal due to dark matter halos can be detected for a wide range of peak heights. Even when the signal-to-noise ratio is well below the limit for detection of individual halos, projected halo statistics can be constrained for halo masses spanning galactic to cluster halos. The use of peak statistics relies on an analytical model of the noise due to the intrinsic ellipticities of source galaxies. The noise model has been shown to accurately describe simulated data for a variety of input ellipticity distributions. We show that the measured peak distribution has distinct signatures of gravitational lensing, and its non-Gaussian shape can be used to distinguish models with different values of Omega. The use of peak statistics is complementary to the measurement of field statistics, such as the ellipticity correlation function, and is possibly not susceptible to the same systematic errors.

Unmixing the Galactic halo with RR Lyrae tagging

NASA Astrophysics Data System (ADS)

Belokurov, V.; Deason, A. J.; Koposov, S. E.; Catelan, M.; Erkal, D.; Drake, A. J.; Evans, N. W.

2018-06-01

We show that tagging RR Lyrae stars according to their location in the period-amplitude diagram can be used to shed light on the genesis of the Galactic stellar halo. The mixture of RR Lyrae of ab type, separated into classes along the lines suggested by Oosterhoff, displays a strong and coherent evolution with Galactocentric radius. The change in the RR Lyrae composition appears to coincide with the break in the halo's radial density profile at ˜25 kpc. Using simple models of the stellar halo, we establish that at least three different types of accretion events are necessary to explain the observed RRab behaviour. Given that there exists a correlation between the RRab class fraction and the total stellar content of a dwarf satellite, we hypothesize that the field halo RRab composition is controlled by the mass of the progenitor contributing the bulk of the stellar debris at the given radius. This idea is tested against a suite of cosmological zoom-in simulations of Milky Way-like stellar halo formation. Finally, we study some of the most prominent stellar streams in the Milky Way halo and demonstrate that their RRab class fractions follow the trends established previously.

Remapping dark matter halo catalogues between cosmological simulations

NASA Astrophysics Data System (ADS)

Mead, A. J.; Peacock, J. A.

2014-05-01

We present and test a method for modifying the catalogue of dark matter haloes produced from a given cosmological simulation, so that it resembles the result of a simulation with an entirely different set of parameters. This extends the method of Angulo & White, which rescales the full particle distribution from a simulation. Working directly with the halo catalogue offers an advantage in speed, and also allows modifications of the internal structure of the haloes to account for non-linear differences between cosmologies. Our method can be used directly on a halo catalogue in a self-contained manner without any additional information about the overall density field; although the large-scale displacement field is required by the method, this can be inferred from the halo catalogue alone. We show proof of concept of our method by rescaling a matter-only simulation with no baryon acoustic oscillation (BAO) features to a more standard Λ cold dark matter model containing a cosmological constant and a BAO signal. In conjunction with the halo occupation approach, this method provides a basis for the rapid generation of mock galaxy samples spanning a wide range of cosmological parameters.

THE EFFECTS OF ANGULAR MOMENTUM ON HALO PROFILES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lentz, Erik W; Rosenberg, Leslie J; Quinn, Thomas R, E-mail: lentze@phys.washington.edu, E-mail: ljrosenberg@phys.washington.edu, E-mail: trq@astro.washington.edu

2016-05-10

The near universality of DM halo density profiles provided by N -body simulations proved to be robust against changes in total mass density, power spectrum, and some forms of initial velocity dispersion. Here we study the effects of coherently spinning up an isolated DM-only progenitor on halo structure. Halos with spins within several standard deviations of the simulated mean ( λ ≲ 0.20) produce profiles with negligible deviations from the universal form. Only when the spin becomes quite large ( λ ≳ 0.20) do departures become evident. The angular momentum distribution also exhibits a near universal form, which is alsomore » independent of halo spin up to λ ≲ 0.20. A correlation between these epidemic profiles and the presence of a strong bar in the virialized halo is also observed. These bar structures bear resemblance to the radial orbit instability in the rotationless limit.« less

Development of an Automatic Detection Program of Halo CMEs

NASA Astrophysics Data System (ADS)

Choi, K.; Park, M. Y.; Kim, J.

2017-12-01

The front-side halo CMEs are the major cause for large geomagnetic storms. Halo CMEs can result in damage to satellites, communication, electrical transmission lines and power systems. Thus automated techniques for detecting and analysing Halo CMEs from coronagraph data are of ever increasing importance for space weather monitoring and forecasting. In this study, we developed the algorithm that can automatically detect and do image processing the Halo CMEs in the images from the LASCO C3 coronagraph on board the SOHO spacecraft. With the detection algorithm, we derived the geometric and kinematical parameters of halo CMEs, such as source location, width, actual CME speed and arrival time at 21.5 solar radii.

The massive halos of spiral galaxies

NASA Technical Reports Server (NTRS)

Zaritsky, Dennis; White, Simon D. M.

1994-01-01

We use a sample of satellite galaxies to demonstrate the existence of extended massive dark halos around spiral galaxies. Isolated spirals with rotation velocities near 250 km/s have a typical halo mass within 200 kpc of 1.5-2.6 x 10(exp 12) solar mass (90% confidence range for H(sub 0) = 75 km/s/Mpc). This result is most easily derived using standard mass estimator techniques, but such techniques do not account for the strong observational selection effects in the sample, nor for the extended mass distributions that the data imply. These complications can be addressed using scale-free models similar to those previously employed to study binary galaxies. When satellite velocities are assumed isotropic, both methods imply massive and extended halos. However, the derived masses depend sensitively on the assumed shape of satellite orbits. Furthermore, both methods ignore the fact that many of the satellites in the sample have orbital periods comparable to the Hubble time. The orbital phases of such satellites cannot be random, and their distribution in radius cannot be freely adjusted; rather these properties reflect ongoing infall onto the outer halos of their primaries. We use detailed dynamical models for halo formation to evaluate these problems, and we devise a maximum likelihood technique for estimating the parameters of such models from the data. The most strongly constrained parameter is the mass within 200-300 kpc, giving the confidence limits quoted above. The eccentricity, e, of satellite orbits is also strongly constrained, 0.50 less than e less than 0.88 at 90% confidence, implying a near-isotropic distribution of satellite velocities. The cosmic density parameter in the vicinity of our isolated halos exceeds 0.13 at 90% confidence, with preferred values exceeding 0.3.

Substructure of fuzzy dark matter haloes

NASA Astrophysics Data System (ADS)

Du, Xiaolong; Behrens, Christoph; Niemeyer, Jens C.

2017-02-01

We derive the halo mass function (HMF) for fuzzy dark matter (FDM) by solving the excursion set problem explicitly with a mass-dependent barrier function, which has not been done before. We find that compared to the naive approach of the Sheth-Tormen HMF for FDM, our approach has a higher cutoff mass and the cutoff mass changes less strongly with redshifts. Using merger trees constructed with a modified version of the Lacey & Cole formalism that accounts for suppressed small-scale power and the scale-dependent growth of FDM haloes and the semi-analytic GALACTICUS code, we study the statistics of halo substructure including the effects from dynamical friction and tidal stripping. We find that if the dark matter is a mixture of cold dark matter (CDM) and FDM, there will be a suppression on the halo substructure on small scales which may be able to solve the missing satellites problem faced by the pure CDM model. The suppression becomes stronger with increasing FDM fraction or decreasing FDM mass. Thus, it may be used to constrain the FDM model.

Historic halo displays as weather indicator: Criteria and examples

NASA Astrophysics Data System (ADS)

Neuhäuser, Dagmar L.; Neuhäuser, Ralph

2016-04-01

There are numerous celestial signs reported in historic records, many of them refer to atmospheric ("sub-lunar") phenomena, such as ice halos and aurorae. In an interdisciplinary collaboration between astrophysics and cultural astronomy, we noticed that celestial observations including meteorological phenomena are often misinterpreted, mostly due to missing genuine criteria: especially ice crystal halos were recorded frequently in past centuries for religious reasons, but are mistaken nowadays often for other phenomena like aurorae. Ice halo displays yield clear information on humidity and temperature in certain atmospheric layers, and thereby indicate certain weather patterns. Ancient so-called rain makers used halo observations for weather forecast; e.g., a connection between certain halo displays and rain a few day later is statistically significant. Ice halos exist around sun and moon and are reported for both (they can stay for several days): many near, middle, and far eastern records from day- and night-time include such observations with high frequency. (Partly based on publications on halos by D.L. Neuhäuser & R. Neuhäuser, available at http://www.astro.uni-jena.de/index.php/terra-astronomy.html)

Testing feedback-modified dark matter haloes with galaxy rotation curves: estimation of halo parameters and consistency with ΛCDM scaling relations

NASA Astrophysics Data System (ADS)

Katz, Harley; Lelli, Federico; McGaugh, Stacy S.; Di Cintio, Arianna; Brook, Chris B.; Schombert, James M.

2017-04-01

Cosmological N-body simulations predict dark matter (DM) haloes with steep central cusps (e.g. NFW). This contradicts observations of gas kinematics in low-mass galaxies that imply the existence of shallow DM cores. Baryonic processes such as adiabatic contraction and gas outflows can, in principle, alter the initial DM density profile, yet their relative contributions to the halo transformation remain uncertain. Recent high-resolution, cosmological hydrodynamic simulations by Di Cintio et al. (DC14) predict that inner density profiles depend systematically on the ratio of stellar-to-DM mass (M*/Mhalo). Using a Markov Chain Monte Carlo approach, we test the NFW and the M*/Mhalo-dependent DC14 halo models against a sample of 147 galaxy rotation curves from the new Spitzer Photometry and Accurate Rotation Curves data set. These galaxies all have extended H I rotation curves from radio interferometry as well as accurate stellar-mass-density profiles from near-infrared photometry. The DC14 halo profile provides markedly better fits to the data compared to the NFW profile. Unlike NFW, the DC14 halo parameters found in our rotation-curve fits naturally fall within two standard deviations of the mass-concentration relation predicted by Λ cold dark matter (ΛCDM) and the stellar mass-halo mass relation inferred from abundance matching with few outliers. Halo profiles modified by baryonic processes are therefore more consistent with expectations from ΛCDM cosmology and provide better fits to galaxy rotation curves across a wide range of galaxy properties than do halo models that neglect baryonic physics. Our results offer a solution to the decade long cusp-core discrepancy.

Globular Cluster Contributions to the Galactic Halo

NASA Astrophysics Data System (ADS)

Martell, Sarah; Grebel, Eva; Lai, David

2010-08-01

The goal of this project is to confirm chemically that globular clusters are the source of as much as half the population of the Galactic halo. Using moderate-resolution spectroscopy from the SEGUE survey, we have identified a previously unknown population of halo field giants with distinctly strong CN features. CN variations are typically only observed in globular clusters, so these stars are interpreted as immigrants to the halo that originally formed in globular clusters. In one night of Keck/HIRES time, we will obtain high-quality, high- resolution spectra for five such stars, and determine abundances of O, Na, Mg, Al, alpha, iron-peak and neutron-capture elements. With this information we can state clearly whether these unusual CN-strong halo stars carry the full abundance pattern seen in CN-strong globular cluster stars, with depleted C, O, and Mg and enhanced N, Na, and Al. This type of coarse ``chemical tagging'' will allow a clearer division of the Galactic halo into contributions from globular clusters and from dwarf galaxies, and will place constraints on theoretical models of globular cluster formation and evolution.

Galaxy-halo alignments in the Horizon-AGN cosmological hydrodynamical simulation

NASA Astrophysics Data System (ADS)

Chisari, N. E.; Koukoufilippas, N.; Jindal, A.; Peirani, S.; Beckmann, R. S.; Codis, S.; Devriendt, J.; Miller, L.; Dubois, Y.; Laigle, C.; Slyz, A.; Pichon, C.

2017-11-01

Intrinsic alignments of galaxies are a significant astrophysical systematic affecting cosmological constraints from weak gravitational lensing. Obtaining numerical predictions from hydrodynamical simulations of expected survey volumes is expensive, and a cheaper alternative relies on populating large dark matter-only simulations with accurate models of alignments calibrated on smaller hydrodynamical runs. This requires connecting the shapes and orientations of galaxies to those of dark matter haloes and to the large-scale structure. In this paper, we characterize galaxy-halo alignments in the Horizon-AGN cosmological hydrodynamical simulation. We compare the shapes and orientations of galaxies in the redshift range of 0 < z < 3 to those of their embedding dark matter haloes, and to the matching haloes of a twin dark-matter only run with identical initial conditions. We find that galaxy ellipticities, in general, cannot be predicted directly from halo ellipticities. The mean misalignment angle between the minor axis of a galaxy and its embedding halo is a function of halo mass, with residuals arising from the dependence of alignment on galaxy type, but not on environment. Haloes are much more strongly aligned among themselves than galaxies, and they decrease their alignment towards low redshift. Galaxy alignments compete with this effect, as galaxies tend to increase their alignment with haloes towards low redshift. We discuss the implications of these results for current halo models of intrinsic alignments and suggest several avenues for improvement.

Sensitivity of the halo nuclei-12C elastic scattering at incident nucleon energy 800 MeV to the halo density distribution

NASA Astrophysics Data System (ADS)

Hassan, M. A. M.; Nour El-Din, M. S. M.; Ellithi, A.; Hosny, H.; Salama, T. N. E.

2017-10-01

In the framework of Glauber optical limit approximation where Coulomb effect is taken into account, the elastic scattering differential cross section for halo nuclei with {}^{12}{C} at 800 MeV/N has been calculated. Its sensitivity to the halo densities and the root mean square of the core and halo is the main goal of the current study. The projectile nuclei are taken to be one-neutron and two-neutron halo. The calculations are carried out for Gaussian-Gaussian, Gaussian-Oscillator and Gaussian-2 s phenomenological densities for each considered projectile in the mass number range 6-29. Also included a comparison between the obtained results of phenomenological densities and the results within the microscopic densities LSSM of {}6{He} and {}^{11}{Li} and microscopic densities GCM of {}^{11}{Be} where the density of the target nucleus {}^{12}{C} obtained from electron-{}^{12}{C} scattering is used. The zero range approximation is considered in the calculations. We found that the sensitivity of elastic scattering differential cross section to the halo density is clear if the nucleus appears as two clear different clusters, core and halo.

The slight spin of the old stellar halo

NASA Astrophysics Data System (ADS)

Deason, Alis J.; Belokurov, Vasily; Koposov, Sergey E.; Gómez, Facundo A.; Grand, Robert J.; Marinacci, Federico; Pakmor, Rüdiger

2017-09-01

We combine Gaia data release 1 astrometry with Sloan Digital Sky Survey (SDSS) images taken some ˜10-15 years earlier, to measure proper motions of stars in the halo of our Galaxy. The SDSS-Gaia proper motions have typical statistical errors of 2 mas yr-1 down to r ˜ 20 mag, and are robust to variations with magnitude and colour. Armed with this exquisite set of halo proper motions, we identify RR Lyrae, blue horizontal branch (BHB), and K giant stars in the halo, and measure their net rotation with respect to the Galactic disc. We find evidence for a gently rotating prograde signal (〈Vϕ〉 ˜ 5-25 km s-1) in the halo stars, which shows little variation with Galactocentric radius out to 50 kpc. The average rotation signal for the three populations is 〈Vϕ〉 = 14 ± 2 ± 10 (syst.) km s-1. There is also tentative evidence for a kinematic correlation with metallicity, whereby the metal richer BHB and K giant stars have slightly stronger prograde rotation than the metal poorer stars. Using the Auriga simulation suite, we find that the old (T >10 Gyr) stars in the simulated haloes exhibit mild prograde rotation, with little dependence on radius or metallicity, in general agreement with the observations. The weak halo rotation suggests that the Milky Way has a minor in situ halo component, and has undergone a relatively quiet accretion history.

The Prevalence of the 22 deg Halo in Cirrus Clouds

NASA Technical Reports Server (NTRS)

Diedenhoven, vanBastiaan

2014-01-01

Halos at 22 deg from the sun attributed to randomly-orientated, pristine hexagonal crystals are frequently observed through ice clouds. These frequent sightings of halos formed by pristine crystals pose an apparent inconsistency with the dominance of distorted, nonpristine ice crystals indicated by in situ and remote sensing data. Furthermore, the 46 deg halo, which is associated with pristine hexagonal crystals as well, is observed far less frequently than the 22 deg halo. Considering that plausible mechanisms that could cause crystal distortion such as aggregation, sublimation, riming and collisions are stochastic processes that likely lead to distributions of crystals with varying distortion levels, here the presence of the 22 deg and 46 deg halo features in phase functions of mixtures of pristine and distorted hexagonal ice crystals is examined. We conclude that the 22 deg halo feature is generally present if the contribution by pristine crystals to the total scattering cross section is greater than only about 10% in the case of compact particles or columns, and greater than about 40% for plates. The 46 deg halo feature is present only if the mean distortion level is low and the contribution of pristine crystals to the total scattering cross section is above about 20%, 50% and 70%, in the case of compact crystals, plates and columns, respectively. These results indicate that frequent sightings of 22 deg halos are not inconsistent with the observed dominance of distorted, non-pristine ice crystals. Furthermore, the low mean distortion levels and large contributions by pristine crystals needed to produce the 461 halo features provide a potential explanation of the common sighting of the 22 deg halo without any detectable 46 deg halo.

Diverse stellar haloes in nearby Milky Way mass disc galaxies

NASA Astrophysics Data System (ADS)

Harmsen, Benjamin; Monachesi, Antonela; Bell, Eric F.; de Jong, Roelof S.; Bailin, Jeremy; Radburn-Smith, David J.; Holwerda, Benne W.

2017-04-01

We have examined the resolved stellar populations at large galactocentric distances along the minor axis (from 10 kpc up to between 40 and 75 kpc), with limited major axis coverage, of six nearby highly inclined Milky Way (MW) mass disc galaxies using Hubble Space Telescope data from the Galaxy haloes, Outer discs, Substructure, Thick discs, and Star clusters (GHOSTS) survey. We select red giant branch stars to derive stellar halo density profiles. The projected minor axis density profiles can be approximated by power laws with projected slopes of -2 to -3.7 and a diversity of stellar halo masses of 1-6 × 109 M⊙, or 2-14 per cent of the total galaxy stellar masses. The typical intrinsic scatter around a smooth power-law fit is 0.05-0.1 dex owing to substructure. By comparing the minor and major axis profiles, we infer projected axis ratios c/a at ˜25 kpc between 0.4and0.75. The GHOSTS stellar haloes are diverse, lying between the extremes charted out by the (rather atypical) haloes of the MW and M31. We find a strong correlation between the stellar halo metallicities and the stellar halo masses. We compare our results with cosmological models, finding good agreement between our observations and accretion-only models where the stellar haloes are formed by the disruption of dwarf satellites. In particular, the strong observed correlation between stellar halo metallicity and mass is naturally reproduced. Low-resolution hydrodynamical models have unrealistically high stellar halo masses. Current high-resolution hydrodynamical models appear to predict stellar halo masses somewhat higher than observed but with reasonable metallicities, metallicity gradients, and density profiles.

Nucleoid halo expansion indirectly measures DNA damage in single cells.

PubMed

Thomas, E A; Thomas, C A

1989-07-01

A simple test has been developed that measures how much DNA damage has occurred in a single mammalian cell. The procedure is based on the microscopic examination of "halos" of nucleoids that adhere to coverslips. Nucleoids are produced by flowing salt solutions containing detergents over the attached cells. The nucleoid halos are thought to be a tangle of loops of free DNA that emanate from the remnants of the nucleus. When visualized by staining with ethidium bromide the nucleoid halos first expand, and then contract as the concentration of ethidium increases. Exposure of nucleoids to very low levels of DNA chain-breaking treatments results in the incremental expansion of the halos to a maximum of 15 microns or more. Our assay is based upon quantitating the degree of halo expansion. If intact cells are exposed to DNA-damaging treatments, then allowed increasing periods of post-treatment growth before forming nucleoids, the DNA repair processes result first in expanded and then in contracted halos. By admixing a supercoiled plasma DNA of known length (38 kb) to nucleoids with contracted halos, the fractional halo expansion and the fraction of surviving plasmid supercoils can be measured from the same solution. Use of photodynamic DNA damage showed that the halo expansion was 11.6 times more sensitive than plasmid relaxation. Use of gamma-irradiation showed that the halo expansion was 3.6 times more sensitive than plasmid relaxation. The latter value demonstrates that one break per 137,000 bp results in the expansion of the halos to 63% of their maximal value. We estimate that this method will detect about 5000 breaks per nucleus containing 5 x 10(9) bp.

Field Susceptibility of Quince Hybrids to Fire Blight in Bulgaria

USDA-ARS?s Scientific Manuscript database

Spread of fire blight in Bulgaria during the last 20 years has nearly eliminated commercial production of pear and quince. Damage has increased in both nurseries and orchards, yet susceptible cultivars continue to be planted. Quince is the host most frequently attacked by Erwinia amylovora in Bulgar...

'Sunrise': A new early maturing fire blight resistant pear cultivar

USDA-ARS?s Scientific Manuscript database

'Sunrise' is a new pear (Pyrus communis L.) cultivar released by the U.S. Department of Agriculture, Agricultural Research Service. It combines a high degree of resistance to fire blight with excellent fruit quality. The sources of resistance in the pedigree are the old American cultivar, 'Seckel'...

Pseudomonas syringae pv. phaseolicola isolated from weeds in bean crop fields.

PubMed

Fernández-Sanz, A M; Rodicio, M R; González, A J

2016-04-01

Pseudomonas syringae pv. phaseolicola, the causative agent of halo blight in common bean (Phaseolus vulgaris L.), was isolated from weeds associated with bean crops in Spain. The bacterium was recovered from Fumaria sp, Mercurialis annua, Solanum nigrum and Sonchus oleraceus. Ps. s. pv. phaseolicola had previously been isolated from leguminous plants and S. nigrum, but to our knowledge, this is the first time it was recovered from the other three species. The isolates were phenotypically and genetically characterized, and they were compared with isolates recovered from common beans. Five different genotypic profiles were detected by PmeI-PFGE, two of them being of new description. Weed isolates were as pathogenic on bean plants as bean isolates, but they were not pathogenic on S. nigrum. Regarding the survival of the pathogen in weeds, Ps. s. pv. phaseolicola was isolated from So. oleraceus 11 weeks after the end of the bean crop. These results strongly support the idea of weeds as a potential source of inoculum for halo blight in bean. It has traditionally been considered that the main source of inoculum of Pseudomonas syringae pv. phaseolicola causing halo blight disease in Phaseolus vulgaris are the bean seeds, and that the host range of the bacterium is almost restricted to leguminous plants. In this study, the bacterium was recovered from four nonleguminous weed species collected in bean fields, and its permanence in weeds for at least 11 weeks after the harvesting of the beans was demonstrated. We have also proved that the strains isolated from weeds were pathogenic on bean plants. Accordingly, the host range of Ps. s. pv. phaseolicola could be broader than previously thought and weeds appear to be acting as a reservoir of the pathogen until the next crop. © 2016 The Society for Applied Microbiology.

Halo-independent direct detection analyses without mass assumptions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, Adam J.; Fox, Patrick J.; Kahn, Yonatan

2015-10-01

Results from direct detection experiments are typically interpreted by employing an assumption about the dark matter velocity distribution, with results presented in the m{sub χ}−σ{sub n} plane. Recently methods which are independent of the DM halo velocity distribution have been developed which present results in the v{sub min}− g-tilde plane, but these in turn require an assumption on the dark matter mass. Here we present an extension of these halo-independent methods for dark matter direct detection which does not require a fiducial choice of the dark matter mass. With a change of variables from v{sub min} to nuclear recoil momentummore » (p{sub R}), the full halo-independent content of an experimental result for any dark matter mass can be condensed into a single plot as a function of a new halo integral variable, which we call h-tilde (p{sub R}). The entire family of conventional halo-independent g-tilde (v{sub min}) plots for all DM masses are directly found from the single h-tilde (p{sub R}) plot through a simple rescaling of axes. By considering results in h-tilde (p{sub R}) space, one can determine if two experiments are inconsistent for all masses and all physically possible halos, or for what range of dark matter masses the results are inconsistent for all halos, without the necessity of multiple g-tilde (v{sub min}) plots for different DM masses. We conduct a sample analysis comparing the CDMS II Si events to the null results from LUX, XENON10, and SuperCDMS using our method and discuss how the results can be strengthened by imposing the physically reasonable requirement of a finite halo escape velocity.« less

Halo-independent direct detection analyses without mass assumptions

DOE PAGES

Anderson, Adam J.; Fox, Patrick J.; Kahn, Yonatan; ...

2015-10-06

Results from direct detection experiments are typically interpreted by employing an assumption about the dark matter velocity distribution, with results presented in the m χ – σ n plane. Recently methods which are independent of the DM halo velocity distribution have been developed which present results in the v min – g ~ plane, but these in turn require an assumption on the dark matter mass. Here we present an extension of these halo-independent methods for dark matter direct detection which does not require a fiducial choice of the dark matter mass. With a change of variables from v minmore » to nuclear recoil momentum (p R), the full halo-independent content of an experimental result for any dark matter mass can be condensed into a single plot as a function of a new halo integral variable, which we call tilde h(p R). The entire family of conventional halo-independent tilde g ~(v min) plots for all DM masses are directly found from the single tilde h ~(p R) plot through a simple rescaling of axes. By considering results in tildeh ~(p R) space, one can determine if two experiments are inconsistent for all masses and all physically possible halos, or for what range of dark matter masses the results are inconsistent for all halos, without the necessity of multiple tilde g ~(v min) plots for different DM masses. As a result, we conduct a sample analysis comparing the CDMS II Si events to the null results from LUX, XENON10, and SuperCDMS using our method and discuss how the results can be strengthened by imposing the physically reasonable requirement of a finite halo escape velocity.« less

Abort Options for Human Missions to Earth-Moon Halo Orbits

NASA Technical Reports Server (NTRS)

Jesick, Mark C.

2013-01-01

Abort trajectories are optimized for human halo orbit missions about the translunar libration point (L2), with an emphasis on the use of free return trajectories. Optimal transfers from outbound free returns to L2 halo orbits are numerically optimized in the four-body ephemeris model. Circumlunar free returns are used for direct transfers, and cislunar free returns are used in combination with lunar gravity assists to reduce propulsive requirements. Trends in orbit insertion cost and flight time are documented across the southern L2 halo family as a function of halo orbit position and free return flight time. It is determined that the maximum amplitude southern halo incurs the lowest orbit insertion cost for direct transfers but the maximum cost for lunar gravity assist transfers. The minimum amplitude halo is the most expensive destination for direct transfers but the least expensive for lunar gravity assist transfers. The on-orbit abort costs for three halos are computed as a function of abort time and return time. Finally, an architecture analysis is performed to determine launch and on-orbit vehicle requirements for halo orbit missions.

Dark energy and extended dark matter halos

NASA Astrophysics Data System (ADS)

Chernin, A. D.; Teerikorpi, P.; Valtonen, M. J.; Dolgachev, V. P.; Domozhilova, L. M.; Byrd, G. G.

2012-03-01

The cosmological mean matter (dark and baryonic) density measured in the units of the critical density is Ωm = 0.27. Independently, the local mean density is estimated to be Ωloc = 0.08-0.23 from recent data on galaxy groups at redshifts up to z = 0.01-0.03 (as published by Crook et al. 2007, ApJ, 655, 790 and Makarov & Karachentsev 2011, MNRAS, 412, 2498). If the lower values of Ωloc are reliable, as Makarov & Karachentsev and some other observers prefer, does this mean that the Local Universe of 100-300 Mpc across is an underdensity in the cosmic matter distribution? Or could it nevertheless be representative of the mean cosmic density or even be an overdensity due to the Local Supercluster therein. We focus on dark matter halos of groups of galaxies and check how much dark mass the invisible outer layers of the halos are able to host. The outer layers are usually devoid of bright galaxies and cannot be seen at large distances. The key factor which bounds the size of an isolated halo is the local antigravity produced by the omnipresent background of dark energy. A gravitationally bound halo does not extend beyond the zero-gravity surface where the gravity of matter and the antigravity of dark energy balance, thus defining a natural upper size of a system. We use our theory of local dynamical effects of dark energy to estimate the maximal sizes and masses of the extended dark halos. Using data from three recent catalogs of galaxy groups, we show that the calculated mass bounds conform with the assumption that a significant amount of dark matter is located in the invisible outer parts of the extended halos, sufficient to fill the gap between the observed and expected local matter density. Nearby groups of galaxies and the Virgo cluster have dark halos which seem to extend up to their zero-gravity surfaces. If the extended halo is a common feature of gravitationally bound systems on scales of galaxy groups and clusters, the Local Universe could be typical or even

Dynamical Constraints On The Galaxy-Halo Connection

NASA Astrophysics Data System (ADS)

Desmond, Harry

2017-07-01

Dark matter halos comprise the bulk of the universe's mass, yet must be probed by the luminous galaxies that form within them. A key goal of modern astrophysics, therefore, is to robustly relate the visible and dark mass, which to first order means relating the properties of galaxies and halos. This may be expected not only to improve our knowledge of galaxy formation, but also to enable high-precision cosmological tests using galaxies and hence maximise the utility of future galaxy surveys. As halos are inaccessible to observations - as galaxies are to N-body simulations - this relation requires an additional modelling step.The aim of this thesis is to develop and evaluate models of the galaxy-halo connection using observations of galaxy dynamics. In particular, I build empirical models based on the technique of halo abundance matching for five key dynamical scaling relations of galaxies - the Tully-Fisher, Faber-Jackson, mass-size and mass discrepancy-acceleration relations, and Fundamental Plane - which relate their baryon distributions and rotation or velocity dispersion profiles. I then develop a statistical scheme based on approximate Bayesian computation to compare the predicted and measured values of a number of summary statistics describing the relations' important features. This not only provides quantitative constraints on the free parameters of the models, but also allows absolute goodness-of-fit measures to be formulated. I find some features to be naturally accounted for by an abundance matching approach and others to impose new constraints on the galaxy-halo connection; the remainder are challenging to account for and may imply galaxy-halo correlations beyond the scope of basic abundance matching.Besides providing concrete statistical tests of specific galaxy formation theories, these results will be of use for guiding the inputs of empirical and semi-analytic galaxy formation models, which require galaxy-halo correlations to be imposed by hand. As

Budagovsky 9 rootstock: uncovering a novel resistance to fire blight

USDA-ARS?s Scientific Manuscript database

Budagovsky 9 (B.9) apple rootstock, displayed a high level of susceptibility (similar to M.9 rootstock) to fire blight bacteria (Erwinia amylovora) when leaves of non-grafted B.9 plants were inoculated. However, when older B.9 rootstock tissue was inoculated directly with E. amylovora, rootstock tis...

Quince (Cydonia oblonga) emerges from the ashes of fire blight

USDA-ARS?s Scientific Manuscript database

The two-decade history of fire blight in Bulgaria revealed quince as one of the most frequently attacked hosts and its production on a large scale has almost been entirely eliminated. Nevertheless, this species will play an important epidemiological role as a permanent source of inoculum for other p...

Studies on the Control of Ascochyta Blight in Field Peas (Pisum sativum L.) Caused by Ascochyta pinodes in Zhejiang Province, China

PubMed Central

Liu, Na; Xu, Shengchun; Yao, Xiefeng; Zhang, Guwen; Mao, Weihua; Hu, Qizan; Feng, Zhijuan; Gong, Yaming

2016-01-01

Ascochyta blight, an infection caused by a complex of Ascochyta pinodes, Ascochyta pinodella, Ascochyta pisi, and/or Phoma koolunga, is a destructive disease in many field peas (Pisum sativum L.)-growing regions, and it causes significant losses in grain yield. To understand the composition of fungi associated with this disease in Zhejiang Province, China, a total of 65 single-pycnidiospore fungal isolates were obtained from diseased pea samples collected from 5 locations in this region. These isolates were identified as Ascochyta pinodes by molecular techniques and their morphological and physiological characteristics. The mycelia of ZJ-1 could penetrate pea leaves across the stomas, and formed specific penetration structures and directly pierced leaves. The resistance level of 23 available pea cultivars was tested against their representative isolate A. pinodes ZJ-1 using the excised leaf-assay technique. The ZJ-1 mycelia could penetrate the leaves of all tested cultivars, and they developed typical symptoms, which suggested that all tested cultivars were susceptible to the fungus. Chemical fungicides and biological control agents were screened for management of this disease, and their efficacies were further determined. Most of the tested fungicides (11 out of 14) showed high activity toward ZJ-1 with EC50 < 5 μg/mL. Moreover, fungicides, including tebuconazole, boscalid, iprodione, carbendazim, and fludioxonil, displayed more than 80% disease control efficacy under the recorded conditions. Three biocontrol strains of Bacillus sp. and one of Pantoea agglomerans were isolated from pea-related niches and significantly reduced the severity of disease under greenhouse and field conditions. To our knowledge, this is the first study on ascochyta blight in field peas, and results presented here will be useful for controlling the disease in this area. PMID:27148177

Actinomycetes from Eucalyptus and their biological activities for controlling Eucalyptus leaf and shoot blight.

PubMed

Himaman, Winanda; Thamchaipenet, Arinthip; Pathom-Aree, Wasu; Duangmal, Kannika

2016-01-01

In Thailand, Eucalyptus plantations rapidly expand across the country. Leaf and shoot blight caused by Cryptosporiopsis eucalypti, Cylindrocladium sp. and Teratosphaeria destructans is a serious disease in Eucalyptus plantations. In this study, a total of 477 actinomycete strains were successfully isolated from roots and rhizosphere soil of Eucalyptus. Four hundred and thirty nine isolates were classified as streptomycetes and 38 isolates were non-streptomycetes. Among these isolates, 272 (57.0%), 118 (24.7%) and 241 (50.5%) isolates were antagonistic to Cryptosporiopsis eucalypti, Cylindrocladium sp. and Teratosphaeria destructans, respectively. All isolates were tested for their abilities to produce siderophores, indole acetic acid (IAA) and solubilise phosphate. Most isolates (464, 97.3%) produced siderophores. The majority of isolates (345, 72.3%) solubilised phosphate. In addition, almost half of these isolates (237, 49.7%) produced indole acetic acid. Strain EUSKR2S82 which showed the strongest inhibitory effect against all tested fungi with plant growth promoting ability was selected to test with Eucalyptus. This strain could colonize plant roots and increase Eucalyptus roots length. In a detached leaves bioassay, the disease severity of EUSKR2S82-inoculated Eucalyptus leaves was only 30% compared to 95% in the control treatment. The 16S rRNA gene sequence analysis revealed that the strain EUSKR2S82 was related to Streptomyces ramulosus NRRL-B 2714(T) (99.44% similarity). Identification of non-streptomycete isolates using 16S rRNA gene sequences classified them into 9 genera: Actinoallomurus, Actinomadura, Amycolatopsis, Cryptosporangium, Microbispora, Micromonospora, Nocardia, Nonomuraea and Pseudonocardia. It is evident that Eucalyptus tree harbored several genera of actinomycetes. The selected isolate, EUSKR2S82 showed potential as a candidate for biocontrol agent of leaf and shoot blight of Eucalyptus and to promote growth. Copyright © 2016 Elsevier Gmb

A Single, Plastic Population of Mycosphaerella pinodes Causes Ascochyta Blight on Winter and Spring Peas (Pisum sativum) in France

PubMed Central

Guibert, Michèle; Leclerc, Aurélie; Andrivon, Didier; Tivoli, Bernard

2012-01-01

Plant diseases are caused by pathogen populations continuously subjected to evolutionary forces (genetic flow, selection, and recombination). Ascochyta blight, caused by Mycosphaerella pinodes, is one of the most damaging necrotrophic pathogens of field peas worldwide. In France, both winter and spring peas are cultivated. Although these crops overlap by about 4 months (March to June), primary Ascochyta blight infections are not synchronous on the two crops. This suggests that the disease could be due to two different M. pinodes populations, specialized on either winter or spring pea. To test this hypothesis, 144 pathogen isolates were collected in the field during the winter and spring growing seasons in Rennes (western France), and all the isolates were genotyped using amplified fragment length polymorphism (AFLP) markers. Furthermore, the pathogenicities of 33 isolates randomly chosen within the collection were tested on four pea genotypes (2 winter and 2 spring types) grown under three climatic regimes, simulating winter, late winter, and spring conditions. M. pinodes isolates from winter and spring peas were genetically polymorphic but not differentiated according to the type of cultivars. Isolates from winter pea were more pathogenic than isolates from spring pea on hosts raised under winter conditions, while isolates from spring pea were more pathogenic than those from winter pea on plants raised under spring conditions. These results show that disease developed on winter and spring peas was initiated by a single population of M. pinodes whose pathogenicity is a plastic trait modulated by the physiological status of the host plant. PMID:23023742

What is the Milky Way outer halo made of?

NASA Astrophysics Data System (ADS)

Jablonka, Pascale; Battaglia, G.

2018-06-01

In a framework where galaxies form hierarchically, extended stellar haloes are predicted to be an ubiquitous feature around Milky Way-like galaxies and to consist mainly of the shredded stellar component of smaller galactic systems. The type of accreted stellar systems are expected to vary according to the specific accretion and merging history of a given galaxy, and so is the fraction of stars formed in-situ versus accreted. Analysis of the chemical properties of Milky Way halo stars out to large Galactocentric radii can provide important insights into the properties of the environment in which the stars that contributed to the build-up of different regions of the Milky Way stellar halo formed. In this talk I will focus on the outer regions of the Milky Way stellar halo, and present results from a program aimed at determining chemical abundances of halo stars with large present-day Galactocentric distances, $>$15 kpc. The data-set consists of high resolution spectra for 28 red giant branch stars covering a wide metallicity range.We show that the ratio of $\\alpha$-elements over Fe as a function of [Fe/H] for our sample of outer halo stars is not dissimilar from the pattern shown by MW halo stars from solar neighborhood samples. On the other hand, significant differences appear at [Fe/H]$\\gtrsim -1.5$ when considering chemical abundance ratios such as [Ba/Fe], [Na/Fe], [Ni/Fe], [Eu/Fe], [Ba/Y]. Qualitatively, this type of chemical abundance trends are observed in massive dwarf galaxies, such as Sagittarius and the Large Magellanic Cloud. This appears to suggest a larger contribution in the outer halo of stars formed in an environment with high initial star formation rate and already polluted by asymptotic giant branch stars with respect to inner halo samples.

Validation of Fusarium Head Blight resistance QTL in US winter wheat

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), primarily caused by Fusarium graminearum Schwabe [telemorph: Gibberella zeae Schw. (Petch)], can significantly reduce the grain quality of wheat (Triticum aestivum L.) due to mycotoxin contamination. Two US soft red winter wheat cultivars, Bess and NC-Neuse, have moderate...

Validation of fusarium head blight resistance QTL in US winter wheat

USDA-ARS?s Scientific Manuscript database

Fusarium head blight (FHB), primarily caused by Fusarium graminearum Schwabe [telemorph: Gibberella zeae Schw. (Petch)], can significantly reduce the grain quality of wheat (Triticum aestivum L.) due to mycotoxin contamination. Two US soft red winter wheat cultivars, Bess and NC-Neuse, have moderate...

A single effector protein, ArvRpt2ea from Erwinia amylovora, can cause fire blight disease symptons and induces salicylic acid dependent defense response

USDA-ARS?s Scientific Manuscript database

The AvrRpt2EA effector protein of Erwinia amylovora is important for pathogen recognition in the fire blight resistant crabapple Malus ×robusta 5; however, little is known about its role in susceptible apple genotypes. In order to study its function in planta, we expressed a plant optimized version...

Velocity bias in the distribution of dark matter halos

NASA Astrophysics Data System (ADS)

Baldauf, Tobias; Desjacques, Vincent; Seljak, Uroš

2015-12-01

The standard formalism for the coevolution of halos and dark matter predicts that any initial halo velocity bias rapidly decays to zero. We argue that, when the purpose is to compute statistics like power spectra etc., the coupling in the momentum conservation equation for the biased tracers must be modified. Our new formulation predicts the constancy in time of any statistical halo velocity bias present in the initial conditions, in agreement with peak theory. We test this prediction by studying the evolution of a conserved halo population in N -body simulations. We establish that the initial simulated halo density and velocity statistics show distinct features of the peak model and, thus, deviate from the simple local Lagrangian bias. We demonstrate, for the first time, that the time evolution of their velocity is in tension with the rapid decay expected in the standard approach.

The age of the Milky Way inner halo.

PubMed

Kalirai, Jason S

2012-05-30

The Milky Way galaxy has several components, such as the bulge, disk and halo. Unravelling the assembly history of these stellar populations is often restricted because of difficulties in measuring accurate ages for low-mass, hydrogen-burning stars. Unlike these progenitors, white dwarf stars, the 'cinders' of stellar evolution, are remarkably simple objects and their fundamental properties can be measured with little ambiguity. Here I report observations of newly formed white dwarf stars in the halo of the Milky Way, and a separate analysis of archival data in the well studied 12.5-billion-year-old globular cluster Messier 4. I measure the mass distribution of the remnant stars and invert the stellar evolution process to develop a mathematical relation that links this final stellar mass to the mass of their immediate progenitors, and therefore to the age of the parent population. By applying this technique to a small sample of four nearby and kinematically confirmed halo white dwarf stars, I calculate the age of local field halo stars to be 11.4 ± 0.7 billion years. The oldest globular clusters formed 13.5 billion years ago. Future observations of newly formed white dwarf stars in the halo could be used to reduce the uncertainty, and to probe relative differences between the formation times of the youngest globular clusters and the inner halo.

ZOMG - III. The effect of halo assembly on the satellite population

NASA Astrophysics Data System (ADS)

Garaldi, Enrico; Romano-Díaz, Emilio; Borzyszkowski, Mikolaj; Porciani, Cristiano

2018-01-01

We use zoom hydrodynamical simulations to investigate the properties of satellites within galaxy-sized dark-matter haloes with different assembly histories. We consider two classes of haloes at redshift z = 0: 'stalled' haloes that assembled at z > 1 and 'accreting' ones that are still forming nowadays. Previously, we showed that the stalled haloes are embedded within thick filaments of the cosmic web, while the accreting ones lie where multiple thin filaments converge. We find that satellites in the two classes have both similar and different properties. Their mass spectra, radial count profiles, baryonic and stellar content, and the amount of material they shed are indistinguishable. However, the mass fraction locked in satellites is substantially larger for the accreting haloes as they experience more mergers at late times. The largest difference is found in the satellite kinematics. Substructures fall towards the accreting haloes along quasi-radial trajectories whereas an important tangential velocity component is developed, before accretion, while orbiting the filament that surrounds the stalled haloes. Thus, the velocity anisotropy parameter of the satellites (β) is positive for the accreting haloes and negative for the stalled ones. This signature enables us to tentatively categorize the Milky Way halo as stalled based on a recent measurement of β. Half of our haloes contain clusters of satellites with aligned orbital angular momenta corresponding to flattened structures in space. These features are not driven by baryonic physics and are only found in haloes hosting grand-design spiral galaxies, independently of their assembly history.

The globular cluster-dark matter halo connection

NASA Astrophysics Data System (ADS)

Boylan-Kolchin, Michael

2017-12-01

I present a simple phenomenological model for the observed linear scaling of the stellar mass in old globular clusters (GCs) with z = 0 halo mass in which the stellar mass in GCs scales linearly with progenitor halo mass at z = 6 above a minimum halo mass for GC formation. This model reproduces the observed MGCs-Mhalo relation at z = 0 and results in a prediction for the minimum halo mass at z = 6 required for hosting one GC: Mmin(z = 6) = 1.07 × 109 M⊙. Translated to z = 0, the mean threshold mass is Mhalo(z = 0) ≈ 2 × 1010 M⊙. I explore the observability of GCs in the reionization era and their contribution to cosmic reionization, both of which depend sensitively on the (unknown) ratio of GC birth mass to present-day stellar mass, ξ. Based on current detections of z ≳ 6 objects with M1500<-17, values of ξ > 10 are strongly disfavoured; this, in turn, has potentially important implications for GC formation scenarios. Even for low values of ξ, some observed high-z galaxies may actually be GCs, complicating estimates of reionization-era galaxy ultraviolet luminosity functions and constraints on dark matter models. GCs are likely important reionization sources if 5 ≲ ξ ≲ 10. I also explore predictions for the fraction of accreted versus in situ GCs in the local Universe and for descendants of systems at the halo mass threshold of GC formation (dwarf galaxies). An appealing feature of the model presented here is the ability to make predictions for GC properties based solely on dark matter halo merger trees.

The immitigable nature of assembly bias: the impact of halo definition on assembly bias

NASA Astrophysics Data System (ADS)

Villarreal, Antonio S.; Zentner, Andrew R.; Mao, Yao-Yuan; Purcell, Chris W.; van den Bosch, Frank C.; Diemer, Benedikt; Lange, Johannes U.; Wang, Kuan; Campbell, Duncan

2017-11-01

Dark matter halo clustering depends not only on halo mass, but also on other properties such as concentration and shape. This phenomenon is known broadly as assembly bias. We explore the dependence of assembly bias on halo definition, parametrized by spherical overdensity parameter, Δ. We summarize the strength of concentration-, shape-, and spin-dependent halo clustering as a function of halo mass and halo definition. Concentration-dependent clustering depends strongly on mass at all Δ. For conventional halo definitions (Δ ∼ 200 - 600 m), concentration-dependent clustering at low mass is driven by a population of haloes that is altered through interactions with neighbouring haloes. Concentration-dependent clustering can be greatly reduced through a mass-dependent halo definition with Δ ∼ 20 - 40 m for haloes with M200 m ≲ 1012 h-1M⊙. Smaller Δ implies larger radii and mitigates assembly bias at low mass by subsuming altered, so-called backsplash haloes into now larger host haloes. At higher masses (M200 m ≳ 1013 h-1M⊙) larger overdensities, Δ ≳ 600 m, are necessary. Shape- and spin-dependent clustering are significant for all halo definitions that we explore and exhibit a relatively weaker mass dependence. Generally, both the strength and the sense of assembly bias depend on halo definition, varying significantly even among common definitions. We identify no halo definition that mitigates all manifestations of assembly bias. A halo definition that mitigates assembly bias based on one halo property (e.g. concentration) must be mass dependent. The halo definitions that best mitigate concentration-dependent halo clustering do not coincide with the expected average splashback radii at fixed halo mass.

Testing approximate predictions of displacements of cosmological dark matter halos

NASA Astrophysics Data System (ADS)

Munari, Emiliano; Monaco, Pierluigi; Koda, Jun; Kitaura, Francisco-Shu; Sefusatti, Emiliano; Borgani, Stefano

2017-07-01

We present a test to quantify how well some approximate methods, designed to reproduce the mildly non-linear evolution of perturbations, are able to reproduce the clustering of DM halos once the grouping of particles into halos is defined and kept fixed. The following methods have been considered: Lagrangian Perturbation Theory (LPT) up to third order, Truncated LPT, Augmented LPT, MUSCLE and COLA. The test runs as follows: halos are defined by applying a friends-of-friends (FoF) halo finder to the output of an N-body simulation. The approximate methods are then applied to the same initial conditions of the simulation, producing for all particles displacements from their starting position and velocities. The position and velocity of each halo are computed by averaging over the particles that belong to that halo, according to the FoF halo finder. This procedure allows us to perform a well-posed test of how clustering of the matter density and halo density fields are recovered, without asking to the approximate method an accurate reconstruction of halos. We have considered the results at z=0,0.5,1, and we have analysed power spectrum in real and redshift space, object-by-object difference in position and velocity, density Probability Distribution Function (PDF) and its moments, phase difference of Fourier modes. We find that higher LPT orders are generally able to better reproduce the clustering of halos, while little or no improvement is found for the matter density field when going to 2LPT and 3LPT. Augmentation provides some improvement when coupled with 2LPT, while its effect is limited when coupled with 3LPT. Little improvement is brought by MUSCLE with respect to Augmentation. The more expensive particle-mesh code COLA outperforms all LPT methods, and this is true even for mesh sizes as large as the inter-particle distance. This test sets an upper limit on the ability of these methods to reproduce the clustering of halos, for the cases when these objects are

Automated Identification of Northern Leaf Blight-Infected Maize Plants from Field Imagery Using Deep Learning.

PubMed

DeChant, Chad; Wiesner-Hanks, Tyr; Chen, Siyuan; Stewart, Ethan L; Yosinski, Jason; Gore, Michael A; Nelson, Rebecca J; Lipson, Hod

2017-11-01

Northern leaf blight (NLB) can cause severe yield loss in maize; however, scouting large areas to accurately diagnose the disease is time consuming and difficult. We demonstrate a system capable of automatically identifying NLB lesions in field-acquired images of maize plants with high reliability. This approach uses a computational pipeline of convolutional neural networks (CNNs) that addresses the challenges of limited data and the myriad irregularities that appear in images of field-grown plants. Several CNNs were trained to classify small regions of images as containing NLB lesions or not; their predictions were combined into separate heat maps, then fed into a final CNN trained to classify the entire image as containing diseased plants or not. The system achieved 96.7% accuracy on test set images not used in training. We suggest that such systems mounted on aerial- or ground-based vehicles can help in automated high-throughput plant phenotyping, precision breeding for disease resistance, and reduced pesticide use through targeted application across a variety of plant and disease categories.

Lithium in halo stars from standard stellar evolution

NASA Technical Reports Server (NTRS)

Deliyannis, Constantine P.; Demarque, Pierre; Kawaler, Steven D.

1990-01-01

A grid has been constructed of theoretical evolution sequences of models for low-metallicity stars from the premain-sequence to the giant branch phases. The grid is used to study the history of surface Li abundance during standard stellar evolution. The Li-7 observations of halo stars by Spite and Spite (1982) and subsequent observations are synthesized to separate the halo stars by age. The theory of surface Li abundance is illustrated by following the evolution of a reference halo star model from the contracting fully convective premain sequence to the giant branch phase. The theoretical models are compared with observed Li abundances. The results show that the halo star lithium abundances can be explained in the context of standard stellar evolution theory using completely standard assumptions and physics.

Chemical Cartography. I. A Carbonicity Map of the Galactic Halo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Young Sun; Kim, Young Kwang; Beers, Timothy C.

We present the first map of carbonicity, [C/Fe], for the halo system of the Milky Way, based on a sample of over 100,000 main-sequence turnoff stars with available spectroscopy from the Sloan Digital Sky Survey. This map, which explores distances up to 15 kpc from the Sun, reveals clear evidence for the dual nature of the Galactic halo, based on the spatial distribution of stellar carbonicity. The metallicity distribution functions of stars in the inner- and outer-halo regions of the carbonicity map reproduce those previously argued to arise from contributions of the inner- and outer-halo populations, with peaks at [Fe/H]more » = −1.5 and −2.2, respectively. From consideration of the absolute carbon abundances for our sample, A (C), we also confirm that the carbon-enhanced metal-poor (CEMP) stars in the outer-halo region exhibit a higher frequency of CEMP-no stars (those with no overabundances of heavy neutron-capture elements) than of CEMP- s stars (those with strong overabundances of elements associated with the s -process), whereas the stars in the inner-halo region exhibit a higher frequency of CEMP- s stars. We argue that the contrast in the behavior of the CEMP-no and CEMP- s fractions in these regions arises from differences in the mass distributions of the mini-halos from which the stars of the inner- and outer-halo populations formed, which gives rise in turn to the observed dichotomy of the Galactic halo.« less

Hierarchical formation of dark matter halos and the free streaming scale

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ishiyama, Tomoaki, E-mail: ishiyama@ccs.tsukuba.ac.jp

2014-06-10

The smallest dark matter halos are formed first in the early universe. According to recent studies, the central density cusp is much steeper in these halos than in larger halos and scales as ρ∝r {sup –(1.5-1.3)}. We present the results of very large cosmological N-body simulations of the hierarchical formation and evolution of halos over a wide mass range, beginning from the formation of the smallest halos. We confirmed early studies that the inner density cusps are steeper in halos at the free streaming scale. The cusp slope gradually becomes shallower as the halo mass increases. The slope of halosmore » 50 times more massive than the smallest halo is approximately –1.3. No strong correlation exists between the inner slope and the collapse epoch. The cusp slope of halos above the free streaming scale seems to be reduced primarily due to major merger processes. The concentration, estimated at the present universe, is predicted to be 60-70, consistent with theoretical models and earlier simulations, and ruling out simple power law mass-concentration relations. Microhalos could still exist in the present universe with the same steep density profiles.« less

The Spin and Orientation of Dark Matter Halos Within Cosmic Filaments

NASA Astrophysics Data System (ADS)

Zhang, Youcai; Yang, Xiaohu; Faltenbacher, Andreas; Springel, Volker; Lin, Weipeng; Wang, Huiyuan

2009-11-01

Clusters, filaments, sheets, and voids are the building blocks of the cosmic web. Forming dark matter halos respond to these different large-scale environments, and this in turn affects the properties of galaxies hosted by the halos. It is therefore important to understand the systematic correlations of halo properties with the morphology of the cosmic web, as this informs both about galaxy formation physics and possible systematics of weak lensing studies. In this study, we present and compare two distinct algorithms for finding cosmic filaments and sheets, a task which is far less well established than the identification of dark matter halos or voids. One method is based on the smoothed dark matter density field and the other uses the halo distributions directly. We apply both techniques to one high-resolution N-body simulation and reconstruct the filamentary/sheet like network of the dark matter density field. We focus on investigating the properties of the dark matter halos inside these structures, in particular, on the directions of their spins and the orientation of their shapes with respect to the directions of the filaments and sheets. We find that both the spin and the major axes of filament halos with masses lsim1013 h -1 M sun are preferentially aligned with the direction of the filaments. The spins and major axes of halos in sheets tend to lie parallel to the sheets. There is an opposite mass dependence of the alignment strength for the spin (negative) and major (positive) axes, i.e. with increasing halo mass the major axis tends to be more strongly aligned with the direction of the filament, whereas the alignment between halo spin and filament becomes weaker with increasing halo mass. The alignment strength as a function of the distance to the most massive node halo indicates that there is a transit large-scale environment impact: from the two-dimensional collapse phase of the filament to the three-dimensional collapse phase of the cluster/node halo at

Effectiveness of a detached‐leaf assay as a proxy for stem inoculations in backcrossed chestnut (Castanea) blight resistance breeding populations

Treesearch

N. R. LaBonte; J.R. McKenna; K. Woeste

2016-01-01

A recently developed detached-leaf blight resistance assay has generated interest because it could reduce the amount of time needed to evaluate backcrossed hybrid trees in the American chestnut blight resistance breeding programme. We evaluated the leaf inoculation technique on a sample of advanced progeny from the Indiana state chapter American Chestnut Foundation...

Unveiling the stellar halo with TGAS

NASA Astrophysics Data System (ADS)

Veljanoski, Jovan; Posti, L.; Helmi, A.; Breddels, M. A.

2018-04-01

The detailed study of the Galactic stellar halo may hold the key to unlocking the assembly history of the Milky Way. Here, we present a machine learning model for selecting metal poor stars from the TGAS catalogue using 5 dimensional phase-space information, coupled with optical and near-IR photometry. We characterise the degree of substructure in our halo sample in the Solar neighbourhood by measuring the velocity correlation function.

The segregation of baryons and dark matter during halo assembly

NASA Astrophysics Data System (ADS)

Liao, Shihong; Gao, Liang; Frenk, Carlos S.; Guo, Qi; Wang, Jie

2017-09-01

The standard galaxy formation theory assumes that baryons and dark matter are initially well mixed before becoming segregated due to radiative cooling. We use non-radiative hydrodynamical simulations to explicitly examine this assumption and find that baryons and dark matter can also be segregated due to different characteristics of gas and dark matter during the buildup of the halo. As a result, baryons in many haloes do not originate from the same Lagrangian region as the dark matter. When using the fraction of corresponding dark matter and gas particles in the initial conditions (the 'paired fraction') as a proxy of the dark matter and gas segregation strength of a halo, on average about 25 per cent of the baryonic and dark matter of the final halo are segregated in the initial conditions. This is at odds with the assumption of the standard galaxy formation model. A consequence of this effect is that the baryons and dark matter of the same halo initially experience different tidal torques and thus their angular momentum vectors are often misaligned. The degree of the misalignment is largely preserved during later halo assembly and can be understood with the tidal torque theory. The result challenges the precision of some semi-analytical approaches that utilize dark matter halo merger trees to infer properties of gas associated with dark matter haloes.

Cold dark matter. 1: The formation of dark halos

NASA Technical Reports Server (NTRS)

Gelb, James M.; Bertschinger, Edmund

1994-01-01

We use numerical simulations of critically closed cold dark matter (CDM) models to study the effects of numerical resolution on observable quantities. We study simulations with up to 256(exp 3) particles using the particle-mesh (PM) method and with up to 144(exp 3) particles using the adaptive particle-particle-mesh (P3M) method. Comparisons of galaxy halo distributions are made among the various simulations. We also compare distributions with observations, and we explore methods for identifying halos, including a new algorithm that finds all particles within closed contours of the smoothed density field surrounding a peak. The simulated halos show more substructure than predicted by the Press-Schechter theory. We are able to rule out all omega = 1 CDM models for linear amplitude sigma(sub 8) greater than or approximately = 0.5 because the simulations produce too many massive halos compared with the observations. The simulations also produce too many low-mass halos. The distribution of halos characterized by their circular velocities for the P3M simulations is in reasonable agreement with the observations for 150 km/s less than or = V(sub circ) less than or = 350 km/s.

Jupiter Ring Halo

NASA Image and Video Library

1998-03-26

A mosaic of four images taken through the clear filter (610 nanometers) of the solid state imaging (CCD) system aboard NASA's Galileo spacecraft on November 8, 1996, at a resolution of approximately 46 kilometers (km) per picture element (pixel) along the rings; however, because the spacecraft was only about 0.5 degrees above the ring plane, the image is highly foreshortened in the vertical direction. The images were obtained when Galileo was in Jupiter's shadow peering back toward the Sun; the ring was approximately 2,300,000 kilometers (km) away. The arc on the far right of the image is produced by sunlight scattered by small particles comprising Jupiter's upper atmospheric haze. The ring also efficiently scatters light, indicating that much of its brightness is due to particles that are microns or less in diameter. Such small particles are believed to have human-scale lifetimes, i.e., very brief compared to the solar system's age. Jupiter's ring system is composed of three parts -- a flat main ring, a lenticular halo interior to the main ring, and the gossamer ring, which lies exterior to the main ring. The near and far arms of Jupiter's main ring extend horizontally across the mosaic, joining together at the ring's ansa, on the far left side of the figure. The near arm of the ring appears to be abruptly truncated close to the planet, at the point where it passes into Jupiter's shadow. A faint mist of particles can be seen above and below the main rings; this vertically extended, toroidal "halo" is unusual in planetary rings, and is probably caused by electromagnetic forces which can push small grains out of the ring plane. Halo material is present across this entire image, implying that it reaches more than 27,000 km above the ring plane. Because of shadowing, the halo is not visible close to Jupiter in the lower right part of the mosaic. In order to accentuate faint features in the image, different brightnesses are shown through color, with the brightest being

Dust-Driven Halos on the Martian South Polar Residual CAP

NASA Astrophysics Data System (ADS)

Becerra, P.; Byrne, S.; Brown, A. J.

2013-12-01

The CO2 ice South Polar Residual Cap (SPRC) on Mars may be a sensitive indicator of inter-annual planetary climate variability. Imaging by HiRISE [1], and CTX [2] found that many scarps and pits in the 'Swiss cheese terrain' [3] of the SPRC exhibited a bright 'halo' around their edges. These halos appeared during Martian southern summer in Mars Year 28 (MY28, [4]), and have been observed in only one of eight mars years for which observations at high enough resolution exist. We hypothesize that the formation of these features is linked to the late-summer global dust storm of MY28 and report on observations and formation models. We surveyed HiRISE, CTX, and CRISM [5] data to constrain the optical properties and composition of the halos, as well as their time of appearance and location within the SPRC. The halos appeared throughout most of the surface area of the SPRC between Ls 280° and 330° in MY28. The widest portions of the halos occurred adjacent to north-facing walls, and the brightest parts adjacent to sun-facing walls, which points to a connection between insolation and halo appearance. CRISM spectral products rule out the presence of water ice as a factor in the halos' appearance. These data also imply larger CO2 ice grain sizes where the bright halos were seen, which are normally associated with lower, rather than higher, albedos [6]. Thus, we also ruled out CO2 ice grain size differences as the main cause for the halos. The remaining possibility is that the halos appeared due to differences in dust content between the terrain adjacent to the pit walls and the surrounding ice. To investigate this we made a Hapke [7] surface reflectance model in which the CO2 ice grain size, dust volumetric content and dust particle size were free parameters. We used the HiRISE and CRISM bandpass coefficients to simulate HiRISE I/F values and CRISM spectra, and attempted to match the HiRISE RED I/F, HiRISE BG/RED color ratio, and the CRISM 1.43 μm band depths. A self

Dark Matter Halos with VIRUS-P

NASA Astrophysics Data System (ADS)

Murphy, Jeremy; Gebhardt, K.

2010-05-01

We present new, two-dimensional stellar kinematic data on several of the most massive galaxies in the local universe. These data were taken with the integral field spectrograph, VIRUS-P, and extend to unprecedented radial distances. Once robust stellar kinematics are in hand, we run orbit-based axisymmetric dynamical models in order to constrain the stellar mass-to-light ratio and dark matter halo parameters. We have run a large set of dynamical models on the second rank galaxy in the Virgo cluster, M87, and find clear evidence for a massive dark matter halo. The two-dimensional stellar kinematics for several of our other targets, all first and second rank galaxies, are also presented. Dark matter halos are known to dominate the mass profile of elliptical galaxies somewhere between one to two effective radii, yet due to the low surface brightness at these radial distances, determining stellar dynamics is technologically challenging. To overcome this, constraints on the dark matter halo are often made with planetary nebulae or globular clusters at large radii. However, as results from different groups have returned contradictory results, it remains unclear whether different dynamical tracers always follow the stellar kinematics. Due to VIRUS-P's large field of view and on-sky fiber diameter, we are able to determine stellar kinematics at radial distances that overlap with other dynamical tracers. Understanding what the dynamics of stars, planetary nebula and globular clusters tell us about both the extent of the dark matter halo profile and the formation histories of the largest elliptical galaxies is a primary science driver for this work.

Deletion and Complementation of the Mating Type (MAT) Locus of the Wheat Head Blight Pathogen Gibberella zeae

PubMed Central

Desjardins, A. E.; Brown, D. W.; Yun, S.-H.; Proctor, R. H.; Lee, T.; Plattner, R. D.; Lu, S.-W.; Turgeon, B. G.

2004-01-01

Gibberella zeae, a self-fertile, haploid filamentous ascomycete, causes serious epidemics of wheat (Triticum aestivum) head blight worldwide and contaminates grain with trichothecene mycotoxins. Anecdotal evidence dating back to the late 19th century indicates that G. zeae ascospores (sexual spores) are a more important inoculum source than are macroconidia (asexual spores), although the fungus can produce both during wheat head blight epidemics. To develop fungal strains to test this hypothesis, the entire mating type (MAT1) locus was deleted from a self-fertile (MAT1-1/MAT1-2), virulent, trichothecene-producing wild-type strain of G. zeae. The resulting MAT deletion (mat1-1/mat1-2) strains were unable to produce perithecia or ascospores and appeared to be unable to mate with the fertile strain from which they were derived. Complementation of a MAT deletion strain by transformation with a copy of the entire MAT locus resulted in recovery of production of perithecia and ascospores. MAT deletion strains and MAT-complemented strains retained the ability to produce macroconidia that could cause head blight, as assessed by direct injection into wheat heads in greenhouse tests. Availability of MAT-null and MAT-complemented strains provides a means to determine the importance of ascospores in the biology of G. zeae and perhaps to identify novel approaches to control wheat head blight. PMID:15066842

Dissipative dark matter halos: The steady state solution

NASA Astrophysics Data System (ADS)

Foot, R.

2018-02-01

Dissipative dark matter, where dark matter particle properties closely resemble familiar baryonic matter, is considered. Mirror dark matter, which arises from an isomorphic hidden sector, is a specific and theoretically constrained scenario. Other possibilities include models with more generic hidden sectors that contain massless dark photons [unbroken U (1 ) gauge interactions]. Such dark matter not only features dissipative cooling processes but also is assumed to have nontrivial heating sourced by ordinary supernovae (facilitated by the kinetic mixing interaction). The dynamics of dissipative dark matter halos around rotationally supported galaxies, influenced by heating as well as cooling processes, can be modeled by fluid equations. For a sufficiently isolated galaxy with a stable star formation rate, the dissipative dark matter halos are expected to evolve to a steady state configuration which is in hydrostatic equilibrium and where heating and cooling rates locally balance. Here, we take into account the major cooling and heating processes, and numerically solve for the steady state solution under the assumptions of spherical symmetry, negligible dark magnetic fields, and that supernova sourced energy is transported to the halo via dark radiation. For the parameters considered, and assumptions made, we were unable to find a physically realistic solution for the constrained case of mirror dark matter halos. Halo cooling generally exceeds heating at realistic halo mass densities. This problem can be rectified in more generic dissipative dark matter models, and we discuss a specific example in some detail.

Stellar-to-halo mass relation of cluster galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Niemiec, Anna; Jullo, Eric; Limousin, Marceau

In the formation of galaxy groups and clusters, the dark matter haloes containing satellite galaxies are expected to be tidally stripped in gravitational interactions with the host. We use galaxy-galaxy weak lensing to measure the average mass of dark matter haloes of satellite galaxies as a function of projected distance to the centre of the host, since stripping is expected to be greater for satellites closer to the centre of the cluster. We further classify the satellites according to their stellar mass: assuming that the stellar component of the galaxy is less disrupted by tidal stripping, stellar mass can bemore » used as a proxy of the infall mass. We study the stellar to halo mass relation of satellites as a function of the cluster-centric distance to measure tidal stripping. We use the shear catalogues of the DES science veri cation archive, the CFHTLenS and the CFHT Stripe 82 surveys, and we select satellites from the redMaPPer catalogue of clusters. For galaxies located in the outskirts of clusters, we nd a stellar to halo mass relation in good agreement with the theoretical expectations from Moster, Naab & White (2013) for central galaxies. In the centre of the cluster, we nd that this relation is shifted to smaller halo mass for a given stellar mass. We interpret this nding as further evidence for tidal stripping of dark matter haloes in high density environments.« less

Stellar-to-halo mass relation of cluster galaxies

DOE PAGES

Niemiec, Anna; Jullo, Eric; Limousin, Marceau; ...

2017-07-04

In the formation of galaxy groups and clusters, the dark matter haloes containing satellite galaxies are expected to be tidally stripped in gravitational interactions with the host. We use galaxy-galaxy weak lensing to measure the average mass of dark matter haloes of satellite galaxies as a function of projected distance to the centre of the host, since stripping is expected to be greater for satellites closer to the centre of the cluster. We further classify the satellites according to their stellar mass: assuming that the stellar component of the galaxy is less disrupted by tidal stripping, stellar mass can bemore » used as a proxy of the infall mass. We study the stellar to halo mass relation of satellites as a function of the cluster-centric distance to measure tidal stripping. We use the shear catalogues of the DES science veri cation archive, the CFHTLenS and the CFHT Stripe 82 surveys, and we select satellites from the redMaPPer catalogue of clusters. For galaxies located in the outskirts of clusters, we nd a stellar to halo mass relation in good agreement with the theoretical expectations from Moster, Naab & White (2013) for central galaxies. In the centre of the cluster, we nd that this relation is shifted to smaller halo mass for a given stellar mass. We interpret this nding as further evidence for tidal stripping of dark matter haloes in high density environments.« less

Stellar Velocity Dispersion: Linking Quiescent Galaxies to Their Dark Matter Halos

NASA Astrophysics Data System (ADS)

Zahid, H. Jabran; Sohn, Jubee; Geller, Margaret J.

2018-06-01

We analyze the Illustris-1 hydrodynamical cosmological simulation to explore the stellar velocity dispersion of quiescent galaxies as an observational probe of dark matter halo velocity dispersion and mass. Stellar velocity dispersion is proportional to dark matter halo velocity dispersion for both central and satellite galaxies. The dark matter halos of central galaxies are in virial equilibrium and thus the stellar velocity dispersion is also proportional to dark matter halo mass. This proportionality holds even when a line-of-sight aperture dispersion is calculated in analogy to observations. In contrast, at a given stellar velocity dispersion, the dark matter halo mass of satellite galaxies is smaller than virial equilibrium expectations. This deviation from virial equilibrium probably results from tidal stripping of the outer dark matter halo. Stellar velocity dispersion appears insensitive to tidal effects and thus reflects the correlation between stellar velocity dispersion and dark matter halo mass prior to infall. There is a tight relation (≲0.2 dex scatter) between line-of-sight aperture stellar velocity dispersion and dark matter halo mass suggesting that the dark matter halo mass may be estimated from the measured stellar velocity dispersion for both central and satellite galaxies. We evaluate the impact of treating all objects as central galaxies if the relation we derive is applied to a statistical ensemble. A large fraction (≳2/3) of massive quiescent galaxies are central galaxies and systematic uncertainty in the inferred dark matter halo mass is ≲0.1 dex thus simplifying application of the simulation results to currently available observations.

New halo formation mechanism at the KEK compact energy recovery linac

NASA Astrophysics Data System (ADS)

Tanaka, Olga; Nakamura, Norio; Shimada, Miho; Miyajima, Tsukasa; Ueda, Akira; Obina, Takashi; Takai, Ryota

2018-02-01

The beam halo mitigation is a very important challenge for reliable and safe operation of a high-energy machine. A systematic beam halo study was conducted at the KEK compact energy recovery linac (cERL) since non-negligible beam loss was observed in the recirculation loop during a common operation. We found that the beam loss can be avoided by making use of the collimation system. Beam halo measurements have demonstrated the presence of vertical beam halos at multiple locations in the beam line (except the region near the electron gun). Based on these observations, we made a conjecture that the transverse beam halo is attributed to the longitudinal bunch tail arising at the photocathode. The transfer of particles from the longitudinal space to a transverse halo may have been observed and studied in other machines, considering nonlinear effects as their causes. However, our study demonstrates a new unique halo formation mechanism, in which a transverse beam halo can be generated by a longitudinal bunch tail due to transverse rf kicks from the accelerating (monopole) fields of the radio-frequency cavities. This halo formation occurs when nonrelativistic particles enter the cavities with a transverse offset, even if neither nonlinear optics nor nonlinear beam effects are present. A careful realignment of the injector system will mitigate the present halo. Another possible cure is to reduce the bunch tails by changing the photocathode material from the present GaAs to a multi-alkali that is known to have a shorter longitudinal tail.

Testing approximate predictions of displacements of cosmological dark matter halos

DOE Office of Scientific and Technical Information (OSTI.GOV)

Munari, Emiliano; Monaco, Pierluigi; Borgani, Stefano

We present a test to quantify how well some approximate methods, designed to reproduce the mildly non-linear evolution of perturbations, are able to reproduce the clustering of DM halos once the grouping of particles into halos is defined and kept fixed. The following methods have been considered: Lagrangian Perturbation Theory (LPT) up to third order, Truncated LPT, Augmented LPT, MUSCLE and COLA. The test runs as follows: halos are defined by applying a friends-of-friends (FoF) halo finder to the output of an N-body simulation. The approximate methods are then applied to the same initial conditions of the simulation, producing formore » all particles displacements from their starting position and velocities. The position and velocity of each halo are computed by averaging over the particles that belong to that halo, according to the FoF halo finder. This procedure allows us to perform a well-posed test of how clustering of the matter density and halo density fields are recovered, without asking to the approximate method an accurate reconstruction of halos. We have considered the results at z =0,0.5,1, and we have analysed power spectrum in real and redshift space, object-by-object difference in position and velocity, density Probability Distribution Function (PDF) and its moments, phase difference of Fourier modes. We find that higher LPT orders are generally able to better reproduce the clustering of halos, while little or no improvement is found for the matter density field when going to 2LPT and 3LPT. Augmentation provides some improvement when coupled with 2LPT, while its effect is limited when coupled with 3LPT. Little improvement is brought by MUSCLE with respect to Augmentation. The more expensive particle-mesh code COLA outperforms all LPT methods, and this is true even for mesh sizes as large as the inter-particle distance. This test sets an upper limit on the ability of these methods to reproduce the clustering of halos, for the cases when these

Revisiting Scaling Relations for Giant Radio Halos in Galaxy Clusters

NASA Technical Reports Server (NTRS)

Cassano, R.; Ettori, S.; Brunetti, G.; Giacintucci, S.; Pratt, G. W.; Venturi, T.; Kale, R.; Dolag, K.; Markevitch, Maxim L.

2013-01-01

Many galaxy clusters host megaparsec-scale radio halos, generated by ultrarelativistic electrons in the magnetized intracluster medium. Correlations between the synchrotron power of radio halos and the thermal properties of the hosting clusters were established in the last decade, including the connection between the presence of a halo and cluster mergers. The X-ray luminosity and redshift-limited Extended GMRT Radio Halo Survey provides a rich and unique dataset for statistical studies of the halos. We uniformly analyze the radio and X-ray data for the GMRT cluster sample, and use the new Planck Sunyaev-Zel'dovich (SZ) catalog to revisit the correlations between the power of radio halos and the thermal properties of galaxy clusters. We find that the radio power at 1.4 GHz scales with the cluster X-ray (0.1-2.4 keV) luminosity computed within R(sub 500) as P(sub 1.4) approx. L(2.1+/-0.2) - 500). Our bigger and more homogenous sample confirms that the X-ray luminous (L(sub 500) > 5 × 10(exp 44) erg/s)) clusters branch into two populations-radio halos lie on the correlation, while clusters without radio halos have their radio upper limits well below that correlation. This bimodality remains if we excise cool cores from the X-ray luminosities. We also find that P(sub 1.4) scales with the cluster integrated SZ signal within R(sub 500), measured by Planck, as P(sub 1.4) approx. Y(2.05+/-0.28) - 500), in line with previous findings. However, contrary to previous studies that were limited by incompleteness and small sample size, we find that "SZ-luminous" Y(sub 500) > 6×10(exp -5) Mpc(exp 2) clusters show a bimodal behavior for the presence of radio halos, similar to that in the radio-X-ray diagram. Bimodality of both correlations can be traced to clusters dynamics, with radio halos found exclusively in merging clusters. These results confirm the key role of mergers for the origin of giant radio halos, suggesting that they trigger the relativistic particle acceleration.

Galaxy halo formation in the absence of violent relaxation and a universal density profile of the halo center

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baushev, A. N., E-mail: baushev@gmail.com; Institut für Physik und Astronomie, Universität Potsdam, D-14476 Potsdam-Golm

2014-05-01

While N-body simulations testify to a cuspy profile of the central region of dark matter halos, observations favor a shallow, cored density profile of the central region of at least some spiral galaxies and dwarf spheroidals. We show that a central profile, very close to the observed one, inevitably forms in the center of dark matter halos if we make a supposition about a moderate energy relaxation of the system during the halo formation. If we assume the energy exchange between dark matter particles during the halo collapse is not too intensive, the profile is universal: it depends almost notmore » at all on the properties of the initial perturbation and is very akin, but not identical, to the Einasto profile with a small Einasto index n ∼ 0.5. We estimate the size of the 'central core' of the distribution, i.e., the extent of the very central region with a respectively gentle profile, and show that the cusp formation is unlikely, even if the dark matter is cold. The obtained profile is in good agreement with observational data for at least some types of galaxies but clearly disagrees with N-body simulations.« less

The cold-induced defensin TAD1 confers resistance against snow mold and Fusarium head blight in transgenic wheat.

PubMed

Sasaki, Kentaro; Kuwabara, Chikako; Umeki, Natsuki; Fujioka, Mari; Saburi, Wataru; Matsui, Hirokazu; Abe, Fumitaka; Imai, Ryozo

2016-06-20

TAD1 (Triticum aestivum defensin 1) is induced during cold acclimation in winter wheat and encodes a plant defensin with antimicrobial activity. In this study, we demonstrated that recombinant TAD1 protein inhibits hyphal growth of the snow mold fungus, Typhula ishikariensis in vitro. Transgenic wheat plants overexpressing TAD1 were created and tested for resistance against T. ishikariensis. Leaf inoculation assays revealed that overexpression of TAD1 confers resistance against the snow mold. In addition, the TAD1-overexpressors showed resistance against Fusarium graminearum, which causes Fusarium head blight, a devastating disease in wheat and barley. These results indicate that TAD1 is a candidate gene to improve resistance against multiple fungal diseases in cereal crops. Copyright © 2016 Elsevier B.V. All rights reserved.

Co-formation of the disc and the stellar halo

NASA Astrophysics Data System (ADS)

Belokurov, V.; Erkal, D.; Evans, N. W.; Koposov, S. E.; Deason, A. J.

2018-07-01

Using a large sample of main sequence stars with 7D measurements supplied by Gaia and SDSS, we study the kinematic properties of the local (within ˜10 kpc from the Sun) stellar halo. We demonstrate that the halo's velocity ellipsoid evolves strongly with metallicity. At the low-[Fe/H] end, the orbital anisotropy (the amount of motion in the radial direction compared with the tangential one) is mildly radial, with 0.2 <β< 0.4. For stars with [Fe/H] > -1.7, however, we measure extreme values of β˜ 0.9. Across the metallicity range considered, namely-3 < [Fe/H] < -1, the stellar halo's spin is minimal, at the level of 20< \\bar{v}_{θ }(kms^{-1}) < 30. Using a suite of cosmological zoom-in simulations of halo formation, we deduce that the observed acute anisotropy is inconsistent with the continuous accretion of dwarf satellites. Instead, we argue, the stellar debris in the inner halo was deposited in a major accretion event by a satellite with Mvir > 1010M⊙ around the epoch of the Galactic disc formation, between 8 and 11 Gyr ago. The radical halo anisotropy is the result of the dramatic radialization of the massive progenitor's orbit, amplified by the action of the growing disc.

Improving fast generation of halo catalogues with higher order Lagrangian perturbation theory

NASA Astrophysics Data System (ADS)

Munari, Emiliano; Monaco, Pierluigi; Sefusatti, Emiliano; Castorina, Emanuele; Mohammad, Faizan G.; Anselmi, Stefano; Borgani, Stefano

2017-03-01

We present the latest version of PINOCCHIO, a code that generates catalogues of dark matter haloes in an approximate but fast way with respect to an N-body simulation. This code version implements a new on-the-fly production of halo catalogue on the past light cone with continuous time sampling, and the computation of particle and halo displacements are extended up to third-order Lagrangian perturbation theory (LPT), in contrast with previous versions that used Zel'dovich approximation. We run PINOCCHIO on the same initial configuration of a reference N-body simulation, so that the comparison extends to the object-by-object level. We consider haloes at redshifts 0 and 1, using different LPT orders either for halo construction or to compute halo final positions. We compare the clustering properties of PINOCCHIO haloes with those from the simulation by computing the power spectrum and two-point correlation function in real and redshift space (monopole and quadrupole), the bispectrum and the phase difference of halo distributions. We find that 2LPT and 3LPT give noticeable improvement. 3LPT provides the best agreement with N-body when it is used to displace haloes, while 2LPT gives better results for constructing haloes. At the highest orders, linear bias is typically recovered at a few per cent level. In Fourier space and using 3LPT for halo displacements, the halo power spectrum is recovered to within 10 per cent up to kmax ∼ 0.5 h Mpc-1. The results presented in this paper have interesting implications for the generation of large ensemble of mock surveys for the scientific exploitation of data from big surveys.

The Circumgalactic Medium in Massive Halos

NASA Astrophysics Data System (ADS)

Chen, Hsiao-Wen

This chapter presents a review of the current state of knowledge on the cool (T ˜ 104 K) halo gas content around massive galaxies at z ≈ 0. 2-2. Over the last decade, significant progress has been made in characterizing the cool circumgalactic gas in massive halos of M h ≈ 1012-14 M⊙ at intermediate redshifts using absorption spectroscopy. Systematic studies of halo gas around massive galaxies beyond the nearby universe are made possible by large spectroscopic samples of galaxies and quasars in public archives. In addition to accurate and precise constraints for the incidence of cool gas in massive halos, detailed characterizations of gas kinematics and chemical compositions around massive quiescent galaxies at z ≈ 0. 5 have also been obtained. Combining all available measurements shows that infalling clouds from external sources are likely the primary source of cool gas detected at halos and quasar bolometric luminosity remains a puzzle. Combining absorption-line studies with spatially resolved emission measurements of both gas and galaxies is the necessary next step to address remaining questions.

Impact of Neutrinos on Dark Matter Halo Environment

NASA Astrophysics Data System (ADS)

Court, Travis; Villaescusa-Navarro, Francisco

2018-01-01

The spatial clustering of galaxies is commonly used to infer the shape of the matter power spectrum and therefore to place constraints on the value of the cosmological parameters. In order to extract the maximum information from galaxy surveys it is required to provide accurate theoretical predictions. The first step to model galaxy clustering is to understand the spatial distribution of the structures where they reside: dark matter halos. I will show that the clustering of halos does not depend only on mass, but on other quantities like local matter overdensity. I will point out that halo clustering is also sensitive to the local overdensity of the cosmic neutrino background. I will show that splitting halos according to neutrino overdensity induces a very large scale-dependence bias, an effect that may lead to a new technique to constraint the sum of the neutrino masses.

Summary of the 2014 Beam-Halo Monitoring Workshop

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fisher, Alan

2015-09-25

Understanding and controlling beam halo is important for high-intensity hadron accelerators, for high-brightness electron linacs, and for low-emittance light sources. This can only be achieved by developing suitable diagnostics. The main challenge faced by such instrumentation is the high dynamic range needed to observe the halo in the presence of an intense core. In addition, measurements must often be made non-invasively. This talk summarizes the one-day workshop on Beam-Halo Monitoring that was held at SLAC on September 19 last year, immediately following IBIC 2014 in Monterey. Workshop presentations described invasive techniques using wires, screens, or crystal collimators, and non-invasive measurementsmore » with gas or scattered electrons. Talks on optical methods showed the close links between observing halo and astronomical problems like observing the solar corona or directly observing a planet orbiting another star.« less

Search for and analysis of radioactive halos in lunar material

NASA Technical Reports Server (NTRS)

Gentry, R. V.

1976-01-01

The lunar halo search was conducted because halos in terrestrial minerals serve as pointers to localized radioactivity, and make possible analytical studies on the problems of isotopic dating and mode of crystallization of the host mineral. Ancillary studies were conducted on terrestrial halos and on certain samples of special origin such as tektites and meteorites.

Epidemiological study of hazelnut bacterial blight in central Italy by using laboratory analysis and geostatistics.

PubMed

Lamichhane, Jay Ram; Fabi, Alfredo; Ridolfi, Roberto; Varvaro, Leonardo

2013-01-01

Incidence of Xanthomonas arboricola pv. corylina, the causal agent of hazelnut bacterial blight, was analyzed spatially in relation to the pedoclimatic factors. Hazelnut grown in twelve municipalities situated in the province of Viterbo, central Italy was studied. A consistent number of bacterial isolates were obtained from the infected tissues of hazelnut collected in three years (2010-2012). The isolates, characterized by phenotypic tests, did not show any difference among them. Spatial patterns of pedoclimatic data, analyzed by geostatistics showed a strong positive correlation of disease incidence with higher values of rainfall, thermal shock and soil nitrogen; a weak positive correlation with soil aluminium content and a strong negative correlation with the values of Mg/K ratio. No correlation of the disease incidence was found with soil pH. Disease incidence ranged from very low (<1%) to very high (almost 75%) across the orchards. Young plants (4-year old) were the most affected by the disease confirming a weak negative correlation of the disease incidence with plant age. Plant cultivars did not show any difference in susceptibility to the pathogen. Possible role of climate change on the epidemiology of the disease is discussed. Improved management practices are recommended for effective control of the disease.

Epidemiological Study of Hazelnut Bacterial Blight in Central Italy by Using Laboratory Analysis and Geostatistics

PubMed Central

Lamichhane, Jay Ram; Fabi, Alfredo; Ridolfi, Roberto; Varvaro, Leonardo

2013-01-01

Incidence of Xanthomonas arboricola pv. corylina, the causal agent of hazelnut bacterial blight, was analyzed spatially in relation to the pedoclimatic factors. Hazelnut grown in twelve municipalities situated in the province of Viterbo, central Italy was studied. A consistent number of bacterial isolates were obtained from the infected tissues of hazelnut collected in three years (2010–2012). The isolates, characterized by phenotypic tests, did not show any difference among them. Spatial patterns of pedoclimatic data, analyzed by geostatistics showed a strong positive correlation of disease incidence with higher values of rainfall, thermal shock and soil nitrogen; a weak positive correlation with soil aluminium content and a strong negative correlation with the values of Mg/K ratio. No correlation of the disease incidence was found with soil pH. Disease incidence ranged from very low (<1%) to very high (almost 75%) across the orchards. Young plants (4-year old) were the most affected by the disease confirming a weak negative correlation of the disease incidence with plant age. Plant cultivars did not show any difference in susceptibility to the pathogen. Possible role of climate change on the epidemiology of the disease is discussed. Improved management practices are recommended for effective control of the disease. PMID:23424654

Development of molecular markers for breeding for disease resistant crops

USDA-ARS?s Scientific Manuscript database

Rice blast disease caused by the filamentous ascomycetes fungus Magnaporthe oryzae and sheath blight disease caused by the soil borne fungus Rhizocotonia solani are the two major rice diseases that threaten stable rice production in the USA and worldwide. These two diseases have been managed with a ...

Solar Radiation Measurements Onboard the Research Aircraft HALO

NASA Astrophysics Data System (ADS)

Lohse, I.; Bohn, B.; Werner, F.; Ehrlich, A.; Wendisch, M.

2014-12-01

Airborne measurements of the separated upward and downward components of solar spectral actinic flux densities for the determination of photolysis frequencies and of upward nadir spectral radiance were performed with the HALO Solar Radiation (HALO-SR) instrument package onboard the High Altitude and Long Range Research Aircraft (HALO). The instrumentation of HALO-SR is characterized and first measurement data from the Next-generation Aircraft Remote-Sensing for Validation Studies (NARVAL) campaigns in 2013 and 2014 are presented. The measured data are analyzed in the context of the retrieved microphysical and optical properties of clouds which were observed underneath the aircraft. Detailed angular sensitivities of the two optical actinic flux receivers were determined in the laboratory. The effects of deviations from the ideal response are investigated using radiative transfer calculations of atmospheric radiance distributions under various atmospheric conditions and different ground albedos. Corresponding correction factors are derived. Example photolysis frequencies are presented, which were sampled in the free troposphere and lower stratosphere over the Atlantic Ocean during the 2013/14 HALO NARVAL campaigns. Dependencies of photolysis frequencies on cloud cover, flight altitude and wavelength range of the photolysis process are investigated. Calculated actinic flux densities in the presence of clouds benefit from the measured spectral radiances. Retrieved cloud optical thicknesses and effective droplet radii are used as model input for the radiative transfer calculations. By comparison with the concurrent measurements of actinic flux densities the retrieval approach is validated. Acknowledgements: Funding by the Deutsche Forschungsgemeinschaft within the priority program HALO (BO 1580/4-1, WE 1900/21-1) is gratefully acknowledged.

Biosynthesis of the antimetabolite 6-thioguanine in Erwinia amylovora plays a key role in fire blight pathogenesis.

PubMed

Coyne, Sébastien; Chizzali, Cornelia; Khalil, Mohammed N A; Litomska, Agnieszka; Richter, Klaus; Beerhues, Ludger; Hertweck, Christian

2013-09-27

Sulfur for fire: The molecular basis for the biosynthesis of the antimetabolite 6-thioguanine (6TG) was unveiled in Erwinia amylovora, the causative agent of fire blight. Bioinformatics, heterologous pathway reconstitution in E. coli, and mutational analyses indicate that the protein YcfA mediates guanine thionation in analogy to 2-thiouridylase. Assays in planta and in cell cultures reveal for the first time a crucial role of 6TG in fire blight pathogenesis. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Using barley genomics to develop Fusarium head blight resistant wheat and barley

USDA-ARS?s Scientific Manuscript database

Fusarium head blight, caused by Fusarium graminearum, is a major problem for wheat and barley growers. During infection, F. graminearum produces trichothecene mycotoxins (e.g., deoxynivalenol or DON) that increases fungal virulence and reduces grain quality and yield. Previous work in Arabidopsis sh...

Effective Dark Matter Halo Catalog in f(R) Gravity.

PubMed

He, Jian-Hua; Hawken, Adam J; Li, Baojiu; Guzzo, Luigi

2015-08-14

We introduce the idea of an effective dark matter halo catalog in f(R) gravity, which is built using the effective density field. Using a suite of high resolution N-body simulations, we find that the dynamical properties of halos, such as the distribution of density, velocity dispersion, specific angular momentum and spin, in the effective catalog of f(R) gravity closely mimic those in the cold dark matter model with a cosmological constant (ΛCDM). Thus, when using effective halos, an f(R) model can be viewed as a ΛCDM model. This effective catalog therefore provides a convenient way for studying the baryonic physics, the galaxy halo occupation distribution and even semianalytical galaxy formation in f(R) cosmologies.

Characterizing heterogeneity of disease incidence in a spatial hierarchy: a case study from a decade of observations of fusarium head blight of wheat.

PubMed

Kriss, A B; Paul, P A; Madden, L V

2012-09-01

A multilevel analysis of heterogeneity of disease incidence was conducted based on observations of Fusarium head blight (caused by Fusarium graminearum) in Ohio during the 2002-11 growing seasons. Sampling consisted of counting the number of diseased and healthy wheat spikes per 0.3 m of row at 10 sites (about 30 m apart) in a total of 67 to 159 sampled fields in 12 to 32 sampled counties per year. Incidence was then determined as the proportion of diseased spikes at each site. Spatial heterogeneity of incidence among counties, fields within counties, and sites within fields and counties was characterized by fitting a generalized linear mixed model to the data, using a complementary log-log link function, with the assumption that the disease status of spikes was binomially distributed conditional on the effects of county, field, and site. Based on the estimated variance terms, there was highly significant spatial heterogeneity among counties and among fields within counties each year; magnitude of the estimated variances was similar for counties and fields. The lowest level of heterogeneity was among sites within fields, and the site variance was either 0 or not significantly greater than 0 in 3 of the 10 years. Based on the variances, the intracluster correlation of disease status of spikes within sites indicated that spikes from the same site were somewhat more likely to share the same disease status relative to spikes from other sites, fields, or counties. The estimated best linear unbiased predictor (EBLUP) for each county was determined, showing large differences across the state in disease incidence (as represented by the link function of the estimated probability that a spike was diseased) but no consistency between years for the different counties. The effects of geographical location, corn and wheat acreage per county, and environmental conditions on the EBLUP for each county were not significant in the majority of years.

Comparison of two laboratory-based systems for evaluation of halos in intraocular lenses

PubMed Central

Alexander, Elsinore; Wei, Xin; Lee, Shinwook

2018-01-01

Purpose Multifocal intraocular lenses (IOLs) can be associated with unwanted visual phenomena, including halos. Predicting potential for halos is desirable when designing new multifocal IOLs. Halo images from 6 IOL models were compared using the Optikos modulation transfer function bench system and a new high dynamic range (HDR) system. Materials and methods One monofocal, 1 extended depth of focus, and 4 multifocal IOLs were evaluated. An off-the-shelf optical bench was used to simulate a distant (>50 m) car headlight and record images. A custom HDR system was constructed using an imaging photometer to simulate headlight images and to measure quantitative halo luminance data. A metric was developed to characterize halo luminance properties. Clinical relevance was investigated by correlating halo measurements to visual outcomes questionnaire data. Results The Optikos system produced halo images useful for visual comparisons; however, measurements were relative and not quantitative. The HDR halo system provided objective and quantitative measurements used to create a metric from the area under the curve (AUC) of the logarithmic normalized halo profile. This proposed metric differentiated between IOL models, and linear regression analysis found strong correlations between AUC and subjective clinical ratings of halos. Conclusion The HDR system produced quantitative, preclinical metrics that correlated to patients’ subjective perception of halos. PMID:29503526

Bose-Einstein condensate haloes embedded in dark energy

NASA Astrophysics Data System (ADS)

Membrado, M.; Pacheco, A. F.

2018-04-01

Context. We have studied clusters of self-gravitating collisionless Newtonian bosons in their ground state and in the presence of the cosmological constant to model dark haloes of dwarf spheroidal (dSph) galaxies. Aim. We aim to analyse the influence of the cosmological constant on the structure of these systems. Observational data of Milky Way dSph galaxies allow us to estimate the boson mass. Methods: We obtained the energy of the ground state of the cluster in the Hartree approximation by solving a variational problem in the particle density. We have also developed and applied the virial theorem. Dark halo models were tested in a sample of 19 galaxies. Galaxy radii, 3D deprojected half-light radii, mass enclosed within them, and luminosity-weighted averages of the square of line-of-sight velocity dispersions are used to estimate the particle mass. Results: Cosmological constant repulsive effects are embedded in one parameter ξ. They are appreciable for ξ > 10-5. Bound structures appear for ξ ≤ ξc = 1.65 × 10-4, what imposes a lower bound for cluster masses as a function of the particle mass. In principle, these systems present tunnelling through a potential barrier; however, after estimating their mean lifes, we realize that their existence is not affected by the age of the Universe. When Milky Way dSph galaxies are used to test the model, we obtain 3.5-1.0+1.3 × 10-22 eV for the particle mass and a lower limit of 5.1-2.8+2.2 × 106 M⊙ for bound haloes. Conclusions: Our estimation for the boson mass is in agreement with other recent results which use different methods. From our particle mass estimation, the treated dSph galaxies would present dark halo masses 5-11 ×107 M⊙. With these values, they would not be affected by the cosmological constant (ξ < 10-8). However, dark halo masses smaller than 107 M⊙ (ξ > 10-5) would already feel their effects. Our model that includes dark energy allows us to deal with these dark haloes. Assuming quantities

Formation and Maintenance of Galactic Warps in Triaxial Halos

NASA Astrophysics Data System (ADS)

Jeon, M. W.; Kim, S. S.; Ann, H. B.

2008-10-01

We investigate the evolution of the self-gravitating disk in a fixed axisymmetric halo with a torus of late cosmic infall that is tilted relative to the initial disk. This is an extension to the study by Shen & Sellwood (2006). We find that the magnitude of the warp is suppressed by a factor of ˜ 2 when the halo is moderately oblate while the magnitude of the warp periodically oscillates when the halo is moderately prolate.

The bulge-halo conspiracy in massive elliptical galaxies: implications for the stellar initial mass function and halo response to baryonic processes

NASA Astrophysics Data System (ADS)

Dutton, Aaron A.; Treu, Tommaso

2014-03-01

Recent studies have shown that massive elliptical galaxies have total mass density profiles within an effective radius that can be approximated as ρ_tot∝ r^{-γ^', with mean slope <γ'> = 2.08 ± 0.03 and scatter σ _{γ ^' } }=0.16± 0.02. The small scatter of the slope (known as the bulge-halo conspiracy) is not generic in Λ cold dark matter (ΛCDM) based models and therefore contains information about the galaxy formation process. We compute the distribution of γ' for ΛCDM-based models that reproduce the observed correlations between stellar mass, velocity dispersion, and effective radius of early-type galaxies in the Sloan Digital Sky Survey. The models have a range of stellar initial mass functions (IMFs) and dark halo responses to galaxy formation. The observed distribution of γ' is well reproduced by a model with cosmologically motivated but uncontracted dark matter haloes, and a Salpeter-type IMF. Other models are on average ruled out by the data, even though they may happen in individual cases. Models with adiabatic halo contraction (and lighter IMFs) predict too small values of γ'. Models with halo expansion, or mass-follows-light predict too high values of γ'. Our study shows that the non-homologous structure of massive early-type galaxies can be precisely reproduced by ΛCDM models if the IMF is not universal and if mechanisms, such as feedback from active galactic nuclei, or dynamical friction, effectively on average counterbalance the contraction of the halo expected as a result of baryonic cooling.

Universal Dark Halo Scaling Relation for the Dwarf Spheroidal Satellites

NASA Astrophysics Data System (ADS)

Hayashi, Kohei; Ishiyama, Tomoaki; Ogiya, Go; Chiba, Masashi; Inoue, Shigeki; Mori, Masao

2017-07-01

Motivated by a recently found interesting property of the dark halo surface density within a radius, {r}\\max , giving the maximum circular velocity, {V}\\max , we investigate it for dark halos of the Milky Way’s and Andromeda’s dwarf satellites based on cosmological simulations. We select and analyze the simulated subhalos associated with Milky-Way-sized dark halos and find that the values of their surface densities, {{{Σ }}}{V\\max }, are in good agreement with those for the observed dwarf spheroidal satellites even without employing any fitting procedures. Moreover, all subhalos on the small scales of dwarf satellites are expected to obey the universal relation, irrespective of differences in their orbital evolutions, host halo properties, and observed redshifts. Therefore, we find that the universal scaling relation for dark halos on dwarf galaxy mass scales surely exists and provides us with important clues for understanding fundamental properties of dark halos. We also investigate orbital and dynamical evolutions of subhalos to understand the origin of this universal dark halo relation and find that most subhalos evolve generally along the {r}\\max \\propto {V}\\max sequence, even though these subhalos have undergone different histories of mass assembly and tidal stripping. This sequence, therefore, should be the key feature for understanding the nature of the universality of {{{Σ }}}{V\\max }.

Redshift-space distortions with the halo occupation distribution - II. Analytic model

NASA Astrophysics Data System (ADS)

Tinker, Jeremy L.

2007-01-01

We present an analytic model for the galaxy two-point correlation function in redshift space. The cosmological parameters of the model are the matter density Ωm, power spectrum normalization σ8, and velocity bias of galaxies αv, circumventing the linear theory distortion parameter β and eliminating nuisance parameters for non-linearities. The model is constructed within the framework of the halo occupation distribution (HOD), which quantifies galaxy bias on linear and non-linear scales. We model one-halo pairwise velocities by assuming that satellite galaxy velocities follow a Gaussian distribution with dispersion proportional to the virial dispersion of the host halo. Two-halo velocity statistics are a combination of virial motions and host halo motions. The velocity distribution function (DF) of halo pairs is a complex function with skewness and kurtosis that vary substantially with scale. Using a series of collisionless N-body simulations, we demonstrate that the shape of the velocity DF is determined primarily by the distribution of local densities around a halo pair, and at fixed density the velocity DF is close to Gaussian and nearly independent of halo mass. We calibrate a model for the conditional probability function of densities around halo pairs on these simulations. With this model, the full shape of the halo velocity DF can be accurately calculated as a function of halo mass, radial separation, angle and cosmology. The HOD approach to redshift-space distortions utilizes clustering data from linear to non-linear scales to break the standard degeneracies inherent in previous models of redshift-space clustering. The parameters of the occupation function are well constrained by real-space clustering alone, separating constraints on bias and cosmology. We demonstrate the ability of the model to separately constrain Ωm,σ8 and αv in models that are constructed to have the same value of β at large scales as well as the same finger-of-god distortions at

Does the galaxy-halo connection vary with environment?

NASA Astrophysics Data System (ADS)

Dragomir, Radu; Rodríguez-Puebla, Aldo; Primack, Joel R.; Lee, Christoph T.

2018-05-01

(Sub)halo abundance matching (SHAM) assumes that one (sub) halo property, such as mass Mvir or peak circular velocity Vpeak, determines properties of the galaxy hosted in each (sub) halo such as its luminosity or stellar mass. This assumption implies that the dependence of galaxy luminosity functions (GLFs) and the galaxy stellar mass function (GSMF) on environmental density is determined by the corresponding halo density dependence. In this paper, we test this by determining from a Sloan Digital Sky Survey sample the observed dependence with environmental density of the ugriz GLFs and GSMF for all galaxies, and for central and satellite galaxies separately. We then show that the SHAM predictions are in remarkable agreement with these observations, even when the galaxy population is divided between central and satellite galaxies. However, we show that SHAM fails to reproduce the correct dependence between environmental density and g - r colour for all galaxies and central galaxies, although it better reproduces the colour dependence on environmental density of satellite galaxies.

Dissipative dark matter halos: The steady state solution. II.

NASA Astrophysics Data System (ADS)

Foot, R.

2018-05-01

Within the mirror dark matter model and dissipative dark matter models in general, halos around galaxies with active star formation (including spirals and gas-rich dwarfs) are dynamical: they expand and contract in response to heating and cooling processes. Ordinary type II supernovae (SNe) can provide the dominant heat source, which is possible if kinetic mixing interaction exists with strength ɛ ˜10-9- 10-10 . Dissipative dark matter halos can be modeled as a fluid governed by Euler's equations. Around sufficiently isolated and unperturbed galaxies the halo can relax to a steady state configuration, where heating and cooling rates locally balance and hydrostatic equilibrium prevails. These steady state conditions can be solved to derive the physical properties, including the halo density and temperature profiles, for model galaxies. Here, we consider idealized spherically symmetric galaxies within the mirror dark particle model, as in our earlier paper [Phys. Rev. D 97, 043012 (2018), 10.1103/PhysRevD.97.043012], but we assume that the local halo heating in the SN vicinity dominates over radiative sources. With this assumption, physically interesting steady state solutions arise which we compute for a representative range of model galaxies. The end result is a rather simple description of the dark matter halo around idealized spherically symmetric systems, characterized in principle by only one parameter, with physical properties that closely resemble the empirical properties of disk galaxies.

Dark-Matter Halos of Tenuous Galaxies

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2016-03-01

A series of recent deep-imaging surveys has revealed dozens of lurking ultra-diffuse galaxies (UDGs) in nearby galaxy clusters. A new study provides key information to help us understand the origins of these faint giants.What are UDGs?There are three main possibilities for how UDGs galaxies with the sizes of giants, but luminosities no brighter than those of dwarfs formed:They are tidal dwarfs, created in galactic collisions when streams of matter were pulled away from the parent galaxies and halos to form dwarfs.They are descended from normal galaxies and were then altered by tidal interactions with the galaxy cluster.They are ancient remnant systems large galaxies whose gas was swept away, putting an early halt to star formation. The gas removal did not, however, affect their large dark matter halos, which permitted them to survive in the cluster environment.The key to differentiating between these options is to obtain mass measurements for the UDGs how large are their dark matter halos? In a recent study led by Michael Beasley (Institute of Astrophysics of the Canary Islands, University of La Laguna), a team of astronomers has determined a clever approach for measuring these galaxies masses: examine their globular clusters.Masses from Globular ClustersVCC 1287s mass measurements put it outside of the usual halo-mass vs. stellar-mass relationships for nearby galaxies: it has a significantly higher halo mass than is normal, given its stellar mass. [Adapted from Beasley et al. 2016]Beasley and collaborators selected one UDG, VCC 1287, from the Virgo galaxy cluster, and they obtained spectra of the globular clusters around it using the OSIRIS spectrograph on the Great Canary Telescope. They then determined VCC 1287s total halo mass in two ways: first by using the dynamics of the globular clusters, and then by relying on a relation between total globular cluster mass and halo mass.The two masses they found are in good agreement with each other; both are around 80

RAPD markers linked to eastern filbert blight resistance in Corylus avellana

Treesearch

S.A. Mehlenbacher; R.N. Brown; J.W. Davis; H. Chen; N.V. Bassil; D.C. Smith; Thomas L. Kubisiak

2004-01-01

A total of 1,110 decamer primers were screened for RAPD markers linked to a dominant allele in hazelnut (Corylus avellana) that confers resistance to eastern filbert blight caused by Anisogramma anomnala. Twenty RAPD markers linked in coupling, and five markers linked in repulsion, were found. A seedling population was used to...

Ionized haloes in planetary nebulae: new discoveries, literature compilation and basic statistical properties

NASA Astrophysics Data System (ADS)

Corradi, R. L. M.; Schönberner, D.; Steffen, M.; Perinotto, M.

2003-04-01

We present a comprehensive observational study of haloes around planetary nebulae (PNe). Deep Hα+[NII] and/or [OIII] narrow-band images have been obtained for 35 PNe, and faint extended haloes have been newly discovered in the following 10 objects: Cn 1-5, IC 2165, IC 2553, NGC 2792, NGC 2867, NGC 3918, NGC 5979, NGC 6578, PB 4, and possibly IC 1747. New deep images have also been obtained of other known or suspected haloes, including the huge extended emission around NGC 3242 and Sh 2-200. In addition, the literature was searched, and together with the new observations an improved data base containing some 50 PN haloes has been compiled. The halo sample is illustrated in an image atlas contained in this paper, and the original images are made available for use by the scientific community at http://www.ing. iac.es/~rcorradi/HALOES/. The haloes have been classified following the predictions of modern radiation-hydrodynamical simulations that describe the formation and evolution of ionized multiple shells and haloes around PNe. According to the models, the observed haloes have been divided into the following groups: (i) circular or slightly elliptical asymptotic giant branch (AGB) haloes, which contain the signature of the last thermal pulse on the AGB; (ii) highly asymmetrical AGB haloes; (iii) candidate recombination haloes, i.e. limb-brightened extended shells that are expected to be produced by recombination during the late post-AGB evolution, when the luminosity of the central star drops rapidly by a significant factor; (iv) uncertain cases which deserve further study for a reliable classification; (v) non-detections, i.e. PNe in which no halo is found to a level of <~10-3 the peak surface brightness of the inner nebulae. We discuss the properties of the haloes: detection rate, morphology, location of the central stars in the Hertzsprung-Russell diagram, sizes, surface brightness profiles, and kinematical ages. Among the most

Whole-Genome Sequence of Pseudomonas fluorescens EK007-RG4, a Promising Biocontrol Agent against a Broad Range of Bacteria, Including the Fire Blight Bacterium Erwinia amylovora.

PubMed

Habibi, Roghayeh; Tarighi, Saeed; Behravan, Javad; Taheri, Parissa; Kjøller, Annelise Helene; Brejnrod, Asker; Madsen, Jonas Stenløkke; Sørensen, Søren Johannes

2017-03-30

Here, we report the first draft whole-genome sequence of Pseudomonas fluorescens strain EK007-RG4, which was isolated from the phylloplane of a pear tree. P. fluorescens EK007-RG4 displays strong antagonism against Erwinia amylovora , the causal agent for fire blight disease, in addition to several other pathogenic and non-pathogenic bacteria. Copyright © 2017 Habibi et al.

The x ray halo of AM Her

NASA Technical Reports Server (NTRS)

Catura, Richard C.

1993-01-01

The objective of this research was to study the halo surrounding the ROSAT image of the cataclysmic variable AM Her that is formed by scattering of x-rays by interstellar dust grains. AM Her was in a low state of x-ray emission during the 14,400 sec observation and thus an insufficient number of counts were obtained to detect the x-ray halo.

Diseases of Landscape Ornamentals. Slide Script.

ERIC Educational Resources Information Center

Powell, Charles C.; Sydnor, T. Davis

This slide script, part of a series of slide scripts designed for use in vocational agriculture classes, deals with recognizing and controlling diseases found on ornamental landscape plants. Included in the script are narrations for use with a total of 80 slides illustrating various foliar diseases (anthracnose, black spot, hawthorn leaf blight,…

Theoretical relation between halo current-plasma energy displacement/deformation in EAST

NASA Astrophysics Data System (ADS)

Khan, Shahab Ud-Din; Khan, Salah Ud-Din; Song, Yuntao; Dalong, Chen

2018-04-01

In this paper, theoretical model for calculating halo current has been developed. This work attained novelty as no theoretical calculations for halo current has been reported so far. This is the first time to use theoretical approach. The research started by calculating points for plasma energy in terms of poloidal and toroidal magnetic field orientations. While calculating these points, it was extended to calculate halo current and to developed theoretical model. Two cases were considered for analyzing the plasma energy when flows down/upward to the diverter. Poloidal as well as toroidal movement of plasma energy was investigated and mathematical formulations were designed as well. Two conducting points with respect to (R, Z) were calculated for halo current calculations and derivations. However, at first, halo current was established on the outer plate in clockwise direction. The maximum generation of halo current was estimated to be about 0.4 times of the plasma current. A Matlab program has been developed to calculate halo current and plasma energy calculation points. The main objective of the research was to establish theoretical relation with experimental results so as to precautionary evaluate the plasma behavior in any Tokamak.

THE SEGUE K GIANT SURVEY. III. QUANTIFYING GALACTIC HALO SUBSTRUCTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Janesh, William; Morrison, Heather L.; Ma, Zhibo

2016-01-10

We statistically quantify the amount of substructure in the Milky Way stellar halo using a sample of 4568 halo K giant stars at Galactocentric distances ranging over 5–125 kpc. These stars have been selected photometrically and confirmed spectroscopically as K giants from the Sloan Digital Sky Survey’s Sloan Extension for Galactic Understanding and Exploration project. Using a position–velocity clustering estimator (the 4distance) and a model of a smooth stellar halo, we quantify the amount of substructure in the halo, divided by distance and metallicity. Overall, we find that the halo as a whole is highly structured. We also confirm earliermore » work using blue horizontal branch (BHB) stars which showed that there is an increasing amount of substructure with increasing Galactocentric radius, and additionally find that the amount of substructure in the halo increases with increasing metallicity. Comparing to resampled BHB stars, we find that K giants and BHBs have similar amounts of substructure over equivalent ranges of Galactocentric radius. Using a friends-of-friends algorithm to identify members of individual groups, we find that a large fraction (∼33%) of grouped stars are associated with Sgr, and identify stars belonging to other halo star streams: the Orphan Stream, the Cetus Polar Stream, and others, including previously unknown substructures. A large fraction of sample K giants (more than 50%) are not grouped into any substructure. We find also that the Sgr stream strongly dominates groups in the outer halo for all except the most metal-poor stars, and suggest that this is the source of the increase of substructure with Galactocentric radius and metallicity.« less

A Search for a Near-Infrared Halo Around NGC 4565

NASA Technical Reports Server (NTRS)

Uemizu, Kazunori; Bock, James J.; Kawada, Mitsunobu; Lange, Andrew E.; Matsumoto, Toshio; Watabe, Toyoki; Yost, Sarah A.

1998-01-01

We present a near-infrared (3.5-5 micron) search for the integrated emission from low-mass stars and/or brown dwarfs in the halo of the nearby edge-on spiral galaxy NGC 4565. The observation was made with a liquid-helium-cooled rocket-borne telescope using a 256 x 256 InSb array with a pixel scale of 17". Images of NGC 4565 were successfully obtained with sensitivity near the natural background limit. Our search reveals no evidence of a faint halo around the galaxy, in contrast with the previous reports of a halo around NGC 5907. The lower limit of the mass-to-light ratio for the halo of NGC 4565 is 260 (2 delta) in solar units at 3.5-5 microns. This implies that hydrogen-burning stars do not contribute significantly to the mass of the dark halo in NGC 4565.

The Impact of Assembly Bias on the Galaxy Content of Dark Matter Halos

NASA Astrophysics Data System (ADS)

Zehavi, Idit; Contreras, Sergio; Padilla, Nelson; Smith, Nicholas J.; Baugh, Carlton M.; Norberg, Peder

2018-01-01

We study the dependence of the galaxy content of dark matter halos on large-scale environment and halo formation time using semi-analytic galaxy models applied to the Millennium simulation. We analyze subsamples of halos at the extremes of these distributions and measure the occupation functions for the galaxies they host. We find distinct differences among these occupation functions. The main effect with environment is that central galaxies (and in one model, also the satellites) in denser regions start populating lower-mass halos. A similar, but significantly stronger, trend exists with halo age, where early-forming halos are more likely to host central galaxies at lower halo mass. We discuss the origin of these trends and the connection to the stellar mass–halo mass relation. We find that, at fixed halo mass, older halos and to some extent also halos in dense environments tend to host more massive galaxies. Additionally, we see a reverse trend for the occupation of satellite galaxies where early-forming halos have fewer satellites, likely due to having more time for them to merge with the central galaxy. We describe these occupancy variations in terms of the changes in the occupation function parameters, which can aid in constructing realistic mock galaxy samples. Finally, we study the corresponding galaxy auto- and cross-correlation functions of the different samples and elucidate the impact of assembly bias on galaxy clustering. Our results can inform theoretical modeling of galaxy assembly bias and attempts to detect it in the real universe.

ZOMG - I. How the cosmic web inhibits halo growth and generates assembly bias

NASA Astrophysics Data System (ADS)

Borzyszkowski, Mikolaj; Porciani, Cristiano; Romano-Díaz, Emilio; Garaldi, Enrico

2017-07-01

The clustering of dark matter haloes with fixed mass depends on their formation history, an effect known as assembly bias. We use zoom N-body simulations to investigate the origin of this phenomenon. For each halo at redshift z = 0, we determine the time in which the physical volume containing its final mass becomes stable. We consider five examples for which this happens at z ˜ 1.5 and two that do not stabilize by z = 0. The zoom simulations show that early-collapsing haloes do not grow in mass at z = 0 while late-forming ones show a net inflow. The reason is that 'accreting' haloes are located at the nodes of a network of thin filaments feeding them. Conversely, each 'stalled' halo lies within a prominent filament that is thicker than the halo size. Infalling material from the surroundings becomes part of the filament while matter within it recedes from the halo. We conclude that assembly bias originates from quenching halo growth due to tidal forces following the formation of non-linear structures in the cosmic web, as previously conjectured in the literature. Also the internal dynamics of the haloes change: the velocity anisotropy profile is biased towards radial (tangential) orbits in accreting (stalled) haloes. Our findings reveal the cause of the yet unexplained dependence of halo clustering on the anisotropy. Finally, we extend the excursion-set theory to account for these effects. A simple criterion based on the ellipticity of the linear tidal field combined with the spherical-collapse model provides excellent predictions for both classes of haloes.

Galaxy power spectrum in redshift space: Combining perturbation theory with the halo model

NASA Astrophysics Data System (ADS)

Okumura, Teppei; Hand, Nick; Seljak, Uroš; Vlah, Zvonimir; Desjacques, Vincent

2015-11-01

Theoretical modeling of the redshift-space power spectrum of galaxies is crucially important to correctly extract cosmological information from galaxy redshift surveys. The task is complicated by the nonlinear biasing and redshift space distortion (RSD) effects, which change with halo mass, and by the wide distribution of halo masses and their occupations by galaxies. One of the main modeling challenges is the existence of satellite galaxies that have both radial distribution inside the halos and large virial velocities inside halos, a phenomenon known as the Finger-of-God (FoG) effect. We present a model for the redshift-space power spectrum of galaxies in which we decompose a given galaxy sample into central and satellite galaxies and relate different contributions to the power spectrum to 1-halo and 2-halo terms in a halo model. Our primary goal is to ensure that any parameters that we introduce have physically meaningful values, and are not just fitting parameters. For the lowest order 2-halo terms we use the previously developed RSD modeling of halos in the context of distribution function and perturbation theory approach. This term needs to be multiplied by the effect of radial distances and velocities of satellites inside the halo. To this one needs to add the 1-halo terms, which are nonperturbative. We show that the real space 1-halo terms can be modeled as almost constant, with the finite extent of the satellites inside the halo inducing a small k2R2 term over the range of scales of interest, where R is related to the size of the halo given by its halo mass. We adopt a similar model for FoG in redshift space, ensuring that FoG velocity dispersion is related to the halo mass. For FoG k2 type expansions do not work over the range of scales of interest and FoG resummation must be used instead. We test several simple damping functions to model the velocity dispersion FoG effect. Applying the formalism to mock galaxies modeled after the "CMASS" sample of the

Galaxy power spectrum in redshift space: Combining perturbation theory with the halo model

DOE PAGES

Okumura, Teppei; Hand, Nick; Seljak, Uros; ...

2015-11-19

Theoretical modeling of the redshift-space power spectrum of galaxies is crucially important to correctly extract cosmological information from galaxy redshift surveys. The task is complicated by the nonlinear biasing and redshift space distortion (RSD) effects, which change with halo mass, and by the wide distribution of halo masses and their occupations by galaxies. One of the main modeling challenges is the existence of satellite galaxies that have both radial distribution inside the halos and large virial velocities inside halos, a phenomenon known as the Finger-of-God (FoG) effect. We present a model for the redshift-space power spectrum of galaxies in whichmore » we decompose a given galaxy sample into central and satellite galaxies and relate different contributions to the power spectrum to 1-halo and 2-halo terms in a halo model. Our primary goal is to ensure that any parameters that we introduce have physically meaningful values, and are not just fitting parameters. For the lowest order 2-halo terms we use the previously developed RSD modeling of halos in the context of distribution function and perturbation theory approach. This term needs to be multiplied by the effect of radial distances and velocities of satellites inside the halo. To this one needs to add the 1-halo terms, which are nonperturbative. We show that the real space 1-halo terms can be modeled as almost constant, with the finite extent of the satellites inside the halo inducing a small k 2R 2 term over the range of scales of interest, where R is related to the size of the halo given by its halo mass. Furthermore, we adopt a similar model for FoG in redshift space, ensuring that FoG velocity dispersion is related to the halo mass. For FoG k 2 type expansions do not work over the range of scales of interest and FoG resummation must be used instead. We test several simple damping functions to model the velocity dispersion FoG effect. Applying the formalism to mock galaxies modeled after the

Colonization of wheat heads by antagonist Cryptococcus flavescens OH 182.9 when applied alone or in combination with different concentrations of Prosaro® and the effect on Fusarium head blight development in field-grown wheat

USDA-ARS?s Scientific Manuscript database

The significant and consistent reduction of Fusarium head blight (FHB) and deoxynivalenol (DON) contamination of wheat and barley remains elusive though research results indicate that utilizing an integrated pest management approach achieves the greatest level of disease/toxin control. The use of y...

Toward a Combined SAGE II-HALOE Aerosol Climatology: An Evaluation of HALOE Version 19 Stratospheric Aerosol Extinction Coefficient Observations

NASA Technical Reports Server (NTRS)

Thomason, L. W.

2012-01-01

Herein, the Halogen Occultation Experiment (HALOE) aerosol extinction coefficient data is evaluated in the low aerosol loading period after 1996 as the first necessary step in a process that will eventually allow the production of a combined HALOE/SAGE II (Stratospheric Aerosol and Gas Experiment) aerosol climatology of derived aerosol products including surface area density. Based on these analyses, it is demonstrated that HALOE's 3.46 microns is of good quality above 19 km and suitable for scientific applications above that altitude. However, it is increasingly suspect at lower altitudes and should not be used below 17 km under any circumstances after 1996. The 3.40 microns is biased by about 10% throughout the lower stratosphere due to the failure to clear NO2 but otherwise appears to be a high quality product down to 15 km. The 2.45 and 5.26 micron aerosol extinction coefficient measurements are clearly biased and should not be used for scientific applications after the most intense parts of the Pinatubo period. Many of the issues in the aerosol data appear to be related to either the failure to clear some interfering gas species or doing so poorly. For instance, it is clear that the 3.40micronaerosol extinction coefficient measurements can be improved through the inclusion of an NO2 correction and could, in fact, end up as the highest quality overall HALOE aerosol extinction coefficient measurement. It also appears that the 2.45 and 5.26 micron channels may be improved by updating the Upper Atmosphere Pilot Database which is used as a resource for the removal of gas species otherwise not available from direct HALOE measurements. Finally, a simple model to demonstrate the promise of mixed visible/infrared aerosol extinction coefficient ensembles for the retrieval of bulk aerosol properties demonstrates that a combined HALOE/SAGE II aerosol climatology is feasible and may represent a substantial improvement over independently derived data sets.

Pantoea applied genomics to understand and improve biocontrol activity against fire blight

USDA-ARS?s Scientific Manuscript database

Pantoea agglomerans and P. vagans (ex. Erwinia herbicola) are common epiphytes of pome fruit flowers and three strains (E325, P10c, C9-1) have been commercially developed as effective biocontrol products for managing fire blight (Erwinia amylovora). Antibiotics as a standard, reliable chemical optio...

Systematics, Phylogeny and Trichothecene Mycotoxin Potential of Fusarium Head Blight Cereal Pathogens

USDA-ARS?s Scientific Manuscript database

Economically devastating outbreaks and epidemics of Fusarium head blight (FHB) or scab of wheat and barley have occurred worldwide over the past two decades. Although the primary etiological agent of FHB was thought to comprise a single panmictic species, Fusarium graminearum, a series of studies we...

Polymorphic sequence-characterized codominant loci in the chestnut blight fungus, Cryphonectria parasitica

Treesearch

J. E. Davis; Thomas L. Kubisiak; M. G. Milgroom

2005-01-01

Studies on the population biology of the chestnut blight fungus, Cryphonectria parasitica, have previously been carried out with dominant restriction fragment length polymorphism (RFLP) fingerprinting markers. In this study, we described the development of 11 condominant markers from randomly amplified polymorphic DNAs (RAPDs). RAPD fragments were...

DETECTING TRIAXIALITY IN THE GALACTIC DARK MATTER HALO THROUGH STELLAR KINEMATICS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rojas-Nino, Armando; Valenzuela, Octavio; Pichardo, Barbara

Assuming the dark matter halo of the Milky Way to be a non-spherical potential (i.e., triaxial, prolate, oblate), we show how the assembling process of the Milky Way halo may have left long-lasting stellar halo kinematic fossils due to the shape of the dark matter halo. In contrast with tidal streams, which are associated with recent satellite accretion events, these stellar kinematic groups will typically show inhomogeneous chemical and stellar population properties. However, they may be dominated by a single accretion event for certain mass assembling histories. If the detection of these peculiar kinematic stellar groups were confirmed, they wouldmore » be the smoking gun for the predicted triaxiality of dark halos in cosmological galaxy formation scenarios.« less

Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice.

PubMed

Jiang, Chang-Jie; Shimono, Masaki; Maeda, Satoru; Inoue, Haruhiko; Mori, Masaki; Hasegawa, Morifumi; Sugano, Shoji; Takatsuji, Hiroshi

2009-07-01

Fatty acids and their derivatives play important signaling roles in plant defense responses. It has been shown that suppressing a gene for stearoyl acyl carrier protein fatty-acid desaturase (SACPD) enhances the resistance of Arabidopsis (SSI2) and soybean to multiple pathogens. In this study, we present functional analyses of a rice homolog of SSI2 (OsSSI2) in disease resistance of rice plants. A transposon insertion mutation (Osssi2-Tos17) and RNAi-mediated knockdown of OsSSI2 (OsSSI2-kd) reduced the oleic acid (18:1) level and increased that of stearic acid (18:0), indicating that OsSSI2 is responsible for fatty-acid desaturase activity. These plants displayed spontaneous lesion formation in leaf blades, retarded growth, slight increase in endogenous free salicylic acid (SA) levels, and SA/benzothiadiazole (BTH)-specific inducible genes, including WRKY45, a key regulator of SA/BTH-induced resistance, in rice. Moreover, the OsSSI2-kd plants showed markedly enhanced resistance to the blast fungus Magnaporthe grisea and leaf-blight bacteria Xanthomonas oryzae pv. oryzae. These results suggest that OsSSI2 is involved in the negative regulation of defense responses in rice, as are its Arabidopsis and soybean counterparts. Microarray analyses identified 406 genes that were differentially expressed (>or=2-fold) in OsSSI2-kd rice plants compared with wild-type rice and, of these, approximately 39% were BTH responsive. Taken together, our results suggest that induction of SA-responsive genes, including WRKY45, is likely responsible for enhanced disease resistance in OsSSI2-kd rice plants.

PARALLEL HOP: A SCALABLE HALO FINDER FOR MASSIVE COSMOLOGICAL DATA SETS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skory, Stephen; Turk, Matthew J.; Norman, Michael L.

2010-11-15

Modern N-body cosmological simulations contain billions (10{sup 9}) of dark matter particles. These simulations require hundreds to thousands of gigabytes of memory and employ hundreds to tens of thousands of processing cores on many compute nodes. In order to study the distribution of dark matter in a cosmological simulation, the dark matter halos must be identified using a halo finder, which establishes the halo membership of every particle in the simulation. The resources required for halo finding are similar to the requirements for the simulation itself. In particular, simulations have become too extensive to use commonly employed halo finders, suchmore » that the computational requirements to identify halos must now be spread across multiple nodes and cores. Here, we present a scalable-parallel halo finding method called Parallel HOP for large-scale cosmological simulation data. Based on the halo finder HOP, it utilizes message passing interface and domain decomposition to distribute the halo finding workload across multiple compute nodes, enabling analysis of much larger data sets than is possible with the strictly serial or previous parallel implementations of HOP. We provide a reference implementation of this method as a part of the toolkit {sup yt}, an analysis toolkit for adaptive mesh refinement data that include complementary analysis modules. Additionally, we discuss a suite of benchmarks that demonstrate that this method scales well up to several hundred tasks and data sets in excess of 2000{sup 3} particles. The Parallel HOP method and our implementation can be readily applied to any kind of N-body simulation data and is therefore widely applicable.« less

Screening of bacterial antagonists for biological control of Phytophthora blight of pepper.

PubMed

Rajkumar, M; Lee, Wang Hyu; Lee, Kui Jae

2005-01-01

The aim of this study was to assess the potential of bacterial antagonists to control Phytophthora blight of pepper caused by P. capsici using different screening methods. Among a collection of fluorescent pseudomonas isolated from the rhizosphere of pepper, twelve isolates were initially selected based on dual culture assay on potato dextrose agar and corn meal agar. Further, these twelve isolates were screened for the reduction of disease severity caused by P. capsici using detached leaves and seedling assay. Most of the antagonists showed varying levels of antagonism against P. capsici in both detached leaves and seedlings assay. In addition, few isolates increased shoot and root length of pepper in seedling assays. Among them, isolate PS119 showing highest ability to reduce the disease severity in the in vitro seedling assay was found to be the most efficient antagonists against P. capsici in the in vivo biological control tests. These results indicate that the in vitro seedling assay can be used as a rapid and more accurate technique for the selection of promising biocontrol agents against P. capsici. ((c) 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim).

The X-ray halo of an extremely luminous LSB disk galaxy

NASA Technical Reports Server (NTRS)

Weiner, Benjamin J.

2004-01-01

We are continuing to refine our upper limit on emission from halo gas in Malin 2. The upper limit is, of course, below the detected flux, but is made more difficult to quantify by the disk and possible AGN sources. We are also exploring spectral and spatial-size constraints to help separate the sources of emission. On the theory side, more recent work on the X-ray halo luminosity from halo gas leftover from galaxy formation has lowered the prediction for disk galaxies (e.g. Toft et al. 2002, MNRAS, 335, 799). While our upper limit is well below the original prediction, refinements in model have moved the theoretical goalposts, so that the observation may be consistent with newer models. A recent theoretical development, which our observations of Malin 2 appear to support, is that a substantial amount of mass can be accreted onto galaxies without being heated at a virial shock. The previous standard theory was that gas accreting into a halo hits a virial shock and is heated to high temperatures, which could produce X-ray halos in massive galaxies. Recent models show that "smooth accretion" of matter bypasses the virial shocking (Murali e t al. 2002, ApJ, 571, 1; Birnboim & Dekel 2003, MNRAS, 345, 349). Additionally, new hydrodynamical simulations of galaxy mergers by UCSC graduate student T. J. Cox show that hot gas halos can be created by gas blown out from the merger, taking up orbital energy of the merging galaxies (Cox et al. 2004, ApJ, 607, L87). If mergers rather than virial shocking are the origin of hot gas halos, the existence of an X-ray halo should depend more on past merger activity than halo mass. Then it makes sense that elliptical galaxies and poor groups with ellipticals, which are probably formed in mergers, have X-ray gas halos; while a giant, quiescent LSB disk galaxy like Malin 2, which has never suffered a major merger, does not have an X-ray halo. While both the observational expectations and theoretical models have changed since we began this

The Galaxy-Halo Connection in High-redshift Universe: Details and Evolution of Stellar-to-halo Mass Ratios of Lyman Break Galaxies on CFHTLS Deep Fields

NASA Astrophysics Data System (ADS)

Ishikawa, Shogo; Kashikawa, Nobunari; Toshikawa, Jun; Tanaka, Masayuki; Hamana, Takashi; Niino, Yuu; Ichikawa, Kohei; Uchiyama, Hisakazu

2017-05-01

We present the results of clustering analyses of Lyman break galaxies (LBGs) at z˜ 3, 4, and 5 using the final data release of the Canada-France-Hawaii Telescope Legacy Survey (CFHTLS). Deep- and wide-field images of the CFHTLS Deep Survey enable us to obtain sufficiently accurate two-point angular correlation functions to apply a halo occupation distribution analysis. The mean halo masses, calculated as < {M}h> ={10}11.7{--}{10}12.8 {h}-1 {M}⊙ , increase with the stellar-mass limit of LBGs. The threshold halo mass to have a central galaxy, {M}\\min , follows the same increasing trend as the low-z results, whereas the threshold halo mass to have a satellite galaxy, M 1, shows higher values at z=3{--}5 than z=0.5{--}1.5, over the entire stellar mass range. Satellite fractions of dropout galaxies, even at less massive halos, are found to drop sharply, from z = 2 down to less than 0.04, at z=3{--}5. These results suggest that satellite galaxies form inefficiently within dark halos at z=3{--}5, even for less massive satellites with {M}\\star < {10}10 {M}⊙ . We compute stellar-to-halo mass ratios (SHMRs) assuming a main sequence of galaxies, which is found to provide SHMRs consistent with those derived from a spectral energy distribution fitting method. The observed SHMRs are in good agreement with model predictions based on the abundance-matching method, within 1σ confidence intervals. We derive observationally, for the first time, {M}{{h}}{pivot}, which is the halo mass at a peak in the star-formation efficiency, at 3< z< 5, and it shows a small increasing trend with cosmic time at z> 3. In addition, {M}{{h}}{pivot} and its normalization are found to be almost unchanged during 0< z< 5. Our study provides observational evidence that galaxy formation is ubiquitously most efficient near a halo mass of {M}{{h}}˜ {10}12 {M}⊙ over cosmic time.

High-resolution disruption halo current measurements using Langmuir probes in Alcator C-Mod

NASA Astrophysics Data System (ADS)

Tinguely, R. A.; Granetz, R. S.; Berg, A.; Kuang, A. Q.; Brunner, D.; LaBombard, B.

2018-01-01

Halo currents generated during disruptions on Alcator C-Mod have been measured with Langmuir ‘rail’ probes. These rail probes are embedded in a lower outboard divertor module in a closely-spaced vertical (poloidal) array. The dense array provides detailed resolution of the spatial dependence (~1 cm spacing) of the halo current distribution in the plasma scrape-off region with high time resolution (400 kHz digitization rate). As the plasma limits on the outboard divertor plate, the contact point is clearly discernible in the halo current data (as an inversion of current) and moves vertically down the divertor plate on many disruptions. These data are consistent with filament reconstructions of the plasma boundary, from which the edge safety factor of the disrupting plasma can be calculated. Additionally, the halo current ‘footprint’ on the divertor plate is obtained and related to the halo flux width. The voltage driving halo current and the effective resistance of the plasma region through which the halo current flows to reach the probes are also investigated. Estimations of the sheath resistance and halo region resistivity and temperature are given. This information could prove useful for modeling halo current dynamics.

Halo current diagnostic system of experimental advanced superconducting tokamak

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, D. L.; Shen, B.; Sun, Y.

2015-10-15

The design, calibration, and installation of disruption halo current sensors for the Experimental Advanced Superconducting Tokamak are described in this article. All the sensors are Rogowski coils that surround conducting structures, and all the signals are analog integrated. Coils with two different cross-section sizes have been fabricated, and their mutual inductances are calibrated. Sensors have been installed to measure halo currents in several different parts of both the upper divertor (tungsten) and lower divertor (graphite) at several toroidal locations. Initial measurements from disruptions show that the halo current diagnostics are working well.

Biocontrol of Phytophthora Blight and Anthracnose in Pepper by Sequentially Selected Antagonistic Rhizobacteria against Phytophthora capsici.

PubMed

Sang, Mee Kyung; Shrestha, Anupama; Kim, Du-Yeon; Park, Kyungseok; Pak, Chun Ho; Kim, Ki Deok

2013-06-01

We previously developed a sequential screening procedure to select antagonistic bacterial strains against Phytophthora capsici in pepper plants. In this study, we used a modified screening procedure to select effective biocontrol strains against P. capsici; we evaluated the effect of selected strains on Phytophthora blight and anthracnose occurrence and fruit yield in pepper plants under field and plastic house conditions from 2007 to 2009. We selected four potential biocontrol strains (Pseudomonas otitidis YJR27, P. putida YJR92, Tsukamurella tyrosinosolvens YJR102, and Novosphingobium capsulatum YJR107) among 239 bacterial strains. In the 3-year field tests, all the selected strains significantly (P < 0.05) reduced Phytophthora blight without influencing rhizosphere microbial populations; they showed similar or better levels of disease suppressions than in metalaxyl treatment in the 2007 and 2009 tests, but not in the 2008 test. In the 2-year plastic house tests, all the selected strains significantly (P < 0.05) reduced anthracnose incidence in at least one of the test years, but their biocontrol activities were variable. In addition, strains YJR27, YJR92, and YJR102, in certain harvests, increased pepper fruit numbers in field tests and red fruit weights in plastic house tests. Taken together, these results indicate that the screening procedure is rapid and reliable for the selection of potential biocontrol strains against P. capsici in pepper plants. In addition, these selected strains exhibited biocontrol activities against anthracnose, and some of the strains showed plant growth-promotion activities on pepper fruit.

Effect of halo-vest components on stabilizing the injured cervical spine.

PubMed

Ivancic, Paul C; Beauchman, Naseem N; Tweardy, Lisa

2009-01-15

An in vitro biomechanical study. The objectives were to develop a new biofidelic skull-neck-thorax model capable of quantifying motion patterns of the cervical spine in the presence of a halo-vest; to investigate the effects of vest loosening, superstructure loosening, and removal of the posterior uprights; and to evaluate the ability of the halo-vest to stabilize the neck within physiological motion limits. Previous clinical and biomechanical studies have investigated neck motion with the halo-vest only in the sagittal plane or only at the injured spinal level. No previous studies have quantified three-dimensional intervertebral motion patterns throughout the injured cervical spine stabilized with the halo-vest or studied the effect of halo-vest components on these motions. The halo-vest was applied to the skull-neck-thorax model. Six osteoligamentous whole cervical spine specimens (occiput through T1 vertebra) were used that had sustained multiplanar ligamentous injuries at C3/4 through C7-T1 during a previous protocol. Flexibility tests were performed with normal halo-vest application, loose vest, loose superstructure, and following removal of the posterior uprights. Average total range of motion for each experimental condition was statistically compared (P < 0.05) with the physiologic rotation limit for each spinal level. Cervical spine snaking was observed in both the sagittal and frontal planes. The halo-vest, applied normally, generally limited average spinal motions to within average physiological limits. No significant increases in average spinal motions above physiologic were observed due to loose vest, loose superstructure, or removal of the posterior uprights. However, a trend toward increased motion at C6/7 in lateral bending was observed due to loose superstructure. The halo-vest, applied normally, effectively immobilized the cervical spine. Sagittal or frontal plane snaking of the cervical spine due to the halo-vest may reduce its immobilization

Triple Halo Coil: Development and Comparison with Other TMS Coils

NASA Astrophysics Data System (ADS)

Rastogi, Priyam; Hadimani, Ravi; Jiles, David

Transcranial Magnetic Stimulation (TMS) is a non-invasive stimulation technique that can be used for the treatment of various neurological disorders such as Parkinson's Disease, PTSD, TBI and anxiety by regulating synaptic activity. TMS is FDA approved for the treatment of major depressive disorder. There is a critical need to develop deep TMS coils that can stimulate deeper regions of the brain without excessively stimulating the cortex in order to provide an alternative to surgical methods. We have developed a novel multi-coil configuration called ``Triple Halo Coil'' (THC) that can stimulate deep brain regions. Investigation of induced electric and magnetic field in these regions have been achieved by computer modelling. Comparison of the results due to THC configuration have been conducted with other TMS coils such as ``Halo Coil'', circular coil and ``Figure of Eight'' coil. There was an improvement of more than 15 times in the strength of magnetic field, induced by THC configuration at 10 cm below the vertex of the head when compared with the ``Figure of Eight'' coil alone. Carver Charitable Trust.

Large-scale assembly bias of dark matter halos

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lazeyras, Titouan; Musso, Marcello; Schmidt, Fabian, E-mail: titouan@mpa-garching.mpg.de, E-mail: mmusso@sas.upenn.edu, E-mail: fabians@mpa-garching.mpg.de

We present precise measurements of the assembly bias of dark matter halos, i.e. the dependence of halo bias on other properties than the mass, using curved 'separate universe' N-body simulations which effectively incorporate an infinite-wavelength matter overdensity into the background density. This method measures the LIMD (local-in-matter-density) bias parameters b {sub n} in the large-scale limit. We focus on the dependence of the first two Eulerian biases b {sup E} {sup {sub 1}} and b {sup E} {sup {sub 2}} on four halo properties: the concentration, spin, mass accretion rate, and ellipticity. We quantitatively compare our results with previous worksmore » in which assembly bias was measured on fairly small scales. Despite this difference, our findings are in good agreement with previous results. We also look at the joint dependence of bias on two halo properties in addition to the mass. Finally, using the excursion set peaks model, we attempt to shed new insights on how assembly bias arises in this analytical model.« less

Simulating halos and coronas in their atmospheric environment.

PubMed

David Gedzelman, Stanley

2008-12-01

Models are developed that simulate the light and color of the sky and of circular halos and coronas as a function of atmospheric pressure, cloud height, width, and optical depth, solar zenith angle, aerosol concentration and size, and ozone content. Halos, coronas, and skylight are treated as singly scattered sunbeams that are depleted in their passage through the atmosphere and cloud. Multiple scattering is included only for background cloud light. Halos produced by hexagonal crystal prisms and coronas produced by monodisperse droplets are visible for cloud optical depths in the range 0.0003 halos and coronas can be bright only at smaller cloud optical depths and tend to be faint at their bottoms when produced in high cloud layers but can be bright at the horizon when produced by narrow cloud cells near ground level.

LAMP detection assays for boxwood blight pathogens: A comparative genomics approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malapi-Wight, Martha; Demers, Jill E.; Veltri, Daniel

Rapid and accurate molecular diagnostic tools are critical to efforts to minimize the impact and spread of emergent pathogens. The identification of diagnostic markers for novel pathogens presents several challenges, especially in the absence of information about population diversity and where genetic resources are limited. The objective of this study was to use comparative genomics datasets to find unique target regions suitable for the diagnosis of two fungal species causing a newly emergent blight disease of boxwood. Candidate marker regions for loop-mediated isothermal amplification (LAMP) assays were identified from draft genomes of Calonectria henricotiae and C. pseudonaviculata, as well asmore » three related species not associated with this disease. To increase the probability of identifying unique targets, we used three approaches to mine genome datasets, based on (i) unique regions, (ii) polymorphisms, and (iii) presence/absence of regions across datasets. From a pool of candidate markers, we demonstrate LAMP assay specificity by testing related fungal species, common boxwood pathogens, and environmental samples containing 445 diverse fungal taxa. In conclusion, this comparative-genomics-based approach to the development of LAMP diagnostic assays is the first of its kind for fungi and could be easily applied to diagnostic marker development for other newly emergent plant pathogens.« less

LAMP detection assays for boxwood blight pathogens: A comparative genomics approach

DOE PAGES

Malapi-Wight, Martha; Demers, Jill E.; Veltri, Daniel; ...

2016-05-20

Rapid and accurate molecular diagnostic tools are critical to efforts to minimize the impact and spread of emergent pathogens. The identification of diagnostic markers for novel pathogens presents several challenges, especially in the absence of information about population diversity and where genetic resources are limited. The objective of this study was to use comparative genomics datasets to find unique target regions suitable for the diagnosis of two fungal species causing a newly emergent blight disease of boxwood. Candidate marker regions for loop-mediated isothermal amplification (LAMP) assays were identified from draft genomes of Calonectria henricotiae and C. pseudonaviculata, as well asmore » three related species not associated with this disease. To increase the probability of identifying unique targets, we used three approaches to mine genome datasets, based on (i) unique regions, (ii) polymorphisms, and (iii) presence/absence of regions across datasets. From a pool of candidate markers, we demonstrate LAMP assay specificity by testing related fungal species, common boxwood pathogens, and environmental samples containing 445 diverse fungal taxa. In conclusion, this comparative-genomics-based approach to the development of LAMP diagnostic assays is the first of its kind for fungi and could be easily applied to diagnostic marker development for other newly emergent plant pathogens.« less

The genome of the Erwinia amylovora phage PhiEaH1 reveals greater diversity and broadens the applicability of phages for the treatment of fire blight.

PubMed

Meczker, Katalin; Dömötör, Dóra; Vass, János; Rákhely, Gábor; Schneider, György; Kovács, Tamás

2014-01-01

The enterobacterium Erwinia amylovora is the causal agent of fire blight. This study presents the analysis of the complete genome of phage PhiEaH1, isolated from the soil surrounding an E. amylovora-infected apple tree in Hungary. Its genome is 218 kb in size, containing 244 ORFs. PhiEaH1 is the second E. amylovora infecting phage from the Siphoviridae family whose complete genome sequence was determined. Beside PhiEaH2, PhiEaH1 is the other active component of Erwiphage, the first bacteriophage-based pesticide on the market against E. amylovora. Comparative genome analysis in this study has revealed that PhiEaH1 not only differs from the 10 formerly sequenced E. amylovora bacteriophages belonging to other phage families, but also from PhiEaH2. Sequencing of more Siphoviridae phage genomes might reveal further diversity, providing opportunities for the development of even more effective biological control agents, phage cocktails against Erwinia fire blight disease of commercial fruit crops.

Strong orientation dependence of surface mass density profiles of dark haloes at large scales

NASA Astrophysics Data System (ADS)

Osato, Ken; Nishimichi, Takahiro; Oguri, Masamune; Takada, Masahiro; Okumura, Teppei

2018-06-01

We study the dependence of surface mass density profiles, which can be directly measured by weak gravitational lensing, on the orientation of haloes with respect to the line-of-sight direction, using a suite of N-body simulations. We find that, when major axes of haloes are aligned with the line-of-sight direction, surface mass density profiles have higher amplitudes than those averaged over all halo orientations, over all scales from 0.1 to 100 Mpc h-1 we studied. While the orientation dependence at small scales is ascribed to the halo triaxiality, our results indicate even stronger orientation dependence in the so-called two-halo regime, up to 100 Mpc h-1. The orientation dependence for the two-halo term is well approximated by a multiplicative shift of the amplitude and therefore a shift in the halo bias parameter value. The halo bias from the two-halo term can be overestimated or underestimated by up to ˜ 30 per cent depending on the viewing angle, which translates into the bias in estimated halo masses by up to a factor of 2 from halo bias measurements. The orientation dependence at large scales originates from the anisotropic halo-matter correlation function, which has an elliptical shape with the axis ratio of ˜0.55 up to 100 Mpc h-1. We discuss potential impacts of halo orientation bias on other observables such as optically selected cluster samples and a clustering analysis of large-scale structure tracers such as quasars.

A GRAVITATIONAL DOUBLE-SCATTERING MECHANISM FOR GENERATING HIGH-VELOCITY OBJECTS DURING HALO MERGERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Samsing, Johan; Department of Astrophysical Sciences, Princeton University, Peyton Hall, Princeton, NJ 08544

2015-02-01

We present a dynamical model that describes how halo particles can receive a significant energy kick from the merger between their own host halo and a target halo. This could provide a possible explanation for some high-velocity objects, including extended systems like globular clusters (GCs). In the model we especially introduce a double-scattering mechanism, where a halo particle receives a significant part of its total energy kick by first undergoing a gravitational deflection by the target halo and subsequently by its original host halo. This generates an energy kick that is due to the relative velocity between the halos duringmore » the deflections. We derive analytically the total kick energy of the particle, which is composed of energy from the double-scattering mechanism and tidal fields, as a function of its position in its original host halo just before merger. In the case of a 1:10 merger, we find that the presented mechanisms can easily generate particles with a velocity approximately two times the virial velocity of the target halo. This motivates us to suggest that the high velocity of the recently discovered GC HVGC-1 can be explained by a head-on halo merger. Finally, we illustrate the orbital evolution of high-velocity particles outside the virial sphere of the target halo by solving the equation of motion in an expanding universe. We find a sweet spot around a scale factor of 0.3-0.5 for ejecting particles into large orbits, which can easily reach beyond approximately five virial radii.« less

Two Stellar Components in the Halo of the Milky Way

DTIC Science & Technology

2007-12-13

that might be considered, multiple lines of evidence derived from these data clearly confirm that the halo can be resolved into (at least) two primary...of the inner-halo population. Evidence for the dichotomy of the halo The spectroscopy, photometry and astrometry for our large sample of stars were...0704-0188 Public reporting burden for the collection of information is estimated to average 1 hour per response, including the time for reviewing

A Speeding Binary in the Galactic Halo

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2016-04-01

The recent discovery of a hyper-velocity binary star system in the halo of the Milky Way poses a mystery: how was this system accelerated to its high speed?Accelerating StarsUnlike the uniform motion in the Galactic disk, stars in the Milky Ways halo exhibit a huge diversity of orbits that are usually tilted relative to the disk and have a variety of speeds. One type of halo star, so-called hyper-velocity stars, travel with speeds that can approach the escape velocity of the Galaxy.How do these hyper-velocity stars come about? Assuming they form in the Galactic disk, there are multiple proposed scenarios through which they could be accelerated and injected into the halo, such as:Ejection after a close encounter with the supermassive black hole at the Galactic centerEjection due to a nearby supernova explosionEjection as the result of a dynamical interaction in a dense stellar population.Further observations of hyper-velocity stars are necessary to identify the mechanism responsible for their acceleration.J1211s SurpriseModels of J1211s orbit show it did not originate from the Galactic center (black dot). The solar symbol shows the position of the Sun and the star shows the current position of J1211. The bottom two panels show two depictions(x-y plane and r-z plane) of estimated orbits of J1211 over the past 10 Gyr. [Nmeth et al. 2016]To this end, a team of scientists led by Pter Nmeth (Friedrich Alexander University, Erlangen-Nrnberg) recently studied the candidate halo hyper-velocity star SDSS J121150.27+143716.2. The scientists obtained spectroscopy of J1211 using spectrographs at the Keck Telescope in Hawaii and ESOs Very Large Telescope in Chile. To their surprise, they discovered the signature of a companion in the spectra: J1211 is actually a binary!Nmeth and collaborators found that J1211, located roughly 18,000 light-years away, is moving at a rapid ~570 km/s relative to the galactic rest frame. The binary system consists of a hot (30,600 K) subdwarf and a

Tests and consequences of disk plus halo models of gamma-ray burst sources

NASA Technical Reports Server (NTRS)