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Sample records for hardwood hybrid poplar

  1. Enzymatic digestion of liquid hot water pretreated hybrid poplar.

    PubMed

    Kim, Youngmi; Mosier, Nathan S; Ladisch, Michael R

    2009-01-01

    Liquid hot (LHW) water pretreatment (LHW) of lignocellulosic material enhances enzymatic conversion of cellulose to glucose by solubilizing hemicellulose fraction of the biomass, while leaving the cellulose more reactive and accessible to cellulase enzymes. Within the range of pretreatment conditions tested in this study, the optimized LHW pretreatment conditions for a 15% (wt/vol) slurry of hybrid poplar were found to be 200(o)C, 10 min, which resulted in the highest fermentable sugar yield with minimal formation of sugar decomposition products during the pretreatment. The LHW pretreatment solubilized 62% of hemicellulose as soluble oligomers. Hot-washing of the pretreated poplar slurry increased the efficiency of hydrolysis by doubling the yield of glucose for a given enzyme dose. The 15% (wt/vol) slurry of hybrid poplar, pretreated at the optimal conditions and hot-washed, resulted in 54% glucose yield by 15 FPU cellulase per gram glucan after 120 h. The hydrolysate contained 56 g/L glucose and 12 g/L xylose. The effect of cellulase loading on the enzymatic digestibility of the pretreated poplar is also reported. Total monomeric sugar yield (glucose and xylose) reached 67% after 72 h of hydrolysis when 40 FPU cellulase per gram glucan were used. An overall mass balance of the poplar-to-ethanol process was established based on the experimentally determined composition and hydrolysis efficiencies of the liquid hot water pretreated poplar.

  2. Fitness dynamics within a poplar hybrid zone: I. Prezygotic and postzygotic barriers impacting a native poplar hybrid stand.

    PubMed

    Roe, Amanda D; MacQuarrie, Chris J K; Gros-Louis, Marie-Claude; Simpson, J Dale; Lamarche, Josyanne; Beardmore, Tannis; Thompson, Stacey L; Tanguay, Philippe; Isabel, Nathalie

    2014-05-01

    Hybridization and introgression are pervasive evolutionary phenomena that provide insight into the selective forces that maintain species boundaries, permit gene flow, and control the direction of evolutionary change. Poplar trees (Populus L.) are well known for their ability to form viable hybrids and maintain their distinct species boundaries despite this interspecific gene flow. We sought to quantify the hybridization dynamics and postzygotic fitness within a hybrid stand of balsam poplar (Populus balsamifera L.), eastern cottonwood (P. deltoides Marsh.), and their natural hybrids to gain insight into the barriers maintaining this stable hybrid zone. We observed asymmetrical hybrid formation with P. deltoides acting as the seed parent, but with subsequent introgression biased toward P. balsamifera. Native hybrids expressed fitness traits intermediate to the parental species and were not universally unfit. That said, native hybrid seedlings were absent from the seedling population, which may indicate additional selective pressures controlling their recruitment. It is imperative that we understand the selective forces maintaining this native hybrid zone in order to quantify the impact of exotic poplar hybrids on this native system.

  3. Fitness dynamics within a poplar hybrid zone: I. Prezygotic and postzygotic barriers impacting a native poplar hybrid stand

    PubMed Central

    Roe, Amanda D; MacQuarrie, Chris J K; Gros-Louis, Marie-Claude; Simpson, J Dale; Lamarche, Josyanne; Beardmore, Tannis; Thompson, Stacey L; Tanguay, Philippe; Isabel, Nathalie

    2014-01-01

    Hybridization and introgression are pervasive evolutionary phenomena that provide insight into the selective forces that maintain species boundaries, permit gene flow, and control the direction of evolutionary change. Poplar trees (Populus L.) are well known for their ability to form viable hybrids and maintain their distinct species boundaries despite this interspecific gene flow. We sought to quantify the hybridization dynamics and postzygotic fitness within a hybrid stand of balsam poplar (Populus balsamifera L.), eastern cottonwood (P. deltoides Marsh.), and their natural hybrids to gain insight into the barriers maintaining this stable hybrid zone. We observed asymmetrical hybrid formation with P. deltoides acting as the seed parent, but with subsequent introgression biased toward P. balsamifera. Native hybrids expressed fitness traits intermediate to the parental species and were not universally unfit. That said, native hybrid seedlings were absent from the seedling population, which may indicate additional selective pressures controlling their recruitment. It is imperative that we understand the selective forces maintaining this native hybrid zone in order to quantify the impact of exotic poplar hybrids on this native system. PMID:24967081

  4. Fitness dynamics within a poplar hybrid zone: II. Impact of exotic sex on native poplars in an urban jungle.

    PubMed

    Roe, Amanda D; MacQuarrie, Chris Jk; Gros-Louis, Marie-Claude; Simpson, J Dale; Lamarche, Josyanne; Beardmore, Tannis; Thompson, Stacey L; Tanguay, Philippe; Isabel, Nathalie

    2014-05-01

    Trees bearing novel or exotic gene components are poised to contribute to the bioeconomy for a variety of purposes such as bioenergy production, phytoremediation, and carbon sequestration within the forestry sector, but sustainable release of trees with novel traits in large-scale plantations requires the quantification of risks posed to native tree populations. Over the last century, exotic hybrid poplars produced through artificial crosses were planted throughout eastern Canada as ornamentals or windbreaks and these exotics provide a proxy by which to examine the fitness of exotic poplar traits within the natural environment to assess risk of exotic gene escape, establishment, and spread into native gene pools. We assessed postzygotic fitness traits of native and exotic poplars within a naturally regenerated stand in eastern Canada (Quebec City, QC). Pure natives (P. balsamifera and P. deltoides spp. deltoides), native hybrids (P. deltoides × P. balsamifera), and exotic hybrids (trees bearing Populus nigra and P. maximowiczii genetic components) were screened for reproductive biomass, yield, seed germination, and fungal disease susceptibility. Exotic hybrids expressed fitness traits intermediate to pure species and were not significantly different from native hybrids. They formed fully viable seed and backcrossed predominantly with P. balsamifera. These data show that exotic hybrids were not unfit and were capable of establishing and competing within the native stand. Future research will seek to examine the impact of exotic gene regions on associated biotic communities to fully quantify the risk exotic poplars pose to native poplar forests.

  5. Fitness dynamics within a poplar hybrid zone: II. Impact of exotic sex on native poplars in an urban jungle

    PubMed Central

    Roe, Amanda D; MacQuarrie, Chris JK; Gros-Louis, Marie-Claude; Simpson, J Dale; Lamarche, Josyanne; Beardmore, Tannis; Thompson, Stacey L; Tanguay, Philippe; Isabel, Nathalie

    2014-01-01

    Trees bearing novel or exotic gene components are poised to contribute to the bioeconomy for a variety of purposes such as bioenergy production, phytoremediation, and carbon sequestration within the forestry sector, but sustainable release of trees with novel traits in large-scale plantations requires the quantification of risks posed to native tree populations. Over the last century, exotic hybrid poplars produced through artificial crosses were planted throughout eastern Canada as ornamentals or windbreaks and these exotics provide a proxy by which to examine the fitness of exotic poplar traits within the natural environment to assess risk of exotic gene escape, establishment, and spread into native gene pools. We assessed postzygotic fitness traits of native and exotic poplars within a naturally regenerated stand in eastern Canada (Quebec City, QC). Pure natives (P. balsamifera and P. deltoides spp. deltoides), native hybrids (P. deltoides × P. balsamifera), and exotic hybrids (trees bearing Populus nigra and P. maximowiczii genetic components) were screened for reproductive biomass, yield, seed germination, and fungal disease susceptibility. Exotic hybrids expressed fitness traits intermediate to pure species and were not significantly different from native hybrids. They formed fully viable seed and backcrossed predominantly with P. balsamifera. These data show that exotic hybrids were not unfit and were capable of establishing and competing within the native stand. Future research will seek to examine the impact of exotic gene regions on associated biotic communities to fully quantify the risk exotic poplars pose to native poplar forests. PMID:24963382

  6. Effective alkaline metal-catalyzed oxidative delignification of hybrid poplar

    DOE PAGESBeta

    Bhalla, Aditya; Bansal, Namita; Stoklosa, Ryan J.; Fountain, Mackenzie; Ralph, John; Hodge, David B.; Hegg, Eric L.

    2016-02-09

    Background: Strategies to improve copper-catalyzed alkaline hydrogen peroxide (Cu-AHP) pretreatment of hybrid poplar were investigated. These improvements included a combination of increasing hydrolysis yields, while simultaneously decreasing process inputs through (i) more efficient utilization of H2O2 and (ii) the addition of an alkaline extraction step prior to the metal-catalyzed AHP pretreatment. We hypothesized that utilizing this improved process could substantially lower the chemical inputs needed during pretreatment. Results: Hybrid poplar was pretreated utilizing a modified process in which an alkaline extraction step was incorporated prior to the Cu-AHP treatment step and H2O2 was added batch-wise over the course of 10more » h. Our results revealed that the alkaline pre-extraction step improved both lignin and xylan solubilization, which ultimately led to improved glucose (86 %) and xylose (95 %) yields following enzymatic hydrolysis. An increase in the lignin solubilization was also observed with fed-batch H2O2 addition relative to batch-only addition, which again resulted in increased glucose and xylose yields (77 and 93 % versus 63 and 74 %, respectively). Importantly, combining these strategies led to significantly improved sugar yields (96 % glucose and 94 % xylose) following enzymatic hydrolysis. In addition, we found that we could substantially lower the chemical inputs (enzyme, H2O2, and catalyst), while still maintaining high product yields utilizing the improved Cu-AHP process. This pretreatment also provided a relatively pure lignin stream consisting of ≥90 % Klason lignin and only 3 % xylan and 2 % ash following precipitation. Two-dimensional heteronuclear single-quantum coherence (2D HSQC) NMR and size-exclusion chromatography demonstrated that the solubilized lignin was high molecular weight (Mw ≈ 22,000 Da) and only slightly oxidized relative to lignin from untreated poplar. In conclusion: This study demonstrated that the fed

  7. CsRAV1 induces sylleptic branching in hybrid poplar.

    PubMed

    Moreno-Cortés, Alicia; Hernández-Verdeja, Tamara; Sánchez-Jiménez, Paloma; González-Melendi, Pablo; Aragoncillo, Cipriano; Allona, Isabel

    2012-04-01

    • Sylleptic branching in trees may increase significantly branch number, leaf area and the general growth of the tree, particularly in its early years. Although this is a very important trait, so far little is known about the genes that control this process. • This article characterizes the Castanea sativa RAV1 gene, homologous to Arabidopsis TEM genes, by analyzing its circadian behavior and examining its winter expression in chestnut stems and buds. Transgenic hybrid poplars over-expressing CsRAV1 or showing RNA interference down-regulated PtaRAV1 and PtaRAV2 expression were produced and analyzed. • Over-expression of the CsRAV1 gene induces the early formation of sylleptic branches in hybrid poplar plantlets during the same growing season in which the lateral buds form. Only minor growth differences and no changes in wood anatomy are produced. • The possibility of generating trees with a greater biomass by manipulating the CsRAV1 gene makes CsRAV1 transgenic plants promising candidates for bioenergy production.

  8. Biomass and nitrogen dynamics in an irrigated hybrid poplar plantation

    SciTech Connect

    McLaughlin, R.A.

    1985-01-01

    A 3-year study measured the effects of ground cover treatments and nitrogen fertilization on biomass and nitrogen dynamics in an irrigated hybrid poplar (Populus deltoides Bartr. x P. trichocarpa Torr. and Gray, clone NC-9922) plantation in northern Wisconsin. Annually fertilized (112 kg N/ha/yr) and unfertilized plots were either maintained weed-free (bare soil), allowed to revegetate with native weeds, or seeded to birdsfoot trefoil (Lotus corniculatus L.). Trees in bare soil plots responded to fertilization primarily in the third growing season, but total biomass of 3-year-old trees was not increased by annual fertilization. High nitrate-nitrogen concentrations in the soil solution suggested significant leaching in both unfertilized and fertilized bare soil plots in the first growing season, and in fertilized plots the second season. Nitrate-nitrogen concentrations declined sharply in fertilized bare soil plots during the third growing season. Cover crop biomass was greatest in the second year and declined thereafter due to declines in below-ground components. Fertilization increased tree growth in these plots, but cover crop treatments had no effect. Results of this study suggest that, under irrigated conditions, a cover crop can substantially reduce leaching losses of nutrients and serve as a slow-release pool of nitrogen after the trees achieve crown closure. Fertilization is not recommended in these plantations until the second growing season if a cover crop is present and the third growing season if complete weed control is practiced.

  9. Genetic variation of hydraulic and wood anatomical traits in hybrid poplar and trembling aspen.

    PubMed

    Schreiber, Stefan G; Hacke, Uwe G; Hamann, Andreas; Thomas, Barb R

    2011-04-01

    Intensive forestry systems and breeding programs often include either native aspen or hybrid poplar clones, and performance and trait evaluations are mostly made within these two groups. Here, we assessed how traits with potential adaptive value varied within and across these two plant groups. Variation in nine hydraulic and wood anatomical traits as well as growth were measured in selected aspen and hybrid poplar genotypes grown at a boreal planting site in Alberta, Canada. Variability in these traits was statistically evaluated based on a blocked experimental design. We found that genotypes of trembling aspen were more resistant to cavitation, exhibited more negative water potentials, and were more water-use-efficient than hybrid poplars. Under the boreal field test conditions, which included major regional droughts, height growth was negatively correlated with branch vessel diameter (Dv ) in both aspen and hybrid poplars and differences in Dv were highly conserved in aspen trees from different provenances. Differences between the hybrid poplars and aspen provenances suggest that these two groups employ different water-use strategies. The data also suggest that vessel diameter may be a key trait in evaluating growth performance in a boreal environment.

  10. Nitrogen fertilizer and sewage sludge effects on hybrid poplars. Final report

    SciTech Connect

    Riha, S.R.; Senesac, G.P.; Naylor, L.

    1985-01-01

    Experiments conducted in the greenhouse compared the growth and nutrient and heavy metal uptake in two clones of hybrid poplar grown in soil amended with nitrogen fertilizer or sewage sludge. In addition, poplar responses to weed competition and to rooting prior to planting were investigated. Both fertilizer and sludge application increased poplar stem biomass. Weeds reduced poplar biomass. The large difference in root biomass of the two poplar clones may account for different effects weed and sludge application had on nutrient and heavy metal uptake in each clone. The relatively small root biomass of I-45/51 increased with increasing sludge application, as did the uptake of nutrients and heavy metals. The relatively large root biomass of clone NE-510 was reduced when weeds were present, as was nutrient and heavy metal uptake. Other results suggest that poplars with low root-to-stem ratios may be most affected by weed competition, especially after their first year, and that nitrogen fertilization may alleviate effects of weeds on their growth. Poplars grown in sludge-amended soil did not accumulate more of any nutrient or heavy metal studied compared to those grown in nitrogen-fertilized soil. 17 refs., 5 figs., 57 tabs.

  11. Polyphenol Oxidase from Hybrid Poplar. Cloning and Expression in Response to Wounding and Herbivory1

    PubMed Central

    Constabel, C. Peter; Yip, Lynn; Patton, Joseph J.; Christopher, Mary E.

    2000-01-01

    The inducible expression of polyphenol oxidase (PPO), a presumed antiherbivore enzyme, was examined in hybrid poplar (Populus trichocarpa × Populus deltoides). Following mechanical wounding simulating insect damage, PPO activity increased dramatically in wounded and unwounded leaves on wounded plants beginning at 24 and 48 h, respectively. A hybrid poplar PPO cDNA was isolated and its nucleotide sequence determined. On northern blots, PPO transcripts were detected within 8 h of wounding, and reached peak levels at 16 and 24 h in wounded and unwounded leaves, respectively. Methyl jasmonate spray and feeding by forest tent caterpillar also induced PPO expression. The induction of PPO was strongest in the youngest four leaves, which were generally avoided by caterpillars in free feeding experiments. This wound- and herbivore-induced expression of PPO in hybrid poplar supports the defensive role of this protein against insect pests. PMID:10982443

  12. Transgenic Hybrid Poplar for Sustainable and Scalable Production of the Commodity/Specialty Chemical, 2-Phenylethanol

    PubMed Central

    Costa, Michael A.; Marques, Joaquim V.; Dalisay, Doralyn S.; Herman, Barrington; Bedgar, Diana L.; Davin, Laurence B.; Lewis, Norman G.

    2013-01-01

    Fast growing hybrid poplar offers the means for sustainable production of specialty and commodity chemicals, in addition to rapid biomass production for lignocellulosic deconstruction. Herein we describe transformation of fast-growing transgenic hybrid poplar lines to produce 2-phenylethanol, this being an important fragrance, flavor, aroma, and commodity chemical. It is also readily converted into styrene or ethyl benzene, the latter being an important commodity aviation fuel component. Introducing this biochemical pathway into hybrid poplars marks the beginnings of developing a platform for a sustainable chemical delivery system to afford this and other valuable specialty/commodity chemicals at the scale and cost needed. These modified plant lines mainly sequester 2-phenylethanol via carbohydrate and other covalently linked derivatives, thereby providing an additional advantage of effective storage until needed. The future potential of this technology is discussed. MALDI metabolite tissue imaging also established localization of these metabolites in the leaf vasculature. PMID:24386157

  13. Transgenic hybrid poplar for sustainable and scalable production of the commodity/specialty chemical, 2-phenylethanol.

    PubMed

    Costa, Michael A; Marques, Joaquim V; Dalisay, Doralyn S; Herman, Barrington; Bedgar, Diana L; Davin, Laurence B; Lewis, Norman G

    2013-01-01

    Fast growing hybrid poplar offers the means for sustainable production of specialty and commodity chemicals, in addition to rapid biomass production for lignocellulosic deconstruction. Herein we describe transformation of fast-growing transgenic hybrid poplar lines to produce 2-phenylethanol, this being an important fragrance, flavor, aroma, and commodity chemical. It is also readily converted into styrene or ethyl benzene, the latter being an important commodity aviation fuel component. Introducing this biochemical pathway into hybrid poplars marks the beginnings of developing a platform for a sustainable chemical delivery system to afford this and other valuable specialty/commodity chemicals at the scale and cost needed. These modified plant lines mainly sequester 2-phenylethanol via carbohydrate and other covalently linked derivatives, thereby providing an additional advantage of effective storage until needed. The future potential of this technology is discussed. MALDI metabolite tissue imaging also established localization of these metabolites in the leaf vasculature. PMID:24386157

  14. Polyphenol oxidase from hybrid poplar. Cloning and expression in response to wounding and herbivory.

    PubMed

    Constabel, C P; Yip, L; Patton, J J; Christopher, M E

    2000-09-01

    The inducible expression of polyphenol oxidase (PPO), a presumed antiherbivore enzyme, was examined in hybrid poplar (Populus trichocarpa x Populus deltoides). Following mechanical wounding simulating insect damage, PPO activity increased dramatically in wounded and unwounded leaves on wounded plants beginning at 24 and 48 h, respectively. A hybrid poplar PPO cDNA was isolated and its nucleotide sequence determined. On northern blots, PPO transcripts were detected within 8 h of wounding, and reached peak levels at 16 and 24 h in wounded and unwounded leaves, respectively. Methyl jasmonate spray and feeding by forest tent caterpillar also induced PPO expression. The induction of PPO was strongest in the youngest four leaves, which were generally avoided by caterpillars in free feeding experiments. This wound- and herbivore-induced expression of PPO in hybrid poplar supports the defensive role of this protein against insect pests.

  15. Post-establishment fertilization of Minnesota hybrid poplar plantations.

    SciTech Connect

    Coleman, M., D.; Tolsted, D.; Nichols, T.; Johnson, W., D.; Ween, E.G.; Houghtaling, T.

    2006-01-01

    Experimental plantings were installed at five sites in three locations in western Minnesota. Aboveground biomass production increased 43-82% as a result of three annual applications of urea or balanced nutrient blend fertilizer beginning near canopy closure. There were no production differences between the type of fertilizer used, indicating that N was the major limiting nutrient. Responses were consistent from site to site, indicating that hybrid poplar stands in this region at this stage of development would be very responsive to fertilization. Leaf tissue N, P, and K concentrations increased in response to both fertilizer treatments; P and K increased more frequently in response to the blend treatment compared to the N-only urea treatment. The diagnosis and recommendation integrated system (DRIS) indices indicated that the stands were near optimal nutritional balance prior to fertilization. Treatments increased individual leaf area and leaf litter production up to 33% and 37%, respectively. Canopy leaf area, leaf N concentration and the sum of DRIS indices were correlated with aboveground production. Growth efficiency, the ratio of production to canopy leaf area, increased with both fertilizer treatment and successive years of treatment, indicating improved stand vigor due to nutrient amendments. Stand production increased more in response to changes in leaf N concentration as stands aged. Plantation production continued to increase with increased internal N concentration even when deficiency levels or levels defined as sufficient for fast growth were exceeded. The correlation between aboveground production and the sum of DRIS indices shows that optimal nutrition at canopy closure may result in current aboveground dry matter production exceeding 13Mgha-1 yr-1. Multiple small-dose amendments appear to be effective in increasing production by maintaining high internal N concentrations.

  16. Thaumatin-like proteins are differentially expressed and localized in phloem tissue of hybrid poplar

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Two thaumatin-like proteins (TLPs) were previously identified in phloem exudate of hybrid poplar (Populus trichocarpa x P. deltoides) using proteomics methods, and their sieve element localization confirmed by immunofluorescence. In the current study, we analyzed different tissues to further underst...

  17. Large-scale hybrid poplar production economics: 1995 Alexandria, Minnesota establishment cost and management

    SciTech Connect

    Downing, M.; Langseth, D.; Stoffel, R.; Kroll, T.

    1996-12-31

    The purpose of this project was to track and monitor costs of planting, maintaining, and monitoring large scale commercial plantings of hybrid poplar in Minnesota. These costs assists potential growers and purchasers of this resource to determine the ways in which supply and demand may be secured through developing markets.

  18. Gaseous NO2 effects on stomatal behavior, photosynthesis and respiration of hybrid poplar leaves

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In this study, we used poplar as a model plant and investigated the effects of gaseous nitrogen dioxide (NO2, 4 microliter per liter) on stomatal conductance, photosynthesis, dark- and photorespiration of Populus alba x Populus berolinensis hybrid leaves using the photosynthesis system and scanning...

  19. Isoprene biosynthesis in hybrid poplar impacts ozone tolerance

    NASA Astrophysics Data System (ADS)

    Behnke, K.; Kleist, E.; Uerlings, R.; Wildt, J.; Rennenberg, H.; Schnitzler, J. P.

    2009-04-01

    Isoprene is the most abundant volatile compound emitted by vegetation. It influences air chemistry and is thought to take part in plant defense reactions against abiotic stress such as high temperature or ozone. However, whether or not isoprene emission interacts with ozone tolerance of plants is still in discussion. We exploited transgenic non-isoprene emitting Grey poplar (Populus x canescens) in a biochemical and physiological model study to investigate the effect of acute ozone stress on the elicitation of defense-related emissions of plant volatiles, photosynthesis and the antioxidative system. We recorded that non-isoprene emitting poplars are more resistant to ozone as indicated by less damaged leaf area and higher assimilation rates compared to ozone-exposed wild type plants. The integral of green leaf volatile (GLV) emissions was different between the two poplar phenotypes and a reliable early marker for subsequent leaf damage. For other stress-induced volatiles like mono-, homo-, and sesquiterpenes, and methyl salicylate similar time profiles, pattern and emission intensities were observed in both transgenic and wild type plants. However, un-stressed non-isoprene emitting poplars are characterized by elevated levels of ascorbate and α-tocopherol as well as a more effective de-epoxidation ratio of xanthophylls than in wild type plants. Since ozone quenching properties of ascorbate are much higher than those of isoprene and furthermore α-tocopherol also is an essential antioxidant, non-isoprene emitting poplars might benefit from changes within the antioxidative system by providing them with enhanced ozone tolerance.

  20. Predictive relationships for uptake of organic contaminants by hybrid poplar trees

    SciTech Connect

    Burken, J.G.; Schnoor, J.L.

    1998-11-01

    Twelve organic compounds commonly found at hazardous waste sites were studied for uptake by hybrid poplar trees. The vegetative uptake of many of these compounds has not previously been demonstrated for plant species being utilized for phytoremediation, such as hybrid poplar trees. Experiments were conducted hydroponically utilizing {sup 14}C-labeled compounds to ascertain translocation and fate. Predictive relationships for the translocation and partitioning to plant tissues were developed from the experimental data. Translocation and partitioning relationships based on compounds` octanol-water partitioning coefficients produced the best results, but the relationships did not allow for fully accurate prediction of each contaminant`s fate. Translocation and subsequent transpiration of volatile organic compounds (VOCs) from the leaves to the atmosphere was shown to be a significant pathway. As full-scale phytoremediation systems are deliberated, the pathways investigated here should be considered in terms of a contaminant removal mechanism and potential contamination of the vegetation.

  1. Exploring the Role of Plant Genetics to Enhance Soil Carbon Sequestration in Hybrid Poplar Plantations

    NASA Astrophysics Data System (ADS)

    Wullschleger, S. D.; Garten, C. T.; Classen, A. T.

    2008-12-01

    Atmospheric CO2 concentrations have increased in recent decades and are projected to increase even further during the coming century. These projections have prompted scientists and policy-makers to consider how plants and soils can be used to stabilize CO2 concentrations. Although storing carbon in terrestrial ecosystems represents an attractive near-term option for mitigating rising atmospheric CO2 concentrations, enhancing the sequestration potential of managed systems will require advancements in understanding the fundamental mechanisms that control rates of carbon transfer and turnover in plants and soils. To address this challenge, a mathematical model was constructed to evaluate how changes in particular plant traits and management practices could affect soil carbon storage beneath hybrid poplar (Populus) plantations. The model was built from four sub-models that describe aboveground biomass, root biomass, soil carbon dynamics, and soil nitrogen transformations for trees growing throughout a user-defined rotation. Simulations could be run over one or multiple rotations. A sensitivity analysis of the model indicated changes in soil carbon storage were affected by variables that could be linked to hybrid poplar traits like rates of aboveground production, partitioning of carbon to coarse and fine roots, and rates of root decomposition. A higher ratio of belowground to aboveground production was especially important and correlated directly with increased soil carbon storage. Faster decomposition rates for coarse and fine dead roots resulted in a greater loss of carbon to the atmosphere as CO2 and less residual organic carbon for transfer to the fast soil carbon pool. Hence, changes in root chemistry that prolonged dead root decomposition rates, a trait that is under potential genetic control, were predicted to increase soil carbon storage via higher soil carbon inputs. Nitrogen limitation of both aboveground biomass production and soil carbon sequestration was

  2. Cultivation of fast-growing hardwoods

    SciTech Connect

    White, E.H.; Abrahamson, L.P. . Coll. of Environmental Science and Forestry)

    1991-10-01

    The intensive culture of hybrid poplar has received in-depth study as part of the Fast-Growing Hardwood Program. Research has concentrated on short-rotation intensive culture systems. Specific studies and operations included establishing and maintaining a nursery/cutting orchard, installing clone-site trials in central and southern New York State and initiating studies of no-till site preparation, nutrient utilization efficiency, wood quality and soil solution chemistry. The nursery/cutting orchard was used to provide material for various research plantings and as a genotype repository. Clone- site trials results showed that hybrid poplar growth potential was affected by clone type and was related to inherent soil-site conditions. No-till techniques were shown to be successful in establishing hybrid poplar in terms of survival and growth when compared to conventional clean tillage and/or no competition control, and can be considered for use on sites that are particularly prone to erosion. Nutrient use efficiency was significantly affected by clone type, and should be a consideration when selecting clones for operational planting if fertilization is to be effectively and efficiently used. Wood quality differed among clones with site condition and tree age inferred as important factors. Soil solution chemistry was minimally affected by intensive cultural practices with no measured adverse effect on soil water quality. Generally, results of these studies showed that appropriate hybrid poplar clones grown in short-rotation intensively cultured systems can be used successfully in New York State if proper site conditions exist and appropriate establishment and maintenance techniques are used. 37 refs., 4 figs., 22 tabs.

  3. Sorption, uptake, and biotransformation of 17β-estradiol, 17α-ethinylestradiol, zeranol, and trenbolone acetate by hybrid poplar.

    PubMed

    Bircher, Sam; Card, Marcella L; Zhai, Guangshu; Chin, Yu-Ping; Schnoor, Jerald L

    2015-12-01

    Hormonally active compounds may move with agricultural runoff from fields with applied manure and biosolids into surface waters where they pose a threat to human and environmental health. Riparian zone plants could remove hormonally active compounds from agricultural runoff. Therefore, sorption to roots, uptake, translocation, and transformation of 3 estrogens (17β-estradiol, 17α-ethinylestradiol, and zeranol) and 1 androgen (trenbolone acetate) commonly found in animal manure or biosolids were assessed by hydroponically grown hybrid poplar, Populus deltoides x nigra, DN-34, widely used in riparian buffer strips. Results clearly showed that these hormones were rapidly removed from 2 mg L(-1) hydroponic solutions by more than 97% after 10 d of exposure to full poplar plants or live excised poplars (cut-stem, no leaves). Removals by sorption to dead poplar roots that had been autoclaved were significantly less, 71% to 84%. Major transformation products (estrone and estriol for estradiol; zearalanone for zeranol; and 17β-trenbolone from trenbolone acetate) were detected in the root tissues of all 3 poplar treatments. Root concentrations of metabolites peaked after 1 d to 5 d and then decreased in full and live excised poplars by further transformation. Metabolite concentrations were less in dead poplar treatments and only slowly increased without further transformation. Taken together, these findings show that poplars may be effective in controlling the movement of hormonally active compounds from agricultural fields and avoiding runoff to streams.

  4. Sorption, uptake, and biotransformation of 17β-estradiol, 17α-ethinylestradiol, zeranol, and trenbolone acetate by hybrid poplar.

    PubMed

    Bircher, Sam; Card, Marcella L; Zhai, Guangshu; Chin, Yu-Ping; Schnoor, Jerald L

    2015-12-01

    Hormonally active compounds may move with agricultural runoff from fields with applied manure and biosolids into surface waters where they pose a threat to human and environmental health. Riparian zone plants could remove hormonally active compounds from agricultural runoff. Therefore, sorption to roots, uptake, translocation, and transformation of 3 estrogens (17β-estradiol, 17α-ethinylestradiol, and zeranol) and 1 androgen (trenbolone acetate) commonly found in animal manure or biosolids were assessed by hydroponically grown hybrid poplar, Populus deltoides x nigra, DN-34, widely used in riparian buffer strips. Results clearly showed that these hormones were rapidly removed from 2 mg L(-1) hydroponic solutions by more than 97% after 10 d of exposure to full poplar plants or live excised poplars (cut-stem, no leaves). Removals by sorption to dead poplar roots that had been autoclaved were significantly less, 71% to 84%. Major transformation products (estrone and estriol for estradiol; zearalanone for zeranol; and 17β-trenbolone from trenbolone acetate) were detected in the root tissues of all 3 poplar treatments. Root concentrations of metabolites peaked after 1 d to 5 d and then decreased in full and live excised poplars by further transformation. Metabolite concentrations were less in dead poplar treatments and only slowly increased without further transformation. Taken together, these findings show that poplars may be effective in controlling the movement of hormonally active compounds from agricultural fields and avoiding runoff to streams. PMID:26184466

  5. Engineering functional artificial hybrid proteins between poplar peroxiredoxin II and glutaredoxin or thioredoxin

    SciTech Connect

    Rouhier, Nicolas . E-mail: nrouhier@scbiol.uhp-nancy.fr; Gama, Filipe; Wingsle, Gunnar; Gelhaye, Eric; Gans, Pierre; Jacquot, Jean-Pierre

    2006-03-24

    The existence of natural peroxiredoxin-glutaredoxin hybrid enzymes in several bacteria is in line with previous findings indicating that poplar peroxiredoxin II can use glutaredoxin as an electron donor. This peroxiredoxin remains however unique since it also uses thioredoxin with a quite good efficiency. Based on the existing fusions, we have created artificial enzymes containing a poplar peroxiredoxin module linked to glutaredoxin or thioredoxin modules. The recombinant fusion enzymes folded properly into non-covalently bound homodimers or homotetramers. Two of the three protein constructs exhibit peroxidase activity, a reaction where the two modules need to function together, but they also display enzymatic activities specific of each module. In addition, mass spectrometry analyses indicate that the Prx module can be both glutathiolated or overoxidized in vitro. This is discussed in the light of the Prx reactivity.

  6. Stimulation of hybrid poplar growth in petroleum-contaminated soils through oxygen addition and soil nutrient amendments.

    PubMed

    Rentz, Jeremy A; Chapman, Brad; Alvarez, Pedro J J; Schnoor, Jerald L

    2003-01-01

    Hybrid poplar trees (Populus deltoides x nigra DN34) were grown in a green-house using hydrocarbon-contaminated soil from a phytoremediation demonstration site in Health, Ohio. Two independent experiments investigated the effect of nutrient addition on poplar growth and the importance of oxygen addition to root development and plant growth. Biomass measurements, poplar height, and leaf color were used as indicators of plant health in the selection of a 10/5/5 NPK fertilizer applied at 1121 kg/ha (112 kg-N, 24.4 kg-P, 46.5 kg-K per ha) to enhance hybrid poplar growth at the Health site. Five passive methods of oxygen delivery were examined, including aeration tubes, gravel addition, and an Oxygen Release Compound (ORC). When ORC was placed in coffee filters above hydrocarbon-contaminated soil, a statistically significant increase of 145% was observed in poplar biomass growth, relative to unamended controls. The ORC in filters also stimulated significant increases in root density. A 15.2-cm interval of soil directly below ORC addition exhibited an increase from 2.6 +/- 1.0 mg/cm3 to 4.8 +/- 1.0 mg/cm3, showing stimulation of root growth in hydrocarbon-stained soil. The positive response of hybrid poplars to oxygen amendments suggests that overcoming oxygen limitation to plants should be considered in phytoremediation projects when soil contamination exerts a high biochemical oxygen demand, such as in former refinery sites.

  7. Stimulation of hybrid poplar growth in petroleum-contaminated soils through oxygen addition and soil nutrient amendments.

    PubMed

    Rentz, Jeremy A; Chapman, Brad; Alvarez, Pedro J J; Schnoor, Jerald L

    2003-01-01

    Hybrid poplar trees (Populus deltoides x nigra DN34) were grown in a green-house using hydrocarbon-contaminated soil from a phytoremediation demonstration site in Health, Ohio. Two independent experiments investigated the effect of nutrient addition on poplar growth and the importance of oxygen addition to root development and plant growth. Biomass measurements, poplar height, and leaf color were used as indicators of plant health in the selection of a 10/5/5 NPK fertilizer applied at 1121 kg/ha (112 kg-N, 24.4 kg-P, 46.5 kg-K per ha) to enhance hybrid poplar growth at the Health site. Five passive methods of oxygen delivery were examined, including aeration tubes, gravel addition, and an Oxygen Release Compound (ORC). When ORC was placed in coffee filters above hydrocarbon-contaminated soil, a statistically significant increase of 145% was observed in poplar biomass growth, relative to unamended controls. The ORC in filters also stimulated significant increases in root density. A 15.2-cm interval of soil directly below ORC addition exhibited an increase from 2.6 +/- 1.0 mg/cm3 to 4.8 +/- 1.0 mg/cm3, showing stimulation of root growth in hydrocarbon-stained soil. The positive response of hybrid poplars to oxygen amendments suggests that overcoming oxygen limitation to plants should be considered in phytoremediation projects when soil contamination exerts a high biochemical oxygen demand, such as in former refinery sites. PMID:12710235

  8. Effect of clonal variation among hybrid poplars on susceptibility of gypsy moth (Lepidoptera: Lymantriidae) to Bacillus thuringiensis subsp. kurstaki.

    PubMed

    Broderick, Nichole A; Vasquez, Eric; Handelsman, Jo; Raffa, Kenneth F

    2010-06-01

    Trees in the genus Populus can provide substantial commercial and ecological benefits, including sustainable alternatives to traditional forestry. Realization of this potential requires intensive management, but damage by defoliating insects can severely limit productivity in such systems. Two approaches to limiting these losses include cultivation of poplar varieties with inherent resistance to pests and application of microbial pesticides. Little is known about the interaction between host resistance and the ability of poplars to support the efficacy of biocontrol agents. The research described here was conducted to survey the effect of hybrid poplar clones on gypsy moth, Lymantria dispar (L.) (Lepidoptera: Lymantriidae), a pest on these trees. We assessed the effect of various poplar clones on larval performance and susceptibility to Bacillus thuringiensis subsp. kurstaki. Larvae were reared from hatching on the foliage of 25 hybrid poplar clones and we monitored larval survival, development time, and weight at fourth instar. Eight of these clones showed high resistance against gypsy moth. The remaining clones showed high variation in their effect on larval performance. We evaluated the susceptibility of third-instar larvae to B. thuringiensis subsp. kurstaki when reared on the 17 remaining clones. There was a significant effect of poplar clone on time to death after ingestion of B. thuringiensis subsp. kurstaki. The susceptibility of gypsy moth larvae to B. thuringiensis on various clones was not correlated with the effects of these clones on larval performance in the absence of B. thuringiensis, suggesting this interaction is more complex than merely reflecting higher mortality to previously stressed larvae.

  9. Hybrid poplar plantations are suitable habitat for reintroduced forest herbs with conservation status.

    PubMed

    Boothroyd-Roberts, Kathleen; Gagnon, Daniel; Truax, Benoit

    2013-01-01

    Plantations of fast-growing tree species may be of use in conservation by accelerating the restoration of forest habitat on abandoned farmland and increasing connectivity in fragmented landscapes. The objective of this study was to determine if hybrid poplar plantations can be suitable habitats for the reintroduction of native forest plant species and, if so, which abiotic factors predict successful reintroduction. Four species of forest herb species (Trillium grandiflorum, Sanguinaria canadensis, Maianthemum racemosum, Asarum canadense), of which three have legal conservation status, were transplanted into experimental plantations of two hybrid poplar clones and nearby second-growth woodlots at six sites in southern Quebec, Canada. The transplanted individuals were protected from deer browsing with exclusion cages. After two years, the plant responses of all four species were stable or increased over two years in both types of hybrid poplar plantations. Sanguinaria showed a better response in the plantations than in the woodlots, preferring the rich post-agricultural soils of the plantations with low C:N ratios. Asarum and Maianthemum showed no significant difference between stand types, while Trillium grew better in the woodlots than in the plantations. Much of the variability in the response of the latter three species was unexplained by the measured environmental variables. These results suggest that certain forest herb species can be reintroduced as juvenile plants into plantations, knowing that their spontaneous recolonization is often limited by dispersal and/or seedling establishment. Plantations could also contribute to the conservation of biodiversity by providing an environment for the cultivation of forest herb species as an alternative to their destructive harvest from natural populations.

  10. Influence of soil fertility and water stress on the ozone response of hybrid poplar trees

    SciTech Connect

    Harkov, R.; Brennan, E.

    1980-01-01

    Experiments were conducted to determine the role of soil fertility and water stress on the ozone response of hybrid poplar trees. Rooted cuttings of hybrid poplar clone number388 (Populus maximowiczii X P. trichocarpa) were grown in a filtered-air greenhouse in 4.73-L plastic pots containing a greenhouse potting mix. A slow release 18-6-12 NPK fertilizer was added to obtain four soil fertility levels. Although the nitrogen content of the foliage increased significantly, after 2 months of growth, neither linear growth nor percent dry weight was affected by these amendments. Trees with a foliar content of approximately 2.69% N were found to be more susceptible to ozone fumigation of 196 ..mu..g/m/sup 3/ for 6 hr than were trees with 1.53, 3.12, or 3.47% N. In the water stress experiment, withholding water from the test plants for 6-9 days reduced the relative water content in the foliage to 7-21%, respectively, below that of control plants, and protected the trees from a 6-hr fumigation at 196 ..mu..g/m/sup 3/. Visible water stress symptoms were not evident in plants from which water had been withheld for 6 days. These results are discussed as they pertain to susceptibility of urban trees to ozone damage.

  11. Predicting yields of short-rotation hybrid poplar (Populus spp.) for the United States through model-data synthesis.

    PubMed

    Wang, Dan; LeBauer, David; Dietze, Michael

    2013-06-01

    Hybrid poplar (Populus spp.) is an important biomass crop being evaluated for cellulosic ethanol production. Predictions of poplar growth, rotation period, and soil carbon sequestration under various growing conditions, soils, and climates are critical for farmers and managers planning to establish short-rotation forestry (SRF) plantations. In this study, we used an ecoinformatics workflow, the Predictive Ecosystem Analyzer (PEcAn), to integrate literature data and field measurements into the Ecosystem Demography 2 (ED2) model to estimate yield potential of poplar plantations. Within PEcAn 164 records of seven different traits from the literature were assimilated using a Bayesian meta-analysis. Next, variance decomposition identified seven variables for further constraint that contributed > 80% to the uncertainty in modeled yields: growth respiration, dark respiration, quantum efficiency, mortality coefficient, water conductance, fine-root allocation, and root turnover rate. Assimilation of observed yields further constrained uncertainty in model parameters (especially dark respiration and root turnover rate) and biomass estimates. Additional measurements of growth respiration, mortality, water conductance, and quantum efficiency would provide the most efficient path toward further constraint of modeled yields. Modeled validation demonstrated that ED2 successfully captured the interannual and spatial variability of poplar yield observed at nine independent sites. Site-level analyses were conducted to estimate the effect of land use change to SRF poplar on soil C sequestration compared to alternate land uses. These suggest that poplar plantations became a C sink within 18 years of conversion from corn production or existing forest. Finally, poplar yields were estimated for the contiguous United States at a half degree resolution in order to determine potential productivity, estimate the optimal rotation period, and compare poplar to perennial grass yields. This

  12. Predicting yields of short-rotation hybrid poplar (Populus spp.) for the United States through model-data synthesis.

    PubMed

    Wang, Dan; LeBauer, David; Dietze, Michael

    2013-06-01

    Hybrid poplar (Populus spp.) is an important biomass crop being evaluated for cellulosic ethanol production. Predictions of poplar growth, rotation period, and soil carbon sequestration under various growing conditions, soils, and climates are critical for farmers and managers planning to establish short-rotation forestry (SRF) plantations. In this study, we used an ecoinformatics workflow, the Predictive Ecosystem Analyzer (PEcAn), to integrate literature data and field measurements into the Ecosystem Demography 2 (ED2) model to estimate yield potential of poplar plantations. Within PEcAn 164 records of seven different traits from the literature were assimilated using a Bayesian meta-analysis. Next, variance decomposition identified seven variables for further constraint that contributed > 80% to the uncertainty in modeled yields: growth respiration, dark respiration, quantum efficiency, mortality coefficient, water conductance, fine-root allocation, and root turnover rate. Assimilation of observed yields further constrained uncertainty in model parameters (especially dark respiration and root turnover rate) and biomass estimates. Additional measurements of growth respiration, mortality, water conductance, and quantum efficiency would provide the most efficient path toward further constraint of modeled yields. Modeled validation demonstrated that ED2 successfully captured the interannual and spatial variability of poplar yield observed at nine independent sites. Site-level analyses were conducted to estimate the effect of land use change to SRF poplar on soil C sequestration compared to alternate land uses. These suggest that poplar plantations became a C sink within 18 years of conversion from corn production or existing forest. Finally, poplar yields were estimated for the contiguous United States at a half degree resolution in order to determine potential productivity, estimate the optimal rotation period, and compare poplar to perennial grass yields. This

  13. Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.

    PubMed

    Rohde, Antje; Storme, Véronique; Jorge, Véronique; Gaudet, Muriel; Vitacolonna, Nicola; Fabbrini, Francesco; Ruttink, Tom; Zaina, Giusi; Marron, Nicolas; Dillen, Sophie; Steenackers, Marijke; Sabatti, Maurizio; Morgante, Michele; Boerjan, Wout; Bastien, Catherine

    2011-01-01

    • The seasonal timing of growth events is crucial to tree distribution and conservation. The seasonal growth cycle is strongly adapted to the local climate that is changing because of global warming. We studied bud set as one cornerstone of the seasonal growth cycle in an integrative approach. • Bud set was dissected at the phenotypic level into several components, and phenotypic components with most genetic variation were identified. While phenotypic variation resided in the timing of growth cessation, and even so more in the duration from growth cessation to bud set, the timing of growth cessation had a stronger genetic component in both natural and hybrid populations. • Quantitative trait loci (QTL) were identified for the most discriminative phenotypic bud-set components across four poplar pedigrees. The QTL from different pedigrees were recurrently detected in six regions of the poplar genome. • These regions of 1.83-4.25 Mbp in size, containing between 202 and 394 genes, form the basis for further molecular-genetic dissection of bud set.

  14. Prioritization of copper for the use in photosynthetic electron transport in developing leaves of hybrid poplar

    PubMed Central

    Shahbaz, Muhammad; Ravet, Karl; Peers, Graham; Pilon, Marinus

    2015-01-01

    Plastocyanin (PC) is an essential and abundant copper (Cu) protein required for photosynthesis in higher plants. Severe copper deprivation has the potential to cause a defect in photosynthetic electron transport due to a lack in PC. The Cu-microRNAs, which are up-regulated under Cu deficiency, down-regulate the expression of target Cu proteins other than PC, cytochrome-c oxidase and the ethylene receptors. It has been proposed that this mechanism saves Cu for PC maturation. We aimed to test how hybrid poplar, a species that has capacity to rapidly expand its photosynthetically active tissue, responds to variations in Cu availability over time. Measurement of chlorophyll fluorescence after Cu depletion revealed a drastic effect on photosynthesis in hybrid poplar. The decrease in photosynthetic capacity was correlated with a reduction in PC protein levels. Compared to older leaves, PC decreased more strongly in developing leaves, which also lost more photosynthetic electron transport capacity. The effect of Cu depletion on older and more developed leaves was minor and these leaves maintained much of their photosynthetic capacity. Interestingly, upon resupply of Cu to the medium a very rapid recovery of Cu levels was seen in the younger leaves with a concomitant rise in the expression and activity of PC. In contrast, the expression of those Cu proteins, which are targets of microRNAs was under the same circumstances delayed. At the same time, Cu resupply had only minor effects on the older leaves. The data suggest a model where rapid recovery of photosynthetic capacity in younger leaves is made possible by a preferred allocation of Cu to PC in younger leaves, which is supported by Cu-microRNA expression. PMID:26089828

  15. Hybrid poplar and forest soil response to municipal and industrial by-products: a greenhouse study.

    PubMed

    Cavaleri, Molly A; Gilmore, Daniel W; Mozaffari, Morteza; Rosen, Carl J; Halbach, Thomas R

    2004-01-01

    Little research has been conducted in the Lake States (Minnesota, Wisconsin, and Michigan) to evaluate the effects of municipal and industrial by-product applications on the early growth of short rotation woody crops such as hybrid poplar. Anticipated shortages of harvestable-age aspen in the next decade can be alleviated and rural development can be enhanced through the application of by-products to forest soils. This study was conducted to evaluate the effects of inorganic fertilizer, boiler ash, biosolids, and the co-application of ash and biosolids application on tree growth and soil properties by measuring hybrid poplar clone NM-6 (Populus nigra L. x P. maximowiczii A. Henry) yield, nutrient uptake, and select post-harvest soil properties after 15 wk of greenhouse growth. Treatments included a control of no amendment; agricultural lime; inorganic N, P, and K; three types of boiler ash; biosolids application rates equivalent to 70, 140, 210, and 280 kg available N ha(-1); and boiler ash co-applied with biosolids. All of the by-products treatments showed biomass production that was equal to or greater than inorganic fertilizer and lime treatments. A trend of increased biomass with increasing rates of biosolids was observed. Soil P concentration increased with increasing rates of biosolids application. None of the by-products treatments resulted in plant tissue metal concentrations greater than metal concentrations of plant tissue amended with inorganic amendments. Biosolids, boiler ash, and the co-application of biosolids and boiler ash together on forest soils were as beneficial to plant growth as inorganic fertilizers.

  16. Uptake and translocation of lesser-chlorinated polychlorinated biphenyls (PCBs) in whole hybrid poplar plants after hydroponic exposure.

    PubMed

    Liu, Jiyan; Schnoor, Jerald L

    2008-11-01

    Mono-, di-, tri-, and tetra-chlorinated polychlorinated biphenyls (PCBs) are congeners with greater volatility which remain in air, soils and sediments requiring treatment. In this study, the fate of these PCBs was investigated within whole poplar plants (Populus deltoides x nigra, DN34) with application for a treatment system such as a confined disposal facility for dredged material. Whole hybrid poplars were exposed hydroponically to a mixture of five congeners, common in the environment, having one to four chlorine atoms per molecule. Results indicated that PCB 3, 15, 28, 52, and 77 were initially sorbed to the root systems. The root concentration factor (RCF) of PCBs during the exposure was calculated and correlated with K(ow). PCB congeners were taken up by the roots of hybrid poplar, and the translocation of PCBs to stems was inversely related to congener hydrophobicity (log K(ow)). PCB 3 and 15 were translocated to the upper stem at small but significant rates. PCB 28 was translocated to the wood of the main stem but no farther; translocation from the roots was not detected for PCB 52 and 77. The distribution of PCBs within poplars was determined, and mass balances were completed to within 15% for each chemical except for PCB 3, the most volatile congener. This is the first report on the transport of PCBs through whole plants designed for use in treatment at disposal facilities.

  17. Uptake and Translocation of Lesser-Chlorinated Polychlorinated Biphenyls (PCBs) in Whole Hybrid Poplar Plants after Hydroponic Exposure

    PubMed Central

    Liu, Jiyan; Schnoor, Jerald L.

    2009-01-01

    Mono-, di-, tri-, and tetra-chlorinated polychlorinated biphenyls (PCBs) are congeners with greater volatility which remain in air, soils and sediments requiring treatment. In this study, the fate of these PCBs was investigated within whole poplar plants (Populus deltoides x nigra, DN34) with application for a treatment system such as a confined disposal facility for dredged material. Whole hybrid poplars were exposed hydroponically to a mixture of five congeners, common in the environment, having one to four chlorine atoms per molecule. Results indicated that PCB 3, 15, 28, 52, and 77 were initially sorbed to the root systems. The Root Concentration Factor (RCF) of PCBs during the exposure was calculated and correlated with Kow. PCB congeners were taken up by the roots of hybrid poplar, and the translocation of PCBs to stems was inversely related to congener hydrophobicity (Log Kow). PCB 3 and 15 were translocated to the upper stem at small but significant rates. PCB 28 was translocated to the wood of the main stem but no farther; translocation from the roots was not detected for PCB 52 and 77. The distribution of PCBs within poplars was determined, and mass balances were completed to within 15% for each chemical except for PCB 3, the most volatile congener. This is the first report on the transport of PCBs through whole plants designed for use in treatment at disposal facilities. PMID:18793792

  18. Effect of site on growth of hybrid poplar clones planted on a commercial scale

    SciTech Connect

    Woods, R.F.

    1985-01-01

    Two-, four-, and five-year height growth of Populus hybrids were measured over a full range of USDA Soil Conservation Service natural and altered soil drainage and texture classes on fields planted by Packaging Corporation of America using intensive culture. Five clonal trials with 40 clones each were examined for 4-year height growth and were analyzed for effects of site, clone and site by clone interaction. Substantial soil variability became an important factor on the previously-planted sites and had to be considered in the statistical analysis. Ten clones with the best 4-year height growth were identified. Four- and five-year height growth of several of the most promising clones from the clonal trials were then examined over a range of soil/site conditions in commercial-size plantations using a tillage plus herbicide management system. Two-year growth was evaluated using a no-till system. Height growth under both management systems significantly decreased on sites other than those with the most optimum conditions for agricultural crops. Using the results from the clonal trials and the two tillage system studies, soil/site factors which affected establishment and early growth of hybrid popular plantings were summarized and outlined in detail, and a practical field guide was formulated for evaluating the potential of agricultural fields for the intensive culture of hybrid poplars.

  19. Investigating the drought-stress response of hybrid poplar genotypes by metabolite profiling.

    PubMed

    Barchet, Genoa L H; Dauwe, Rebecca; Guy, Robert D; Schroeder, William R; Soolanayakanahally, Raju Y; Campbell, Malcolm M; Mansfield, Shawn D

    2014-11-01

    Drought stress is perhaps the most commonly encountered abiotic stress plants experience in the natural environment, and it is one of the most important factors limiting plant productivity. Here, we employed untargeted metabolite profiling to examine four drought-stressed hybrid poplar (Populus spp.) genotypes for their metabolite content, using gas chromatography coupled to mass spectrometry. The primary objective of these analyses was to characterize the metabolite profile of poplar trees to assess relative drought resistance and to investigate the underlying biochemical mechanisms employed by the genotypes to combat drought. Metabolite profiling identified key metabolites that increased or decreased in relative abundance upon exposure to drought stress. Overall, amino acids, the antioxidant phenolic compounds catechin and kaempferol, as well as the osmolytes raffinose and galactinol exhibited increased abundance under drought stress, whereas metabolites involved in photorespiration, redox regulation and carbon fixation showed decreased abundance under drought stress. One clone in particular, Okanese, displayed unique responses to the imposed drought conditions. This clone was found to have higher leaf water potential, but lower growth rate relative to the other clones tested. Okanese also had lower accumulation of osmolytes such as raffinose, galactinol and proline, but higher overall levels of antioxidants such as catechin and dehydroascorbic acid. As such, it was proposed that osmotic adjustment as a mechanism for drought avoidance in this clone is not as well developed in comparison with the other clones investigated in this study, and that a possible alternative mechanism for the enhanced drought avoidance displayed by Okanese may be due to differential allocation of resources or better retention of water. PMID:24178982

  20. Investigating the drought-stress response of hybrid poplar genotypes by metabolite profiling.

    PubMed

    Barchet, Genoa L H; Dauwe, Rebecca; Guy, Robert D; Schroeder, William R; Soolanayakanahally, Raju Y; Campbell, Malcolm M; Mansfield, Shawn D

    2014-11-01

    Drought stress is perhaps the most commonly encountered abiotic stress plants experience in the natural environment, and it is one of the most important factors limiting plant productivity. Here, we employed untargeted metabolite profiling to examine four drought-stressed hybrid poplar (Populus spp.) genotypes for their metabolite content, using gas chromatography coupled to mass spectrometry. The primary objective of these analyses was to characterize the metabolite profile of poplar trees to assess relative drought resistance and to investigate the underlying biochemical mechanisms employed by the genotypes to combat drought. Metabolite profiling identified key metabolites that increased or decreased in relative abundance upon exposure to drought stress. Overall, amino acids, the antioxidant phenolic compounds catechin and kaempferol, as well as the osmolytes raffinose and galactinol exhibited increased abundance under drought stress, whereas metabolites involved in photorespiration, redox regulation and carbon fixation showed decreased abundance under drought stress. One clone in particular, Okanese, displayed unique responses to the imposed drought conditions. This clone was found to have higher leaf water potential, but lower growth rate relative to the other clones tested. Okanese also had lower accumulation of osmolytes such as raffinose, galactinol and proline, but higher overall levels of antioxidants such as catechin and dehydroascorbic acid. As such, it was proposed that osmotic adjustment as a mechanism for drought avoidance in this clone is not as well developed in comparison with the other clones investigated in this study, and that a possible alternative mechanism for the enhanced drought avoidance displayed by Okanese may be due to differential allocation of resources or better retention of water.

  1. Efficient Agrobacterium-mediated transformation of commercial hybrid poplar Populus nigra L. x P. maximowiczii A. Henry.

    PubMed

    Yevtushenko, Dmytro P; Misra, Santosh

    2010-03-01

    Many economically important species of Populus, especially those in sections Aigeiros and Tacamahaca, remain recalcitrant to genetic transformation. In this study, a simple and reliable protocol was developed for the efficient Agrobacterium-mediated transformation of a difficult-to-transform, but commercially viable, hybrid poplar Populus nigra L. x P. maximowiczii A. Henry (NM6). A plant transformation vector designed to express the beta-glucuronidase (GUS) gene was used to detect transformation events at early stages of plant regeneration and to optimize parameters affecting poplar transformation. The use of zeatin riboside in shoot-induction medium, regeneration of shoots via indirect organogenesis, and early selection pressure were the major modifications that drastically improved the efficiency of poplar transformation and minimized the number of untransformed regenerants. Transgenic shoots were routinely obtained 4-10 weeks after co-culture with A. tumefaciens, with a greater than 90% rate of plant recovery. Stable transgene integration, ranging from a single insertion to ten copies per genome, was confirmed by Southern blot analysis. The mean transformation frequency was 36.3% and about two-thirds of the lines had 1-2 transgene copies. Among the explants, petioles and leaves had a higher transformation frequency than did stem segments. Growth characteristics and the morphology of transgenic poplar plants were identical to untransformed controls. These findings will accelerate the development of P. nigra x P. maximowiczii plants with novel traits, and may also be useful to improve transformation procedures for other Populus species.

  2. Development and Validation of Marker-Aided Selection Methods for Wood Property Traits in Loblolly Pine and Hybrid Poplar

    SciTech Connect

    Tuskan, G.A.

    2001-06-20

    Wood properties influence pulp and paper quality. Certainly, overall pulp yields are directly related to the cellulose content, changes in hemicellulose content are associated with changes in pulp cohesiveness, and pulping efficiency is related to lignin content. Despite the importance of wood properties on product quality, little progress has been made in improving such traits because current methods of assessing wood and fiber characteristics are time-consuming, expensive, and often imprecise. Genetic improvement of wood and fiber properties has been further hampered by the large size of trees, delayed reproductive maturity and long harvest cycles. Recent developments in molecular genetics will help overcome the physical, economic and biological constraints in assessing and improving wood properties. Genetic maps consisting of numerous molecular markers are now available for loblolly pine and hybrid poplar. Such markers/maps may be used as part of a marker-aided selection and breeding effort or to expedite the isolation and characterization of genes and/or promoters that directly control wood properties. The objectives of this project are: (1) to apply new and rapid analytical techniques for assessing component wood properties to segregating F2 progeny populations of loblolly pine and hybrid poplar, (2) to map quantitative trait loci and identify molecular markers associated with wood properties in each of the above species and (3) to validate marker-aided selection methods for wood properties in loblolly pine and hybrid poplar.

  3. Emissions of volatile organic compounds from hybrid poplar depend on CO2 concentration and genotype

    NASA Astrophysics Data System (ADS)

    Eller, A. S.; de Gouw, J. A.; Monson, R. K.

    2010-12-01

    Hybrid poplar is a fast-growing tree species that is likely to be an important source of biomass for the production of cellulose-based biofuels and may influence regional atmospheric chemistry through the emission of volatile organic compounds (VOCs). We used proton-transfer reaction mass spectrometry to measure VOC emissions from the leaves of four different hybrid poplar genotypes grown under ambient (400 ppm) and elevated (650 ppm) carbon dioxide concentration (CO2). The purpose of this experiment was to determine whether VOC emissions are different among genotypes and whether these emissions are likely to change as atmospheric CO2 rises. Methanol and isoprene made up over 90% of the VOC emissions and were strongly dependent on leaf age, with young leaves producing primarily methanol and switching to isoprene production as they matured. Monoterpene emissions were small, but tended to be higher in young leaves. Plants grown under elevated CO2 emitted smaller quantities of both methanol and isoprene, but the magnitude of the effect was dependent on genotype. Isoprene emission rates from mature leaves dropped from ~35 to ~28 nmol m-2 s-1 when plants were grown under elevated CO2. Emissions from individuals grown under ambient CO2 varied more based on genotype than those grown under elevated CO2, which means that we might expect smaller differences between genotypes in the future. Genotype and CO2 also affected how much carbon (C) individuals allocated to the production of VOCs. The emission rate of C from VOCs was 0.5 - 2% of the rate at which C was assimilated via net photosynthesis. The % C emitted was strongly related to genotype; clones from crosses between Populus deltoides and P. trichocarpa (T x D) allocated a greater % of their C to VOC emissions than clones from crosses of P. deltoids and P. nigra (D x N). Individuals from all four genotypes allocated a smaller % of their C to the emission of VOCs when they were grown under elevated CO2. These results

  4. Factors Influencing the Tissue Culture and the Agrobacterium tumefaciens-Mediated Transformation of Hybrid Aspen and Poplar Clones

    PubMed Central

    De Block, Marc

    1990-01-01

    Tissue culture conditions and transformation have been established for both aspen and poplar. The use of previously described culture conditions resulted in shoot tip necrosis in the shoot cultures and necrosis of stem and leaf explants. Shoot tip necrosis could be overcome by buffering the medium with 2-(N-morpholino)ethanesulfonic acid and Ca-gluconate and by growing the shoots below 25°C. Necrosis of the explants was probably due to an accumulation of ammonium in the explants and could be overcome by adapting the NO3−/NH4+ ratio of the media. Stem explants of established shoot cultures of the aspen hybrid Populus alba × P. tremula and of the poplar hybrid Populus trichocarpa × P. deltoides were cocultivated with Agrobacterium strains having chimeric bar and neo genes on their disarmed tDNAs. Transformed aspen shoots were obtained from 30 to 40% of the explants, while transformed poplar shoots were obtained from 10% of the explants. Extracts from the transformed trees contained high phosphinotricin acetyltransferase and neomycin phosphotransferase activities, and the trees contained one to three copies of the chimeric genes. The transformed trees were completely resistant to the commercial preparations of the herbicide phosphinotricin (glufosinate), while control trees were not. Images Figure 1 Figure 2 Figure 4 PMID:16667565

  5. Short-term physiological and developmental responses to nitrogen availability in hybrid poplar.

    PubMed

    Cooke, Janice E K; Martin, Timothy A; Davis, John M

    2005-07-01

    Nitrogen fertilization induces dramatic changes in the growth and development of plants, including forest trees. In this study we examined short-term responses of hybrid poplar, Populus balsamifera ssp. trichocarpa x deltoides, to N fertilization. Glasshouse-grown saplings subjected to limiting, intermediate, and luxuriant levels of ammonium nitrate over a 28 d time course demonstrated rapid changes to whole-plant architecture and biomass accumulation. Nitrogen-associated shifts in allocation occurred in temporally distinct stages. Nitrogen availability modulated parameters that affect carbon gain, including light-saturated net photosynthesis and leaf area. These parameters were affected by N-induced changes to leaf maturation and senescence. Leaf area was also affected by N-induced sylleptic branch development. Genes encoding vegetative storage proteins and starch biosynthetic enzymes exhibited contrasting patterns of expression under differential N availability. A gene encoding a previously uncharacterized putative pectin methylesterase inhibitor displayed expression patterns comparable to the starch biosynthetic genes. The results of this study illustrate the phenotypic plasticity that P. balsamifera ssp. trichocarpa x deltoides exhibits in response to differential N availability.

  6. Uptake of trichloroethylene by hybrid poplar trees grown hydroponically in flow-through plant growth chambers

    SciTech Connect

    Orchard, B.J.; Doucette, W.J.; Chard, J.K.; Bugbee, B.

    2000-04-01

    Phytoremediation in being promoted as a cost-effective treatment option for shallow groundwater and soils contaminated with trichloroethylene (TCE). However, its effectiveness is difficult to assess due to contradictory reports regarding the magnitude of plant uptake and phytovolatilization. Experimental artifacts and plants stress, resulting from the use of static or low-flow plants growth laboratory systems, may account for part of the discrepancy. High exposure concentrations and short durations may also cause artifacts in laboratory studies. A dual-chamber plant growth system designed to minimize experimental artifacts was used to determine the uptake of [{sup 14}C] TCE by hydroponically grown hybrid poplar as a function of plant stress, exposure concentration, and exposure duration. The [{sup 14}]TCE recoveries ranged from 92 to 101% in 11 dosed chambers. Trichloroethylene mass equivalent concentrations in the shoot tissue were dependent on the amount of water transpired and the exposure concentration. Root-zone oxygen status die not significantly impact TCE uptake. Transpiration stream concentration factors (TSCFs) determined in these studies were independent of exposure duration and are much lower than those previously reported and predicted. The role of TSCF and other factors in estimating the significance of plant uptake in the phytoremediation of TCE-contaminated groundwater is discussed.

  7. Ozone Sensitivity in Hybrid Poplar Is Correlated with a Lack of Defense-Gene Activation1

    PubMed Central

    Riehl Koch, Jennifer; Scherzer, Amy J.; Eshita, Steven M.; Davis, Keith R.

    1998-01-01

    Ozone is a major gaseous pollutant thought to contribute to forest decline. Although the physiological and morphological responses of forest trees to ozone have been well characterized, little is known about the molecular basis for these responses. Our studies compared the response to ozone of ozone-sensitive and ozone-tolerant clones of hybrid poplar (Populus maximowizii × Populus trichocarpa) at the physiological and molecular levels. Gas-exchange analyses demonstrated clear differences between the ozone-sensitive clone 388 and the ozone-tolerant clone 245. Although ozone induced a decrease in photosynthetic rate and stomatal conductance in both clones, the magnitude of the decrease in stomatal conductance was significantly greater in the ozone-tolerant clone. RNA-blot analysis established that ozone-induced mRNA levels for phenylalanine ammonia-lyase, O-methyltransferase, a pathogenesis-related protein, and a wound-inducible gene were significantly higher in the ozone-tolerant than in the ozone-sensitive plants. Wound- and pathogen-induced levels of these mRNAs were also higher in the ozone-tolerant compared with the ozone-sensitive plants. The different physiological and molecular responses to ozone exposure exhibited by clones 245 and 388 suggest that ozone tolerance involves the activation of salicylic-acid- and jasmonic-acid-mediated signaling pathways, which may be important in triggering defense responses against oxidative stress. PMID:9847098

  8. A National Assessment of Promising Areas for Switchgrass, Hybrid Poplar, or Willow Energy Crop Production

    SciTech Connect

    Graham, R.L.; Walsh, M.E.

    1999-02-01

    The objective of this paper is to systematically assess the cropland acreage that could support energy crops and the expected farm gate and delivered prices of energy crops. The assessment is based on output from two modeling approaches: (1) the Oak Ridge County-Level Energy Crop (ORECCL) database (1996 version) and (2) the Oak Ridge Integrated Bioenergy Analysis System (ORIBAS). The former provides county-level estimates of suitable acres, yields, and farmgate prices of energy crops (switchgrass, hybrid poplar, willow) for all fifty states. The latter estimates delivered feedstock prices and quantities within a state at a fine resolution (1 km2) and considers the interplay between transportation costs, farmgate prices, cropland density, and facility demand. It can be used to look at any type of feedstock given the appropriate input parameters. For the purposes of this assessment, ORIBAS has been used to estimate farmgate and delivered switchgrass prices in 11 states (AL, FL, GA, IA, M N, MO, ND, NE, SC, SD, and TN). Because the potential for energy crop production can be considered from several perspectives, and is evolving as policies, economics and our basic understanding of energy crop yields and production costs change, this assessment should be viewed as a snapshot in time.

  9. Post-treatment mechanical refining as a method to improve overall sugar recovery of steam pretreated hybrid poplar.

    PubMed

    Dou, Chang; Ewanick, Shannon; Bura, Renata; Gustafson, Rick

    2016-05-01

    This study investigates the effect of mechanical refining to improve the sugar yield from biomass processed under a wide range of steam pretreatment conditions. Hybrid poplar chips were steam pretreated using six different conditions with or without SO2. The resulting water insoluble fractions were subjected to mechanical refining. After refining, poplar pretreated at 205°C for 10min without SO2 obtained a 32% improvement in enzymatic hydrolysis and achieved similar overall monomeric sugar recovery (539kg/tonne) to samples pretreated with SO2. Refining did not improve hydrolyzability of samples pretreated at more severe conditions, nor did it improve the overall sugar recovery. By maximizing overall sugar recovery, refining could partially decouple the pretreatment from other unit operations, and enable the use of low temperature, non-sulfur pretreatment conditions. The study demonstrates the possibility of using post-treatment refining to accommodate potential pretreatment process upsets without sacrificing sugar yields.

  10. Post-treatment mechanical refining as a method to improve overall sugar recovery of steam pretreated hybrid poplar.

    PubMed

    Dou, Chang; Ewanick, Shannon; Bura, Renata; Gustafson, Rick

    2016-05-01

    This study investigates the effect of mechanical refining to improve the sugar yield from biomass processed under a wide range of steam pretreatment conditions. Hybrid poplar chips were steam pretreated using six different conditions with or without SO2. The resulting water insoluble fractions were subjected to mechanical refining. After refining, poplar pretreated at 205°C for 10min without SO2 obtained a 32% improvement in enzymatic hydrolysis and achieved similar overall monomeric sugar recovery (539kg/tonne) to samples pretreated with SO2. Refining did not improve hydrolyzability of samples pretreated at more severe conditions, nor did it improve the overall sugar recovery. By maximizing overall sugar recovery, refining could partially decouple the pretreatment from other unit operations, and enable the use of low temperature, non-sulfur pretreatment conditions. The study demonstrates the possibility of using post-treatment refining to accommodate potential pretreatment process upsets without sacrificing sugar yields. PMID:26881333

  11. Boron accumulation and tolerance of hybrid poplars grown on a B-laden mixed paper mill waste landfill.

    PubMed

    Rees, Rainer; Robinson, Brett H; Rog, Christopher J; Papritz, Andreas; Schulin, Rainer

    2013-03-01

    Paper mill wastes are a mixture of by-products from pulp production and on-site energy production, consisting of paper mill sludge, ash and cinders. Landfilling of these highly boron (B) and heavy metal laden waste products carries environmental risks. Poplars have been successfully employed in the phytomanagement and hydraulic control of B contaminated sites. Here, we assess the performance of hybrid poplars on a paper-mill waste landfill, investigate the accumulation of B by the trees and explore the relationship between local-scale root growth and substrate properties. Leaf and root tissue samples were collected on three plots and analyzed for their chemical properties and root traits. Additionally, we sampled four soil cores in the vicinity of each of the trees and determined chemical and physical properties. Using a principal component analysis followed by a cluster analysis, we identified three substrate types. This method delineated the soil effects on tree survival and growth, although correlations with individual soil element concentrations were weak. Despite signs of B toxicity in some leaves, B was not the key limiting factor for poplar growth. Instead, Ca deficiency caused by a Mg:Ca imbalance was the primary reason for the poor performance of some trees. Root growth was not limited by toxicity effects of soil contaminants. Our results show that hybrid poplars perform well under the harsh growing conditions on a multi-contaminated, B-laden substrate in a hemiboreal climate. Exploiting the differences in the performance of the four clones in relation to the soil types, could increase the success of revegetation on this and other landfills. PMID:22727995

  12. Hydrolyzable tannins as "quantitative defenses": limited impact against Lymantria dispar caterpillars on hybrid poplar.

    PubMed

    Barbehenn, Raymond V; Jaros, Adam; Lee, Grace; Mozola, Cara; Weir, Quentin; Salminen, Juha-Pekka

    2009-04-01

    The high levels of tannins in many tree leaves are believed to cause decreased insect performance, but few controlled studies have been done. This study tested the hypothesis that higher foliar tannin levels produce higher concentrations of semiquinone radicals (from tannin oxidation) in caterpillar midguts, and that elevated levels of radicals are associated with increased oxidative stress in midgut tissues and decreased larval performance. The tannin-free leaves of hybrid poplar (Populus tremulaxP. alba) were treated with hydrolyzable tannins, producing concentrations of 0%, 7.5% or 15% dry weight, and fed to Lymantria dispar caterpillars. As expected, larvae that ingested control leaves contained no measurable semiquinone radicals in the midgut, those that ingested 7.5% hydrolyzable tannin contained low levels of semiquinone radicals, and those that ingested 15% tannin contained greatly increased levels of semiquinone radicals. Ingested hydrolyzable tannins were also partially hydrolyzed in the midgut. However, increased levels of semiquinone radicals in the midgut were not associated with oxidative stress in midgut tissues. Instead, it appears that tannin consumption was associated with increased metabolic costs, as measured by the decreased efficiency of conversion of digested matter to body mass (ECD). Decreased ECD, in turn, decreased the overall efficiency of conversion of ingested matter to body mass (ECI). Contrary to our hypothesis, L. dispar larvae were able to maintain similar growth rates across all tannin treatment levels, in part, because of compensatory feeding. We conclude that hydrolyzable tannins act as "quantitative defenses" in the sense that high levels appear to be necessary to increase levels of semiquinone radicals in the midguts of caterpillars. However, these putative resistance factors are not sufficient to decrease the performance of tannin-tolerant caterpillars such as L. dispar.

  13. How does drought tolerance compare between two improved hybrids of balsam poplar and an unimproved native species?

    PubMed

    Larchevêque, Marie; Maurel, Marion; Desrochers, Annie; Larocque, Guy R

    2011-03-01

    Poplars are one of the woody plants that are very sensitive to water stress, which may reduce the productivity of fast-growing plantations. Poplars can exhibit several drought tolerance strategies that may impact productivity differently. Trees from two improved hybrids, Populus balsamifera × Populus trichocarpa Torr. & Gray (clone B × T) and P. balsamifera × Populus maximowiczii A. Henry (clone B × M), having P. balsamifera L. as a parent and trees from native and unimproved P. balsamifera were subjected to a 1-month drying cycle in a growth chamber and then rewatered. The unimproved and native B clone maintained higher stomatal conductance (g(s)) than the hybrids, and high photosynthetic activity and transpiration, even when soil water content was nearly zero. As a result, both instantaneous water use efficiency (WUE(i)) and leaf carbon isotope composition (δ(13)C) indicated that this clone was less affected by drought than both hybrids at maximal drought stress. However, this clone shed its leaves when the drought threshold was exceeded, which implied a greater loss of productivity. The B × M hybrid showed a relatively conservative response to water stress, with the greatest decrease in transpiring versus absorbing surface (total leaf area to root biomass ratio). This clone was also the only one to develop new leaves after rewatering, and its total biomass production was not significantly decreased by drought. Among the two hybrids, clone B × T was the most vigorous, with the greatest transpiration (E(i)) and net CO(2) assimilation (A) rates, allowing for high biomass production. However, it had a more risky strategy under drought conditions by keeping its stomata open and high E(i) rates under moderate drought, resulting in a lower recovery rate after rewatering. The opposite drought response strategies of the two hybrids were reflected by clone B × T having lower WUE(i) values than clone B × M at maximal drought, with a

  14. Influence of brick air scrubber by-product on growth and development of corn and hybrid poplar.

    PubMed

    Thomas, Carla N; Bauerle, William L; Owino, Tom O; Chastain, John P; Klaine, Stephen J

    2007-03-01

    Studies were conducted to determine the effects of spent reagent from air pollution control scrubbers used at a brick manufacturing facility on emergence, growth, and physiological responses of corn and hybrid poplar plants. Scrubber by-product was obtained from General Shale Brick, Louisville, KY. Potting substrate was weighed and quantities of scrubber by-product were added to the substrate to obtain treatments of 0%, 6.25%, 12.5%, 25%, 50%, 75%, and 100% scrubber by-product (w:w) for the corn study. Each treatment mix was potted into nine replicate polyethylene pots and four corn seeds were sown per pot. The pots were randomized in a greenhouse at Clemson University and the number of seedlings emerging from each treatment, dark-adapted leaf chlorophyll a fluorescence, and shoot heights were measured at the end of a 21-day growth period. Then, dry shoot biomass was determined for plants from each treatment and plant tissues were analyzed for selected constituents. For the poplar study, nine-inch cuttings of hybrid poplar clone 15-29 (Populus trichocarpa x P. deltoides) and clone OP367 (P. deltoides x P. nigra) were planted in treatments of scrubber by-product-potting soil mixes of 0% , 5% , 10% , and 25% w:w. Leaf chlorophyll a fluorescence was measured over six weeks and cumulative leaf area, dry biomass, and nutrient content of tissues were determined upon harvest. Results of these studies indicate that percent seedling emergence for corn plants decreased with increasing scrubber by-product application rates. Application rates up to 12.5% scrubber by-product w:w had no adverse effect on corn seedling emergence. Shoot elongation, biomass production, and the status of the photosynthetic apparatus of the seedlings were also not severely impaired at applications below this level. A critical value of 58.2% w:w scrubber by-product was estimated to cause 25% inhibition of seedling emergence. Biomass production, cumulative leaf area, and chlorophyll a fluorescence of

  15. Spatial variability of soil carbon and nitrogen in two hybrid poplar-hay crop systems in southern Quebec, Canada

    NASA Astrophysics Data System (ADS)

    Winans, K. S.

    2013-12-01

    Canadian agricultural operations contribute approximately 8% of national GHG emissions each year, mainly from fertilizers, enteric fermentation, and manure management (Environment Canada, 2010). With improved management of cropland and forests, it is possible to mitigate GHG emissions through carbon (C) sequestration while enhancing soil and crop productivity. Tree-based intercropped (TBI) systems, consisting of a fast-growing woody species such as poplar (Populus spp.) planted in widely-spaced rows with crops cultivated between tree rows, were one of the technologies prioritized for investigation by the Agreement for the Agricultural Greenhouse Gases Program (AAGGP), because fast growing trees can be a sink for atmospheric carbon-dioxide (CO2) as well as a long-term source of farm income (Montagnini and Nair, 2004). However, there are relatively few estimates of the C sequestration in the trees or due to tree inputs (e.g., fine root turnover, litterfall that gets incorporated into SOC), and hybrid poplars grow exponentially in the first 8-10 years after planting. With the current study, our objectives were (1) to evaluate spatial variation in soil C and nitrogen (N) storage, CO2 and nitrogen oxide (N20), and tree and crop productivity for two hybrid poplar-hay intercrop systems at year 9, comparing TBI vs. non-TBI systems, and (2) to evaluate TBI systems in the current context of C trading markets, which value C sequestration in trees, unharvested crop components, and soils of TBI systems. The study results will provide meaningful measures that indicate changes due to TBI systems in the short-term and in the long-term, in terms of GHG mitigation, enhanced soil and crop productivity, as well as the expected economic returns in TBI systems.

  16. Gene expression patterns underlying changes in xylem structure and function in response to increased nitrogen availability in hybrid poplar.

    PubMed

    Plavcová, Lenka; Hacke, Uwe G; Almeida-Rodriguez, Adriana M; Li, Eryang; Douglas, Carl J

    2013-01-01

    Nitrogen availability has a strong influence on plant growth and development. In this study, we examined the effect of nitrogen availability on xylogenesis in hybrid poplar (Populus trichocarpa x deltoides H11-11). Saplings of hybrid poplar were fertilized for 33 d with either high or adequate levels of ammonium nitrate. We observed enhanced radial growth, wider vessels and fibres and thinner fibre walls in the secondary xylem of high N relative to adequate N plants. These anatomical differences translated into altered hydraulic properties with xylem being more transport efficient but also more vulnerable to drought-induced cavitation in high N plants. The changes in xylem structure and function were associated with differences in gene expression as revealed by the transcriptome analysis of the developing xylem region. We found 388 genes differentially expressed (fold change ±1.5, P-value ≤ 0.05), including a number of genes putatively involved in nitrogen and carbohydrate metabolism and various aspects of xylem cell differentiation. Several genes encoding known transcriptional regulators of secondary cell wall deposition were down-regulated in high N plants, corresponding with thinner secondary cell walls in these plants. The results of this study provide us with gene candidates potentially affecting xylem hydraulic and structural traits.

  17. Effect of hybrid poplar trees on microbial populations important to hazardous waste bioremediation

    SciTech Connect

    Jordahl, J.L.; Foster, L.; Schnoor, J.L.; Alvarez, P.J.J.

    1997-06-01

    Microbial concentrations of denitrifiers, pseudomonads, and monoaromatic petroleum hydrocarbon (BTX) degraders were significantly higher (p < 0.1) in soil samples from the rhizosphere of poplar trees than in adjacent agricultural soils, and atrazine degraders were found only in one rhizosphere sample. The relative abundance of these phenotypes (as a fraction of total heterotrophs) was not significantly different between rhizosphere and surrounding soils. Therefore, the poplar rhizosphere enhanced the growth of microbial populations that participate in natural bioremediation without exerting selective pressure for them.

  18. Reduced expression of the SHORT-ROOT gene increases the rates of growth and development in hybrid poplar and Arabidopsis.

    PubMed

    Wang, Jiehua; Andersson-Gunnerås, Sara; Gaboreanu, Ioana; Hertzberg, Magnus; Tucker, Matthew R; Zheng, Bo; Leśniewska, Joanna; Mellerowicz, Ewa J; Laux, Thomas; Sandberg, Göran; Jones, Brian

    2011-01-01

    SHORT-ROOT (SHR) is a well characterized regulator of cell division and cell fate determination in the Arabidopsis primary root. However, much less is known about the functions of SHR in the aerial parts of the plant. In this work, we cloned SHR gene from Populus trichocarpa (PtSHR1) as an AtSHR ortholog and down-regulated its expression in hybrid poplar (Populus tremula×P. tremuloides Michx-clone T89) in order to determine its physiological functions in shoot development. Sharing a 90% similarity to AtSHR at amino acid level, PtSHR1 was able to complement the Arabidopsis shr mutant. Down regulation of PtSHR1 led to a strong enhancement of primary (height) and secondary (girth) growth rates in the transgenic poplars. A similar approach in Arabidopsis showed a comparable accelerated growth and development phenotype. Our results suggest that the response to SHR could be dose-dependent and that a partial down-regulation of SHR could lead to enhanced meristem activity and a coordinated acceleration of plant growth in woody species. Therefore, SHR functions in plant growth and development as a regulator of cell division and meristem activity not only in the roots but also in the shoots. Reducing SHR expression in transgenic poplar was shown to lead to significant increases in primary and secondary growth rates. Given the current interest in bioenergy crops, SHR has a broader role as a key regulator of whole plant growth and development and SHR suppression has considerable potential for accelerating biomass accumulation in a variety of species. PMID:22194939

  19. Reduced expression of the SHORT-ROOT gene increases the rates of growth and development in hybrid poplar and Arabidopsis.

    PubMed

    Wang, Jiehua; Andersson-Gunnerås, Sara; Gaboreanu, Ioana; Hertzberg, Magnus; Tucker, Matthew R; Zheng, Bo; Leśniewska, Joanna; Mellerowicz, Ewa J; Laux, Thomas; Sandberg, Göran; Jones, Brian

    2011-01-01

    SHORT-ROOT (SHR) is a well characterized regulator of cell division and cell fate determination in the Arabidopsis primary root. However, much less is known about the functions of SHR in the aerial parts of the plant. In this work, we cloned SHR gene from Populus trichocarpa (PtSHR1) as an AtSHR ortholog and down-regulated its expression in hybrid poplar (Populus tremula×P. tremuloides Michx-clone T89) in order to determine its physiological functions in shoot development. Sharing a 90% similarity to AtSHR at amino acid level, PtSHR1 was able to complement the Arabidopsis shr mutant. Down regulation of PtSHR1 led to a strong enhancement of primary (height) and secondary (girth) growth rates in the transgenic poplars. A similar approach in Arabidopsis showed a comparable accelerated growth and development phenotype. Our results suggest that the response to SHR could be dose-dependent and that a partial down-regulation of SHR could lead to enhanced meristem activity and a coordinated acceleration of plant growth in woody species. Therefore, SHR functions in plant growth and development as a regulator of cell division and meristem activity not only in the roots but also in the shoots. Reducing SHR expression in transgenic poplar was shown to lead to significant increases in primary and secondary growth rates. Given the current interest in bioenergy crops, SHR has a broader role as a key regulator of whole plant growth and development and SHR suppression has considerable potential for accelerating biomass accumulation in a variety of species.

  20. Multiplication and growth of hybrid poplar (Populus alba × P. tremula) shoots on a hormone-free medium.

    PubMed

    Ziauka, J; Kuusienė, Sigutė

    2014-09-01

    The present study explored an alternative approach for poplar micropropagation, based on the restriction of gas exchange between inside and outside environments of culture vessel, rather than on the application of exogenous hormones. Apical and nodal stem segments (explants) excised from in vitro-developed shoots of hybrid white poplar (Populus alba L. × P. tremula L.) were incubated in either sealed (with Parafilm) or unsealed capped glass culture tubes (150 × 20 mm) on a hormone-free Woody Plant Medium. Shoot proliferation on apical explants was observed in sealed culture tubes but not in the unsealed ones; the difference between these two samples in respect of shoot number increased in the course of time and became threefold after three months of culture, with 3.2 ± 0.4 (mean ± SE) shoots per explant in the sealed tubes versus 1.1 ± 0.1 in the unsealed ones (for comparison, the mean shoot numbers on nodal explants were 2.4 ± 0.3 and 3.4 ± 0.4 in the unsealed and sealed culture tubes, respectively). Moreover, the shoots taken from the sealed culture tubes could be distinguished by superior shoot length, if compared to the shoots from the unsealed tubes, during the subsequent culture stage under uniform conditions. PMID:25194737

  1. Water consumption and biomass production of protoplast fusion lines of poplar hybrids under drought stress.

    PubMed

    Hennig, Anne; Kleinschmit, Jörg R G; Schoneberg, Sebastian; Löffler, Sonja; Janßen, Alwin; Polle, Andrea

    2015-01-01

    Woody crops such as poplars (Populus) can contribute to meet the increasing energy demand of a growing human population and can therefore enhance the security of energy supply. Using energy from biomass increases ecological sustainability as biomass is considered to play a pivotal role in abating climate change. Because areas for establishing poplar plantations are often confined to marginal sites drought tolerance is one important trait for poplar genotypes cultivated in short rotation coppice. We tested 9-month-old plants of four tetraploid Populus tremula (L.) × P. tremuloides (Michx.) lines that were generated by protoplast fusion and their diploid counterpart for water consumption and drought stress responses in a greenhouse experiment. The fusion lines showed equivalent or decreased height growth, stem biomass and total leaf area compared to the diploid line. The relative height increment of the fusion lines was not reduced compared to the diploid line when the plants were exposed to drought. The fusion lines were distinguished from the diploid counterpart by stomatal characteristics such as increased size and lower density. The changes in the stomatal apparatus did not affect the stomatal conductance. When exposed to drought the carbohydrate concentrations increased more strongly in the fusion lines than in the diploid line. Two fusion lines consumed significantly less water with regard to height growth, producing equivalent or increased relative stem biomass under drought compared to their diploid relative. Therefore, these tetraploid fusion lines are interesting candidates for short rotation biomass plantation on dry sites. PMID:26042130

  2. Boron accumulation and toxicity in hybrid poplar (Populus nigra × euramericana).

    PubMed

    Rees, Rainer; Robinson, Brett H; Menon, Manoj; Lehmann, Eberhard; Günthardt-Goerg, Madeleine S; Schulin, Rainer

    2011-12-15

    Poplars accumulate high B concentrations and are thus used for the phytomanagement of B contaminated soils. Here, we performed pot experiments in which Populus nigra × euramericana were grown on a substrate with B concentrations ranging from 13 to 280 mg kg(-1) as H(3)BO(3). Salix viminalis, Brassica juncea, and Lupinus albus were grown under some growing conditions for comparison. Poplar growth was unaffected at soil B treatment levels up to 93 mg kg(-1). Growth was progressively reduced at levels of 168 and 280 mg kg(-1). None of the other species survived at these substrate B levels. At leaf B concentrations <900 mg kg(-1) only <10% of the poplar leaf area showed signs of toxicity. Neutron radiography revealed that chlorotic leaf tissues had B concentrations of 1000-2000 mg kg(-1), while necrotic tissues had >2000 mg kg(-1). Average B concentrations of up to 3500 mg kg(-1) were found in leaves, while spots within leaves had concentrations >7000 mg kg(-1), showing that B accumulation in leaf tissue continued even after the onset of necrosis. The B accumulation ability of P. nigra × euramericana is associated with B hypertolerance in the living tissue and storage of B in dead leaf tissue. PMID:22050628

  3. Water consumption and biomass production of protoplast fusion lines of poplar hybrids under drought stress.

    PubMed

    Hennig, Anne; Kleinschmit, Jörg R G; Schoneberg, Sebastian; Löffler, Sonja; Janßen, Alwin; Polle, Andrea

    2015-01-01

    Woody crops such as poplars (Populus) can contribute to meet the increasing energy demand of a growing human population and can therefore enhance the security of energy supply. Using energy from biomass increases ecological sustainability as biomass is considered to play a pivotal role in abating climate change. Because areas for establishing poplar plantations are often confined to marginal sites drought tolerance is one important trait for poplar genotypes cultivated in short rotation coppice. We tested 9-month-old plants of four tetraploid Populus tremula (L.) × P. tremuloides (Michx.) lines that were generated by protoplast fusion and their diploid counterpart for water consumption and drought stress responses in a greenhouse experiment. The fusion lines showed equivalent or decreased height growth, stem biomass and total leaf area compared to the diploid line. The relative height increment of the fusion lines was not reduced compared to the diploid line when the plants were exposed to drought. The fusion lines were distinguished from the diploid counterpart by stomatal characteristics such as increased size and lower density. The changes in the stomatal apparatus did not affect the stomatal conductance. When exposed to drought the carbohydrate concentrations increased more strongly in the fusion lines than in the diploid line. Two fusion lines consumed significantly less water with regard to height growth, producing equivalent or increased relative stem biomass under drought compared to their diploid relative. Therefore, these tetraploid fusion lines are interesting candidates for short rotation biomass plantation on dry sites.

  4. Molecular cloning, expression analysis and subcellular localization of four DELLA genes from hybrid poplar.

    PubMed

    Liu, Sian; Xuan, Lei; Xu, Li-An; Huang, Minren; Xu, Meng

    2016-01-01

    Gibberellic acid (GA) signaling regulates diverse aspects of plant growth and developmental processes. The DELLA repressors of GA signaling are named for an N-terminal conserved DELLA domain. In this study, four genes encoding DELLA proteins, PeRGA1, PeRGA2, PeGAI1 and PeGAI2, were isolated and characterized in poplar. A gene structural analysis revealed that the DELLA genes were all intron-free. Multiple protein sequence alignments revealed that these proteins contained seven highly conserved domains: the DELLA domain, the TVHYNP domain, leucine heptad repeat I (LHR I), the VHIID domain, leucine heptad repeat II (LHR II), the PFYRE domain, and the SAM domain. Temporal expression patterns of these genes were profiled during the adventitious root development of poplar. The four DELLA genes were expressed in root, stem and leaf in a dynamic manner. The subcellular localization demonstrated that these DELLA genes were mainly localized to the nucleus. These results suggest that the four DELLA genes may play diverse regulatory roles in the adventitious root, stem and leaf development of poplar, and contribute to improving our understanding of conserved and divergent aspects of DELLA proteins that restrain GA signaling in various species. PMID:27478746

  5. Boron accumulation and toxicity in hybrid poplar (Populus nigra × euramericana).

    PubMed

    Rees, Rainer; Robinson, Brett H; Menon, Manoj; Lehmann, Eberhard; Günthardt-Goerg, Madeleine S; Schulin, Rainer

    2011-12-15

    Poplars accumulate high B concentrations and are thus used for the phytomanagement of B contaminated soils. Here, we performed pot experiments in which Populus nigra × euramericana were grown on a substrate with B concentrations ranging from 13 to 280 mg kg(-1) as H(3)BO(3). Salix viminalis, Brassica juncea, and Lupinus albus were grown under some growing conditions for comparison. Poplar growth was unaffected at soil B treatment levels up to 93 mg kg(-1). Growth was progressively reduced at levels of 168 and 280 mg kg(-1). None of the other species survived at these substrate B levels. At leaf B concentrations <900 mg kg(-1) only <10% of the poplar leaf area showed signs of toxicity. Neutron radiography revealed that chlorotic leaf tissues had B concentrations of 1000-2000 mg kg(-1), while necrotic tissues had >2000 mg kg(-1). Average B concentrations of up to 3500 mg kg(-1) were found in leaves, while spots within leaves had concentrations >7000 mg kg(-1), showing that B accumulation in leaf tissue continued even after the onset of necrosis. The B accumulation ability of P. nigra × euramericana is associated with B hypertolerance in the living tissue and storage of B in dead leaf tissue.

  6. Water consumption and biomass production of protoplast fusion lines of poplar hybrids under drought stress

    PubMed Central

    Hennig, Anne; Kleinschmit, Jörg R. G.; Schoneberg, Sebastian; Löffler, Sonja; Janßen, Alwin; Polle, Andrea

    2015-01-01

    Woody crops such as poplars (Populus) can contribute to meet the increasing energy demand of a growing human population and can therefore enhance the security of energy supply. Using energy from biomass increases ecological sustainability as biomass is considered to play a pivotal role in abating climate change. Because areas for establishing poplar plantations are often confined to marginal sites drought tolerance is one important trait for poplar genotypes cultivated in short rotation coppice. We tested 9-month-old plants of four tetraploid Populus tremula (L.) × P. tremuloides (Michx.) lines that were generated by protoplast fusion and their diploid counterpart for water consumption and drought stress responses in a greenhouse experiment. The fusion lines showed equivalent or decreased height growth, stem biomass and total leaf area compared to the diploid line. The relative height increment of the fusion lines was not reduced compared to the diploid line when the plants were exposed to drought. The fusion lines were distinguished from the diploid counterpart by stomatal characteristics such as increased size and lower density. The changes in the stomatal apparatus did not affect the stomatal conductance. When exposed to drought the carbohydrate concentrations increased more strongly in the fusion lines than in the diploid line. Two fusion lines consumed significantly less water with regard to height growth, producing equivalent or increased relative stem biomass under drought compared to their diploid relative. Therefore, these tetraploid fusion lines are interesting candidates for short rotation biomass plantation on dry sites. PMID:26042130

  7. Enhancement in the enzymatic digestibility of hybrid poplar with poor residual hemicelluloses after Na2SO3 pretreatment.

    PubMed

    Jiang, Hua; Han, Binbin; Ge, Jianhong

    2015-03-01

    The aim of this work was to illustrate the contributions of delignification and the introduced sulfonic groups on the enzymatic digestibility of the Na2SO3-pretreated hybrid poplar with poor residual hemicelluloses (HPPRH). The higher the content of the introduced sulfonic group in the pretreated HPPRH was, the higher its enzymatic digestibility could be achieved. Delignification was favorable to increasing the content of sulfonic group in the pretreated HPPRH. The introduced sulfonic group contributed much more to the total glucose yield at low level of residual lignin. The introduced sulfonic groups could contribute 17.30% of total glucose yield (92.70%) and delignification could do 38.43% of it. Meanwhile, the delignification rate and the sulfonic group content in the pretreated HPRH were 59.88% and 283.51mmolkg(-1) lignin, respectively. Therefore, the sulfonic group introduced on the pretreated lignocellulosics could improve the enzymatic digestibility and make the sulfite process effective. PMID:25621727

  8. Effects of thermo-hygro-mechanical densification on the surface characteristics of trembling aspen and hybrid poplar wood veneers

    NASA Astrophysics Data System (ADS)

    Diouf, Papa Niokhor; Stevanovic, Tatjana; Cloutier, Alain; Fang, Chang-Hua; Blanchet, Pierre; Koubaa, Ahmed; Mariotti, Nicolas

    2011-02-01

    The effect of thermo-hygro-mechanical (THM) densification temperature on the surface color, roughness, wettability, and chemical composition of trembling aspen (Populus tremuloides) and hybrid poplar (Populus maximowiczii × P. balsamifera) veneers was investigated. Veneers were subjected to four THM densification temperatures (160 °C, 180 °C, 200 °C, and 220 °C). Veneer color darkened with increasing THM densification temperature. Surface roughness decreased between 160 °C and 200 °C. Wettability decreased after THM densification, but no significant difference was found between treated specimens. ATR-FTIR and XPS results confirmed that THM densification caused major chemical changes in veneer surfaces, and more pronounced at temperatures higher than 160 °C.

  9. Geographic Information System (GIS) evaluation of dedicated hybrid poplar fuel supply for a 50 MW electricity plant

    SciTech Connect

    Withrow, K.D.; Wichert, D.

    1996-12-31

    An energy geographic information system (GIS) was created for Wisconsin and used to evaluate a proposed 50 MW biomass fueled electricity plant. The GIS analysis supported a project proposal submitted to DOE`s Biomass for Rural Development solicitation. In steady-state operation, the proposed plant would burn 50% dedicated short-rotation woody crops (SRWC) and 50% crop residues. A model of promising agricultural land for growing hybrid poplar trees was created. Marginal agricultural land was sought to minimize competition with traditional crops. Two types of promising land were identified based on different marginality criteria. Approximately 356,850 acres of promising land within 50 miles of the plant site were identified based on characteristics of the land (slope, water table depth, bedrock depth and flooding potential). An additional 489,990 acres of promising land were identified based on soil fertility, for which an index incorporating cation exchange capacity and water holding capacity was created. Approximately 3.8 percent of this promising land would have to be converted to hybrid poplar production to meet the entire dedicated biomass input to the electricity plant assuming a yield of 5 tons/acre/year in steady state. Suitability of infrastructure and other features (electric lines, electric service territories, roads, railroads, land cover) to support a new biomass plant in the Plover area were also evaluated using the Wisconsin energy GIS. The methodology is presented as a model to be applied for other biomass and renewable energy plants. Development of an energy GIS and use of ARC/Info software was found to be a useful tool for biomass analysis, although some limitations were created by the structure and accuracy of the data sets, especially STATSGO. Further research and data development would increase the reliability of estimates produced using GIS technology and applying a similar methodology.

  10. Tree and stand water fluxes of hybrid poplar clone (Populus nigra x P. maximowiczii) in short rotation coppice culture

    NASA Astrophysics Data System (ADS)

    Fischer, M.; Trnka, M.; Kucera, J.; Zalud, Z.

    2010-09-01

    This study reports on evapotranspiration and tree water use in short rotation coppice culture of hybrid poplar (Populus nigra x P. maximowiczii) for biomass energy in the Czech Republic. The high density poplar plantation (10 000 trees per ha) was established in 2003 on arable land in Czech-Moravian Highland (49°32´ N, 16°15´ E, 530 m a.s.l.) and has been coppiced in rotation period of 7 years. Firstly, evapotranspiration of the stand has been estimated by applying the Bowen ratio-energy budget method, which is considered as reliable, robust, quite simple and inexpensive technique with comparable results to eddy covariance and lysimeters. The gaps in evapotranspiration diurnal patterns caused by limitation of the bowen ratio method were filled with simple linear regression model based on relation between potential and actual evapotranspiration with regard to soil water availability and leaf area index and thus the daily, monthly and seasonal totals could be calculated. The amount of evapotranspiration during the growing season 2009 (1 March - 31 October) was 593 mm with highest monthly total 116 mm in June. Mean daily water loss over the season reached 2.43 mm per day. During the hot summer day, the maximal value 5.73 mm per day, which presented 89 % of potential evapotranspiration calculated by Penman equation, was recorded with a peak rate 0.94 mm per hour. Secondly, the transpiration was measured by sap flow tissue heat balance techniques on four individual trees with greatest stem diameters (11 - 12 cm d.b.h.) and height of 12 - 12.5 m. Relatively high transpiration values by the poplars were found during the measured part of growing season (18 June - 31 October), with maximum and mean daily transpiration of 44.41 dm3 and 16.69 dm3 per day, respectively. The seasonal transpiration of the most vigorous from the investigated individuals amounted 2542 dm3. Because in this study we didńt evaluate the transpiration of thinner trees (technical features of sap

  11. Phasing Variants in Poplar Trees using a Hybrid of Short & Long Read Technologies

    SciTech Connect

    Schackwitz, Wendy; Martin, Joel; Lipzen, Anna; Pennacchio, Len; Tuskan, Gerald

    2013-03-26

    Poplar grow throughout the West coast & are adapted to extremely variable conditions. To examine what allows for this wide range of growth conditions, Jerry Tuskan's team has collected 1000 different individuals from British Columbia to California. In 2009, three Common Gardens were established where each individual was cloned in triplicate. Nearly all of these trees have been sequenced using short read technology, revealing a huge degree of variation in genotype. Correlating this genomic variation to phenotype would be greatly be strengthened if the variants could be phased into long haplotype blocks.

  12. Green revolution trees: semidwarfism transgenes modify gibberellins, promote root growth, enhance morphological diversity, and reduce competitiveness in hybrid poplar.

    PubMed

    Elias, Ani A; Busov, Victor B; Kosola, Kevin R; Ma, Cathleen; Etherington, Elizabeth; Shevchenko, Olga; Gandhi, Harish; Pearce, David W; Rood, Stewart B; Strauss, Steven H

    2012-10-01

    Semidwarfism has been used extensively in row crops and horticulture to promote yield, reduce lodging, and improve harvest index, and it might have similar benefits for trees for short-rotation forestry or energy plantations, reclamation, phytoremediation, or other applications. We studied the effects of the dominant semidwarfism transgenes GA Insensitive (GAI) and Repressor of GAI-Like, which affect gibberellin (GA) action, and the GA catabolic gene, GA 2-oxidase, in nursery beds and in 2-year-old high-density stands of hybrid poplar (Populus tremula × Populus alba). Twenty-nine traits were analyzed, including measures of growth, morphology, and physiology. Endogenous GA levels were modified in most transgenic events; GA(20) and GA(8), in particular, had strong inverse associations with tree height. Nearly all measured traits varied significantly among genotypes, and several traits interacted with planting density, including aboveground biomass, root-shoot ratio, root fraction, branch angle, and crown depth. Semidwarfism promoted biomass allocation to roots over shoots and substantially increased rooting efficiency with most genes tested. The increased root proportion and increased leaf chlorophyll levels were associated with changes in leaf carbon isotope discrimination, indicating altered water use efficiency. Semidwarf trees had dramatically reduced growth when in direct competition with wild-type trees, supporting the hypothesis that semidwarfism genes could be effective tools to mitigate the spread of exotic, hybrid, and transgenic plants in wild and feral populations.

  13. A vegetative storage protein homolog is expressed in the growing shoot apex of hybrid poplar.

    PubMed

    Lawrence, S D; Greenwood, J S; Korhnak, T E; Davis, J M

    1997-10-01

    The ability of poplars (Populus deltoides Bartr. ex Marsh., and Populus trichocarpa Torr. and Gray) to sequester nitrogen in stems in preparation for winter has been associated with the massive accumulation of protein bodies in the bark and xylem ray parenchyma. These protein bodies contain a bark storage protein (BSP) that can account for up to 30% of the total soluble bark protein during the winter months. Perhaps the plant's ability to efficiently cycle nitrogen through BSP is an important aspect of its growth potential. Sequence analysis of BSP led to the identification of a leaf-associated homolog, win4, which was initially isolated because its transcript increased in abundance upon mechanical wounding. The goal of this work was to characterize this putative leaf-associated vegetative storage protein, and determine whether it might perform a storage role in vivo. Antibodies, produced against protein synthesized upon over-expression of the win4 coding region in Escherichia coli, were used to examine the relative abundance of WIN4 protein in response to supplemental nitrogen, and during development. The transcript and protein were most abundant in the youngest leaves and also increased with nitrogen fertilization. Immunolocalization of the protein was performed and showed that WIN4 was associated with cells surrounding the vasculature, and cells of the lower epidermis and stipules of immature leaves. Under moderate nitrogen fertilization regimes, WIN4 accounted for only about 2% of total soluble leaf protein; however, given the cellular specificity and enhancement with nitrogen, the protein is regulated in a manner similar to other vegetative storage proteins. Since poplar is amenable to DNA transformation and regeneration, it is now possible to ask direct questions about the role these proteins play in nitrogen storage in rapidly expanding or in dormant tissue. This type of analysis could determine whether these proteins mainly ameliorate the toxic effects of

  14. Biomass carbon, nitrogen and phosphorus stocks in hybrid poplar buffers, herbaceous buffers and natural woodlots in the riparian zone on agricultural land.

    PubMed

    Fortier, Julien; Truax, Benoit; Gagnon, Daniel; Lambert, France

    2015-05-01

    In many temperate agricultural areas, riparian forests have been converted to cultivated land, and only narrow strips of herbaceous vegetation now buffer many farm streams. The afforestation of these riparian zones has the potential to increase carbon (C) storage in agricultural landscapes by creating a new biomass sink for atmospheric CO2. Occurring at the same time, the storage of nitrogen (N) and phosphorus (P) in plant biomass, is an important water quality function that may greatly vary with types of riparian vegetation. The objectives of this study were (1) to compare C, N and P storage in aboveground, belowground and detrital biomass for three types of riparian vegetation cover (9-year-old hybrid poplar buffers, herbaceous buffers and natural woodlots) across four agricultural sites and (2) to determine potential vegetation cover effects on soil nutrient supply rate in the riparian zone. Site level comparisons suggest that 9-year-old poplar buffers have stored 9-31 times more biomass C, 4-10 times more biomass N, and 3-7 times more biomass P than adjacent non managed herbaceous buffers, with the largest differences observed on the more fertile sites. The conversion of these herbaceous buffers to poplar buffers could respectively increase C, N and P storage in biomass by 3.2-11.9 t/ha/yr, 32-124 kg/ha/yr and 3.2-15.6 kg/ha/yr, over 9 years. Soil NO3 and P supply rates during the summer were respectively 57% and 66% lower in poplar buffers than in adjacent herbaceous buffers, potentially reflecting differences in nutrient storage and cycling between the two buffer types. Biomass C ranged 49-160 t/ha in woodlots, 33-110 t/ha in poplar buffers and 3-4 t/ha in herbaceous buffers. Similar biomass C stocks were found in the most productive poplar buffer and three of the four woodlots studied. Given their large and varied biomass C stocks, conservation of older riparian woodlots is equally important for C balance management in farmland. In addition, the

  15. Biomass carbon, nitrogen and phosphorus stocks in hybrid poplar buffers, herbaceous buffers and natural woodlots in the riparian zone on agricultural land.

    PubMed

    Fortier, Julien; Truax, Benoit; Gagnon, Daniel; Lambert, France

    2015-05-01

    In many temperate agricultural areas, riparian forests have been converted to cultivated land, and only narrow strips of herbaceous vegetation now buffer many farm streams. The afforestation of these riparian zones has the potential to increase carbon (C) storage in agricultural landscapes by creating a new biomass sink for atmospheric CO2. Occurring at the same time, the storage of nitrogen (N) and phosphorus (P) in plant biomass, is an important water quality function that may greatly vary with types of riparian vegetation. The objectives of this study were (1) to compare C, N and P storage in aboveground, belowground and detrital biomass for three types of riparian vegetation cover (9-year-old hybrid poplar buffers, herbaceous buffers and natural woodlots) across four agricultural sites and (2) to determine potential vegetation cover effects on soil nutrient supply rate in the riparian zone. Site level comparisons suggest that 9-year-old poplar buffers have stored 9-31 times more biomass C, 4-10 times more biomass N, and 3-7 times more biomass P than adjacent non managed herbaceous buffers, with the largest differences observed on the more fertile sites. The conversion of these herbaceous buffers to poplar buffers could respectively increase C, N and P storage in biomass by 3.2-11.9 t/ha/yr, 32-124 kg/ha/yr and 3.2-15.6 kg/ha/yr, over 9 years. Soil NO3 and P supply rates during the summer were respectively 57% and 66% lower in poplar buffers than in adjacent herbaceous buffers, potentially reflecting differences in nutrient storage and cycling between the two buffer types. Biomass C ranged 49-160 t/ha in woodlots, 33-110 t/ha in poplar buffers and 3-4 t/ha in herbaceous buffers. Similar biomass C stocks were found in the most productive poplar buffer and three of the four woodlots studied. Given their large and varied biomass C stocks, conservation of older riparian woodlots is equally important for C balance management in farmland. In addition, the

  16. Physiology and Thermal Imaging of Poplar Hybrids with Varying Temperature Tolerance

    NASA Astrophysics Data System (ADS)

    Ibsen, P.; Van Leeuwen, W. J. D.; McCorkel, J.; Barron-Gafford, G.; Moore, D. J.

    2014-12-01

    : Plants growing in high temperatures may suffer from reduced photosynthetic efficiency, increased water demand and thermal damage to tissue. Leaves may mitigate heat stress through physiological or physical strategies which include minimizing heat load, maximizing evaporative cooling or biochemical stabilization. In this study, leaf temperature of wild-type and genetically modified (GM) poplar trees was monitored using a thermal infrared camera and fine wire thermocouples. The GM trees did not have the capacity to produce the compound isoprene, hypothesized to biochemically protect plants against heat stress. One genotype had GM process applied, but retained isoprene making capacity (empty-vector). Temperature of ambient air and of an artificial leaf of similar size/color were also monitored. Photosynthesis and transpiration were measured using an infra-red gas analyzer. Leaf reflectance in an integrating sphere was determined using a spectrometer. Leaf temperature was maintained close to or below air temperature and was always lower than the fake (non-transpiring leaf). Different genetic lines maintained different leaf temperatures, especially during peak temperature in the mid afternoon. The variance in leaf temperature is explored in relation to its effects on transpiration, photosynthesis and growth across isoprene and non-isoprene emitting trees.

  17. Transcriptome profiles of hybrid poplar (Populus trichocarpa × deltoides) reveal rapid changes in undamaged, systemic sink leaves after simulated feeding by forest tent caterpillar (Malacosoma disstria).

    PubMed

    Philippe, Ryan N; Ralph, Steven G; Mansfield, Shawn D; Bohlmann, Jörg

    2010-11-01

    Poplar has been established as a model tree system for genomic research of the response to biotic stresses. This study describes a series of induced transcriptome changes and the associated physiological characterization of local and systemic responses in hybrid poplar (Populus trichocarpa × deltoides) after simulated herbivory. • Responses were measured in local source (LSo), systemic source (SSo), and systemic sink (SSi) leaves following application of forest tent caterpillar (Malacosoma disstria) oral secretions to mechanically wounded leaves. • Transcriptome analyses identified spatially and temporally dynamic, distinct patterns of local and systemic gene expression in LSo, SSo and SSi leaves. Galactinol synthase was strongly and rapidly upregulated in SSi leaves. Genome analyses and full-length cDNA cloning established an inventory of poplar galactinol synthases. Induced changes of galactinol and raffinose oligosaccharides were detected by anion-exchange high-pressure liquid chromatography. • The LSo leaves showed a rapid and strong transcriptome response compared with a weaker and slower response in adjacent SSo leaves. Surprisingly, the transcriptome response in distant, juvenile SSi leaves was faster and stronger than that observed in SSo leaves. Systemic transcriptome changes of SSi leaves have signatures of rapid change of metabolism and signaling, followed by later induction of defense genes.

  18. Predicting the effect of deep-rooted hybrid poplars on the groundwater flow system at a large-scale phytoremediation site.

    SciTech Connect

    Quinn, J. J.; Negri, M. C.; Hinchman, R. R.; Moos, L. P.; Wozniak, J. B.; Gatliff, E. G.; Applied Natural Sciences, Inc.

    2001-03-01

    Estimating the effect of phreatophytes on the groundwater flow field is critical in the design or evaluation of a phytoremediation system. Complex hydrogeological conditions and the transient water use rates of trees require the application of numerical modeling to address such issues as hydraulic containment, seasonality, and system design. In 1999, 809 hybrid poplars and willows were planted to phytoremediate the 317 and 319 Areas of Argonne National Laboratory near Chicago, Illinois. Contaminants of concern are volatile organic compounds and tritium. The site hydrogeology is a complex framework of glacial tills interlaced with sands, gravels, and silts of varying character, thickness, and lateral extent. A total of 420 poplars were installed using a technology to direct the roots through a 25-ft (8-m)-thick till to a contaminated aquifer. Numerical modeling was used to simulate the effect of the deep-rooted poplars on this aquifer of concern. Initially, the best estimates of input parameters and boundary conditions were determined to provide a suitable match to historical transient ground-water flow conditions. The model was applied to calculate the future effect of the developing deep-rooted poplars over a 6 year period. The first 3 years represent the development period of the trees. In the fourth year, canopy closure is expected to occur; modeling continues through the first 3 years of the mature plantation. Monthly estimates of water use by the trees are incorporated. The modeling suggested that the mature trees in the plantation design will provide a large degree of containment of groundwater from the upgradient source areas, despite the seasonal nature of the trees' water consumption. The results indicate the likely areas where seasonal dewatering of the aquifer may limit the availability of water for the trees. The modeling also provided estimates of the residence time of groundwater in the geochemically altered rhizosphere of the plantation.

  19. Plantation forestry under global warming: hybrid poplars with improved thermotolerance provide new insights on the in vivo function of small heat shock protein chaperones.

    PubMed

    Merino, Irene; Contreras, Angela; Jing, Zhong-Ping; Gallardo, Fernando; Cánovas, Francisco M; Gómez, Luis

    2014-02-01

    Climate-driven heat stress is a key factor affecting forest plantation yields. While its effects are expected to worsen during this century, breeding more tolerant genotypes has proven elusive. We report here a substantial and durable increase in the thermotolerance of hybrid poplar (Populus tremula×Populus alba) through overexpression of a major small heat shock protein (sHSP) with convenient features. Experimental evidence was obtained linking protective effects in the transgenic events with the unique chaperone activity of sHSPs. In addition, significant positive correlations were observed between phenotype strength and heterologous sHSP accumulation. The remarkable baseline levels of transgene product (up to 1.8% of total leaf protein) have not been reported in analogous studies with herbaceous species. As judged by protein analyses, such an accumulation is not matched either by endogenous sHSPs in both heat-stressed poplar plants and field-grown adult trees. Quantitative real time-polymerase chain reaction analyses supported these observations and allowed us to identify the poplar members most responsive to heat stress. Interestingly, sHSP overaccumulation was not associated with pleiotropic effects that might decrease yields. The poplar lines developed here also outperformed controls under in vitro and ex vitro culture conditions (callus biomass, shoot production, and ex vitro survival), even in the absence of thermal stress. These results reinforce the feasibility of improving valuable genotypes for plantation forestry, a field where in vitro recalcitrance, long breeding cycles, and other practical factors constrain conventional genetic approaches. They also provide new insights into the biological functions of the least understood family of heat shock protein chaperones.

  20. Phenotypic and developmental plasticity of xylem in hybrid poplar saplings subjected to experimental drought, nitrogen fertilization, and shading.

    PubMed

    Plavcová, Lenka; Hacke, Uwe G

    2012-11-01

    Variation in xylem structure and function has been extensively studied across different species with a wide taxonomic, geographical, and ecological coverage. In contrast, our understanding of how xylem of a single species can adjust to different growing condition remains limited. Here phenotypic and developmental plasticity in xylem traits of hybrid poplar (Populus trichocarpa×deltoides) was studied. Clonally propagated saplings were grown under experimental drought, nitrogen fertilization, and shade for >30 d. Xylem hydraulic and anatomical traits were subsequently examined in stem segments taken from two different vertical positions along the plant's main axis. The experimental treatments affected growth and development and induced changes in xylem phenotype. Across all treatments, the amount of leaf area supported by stem segments (A(L)) scaled linearly with stem native hydraulic conductivity (K (native)), suggesting that the area of assimilating leaves is constrained by the xylem transport capacity. In turn, K (native) was mainly driven by the size of xylem cross-sectional area (A(X)). Moreover, the structural and functional properties of xylem varied significantly. Vulnerability to cavitation, measured as the xylem pressure inducing 50% loss of conductivity (P50), ranged from -1.71 MPa to -0.15 MPa in saplings subjected to drought and nitrogen fertilization, respectively. Across all treatments and stem segment positions, P50 was tightly correlated with wood density. In contrast, no relationship between P50 and xylem-specific conductivity (K (S)) was observed. The results of this study enhance our knowledge of plant hydraulic acclimation and provide insights into common trade-offs that exist in xylem structure and function.

  1. Continuous steam hydrolysis of tulip poplar

    SciTech Connect

    Fieber, C.; Colcord, A.R.; Faass, S.; Muzzy, J.D.; Roberts, R.S.

    1982-08-01

    To produce ethanol from hardwood it is desirable to fractionate the hardwood in order to produce a relatively pure cellulosic pulp for dilute acid hydrolysis. An experimental investigation of continuous steam hydrolysis of tulip poplar wood chips indicates that over 90% of the lignin present can be extracted by 0.1N sodium hydroxide, resulting in a cellulose pulp containing over 90% hexosan. The study was performed using a Stake Technology, Ltd., continuous digester rated at one oven dry ton per hour of wood chips. The yields of hexosans, hexoses, xylan, xylose, lignin, furfural, acetic acid and methanol were determined as a function of residence time and steam pressure in the digester. The information provides a basis for establishing a material and energy balance for a hardwood to ethanol plant.

  2. The low fertility of Chinese white poplar: dynamic changes in anatomical structure, endogenous hormone concentrations, and key gene expression in the reproduction of a naturally occurring hybrid.

    PubMed

    Ma, Kaifeng; Song, Yuepeng; Huang, Zhen; Lin, Liyuan; Zhang, Zhiyi; Zhang, Deqiang

    2013-03-01

    KEY MESSAGE : We report that low fertility during intraspecific hybridization in Chinese white poplar was caused by prefertilization barriers, reduced ovules, and embryonic abortion. Hormone concentrations and gene expression patterns were also evaluated during the fertilization process. Hybrid vigor holds tremendous potential for yield increases and trait improvement; however, some hybridization combinations within Populus show very low fertility. To explore the causes of this low fertility in intraspecific hybridization of Chinese white poplar, we examined anatomical structure, hormone levels and expression of key genes in two unique crossing combinations of Populus × tomentosa "Pt02" × P. × tomentosa "LM50", and (P. × tomentosa × P. alba cv. bolleana "Ptb") × P. × tomentosa "LM50". The seed set potential in the intraspecific hybridization P. × tomentosa "Pt02" × P. × tomentosa "LM50" was quite low, which was likely caused by prefertilization barriers, reduced ovule numbers, and embryonic abortion in ovaries. During intraspecific hybridization, we found reduced indoleacetic acid (IAA) in pistils, which may cause pollen tube deformations and increased IAA in heart-stage embryos, which may affect embryo development. Gibberellin A3 (GA3) decreased from the zygote dormancy stage to globular-stage embryos, which may be caused by failure of fertilization in specific embryos. The maximum zeatin (Z) concentration was found in heart-stage embryos, but Z concentrations quickly decreased, which may affect endosperm development. Increasing concentrations of abscisic acid (ABA) during zygote dormancy and eight-cell proembryo stages likely induced abscission of the infructescence. High ABA concentrations also regulated embryo maturity. Measurement of genes expression showed that high expression of SRK and/or SLG may result in rejection of pollen by stigmatic papillae through a mechanism, reminiscent of self-incompatibility. Also, low expression of

  3. Yields of ten and eleven year-old hybrid poplars in the north central United States. Final report

    SciTech Connect

    Netzer, D.; Tolsted, D.

    1998-12-31

    The objective of this research is to determine commercially attainable biomass yields given the best site tending possible under the constraints of this extensive network. Biomass yields are reported from the best clones planted in one acre blocks on 8 sites over the four states. Biomass yields are presented of short rotation intensively cultured poplar plantations established in Wisconsin, Minnesota, North and South Dakota during 1987--88. It was reported at that time that the mean annual increment had not peaked in the plantations. Growth measurements were continued through the 1997 growing season when the plantations had completed their 10th and 11th growing season.

  4. Green Revolution Trees: Semidwarfism Transgenes Modify Gibberellins, Promote Root Growth, Enhance Morphological Diversity, and Reduce Competitiveness in Hybrid Poplar1[C][W][OA

    PubMed Central

    Elias, Ani A.; Busov, Victor B.; Kosola, Kevin R.; Ma, Cathleen; Etherington, Elizabeth; Shevchenko, Olga; Gandhi, Harish; Pearce, David W.; Rood, Stewart B.; Strauss, Steven H.

    2012-01-01

    Semidwarfism has been used extensively in row crops and horticulture to promote yield, reduce lodging, and improve harvest index, and it might have similar benefits for trees for short-rotation forestry or energy plantations, reclamation, phytoremediation, or other applications. We studied the effects of the dominant semidwarfism transgenes GA Insensitive (GAI) and Repressor of GAI-Like, which affect gibberellin (GA) action, and the GA catabolic gene, GA 2-oxidase, in nursery beds and in 2-year-old high-density stands of hybrid poplar (Populus tremula × Populus alba). Twenty-nine traits were analyzed, including measures of growth, morphology, and physiology. Endogenous GA levels were modified in most transgenic events; GA20 and GA8, in particular, had strong inverse associations with tree height. Nearly all measured traits varied significantly among genotypes, and several traits interacted with planting density, including aboveground biomass, root-shoot ratio, root fraction, branch angle, and crown depth. Semidwarfism promoted biomass allocation to roots over shoots and substantially increased rooting efficiency with most genes tested. The increased root proportion and increased leaf chlorophyll levels were associated with changes in leaf carbon isotope discrimination, indicating altered water use efficiency. Semidwarf trees had dramatically reduced growth when in direct competition with wild-type trees, supporting the hypothesis that semidwarfism genes could be effective tools to mitigate the spread of exotic, hybrid, and transgenic plants in wild and feral populations. PMID:22904164

  5. Inoculation of hybrid poplar with the endophytic bacterium Enterobacter sp. 638 increases biomass but does not impact leaf level physiology

    SciTech Connect

    Rogers, A.; McDonald, K.; Muehlbauer, M. F.; Hoffman, A.; Koenig, K.; Newman, L.; Taghavi, S.; Van Der Lelie, D.

    2011-01-01

    Endophytic bacteria have been shown to provide several advantages to their host, including enhanced growth. Inoculating biofuel species with endophytic bacteria is therefore an attractive option to increase the productivity of biofuel feedstocks. Here, we investigated the effect of inoculating hard wood cuttings of Populus deltoides Bartr. x Populus. nigra L. clone OP367 with Enterobacter sp. 638. After 17 weeks, plants inoculated with Enterobacter sp. 638 had 55% greater total biomass than un-inoculated control plants. Study of gas exchange and fluorescence in developing and mature leaves over a diurnal cycle and over a 5 week measurement campaign revealed no effects of inoculation on photosynthesis, stomatal conductance, photosynthetic water use efficiency or the maximum and operating efficiency of photosystem II. However, plants inoculated with Enterobacter sp. 638 had a canopy that was 39% larger than control plants indicating that the enhanced growth was fueled by increased leaf area, not by improved physiology. Leaf nitrogen content was determined at two stages over the 5 week measurement period. No effect of Enterobacter sp. 638 on leaf nitrogen content was found indicating that the larger plants were acquiring sufficient nitrogen. Enterobacter sp. 638 lacks the genes for N{sub 2} fixation, therefore the increased availability of nitrogen likely resulted from enhanced nitrogen acquisition by the 84% larger root system. These data show that Enterobacter sp. 638 has the potential to dramatically increase productivity in poplar. If fully realized in the production environment, these results indicate that an increase in the environmental and economic viability of poplar as a biofuel feedstock is possible when inoculated with endophytic bacteria like Enterobacter sp. 638.

  6. Genetic Modification of Short Rotation Poplar Biomass Feedstock for Efficient Conversion to Ethanol

    SciTech Connect

    Dinus, R.J.

    2000-08-30

    The Bioenergy Feedstock Development Program, Environmental Sciences Division, Oak Ridge National Laboratory is developing poplars (Populus species and hybrids) as sources of renewable energy, i.e., ethanol. Notable increases in adaptability, volume productivity, and pest/stress resistance have been achieved via classical selection and breeding and intensified cultural practices. Significant advances have also been made in the efficiencies of harvesting and handling systems. Given these and anticipated accomplishments, program leaders are considering shifting some attention to genetically modifying feedstock physical and chemical properties, so as to improve the efficiency with which feedstocks can be converted to ethanol. This report provides an in-depth review and synthesis of opportunities for and feasibilities of genetically modifying feedstock qualities via classical selection and breeding, marker-aided selection and breeding, and genetic transformation. Information was collected by analysis of the literature, with emphasis on that published since 1995, and interviews with prominent scientists, breeders, and growers. Poplar research is well advanced, and literature is abundant. The report therefore primarily reflects advances in poplars, but data from other species, particularly other shortrotation hardwoods, are incorporated to fill gaps. An executive summary and recommendations for research, development, and technology transfer are provided immediately after the table of contents. The first major section of the report describes processes most likely to be used for conversion of poplar biomass to ethanol, the various physical and chemical properties of poplar feedstocks, and how such properties are expected to affect process efficiency. The need is stressed for improved understanding of the impact of change on both overall process and individual process step efficiencies. The second part documents advances in trait measurement instrumentation and methodology

  7. Forest tent caterpillars (Malacosoma disstria) induce local and systemic diurnal emissions of terpenoid volatiles in hybrid poplar (Populus trichocarpa x deltoides): cDNA cloning, functional characterization, and patterns of gene expression of (-)-germacrene D synthase, PtdTPS1.

    PubMed

    Arimura, Gen-Ichiro; Huber, Dezene P W; Bohlmann, Jörg

    2004-02-01

    Feeding forest tent caterpillars (FTCs) induced local and systemic diurnal emissions of (-)-germacrene D, along with (E)-beta-ocimene, linalool, (E)-4,8-dimethyl-1,3,7-nonatriene (DMNT), benzene cyanide, and (E,E)-alpha-farnesene, from leaves of hybrid poplar. FTC feeding induced substantially higher levels of volatiles in local and systemic leaves than did mechanical wounding. A full-length poplar sesquiterpene synthase cDNA (PtdTPS1) was isolated and functionally identified as (-)-germacrene D synthase. Expression of PtdTPS1, expression of genes of early, intermediate and late steps in terpenoid biosynthesis, and expression of a lipoxygenase gene (PtdLOX1) were analyzed in local FTC-infested and systemic leaves. Transcript levels of PtdTPS1 and PtdLOX1 were strongly increased in response to herbivory. PtdTPS1 was also induced by mechanical wounding or by methyl jasmonate (MeJA) treatment. FTC feeding did not affect transcript levels of 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR), 1-deoxy-d-xylulose 5-phosphate reductoisomerase (DXR), and isoprene synthase (IPS). Two other TPS genes, PtdTPS2 and PtTPS3, and farnesyl diphosphate synthase were only very transiently induced. These results illustrate differential expression of terpenoid pathway genes in response to insect feeding and a key function of (-)-germacrene D synthase PtdTPS1 for herbivore-induced local and systemic volatile emissions in hybrid poplar. FTC-induced transcripts of PtdTPS1 followed diurnal rhythm. Spatial patterns of FTC-induced PtdTPS1 transcript accumulation revealed acropetal but not basipetal direction of the systemic response. Implications for tritrophic poplar-FTC-predator/parasitoid interactions are discussed. PMID:14756770

  8. Vegetation classification in southern pine mixed hardwood forests using airborne scanning laser point data.

    SciTech Connect

    McGaughey, Robert J.; Reutebuch, Stephen E.

    2012-09-01

    Forests of the southeastern United States are dominated by a relatively small number of conifer species. However, many of these forests also have a hardwood component composed of a wide variety of species that are found in all canopy positions. The presence or absence of hardwood species and their position in the canopy often dictates management activities such as thinning or prescribed burning. In addition, the characteristics of the under- and mid-story layers, often dominated by hardwood species, are key factors when assessing suitable habitat for threatened and endangered species such as the Red Cockaded Woodpecker (Picoides borealis) (RCW), making information describing the hardwood component important to forest managers. General classification of cover types using LIDAR data has been reported (Song et al. 2002, Brennan and Webster 2006) but most efforts focusing on the identification of individual species or species groups rely on some type of imagery to provide more complete spectral information for the study area. Brandtberg (2007) found that use of intensity data significantly improved LIDAR detection and classification of three leaf-off deciduous eastern species: oaks (Quercus spp.), red maple (Acer rubrum L.), and yellow poplar (Liriodendron tulipifera L.). Our primary objective was to determine the proportion of hardwood species present in the canopy using only the LIDAR point data and derived products. However, the presence of several hardwood species that retain their foliage through the winter months complicated our analyses. We present two classification approaches. The first identifies areas containing hardwood and softwood (conifer) species (H/S) and the second identifies vegetation with foliage absent or present (FA/FP) at the time of the LIDAR data acquisition. The classification results were used to develop predictor variables for forest inventory models. The ability to incorporate the proportion of hardwood and softwood was important to the

  9. Effects of in vitro ozone treatment on proteolysis of purified rubisco from two hybrid poplar clones. [Populus maximowizii x trichocarpa

    SciTech Connect

    Landry, L.G.; Pell, E.J. )

    1989-04-01

    Plants exposed to ozone (O{sub 3}) exhibited symptoms of premature senescence, including early decline in quantity of rubisco. O{sub 3}-induced oxidation may cause changes in protein conformation of rubisco, resulting in enhanced proteolysis. To test this hypothesis, rubisco was purified from two hybrid clones of Populus maximowizii x trichocarpa, clones 388 and 245, and treated in vitro with O{sub 3} or air. Rubisco was then challenged with bromelain, papain, chymotrypsin, carboxypeptidase A, or endoproteinase Glu-C and percent degradation measured by SDS-PAGE and densitometric scanning of the gels. Degree of rubisco sensitivity to oxidation may be related to available sulfhydryl (SH) groups on the protein. The number of SH groups in native and denatured rubisco was measured for purified rubisco of both clones by DTNB titration method. The relationship between sensitivity to proteolysis and number and availability of SH groups is discussed.

  10. Biotechnology and poplars: A US perspective

    SciTech Connect

    Layton, P.; Ostry, M.E.

    1988-01-01

    An increasing number of researchers are investigating Populus spp. using biotechnical research techniques. Its commercial importance, genome size, and relative ease of propagation from cell and tissue culture are contributing to the increase. Significant progress has been made in refining cell and tissue culture methods and identifying the associated genetic variability. Researchers have identified somaclones with acceptable tolerance levels to several herbicides and diseases. Genetic transformation of poplars has progressed with the development of several gene transfer methods (Agrobacterium, electroporation, and microprojectiles) and the incorporation of commercially important genes (aroA and potato inhibitor II). Research on gene promoters has progressed, and two putative wound inducible promoters have been identified in hybrid poplar. Although federal research dollars in FY 1989 are low for forest biotechnology, research is continuing. Federal research dollars may rise again in 1990 to aid the exploitation of biotechnology to enhance poplar growth and production, especially for use as energy feedstocks. 13 refs., 1 fig.

  11. Gaseous NO2 effects on epidermis and stomata related physiochemical characteristics of hybrid poplar leaves: chemical elements composition, stomatal functions, photosynthesis and respiration

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mechanisms controlling effects of gaseous nitrogen dioxide on epidermis and stomata dynamics, and photosynthesis and respirations processes are still not fully understood. In this study, we used poplar as a model plant and investigated the effects of gaseous nitrogen dioxide (4 microliters per lite...

  12. Overexpression of gibberellin 20-oxidase1 from Pinus densiflora results in enhanced wood formation with gelatinous fiber development in a transgenic hybrid poplar.

    PubMed

    Park, Eung-Jun; Kim, Hyun-Tae; Choi, Young-Im; Lee, Chanhui; Nguyen, Van Phap; Jeon, Hyung-Woo; Cho, Jin-Seong; Funada, Ryo; Pharis, Richard P; Kurepin, Leonid V; Ko, Jae-Heung

    2015-11-01

    Gibberellins (GAs) are important regulators of plant shoot biomass growth, and GA 20-oxidase (GA20ox) is one of the major regulatory enzymes in the GA biosynthetic pathway. Previously, we showed that the expression levels of a putative GA20ox1 (i.e., PdGA20ox1) in stem tissue of 3-month-old seedlings of 12 families of Pinus densiflora were positively correlated with stem diameter growth across those same families growing in an even-aged 32-year-old pine forest (Park EJ, Lee WY, Kurepin LV, Zhang R, Janzen L, Pharis RP (2015) Plant hormone-assisted early family selection in Pinus densiflora via a retrospective approach. Tree Physiol 35:86-94). To further investigate the molecular function of this gene in the stem wood growth of forest trees, we produced transgenic poplar lines expressing PdGA20ox1 under the control of the 35S promoter (designated as 35S::PdGA20ox1). By age 3 months, most of the 35S::PdGA20ox1 poplar trees were showing an exceptional enhancement of stem wood growth, i.e., up to fourfold increases in stem dry weight, compared with the nontransformed control poplar plants. Significant increases in endogenous GA1, its immediate precursor (GA20) and its catabolite (GA8) in elongating internode tissue accompanied the increased stem growth in the transgenic lines. Additionally, the development of gelatinous fibers occurred in vertically grown stems of the 35S::PdGA20ox1 poplars. An analysis of the cell wall monosaccharide composition of the 35S::PdGA20ox1 poplars showed significant increases in xylose and glucose contents, indicating a qualitative increase in secondary wall depositions. Microarray analyses led us to find a total of 276 probe sets that were upregulated (using threefold as a threshold) in the stem tissues of 35S::PdGA20ox1 poplars relative to the controls. 'Cell organization or biogenesis'- and 'cell wall'-related genes were overrepresented, including many of genes that are involved in cell wall modification. Several transcriptional

  13. Microwave Moisture Measurement System for Hardwood Lumber Drying

    SciTech Connect

    Moschler, William W; Hanson, Gregory R

    2008-09-01

    The goal of this project was to develop a prototype microwave-based moisture sensor system suitable for the kiln drying of hardwood lumber. The moisture sensors developed are battery powered and are capable of communicating with a host kiln control system via spread spectrum wireless communications. We have developed two designs of the sensors working at 4.5 to 6 GHz with linear response to moisture content (MC) over a range of 6-100%. These sensors allow us to make a swept frequency microwave transmission measurement through a small area of a board. Using the prototype electronics and sensors, we have obtained measurements of MC over the above MC range for red oak and yellow poplar with standard deviations of less than 1.5% MC. We have developed data for board thickness corrections and for temperature corrections for the MC measurement system.

  14. Contrasting colonization and plant growth promoting capacity between wild type and gfp-derative of the endophyte Pseudomonas putida W619 in hybrid poplar

    SciTech Connect

    Weyens N.; van der Lelie D.; Boulet, J.; Adriaensen, D.; Timmermans, J.-P.; Prinsen, E.; Van Oevelen, S.; D"Haen, J.; Smeets, K.; Taghavi, S.; Vangronsveld, J.

    2011-06-09

    This study aims to investigate the colonization of poplar by the endophyte Pseudomonas putida W619 and its capacity to promote plant growth. Poplar cuttings were inoculated with P. putida W619 (wild-type or gfp-labelled). The colonization of both strains was investigated and morphological, physiological and biochemical parameters were analyzed to evaluate plant growth promotion. Inoculation with P. putida W619 (wild-type) resulted in remarkable growth promotion, decreased activities of antioxidative defence related enzymes, and reduced stomatal resistance, all indicative of improved plant health and growth in comparison with the non-inoculated cuttings. In contrast, inoculation with gfp-labelled P. putida W619 did not promote growth; it even had a negative effect on plant health and growth. Furthermore, compared to the wildtype strain, colonization by the gfp-labelled P. putida W619::gfp1 was much lower; it only colonized the rhizosphere and root cortex while the wild-type strain also colonized the root xylem vessels. Despite the strong plant growth promoting capacity of P. putida W619 (wild-type), after gfp labelling its growth promoting characteristics disappeared and its colonization capacity was strongly influenced; for these reasons gfp labelling should be applied with sufficient caution.

  15. Assessments of the efficacy of a long-term application of a phytoremediation system using hybrid poplar trees at former oil tank farm sites.

    PubMed

    El-Gendy, Ahmed S; Svingos, Sotero; Brice, Donald; Garretson, Joel H; Schnoor, Jerald

    2009-05-01

    A poplar tree-phytoremediation system was installed at former refinery and tank farm sites in Cabin Creek, West Virginia, to cleanup petroleum-contaminated-soils and groundwater. Groundwater and soils in both sites were sampled and analyzed on a regular basis to monitor changes in contaminant concentration since 1999. The concentration of benzene, toluene, ethylbenzene, xylene, and gasoline range organics (GRO) decreased an average of 81%, 90%, 67%, 78%, and 82%, respectively, in the lower soil horizons and 34%, 84%, 12%, 19%, and 59%, respectively, in groundwater. In addition, concentrations of oxygen, methane, and carbon dioxide in soil gas demonstrated that tree roots dewatered soils and allowed penetration of oxygen deep into the soil profile, creating necessary conditions for rhizosphere bioremediation. Although required clean-up time can limit phytoremediation, it has proven to be a cost-effective strategy for site improvement if imminent pathways for human exposure and risk are not an issue.

  16. Thermal Insulation from Hardwood Residues

    NASA Astrophysics Data System (ADS)

    Sable, I.; Grinfelds, U.; Vikele, L.; Rozenberga, L.; Zeps, M.; Luguza, S.

    2015-11-01

    Adequate heat is one of the prerequisites for human wellbeing; therefore, building insulation is required in places where the outside temperature is not suitable for living. The climate change, with its rising temperatures and longer dry periods, promotes enlargement of the regions with conditions more convenient for hardwood species than for softwood species. Birch (Betula pendula) is the most common hardwood species in Latvia. The aim of this work was to obtain birch fibres from wood residues of plywood production and to form low-density thermal insulation boards. Board formation and production was done in the presence of water; natural binder, fire retardant and fungicide were added in different concentrations. Board properties such as density, transportability or resistance to particulate loss, thermal conductivity and reaction to fire were investigated. This study included thermal insulation boards with the density of 102-120 kg/m3; a strong correlation between density and the binder amount was found. Transportability also improved with the addition of a binder, and 0.1-0.5% of the binder was the most appropriate amount for this purpose. The measured thermal conductivity was in the range of 0.040-0.043 W/(m·K). Fire resistance increased with adding the fire retardant. We concluded that birch fibres are applicable for thermal insulation board production, and it is possible to diversify board properties, changing the amount of different additives.

  17. Relationship between genotype and soil environment during colonization of poplar roots by mycorrhizal and endophytic fungi.

    PubMed

    Karliński, Leszek; Rudawska, Maria; Kieliszewska-Rokicka, Barbara; Leski, Tomasz

    2010-06-01

    Poplars are among the few tree genera that can develop both ectomycorrhizal (ECM) and arbuscular (AM) associations; however, variable ratios of ECM/AM in dual mycorrhizal colonizations were observed in the roots of a variety of poplar species and hybrids. The objective of our study was to analyze the effect of internal and external factors on growth and dual AM and ECM colonization of poplar roots in three 12-15-year-old common gardens in Poland. We also analyzed the abundance of nonmycorrhizal fungal endophytes in the poplar roots. The Populus clones comprised black poplars (Populus deltoides and P. deltoides x Populus nigra), balsam poplars (Populus maximowiczii x Populus trichocarpa), and a hybrid of black and balsam poplars (P. deltoides x P. trichocarpa). Of the three sites that we studied, one was located in the vicinity of a copper smelter, where soil was contaminated with copper and lead. Poplar root tip abundance, mycorrhizal colonization, and soil fungi biomass were lower at this heavily polluted site. The total mycorrhizal colonization and the ratio of ECM and AM colonization differed among the study sites and according to soil depth. The influence of Populus genotype was significantly pronounced only within the individual study sites. The contribution of nonmycorrhizal fungal endophytes differed among the poplar clones and was higher at the polluted site than at the sites free of pollution. Our results indicate that poplar fine root abundance and AM and ECM symbiosis are influenced by environmental conditions. Further studies of different site conditions are required to characterize the utility of poplars for purposes such as the phytoremediation of polluted sites. PMID:19921284

  18. Relationship between genotype and soil environment during colonization of poplar roots by mycorrhizal and endophytic fungi.

    PubMed

    Karliński, Leszek; Rudawska, Maria; Kieliszewska-Rokicka, Barbara; Leski, Tomasz

    2010-06-01

    Poplars are among the few tree genera that can develop both ectomycorrhizal (ECM) and arbuscular (AM) associations; however, variable ratios of ECM/AM in dual mycorrhizal colonizations were observed in the roots of a variety of poplar species and hybrids. The objective of our study was to analyze the effect of internal and external factors on growth and dual AM and ECM colonization of poplar roots in three 12-15-year-old common gardens in Poland. We also analyzed the abundance of nonmycorrhizal fungal endophytes in the poplar roots. The Populus clones comprised black poplars (Populus deltoides and P. deltoides x Populus nigra), balsam poplars (Populus maximowiczii x Populus trichocarpa), and a hybrid of black and balsam poplars (P. deltoides x P. trichocarpa). Of the three sites that we studied, one was located in the vicinity of a copper smelter, where soil was contaminated with copper and lead. Poplar root tip abundance, mycorrhizal colonization, and soil fungi biomass were lower at this heavily polluted site. The total mycorrhizal colonization and the ratio of ECM and AM colonization differed among the study sites and according to soil depth. The influence of Populus genotype was significantly pronounced only within the individual study sites. The contribution of nonmycorrhizal fungal endophytes differed among the poplar clones and was higher at the polluted site than at the sites free of pollution. Our results indicate that poplar fine root abundance and AM and ECM symbiosis are influenced by environmental conditions. Further studies of different site conditions are required to characterize the utility of poplars for purposes such as the phytoremediation of polluted sites.

  19. Hardwood Lumber Scaling [and] Hardwood Log Scaling and Grading. Slide Scripts.

    ERIC Educational Resources Information Center

    Wooten, D. E.; Touse, Robert D.

    These two slide scripts, part of a series of slide scripts designed for use in vocational agriculture classes, deal with scaling and grading hardwood logs and lumber. The first script includes narrations for use with 39 slides, which explain the techniques of scaling and grading hardwood logs, and the second script contains the narrations to…

  20. A Guide to Bottomland Hardwood Restoration

    USGS Publications Warehouse

    Allen, J.A.; Keeland, B.D.; Stanturf, J.A.; Clewell, A.F.; Kennedy, H.E.

    2001-01-01

    During the last century, a large amount of the original bottomland hardwood forest area in the United States has been lost, with losses greatest in the Lower Mississippi Alluvial Valley and East Texas. With a holistic approach in mind, this manual describes methods to restore bottomland hardwoods in the lower Midwest, including the Lower Mississippi Alluvial Valley and the southeastern United States. Bottomland hardwoods in this guide include not only the hardwood species that predominate in most forested floodplains of the area but also the softwood species such as baldcypress that often co-occur. General restoration planning considerations are discussed as well as more specific elements of bottomland hardwood restoration such as species selection, site preparation, direct seeding, planting of seedlings, and alternative options for revegetation. We recognize that most projects will probably fall more within the realm of reforestation or afforestation rather than a restoration, as some site preparation and the planting of seeds or trees may be the only actions taken. Practical information needed to restore an area is provided in the guide, and it is left up to the restorationist to decide how complete the restoration will be. Postplanting and monitoring considerations are also addressed. Restoration and management of existing forests are included because of the extensive areas of degraded natural forests in need of rehabilitation.

  1. REMOVAL OF SELECTED POLLUTANTS FROM AQUEOUS MEDIA BY HARDWOOD MULCH

    EPA Science Inventory

    Generic hardwood mulch, usually used for landscaping, was utilized to remove several selected pollutants (heavy metals and toxic organic compounds) typically found in urban stormwater (SW) runoff. The hardwood mulch sorbed all the selected pollutants from a spiked stormwater mix...

  2. Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

    SciTech Connect

    van der Lelie, D.; Taghavi, S.; McCorkle, S. M.; Li, L. L.; Malfatti, S. A.; Monteleone, D.; Donohoe, B. S.; Ding, S. Y.; Adney, W. S.; Himmel, M. E.; Tringe, S. G.

    2012-05-01

    This study describes the composition and metabolic potential of a lignocellulosic biomass degrading community that decays poplar wood chips under anaerobic conditions. We examined the community that developed on poplar biomass in a non-aerated bioreactor over the course of a year, with no microbial inoculation other than the naturally occurring organisms on the woody material. The composition of this community contrasts in important ways with biomass-degrading communities associated with higher organisms, which have evolved over millions of years into a symbiotic relationship. Both mammalian and insect hosts provide partial size reduction, chemical treatments (low or high pH environments), and complex enzymatic 'secretomes' that improve microbial access to cell wall polymers. We hypothesized that in order to efficiently degrade coarse untreated biomass, a spontaneously assembled free-living community must both employ alternative strategies, such as enzymatic lignin depolymerization, for accessing hemicellulose and cellulose and have a much broader metabolic potential than host-associated communities. This would suggest that such a community would make a valuable resource for finding new catalytic functions involved in biomass decomposition and gaining new insight into the poorly understood process of anaerobic lignin depolymerization. Therefore, in addition to determining the major players in this community, our work specifically aimed at identifying functions potentially involved in the depolymerization of cellulose, hemicelluloses, and lignin, and to assign specific roles to the prevalent community members in the collaborative process of biomass decomposition. A bacterium similar to Magnetospirillum was identified among the dominant community members, which could play a key role in the anaerobic breakdown of aromatic compounds. We suggest that these compounds are released from the lignin fraction in poplar hardwood during the decay process, which would point to

  3. Hardwood tree survival in heavy ground cover on reclaimed land in West Virginia: mowing and ripping effects.

    PubMed

    Skousen, Jeff; Gorman, Jim; Pena-Yewtukhiw, Eugenia; King, Jim; Stewart, Jason; Emerson, Paul; Delong, Curtis

    2009-01-01

    Current West Virginia coal mining regulations emphasize reforestation as a preferred postmining land use on surface mined areas. Some mined sites reclaimed to pasture are being converted to forests. In the spring of 2001, we compared the establishment and growth of five hardwood tree species on a reclaimed West Virginaia surface mine with compacted soils and a heavy grass groundcover. We planted 1-yr-old seedlings of five species (black cherry [Prunus serotina Ehrh.], red oak [Quercus rubra L.], yellow poplar [Liriodendron tulipifera L.], black walnut [Juglans nigra L.], and white ash [Fraxinus americana L.]) into sites that were mowed and unmowed on north- and south-facing aspects. We applied a ripping treatment, which loosened the compacted soils and disturbed the heavy ground cover. First year results showed >80% survival for all species. After 7 yr black cherry survival averaged 36%, red oak 47%, yellow poplar 66%, black walnut 80%, and white ash 98% across all sites and treatments. Seedling survival was best on north, unmowed, and ripped areas. Average growth (height x diameter(2)) of trees after 7 yr was greatest with white ash (434 cm(3)), followed by yellow poplar (256 cm(3)) and black walnut (138 cm(3)), then by black cherry (31 cm(3)) and red oak (27 cm(3)). Browsing by wildlife had a negative impact on tree growth especially on south aspect sites. Overall, mowing reduced survival of black cherry, red oak, and yellow poplar, but not for black walnut and white ash. Ripping increased survival of black cherry, red oak, and yellow poplar. Growth of all species was improved with ripping. Using inverse linear-quadratic plateau models, the time required for tree survival to stabilize varied from 1 yr for white ash to 6 to 9 yr for the other species. PMID:19465715

  4. Comparison of several artificial neural network classifiers for CT images of hardwood logs

    NASA Astrophysics Data System (ADS)

    Schmoldt, Daniel L.; He, Jing; Abbott, A. Lynn

    1998-02-01

    Knowledge of internal log defects, obtained by scanning, is critical to efficiency improvements for future hardwood sawmills. Nevertheless, before computed tomography (CT) scanning can be applied in industrial operations, we need to automatically interpret scan information so that it can provide the saw operator with the information necessary to make proper sawing decisions. Our current approach to automatically label features in CT images of hardwood logs classifies each pixel individually using a back-propagation artificial neural network (ANN) and feature vectors that include a small, local neighborhood of pixels and the distance of the target pixel to the center of the log. Initially, this ANN was able to classify clearwood, bark, decay, knots, and voids in CT images of two species of oak with 95% pixel-wise accuracy. Recently we have investigated other ANN classifiers, comparing 2D versus 3D neighborhoods and species-dependent (single species) versus species- independent (multiple species) classifiers using oak, yellow poplar, and cherry CT images. When considered individually, the resulting species-dependent classifiers yield similar levels of accuracy (96 - 98%). 3D neighborhoods work better for multiple-species classifiers and 2D is better for single-species. Under certain conditions there is no statistical difference in accuracy between single- and multiple-species classifiers, suggesting that a multiple- species classifier can be applied broadly with high accuracy.

  5. 77 FR 71017 - Hardwood Plywood From China

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-28

    ... notice in the Federal Register of October 3, 2012 (77 FR 60460). The conference was held in Washington... COMMISSION Hardwood Plywood From China Determinations On the basis of the record \\1\\ developed in the subject... plywood from China that are allegedly subsidized and sold in the United States at less than fair...

  6. Hydroponic screening of poplar for trace element tolerance and accumulation.

    PubMed

    Migeon, Aude; Richaud, Pierre; Guinet, Frédéric; Blaudez, Damien; Chalot, Michel

    2012-04-01

    Using the nutrient film technique, we screened 21 clones of poplar for growth in the presence of a mix of trace elements (TE) and for TE accumulation capacities. Poplar cuttings were exposed for four weeks to a multipollution solution consisting in 10 microM Cd, Cu, Ni, and Pb, and 200 microM Zn. Plant biomass and TE accumulation patterns in leaves varied greatly between clones. The highest Cd and Zn concentrations in leaves were detected in P. trichocarpa and P. trichocarpa hybrids, with the clone Skado (P. trichocarpa x P. maximowiczii) accumulating up to 108 mg Cd kg(-1) DW and 1510 mg Zn kg(-1) DW when exposed to a multipollution context. Our data also confirm the importance of pH and multipollution, as these factors greatly affect TE accumulation in above ground biomass. The NFT technique applied here to a large range of poplar clones also revealed the potential of the Rochester, AFO662 and AFO678 poplar clones for use in phytostabilization programs and bioenergy production, where production of less contaminated above ground biomass is suitable.

  7. Stomatal factors and vulnerability of stem xylem to cavitation in poplars.

    PubMed

    Arango-Velez, Adriana; Zwiazek, Janusz J; Thomas, Barb R; Tyree, Melvin T

    2011-10-01

    The relationships between the vulnerability of stem xylem to cavitation, stomatal conductance, stomatal density, and leaf and stem water potential were examined in six hybrid poplar (P38P38, Walker, Okanese, Northwest, Assiniboine and Berlin) and balsam poplar (Populus balsamifera) clones. Stem xylem cavitation resistance was examined with the Cavitron technique in well-watered plants grown in the greenhouse. To investigate stomatal responses to drought, plants were subjected to drought stress by withholding watering for 5 (mild drought) and 7 (severe drought) days and to stress recovery by rewatering severely stressed plants for 30 min and 2 days. The clones varied in stomatal sensitivity to drought and vulnerability to stem xylem cavitation. P38P38 reduced stomatal conductance in response to mild stress while the balsam poplar clone maintained high leaf stomatal conductance under more severe drought stress conditions. Differences between the severely stressed clones were also observed in leaf water potentials with no or relatively small decreases in Assiniboine, P38P38, Okanese and Walker. Vulnerability to drought-induced stem xylem embolism revealed that balsam poplar and Northwest clones reached loss of conductivity at lower stem water potentials compared with the remaining clones. There was a strong link between stem xylem resistance to cavitation and stomatal responsiveness to drought stress in balsam poplar and P38P38. However, the differences in stomatal responsiveness to mild drought suggest that other drought-resistant strategies may also play a key role in some clones of poplars exposed to drought stress.

  8. Properties of recycled polypropylene based composites incorporating treated hardwood sawdust

    NASA Astrophysics Data System (ADS)

    Shulga, Galia; Jaunslavietis, Jevgenijs; Ozolins, Jurijs; Neiberte, Brigita; Verovkins, Anrijs; Vitolina, Sanita; Shakels, Vadims

    2016-05-01

    The effect of different treatment of hardwood sawdust under mild conditions on contact angles, adhesion energy and water sorption was studied. A comparison of these indices for the hardwood treated sawdust and the composites filled with them was performed. The treatment promoted the compatibility between the recycled polypropylene and the hardwood filler. The inclusion of the lignin-based compatibiliser in the composite, containing the ammoxidised wood filler, essentially improved its mechanical properties.

  9. Vulnerability to drought-induced cavitation in poplars: synthesis and future opportunities.

    PubMed

    Fichot, Régis; Brignolas, Franck; Cochard, Hervé; Ceulemans, Reinhart

    2015-07-01

    Vulnerability to drought-induced cavitation is a key trait of plant water relations. Here, we summarize the available literature on vulnerability to drought-induced cavitation in poplars (Populus spp.), a genus of agronomic, ecological and scientific importance. Vulnerability curves and vulnerability parameters (including the water potential inducing 50% loss in hydraulic conductivity, P50) were collected from 37 studies published between 1991 and 2014, covering a range of 10 species and 12 interspecific hybrid crosses. Results of our meta-analysis confirm that poplars are among the most vulnerable woody species to drought-induced cavitation (mean P50  = -1.44 and -1.55 MPa across pure species and hybrids, respectively). Yet, significant variation occurs among species (P50 range: 1.43 MPa) and among hybrid crosses (P50 range: 1.12 MPa), within species and hybrid crosses (max. P50 range reported: 0.8 MPa) as well as in response to environmental factors including nitrogen fertilization, irradiance, temperature and drought (max. P50 range reported: 0.75 MPa). Potential implications and gaps in knowledge are discussed in the context of poplar cultivation, species adaptation and climate modifications. We suggest that poplars represent a valuable model for studies on drought-induced cavitation, especially to elucidate the genetic and molecular basis of cavitation resistance in Angiosperms.

  10. Vulnerability to drought-induced cavitation in poplars: synthesis and future opportunities.

    PubMed

    Fichot, Régis; Brignolas, Franck; Cochard, Hervé; Ceulemans, Reinhart

    2015-07-01

    Vulnerability to drought-induced cavitation is a key trait of plant water relations. Here, we summarize the available literature on vulnerability to drought-induced cavitation in poplars (Populus spp.), a genus of agronomic, ecological and scientific importance. Vulnerability curves and vulnerability parameters (including the water potential inducing 50% loss in hydraulic conductivity, P50) were collected from 37 studies published between 1991 and 2014, covering a range of 10 species and 12 interspecific hybrid crosses. Results of our meta-analysis confirm that poplars are among the most vulnerable woody species to drought-induced cavitation (mean P50  = -1.44 and -1.55 MPa across pure species and hybrids, respectively). Yet, significant variation occurs among species (P50 range: 1.43 MPa) and among hybrid crosses (P50 range: 1.12 MPa), within species and hybrid crosses (max. P50 range reported: 0.8 MPa) as well as in response to environmental factors including nitrogen fertilization, irradiance, temperature and drought (max. P50 range reported: 0.75 MPa). Potential implications and gaps in knowledge are discussed in the context of poplar cultivation, species adaptation and climate modifications. We suggest that poplars represent a valuable model for studies on drought-induced cavitation, especially to elucidate the genetic and molecular basis of cavitation resistance in Angiosperms. PMID:25444560

  11. 78 FR 68297 - Hardwood Lumber and Hardwood Plywood Promotion, Research and Information Order

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-13

    ... deciduous, broad-leafed tree which could include: aspen, birch, cypress, popular, maple, cherry, walnut and... U.S. Timber Production \\3\\ \\3\\ USDA Forest Service, Dr. William Luppold, Princeton, WV. According to the USDA Forest Service the volume of hardwood lumber produced in 2010 was 7,581 MMBF (million...

  12. Poplar for the phytomanagement of boron contaminated sites.

    PubMed

    Robinson, B H; Green, S R; Chancerel, B; Mills, T M; Clothier, B E

    2007-11-01

    Boron (B) is a widespread environmental contaminant that is mobile relative to other trace elements. We investigated the potential of hybrid poplar (Populus sp.) for B phytomanagement using a lysimeter experiment and a field trial on B-contaminated wood-waste. In both studies, poplars enhanced evapotranspiration from the wood-waste, reduced B leaching, and accumulated B in the aerial portions of the tree. When grown in a substrate containing 30 mg/kg B, poplar leaves had an average B concentration of 845 mg/kg, while the stems contained 21 mg/kg B. Leaf B concentrations increased linearly with leaf age. A decomposition experiment revealed that abscised leaves released 14% of their B during the winter months. Fertiliser application enhanced tree growth without decreasing the leaf B concentrations. Harvesting alternate rows of trees on a contaminated site would reduce leaching from the site while removing B. Harvested plant material may provide bioenergy, stock fodder, or an amendment for B-deficient soils. PMID:17382438

  13. An efficient Agrobacterium-mediated transformation system for poplar.

    PubMed

    Movahedi, Ali; Zhang, Jiaxin; Amirian, Rasoul; Zhuge, Qiang

    2014-06-13

    Poplar is a model system for the regeneration and genetic transformation of woody plants. To shorten the time required for studies of transgenic poplar, efforts have been made to optimize transformation methods that use Agrobacterium tumefaciens. In this study, an Agrobacterium infective suspension was treated at 4 °C for at least 10 h before infecting explants. By transforming the Populus hybrid clone "Nanlin895" (Populus deltoides×P. euramericana) with Agrobacterium harboring the PBI121:CarNAC6 binary vector, we showed that the transformation efficiency was improved significantly by multiple independent factors, including an Agrobacterium infective suspension with an OD600 of 0.7, an Agrobacterium infection for 120 min, an Agrobacterium infective suspension at a pH of 5.0, an acetosyringone concentration of 200 µM, a cocultivation at 28 °C, a cocultivation for 72 h and a sucrose concentration of 30 g/L in the cocultivation medium. We also showed that preculture of wounded leaf explants for two days increased the regeneration rate. The integration of the desired gene into transgenic poplars was detected using selective medium containing kanamycin, followed by southern blot analysis. The expression of the transgene in the transgenic lines was confirmed by northern blot analysis.

  14. Response of transgenic poplar overexpressing cytosolic glutamine synthetase to phosphinothricin.

    PubMed

    Pascual, María Belén; Jing, Zhong Ping; Kirby, Edward G; Cánovas, Francisco M; Gallardo, Fernando

    2008-01-01

    Glutamine synthetase (GS) is the main enzyme involved in ammonia assimilation in plants and is the target of phosphinothricin (PPT), an herbicide commonly used for weed control in agriculture. As a result of the inhibition of GS, PPT also blocks photorespiration, resulting in the depletion of leaf amino acid pools leading to the plant death. Hybrid transgenic poplar (Populus tremula x P. alba INRA clone 7171-B4) overexpressing cytosolic GS is characterized by enhanced vegetative growth [Gallardo, F., Fu, J., Cantón, F.R., García-Gutiérrez, A., Cánovas, F.M., Kirby, E.G., 1999. Expression of a conifer glutamine synthetase gene in transgenic poplar. Planta 210, 19-26; Fu, J., Sampalo, R., Gallardo, F., Cánovas, F.M., Kirby, E.G., 2003. Assembly of a cytosolic pine glutamine synthetase holoenzyme in leaves of transgenic poplar leads to enhanced vegetative growth in young plants. Plant Cell Environ. 26, 411-418; Jing, Z.P., Gallardo, F., Pascual, M.B., Sampalo, R., Romero, J., Torres de Navarra, A., Cánovas, F.M., 2004. Improved growth in a field trial of transgenic hybrid poplar overexpressing glutamine synthetase. New Phytol. 164, 137-145], increased photosynthetic and photorespiratory capacities [El-Khatib, R.T., Hamerlynck, E.P., Gallardo, F., Kirby, E.G., 2004. Transgenic poplar characterized by ectopic expression of a pine cytosolic glutamine synthetase gene exhibits enhanced tolerance to water stress. Tree Physiol. 24, 729-736], enhanced tolerance to water stress (El-Khatib et al., 2004), and enhanced nitrogen use efficiency [Man, H.-M., Boriel, R., El-Khatib, R.T., Kirby, E.G., 2005. Characterization of transgenic poplar with ectopic expression of pine cytosolic glutamine synthetase under conditions of varying nitrogen availability. New Phytol. 167, 31-39]. In vitro plantlets of GS transgenic poplar exhibited enhanced resistance to PPT when compared with non-transgenic controls. After 30 days exposure to PPT at an equivalent dose of 275 g ha(-1), growth

  15. 78 FR 76857 - Hardwood Plywood From China; Determinations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-19

    ... notice in the Federal Register on June 19, 2013 (78 FR 36791). The hearing was held in Washington, DC, on... COMMISSION Hardwood Plywood From China; Determinations On the basis of the record \\1\\ developed in the... of imports of hardwood plywood from China provided for in subheading(s) 4412.10; 4412.31;...

  16. Synergy of agroforestry and bottomland hardwood afforestation

    USGS Publications Warehouse

    Twedt, D.J.; Portwood, J.; Clason, Terry R.

    2003-01-01

    Afforestation of bottomland hardwood forests has historically emphasized planting heavy-seeded tree species such as oak (Quercus spp.) and pecan (Caryaillinoensis) with little or no silvicultural management during stand development. Slow growth of these tree species, herbivory, competing vegetation, and limited seed dispersal, often result in restored sites that are slow to develop vertical vegetation structure and have limited tree diversity. Where soils and hydrology permit, agroforestry can provide transitional management that mitigates these historical limitations on converting cropland to forests. Planting short-rotation woody crops and intercropping using wide alleyways are two agroforestry practices that are well suited for transitional management. Weed control associated with agroforestry systems benefits planted trees by reducing competition. The resultant decrease in herbaceous cover suppresses small mammal populations and associated herbivory of trees and seeds. As a result, rapid vertical growth is possible that can 'train' under-planted, slower-growing, species and provide favorable environmental conditions for naturally invading trees. Finally, annual cropping of alleyways or rotational pulpwood harvest of woody crops provides income more rapidly than reliance on future revenue from traditional silviculture. Because of increased forest diversity, enhanced growth and development, and improved economic returns, we believe that using agroforestry as a transitional management strategy during afforestation provides greater benefits to landowners and to the environment than does traditional bottomland hardwood afforestation.

  17. Analysis of 4,664 high-quality sequence-finished poplar full-length

    SciTech Connect

    Ralph, S.; Gunter, Lee E; Tuskan, Gerald A; Douglas, Carl; Holt, Robert A.; Jones, Steven; Marra, Marco; Bohlmann, J.

    2008-01-01

    The genus Populus includes poplars, aspens and cottonwoods, which will be collectively referred to as poplars hereafter unless otherwise specified. Poplars are the dominant tree species in many forest ecosystems in the Northern Hemisphere and are of substantial economic value in plantation forestry. Poplar has been established as a model system for genomics studies of growth, development, and adaptation of woody perennial plants including secondary xylem formation, dormancy, adaptation to local environments, and biotic interactions. As part of the poplar genome sequencing project and the development of genomic resources for poplar, we have generated a full-length (FL)-cDNA collection using the biotinylated CAP trapper method. We constructed four FLcDNA libraries using RNA from xylem, phloem and cambium, and green shoot tips and leaves from the P. trichocarpa Nisqually-1 genotype, as well as insect-attacked leaves of the P. trichocarpa x P. deltoides hybrid. Following careful selection of candidate cDNA clones, we used a combined strategy of paired end reads and primer walking to generate a set of 4,664 high-accuracy, sequence-verified FLcDNAs, which clustered into 3,990 putative unique genes. Mapping FLcDNAs to the poplar genome sequence combined with BLAST comparisons to previously predicted protein coding sequences in the poplar genome identified 39 FLcDNAs that likely localize to gaps in the current genome sequence assembly. Another 173 FLcDNAs mapped to the genome sequence but were not included among the previously predicted genes in the poplar genome. Comparative sequence analysis against Arabidopsis thaliana and other species in the non-redundant database of GenBank revealed that 11.5% of the poplar FLcDNAs display no significant sequence similarity to other plant proteins. By mapping the poplar FLcDNAs against transcriptome data previously obtained with a 15.5 K cDNA microarray, we identified 153 FLcDNA clones for genes that were differentially expressed in

  18. The poplar basic helix-loop-helix transcription factor BEE3 – Like gene affects biomass production by enhancing proliferation of xylem cells in poplar

    SciTech Connect

    Noh, Seol Ah Choi, Young-Im Cho, Jin-Seong Lee, Hyoshin

    2015-06-19

    Brassinosteroids (BRs) play important roles in many aspects of plant growth and development, including regulation of vascular cambium activities and cell elongation. BR-induced BEE3 (brassinosteroid enhanced expression 3) is required for a proper BR response. Here, we identified a poplar (Populus alba × Populus glandulosa) BEE3-like gene, PagBEE3L, encoding a putative basic helix-loop-helix (bHLH)-type transcription factor. Expression of PagBEE3L was induced by brassinolide (BL). Transcripts of PagBEE3L were mainly detected in stems, with the internode having a low level of transcription and the node having a relatively higher level. The function of the PagBEE3L gene was investigated through phenotypic analyses with PagBEE3L-overexpressing (ox) transgenic lines. This work particularly focused on a potential role of PagBEE3L in stem growth and development of polar. The PagBEE3L-ox poplar showed thicker and longer stems than wild-type plants. The xylem cells from the stems of PagBEE3L-ox plants revealed remarkably enhanced proliferation, resulting in an earlier thickening growth than wild-type plants. Therefore, this work suggests that xylem development of poplar is accelerated in PagBEE3L-ox plants and PagBEE3L plays a role in stem growth by increasing the proliferation of xylem cells to promote the initial thickening growth of poplar stems. - Highlights: • We identify the BEE3-like gene form hybrid poplar (Populus alba × Populus glandulosa). • We examine effects of overexpression of PagBEE3L on growth in poplar. • We found that 35S:BEE3L transgenic plants showed more rapid growth than wild-type plants. • BEE3L protein plays an important role in the development of plant stem.

  19. In situ measurements of root exudation in three hardwood species in southern Indiana

    NASA Astrophysics Data System (ADS)

    O'Connor, D. A.; Brzostek, E. R.; Fisher, J. B.; Phillips, R.

    2012-12-01

    Root exudation - the release of soluble organic compounds to soil - has long been considered a black box in ecology owing to methodological difficulties associated with measuring this flux in situ. This knowledge gap is significant given recent findings that suggest exudate inputs are appreciable in magnitude (2-5% of net primary production) and are coupled to microbial activities, nutrient release and soil organic matter decomposition. We developed a novel experimental system for collecting exudates from intact roots of field-grown trees using cuvettes filled with sterile glass beads. We measured root exudation for three tree species in ~80 year old mixed hardwood forest in south central Indiana, USA in the summer of 2012. Exudation rates varied from 0 to 1413 ug C/g root/day, and differed by sampling date and among trees species. Overall, rates were greater in early relative to late July, and greater in sugar maple (Acer saccharum) and white oak (Quercus alba) relative to tulip poplar (Liriodendron tulipifera). Across all species, exudation rates were correlated with root mass, indicating that greater allocation to roots likely increases the amount of C available to fuel soil microbial activity. Collectively, the results of this study should enable us to develop improved model parameterizations of the C costs associated with nutrient acquisition, an important feedback for predicting the role of vegetation in mediating climate change.

  20. Chloroplast parameters differ in wild type and transgenic poplars overexpressing gsh1 in the cytosol.

    PubMed

    Ivanova, L A; Ronzhina, D A; Ivanov, L A; Stroukova, L V; Peuke, A D; Rennenberg, H

    2009-07-01

    Poplar mutants overexpressing the bacterial genes gsh1 or gsh2 encoding the enzymes of glutathione biosynthesis are among the best-characterised transgenic plants. However, this characterisation originates exclusively from laboratory studies, and the performance of these mutants under field conditions is largely unknown. Here, we report a field experiment in which the wild-type poplar hybrid Populus tremula x P. alba and a transgenic line overexpressing the bacterial gene gsh1 encoding gamma-glutamylcysteine synthetase in the cytosol were grown for 3 years at a relatively clean (control) field site and a field site contaminated with heavy metals. Aboveground biomass accumulation was slightly smaller in transgenic compared to wild-type plants; soil contamination significantly decreased biomass accumulation in both wild-type and transgenic plants by more than 40%. Chloroplasts parameters, i.e., maximal diameter, projection area and perimeter, surface area and volume, surface/volume ratio and a two-dimensional form coefficient, were found to depend on plant type, leaf tissue and soil contamination. The greatest differences between wild and transgenic poplars were observed at the control site. Under these conditions, chloroplast sizes in palisade tissue of transgenic poplar significantly exceeded those of the wild type. In contrast to the wild type, palisade chloroplast volume exceeded that of spongy chloroplasts in transgenic poplars at both field sites. Chlorophyll content per chloroplast was the same in wild and transgenic poplars. Apparently, the increase in chloroplast volume was not connected to changes in the photosynthetic centres. Chloroplasts of transgenic poplar at the control site were more elongated in palisade cells and close to spherical in spongy mesophyll chloroplasts. At the contaminated site, palisade and spongy cell chloroplasts of leaves from transgenic trees and the wild type were the same shape. Transgenic poplars also had a smaller chloroplast

  1. AmeriFlux US-Wi1 Intermediate hardwood (IHW)

    SciTech Connect

    Chen, Jiquan

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Wi1 Intermediate hardwood (IHW). Site Description - The Wisconsin Intermediate Hardwoods site is located in the Washburn Ranger District of the Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. The intermediate hardwoods site is one of ten sites that collectively represent the successional stages of development in the predominant stand types of a physically homogeneous landscape. In 2001, northern hardwood stands of all ages occupied 45% of the region.

  2. Stomatal characteristics of riparian poplar species in a semi-arid environment.

    PubMed

    Pearce, David W; Millard, Sandra; Bray, Douglas F; Rood, Stewart B

    2006-02-01

    Several native poplar species meet at the margins of their natural distributions in southern Alberta, Canada. In this semi-arid area, poplars are obligate riparian species but they occupy several intergrading ecoregions. Populus deltoides Bartr. ex Marsh predominates in the warmest and driest eastern prairie ecoregions; P. balsamifera L. occupies the cooler and wetter western parkland and montane ecoregions; and P. angustifolia James and hybrids between the species occur in the intermediate grassland ecoregions. We investigated stomatal characteristics of these poplars in 51 genotypes collected across the range of ecoregions and grown in a semi-arid common garden. Stomatal length differed among genotypes within species but did not differ among species, ranging from 19 to 22 microm. Total stomatal densities (adaxial plus abaxial) differed among genotypes within species but were similar among species (290-420 stomata mm(-2)). Single-surface stomatal densities differed among species and consequently, the ratio of adaxial:abaxial stomatal density also differed, ranging from 0.94 for P. deltoides to 0.27 for P. balsamifera, with intermediate stomatal density ratios in P. angustifolia and hybrids. In a subsequent study of a subset of the same genotypes, stomatal density was correlated with stomatal conductance (r2 = 0.75) and the conductance ratios differed among species in the same manner as the stomatal density ratios. We conclude that: (1) diverse poplar genotypes respond similarly to a semi-arid environment by producing comparatively small and dense stomata; (2) differences in stomatal density underlie differences in stomatal conductance and differences among species in stomatal density ratio or conductance ratio may reflect adaptation to climatic differences among ecoregions; and (3) there is substantial variation in stomatal characteristics within and among species and hybrids in this area that could be useful for the selection and breeding of poplars adapted to

  3. Finding Fingerprints of Selection in Poplar Genomes

    ScienceCinema

    Tuskan, Gerald

    2016-07-12

    Jerry Tuskan of Oak Ridge National Laboratory and the DOE JGI talks about poplar trees as models for selective adaptation to an environment. This video complements a study published ahead online August 24, 2014 in Nature Genetics.

  4. Finding Fingerprints of Selection in Poplar Genomes

    SciTech Connect

    Tuskan, Gerald

    2014-10-02

    Jerry Tuskan of Oak Ridge National Laboratory and the DOE JGI talks about poplar trees as models for selective adaptation to an environment. This video complements a study published ahead online August 24, 2014 in Nature Genetics.

  5. Continuous steam hydrolysis of tulip poplar

    SciTech Connect

    Fieber, C.A.; Roberts, R.S.; Faass, G.S.; Muzzy, J.D.; Colcord, A.R.; Bery, M.K.

    1982-01-01

    The continuous hydrolysis of poplar chips by steam at 300-350 psi resulted in the separation of hemicellulose (I) cellulose and lignin components. The I fraction was readily depolymerised by steam to acetic acid, furfural, methanol, and xylose.

  6. Species characterization and responses of subcortical insects to trap-logs and ethanol in a hardwood biomass plantation: Subcortical insects in hardwood plantations

    SciTech Connect

    Coyle, David R.; Brissey, Courtney L.; Gandhi, Kamal J. K.

    2015-01-02

    1. We characterized subcortical insect assemblages in economically important eastern cottonwood (Populus deltoides Bartr.), sycamore (Platanus occidentalis L.) and sweetgum (Liquidambar styraciflua L.) plantations in the southeastern U.S.A. Furthermore, we compared insect responses between freshly-cut plant material by placing traps directly over cut hardwood logs (trap-logs), traps baited with ethanol lures and unbaited (control) traps. 2. We captured a total of 15 506 insects representing 127 species in four families in 2011 and 2013. Approximately 9% and 62% of total species and individuals, respectively, and 23% and 79% of total Scolytinae species and individuals, respectively, were non-native to North America. 3. We captured more Scolytinae using cottonwood trap-logs compared with control traps in both years, although this was the case with sycamore and sweetgum only in 2013. More woodborers were captured using cottonwood and sweetgum trap-logs compared with control traps in both years, although only with sycamore in 2013. 4. Ethanol was an effective lure for capturing non-native Scolytinae; however, not all non-native species were captured using ethanol lures. Ambrosiophilus atratus (Eichhoff) and Hypothenemus crudiae (Panzer) were captured with both trap-logs and control traps, whereas Coccotrypes distinctus (Motschulsky) and Xyleborus glabratus Eichhoff were only captured on trap-logs. 5. Indicator species analysis revealed that certain scolytines [e.g. Cnestus mutilates (Blandford) and Xylosandrus crassiusculus (Motschulsky)] showed significant associations with trap-logs or ethanol baits in poplar or sweetgum trap-logs. In general, the species composition of subcortical insects, especially woodboring insects, was distinct among the three tree species and between those associated with trap-logs and control traps.

  7. The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

    PubMed Central

    van der Lelie, Daniel; Taghavi, Safiyh; McCorkle, Sean M.; Li, Luen-Luen; Malfatti, Stephanie A.; Monteleone, Denise; Donohoe, Bryon S.; Ding, Shi-You; Adney, William S.; Himmel, Michael E.; Tringe, Susannah G.

    2012-01-01

    This study describes the composition and metabolic potential of a lignocellulosic biomass degrading community that decays poplar wood chips under anaerobic conditions. We examined the community that developed on poplar biomass in a non-aerated bioreactor over the course of a year, with no microbial inoculation other than the naturally occurring organisms on the woody material. The composition of this community contrasts in important ways with biomass-degrading communities associated with higher organisms, which have evolved over millions of years into a symbiotic relationship. Both mammalian and insect hosts provide partial size reduction, chemical treatments (low or high pH environments), and complex enzymatic ‘secretomes’ that improve microbial access to cell wall polymers. We hypothesized that in order to efficiently degrade coarse untreated biomass, a spontaneously assembled free-living community must both employ alternative strategies, such as enzymatic lignin depolymerization, for accessing hemicellulose and cellulose and have a much broader metabolic potential than host-associated communities. This would suggest that such a community would make a valuable resource for finding new catalytic functions involved in biomass decomposition and gaining new insight into the poorly understood process of anaerobic lignin depolymerization. Therefore, in addition to determining the major players in this community, our work specifically aimed at identifying functions potentially involved in the depolymerization of cellulose, hemicelluloses, and lignin, and to assign specific roles to the prevalent community members in the collaborative process of biomass decomposition. A bacterium similar to Magnetospirillum was identified among the dominant community members, which could play a key role in the anaerobic breakdown of aromatic compounds. We suggest that these compounds are released from the lignin fraction in poplar hardwood during the decay process, which would point

  8. The metagenome of an anaerobic microbial community decomposing poplar wood chips

    SciTech Connect

    van der Lelie D.; Taghavi, S.; McCorkle, S. M.; Li, L.-L.; Malfatti, S. A.; Monteleone, D.; Donohoe, B. S.; Ding, S.-Y.; Adney, W. S.; Himmel, M. E.; Tringe, S. G.

    2012-05-01

    This study describes the composition and metabolic potential of a lignocellulosic biomass degrading community that decays poplar wood chips under anaerobic conditions. We examined the community that developed on poplar biomass in a non-aerated bioreactor over the course of a year, with no microbial inoculation other than the naturally occurring organisms on the woody material. The composition of this community contrasts in important ways with biomass-degrading communities associated with higher organisms, which have evolved over millions of years into a symbiotic relationship. Both mammalian and insect hosts provide partial size reduction, chemical treatments (low or high pH environments), and complex enzymatic 'secretomes' that improve microbial access to cell wall polymers. We hypothesized that in order to efficiently degrade coarse untreated biomass, a spontaneously assembled free-living community must both employ alternative strategies, such as enzymatic lignin depolymerization, for accessing hemicellulose and cellulose and have a much broader metabolic potential than host-associated communities. This would suggest that such a community would make a valuable resource for finding new catalytic functions involved in biomass decomposition and gaining new insight into the poorly understood process of anaerobic lignin depolymerization. Therefore, in addition to determining the major players in this community, our work specifically aimed at identifying functions potentially involved in the depolymerization of cellulose, hemicelluloses, and lignin, and to assign specific roles to the prevalent community members in the collaborative process of biomass decomposition. A bacterium similar to Magnetospirillum was identified among the dominant community members, which could play a key role in the anaerobic breakdown of aromatic compounds. We suggest that these compounds are released from the lignin fraction in poplar hardwood during the decay process, which would point to

  9. PoplarGene: poplar gene network and resource for mining functional information for genes from woody plants.

    PubMed

    Liu, Qi; Ding, Changjun; Chu, Yanguang; Chen, Jiafei; Zhang, Weixi; Zhang, Bingyu; Huang, Qinjun; Su, Xiaohua

    2016-01-01

    Poplar is not only an important resource for the production of paper, timber and other wood-based products, but it has also emerged as an ideal model system for studying woody plants. To better understand the biological processes underlying various traits in poplar, e.g., wood development, a comprehensive functional gene interaction network is highly needed. Here, we constructed a genome-wide functional gene network for poplar (covering ~70% of the 41,335 poplar genes) and created the network web service PoplarGene, offering comprehensive functional interactions and extensive poplar gene functional annotations. PoplarGene incorporates two network-based gene prioritization algorithms, neighborhood-based prioritization and context-based prioritization, which can be used to perform gene prioritization in a complementary manner. Furthermore, the co-functional information in PoplarGene can be applied to other woody plant proteomes with high efficiency via orthology transfer. In addition to poplar gene sequences, the webserver also accepts Arabidopsis reference gene as input to guide the search for novel candidate functional genes in PoplarGene. We believe that PoplarGene (http://bioinformatics.caf.ac.cn/PoplarGene and http://124.127.201.25/PoplarGene) will greatly benefit the research community, facilitating studies of poplar and other woody plants. PMID:27515999

  10. PoplarGene: poplar gene network and resource for mining functional information for genes from woody plants

    PubMed Central

    Liu, Qi; Ding, Changjun; Chu, Yanguang; Chen, Jiafei; Zhang, Weixi; Zhang, Bingyu; Huang, Qinjun; Su, Xiaohua

    2016-01-01

    Poplar is not only an important resource for the production of paper, timber and other wood-based products, but it has also emerged as an ideal model system for studying woody plants. To better understand the biological processes underlying various traits in poplar, e.g., wood development, a comprehensive functional gene interaction network is highly needed. Here, we constructed a genome-wide functional gene network for poplar (covering ~70% of the 41,335 poplar genes) and created the network web service PoplarGene, offering comprehensive functional interactions and extensive poplar gene functional annotations. PoplarGene incorporates two network-based gene prioritization algorithms, neighborhood-based prioritization and context-based prioritization, which can be used to perform gene prioritization in a complementary manner. Furthermore, the co-functional information in PoplarGene can be applied to other woody plant proteomes with high efficiency via orthology transfer. In addition to poplar gene sequences, the webserver also accepts Arabidopsis reference gene as input to guide the search for novel candidate functional genes in PoplarGene. We believe that PoplarGene (http://bioinformatics.caf.ac.cn/PoplarGene and http://124.127.201.25/PoplarGene) will greatly benefit the research community, facilitating studies of poplar and other woody plants. PMID:27515999

  11. Nucleotide diversity among natural populations of a North American poplar (Populus balsamifera, Salicaceae).

    PubMed

    Breen, Amy L; Glenn, Elise; Yeager, Adam; Olson, Matthew S

    2009-01-01

    Poplars (Populus spp.) comprise an important component of circumpolar boreal forest ecosystems and are the model species for tree genomics. In this study, we surveyed genetic variation and population differentiation in three nuclear genes among populations of balsam poplar (Populus balsamifera) in North America. We examined nucleotide sequence variation in alcohol dehydrogenase 1 (Adh1) and glyceraldehyde 3-phosphate dehydrogenase (G3pdh), two well-studied nuclear loci in plants, and abscisic acid insensitivity 1B (ABI1B), a locus coincident with timing of seasonal dormancy in quantitative trait locus (QTL) studies of hybrid poplars. We compared estimates of baseline population genetic parameters for these loci with those obtained in studies of other poplar species, particularly European aspen (Populus tremula). Average pairwise nucleotide diversity (pi(tot) = 0.00216-0.00353) was equivalent to that in Populus trichocarpa, but markedly less than that in P. tremula. Elevated levels of population structure were observed in ABI1B between the northern and southern regions (F(CT) = 0.184, P < 0.001) and among populations (F(ST) = 0.256, P < 0.001). These results suggest that geographic or taxonomic factors are important for understanding patterns of variation throughout the genus Populus. Our findings have the potential to aid in the design of sampling regimes for conservation and breeding stock and contribute to historical inferences regarding the factors that shaped the genetic diversity of boreal plant species.

  12. AmeriFlux US-Wi3 Mature hardwood (MHW)

    SciTech Connect

    Chen, Jiquan

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Wi3 Mature hardwood (MHW). Site Description - The Wisconsin Mature Hardwood site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. As an assemblage, the ten Wisconsin sites are indicative of the successional stages of development in the predominant stand types of a physically homogeneous landscape. The mature hardwood stand represents a typical naturally regenerated second-growth forest, free of anthropogenic disturbances for at least 70 years.

  13. Bottomland Hardwood Forests along the Upper Mississippi River

    USGS Publications Warehouse

    Yin, Y.; Nelson, J.C.; Lubinski, S.J.

    1997-01-01

    Bottomland hardwood forests along the United States' Upper Mississippi River have been drastically reduced in acreage and repeatedly logged during the nineteenth and twentieth centuries. Conversion to agricultural land, timber harvesting, and river modifications for flood prevention and for navigation were the primary factors that caused the changes. Navigation structures and flood-prevention levees have altered the fluvial geomorphic dynamics of the river and floodplain system. Restoration and maintenance of the diversity, productivity, and natural regeneration dynamics of the bottomland hardwood forests under the modified river environment represent a major management challenge.

  14. Greater efficiency of water use in poplar clones having a delayed response of mesophyll conductance to drought.

    PubMed

    Théroux Rancourt, Guillaume; Éthier, Gilbert; Pepin, Steeve

    2015-02-01

    Improvement of water use efficiency is a key objective to improve the sustainability of cultivated plants, especially fast growing species with high water consumption like poplar. It is well known that water use efficiency (WUE) varies considerably among poplar genotypes, and it was recently suggested that the use of the mesophyll-to-stomatal conductance ratio (gm/gs) would be an appropriate trait to improve WUE. The responses of 7-week-old cuttings of four hybrid poplar clones and one native Balsam poplar (Populus balsamifera L.) to a water stress-recovery cycle were examined to evaluate the relation between the gm/gs ratio and transpiration efficiency (TE), a leaf-level component of WUE. A contrasting gs response to water stress was observed among the five clones, from stomatal closure early on during soil drying up to limited closure in Balsam poplar. However in the hybrids, the decline in gm was consistently delayed by a few days compared with gs. Moreover, in the most water use-efficient hybrids, the recovery following rehydration occurred faster for gm than for gs. Thus, the delay in the response of gm to drought and its faster recovery upon rewatering increased the gm/gs of the hybrids and this ratio scaled positively with TE. Our results support the use of the gm/gs ratio to select genotypes with improved WUE, and the notion that breeding strategies focusing mainly on stomatal responses to soil drying should also look for a strong curvilinearity between net carbon assimilation rate and gs, the indication of a significant increase in gm/gs in the earlier stages of stomatal closure. PMID:25721370

  15. Greater efficiency of water use in poplar clones having a delayed response of mesophyll conductance to drought.

    PubMed

    Théroux Rancourt, Guillaume; Éthier, Gilbert; Pepin, Steeve

    2015-02-01

    Improvement of water use efficiency is a key objective to improve the sustainability of cultivated plants, especially fast growing species with high water consumption like poplar. It is well known that water use efficiency (WUE) varies considerably among poplar genotypes, and it was recently suggested that the use of the mesophyll-to-stomatal conductance ratio (gm/gs) would be an appropriate trait to improve WUE. The responses of 7-week-old cuttings of four hybrid poplar clones and one native Balsam poplar (Populus balsamifera L.) to a water stress-recovery cycle were examined to evaluate the relation between the gm/gs ratio and transpiration efficiency (TE), a leaf-level component of WUE. A contrasting gs response to water stress was observed among the five clones, from stomatal closure early on during soil drying up to limited closure in Balsam poplar. However in the hybrids, the decline in gm was consistently delayed by a few days compared with gs. Moreover, in the most water use-efficient hybrids, the recovery following rehydration occurred faster for gm than for gs. Thus, the delay in the response of gm to drought and its faster recovery upon rewatering increased the gm/gs of the hybrids and this ratio scaled positively with TE. Our results support the use of the gm/gs ratio to select genotypes with improved WUE, and the notion that breeding strategies focusing mainly on stomatal responses to soil drying should also look for a strong curvilinearity between net carbon assimilation rate and gs, the indication of a significant increase in gm/gs in the earlier stages of stomatal closure.

  16. Survival and growth of hardwoods in brown versus gray sandstone on a surface mine in West Virginia.

    PubMed

    Emerson, P; Skousen, J; Ziemkiewicz, P

    2009-01-01

    Surface mining in West Virginia removes the eastern deciduous forest and reclaiming the mined land to a productive forest must consider soil depth, soil physical and chemical properties, soil compaction, ground cover competition, and tree species selection. Our objective was to evaluate tree survival and growth in weathered brown sandstone and in unweathered gray sandstone. Brown and gray sandstone are often substituted when insufficient native topsoil is available for replacement. Three 2.8-ha plots were constructed with either 1.5 or 1.2 m of brown sandstone, or 1.5 m of gray sandstone at the surface. Half of each plot was compacted with a large dozer. Percent fines (<2 mm) in the upper 20 cm was 61% for brown sandstone and 34% in gray. Brown sandstone's pH was 5.1, while gray sandstone's pH was around 8.0. In March 2005, 2-yr-old seedlings of 11 hardwood species were planted. After 3 yr, tree survival was 86% on 1.5-m gray sandstone, 67% on 1.5-m brown sandstone, and 82% on 1.2-m brown sandstone. Survival was 78% on noncompacted and 79% on compacted areas. Average volume of all trees (height x diameter(2)) was significantly greater on brown sandstone (218 cm(3)) than gray sandstone (45 cm(3)) after 3 yr. Black locust (Robinia pseudoacacia L.) had the highest survival (100%) and significantly greater volume (792 cm(3)) than all other tree species. Survival of the other 10 species varied between 65% for tulip poplar (Liriodendron tulipifera L.) and 92% for redbud (Cercis canadensis L.), and volume varied between 36 cm(3) for white pine (Pinus strobes L.) and 175 cm(3) for tulip poplar. After 3 yr, brown sandstone appears to be a better topsoil material due to the much greater growth of trees, but tree growth over time as these topsoils weather will determine whether these trends continue.

  17. Transgenic poplar expressing the pine GS1a show alterations in nitrogen homeostasis during drought.

    PubMed

    Molina-Rueda, Juan Jesús; Kirby, Edward G

    2015-09-01

    Transgenic hybrid poplars engineered to express ectopically the heterologous pine cytosolic GS1a display a number of significant pleiotropic phenotypes including enhanced growth, enhanced nitrogen use efficiency, and resistance to drought stress. The present study was undertaken in order to assess mechanisms whereby ectopic expression of pine GS1a in transgenic poplars results in enhanced agronomic phenotypes. Microarray analysis using the Agilent Populus whole genome array has allowed identification of genes differentially expressed between wild type (WT) and GS transgenics in four tissues (sink leaves, source leaves, stems, and roots) under three growth conditions (well-watered, drought, and recovery). Analysis revealed that differentially expressed genes in functional categories related to nitrogen metabolism show a trend of significant down-regulation in GS poplars compared to the WT, including genes encoding nitrate and nitrite reductases. The down-regulation of these genes was verified using qPCR, and downstream effects were further tested using NR activity assays. Results suggest that higher glutamine levels in GS transgenics regulate nitrate uptake and reduction. Transcript levels of nitrogen-related genes in leaves, including GS/GOGAT cycle enzymes, aspartate aminotransferase, GABA shunt enzymes, photorespiration enzymes, asparagine synthetase, phenylalanine ammonia lyase, isocitrate dehydrogenase, and PII, were also assessed using qPCR revealing significant differences between GS poplars and the WT. Moreover, metabolites related to these differentially expressed genes showed alterations in levels, including higher levels of GABA, hydroxyproline, and putrescine in the GS transgenic. These alterations in nitrogen homeostasis offer insights into mechanisms accounting for drought tolerance observed in GS poplars. PMID:26113157

  18. Transgenic poplar expressing the pine GS1a show alterations in nitrogen homeostasis during drought.

    PubMed

    Molina-Rueda, Juan Jesús; Kirby, Edward G

    2015-09-01

    Transgenic hybrid poplars engineered to express ectopically the heterologous pine cytosolic GS1a display a number of significant pleiotropic phenotypes including enhanced growth, enhanced nitrogen use efficiency, and resistance to drought stress. The present study was undertaken in order to assess mechanisms whereby ectopic expression of pine GS1a in transgenic poplars results in enhanced agronomic phenotypes. Microarray analysis using the Agilent Populus whole genome array has allowed identification of genes differentially expressed between wild type (WT) and GS transgenics in four tissues (sink leaves, source leaves, stems, and roots) under three growth conditions (well-watered, drought, and recovery). Analysis revealed that differentially expressed genes in functional categories related to nitrogen metabolism show a trend of significant down-regulation in GS poplars compared to the WT, including genes encoding nitrate and nitrite reductases. The down-regulation of these genes was verified using qPCR, and downstream effects were further tested using NR activity assays. Results suggest that higher glutamine levels in GS transgenics regulate nitrate uptake and reduction. Transcript levels of nitrogen-related genes in leaves, including GS/GOGAT cycle enzymes, aspartate aminotransferase, GABA shunt enzymes, photorespiration enzymes, asparagine synthetase, phenylalanine ammonia lyase, isocitrate dehydrogenase, and PII, were also assessed using qPCR revealing significant differences between GS poplars and the WT. Moreover, metabolites related to these differentially expressed genes showed alterations in levels, including higher levels of GABA, hydroxyproline, and putrescine in the GS transgenic. These alterations in nitrogen homeostasis offer insights into mechanisms accounting for drought tolerance observed in GS poplars.

  19. Forest biorefinery: Potential of poplar phytochemicals as value-added co-products.

    PubMed

    Devappa, Rakshit K; Rakshit, Sudip K; Dekker, Robert F H

    2015-11-01

    The global forestry industry after experiencing a market downturn during the past decade has now aimed its vision towards the integrated biorefinery. New business models and strategies are constantly being explored to re-invent the global wood and pulp/paper industry through sustainable resource exploitation. The goal is to produce diversified, innovative and revenue generating product lines using on-site bioresources (wood and tree residues). The most popular product lines are generally produced from wood fibers (biofuels, pulp/paper, biomaterials, and bio/chemicals). However, the bark and other tree residues like foliage that constitute forest wastes, still remain largely an underexploited resource from which extractives and phytochemicals can be harnessed as by-products (biopharmaceuticals, food additives and nutraceuticals, biopesticides, cosmetics). Commercially, Populus (poplar) tree species including hybrid varieties are cultivated as a fast growing bioenergy crop, but can also be utilized to produce bio-based chemicals. This review identifies and underlines the potential of natural products (phytochemicals) from Populus species that could lead to new business ventures in biorefineries and contribute to the bioeconomy. In brief, this review highlights the importance of by-products/co-products in forest industries, methods that can be employed to extract and purify poplar phytochemicals, the potential pharmaceutical and other uses of >160 phytochemicals identified from poplar species - their chemical structures, properties and bioactivities, the challenges and limitations of utilizing poplar phytochemicals, and potential commercial opportunities. Finally, the overall discussion and conclusion are made considering the recent biotechnological advances in phytochemical research to indicate the areas for future commercial applications from poplar tree species.

  20. South Fork Telephone Switchboard Building, interior west room showing hardwood ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    South Fork Telephone Switchboard Building, interior west room showing hardwood floor; view south - Fort McKinley, South Fork Telephone Switchboard Building, South side of Weymouth Way, approximately 100 feet west of East Side Drive, Great Diamond Island, Portland, Cumberland County, ME

  1. Prioritizing bottomland hardwood forest sites for protection and augmentation

    USGS Publications Warehouse

    Carter, J.; Biagas, J.

    2007-01-01

    Bottomland hardwood forest has been greatly diminished by conversion to agriculture. Less than 25% of the pre-Columbian bottomland hardwood forests remain in the southeastern United States. Because of the valuable ecological and hydrological functions performed by these forests, their conservation and restoration has been a high priority. Part of these restoration efforts has focused on developing tools that can be used for both assessments at the landscape level and policy implementation at the local level. The distribution of bottomland hardwood forests in the Cache and White River watersheds in eastern Arkansas were examined using existing GIS databases. Criteria were developed to select areas that should be conserved or augmented for wildlife habitat. Over 67% of the study area was classified as agriculture, with bottomland hardwood forest the next largest habitat class. The thickness of a forest fragment was defined as the radius of the largest circle that can be inscribed in a fragment. Thickness was used in three ways. First, individual forest fragments were identified and selected based on ecological function using criteria we established. Second, individual fragments that were too small to support interior species, but large enough that if moderately augmented they could recover that function, were identified and selected. These augmentable fragments were further prioritized by adjacency to habitat that might be suitable for reforestation, namely agriculture. Third, watersheds were prioritized for conservation and augmentation based on the size and distributions of forest fragment thickness and area within each watershed.

  2. A System for Dosage-Based Functional Genomics in Poplar[OPEN

    PubMed Central

    2015-01-01

    Altering gene dosage through variation in gene copy number is a powerful approach to addressing questions regarding gene regulation, quantitative trait loci, and heterosis, but one that is not easily applied to sexually transmitted species. Elite poplar (Populus spp) varieties are created through interspecific hybridization, followed by clonal propagation. Altered gene dosage relationships are believed to contribute to hybrid performance. Clonal propagation allows for replication and maintenance of meiotically unstable ploidy or structural variants and provides an alternative approach to investigating gene dosage effects not possible in sexually propagated species. Here, we built a genome-wide structural variation system for dosage-based functional genomics and breeding of poplar. We pollinated Populus deltoides with gamma-irradiated Populus nigra pollen to produce >500 F1 seedlings containing dosage lesions in the form of deletions and insertions of chromosomal segments (indel mutations). Using high-precision dosage analysis, we detected indel mutations in ∼55% of the progeny. These indels varied in length, position, and number per individual, cumulatively tiling >99% of the genome, with an average of 10 indels per gene. Combined with future phenotype and transcriptome data, this population will provide an excellent resource for creating and characterizing dosage-based variation in poplar, including the contribution of dosage to quantitative traits and heterosis. PMID:26320226

  3. Diversity of arthropod community in transgenic poplar-cotton ecosystems.

    PubMed

    Zhang, D J; Lu, Z Y; Liu, J X; Li, C L; Yang, M S

    2015-12-02

    Poplar-cotton agro-ecosystems are the main agricultural planting modes of plain cotton fields in China. Here, we performed a systematic survey of the diversity and population of arthropod communities in four different combination of poplar-cotton eco-systems, including I) non-transgenic poplar and non-transgenic cotton fields; II) non-transgenic poplar and transgenic cotton fields [Bacillus thuringiensis (Bt) cotton]; III) Bt transgenic poplar (high insect resistant strain Pb29) and non-transgenic cotton; and IV) transgenic poplar and transgenic cotton fields, over a period of 3 years. Based on the statistical methods used to investigate community ecology, the effects of transgenic ecosystems on the whole structure of the arthropod community, on the structure of arthropods in the nutritive layer, and on the similarity of arthropod communities were evaluated. The main results were as follows: the transgenic poplar-cotton ecosystem has a stronger inhibitory effect on insect pests and has no impact on the structure of the arthropod community, and therefore, maintains the diversity of the arthropod community. The character index of the community indicated that the structure of the arthropod community of the transgenic poplar-cotton ecosystem was better than that of the poplar-cotton ecosystem, and that system IV had the best structure. As for the abundance of nutritional classes, the transgenic poplar-cotton ecosystem was also better than that of the non-transgenic poplar-cotton ecosystem. The cluster analysis and similarity of arthropod communities between the four different transgenic poplar-cotton ecosystems illustrated that the structure of the arthropod community excelled in the small sample of the transgenic poplar-cotton ecosystems.

  4. Decomposition of hardwood leaves grown under elevated O[sub 3] and/or CO[sub 2

    SciTech Connect

    Boerner, R.E.J.; Rebbeck, J. Northeastern Forest Experiment Station, Delaware, OH )

    1993-06-01

    We measured mass loss and N release from leaves of three hardwoods which varied in O[sub 3] sensitivity: O[sub 3]-tolerant sugar maple (Acer saccharum/SM), black cherry (Prunus serotina/BC), and putatively O[sub 3]-sensitive yellow poplar (Liriodendron tulipifera/YP), grown in pots in charcoal-filtered air (CF), ambient O[sub 3], or twice ambient O[sub 3] (2X) in open top chambers. Mass loss was not affected by the O[sub 3] regime in which the leaves were grown. k values averaged SM:-0.707, BC:-0.613, and YP:-0.859. N loss from ambient O[sub 3]-grown SM was significantly greater than from CF; N loss from BC did not differ among treatments. Significantly less N was released from CF-grown YP leaves than from O[sup 3]-treated leaves. YP leaves from plants grown in pots at 2X O[sub 3] and 350 ppm supplemental CO[sub 2] in CSTRs loss 40% as much mass and 27% as much N over one year as did leaves from YP grown in CF or 2X O[sub 3]. Thus, for leaves from plants grown in pots in fumigation chambers, the concentrations of both O[sub 3] and CO[sub 2] can affect N release from litter incubated in the field whereas mass loss rate was affected only by CO[sub 2].

  5. Repeated unidirectional introgression towards Populus balsamifera in contact zones of exotic and native poplars.

    PubMed

    Thompson, Stacey Lee; Lamothe, Manuel; Meirmans, Patrick G; Périnet, Pierre; Isabel, Nathalie

    2010-01-01

    As the evolutionary significance of hybridization is largely dictated by its extent beyond the first generation, we broadly surveyed patterns of introgression across a sympatric zone of two native poplars (Populus balsamifera, Populus deltoides) in Quebec, Canada within which European exotic Populus nigra and its hybrids have been extensively planted since the 1800s. Single nucleotide polymorphisms (SNPs) that appeared fixed within each species were characterized by DNA-sequencing pools of pure individuals. Thirty-five of these diagnostic SNPs were employed in a high-throughput assay that genotyped 635 trees of different age classes, sampled from 15 sites with various degrees of anthropogenic disturbance. The degree of admixture within sampled trees was then assessed through Bayesian clustering of genotypes. Hybrids were present in seven of the populations, with 2.4% of all sampled trees showing spontaneous admixture. Sites with hybrids were significantly more disturbed than pure stands, while hybrids comprised both immature juveniles and trees of reproductive age. All three possible F1s were detected. Advanced-generation hybrids were consistently biased towards P. balsamifera regardless of whether hybridization had occurred with P. deltoides or P. nigra. Gene exchange between P. deltoides and P. nigra was not detected beyond the F1 generation; however, detection of a trihybrid demonstrates that even this apparent reproductive isolation does not necessarily result in an evolutionary dead end. Collectively, results demonstrate the natural fertility of hybrid poplars and suggest that introduced genes could potentially affect the genetic integrity of native trees, similar to that arising from introgression between natives.

  6. System and method for conditioning a hardwood pulp liquid hydrolysate

    SciTech Connect

    Waite, Darrell M; Arnold, Richard; St. Pierre, James; Pendse, Hemant P; Ceckler, William H

    2013-12-17

    A system and method for hardwood pulp liquid hydrolysate conditioning includes a first evaporator receives a hardwood mix extract and outputting a quantity of vapor and extract. A hydrolysis unit receives the extract, hyrolyzes and outputs to a lignin separation device, which separates and recovers a quantity of lignin. A neutralization device receives extract from the lignin separation device and a neutralizing agent, producing a mixture of solid precipitate and a fifth extract. The solid precipitate is removed from the fifth extract. A second evaporator removes a quantity of acid from the fifth extract in a vapor form. This vapor may be recycled to improve total acid recovery or discarded. A desalination device receives the diluted extract, separates out some of the acid and salt and outputs a desalinated solution.

  7. System and method for conditioning a hardwood pulp liquid hydrolysate

    DOEpatents

    Waite, Darrell; Arnold, Richard; St. Pierre, James; Pendse, Hemant P.; Ceckler, William H.

    2015-06-30

    A system and method for hardwood pulp liquid hydrolysate conditioning includes a first evaporator receives a hardwood mix extract and outputting a quantity of vapor and extract. A hydrolysis unit receives the extract, hydrolyzes and outputs to a lignin separation device, which separates and recovers a quantity of lignin. A neutralization device receives extract from the lignin separation device and a neutralizing agent, producing a mixture of solid precipitate and a fifth extract. The solid precipitate is removed from the fifth extract. A second evaporator removes a quantity of acid from the fifth extract in a vapor form. This vapor may be recycled to improve total acid recovery or discarded. A desalination device receives the diluted extract, separates out some of the acid and salt and outputs a desalinated solution.

  8. Directional scattering properties of a winter deciduous hardwood canopy

    NASA Technical Reports Server (NTRS)

    Kimes, Daniel S.; Newcomb, W. Wayne

    1987-01-01

    The unique directional scattering properties of a deciduous hardwood forest without leaves during the winter period was measured in a visible and near-infrared band. A radiative transfer model was used to explore the scattering properties of such a forest. The reflectance distributions look similar to sparse homogeneous vegetation canopies. The overall reflectance distribution is a combination of the extreme azimuthal scattering behavior of tree limbs and the more typical scattering behavior of understory litter.

  9. Early secondary succession in bottomland hardwood forests of southeastern Virginia.

    PubMed

    Spencer, D R; Perry, J E; Silberhorn, G M

    2001-04-01

    Addressing the need for reference sites that permit wetland managers to evaluate the relative success of wetland restoration efforts, this project examines the early successional properties of a chronosequence of 17 forested wetlands that have been clear-cut and allowed to naturally revegetate. Ordinations performed on the data using CANOCO software indicated three general types of communities- one dominated by bald cypress (Taxodium distichum) and water tupelo (Nyssa aquatica), one dominated by black willow (Salix nigra), and one with a species composition similar to that of a mature stand of bottomland hardwoods. These divisions were correlated with the percentage of stems originating as coppice on stumps leftover from the clear-cut. In particular, the bottomland hardwood stands were regenerating predominantly as coppice, while the cypress/tupelo and black willow stands were regenerating primarily as seedlings. As indicated by the earlier development of overstory basal area, coppice sites were also regenerating much faster. The hydrology of a site also exhibited a strong impact on the rate of regeneration, with the semipermanently to permanently flooded portions of sites often exhibiting little or no regeneration. The results indicate that, because of the overwhelming reliance on coppice sprouts as the main source of stems and the concomitant enhanced rates of regeneration, certain vegetative parameters of clear-cut bottomiand hardwood stands would not be effective benchmarks by which to judge the relative success of creation and restoration efforts.

  10. Control of hardwood regeneration in restored carolina bay depression wetlands.

    SciTech Connect

    Moser, Lee, J.; Barton, Christopher, D.; Blake, John, I.

    2012-06-01

    Carolina bays are depression wetlands located in the coastal plain region of the eastern United States. Disturbance of this wetland type has been widespread, and many sites contain one or more drainage ditches. Restoration of bays is of interest because they are important habitats for rare flora and fauna. Previous bay restoration projects have identified flood-tolerant woody competitors in the seedbank and re-sprouting as impediments to the establishment of desired herbaceous wetland vegetation communities. We restored 3 bays on the Savannah River Site, South Carolina, by plugging drainage ditches, harvesting residual pine/hardwood stands within the bays, and monitoring the vegetative response of the seedbank to the hydrologic change. We applied a foliar herbicide on one-half of each bay to control red maple (Acerrubrum), sweetgum (Liquidambar styraciflua), and water oak (Quercus nigra) sprouting, and we tested its effectiveness across a hydrologic gradient in each bay. Hardwood regeneration was partially controlled by flooding in bays that exhibited long growing season hydroperiods. The findings also indicated that herbicide application was an effective means for managing hardwood regeneration and re-sprouting in areas where hydrologic control was ineffective. Herbicide use had no effect on species richness in the emerging vegetation community. In late-season drawdown periods, or in bays where hydroperiods are short, more than one herbicide application may be necessary.

  11. 40 CFR 63.2264 - Initial compliance demonstration for a hardwood veneer dryer.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... CATEGORIES (CONTINUED) National Emission Standards for Hazardous Air Pollutants: Plywood and Composite Wood Products Initial Compliance Requirements § 63.2264 Initial compliance demonstration for a hardwood...

  12. 40 CFR 63.2264 - Initial compliance demonstration for a hardwood veneer dryer.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... CATEGORIES (CONTINUED) National Emission Standards for Hazardous Air Pollutants: Plywood and Composite Wood Products Initial Compliance Requirements § 63.2264 Initial compliance demonstration for a hardwood...

  13. 40 CFR 63.2264 - Initial compliance demonstration for a hardwood veneer dryer.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... CATEGORIES (CONTINUED) National Emission Standards for Hazardous Air Pollutants: Plywood and Composite Wood Products Initial Compliance Requirements § 63.2264 Initial compliance demonstration for a hardwood...

  14. Comparison between soil and biomass carbon in adjacent hardwood and red pine forests

    SciTech Connect

    Perala, D.A.; Rollinger, J.L.; Wilson, D.M.

    1995-06-01

    The distribution of carbon in soil and biomass was studied across Minnesota, Wisconsin, and Michigan, USA, in 40 pole-sized red pine (Pinus resinosa Ait.) plantations paired with adjacent hardwood stands. Pine and hardwood stands shared a common boundary and soil. Hardwood stands were mixed species, naturally regenerated second growth following logging. Carbon in total, standing crop averaged the same in both hardwood and red pine forest types, although the hardwoods averaged 14 years older than red pine. Coarse woody debris, shrubs, and herbs contained little carbon. Only the forest floor carbon pool was significantly different between forest types. Forest floor had a greater mass beneath red pine than hardwoods. There was no difference in total ecosystem carbon between red pine and hardwood stands. Total mineral soil aggregated across the depth profile contained the same total amount of carbon in both pine and hardwood stands; however, the carbon was found in different vertical patterns. Amounts of carbon in the upper levels of soil (0--4 cm) were higher under hardwoods, and amounts were higher under red pine at the 8--16 cm and 16--32 cm soil depths. Where July air temperatures were relatively cool, red pine stored carbon more efficiently both in the forest floor and deep in the soil. Red pine also sequestered more carbon in mineral soil with increasing April--September precipitation.

  15. Hexahydro-1,3,5-trinitro-1,3,5-triazine translocation in poplar trees

    SciTech Connect

    Thompson, P.L.; Ramer, L.A.; Schnoor, J.L.

    1999-02-01

    This article evaluates the translocation of the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in hybrid poplar trees (Populus deltoides x nigra, DN34) grown in hydroponic solutions. Mass balances with [U-{sup 14}C]RDX were used to assess RDX translocation. Up to 60% of the RDX uptaken by the tree accumulated in leaf tissues. Analysis of plant extracts by high-performance liquid chromatography equipped with radiochemical detection indicated that RDX was not significantly transformed during exposure periods of up to 7 d. The bioaccumulation of RDX may be an important concern for phytoremediation efforts.

  16. 6. GENERAL VIEW EAST FROM ROOFTOP OF POPLAR FOREST TOWARDS ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    6. GENERAL VIEW EAST FROM ROOFTOP OF POPLAR FOREST TOWARDS SUMMER KITCHEN (FOREGROUND) AND DAIRY; CHIMNEY OF SOUTH TENANT HOUSE BARELY VISIBLE THROUGH TREES; EAST PRIVY RARELY VISIBLE OVER EAST MOUND (1987) - Poplar Forest, Summer Kitchen, State Route 661, Forest, Bedford County, VA

  17. 76 FR 28308 - Modification of Class E Airspace; Poplar, MT

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-17

    ...) Global Positioning System (GPS) standard instrument approach procedures at Poplar Municipal Airport... Support Group, Western Service Center, 1601 Lind Avenue SW., Renton, WA 98057; telephone (425) 203-4537... proposed rulemaking to establish additional controlled airspace at Poplar, MT (76 FR 8921)....

  18. Enantioselective Biotransformation of Chiral PCBs in Whole Poplar Plants

    PubMed Central

    Zhai, Guangshu; Hu, Dingfei; Lehmler, Hans-Joachim; Schnoor, Jerald L.

    2011-01-01

    Chiral PCBs have been used as molecular probes of biological metabolic processes due to their special physical, chemical and biological properties. Many animal studies showed the enantioselective biotransformation of chiral PCBs, but it is unclear whether plants can enantioselectively biotransform chiral PCBs. In order to explore the enantioselectivity of chiral PCBs in whole plants, poplars (Populus deltoides × nigra, DN34), a model plant with complete genomic sequence, were hydroponically exposed to 2,2′,3,5′,6-pentachlorobiphenyl (PCB95) and 2,2′,3,3′,6,6′-hexachlorobiphenyl (PCB136) for 20 days. PCB95 and PCB136 were shown to be absorbed, taken-up and translocated in whole poplars, and they were detected in various tissues of whole poplars. However, the enantioselectivity of poplar for PCB95 and PCB136 proved to be quite different. The first eluting enantiomer of PCB95 was enantioselectively removed in whole poplar, especially in the middle and bottom xylem. It was likely enantioselectively metabolized inside poplar tissues, in contrast to racemic mixtures of PCB95 remaining in hydroponic solutions in contact with plant roots of whole and dead poplars. Unlike PCB95, PCB136 remained nearly racemic in most parts of whole poplars after 20 days exposure. These results suggest that PCB136 is more difficult to be enantioslectively biotransformed than PCB95 in whole poplars. This is the first evidence of enantioselectivity of chiral PCBs in whole plants, and suggests that poplars can enantioselectively biotransform at least one chiral PCB. PMID:21329345

  19. The Central Hardwoods Virtual Forest Version 2.0. [CD-ROM].

    ERIC Educational Resources Information Center

    Indiana Univ.-Purdue Univ., Indianapolis.

    This CD-ROM is the second in a series of CDs allowing students to explore the trees and animals of the northern boreal forest. Using QuickTime Virtual Reality (QTVR), the Central Hardwood Virtual Forest is designed so that students are able to see views from inside the central hardwood forest and look up or down or spin around 360 degrees. The…

  20. 75 FR 7044 - T&S Hardwoods, Inc., Sylva, NC; Notice of Negative Determination Regarding Application for...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-16

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF LABOR Employment and Training Administration T&S Hardwoods, Inc., Sylva, NC; Notice of Negative Determination... facility to a foreign country. T&S Hardwoods, Inc. did not import hardwood lumber and did not...

  1. Avian response to bottomland hardwood reforestation: the first 10 years

    USGS Publications Warehouse

    Twedt, D.J.; Wilson, R.R.; Henne-Kerr, J.L.; Grosshuesch, D.A.

    2002-01-01

    Bttomland hardwood forests were planted on agricultural fields in Mississippi and Louisiana using either predominantly Quercus species (oaks) or Populus deltoides (eastern cottonwood). We assessed avian colonization of these reforested sites between 2 and 10 years after planting. Rapid vertical growth of cottonwoods (circa 2 - 3 m / yr) resulted in sites with forest structure that supported greater species richness of breeding birds, increased Shannon diversity indices, and supported greater territory densities than on sites planted with slower-growing oak species. Grassland birds (Spiza americana [Dickcissel], and Sturnella magna [Eastern Meadowlark]) were indicative of species breeding on oak-dominated reforestation # 10 years old. Agelaius phoeniceus (Red-winged Blackbird) and Colinus virginianus (Northern Bobwhite) characterized cottonwood reforestation # 4 years old, whereas 14 species of shrub-scrub birds (e.g., Passerina cyanea [Indigo Bunting]) and early-successional forest birds (e.g., Vireo gilvus [Warbling Vireo]) typified cottonwood reforestation 5 to 9 years after planting. Rates of daily nest survival did not differ between reforestation strategies. Nest parasitism increased markedly in older cottonwood stands, but was overwhelmed by predation as a cause of nest failure. Based on Partners in Flight prioritization scores and territory densities, the value of cottonwood reforestation for avian conservation was significantly greater than that of oak reforestation during their first 10 years. Because of benefits conferred on breeding birds, we recommend reforestation of bottomland hardwoods include a high proportion of fast-growing, early successional species such as cottonwood.

  2. Results of a workshop concerning ecological zonation in bottomland hardwoods

    USGS Publications Warehouse

    Roelle, James E.; Auble, Gregor T.; Hamilton, David B.; Johnson, Richard L.; Segelquist, Charles A.

    1987-01-01

    Under Section 404 of the Clean Water Act, the U.S. Environmental Protection Agency (EPA) has regulatory responsibilities concerning the discharge of dredged or fill material into the Nation's waters. In addition to its advisory role in the U.S. Army Corps of Engineers' permit program, EPA has a number of specific authorities, including formulation of the Section 404(b)(1) Guidelines, use of Section 404(c) to prohibit disposal at particular sites, and enforcement actions for unauthorized discharges. A number of recent court cases focus on the geographic scope of Section 404 jurisdiction in potential bottomland hardwood (BLH) wetlands and the nature of landclearing activities in these areas that require a permit under Section 404. Accordingly, EPA needs to establish the scientific basis for implementing its responsibilities under Section 404 in bottomland hardwoods. EPA is approaching this task through a series of workshops designed to provide current scientific information on bottomland hardwoods and to organize that information in a manner pertinent to key questions, including the following. What are the characteristics of bottomland hardwoods (in terms of hydrology, soils, vegetation, fish, wildlife, agricultural potential, and the like) and how can the functions (e.g., flood storage, water quality maintenance, detrital export) that they perform best be quantified? How do perturbations like landclearing, levee construction, and drainage impact the functions that bottomland hardwoods perform and how can these effects best be quantified? And finally, how significant are the impacts and how is their significance likely to change under various management scenarios? The first workshop in this series was held December 3-7, 1984, in St. Francisville, Louisiana. The workshop was attended by over 40 scientists and regulators (see ACKNOWLEDGMENTS section) and facilitated by the editors of this report under an Interagency Agreement between EPA and the U.S. Fish and Wildlife

  3. Interaction of drought and ozone exposure on isoprene emission from extensively cultivated poplar.

    PubMed

    Yuan, Xiangyang; Calatayud, Vicent; Gao, Feng; Fares, Silvano; Paoletti, Elena; Tian, Yuan; Feng, Zhaozhong

    2016-10-01

    The combined effects of ozone (O3 ) and drought on isoprene emission were studied for the first time. Young hybrid poplars (clone 546, Populus deltoides cv. 55/56 x P. deltoides cv. Imperial) were exposed to O3 (charcoal-filtered air, CF, and non-filtered air +40 ppb, E-O3 ) and soil water stress (well-watered, WW, and mild drought, MD, one-third irrigation) for 96 days. Consistent with light-saturated photosynthesis (Asat ), intercellular CO2 concentration (Ci ) and chlorophyll content, isoprene emission depended on drought, O3 , leaf position and sampling time. Drought stimulated emission (+38.4%), and O3 decreased it (-40.4%). Ozone increased the carbon cost per unit of isoprene emission. Ozone and drought effects were stronger in middle leaves (13th-15th from the apex) than in upper leaves (6th-8th). Only Asat showed a significant interaction between O3 and drought. When the responses were up-scaled to the entire-plant level, however, drought effects on total leaf area translated into around twice higher emission from WW plants in clean air than in E-O3 . Our results suggest that direct effects on plant emission rates and changes in total leaf area may affect isoprene emission from intensively cultivated hybrid poplar under combined MD and O3 exposure, with important feedbacks for air quality.

  4. Interaction of drought and ozone exposure on isoprene emission from extensively cultivated poplar.

    PubMed

    Yuan, Xiangyang; Calatayud, Vicent; Gao, Feng; Fares, Silvano; Paoletti, Elena; Tian, Yuan; Feng, Zhaozhong

    2016-10-01

    The combined effects of ozone (O3 ) and drought on isoprene emission were studied for the first time. Young hybrid poplars (clone 546, Populus deltoides cv. 55/56 x P. deltoides cv. Imperial) were exposed to O3 (charcoal-filtered air, CF, and non-filtered air +40 ppb, E-O3 ) and soil water stress (well-watered, WW, and mild drought, MD, one-third irrigation) for 96 days. Consistent with light-saturated photosynthesis (Asat ), intercellular CO2 concentration (Ci ) and chlorophyll content, isoprene emission depended on drought, O3 , leaf position and sampling time. Drought stimulated emission (+38.4%), and O3 decreased it (-40.4%). Ozone increased the carbon cost per unit of isoprene emission. Ozone and drought effects were stronger in middle leaves (13th-15th from the apex) than in upper leaves (6th-8th). Only Asat showed a significant interaction between O3 and drought. When the responses were up-scaled to the entire-plant level, however, drought effects on total leaf area translated into around twice higher emission from WW plants in clean air than in E-O3 . Our results suggest that direct effects on plant emission rates and changes in total leaf area may affect isoprene emission from intensively cultivated hybrid poplar under combined MD and O3 exposure, with important feedbacks for air quality. PMID:27411672

  5. Lignin composition in cambial tissues of poplar.

    PubMed

    Christiernin, M

    2006-01-01

    The cambial tissues of a Populus balsamifera, Balsam poplar clone were studied during a growth season. The Klason and acid-soluble lignin contents were determined as well as the carbohydrate monomer distribution and the protein content. Both the phloem and the xylem sides of the cambial region were examined. The samples were analyzed by thioacidolysis and structures of dimeric products were determined by mass spectrometry after desulphuration. Chemical analysis of samples during the growth season was combined with microscopy of embedded specimens that showed the state of cell differentiation at the time of sampling. In spring and early summer, growth is very rapid and the intention was to collect tissue in which exclusively the middle lamella/primary cell wall had begun to lignify. The Klason lignin, protein content and carbohydrate monomer distribution showed that all the specimens from the cambial tissues sampled during a growth season contained predominantly middle lamella and primary walls; except for the developing xylem sampled in August where the carbohydrate composition showed that secondary walls were present. Thioacidolysis showed that the lignin from the cambial tissues had more condensed structures than the lignin from the reference balsam poplar clone wood. More guaiacyl than syringyl units were detected and mass spectrometry showed that the cambial tissues contained more lignin structures with end-groups than the reference sample. These results suggest that lignification in the cambial layer and early developing xylem may take place predominantly in a bulk fashion during the summer.

  6. Hardwood tree growth on amended mine soils in west virginia.

    PubMed

    Wilson-Kokes, Lindsay; Delong, Curtis; Thomas, Calene; Emerson, Paul; O'Dell, Keith; Skousen, Jeff

    2013-09-01

    Each year surface mining in Appalachia disrupts large areas of forested land. The Surface Mining Control and Reclamation Act requires coal mine operators to establish a permanent vegetative cover after mining, and current practice emphasizes soil compaction and planting of competitive forage grasses to stabilize the site and control erosion. These practices hinder recolonization of native hardwood trees on these reclaimed sites. Recently reclamation scientists and regulators have encouraged re-establishment of hardwood forests on surface mined land through careful selection and placement of rooting media and proper selection and planting of herbaceous and tree species. To evaluate the effect of rooting media and soil amendments, a 2.8-ha experimental plot was established, with half of the plot being constructed of weathered brown sandstone and half constructed of unweathered gray sandstone. Bark mulch was applied to an area covering both sandstone types, and the ends of the plot were hydroseeded with a tree-compatible herbaceous seed mix, resulting in eight soil treatments. Twelve hardwood tree species were planted, and soil chemical properties and tree growth were measured annually from 2007 to 2012. After six growing seasons, average tree volume index was higher for trees grown on brown sandstone (5333 cm) compared with gray sandstone (3031 cm). Trees planted in mulch outperformed trees on nonmulched treatments (volume index of 6187 cm vs. 4194 cm). Hydroseeding with a tree-compatible mix produced greater ground cover (35 vs. 15%) and resulted in greater tree volume index than nonhydroseed areas (5809 vs. 3403 cm). Soil chemical properties were improved by mulch and improved tree growth, especially on gray sandstone. The average pH of brown sandstone was 5.0 to 5.4, and gray sandstone averaged pH 6.9 to 7.7. The mulch treatment on gray sandstone resulted in tree growth similar to brown sandstone alone and with mulch. After 6 yr, tree growth on brown sandstone was

  7. Poplar and its bacterial endophytes: coexistence and harmony

    SciTech Connect

    van der Lelie, D.; Taghavi, S.; Monchy, S.; Schwender, J.; Miller, L.; Ferrieri, R.; Rogers, A.; Zhu, W.; Weyens, N.; Vangronsveld, J.; Newman, L.

    2009-09-01

    Associations between plants and microorganisms are very complex and are the subject of an increasing number of studies. Here, we specifically address the relationship between poplar and its endophytic bacteria. The role and importance of endophytic bacteria in growth and development of their host plants is still underestimated. However, since many endophytes have a beneficial effect on their host, an improved understanding of the interaction between poplar and its endophytic bacteria has the potential to provide major breakthroughs that will improve the productivity of poplar. Endophytic bacteria can improve plant growth and development in a direct or indirect way. Direct plant growth promoting mechanisms may involve nitrogen fixation, production of plant growth regulators such as auxins, cytokinins and gibberellins, and suppression of stress ethylene synthesis by 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. Endophytic bacteria can indirectly benefit the plant by preventing the growth or activity of plant pathogens through competition for space and nutrients, antibiosis, production of hydrolytic enzymes, inhibition of pathogen-produced enzymes or toxins, and through systemic induction of plant defense mechanisms. Examples of applications for custom endophyte-host partnerships include improved productivity and establishment of poplar trees on marginal soils and the phytoremediation of contaminated soils and groundwater. A systems biology approach to understand the synergistic interactions between poplar and its beneficial endophytic bacteria represents an important field of research, which is facilitated by the recent sequencing of the genomes of poplar and several of its endophytic bacteria.

  8. Molecular analysis of poplar defense against herbivory: comparison of wound- and insect elicitor-induced gene expression.

    PubMed

    Major, Ian T; Constabel, C Peter

    2006-01-01

    In order to characterize defense responses of hybrid poplar (Populus trichocarpax P. deltoides), we profiled leaf transcript patterns elicited by wounding and by regurgitant from forest tent caterpillar (FTC; Malacosoma disstria), a Lepidopteran defoliator of poplars. Macroarrays were used to compare transcript profiles. Both FTC-regurgitant (FTC-R) and mechanical wounding with pliers elicited expression of a variety of genes, and for these genes our analysis indicated that these treatments induced qualitatively similar responses. Similarly, a comparison of responses of directly treated and systemically induced leaves indicated extensive overlap in the sets of induced genes. FTC-R was found to contain the insect-derived elicitor volicitin. The simulated herbivory treatments resulted in the induction of genes involved in poplar defense and secondary metabolism. We also identified wound-responsive genes with roles in primary metabolism, including a putative invertase, lipase, and acyl-activating enzyme; some of these genes may have roles in defense signaling. In addition, we found three unknown genes containing a ZIM motif which may represent novel transcription factors.

  9. Quantifying the effect of nitrogen-induced physiological and structural changes on poplar growth using a carbon-balance model.

    PubMed

    Coll, Lluís; Schneider, Robert; Berninger, Frank; Domenicano, Susy; Messier, Christian

    2011-04-01

    We evaluate the importance of changes in photosynthetic capacity, respiration rates, root shoot ratio, pipe model parameters and specific leaf area in the early-growth response of hybrid poplar to nitrogen availability. Juvenile growth simulations for trees with three different levels of leaf nitrogen concentration (N(leaf)) (low (1.2%), medium (2.4%) and high (3.6%)) were conducted with the carbon-balance model CROBAS. Five-year growth simulations showed the diameter and height of poplar trees to be, respectively, four and three times larger in plants with 2.4% N(leaf) compared with those with 1.2% N(leaf). Increasing N(leaf) from 2.4 to 3.6% resulted in 34 and 16% higher diameter and height growth of trees. According to the model, changes in the photosynthetic capacity accounted for most of the differences in growth between trees with different levels of N(leaf); the other parameters were much less influential. This suggests that in fast-growing early-successional broadleaved species such as poplars, physiological rather than allocational and morphological traits predominate in determining growth, at least under non-limiting light conditions.

  10. Characterization of antibiosis and antixenosis to the woolly poplar aphid (Hemiptera: Aphididae) in the bark of different poplar genotypes.

    PubMed

    Pointeau, Sophie; Ameline, Arnaud; Sallé, Aurélien; Bankhead-Dronnet, Stéphanie; Lieutier, François

    2013-02-01

    The woolly poplar aphid, Phloeomyzus passerinii (Signoret) (Hemiptera: Aphididae), is a major pest of poplar plantations in the Mediterranean basin and the Near East. Aphids colonize poplar trunks and feed upon the cortical parenchyma. Despite the economic importance of poplar, little is known about the mechanisms involved in poplar resistance to this pest. However, Populus x canadensis Moench genotypes show various levels of resistance to P. passerinii. This study has investigated the type of poplar resistance (antibiosis or antixenosis) by assessing aphid settlement, physiology (survival, development, and reproduction), and stylet penetration behavior (electrical penetration graph) on three P. x canadensis genotypes; '1214' (susceptible), 'Brenta' (resistant), and '145/51' (intermediate). Because settlement was reduced, the highly resistant genotype Brenta exhibited surface antixenosis. In addition, nymphal survival was null on Brenta, and twice less adult aphid initiated a sustained intracellular phase in the cortical parenchyma of that genotype compared with the other two genotypes. Thus, Brenta also showed parenchyma-located antixenosis coupled with antibiosis characteristic. In contrast, P. passerinii had no difficulty to initiate a sustained ingestion in the cortical parenchyma of the intermediate genotype 145/51, but decreased fecundity and lower intrinsic rate of natural increase were clear expressions of antibiosis. PMID:23448064

  11. AmeriFlux US-Wi8 Young hardwood clearcut (YHW)

    SciTech Connect

    Chen, Jiquan

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Wi8 Young hardwood clearcut (YHW). Site Description - The Wisconsin Clearcut Young Hardwood site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. The young hardwood clearcut site is one of ten sites that collectively represent the successional stages of development in the predominant stand types of a physically homogeneous landscape. In 2001, northern hardwood stands of all ages occupied 45% of the region.

  12. Transpirational demand affects aquaporin expression in poplar roots.

    PubMed

    Laur, Joan; Hacke, Uwe G

    2013-05-01

    Isohydric plants tend to maintain a water potential homeostasis primarily by controlling water loss via stomatal conductance. However, there is accumulating evidence that plants can also modulate water uptake in a dynamic manner. The dynamics of water uptake are influenced by aquaporin-mediated changes in root hydraulics. Most studies in this area have been conducted on herbaceous plants, and less is known about responses of woody plants. Here a study was conducted to determine how roots of hybrid poplar plants (Populus trichocarpa×deltoides) respond to a step change in transpirational demand. The main objective was to measure the expression of selected aquaporin genes and to assess how transcriptional responses correspond to changes in root water flow (Q R) and other parameters of water relations. A subset of plants was grown in shade and was subsequently exposed to a 5-fold increase in light level. Another group of plants was grown at ~95% relative humidity (RH) and was then subjected to lower RH while the light level remained unchanged. Both plant groups experienced a transient drop in stem water potentials. At 28h after the increase in transpirational demand, water potentials recovered. This recovery was associated with changes in the expression of PIP1 and PIP2 subfamily genes and an increase in Q R. Stomata of plants growing at high RH were larger and showed incomplete closure after application of abscisic acid. Since stomatal conductance remained high and unchanged in these plants, it is suggested that the recovery in water potential in these plants was largely driven by the increase in Q R. PMID:23599275

  13. Effect of lignin content on changes occurring in poplar cellulose ultrastructure during dilute acid pretreatment

    DOE PAGESBeta

    Sun, Qining; Foston, Marcus; Meng, Xianzhi; Sawada, Daisuke; Pingali, Sai Venkatesh; O’Neill, Hugh M.; Li, Hongjia; Wyman, Charles E.; Langan, Paul; Ragauskas, Art J.; et al

    2014-10-14

    Obtaining a better understanding of the complex mechanisms occurring during lignocellulosic deconstruction is critical to the continued growth of renewable biofuel production. A key step in bioethanol production is thermochemical pretreatment to reduce plant cell wall recalcitrance for downstream processes. Previous studies of dilute acid pretreatment (DAP) have shown significant changes in cellulose ultrastructure that occur during pretreatment, but there is still a substantial knowledge gap with respect to the influence of lignin on these cellulose ultrastructural changes. This study was designed to assess how the presence of lignin influences DAP-induced changes in cellulose ultrastructure, which might ultimately have largemore » implications with respect to enzymatic deconstruction efforts. Native, untreated hybrid poplar (Populus trichocarpa x Populus deltoids) samples and a partially delignified poplar sample (facilitated by acidic sodium chlorite pulping) were separately pretreated with dilute sulfuric acid (0.10 M) at 160°C for 15 minutes and 35 minutes, respectively . Following extensive characterization, the partially delignified biomass displayed more significant changes in cellulose ultrastructure following DAP than the native untreated biomass. With respect to the native untreated poplar, delignified poplar after DAP (in which approximately 40% lignin removal occurred) experienced: increased cellulose accessibility indicated by increased Simons’ stain (orange dye) adsorption from 21.8 to 72.5 mg/g, decreased cellulose weight-average degree of polymerization (DPw) from 3087 to 294 units, and increased cellulose crystallite size from 2.9 to 4.2 nm. These changes following DAP ultimately increased enzymatic sugar yield from 10 to 80%. We conclude that, overall, the results indicate a strong influence of lignin content on cellulose ultrastructural changes occurring during DAP. With the reduction of lignin content during DAP, the enlargement of

  14. Effect of lignin content on changes occurring in poplar cellulose ultrastructure during dilute acid pretreatment

    SciTech Connect

    Sun, Qining; Foston, Marcus; Meng, Xianzhi; Sawada, Daisuke; Pingali, Sai Venkatesh; O’Neill, Hugh M.; Li, Hongjia; Wyman, Charles E.; Langan, Paul; Ragauskas, Art J.; Kumar, Rajeev

    2014-10-14

    Obtaining a better understanding of the complex mechanisms occurring during lignocellulosic deconstruction is critical to the continued growth of renewable biofuel production. A key step in bioethanol production is thermochemical pretreatment to reduce plant cell wall recalcitrance for downstream processes. Previous studies of dilute acid pretreatment (DAP) have shown significant changes in cellulose ultrastructure that occur during pretreatment, but there is still a substantial knowledge gap with respect to the influence of lignin on these cellulose ultrastructural changes. This study was designed to assess how the presence of lignin influences DAP-induced changes in cellulose ultrastructure, which might ultimately have large implications with respect to enzymatic deconstruction efforts. Native, untreated hybrid poplar (Populus trichocarpa x Populus deltoids) samples and a partially delignified poplar sample (facilitated by acidic sodium chlorite pulping) were separately pretreated with dilute sulfuric acid (0.10 M) at 160°C for 15 minutes and 35 minutes, respectively . Following extensive characterization, the partially delignified biomass displayed more significant changes in cellulose ultrastructure following DAP than the native untreated biomass. With respect to the native untreated poplar, delignified poplar after DAP (in which approximately 40% lignin removal occurred) experienced: increased cellulose accessibility indicated by increased Simons’ stain (orange dye) adsorption from 21.8 to 72.5 mg/g, decreased cellulose weight-average degree of polymerization (DPw) from 3087 to 294 units, and increased cellulose crystallite size from 2.9 to 4.2 nm. These changes following DAP ultimately increased enzymatic sugar yield from 10 to 80%. We conclude that, overall, the results indicate a strong influence of lignin content on cellulose ultrastructural changes occurring during DAP. With the reduction of lignin content during DAP, the enlargement of

  15. First year survival of barefoot and containerized hardwood tree seedlings planted in northeast Texas lignite minesoils

    SciTech Connect

    Wood, J.; Denman, J.; Waxler, M.; Huber, D.A.

    1997-12-31

    Successful regeneration of hardwood tree seedlings is critical to the reclamation of quality wildlife habitat and commercial forests on lignite mines in northeast Texas. Because bareroot hardwood seedlings survival rates have often been lower than desired, the survival of containerized and bareroot hardwood tree seedlings was compared. Seven hardwood species, including six species of oaks, were planted in lignite minesoils on sites classified as bottomland, slope and upland. Three species were planted per site. Containerized seedlings were planted during the fall and winter, whereas bareroot seedlings were planted in the winter only. Survival was determined at the end of the first growing season. Results across all sites indicate that winter-planted containerized seedlings (74%) or bareroot seedlings (76%). Within the sites, the only significant difference was on upland sites where survival of winter-planted containerized seedlings (60%) was lower than bareroot seedlings (77%). Survival among species was not significantly different. There was no significant survival benefit from using more expensive containerized hardwood seedlings. The results also question the practice of planting containerized hardwood seedlings during the typical winter planting season for optimum survival.

  16. In Vivo Biotransformation of 3,3′,4,4′-Tetrachlorobiphenyl by Whole Plants−Poplars and Switchgrass

    PubMed Central

    2009-01-01

    Polychlorinated biphenyls (PCBs) are widely distributed persistent organic pollutants. In vitro research has shown that plant cell cultures might transform lower chlorinated congeners to hydroxylated PCBs, but there are few studies on in vivo metabolism of PCBs by intact whole plants. In this research, poplar plants (Populus deltoides × nigra, DN34) and switchgrass (Panicum vigratum, Alamo) were hydroponically exposed to 3,3′,4,4′-tetrachlorobiphenyl (CB77). Metabolism in plants occurred rapidly, and metabolites were detected after only a 24 h exposure. Rearrangement of chlorine atoms and dechlorination of CB77 by plants was unexpectedly observed. In addition, poplars were able to hydroxylate CB77 and the metabolite 6-hydroxy-3,3′,4,4′-tetrachlorobiphenyl (6-OH-CB77) was identified and quantified. Hybrid poplar was able to hydroxylate CB77, but switchgrass was not, suggesting that enzymatic transformations are plant specific. Sulfur-containing metabolites (from the action of sulfotransferases) were investigated in this study, but they were not detected in either poplar or switchgrass. PMID:19848168

  17. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

    PubMed Central

    Ralph, Steven G; Chun, Hye Jung E; Cooper, Dawn; Kirkpatrick, Robert; Kolosova, Natalia; Gunter, Lee; Tuskan, Gerald A; Douglas, Carl J; Holt, Robert A; Jones, Steven JM; Marra, Marco A; Bohlmann, Jörg

    2008-01-01

    Background The genus Populus includes poplars, aspens and cottonwoods, which will be collectively referred to as poplars hereafter unless otherwise specified. Poplars are the dominant tree species in many forest ecosystems in the Northern Hemisphere and are of substantial economic value in plantation forestry. Poplar has been established as a model system for genomics studies of growth, development, and adaptation of woody perennial plants including secondary xylem formation, dormancy, adaptation to local environments, and biotic interactions. Results As part of the poplar genome sequencing project and the development of genomic resources for poplar, we have generated a full-length (FL)-cDNA collection using the biotinylated CAP trapper method. We constructed four FLcDNA libraries using RNA from xylem, phloem and cambium, and green shoot tips and leaves from the P. trichocarpa Nisqually-1 genotype, as well as insect-attacked leaves of the P. trichocarpa × P. deltoides hybrid. Following careful selection of candidate cDNA clones, we used a combined strategy of paired end reads and primer walking to generate a set of 4,664 high-accuracy, sequence-verified FLcDNAs, which clustered into 3,990 putative unique genes. Mapping FLcDNAs to the poplar genome sequence combined with BLAST comparisons to previously predicted protein coding sequences in the poplar genome identified 39 FLcDNAs that likely localize to gaps in the current genome sequence assembly. Another 173 FLcDNAs mapped to the genome sequence but were not included among the previously predicted genes in the poplar genome. Comparative sequence analysis against Arabidopsis thaliana and other species in the non-redundant database of GenBank revealed that 11.5% of the poplar FLcDNAs display no significant sequence similarity to other plant proteins. By mapping the poplar FLcDNAs against transcriptome data previously obtained with a 15.5 K cDNA microarray, we identified 153 FLcDNA clones for genes that were

  18. Effects of flooding on leaf development, transpiration, and photosynthesis in narrowleaf cottonwood, a willow-like poplar.

    PubMed

    Rood, Stewart B; Nielsen, Julie L; Shenton, Leslee; Gill, Karen M; Letts, Matthew G

    2010-04-01

    The narrowleaf cottonwood, Populus angustifolia, occurs in occasionally flooded, low elevation zones along river valleys near the North American Rocky Mountains. This small poplar has narrow leaves and fine branching and thus resembles willows, which are commonly flood-tolerant. We investigated the flood response of narrowleaf cottonwoods and a related native hybrid, jackii cottonwood (P. x jackii = P. balsamifera x P. deltoides), by studying saplings of 24 clones in a greenhouse, with some pots being inundated to provide the flood treatment. Flooding slightly reduced leaf numbers (-10%), and leaf sizes were reduced by about 21% in female P. angustifolia versus a 50% reduction in the female hybrids. Flooding-reduced stomatal conductance and net photosynthetic rate, and reduced transpiration particularly in P. x jackii. The effects on foliar gas exchange declined over a 5-week interval, suggesting compensation. The moderate impact of flooding supports the hypothesis that narrowleaf cottonwoods are flood-tolerant, and we anticipate that these trees could provide traits to increase the flood tolerance of fast-growing hybrid poplars. The results further indicate that female cottonwoods may be more flood-tolerant than males, and females could be more successful in lower, flood-prone sites.

  19. Effects of flooding on leaf development, transpiration, and photosynthesis in narrowleaf cottonwood, a willow-like poplar.

    PubMed

    Rood, Stewart B; Nielsen, Julie L; Shenton, Leslee; Gill, Karen M; Letts, Matthew G

    2010-04-01

    The narrowleaf cottonwood, Populus angustifolia, occurs in occasionally flooded, low elevation zones along river valleys near the North American Rocky Mountains. This small poplar has narrow leaves and fine branching and thus resembles willows, which are commonly flood-tolerant. We investigated the flood response of narrowleaf cottonwoods and a related native hybrid, jackii cottonwood (P. x jackii = P. balsamifera x P. deltoides), by studying saplings of 24 clones in a greenhouse, with some pots being inundated to provide the flood treatment. Flooding slightly reduced leaf numbers (-10%), and leaf sizes were reduced by about 21% in female P. angustifolia versus a 50% reduction in the female hybrids. Flooding-reduced stomatal conductance and net photosynthetic rate, and reduced transpiration particularly in P. x jackii. The effects on foliar gas exchange declined over a 5-week interval, suggesting compensation. The moderate impact of flooding supports the hypothesis that narrowleaf cottonwoods are flood-tolerant, and we anticipate that these trees could provide traits to increase the flood tolerance of fast-growing hybrid poplars. The results further indicate that female cottonwoods may be more flood-tolerant than males, and females could be more successful in lower, flood-prone sites. PMID:20013353

  20. Bioenergy and resilience in the northern hardwood forest (Invited)

    NASA Astrophysics Data System (ADS)

    Groffman, P. M.

    2013-12-01

    Societal concerns about energy costs and security have led to new demands on forests to produce wood for energy. In northern hardwood forest ecosystems, harvesting disturbance sets in motion a series of interconnected ecosystem responses including increased runoff, increased sediment yield, acidification of soils, loss of nitrogen, phosphorus and base cations, and alteration of greenhouse gas and surface energy balances. It requires appreciable time for the ecosystem to recover from this disturbance and there is a critical need to determine if increased intensity of forest harvesting to provide wood energy reduces other ecosystem services provided by these forests. These concerns are especially acute in the northeastern U.S. which has experienced significant increases in temperature, marked increases in precipitation and significant depletion of base cations due to acid rain over the past 50 years. Long-term studies of forest response to harvesting and to calcium additions at the Hubbard Brook Experimental Forest (HBEF), New Hampshire provide a basis for evaluating resilience and recovery mechanisms in the face of increased harvest intensity for bioenergy. Response of soil processes to calcium additions suggest that acidification has reduced biological control of carbon and nitrogen cycling in these forests, increasing their susceptibility to nutrient losses and state change in response to increased harvest intensity.

  1. Denitrification in bottomland hardwood wetland soils of the Cache River

    USGS Publications Warehouse

    DeLaune, R.D.; Boar, R.R.; Lindau, C.W.; Kleiss, B.A.

    1996-01-01

    Denitrification rates were quantified in bottomland hardwood wetland soils of the Cache River. N15 labeled nitrate was added to columns containing wetland soils and river water. Over 40 days, nitrate-N in floodwater (approximately 9 mg N L-1) decreased by between 82% and 59%, which gave estimates of N export from the water column of between 11.5 mg N m-2 day-1 and 7.5 mg N m-2 day-1. These values correlated directly with organic content of surface sediment, which included forest litter. Added glucose doubled rates of nitrate loss in these soils, which indicated that the process was carbon limited. Nitrification occurring simultaneously with denitrification was determined using isotopic dilution techniques. Contributions of nitrate to water from nitrification were estimated at between 5% and 12% of the total nitrate reduced. Rates of nitrogen transformation in these forest soils were likely limited by available soil carbon from tree litter and perhaps canopy leachate, rather than by nitrate concentration in inflowing floodwater.

  2. Growing poplars for research with and without mycorrhizas.

    PubMed

    Müller, Anna; Volmer, Katharina; Mishra-Knyrim, Manika; Polle, Andrea

    2013-01-01

    During the last decades the importance of the genus Populus increased because the poplar genome has been sequenced and molecular tools for basic research have become available. Poplar species occur in different habitats and harbor large genetic variation, which can be exploited for economic applications and for increasing our knowledge on the basic molecular mechanisms of the woody life style. Poplars are, therefore, employed to unravel the molecular mechanisms of wood formation, stress tolerance, tree nutrition and interaction with other organisms such as pathogens or mycorrhiza. The basis of these investigations is the reproducible production of homogeneous plant material. In this method paper we describe techniques and growth conditions for the in vitro propagation of different poplar species (Populus × canescens, P. trichocarpa, P. tremula, and P. euphratica) and ectomycorrhizal fungi (Laccaria bicolor, Paxillus involutus) as well as for their co-cultivation for ectomycorrhizal synthesis. Maintenance and plant preparation require different multiplication and rooting media. Growth systems to cultivate poplars under axenic conditions in agar and sand cultures with and without mycorrhizal fungi are described. Transfer of the plants from in vitro to in situ conditions is critical and hardening is important to prevent high mortality. Growth and vitality of the trees in vitro and outdoors with and without ectomycorrhizas are reported.

  3. Growing poplars for research with and without mycorrhizas

    PubMed Central

    Müller, Anna; Volmer, Katharina; Mishra-Knyrim, Manika; Polle, Andrea

    2013-01-01

    During the last decades the importance of the genus Populus increased because the poplar genome has been sequenced and molecular tools for basic research have become available. Poplar species occur in different habitats and harbor large genetic variation, which can be exploited for economic applications and for increasing our knowledge on the basic molecular mechanisms of the woody life style. Poplars are, therefore, employed to unravel the molecular mechanisms of wood formation, stress tolerance, tree nutrition and interaction with other organisms such as pathogens or mycorrhiza. The basis of these investigations is the reproducible production of homogeneous plant material. In this method paper we describe techniques and growth conditions for the in vitro propagation of different poplar species (Populus × canescens, P. trichocarpa, P. tremula, and P. euphratica) and ectomycorrhizal fungi (Laccaria bicolor, Paxillus involutus) as well as for their co-cultivation for ectomycorrhizal synthesis. Maintenance and plant preparation require different multiplication and rooting media. Growth systems to cultivate poplars under axenic conditions in agar and sand cultures with and without mycorrhizal fungi are described. Transfer of the plants from in vitro to in situ conditions is critical and hardening is important to prevent high mortality. Growth and vitality of the trees in vitro and outdoors with and without ectomycorrhizas are reported. PMID:23986772

  4. Fungal community associated with genetically modified poplar during metal phytoremediation.

    PubMed

    Hur, Moonsuk; Lim, Young Woon; Yu, Jae Jeong; Cheon, Se Uk; Choi, Young Im; Yoon, Seok-Hwan; Park, Sang-Cheol; Kim, Dong-Il; Yi, Hana

    2012-12-01

    Due to the increasing demand for phytoremediation, many transgenic poplars have been developed to enhance the bioremediation of heavy metals. However, structural changes to indigenous fungal communities by genetically modified organisms (GMO) presents a major ecological issue, due to the important role of fungi for plant growth in natural environments. To evaluate the effect of GM plant use on environmental fungal soil communities, extensive sequencing-based community analysis was conducted, while controlling the influence of plant clonality, plant age, soil condition, and harvesting season. The rhizosphere soils of GM and wild type (WT) poplars at a range of growth stages were sampled together with unplanted, contaminated soil, and the fungal community structures were investigated by pyrosequencing the D1/D2 region of the 28S rRNA gene. The results show that the overall structure of the rhizosphere fungal community was not significantly influenced by GM poplars. However, the presence of GM specific taxa, and faster rate of community change during poplar growth, appeared to be characteristic of the GM plant-induced effects on soil-born fungal communities. The results of this study provide additional information about the potential effects of GM poplar trees aged 1.5-3 years, on the soil fungal community.

  5. Decreased transpiration in poplar trees exposed to 2,4,6-trinitrotoluene

    SciTech Connect

    Thompson, P.L.; Ramer, L.A.; Guffey, A.P.; Schnoor, J.L.

    1998-01-01

    The improper handling of the toxic compound 2,4,6-trinitrotoluene (TNT) has led to the contamination of soil and groundwater, and the uptake of TNT by a variety of plants has been established. This article discusses the effects of various concentrations of the explosive 2,4,6-trinitrotoluene (TNT) on the transpiration of hybrid poplar trees growing in hydroponic media. Transpiration was measured daily by gravimetric means. The rapid removal of TNT from hydroponic solutions was a result of plant uptake and required a daily dosage of TNT to ensure a relatively constant exposure over time. Transpiration decreased with increasing TNT concentrations {ge}5 mg/L. Decreases in transpiration were accompanied by leaf chlorosis and abscission. A comparison between a laboratory study and a pilot-scale experiment showed good scale-up potential.

  6. Insect regurgitant and wounding elicit similar defense responses in poplar leaves: not something to spit at?

    PubMed

    Major, Ian T; Constabel, C Peter

    2007-01-01

    How plants perceive insect attacks is an area of active research. Numerous studies have shown that regurgitant from feeding insects elicits a defense response in plants, which is often assumed to be distinct from a wound response. We have characterized the inducible defense response in hybrid poplar and found it to be qualitatively similar between wounding and application of regurgitant from forest tent caterpillar. We suggest that this is likely attributable to our wounding treatment which is much more intense compared to most other studies. These overlapping responses appear to be activated via jasmonic acid signaling, and we speculate that they are both triggered by elicitors of plant origin. Wounding would release such elicitor molecules when leaf cells are disrupted, and regurgitant may contain them in a modified or processed form. This hypothesis could explain why some other necrosis-inducing stresses also induce herbivore defense genes.

  7. Proteomics of nitrogen remobilization in poplar bark.

    PubMed

    Islam, Nazrul; Li, Gen; Garrett, Wesley M; Lin, Rongshuang; Sriram, Ganesh; Cooper, Bret; Coleman, Gary D

    2015-02-01

    Seasonal nitrogen (N) cycling in temperate deciduous trees involves the accumulation of bark storage proteins (BSPs) in phloem parenchyma and xylem ray cells. BSPs are anabolized using recycled N during autumn leaf senescence and later become a source of N during spring shoot growth as they are catabolized. Little is known about the catabolic processes involved in remobilization and reutilization of N from BSPs in trees. In this study, we used multidimensional protein identification technology (MudPIT) and spectral counting to identify protein changes that occur in the bark during BSP catabolism. A total of 4,178 proteins were identified from bark prior to and during BSP catabolism. The majority (62%) of the proteins were found during BSP catabolism, indicating extensive remodeling of the proteome during renewed shoot growth and N remobilization. Among these proteins were 30 proteases, the relative abundances of which increased during BSP catabolism. These proteases spanned a range of families including members of the papain-like cysteine proteases, serine carboxypeptidases, and aspartyl proteases. These data identify, for the first time, candidate proteases that could potentially provide hydrolase activity required for N remobilization from BSPs and provide the foundation for research to advance our knowledge of poplar N cycling.

  8. Proteome Analysis of Poplar Seed Vigor

    PubMed Central

    Zhang, Hong; Wang, Wei-Qing; Liu, Shu-Jun; Møller, Ian Max; Song, Song-Quan

    2015-01-01

    Seed vigor is a complex property that determines the seed’s potential for rapid uniform emergence and subsequent growth. However, the mechanism for change in seed vigor is poorly understood. The seeds of poplar (Populus × Canadensis Moench), which are short-lived, were stored at 30°C and 75±5% relative humidity for different periods of time (0–90 days) to obtain different vigor seeds (from 95 to 0% germination). With decreasing seed vigor, the temperature range of seed germination became narrower; the respiration rate of the seeds decreased markedly, while the relative electrolyte leakage increased markedly, both levelling off after 45 days. A total of 81 protein spots showed a significant change in abundance (≥ 1.5-fold, P < 0.05) when comparing the proteomes among seeds with different vigor. Of the identified 65 proteins, most belonged to the groups involved in metabolism (23%), protein synthesis and destination (22%), energy (18%), cell defense and rescue (17%), and storage protein (15%). These proteins accounted for 95% of all the identified proteins. During seed aging, 53 and 6 identified proteins consistently increased and decreased in abundance, respectively, and they were associated with metabolism (22%), protein synthesis and destination (22%), energy (19%), cell defense and rescue (19%), storage proteins (15%), and cell growth and structure (3%). These data show that the decrease in seed vigor (aging) is an energy-dependent process, which requires protein synthesis and degradation as well as cellular defense and rescue. PMID:26172265

  9. Genomic insights into salt adaptation in a desert poplar

    SciTech Connect

    Ma, Tao; Wang, Junyi; Zhou, Gongke; Yue, Zhen; Hu, Quanjun; Chen, Yan; Liu, Bingbing; Qiu, Qiang; Wang, Zhuo; Zhang, Jian; Wang, Kun; Jaing, Dechun; Gou, Caiyun; Yu, Lili; Zhan, Dongliang; Zhou, Ran; Luo, Wenchun; Ma, Hui; Yang, Yongzhi; Pan, Shengkai; Fang, Dongming; Luo, Yadan; Wang, Xia; Wang, Gaini; Wang, Juan; Wang, Qian; Lu, Xu; Chen, Zhe; Liu, Jinchao; Lu, Yao; Yin, Ye; Yang, Huanming; Abbott, Richard; Wu, Yuxia; Wan, Dongshi; Li, Jia; Yin, Tongming; Yin, Tongming; Lascoux, Martin; DiFazio, Steven P; Tuskan, Gerald A; Wang, Jun; Jianquan, Liu

    2013-01-01

    Despite the high economic and ecological importance of forests, our knowledge of the genomic evolution of trees under salt stress remains very limited. Here we report the genome sequence of the desert poplar, Populus euphratica, which exhibits high tolerance to sa lt stress. Its genome is very similar and collinear to that of the closely related mesophytic congener, P trichocarpa. However, we find that several gene families likely to be involved in tolerance to salt stress contain significantly more gene copies within the P euphratica lineage. Furthermore, genes showing evidence of positive selection are significantly enriched in functional categories related to salt stress. Some of these genes, and others within the same categories, are significantly upregulated under salt stress relative to their expression in another salt-sensitive poplar. Our results provide an important background for understanding tree adaptation to salt stress and facilitating the genetic improvement of cultivated poplars for saline soils.

  10. Hydrothermal pretreatment conditions to enhance ethanol production from poplar biomass.

    PubMed

    Negro, Maria José; Manzanares, Paloma; Ballesteros, Ignacio; Oliva, Jose Miguel; Cabañas, Araceli; Ballesteros, Mercedes

    2003-01-01

    Pretreatment has been recognized as a key step in enzyme-based conversion processes of lignocellulose biomass to ethanol. The aim of this study is to evaluate two hydrothermal pretreatments (steam explosion and liquid hot water) to enhance ethanol production from poplar (Populus nigra) biomass by a simultaneous saccharification and fermentation (SSF) process. The composition of liquid and solid fractions obtained after pretreatment, enzymatic digestibility, and ethanol production of poplar biomass pretreated at different experimental conditions was analyzed. The best results were obtained in steam explosion pretreatment at 210 C and 4 min, taking into account cellulose recovery above 95%, enzymatic hydrolysis yield of about 60%, SSF yield of 60% of theoretical, and 41% xylose recovery in the liquid fraction. Large particles can be used for poplar biomass in both pretreatments, since no significant effect of particle size on enzymatic hydrolysis and SSF was obtained.

  11. Synopsis of wetland functions and values: bottomland hardwoods with special emphasis on eastern Texas and Oklahoma

    USGS Publications Warehouse

    Wilkinson, D.L.; Schneller-McDonald, K.; Olson, R.W.; Auble, G.T.

    1987-01-01

    Bottomland hardwood wetlands are the natural cover type of many floodplain ecosystems in the southeastern United States. They are dynamic, productive systems that depend on intermittent flooding and moving water for maintenance of structure and function. Many of the diverse functions performed by bottomland hardwoods (e.g., flood control, sediment trapping, fish and wildlife habitat) are directly or indirectly valued by humans. Balanced decisions regarding bottomland hardwoods are often hindered by a limited ability to accurately specify the functions being performed by these systems and, furthermore, by an inability to evaluate these functions in economic terms. This report addresses these informational needs. It focuses on the bottomland hardwoods of eastern Texas and Oklahoma, serving as an introduction and entry to the literature. It is not intended to serve as a substitute for reference to the original literature. The first section of the report is a review of the major functions of bottomland hardwoods, grouped under the headings of hydrology, water quality, productivity, detritus, nutrients, and habitat. Although the hydrology of these areas is diverse and complex, especially with respect to groundwater, water storage at high flows can clearly function to attenuate peak flows, with possible reductions in downstream flooding damage. Water moving through a bottomland hardwood system carries with it various organic and inorganic constituents, including sediment, organic matter, nutrients, and pollutants. When waterborne materials are introduced to bottomland hardwoods (from river flooding or upland runoff), they may be retained, transformed, or transported. As a result, water quality may be significantly altered and improved. The fluctuating and flowing water regime of bottomland hardwoods is associated with generally high net primary productivity and rapid fluxes of organic matter and nutrients. These, in turn, support secondary productivity in the bottomland

  12. Effect of different biochars on Nitrogen uptake in poplar trees

    NASA Astrophysics Data System (ADS)

    George, Elizabeth; Tonon, Giustino; Scandellari, Francesca

    2014-05-01

    Influence of biochar on soil nitrogen transformation and plant uptake has been reported. This paper presents preliminary results of plant N uptake in poplars by using 15N isotope tracer approach Two types of biochar were applied to two sets of pots containing only sand and each pot received a pre-rooted poplar cutting. Half of the pots were inoculated with commercial mycorrhizal gel and the other half were left without. It is intended to provide information on how biochar, mycorrhiza and root interaction mediate nitrogen uptake and organ allocation.

  13. Effects of young poplar plantations on understory plant diversity in the Dongting Lake wetlands, China.

    PubMed

    Li, Youzhi; Chen, Xinsheng; Xie, Yonghong; Li, Xu; Li, Feng; Hou, Zhiyong

    2014-09-11

    This study evaluated the effects of young poplar plantations on understory plant diversity in the Dongting Lake wetlands, China. Poplar plantations resulted in a higher species number and Shannon's diversity. Species compositions were different between areas with poplar and reed populations: a lower ratio of hygrophytes but a higher ratio of mesophytes, and a higher ratio of heliophytes but a lower ratio of neutrophilous or shade plants in poplar areas compared to reed areas. Poplar plantations supported a higher ratio of ligneous plants in the entire Dongting Lake area, but there was no difference in the monitored plots. Unlike reedy areas, poplar plantations had higher light availability but lower soil water content during the growing seasons. These data suggest that young poplar plantations generally increased species richness and plant diversity, but significantly changed species composition due to the reduced soil water and increased light availability.

  14. Hardwoods for Woody Energy Crops in the Southeast United States:Two Centuries of Practitioner Experience

    SciTech Connect

    Kline, Keith L; Coleman, Mark

    2010-01-01

    This paper summarizes opinions from forest industry experts on the potential for hardwood tree species to serve as feedstock for bioenergy in the Southeast United States. Hardwoods are of interest for bioenergy because of desirable physical qualities, genetic research advances, and growth potential. Experts observe that high productivity rates in southeastern plantations are confined to limited site conditions or require costly inputs. Eastern cottonwood and American sycamore grow quickly on rich bottomlands where they compete with higher-value crops. These species are also prone to pests and disease. Sweetgum is frost hardy, has few pest or disease problems, and grows across a broad range of sites, yet growth rates are relatively low. Eucalypts require few inputs and offer high potential productivity, but are limited by frost to the lower coastal plain and Florida. More time and investment in silviculture, selection, and breeding will be needed to develop hardwoods as competitive biofuel feedstock species. Loblolly pine has robust site requirements, growth rates rivaling hardwoods and lower costs of production. Because of existing stands and know-how, the forestry community considers loblolly pine to be a prime candidate for plantation bioenergy in the Southeast. Further research is required to study naturally regenerated hardwood biomass resources.

  15. Sediment retention in a bottomland hardwood wetland in Eastern Arkansas

    USGS Publications Warehouse

    Kleiss, B.A.

    1996-01-01

    One of the often-stated functions of wetlands is their ability to remove sediments and other particulates from water, thus improving water quality in the adjacent aquatic system. However, actual rates of suspended sediment removal have rarely been measured in freshwater wetland systems. To address this issue, suspended sediment dynamics were measured in a 85-km2 bottomland hardwood (BLH) wetland adjacent to the highly turbid Cache River in eastern Arkansas during the 1988-1990 water years. A suspended sediment mass balance was calculated using depth-integrated, flow-weighted daily measurements at wetland inflow and outflow points. Over the three-year period, suspended sediment load decreased an average of 14% between upstream and downstream sampling points. To test the idea that the suspended sediments were retained by the adjacent wetland and to determine what portion of the BLH forest was most responsible for retaining the suspended sediments, concurrent measurements of sediment accretion were made at 30 sites in the wetland using feldspar clay marker horizons, sedimentation disks, the 137cesium method, and dendrogeomorphic techniques. Sedimentation rates exceeding 1 cm/yr were measured in frequently flooded areas dominated by Nyssa aquatica and Taxodium distichum. Maximum sedimentation rates did not occur on the natural levee, as would be predicted by classical fluvial geomorphology, but in the "first bottom," where retention time of the water reached a maximum. Multiple regression was used to relate sedimentation rates with several physical and biological factors. A combination of distance from the river, flood duration, and tree basal area accounted for nearly 90% of the variation in sedimentation rates.

  16. Uneven-aged management of pine and pine-hardwood mixtures in the Ouachita mountains

    SciTech Connect

    Shelton, M.G.; Baker, J.B.

    1992-01-01

    The Ouachita National Forest and the Southern Forest Experiment Station launched a long-term research project in 1988 to study uneven-aged management of shortleaf pine and pine-hardwood mixtures in the Ouachita Mountains. The successful use of uneven-aged management in the southern pines has to date been limited to pure stands. However, the maintenance of a hardwood component is desirable to enhance biological diversity, wildlife habitat, and aesthetics. The study's goals are: (1) to determine the levels at which pine and hardwoods are biologically compatible in uneven-aged stands, and (2) to evaluate the timber, wildlife, water quality, aesthetics and biodiversity associated with each management alternative so that sound decisions concerning the tradeoffs among these resources can be determined.

  17. Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera).

    PubMed

    Olson, Matthew S; Robertson, Amanda L; Takebayashi, Naoki; Silim, Salim; Schroeder, William R; Tiffin, Peter

    2010-04-01

    *Current perceptions that poplars have high levels of nucleotide variation, large effective population sizes, and rapid decay of linkage disequilibrium are based primarily on studies from one poplar species, Populus tremula. *We analysed 590 gene fragments (average length 565 bp) from each of 15 individuals from different populations from throughout the range of Populus balsamifera. *Nucleotide diversity (theta(total) = 0.0028, pi = 0.0027) was low compared with other trees and model agricultural systems. Patterns of nucleotide diversity and site frequency spectra were consistent with purifying selection on replacement and intron sites. When averaged across all loci we found no evidence for decay of linkage disequilibrium across 750 bp, consistent with the low estimates of the scaled recombination parameter, rho = 0.0092. *Compared with P. tremula, a well studied congener with a similar distribution, P. balsamifera has low diversity and low effective recombination, both of which indicate a lower effective population size in P. balsamifera. Patterns of diversity and linkage indicate that there is considerable variation in population genomic patterns among poplar species and unlike P. tremula, association mapping techniques in balsam poplar should consider sampling single nucleotide polymorphisms (SNPs) at well-spaced intervals.

  18. Wood reinforcement of poplar by rice NAC transcription factor

    PubMed Central

    Sakamoto, Shingo; Takata, Naoki; Oshima, Yoshimi; Yoshida, Kouki; Taniguchi, Toru; Mitsuda, Nobutaka

    2016-01-01

    Lignocellulose, composed of cellulose, hemicellulose, and lignin, in the secondary cell wall constitutes wood and is the most abundant form of biomass on Earth. Enhancement of wood accumulation may be an effective strategy to increase biomass as well as wood strength, but currently only limited research has been undertaken. Here, we demonstrated that OsSWN1, the orthologue of the rice NAC Secondary-wall Thickening factor (NST) transcription factor, effectively enhanced secondary cell wall formation in the Arabidopsis inflorescence stem and poplar (Populus tremula×Populus tremuloides) stem when expressed by the Arabidopsis NST3 promoter. Interestingly, in transgenic Arabidopsis and poplar, ectopic secondary cell wall deposition in the pith area was observed in addition to densification of the secondary cell wall in fiber cells. The cell wall content or density of the stem increased on average by up to 38% and 39% in Arabidopsis and poplar, respectively, without causing growth inhibition. As a result, physical strength of the stem increased by up to 57% in poplar. Collectively, these data suggest that the reinforcement of wood by NST3pro:OsSWN1 is a promising strategy to enhance wood-biomass production in dicotyledonous plant species. PMID:26812961

  19. Turbulent Wind Temperature and Pressure in a Mature Hardwood Canopy.

    NASA Astrophysics Data System (ADS)

    Conklin, Paul Sheldon

    An understanding of the mechanisms controlling turbulent exchange in plant canopies is necessary for a variety of ecological, meteorological and agricultural problems. Previous studies have shown that most of the exchange is caused by intermittent, coherent, turbulence structures. This study describes these structures in a mature hardwood forest, with special attention to the role of static pressure fluctuations within and above the canopy. The study was conducted from an instrument tower in a 31 m tall forest in the piedmont region of North Carolina, USA. Measurements were made at two levels: above the forest at 1.2 times the canopy height (h), and either just below the forest canopy at 0.6 h or in the middle of the lower third of the canopy at 0.7 h. A static pressure probe consisting of two parallel, flat disks was fabricated and tested in a wind tunnel. Each measurement level included the pressure probe (p), a sonic anemometer (u v w) and a fine wire thermocouple (T). A third pressure probe was installed at the surface. Measurements from all instruments were made at five Hz and block averaged to one Hz for analysis. 22 hrs of data were analyzed. Integral time scales were calculated for each of the above variables. The relative duration of coherent signals was p > T = u > w. Lagged correlations between the measurements made above and below the canopy show that the variables were well correlated between the levels, with the order of correlation being p > w > T = u. p and w measurements were synchronous at all measurement heights, while T below the canopy lagged T above, and u showed both lags and leads. The segments of the data showing turbulent structures were ensemble averaged for a variety of atmospheric stability conditions. These averages show that a vertically synchronous pressure pulse accompanies each turbulent structure. Two flow regimes are demonstrated for u, one driven by advected momentum and one driven by pressure gradients. Vertical velocity

  20. Isotopic signals of denitrification in a northern hardwood forested catchment

    NASA Astrophysics Data System (ADS)

    Wexler, Sarah; Goodale, Christine

    2013-04-01

    significance and spatial variability of denitrification in environments with low levels of nitrate, represented by this northern hardwood forested catchment.

  1. Topographic Distribution of Soil Respiration in Northern Hardwood Forests

    NASA Astrophysics Data System (ADS)

    Beall, F. D.; Bourbonniere, R. A.; Creed, I. F.

    2004-05-01

    Soil respiration is an important source of CO2 to the atmosphere and fluxes from complex terrains like those found in northern hardwood forests are not well documented. Our initial hypothesis was that the wetlands (swamps) at the bottom of such catchments would exhibit consistently less CO2 efflux than the upland components. To test this hypothesis we laid out transects along topographic gradients in each of two catchments at the Turkey Lakes Watershed near Sault Ste. Marie Ontario. Soil respiration was determined by the static non-steady state chamber method using an infrared gas analyser in the summer and fall of 2002 and spring to fall of 2003. Measurements of soil temperature, moisture and soil solution DOC concentrations were collected coincidentally with CO2 efflux measurements. Results indicate that a transition zone exists at the lower portions of the slopes in these high relief catchments that is characterized by higher CO2 efflux than the wetland or upland sites along the transects. The differences in CO2 efflux are greatest in mid summer, e.g. August 2003 mean values were 9, 7 and 3 micromoles CO2 m-2 sec-1 for the transition, upland and wetland zones respectively. Several topographic features (depressions, shelves, convergent and divergent foot slopes) populate the transition zone but collar placement did not specifically target them. Therefore statistical analysis was done on the three-position model defining the transition zone as simply the lower portion of the slope. On an annual basis the transition zone showed significantly greater effluxes of CO2 than either of the other two zones (P <0.005). Different topographic positions also exhibited differences in the relationships between CO2 efflux and soil temperature, soil moisture and soil solution DOC concentrations. This study shows that soil respiration can not be generalized without taking topographic position into consideration. Classification of catchments simply into "wetland" and "upland

  2. Sulfate Metabolites of 4-Monochlorobiphenyl in Whole Poplar Plants

    PubMed Central

    Zhai, Guangshu; Lehmler, Hans-Joachim; Schnoor, Jerald L.

    2013-01-01

    4-Monochlorobiphenyl (PCB3) has been proven to be transformed into hydroxylated metabolites of PCB3 (OH-PCB3s) in whole poplar plants in our previous work. However, hydroxylated metabolites of PCBs, including OH-PCB3s, as the substrates of sulfotransferases have not been studied in many organisms including plants in vivo. Poplar (Populus deltoides × nigra, DN34) was used to investigate the further metabolism from OH-PCB3s to PCB3 sulfates because it is a model plant and one that is frequently utilized in phytoremediation. Results showed poplar plants could metabolize PCB3 into PCB3 sulfates during 25 day exposures. Three sulfate metabolites, including 2′-PCB3 sulfate, 3′-PCB3 sulfate and 4′-PCB3 sulfate, were identified in poplar roots and their concentrations increased in the roots from day 10 to day 25. The major products were 2′-PCB3 sulfate and 4′-PCB3 sulfate. However, the concentrations of PCB3 sulfates were much lower than those of OH-PCB3s in the roots, suggesting the sequential transformation of these hydroxylated PCB3 metabolites into PCB3 sulfates in whole poplars. In addition, 2′-PCB3 sulfate or 4′-PCB3 sulfate was also found in the bottom wood samples indicating some translocation or metabolism in woody tissue. Results suggested that OH-PCB3s were the substrates of sulfotransferases which catalyzed the formation of PCB3 sulfates in the metabolic pathway of PCB3. PMID:23215248

  3. Isoprene emission-free poplars--a chance to reduce the impact from poplar plantations on the atmosphere.

    PubMed

    Behnke, Katja; Grote, Rüdiger; Brüggemann, Nicolas; Zimmer, Ina; Zhou, Guanwu; Elobeid, Mudawi; Janz, Dennis; Polle, Andrea; Schnitzler, Jörg-Peter

    2012-04-01

    • Depending on the atmospheric composition, isoprene emissions from plants can have a severe impact on air quality and regional climate. For the plant itself, isoprene can enhance stress tolerance and also interfere with the attraction of herbivores and parasitoids. • Here, we tested the growth performance and fitness of Populus × canescens in which isoprene emission had been knocked down by RNA interference technology (PcISPS-RNAi plants) for two growing seasons under outdoor conditions. • Neither the growth nor biomass yield of the PcISPS-RNAi poplars was impaired, and they were even temporarily enhanced compared with control poplars. Modelling of the annual carbon balances revealed a reduced carbon loss of 2.2% of the total gross primary production by the absence of isoprene emission, and a 6.9% enhanced net growth of PcISPS-RNAi poplars. However, the knock down in isoprene emission resulted in reduced susceptibility to fungal infection, whereas the attractiveness for herbivores was enhanced. • The present study promises potential for the use of non- or low-isoprene-emitting poplars for more sustainable and environmentally friendly biomass production, as reducing isoprene emission will presumably have positive effects on regional climate and air quality.

  4. Comparative water use by maize, perennial crops, restored prairie, and poplar trees in the US Midwest

    NASA Astrophysics Data System (ADS)

    Hamilton, S. K.; Hussain, M. Z.; Bhardwaj, A. K.; Basso, B.; Robertson, G. P.

    2015-06-01

    Water use by plant communities across years of varying water availability indicates how terrestrial water balances will respond to climate change and variability as well as to land cover change. Perennial biofuel crops, likely grown mainly on marginal lands of limited water availability, provide an example of a potentially extensive future land cover conversion. We measured growing-season evapotranspiration (ET) based on daily changes in soil profile water contents in five perennial systems—switchgrass, miscanthus, native grasses, restored prairie, and hybrid poplar—and in annual maize (corn) in a temperate humid climate (Michigan, USA). Three study years (2010, 2011 and 2013) had normal growing-season rainfall (480-610 mm) whereas 2012 was a drought year (210 mm). Over all four years, mean (±SEM) growing-season ET for perennial systems did not greatly differ from corn (496 ± 21 mm), averaging 559 (±14), 458 (±31), 573 (±37), 519 (±30), and 492 (±58) mm for switchgrass, miscanthus, native grasses, prairie, and poplar, respectively. Differences in biomass production largely determined variation in water use efficiency (WUE). Miscanthus had the highest WUE in both normal and drought years (52-67 and 43 kg dry biomass ha-1 mm-1, respectively), followed by maize (40-59 and 29 kg ha-1 mm-1) the native grasses and prairie were lower and poplar was intermediate. That measured water use by perennial systems was similar to maize across normal and drought years contrasts with earlier modeling studies and suggests that rain-fed perennial biomass crops in this climate have little impact on landscape water balances, whether replacing rain-fed maize on arable lands or successional vegetation on marginal lands. Results also suggest that crop ET rates, and thus groundwater recharge, streamflow, and lake levels, may be less sensitive to climate change than has been assumed.

  5. EVALUATION OF COMPONENTS FOR HARDWOOD SILVOPASTORES FOR COW-CALF OPERATORS IN THE SOUTHEASTERN UNITED STATES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Silvopasture systems consisting of bahiagrass (Paspalum notatum) and pines (Pinus spp.) are common in the southeastern United States. However, some producers prefer other forages to bahiagrass and there are increasing opportunities for marketing hardwoods in the region. Warm season forages and hardw...

  6. Hardwood snag fragmentation in a pine-oak forest of southeastern Arkansas

    SciTech Connect

    Cain, M.D.

    1996-12-31

    Because snags are importnat for forest wildlife as breeding, roosting and foraging sites, resource managers who wish to maintain this component in forest stands need to be aware of snag fragmentation rates. Measurements were taken in uneven-aged pine-hardwood standards in southeastern Arkansas to determine fragmentation rates for hardwood snags 2 to 6 yr after stem injection with herbicides. Crown and bole condition of snags were also assessed. Pinus eschinata Mill. and P. taeda L. were the dominant overstory components and were udisturbed. Quercus spp. accounted for 91% of hardwoods greater than 25 cm dbh. Since small diameter snags deteriorated first, snag diameter distributions changed from uneven-sized to even-sized structure as time since mortality increased. Within 3 yr of injection, 57% of snag boles had broken below crown height. Number of wildlife cavities per snag increased with time since mortality. At 6 yr after injection, 44% of residual snags had evidence of wildlife cavities. Less than 50% of hardwoods less then 25 cm dbh were still standing 5 yr after herbicide injection.

  7. Tree-section harvesting of northern hardwood thinnings. Forest Service research paper

    SciTech Connect

    Mattson, J.A.

    1993-01-01

    The report describes the results of a field trial of tree-section harvesting, a shortwood version of whole-tree harvesting, in a northern hardwood thinning. This technique is technically feasible and especially useful where the appearance of the residual stand is a primary concern.

  8. 77 FR 66436 - Hardwood and Decorative Plywood From the People's Republic of China: Initiation of Antidumping...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-05

    ... From the People's Republic of China: Initiation of Antidumping Duty Investigation, 77 FR 65172 (October.... Appendix I--Scope of the Investigation Hardwood and decorative plywood is a panel composed of an assembly of two or more layers or plies of wood veneer(s) in combination with a core. The several...

  9. Genome Enabled Discovery of Carbon Sequestration Genes in Poplar

    SciTech Connect

    Filichkin, Sergei; Etherington, Elizabeth; Ma, Caiping; Strauss, Steve

    2007-02-22

    The goals of the S.H. Strauss laboratory portion of 'Genome-enabled discovery of carbon sequestration genes in poplar' are (1) to explore the functions of candidate genes using Populus transformation by inserting genes provided by Oakridge National Laboratory (ORNL) and the University of Florida (UF) into poplar; (2) to expand the poplar transformation toolkit by developing transformation methods for important genotypes; and (3) to allow induced expression, and efficient gene suppression, in roots and other tissues. As part of the transformation improvement effort, OSU developed transformation protocols for Populus trichocarpa 'Nisqually-1' clone and an early flowering P. alba clone, 6K10. Complete descriptions of the transformation systems were published (Ma et. al. 2004, Meilan et. al 2004). Twenty-one 'Nisqually-1' and 622 6K10 transgenic plants were generated. To identify root predominant promoters, a set of three promoters were tested for their tissue-specific expression patterns in poplar and in Arabidopsis as a model system. A novel gene, ET304, was identified by analyzing a collection of poplar enhancer trap lines generated at OSU (Filichkin et. al 2006a, 2006b). Other promoters include the pGgMT1 root-predominant promoter from Casuarina glauca and the pAtPIN2 promoter from Arabidopsis root specific PIN2 gene. OSU tested two induction systems, alcohol- and estrogen-inducible, in multiple poplar transgenics. Ethanol proved to be the more efficient when tested in tissue culture and greenhouse conditions. Two estrogen-inducible systems were evaluated in transgenic Populus, neither of which functioned reliably in tissue culture conditions. GATEWAY-compatible plant binary vectors were designed to compare the silencing efficiency of homologous (direct) RNAi vs. heterologous (transitive) RNAi inverted repeats. A set of genes was targeted for post transcriptional silencing in the model Arabidopsis system; these include the floral meristem identity gene (APETALA1 or

  10. Impact of Biofuel Poplar Cultivation on Ground-Level Ozone and Premature Human Mortality Depends on Cultivar Selection and Planting Location.

    PubMed

    Ashworth, Kirsti; Wild, Oliver; Eller, Allyson S D; Hewitt, C Nick

    2015-07-21

    Isoprene and other volatile organic compounds emitted from vegetation play a key role in governing the formation of ground-level ozone. Emission rates of such compounds depend critically on the plant species. The cultivation of biofuel feedstocks will contribute to future land use change, altering the distribution of plant species and hence the magnitude and distribution of emissions. Here we use relationships between biomass yield and isoprene emissions derived from experimental data for 29 commercially available poplar hybrids to assess the impact that the large-scale cultivation of poplar for use as a biofuel feedstock will have on air quality, specifically ground-level ozone concentrations, in Europe. We show that the increases in ground-level ozone across Europe will increase the number of premature deaths attributable to ozone pollution each year by up to 6%. Substantial crop losses (up to ∼9 Mt y(-1) of wheat and maize) are also projected. We further demonstrate that these impacts are strongly dependent on the location of the poplar plantations, due to the prevailing meteorology, the population density, and the dominant crop type of the region. Our findings indicate the need for a concerted and centralized decision-making process that considers all aspects of future land use change in Europe, and not just the effect on greenhouse gas emissions.

  11. Impact of Biofuel Poplar Cultivation on Ground-Level Ozone and Premature Human Mortality Depends on Cultivar Selection and Planting Location.

    PubMed

    Ashworth, Kirsti; Wild, Oliver; Eller, Allyson S D; Hewitt, C Nick

    2015-07-21

    Isoprene and other volatile organic compounds emitted from vegetation play a key role in governing the formation of ground-level ozone. Emission rates of such compounds depend critically on the plant species. The cultivation of biofuel feedstocks will contribute to future land use change, altering the distribution of plant species and hence the magnitude and distribution of emissions. Here we use relationships between biomass yield and isoprene emissions derived from experimental data for 29 commercially available poplar hybrids to assess the impact that the large-scale cultivation of poplar for use as a biofuel feedstock will have on air quality, specifically ground-level ozone concentrations, in Europe. We show that the increases in ground-level ozone across Europe will increase the number of premature deaths attributable to ozone pollution each year by up to 6%. Substantial crop losses (up to ∼9 Mt y(-1) of wheat and maize) are also projected. We further demonstrate that these impacts are strongly dependent on the location of the poplar plantations, due to the prevailing meteorology, the population density, and the dominant crop type of the region. Our findings indicate the need for a concerted and centralized decision-making process that considers all aspects of future land use change in Europe, and not just the effect on greenhouse gas emissions. PMID:26098452

  12. Winter chemical defense of Alaskan balsam poplar against snowshoe hares.

    PubMed

    Reichardt, P B; Bryant, J P; Mattes, B R; Clausen, T P; Chapin, F S; Meyer, M

    1990-06-01

    Palatabilities of parts and growth stages of balsam poplar (Populus balsamifera) to snowshoe hares (Lepus americanus) are related to concentrations of specific plant metabolites that act as antifeedants. Buds are defended from hares by cineol, benzyl alcohol, and (+)-α-bisabolol. Internodes are defended by 6-hydroxycylohexenone (6-HCH) and salicaldehyde. Although defense of interaodes depends upon both compounds, the defense of juvenile internodes is principally related to salicaldehyde concentration; the defense of internode current annual growth is principally related to 6-HCH concentration. The concentration of 6-HCH can be supplemented by the hydrolysis of phenol glycosides when plant tissue is disrupted, raising the possibility of a dynamic element of the chemical defense of poplar.

  13. Nitrogen ion utilization by tulip poplar (Liriodendron tulipifera L. ) seedlings

    SciTech Connect

    Mann, L.K.

    1982-01-01

    Growth responses of one-year-old tulip poplar seedlings were determined for different nitrogen sources (HN/sub 4/NO/sub 3/, NH+/sub 4/, NO-/sub 3/, no nitrogen) at 336 ppm N in nutrient culture. At the end of three months, there were no significant differences in growth observed among treatments in terms of stem elongation, leaf area, and leaf size. After four months, however, seedlings of the NH/sub 4/NO/sub 3/ treatment exhibited significantly (P<0.05) greater growth (final weight gain and stem elongation) than all other nitrogen sorces. Growth was slightly less for the NO-/sub 3/ treatment plants, but compared with NH+/sub 4/ and no nitrogen treatment, both NH/sub 4/NO/sub 3/ and NO-/sub 3/ treatments exhibited significantly greater growth responses. NO-/sub 3/ is recommended as the sole nitrogen source, especially for small seedlings of tulip poplar.

  14. Inhibition of forage seed germination by leaf litter extracts of overstory hardwoods used in silvopastoral systems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Silvopastoral management strategies seek to expand spatial and temporal boundaries of forage production and promote ecosystem integrity through a combination of tree thinning and understory pastures. We determined the effects of water extracts of leaf litter from yellow poplar, Liriodendron tulipife...

  15. Barcoding Poplars (Populus L.) from Western China

    PubMed Central

    Shang, Huiying; Dong, Miao; Wang, Gaini; He, Xinyu; Zhao, Changming; Mao, Kangshan

    2013-01-01

    Background Populus is an ecologically and economically important genus of trees, but distinguishing between wild species is relatively difficult due to extensive interspecific hybridization and introgression, and the high level of intraspecific morphological variation. The DNA barcoding approach is a potential solution to this problem. Methodology/Principal Findings Here, we tested the discrimination power of five chloroplast barcodes and one nuclear barcode (ITS) among 95 trees that represent 21 Populus species from western China. Among all single barcode candidates, the discrimination power is highest for the nuclear ITS, progressively lower for chloroplast barcodes matK (M), trnG-psbK (G) and psbK-psbI (P), and trnH-psbA (H) and rbcL (R); the discrimination efficiency of the nuclear ITS (I) is also higher than any two-, three-, or even the five-locus combination of chloroplast barcodes. Among the five combinations of a single chloroplast barcode plus the nuclear ITS, H+I and P+I differentiated the highest and lowest portion of species, respectively. The highest discrimination rate for the barcodes or barcode combinations examined here is 55.0% (H+I), and usually discrimination failures occurred among species from sympatric or parapatric areas. Conclusions/Significance In this case study, we showed that when discriminating Populus species from western China, the nuclear ITS region represents a more promising barcode than any maternally inherited chloroplast region or combination of chloroplast regions. Meanwhile, combining the ITS region with chloroplast regions may improve the barcoding success rate and assist in detecting recent interspecific hybridizations. Failure to discriminate among several groups of Populus species from sympatric or parapatric areas may have been the result of incomplete lineage sorting, frequent interspecific hybridizations and introgressions. We agree with a previous proposal for constructing a tiered barcoding system in plants

  16. Heat transfer mechanisms in poplar wood undergoing torrefaction

    NASA Astrophysics Data System (ADS)

    Sule, Idris O.; Mahmud, Shohel; Dutta, Animesh; Tasnim, Syeda Humaira

    2016-03-01

    Torrefaction, a thermal treatment process of biomass, has been proved to improve biomass combustible properties. Torrefaction is defined as a thermochemical process in reduced oxygen condition and at temperature range from 200 to 300 °C for shorter residence time whereby energy yield is maximized, can be a bridging technology that can lead the conventional system (e.g. coal-fired plants) towards a sustainable energy system. In efforts to develop a commercial operable torrefaction reactor, the present study examines the minimum input condition at which biomass is torrefied and explores the heat transfer mechanisms during torrefaction in poplar wood samples. The heat transfer through the wood sample is numerically modeled and analyzed. Each poplar wood is torrefied at temperature of 250, 270, and 300 °C. The experimental study shows that the 270 °C-treatment can be deduced as the optimal input condition for torrefaction of poplar wood. A good understanding of heat transfer mechanisms can facilitate the upscaling and downscaling of torrefaction process equipment to fit the feedstock input criteria and can help to develop treatment input specifications that can maximize process efficiency.

  17. ABOVEGROUND BIOMASS DISTRIBUTION OF US EASTERN HARDWOOD FORESTS AND THE USE OF LARGE TREES AS AN INDICATOR OF FOREST DEVELOPMENT

    EPA Science Inventory

    Past clearing and harvesting of the deciduous hardwood forests of eastern USA released large amount of carbon dioxide into the atmosphere, but through recovery and regrowth these forests are now accumulating atmospheric carbon (C). This study examined quantities and distribution ...

  18. WUS and STM-based reporter genes for studying meristem development in poplar

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We describe the development of a reporter system for monitoring meristem initiation in poplar using promoters of poplar homologs to the meristem-active regulatory genes WUSCHEL (WUS) and SHOOTMERISTEMLESS (STM). When ~3 kb of the 5’ flanking regions of close homologs were used to drive expression o...

  19. Ecology of bottomland hardwood swamps of the southeast: a community profile

    SciTech Connect

    Wharton, C.H.; Kitchens, W.M.; Pendleton, E.C.; Sipe, T.W.

    1982-03-01

    This report synthesizes extant literature detailing the ecology of bottomland hardwood swamps in the Southeast. The geographic scope focuses the report to the hardwoods occupying the floodplains of the rivers whose drainages originate in the Appalachian Mountains/Piedmont and Coastal Plain (NC, SC, GA, and FL). The origin and dynamics of the floodplains are described and related to hydrology and physiographic provinces. Further, the biogeochemistry and interactions between the riverine and floodplain environments are discussed in conjunction with floodplain biology. Plant and animal community structure and ecological processes (productivity) are detailed and organized by ecological zones. The final chapter discusses the ecological value of the floodplain ecosystems and the nature of their relationships to adjacent uplands, downstream coastal estuaries and the atmosphere.

  20. Financial aspects of partial cutting practices in central Appalachian hardwoods. Forest Service research paper (Final)

    SciTech Connect

    Miller, G.W.

    1993-06-01

    Unveven-aged silvicultural practices can be used to regenerate and manage many eastern hardwood stands. Single-tree selection methods are feasible in stands where a desirable shade-tolerant commercial species can be regenerated following periodic harvests. A variety of partial cutting practices, including single-tree selection and diameter-limit cutting have been used for 30 years or more to manage central Appalachian hardwoods on the Fernow Experimental Forest near Parsons, West Virginia. Results from these research areas are presented to help forest managers evaluate financial aspects of partial cutting practices. Observed volume growth, product yields, changes in species composition, and changes in residual stand quality are used to evaluate potential financial returns. Also, practical economic considerations for applying partial cutting methods are discussed.

  1. Co-gasification of hardwood chips and crude glycerol in a pilot scale downdraft gasifier.

    PubMed

    Wei, Lin; Pordesimo, Lester O; Haryanto, Agus; Wooten, James

    2011-05-01

    Seeking appropriate approaches to utilize the crude glycerol produced in biodiesel production is very important for the economic viability and environmental impacts of biodiesel industry. Gasification may be one of options for addressing this issue. Co-gasification of hardwood chips blending with crude glycerol in various loading levels was undertaken in the study involving a pilot scale fixed-bed downdraft gasifier. The results indicated that crude glycerol loading levels affected the gasifier's performance and the quality of syngas produced. When crude glycerol loading level increased, the CO, CH(4), and tar concentrations of the syngas also increased but particle concentration decreased. Though further testing is suggested, downdraft gasifiers could be run well with hardwood chips blending with liquid crude glycerol up to 20 (wt%). The syngas produced had relatively good quality for fueling internal combustion engines. This study provides a considerable way to utilize crude glycerol. PMID:21435871

  2. Sorption of lead by Salisbury biochar produced from British broadleaf hardwood.

    PubMed

    Shen, Zhengtao; Jin, Fei; Wang, Fei; McMillan, Oliver; Al-Tabbaa, Abir

    2015-10-01

    In this study, the physicochemical properties of Salisbury biochar produced from British broadleaf hardwood and its adsorption characteristics towards lead were investigated. The biochar particle size has a significant effect on its BET surface area, cation exchange capacity and sorption of lead. The kinetics data were well fitted by the Pseudo second order model. The increase of biochar dosage increased the percentage of lead removal in solutions. The increase of initial solution pH increased the percentage of lead removal across the pH range of 2-10. The calculated maximum adsorption capacities of lead by Langmuir model were 47.66 and 30.04 mg/g for 0.15 mm and 2 mm samples. The adsorption capacities of different metals decreased in the order of lead > nickel > copper > zinc calculated in mmol/g. This study suggests a great potential of biochars derived from British broadleaf hardwood to be applied in soil remediation.

  3. Positive and negative aspects of soda/anthraquinone pulping of hardwoods.

    PubMed

    Francis, R C; Bolton, T S; Abdoulmoumine, N; Lavrykova, N; Bose, S K

    2008-11-01

    The positive aspects of the non-sulfur soda/anthraquinone (SAQ) process are mostly tied to improved energy efficiency while lower pulp brightness after bleaching is its most significant drawback. A credible method that quantifies bleachability as well as an approach that solves the problem for SAQ pulps from hardwoods will be described. A straight line correlation (R2=0.904) was obtained between O2 kappa number and final light absorption coefficient (LAC) value after standardized OD0EpD1 bleaching of nine hardwood kraft pulps from three laboratories and one pulp mill. The bleachability of pulps from four different soda processes catalyzed by anthraquinone (AQ) and 2-methylanthraquinone (MAQ) was compared to that of conventional kraft pulps by comparing O2 kappa number decrease and final LAC values. It was observed that a mild hot water pre-hydrolysis improved the bleachability of SAQ pulps to a level equal to that of kraft. PMID:18420403

  4. Sorption of lead by Salisbury biochar produced from British broadleaf hardwood.

    PubMed

    Shen, Zhengtao; Jin, Fei; Wang, Fei; McMillan, Oliver; Al-Tabbaa, Abir

    2015-10-01

    In this study, the physicochemical properties of Salisbury biochar produced from British broadleaf hardwood and its adsorption characteristics towards lead were investigated. The biochar particle size has a significant effect on its BET surface area, cation exchange capacity and sorption of lead. The kinetics data were well fitted by the Pseudo second order model. The increase of biochar dosage increased the percentage of lead removal in solutions. The increase of initial solution pH increased the percentage of lead removal across the pH range of 2-10. The calculated maximum adsorption capacities of lead by Langmuir model were 47.66 and 30.04 mg/g for 0.15 mm and 2 mm samples. The adsorption capacities of different metals decreased in the order of lead > nickel > copper > zinc calculated in mmol/g. This study suggests a great potential of biochars derived from British broadleaf hardwood to be applied in soil remediation. PMID:26141669

  5. Bottomland hardwood restoration in the Mississippi Alluvial Valley: Looking past the trees to see the forest

    USGS Publications Warehouse

    Wilson, R.R.; Oliver, J.M.; Twedt, D.J.; Uihlein, W.B.; Fredrickson, L.H.; King, S.L.; Kaminski, R.M.

    2005-01-01

    Planned restoration of bottomland hardwoods is important to adequately address negative consequences resulting from the severe loss and fragmentation of forested wetlands in the Mississippi Alluvial Valley. Reforestation efforts have been promoted through government initiatives of state and federal agencies (e.g. Wetland Reserve Program) and private conservation groups. To clarify discussions of forested wetland restoration, we offer definitions of reforestation and restoration, review historic reforestation practices, identify additional needs, and propose a conceptual framework to assist in future reforestation efforts. Future reforestation efforts should include: (1) comprehensive planning among participating agencies, (2) standardized documentation of methods, and (3) short-term and long-term monitoring protocols that permit refinement of methodologies. Implementation of these concepts will promote cooperative planning among participants and facilitate research to evaluate bottomland hardwood restoration efforts.

  6. Fine root dynamics and forest production across a calcium gradient in northern hardwood and conifer ecosystems

    USGS Publications Warehouse

    Park, B.B.; Yanai, R.D.; Fahey, T.J.; Bailey, S.W.; Siccama, T.G.; Shanley, J.B.; Cleavitt, N.L.

    2008-01-01

    Losses of soil base cations due to acid rain have been implicated in declines of red spruce and sugar maple in the northeastern USA. We studied fine root and aboveground biomass and production in five northern hardwood and three conifer stands differing in soil Ca status at Sleepers River, VT; Hubbard Brook, NH; and Cone Pond, NH. Neither aboveground biomass and production nor belowground biomass were related to soil Ca or Ca:Al ratios across this gradient. Hardwood stands had 37% higher aboveground biomass (P = 0.03) and 44% higher leaf litter production (P < 0.01) than the conifer stands, on average. Fine root biomass (<2 mm in diameter) in the upper 35 cm of the soil, including the forest floor, was very similar in hardwoods and conifers (5.92 and 5.93 Mg ha-1). The turnover coefficient (TC) of fine roots smaller than 1 mm ranged from 0.62 to 1.86 y-1 and increased significantly with soil exchangeable Ca (P = 0.03). As a result, calculated fine root production was clearly higher in sites with higher soil Ca (P = 0.02). Fine root production (biomass times turnover) ranged from 1.2 to 3.7 Mg ha-1 y-1 for hardwood stands and from 0.9 to 2.3 Mg ha-1 y -1 for conifer stands. The relationship we observed between soil Ca availability and root production suggests that cation depletion might lead to reduced carbon allocation to roots in these ecosystems. ?? 2008 Springer Science+Business Media, LLC.

  7. Altered hydrologic and geomorphic processes and bottomland hardwood plant communities of the lower White River Basin

    USGS Publications Warehouse

    King, Sammy L.; Keim, Richard F.; Hupp, Cliff R.; Edwards, Brandon L.; Kroschel, Whitney A.; Johnson, Erin L.; Cochran, J. Wesley

    2016-09-12

    Determine stand establishment patterns of bottomland hardwoods within selected plant communities along three sections of the floodplain. This study provides baseline information on the current geomorphic and hydrologic conditions of the river and can assist in the interpretation of forest responses to past hydrologic and geomorphic processes. Understanding the implications for floodplain forests of geomorphic adjustment in the Lower Mississippi Alluvial Valley is key to managing the region’s valuable resources for a sustainable future.

  8. Selective depredation of planted hardwood seedlings by wild pigs in a wetland restoration area

    SciTech Connect

    Mayer, J.J.

    1999-12-17

    Following the planting of several thousand hardwood seedlings in a 69-ha wetland restoration area in west-central South Carolina, wild pigs (Sus scrofa) depredated a large percentage of the young trees. This planting was undertaken as part of a mitigation effort to restore a bottomland hardwood community in the corridor and delta of a third order stream that had been previously impacted by the discharge of heated nuclear reactor effluent. The depredated restoration areas had been pretreated with both herbicide and control burning prior to planting the hardwood seedlings. After discovery of the wild pig damage, these areas were surveyed on foot to assess the magnitude of the depredation on the planted seedling crop. Foraging by the local wild pigs in the pretreatment areas selectively impacted only four of the nine hardwood species used in this restoration effort. Based on the surveys, the remaining five species did not appear to have been impacted at all. A variety of reasons could be used to explain this phenomenon. The pretreatment methodology is thought to have been the primary aspect of the restoration program that initially led the wild pigs to discover the planted seedlings. In addition, it is possible that a combination of other factors associated with odor and taste may have resulted in the selective depredation. Future wetland restoration efforts in areas with wild pigs should consider pretreatment methods and species to be planted. If pretreatment methods and species such as discussed in the present study must be used, then the prior removal of wild pigs from surrounding lands will help prevent depredations by this non-native species.

  9. Rare Plants of Southeastern Hardwood Forests and the Role of Predictive Modeling

    SciTech Connect

    Imm, D.W.; Shealy, H.E., Jr.; McLeod, K.W.; Collins, B.

    2001-01-01

    Habitat prediction models for rare plants can be useful when large areas must be surveyed or populations must be established. Investigators developed a habitat prediction model for four species of Southeastern hardwood forests. These four examples suggest that models based on resource and vegetation characteristics can accurately predict habitat, but only when plants are strongly associated with these variables and the scale of modeling coincides with habitat size.

  10. Computer Vision System For Locating And Identifying Defects In Hardwood Lumber

    NASA Astrophysics Data System (ADS)

    Conners, Richard W.; Ng, Chong T.; Cho, Tai-Hoon; McMillin, Charles W.

    1989-03-01

    This paper describes research aimed at developing an automatic cutup system for use in the rough mills of the hardwood furniture and fixture industry. In particular, this paper describes attempts to create the vision system that will power this automatic cutup system. There are a number of factors that make the development of such a vision system a challenge. First there is the innate variability of the wood material itself. No two species look exactly the same, in fact, they can have a significant visual difference in appearance among species. Yet a truly robust vision system must be able to handle a variety of such species, preferably with no operator intervention required when changing from one species to another. Secondly, there is a good deal of variability in the definition of what constitutes a removable defect. The hardwood furniture and fixture industry is diverse in the nature of the products that it makes. The products range from hardwood flooring to fancy hardwood furniture, from simple mill work to kitchen cabinets. Thus depending on the manufacturer, the product, and the quality of the product the nature of what constitutes a removable defect can and does vary. The vision system must be such that it can be tailored to meet each of these unique needs, preferably without any additional program modifications. This paper will describe the vision system that has been developed. It will assess the current system capabilities, and it will discuss the directions for future research. It will be argued that artificial intelligence methods provide a natural mechanism for attacking this computer vision application.

  11. Sulfate dry deposition to red oak and tulip poplar leaves

    SciTech Connect

    Vandenberg, J.J. ); Knoerr, K.R. )

    1988-01-01

    Measurement of rates of atmospheric sulfate dry deposition to vegetation is necessary to assess biophysical relationships. However, micrometeorological measurement techniques have stringent site and equipment requirements and direct estimation techniques have procedural and contamination difficulties. This paper describes the development and testing of a leaf washing technique to directly measure the rate of sulfate dry deposition to hardwood forest vegetation. The leaf washing technique was developed by comparing the rate of removal of sulfur dry deposited to leaf surfaces with the rate and extent of leaching from the internal sulfur pool.

  12. Novel process for the coproduction of xylo-oligosaccharides, fermentable sugars, and lignosulfonates from hardwood.

    PubMed

    Huang, Caoxing; Jeuck, Ben; Du, Jing; Yong, Qiang; Chang, Hou-Min; Jameel, Hasan; Phillips, Richard

    2016-11-01

    Many biorefineries have not been commercialized due to poor economic returns from final products. In this work, a novel process has been developed to coproduce valuable sugars, xylo-oligosaccharides, and lignosulfonates from hardwood. The modified process includes a mild autohydrolysis pretreatment, which enables for the recovery of the xylo-oligosaccharides in auto-hydrolysate. Following enzymatic hydrolysis, the residue is sulfomethylated to produce lignosulfonates. Recycling the sulfomethylation residues increased both the glucan recovery and lignosulfonate production. The glucose recovery was increased from 81.7% to 87.9%. Steady state simulation using 100g of hardwood produced 46.7g sugars, 5.9g xylo-oligosaccharides, and 25.7g lignosulfonates, which were significantly higher than that produced from the no-recycling process with 39.1g sugars, 5.9g xylo-oligosaccharides, and 15.0g lignosulfonates. The results indicate that this novel biorefinery process can improve the production of fermentable sugars and lignosulfonate from hardwood as compared to a conventional biorefinery process.

  13. Novel process for the coproduction of xylo-oligosaccharides, fermentable sugars, and lignosulfonates from hardwood.

    PubMed

    Huang, Caoxing; Jeuck, Ben; Du, Jing; Yong, Qiang; Chang, Hou-Min; Jameel, Hasan; Phillips, Richard

    2016-11-01

    Many biorefineries have not been commercialized due to poor economic returns from final products. In this work, a novel process has been developed to coproduce valuable sugars, xylo-oligosaccharides, and lignosulfonates from hardwood. The modified process includes a mild autohydrolysis pretreatment, which enables for the recovery of the xylo-oligosaccharides in auto-hydrolysate. Following enzymatic hydrolysis, the residue is sulfomethylated to produce lignosulfonates. Recycling the sulfomethylation residues increased both the glucan recovery and lignosulfonate production. The glucose recovery was increased from 81.7% to 87.9%. Steady state simulation using 100g of hardwood produced 46.7g sugars, 5.9g xylo-oligosaccharides, and 25.7g lignosulfonates, which were significantly higher than that produced from the no-recycling process with 39.1g sugars, 5.9g xylo-oligosaccharides, and 15.0g lignosulfonates. The results indicate that this novel biorefinery process can improve the production of fermentable sugars and lignosulfonate from hardwood as compared to a conventional biorefinery process. PMID:27543951

  14. Changes in faunal and vegetation communities along a soil calcium gradient in northern hardwood forests

    USGS Publications Warehouse

    Beier, Colin M.; Woods, Anne M.; Hotopp, Kenneth P.; Gibbs, James P.; Mitchell, Myron J.; Dovciak, Martin; Leopold, Donald J.; Lawrence, Gregory B.; Page, Blair D.

    2012-01-01

    Depletion of Ca from forest soils due to acidic deposition has had potentially pervasive effects on forest communities, but these impacts remain largely unknown. Because snails, salamanders, and plants play essential roles in the Ca cycle of northern hardwood forests, we hypothesized that their community diversity, abundance, and structure would vary with differences in biotic Ca availability. To test this hypothesis, we sampled 12 upland hardwood forests representing a soil Ca gradient in the Adirondack Mountains, New York (USA), where chronic deposition has resulted in acidified soils but where areas of well-buffered soils remain Ca rich due to parent materials. Along the gradient of increasing soil [Ca2+], we observed increasing trends in snail community richness and abundance, live biomass of redback salamanders (Plethodon cinereus (Green, 1818)), and canopy tree basal area. Salamander communities were dominated by mountain dusky salamanders (Desmognathus ochrophaeus Cope, 1859) at Ca-poor sites and changed continuously along the Ca gradient to become dominated by redback salamanders at the Ca-rich sites. Several known calciphilic species of snails and plants were found only at the highest-Ca sites. Our results indicated that Ca availability, which is shaped by geology and acidic deposition inputs, influences northern hardwood forest ecosystems at multiple trophic levels, although the underlying mechanisms require further study.

  15. Municipal wastewater effects on nitrogen cycling in a mature hardwood forest

    SciTech Connect

    Kim, D.Y.

    1992-01-01

    Land disposal of municipal wastewater is considered ecologically acceptable and cost effective. The success of land treatment systems, however, requires proper functioning of all ecosystem components. The impact of municipal wastewater irrigation on the structure and function of an Appalachian hardwood forest in Virginia was investigated. Four irrigation rates (17.5, 35, 70, and 140 cm yr[sup [minus]1]) were applied in this hardwood forest, and their effects on forest nutrient cycling were monitored for two years. Tree growth, seedling reproduction, tree mortality, species diversity, and N sequestering by vegetation were not changed significantly. Herbaceous ground cover increased due to irrigation, except for the 140 cm yr[sup [minus]1] treatment where the heavy spray caused physical damage to the cover. Depending on the rate applied, the mature hardwood forest system sequestered only [minus]3.4 to 8.2 kg N ha yr[sup [minus]1] in the aboveground biomass. Therefore, the fate of added N to the system became a function of N transformation processes in the soil. Nitrogen mineralization and nitrification increased as irrigation increased. Denitrification rates were not affected by irrigation; the process of denitrification did not constitute a significant N output from the forest system. The additional soil nitrate (NO[sub 3][sup [minus

  16. Hardwood re-sprout control in hydrologically restored Carolina Bay depression wetlands.

    SciTech Connect

    Moser, Lee, Justin

    2009-06-01

    Carolina bays are isolated depression wetlands located in the upper coastal plain region of the eastern Unites States. Disturbance of this wetland type has been widespread, and many sites contain one or more drainage ditches as a result of agricultural conversion. Restoration of bays is of interest because they are important habitats for rare flora and fauna species. Previous bay restoration projects have identified woody competitors in the seedbank and re-sprouting as impediments to the establishment of herbaceous wetland vegetation communities. Three bays were hydrologically restored on the Savannah River Site, SC, by plugging drainage ditches. Residual pine/hardwood stands within the bays were harvested and the vegetative response of the seedbank to the hydrologic change was monitored. A foliar herbicide approved for use in wetlands (Habitat® (Isopropylamine salt of Imazapyr)) was applied on one-half of each bay to control red maple (Acer rubrum L.), sweet gum (Liquidambar styraciflua L.), and water oak (Quercus nigra L.) sprouting. The effectiveness of the foliar herbicide was tested across a hydrologic gradient in an effort to better understand the relationship between depth and duration of flooding, the intensity of hardwood re-sprout pressure, and the need for hardwood management practices such as herbicide application.

  17. Herpetofaunal Response to Gap and Skidder-Rut Wetland Creation in a Southern Bottomland Hardwood Forest.

    SciTech Connect

    Cromer R.B.; Lanham J.D.; Hanlin H.H.

    2002-05-01

    Herpetofaunal Response to Gap and Skidder-Rut Wetland Creation in a Southern Bottomland Hardwood Forest. Cromer R.B., J.D.Lanham, and H.H. Hanlin.Forest Science, 1 May 2002, vol. 48, iss. 2, pp. 407-413(7) We compared herpetofaunal communities in recently harvested gaps, skidder trails, and unharvested depressional wetlands to assess the effects of group-selection harvesting and skidder traffic on reptiles and amphibians in a southern bottomland hardwood forest. From January 1, 1997 to December 31, 1998 we captured 24,292 individuals representing 55 species of reptiles and amphibians at the Savannah River Site in Barnwell County, South Carolina. Forty-two species (n = 6,702 individuals) were captured in gaps, 43 species (n = 8,863 individuals) were captured along skid trails between gaps and 43 species (n = 8,727 individuals) were captured in bottomland depressions over the 2 yr period. Three vegetation variables and six environmental variables were correlated with herpetofaunal abundance. Salamander abundance, especially for species in the genus Ambystoma, was negatively associated with areas with less canopy cover and pronounced rutting (i.e., gaps and skidder trails). Alternatively, treefrog (Hylidae) abundance was positively associated with gap creation. Results from this study suggest that group selection harvests and skidder rutting may alter the herpetofaunal species composition in southern bottomland hardwoods by increasing habitat suitability for some species while diminishing it for others.

  18. Hardwood energy crops and wildlife diversity: Investigating potential benefits for breeding birds and small mammals

    SciTech Connect

    Schiller, A.; Tolbert, V.R.

    1996-08-01

    Hardwood energy crops have the potential to provide a profit to growers as well as environmental benefits (for water quality, soil stabilization, chemical runoff, and wildlife habitat). Environmental considerations are important for both sustainable development of bioenergy technologies on agricultural lands, and for public support. The Environmental Task of the US DOE`s Biofuels feedstock Development Program (BFDP) is working with industry, universities and others to determine how to plant, manage and harvest these crops to maximize environmental advantages and minimize impacts while economically meeting production needs. One research objective is to define and improve wildlife habitat value of these energy crops by exploring how breeding birds and small mammals use them. The authors have found increased diversity of birds in tree plantings compared to row crops. However, fewer bird and small mammal species use the tree plantings than use natural forest. Bird species composition on hardwood crops studied to date is a mixture of openland and forest bird species. Restricted research site availability to date has limited research to small acreage sites of several years of age, or to a few larger acreage but young (1--2 year) plantings. Through industry collaboration, research began this season on bird use of diverse hardwood plantings (different ages, acreages, tree species) in the southeast. Together with results of previous studies, this research will help define practical energy crop guidelines to integrate native wildlife benefits with productive energy crops.

  19. Responses of condensed tannins in poplar roots to fertilization and gypsy moth defoliation.

    PubMed

    Kosola, Kevin R; Parry, Dylan; Workmaster, Beth Ann A

    2006-12-01

    We examined the effects of fertilization and gypsy moth defoliation on condensed tannin concentration (%CT) of hybrid poplar (Populus x canadensis cv 'Eugeneii') fine roots in the summers of 1997 and 1998. This factorial experiment included two defoliation treatments (defoliated and a foliated control) and fertilization treatments (100 kg nitrogen (N) ha(-1) and an unfertilized control). Gypsy moth (Lymantria dispar L.) populations were experimentally increased to obtain defoliation in the summers of 1996, 1997 and 1998; fertilization subplots were supplemented with NH4NO3 (100 kg N ha(-1)) in the spring of each year. Despite the severity of defoliation, the effects were small, and significant on only two sampling dates: in May 1997, when fine root %CT was 23% lower in the defoliated trees, and in November 1997, when trees in the defoliated unfertilized plots had 35% higher root %CT than trees in all other plots. Defoliation effects on root %CT did not follow the same seasonal pattern as defoliation effects on root starch content, N uptake capacity or leaf %CT. Regulation of root condensed tannin concentration appeared to be partially uncoupled from these traits. The small transient effects on root defense reflect the resilience of this early successional tree to severe early season defoliation.

  20. Remediation of polycyclic aromatic hydrocarbon compounds in groundwater using poplar trees.

    PubMed

    Widdowson, Mark A; Shearer, Sandra; Andersen, Rikke G; Novak, John T

    2005-03-15

    A seven-year study was conducted to assess the effectiveness of hybrid poplar trees to remediate polycyclic aromatic hydrocarbon (PAH) compounds in soil and groundwater at a creosote-contaminated site. A reduction in the areal extent of the PAH plume was observed in the upper half of the 2-m-thick saturated zone, and PAH concentration levels in the groundwater declined throughout the plume. PAH concentrations began to decline during the period between the third and fourth growing seasons, which coincided with the propagation of the tree roots to the water table region. Remediation was limited to naphthalene and several three-ring PAHs (acenaphthylene and acenaphthene). PAH concentrations in soil and aquifer sediment samples also declined over time; however, levels of four-ring PAHs persisted at the lower depths during the study period. The naphthalene to total PAH concentration ratio in the most contaminated groundwater decreased from >0.90 at the beginning of the second growing season to approximately 0.70 at the end the study. Remediation in the lower region of the saturated zone was limited bythe presence of a 0.3-m-thick layer of creosote present as a dense nonaqueous phase liquid (DNAPL). The nearly steady-state condition of the PAH concentrations observed during the last three years of the study suggests that the effectiveness of the phytoremediation system is limited by the rate of PAH dissolution from the DNAPL source.

  1. New hydroxylated metabolites of 4-monochlorobiphenyl in whole poplar plants

    PubMed Central

    2011-01-01

    Two new monohydroxy metabolites of 4-monochlorobiphenyl (CB3) were positively identified using three newly synthesized monohydroxy compounds of CB3: 2-hydroxy-4-chlorobiphenyl (2OH-CB3), 3-hydroxy-4-chlorobiphenyl (3OH-CB3) and 4-hydroxy-3-chlorobiphenyl (4OH-CB2). New metabolites of CB3, including 2OH-CB3 and 3OH-CB3, were confirmed in whole poplars (Populus deltoides × nigra, DN34), a model plant in the application of phytoremediation. Furthermore, the concentrations and masses of 2OH-CB3 and 3OH-CB3 formed in various tissues of whole poplar plants and controls were measured. Results showed that 2OH-CB3 was the major product in these two OH-CB3s with chlorine and hydroxyl moieties in the same phenyl ring of CB3. Masses of 2OH-CB3 and 3OH-CB3 in tissues of whole poplar plants were much higher than those in the hydroponic solution, strongly indicating that the poplar plant itself metabolizes CB3 to both 2OH-CB3 and 3OH-CB3. The total yield of 2OH-CB3 and 3OH-CB3, with chlorine and hydroxyl in the same phenyl ring of CB3, was less than that of three previously found OH-CB3s with chlorine and hydroxyl in the opposite phenyl rings of CB3 (2'OH-CB3, 3'OH-CB3, and 4'OH-CB3). Finally, these two newly detected OH-CB3s from CB3 in this work also suggests that the metabolic pathway was via epoxide intermediates. These five OH-CB3s clearly showed the complete metabolism profile from CB3 to monohydroxylated CB3. More importantly, it's the first report and confirmation of 2OH-CB3 and 3OH-CB3 (new metabolites of CB3) in a living organism. PMID:22185578

  2. Effect of drought on fine roots productivity in poplar-based short rotation coppice

    NASA Astrophysics Data System (ADS)

    Mani Tripathi, Abhishek; Fischer, Milan; Berhongaray, Gonzalo; Orság, Matěj; Trnka, Miroslav

    2015-04-01

    Short rotation woody crops (SRWC) are alternative source of bioenergy, which apart from their 'carbon neutrality' have potential to store carbon (C) into soil and mitigate the increasing CO2 emission. Studies of below ground biomass of trees are divided into two types according to root diameter - analysis of fine roots (less than 2 mm) and coarse roots (more than 2 mm). Trees roots are spatially highly heterogeneous and it requires large number of samples to obtain a representative estimate of belowground biomass. For this study we used hybrid poplar clone J-105 (Populus nigra x P. maximowiczii) grown under short rotation coppice system in the region of Bohemian-Moravian Highland (49o32'N, 16o15'E and altitude 530 m a.s.l.) since April 2000. The plantation with planting density of 9,216 trees ha-1 was established on the former agricultural land and the length of the rotation cycle was set to 6-8 years. While mean annual rainfall was 609 mm with mean annual temperature 7.2oC during 1981-2013 significant increase of temperature and more frequent droughts are expected. In 2011, we established drought experiment based on throughfall exclusion system, reducing up to 70 % of throughfall precipitation. Thus 2 treatments with normal and lowered soil moisture levels were introduced. In January and February 2014, we cored 18 places including drought and control using root bipartite auger. The main goal of the study is to assess the response of fine roots productivity and fine roots vertical distribution on the reduced soil water availability. Results will be presented at the conference. Acknowledgements: This study was funded by research project IGA Mendel University 2014 "Study of below ground biomass in short rotation poplar coppice (J-105) in the Czech-Moravian Highlands", project PASED (KONTAKT II LH12037 ʺDevelopment of models for the assessment of abiotic stresses in selected energy woody plantsʺ and "Building up a multidisciplinary scientific team focused on drought

  3. Greenhouse gas balance of cropland conversion to bioenergy poplar short rotation coppice

    NASA Astrophysics Data System (ADS)

    Sabbatini, S.; Arriga, N.; Bertolini, T.; Castaldi, S.; Chiti, T.; Consalvo, C.; Njakou Djomo, S.; Gioli, B.; Matteucci, G.; Papale, D.

    2015-05-01

    The production of bioenergy in Europe is one of the strategies conceived to reduce greenhouse gas (GHG) emissions. The suitability of the land use change from a cropland (REF site) to a short rotation coppice plantation of hybrid poplar (SRC site) was investigated by comparing the GHG budgets of these two systems over 24 months in Viterbo, Italy. Eddy covariance measurements were carried out to quantify the net ecosystem exchange of CO2 (FCO2), whereas chambers were used to measure N2O and CH4 emissions from soil. Soil organic carbon (SOC) of an older poplar plantation was used to estimate via a regression the SOC loss due to SRC establishment. Emissions from tractors and from production and transport of agricultural inputs (FMAN) were modelled and GHG emission offset due to fossil fuel substitution was credited to the SRC site considering the C intensity of natural gas. Emissions due to the use of the biomass (FEXP) were also considered. The suitability was finally assessed comparing the GHG budgets of the two sites. FCO2 was the higher flux in the SRC site (-3512 ± 224 g CO2 eq m-2 in two years), while in the REF site it was -1838 ± 107 g CO2 m-2 in two years. FEXP was equal to 1858 ± 240 g CO2 m-2 in 24 months in the REF site, thus basically compensating FCO2, while it was 1118 ± 521 g CO2 eq m-2 in 24 months in the SRC site. This latter could offset -379.7 ± 175.1 g CO2 eq m-2 from fossil fuel displacement. Soil CH4 and N2O fluxes were negligible. FMAN weighed 2 and 4% in the GHG budgets of SRC and REF sites respectively, while the SOC loss weighed 455 ± 524 g CO2 m-2 in two years. Overall, the REF site was close to neutrality in a GHG perspective (156 ± 264 g CO2 eq m-2), while the SRC site was a net sink of -2202 ± 792 g CO2 eq m-2. In conclusion the experiment led to a positive evaluation of the conversion of cropland to bioenergy SRC from a GHG viewpoint.

  4. Greenhouse gas balance of cropland conversion to bioenergy poplar short-rotation coppice

    NASA Astrophysics Data System (ADS)

    Sabbatini, S.; Arriga, N.; Bertolini, T.; Castaldi, S.; Chiti, T.; Consalvo, C.; Njakou Djomo, S.; Gioli, B.; Matteucci, G.; Papale, D.

    2016-01-01

    The production of bioenergy in Europe is one of the strategies conceived to reduce greenhouse gas (GHG) emissions. The suitability of the land use change from a cropland (REF site) to a short-rotation coppice plantation of hybrid poplar (SRC site) was investigated by comparing the GHG budgets of these two systems over 24 months in Viterbo, Italy. This period corresponded to a single rotation of the SRC site. The REF site was a crop rotation between grassland and winter wheat, i.e. the same management of the SRC site before the conversion to short-rotation coppice. Eddy covariance measurements were carried out to quantify the net ecosystem exchange of CO2 (FCO2), whereas chambers were used to measure N2O and CH4 emissions from soil. The measurements began 2 years after the conversion of arable land to SRC so that an older poplar plantation was used to estimate the soil organic carbon (SOC) loss due to SRC establishment and to estimate SOC recovery over time. Emissions from tractors and from production and transport of agricultural inputs (FMAN) were modelled. A GHG emission offset, due to the substitution of natural gas with SRC biomass, was credited to the GHG budget of the SRC site. Emissions generated by the use of biomass (FEXP) were also considered. Suitability was finally assessed by comparing the GHG budgets of the two sites. CO2 uptake was 3512 ± 224 g CO2 m-2 at the SRC site in 2 years, and 1838 ± 107 g CO2 m-2 at the REF site. FEXP was equal to 1858 ± 240 g CO2 m-2 at the REF site, thus basically compensating for FCO2, while it was 1118 ± 521 g CO2 m-2 at the SRC site. The SRC site could offset 379.7 ± 175.1 g CO2eq m-2 from fossil fuel displacement. Soil CH4 and N2O fluxes were negligible. FMAN made up 2 and 4 % in the GHG budgets of SRC and REF sites respectively, while the SOC loss was 455 ± 524 g CO2 m-2 in 2 years. Overall, the REF site was close to neutrality from a GHG perspective (156 ± 264 g CO2eq m-2), while the SRC site was a net sink of

  5. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral "Salicoid" Genome Duplication.

    PubMed

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-01-01

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the "salicoid" duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants. PMID:27352946

  6. Characterization of top phase oil obtained from co-pyrolysis of sewage sludge and poplar sawdust.

    PubMed

    Zuo, Wu; Jin, Baosheng; Huang, Yaji; Sun, Yu

    2014-01-01

    To research the impact of adding sawdust on top phase oil, a sewage sludge and poplar sawdust co-pyrolysis experiment was performed in a fixed bed. Gas chromatography (GC)/mass spectrometry (MS) was used to analyze the component distribution of top phase oil. Higher heating value, viscosity, water content, and pH of the top phase oil product were determined. The highest top phase oil yield (5.13 wt%) was obtained from the mixture containing 15% poplar sawdust, while the highest oil yield (16.51 wt%) was obtained from 20% poplar sawdust. Top phase oil collected from the 15% mixture also has the largest amount of aliphatics and the highest higher heating value (28.6 MJ/kg). Possible reaction pathways were proposed to explain the increase in the types of phenols present in the top phase oil as the proportion of poplar sawdust used in the mixture increased. It can be concluded that synergetic reactions occurred during co-pyrolysis of sewage sludge and poplar sawdust. The results indicate that the high ash content of the sewage sludge may be responsible for the characteristic change in the top phase oil obtained from the mixtures containing different proportions of sewage sludge and poplar sawdust. Consequently, co-pyrolysis of the mixture containing 15 % poplar sawdust can increase the yield and the higher heating value of top phase oil. PMID:24756683

  7. Enhancement of Biogas Yield of Poplar Leaf by High-Solid Codigestion with Swine Manure.

    PubMed

    Wangliang, Li; Zhikai, Zhang; Guangwen, Xu

    2016-05-01

    The aim of this work was to examine the improvement of anaerobic biodegradability of organic fractions of poplar leaf from codigestion with swine manure (SM), thus biogas yield and energy recovery. When poplar leaf was used as a sole substrate, the cumulative biogas yield was low, about 163 mL (g volatile solid (VS))(-1) after 45 days of digestion with a substrate/inoculum ratio of 2.5 and a total solid (TS) of 22 %. Under the same condition, the cumulative biogas yield of poplar leaf reached 321 mL (g VS)(-1) when SM/poplar leaf ratio was 2:5 (based on VS). The SM/poplar leaf ratio can determine C/N ratio of the cosubstrate and thus has significant influence on biogas yield. When the SM/poplar leaf ratio was 2:5, C/N ratio was calculated to be 27.02, and the biogas yield in 45 days of digestion was the highest. The semi-continuous digestion of poplar leaf was carried out with the organic loading rate of 1.25 and 1.88 g VS day(-1). The average daily biogas yield was 230.2 mL (g VS)(-1) and 208.4 mL (g VS)(-1). The composition analysis revealed that cellulose and hemicellulose contributed to the biogas production. PMID:26810922

  8. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral “Salicoid” Genome Duplication

    PubMed Central

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-01-01

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the “salicoid” duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants. PMID:27352946

  9. Phytoextraction of risk elements by willow and poplar trees.

    PubMed

    Kacálková, Lada; Tlustoš, Pavel; Száková, Jiřina

    2015-01-01

    To characterize the phytoextraction efficiency of two clones of willow trees (Salix x smithiana Willd., Salix rubens) and two clones of poplar trees (Populus nigra x maximowiczii, Populus nigra Wolterson) were planted in contaminated soil (0.4-2.0 mg Cd.kg(-1), 78-313 mg Zn.kg(-1), 21.3-118 mg Cu.kg(-1)). Field experiment was carried out in Czech Republic. The study investigated their ability to accumulate heavy metals (Cd, Zn, and Cu) in harvestable plant parts. The poplars produced higher amount of biomass than willows. Both Salix clones accumulated higher amount of Cd, Zn and Cu in their biomass (maximum 6.8 mg Cd.kg(-1), 909 mg Zn.kg(-1), and 17.7 mg Cu.kg(-1)) compared to Populus clones (maximum 2.06 mg Cd.kg(-1), 463 mg Zn.kg(-1), and 11.8 mg Cu.kg(-1)). There were no significant differences between clones of individual species. BCs for Cd and Zn were greater than 1 (the highest in willow leaves). BCs values of Cu were very low. These results indicate that Salix is more suitable plant for phytoextraction of Cd and Zn than Populus. The Cu phytoextraction potential of Salix and Populus trees was not confirmed in this experiment due to low soil availability of this element.

  10. Soils organic C sequestration under poplar and willow agroforestry systems

    NASA Astrophysics Data System (ADS)

    Gunina, Anna; Tariq, Azeem; Lamersdorf, Norbert

    2015-04-01

    Short rotation coppices (SRC) as monocultures or as agroforestry (AF) applications (e.g. alley cropping) are two techniques to implement forest into agricultural practices. Despite afforestation promotes soil carbon (C) accumulation, age and type of the tree stand can affect the C accumulation in different degrees. Here, we studied the impact of afforestation on C accumulation for: i) pure SCR of willow (Salix viminalis x Salix schwerinii) and poplar (Populus nigra x Populus maximowiczii) and ii) AF cropping system with willow. Forest systems have been established within the BEST agroforestry project in Germany. Adjacent agricultural field have been used as a control. Soil samples were collected in 2014, three years after plantation establishment, from three soil depths: 0-3, 3-20, and 20-30 cm. Total organic C, labile C (incubation of 20 g soil during 100 days with measuring of CO2) and aggregate structure were analysed. Additionally, density fractionation of the samples from 0-3 cm was applied to separate particulate organic matter (POM) and mineral fractions. Aggregates and density fractions were analyzed for C content. High input of plant litter as well as root exudates have led to increases of organic C in AF and SRC plots compare to cropland, mainly in the top 0-3 cm. The highest C content was found for willow SRC (18.2 g kg-1 soil), followed by willow-AF (15.6 g kg-1 soil), and poplar SRC (13.7 g kg-1 soil). Carbon content of cropland was 12.5 g kg-1 soil. Absence of ploughing caused increase portion of macroaggregates (>2000 μm) under SRC and AF in all soil layers as well as the highest percentage of C in that aggregate size class (70-80%). In contrast, C in cropland soil was mainly accumulated in small macroaggregates (250-2000 μm). Intensive mineralisation of fresh litter and old POM, taking place during first years of trees development, resulted to similar portions of free POM for willow AF, willow SRC and cropland (8%), and even lower ones for poplar

  11. Comparisons of Ethanol Extracts of Chinese Propolis (Poplar Type) and Poplar Gums Based on the Antioxidant Activities and Molecular Mechanism

    PubMed Central

    Zhang, Jianglin; Cao, Xueping; Ping, Shun; Wang, Kai; Shi, Jinhu; Zhang, Cuiping; Zheng, Huoqing; Hu, Fuliang

    2015-01-01

    The biological activities of propolis are varied from plant sources and the prominent antioxidant effects of Chinese propolis (poplar type) have been extensively reported. Oxidative stress is associated with inflammation and induces many diseases. In the study, to evaluate antioxidant capacities and clarify the underlying molecular mechanisms of ethanol extracts of Chinese propolis (EECP) and ethanol extracts of poplar gums (EEPG), we analyzed their compositions by HPLC, evaluating their free radical scavenging activities and reducing power by chemical analysis methods. Moreover, we studied the roles of EECP and EEPG on the elimination of ROS and expressions of antioxidant genes (HO-1, TrxR1, GCLM, and GCLC) in RAW264.7 cells. We further investigated the effects of MAPKs on the antioxidant genes expression by specific inhibitors. The nucleus translocation effects of Nrf2 were also measured by confocal microscopy analysis. The results indicated that EECP had higher TPC and FDC values but regarding TFC values were not significant. EECP also possessed more contents of 11 compounds than EEPG. Both phytochemical analysis and cell experiment reflected that EECP exerted stronger antioxidant activities than EEPG. EECP and EEPG enhanced endogenous antioxidant defenses by eliminating reactive oxygen species directly and activating Erk-Nrf2-HO1, GCLM, and TrxR1 signal pathways. PMID:25802536

  12. Effects of wildlife forestry on abundance of breeding birds in bottomland hardwood forests of Louisiana

    USGS Publications Warehouse

    Norris, Jennifer L.; Chamberlain, Michael J.; Twedt, Daniel J.

    2009-01-01

    Effects of silvicultural activities on birds are of increasing interest because of documented national declines in breeding bird populations for some species and the potential that these declines are in part due to changes in forest habitat. Silviculturally induced disturbances have been advocated as a means to achieve suitable forest conditions for priority wildlife species in bottomland hardwood forests. We evaluated how silvicultural activities on conservation lands in bottomland hardwood forests of Louisiana, USA, influenced species-specific densities of breeding birds. Our data were from independent studies, which used standardized point-count surveys for breeding birds in 124 bottomland hardwood forest stands on 12 management areas. We used Program DISTANCE 5.0, Release 2.0 (Thomas et al. 2006) to estimate density for 43 species with > 50 detections. For 36 of those species we compared density estimates among harvest regimes (individual selection, group selection, extensive harvest, and no harvest). We observed 10 species with similar densities in those harvest regimes compared with densities in stands not harvested. However, we observed 10 species that were negatively impacted by harvest with greater densities in stands not harvested, 9 species with greater densities in individual selection stands, 4 species with greater densities in group selection stands, and 4 species with greater densities in stands receiving an extensive harvest (e.g., > 40% canopy removal). Differences in intensity of harvest influenced densities of breeding birds. Moreover, community-wide avian conservation values of stands subjected to individual and group selection, and stands not harvested, were similar to each other and greater than that of stands subjected to extensive harvest that removed > 40% canopy cover. These results have implications for managers estimating breeding bird populations, in addition to predicting changes in bird communities as a result of prescribed and future

  13. Foraging behavior of three passerines in mature bottomland hardwood forests during summer.

    SciTech Connect

    Buffington, J., Matthew; Kilgo, John, C.; Sargent, Robert, A.; Miller, Karl, V.; Chapman, Brian, R.

    2001-08-01

    Attention has focused on forest management practices and the interactions between birds and their habitat, as a result of apparent declines in populations of many forest birds. Although avian diversity and abundance have been studied in various forest habitats, avian foraging behavior is less well known. Although there are published descriptions of avian foraging behaviors in the western United States descriptions from the southeastern United States are less common. This article reports on the foraging behavior of the White-eyed Vireo, Northern Parula, and Hooded Warbler in mature bottomland hardwood forests in South Carolina.

  14. Influences of Herbivory and Canopy Opening Size on Forest Regeneration in a Southern Bottomland Hardwood Forest

    SciTech Connect

    Castleberry, S.B.; Ford, W.M.; Miller, K.V.; Smith, W.P.

    1999-07-06

    Examination of the effects on white-tail deer browsing and canopy opening size on relative abundance and diversity of woody and herbaceous regeneration in various sized forest openings in a Southern bottomland hardwood forest over three growing seasons (1995-1997). Herbaceous richness, diversity or evenness did not differ among exclosure types in any year of the study. Overall browsing rates on both woody and herbaceous vegetation were low throughout all the three years of the study. Low browsing rates reflect seasonal changes in habitat use by deer. Other factors may have influenced the initial vegetative response more than herbivory or gap size.

  15. The effects of high-tannin leaf litter from transgenic poplars on microbial communities in microcosm soils.

    PubMed

    Winder, Richard S; Lamarche, Josyanne; Constabel, C Peter; Hamelin, Richard C

    2013-01-01

    The impacts of leaf litter from genetically modified hybrid poplar accumulating high levels of condensed tannins (proanthocyanidins) were examined in soil microcosms consisting of moss growing on sieved soil. Moss preferentially proliferated in microcosms with lower tannin content; DGGE (denaturing gradient gel electrophoresis) detected increased fungal diversity in microcosms with low-tannin litter. The proportion of cloned rDNA sequences from Actinobacteria decreased with litter addition while Bacteroidetes, Chloroflexi, Cyanobacteria, and α-Proteobacteria significantly increased. β-Proteobacteria were proportionally more numerous at high-tannin levels. Tannins had no significant impact on overall diversity of bacterial communities analyzed with various estimators. There was an increased proportion of N-fixing bacteria corresponding to the addition of litter with low-tannin levels. The addition of litter increased the proportion of Ascomycota/Basidiomycota. Dothideomycetes, Pucciniomycetes, and Tremellomycetes also increased and Agaricomycetes decreased. Agaricomycetes and Sordariomycetes were significantly more abundant in controls, whereas Pucciniomycetes increased in soil with litter from transformed trees (P = 0.051). Richness estimators and diversity indices revealed no significant difference in the composition of fungal communities; PCoA (principal coordinate analyses) partitioned the fungal communities into three groups: (i) those with higher amounts of added tannin from both transformed and untransformed treatments, (ii) those corresponding to soils without litter, and (iii) those corresponding to microcosms with litter added from trees transformed only with a β-glucuronidase control vector. While the litter from transformed poplars had significant effects on soil microbe communities, the observed impacts reflected known impacts on soil processes associated with tannins, and were similar to changes that would be expected from natural variation in

  16. The effects of high-tannin leaf litter from transgenic poplars on microbial communities in microcosm soils

    PubMed Central

    Winder, Richard S.; Lamarche, Josyanne; Constabel, C. Peter; Hamelin, Richard C.

    2013-01-01

    The impacts of leaf litter from genetically modified hybrid poplar accumulating high levels of condensed tannins (proanthocyanidins) were examined in soil microcosms consisting of moss growing on sieved soil. Moss preferentially proliferated in microcosms with lower tannin content; DGGE (denaturing gradient gel electrophoresis) detected increased fungal diversity in microcosms with low-tannin litter. The proportion of cloned rDNA sequences from Actinobacteria decreased with litter addition while Bacteroidetes, Chloroflexi, Cyanobacteria, and α-Proteobacteria significantly increased. β-Proteobacteria were proportionally more numerous at high-tannin levels. Tannins had no significant impact on overall diversity of bacterial communities analyzed with various estimators. There was an increased proportion of N-fixing bacteria corresponding to the addition of litter with low-tannin levels. The addition of litter increased the proportion of Ascomycota/Basidiomycota. Dothideomycetes, Pucciniomycetes, and Tremellomycetes also increased and Agaricomycetes decreased. Agaricomycetes and Sordariomycetes were significantly more abundant in controls, whereas Pucciniomycetes increased in soil with litter from transformed trees (P = 0.051). Richness estimators and diversity indices revealed no significant difference in the composition of fungal communities; PCoA (principal coordinate analyses) partitioned the fungal communities into three groups: (i) those with higher amounts of added tannin from both transformed and untransformed treatments, (ii) those corresponding to soils without litter, and (iii) those corresponding to microcosms with litter added from trees transformed only with a β-glucuronidase control vector. While the litter from transformed poplars had significant effects on soil microbe communities, the observed impacts reflected known impacts on soil processes associated with tannins, and were similar to changes that would be expected from natural variation in

  17. Landfill leachate treatment with willows and poplars--efficiency and plant response.

    PubMed

    Dimitriou, I; Aronsson, P

    2010-11-01

    Irrigation of willow and poplar short-rotation coppice with landfill leachate is an increasingly interesting treatment option. Minimal leaching to groundwater and disturbance to plant growth must be ensured, but in such systems, where various site-specific factors interact, a case-specific approach is needed to determine potential hazards. This paper compares the effect of leachate irrigation on willow grown in clay lysimeters and poplar grown in sand lysimeters. Leachate irrigation increased willow biomass production, but not that of poplar. Near-zero nitrate-N concentrations were found in drainage water for both species after 2 years of irrigation. Ability to retain total N and P, and TOC was relatively high for willow, taking into account the large amounts supplied, and better than for poplar. To reduce environmental risks the irrigation load should be reduced, but if leachate concentrations are reduced, the irrigation load can be as high as 6mm/day.

  18. Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.

    PubMed

    Barrès, Benoît; Halkett, Fabien; Dutech, Cyril; Andrieux, Axelle; Pinon, Jean; Frey, Pascal

    2008-09-01

    Dispersal has a great impact on the genetic structure of populations, but remains difficult to estimate by direct measures. In particular, gradual and stochastic dispersal are often difficult to assess and to distinguish, although they have different evolutionary consequences. Plant pathogens, especially rust fungi, are suspected to display both dispersal modes, though on different spatial scales. In this study, we inferred dispersal capacities of the poplar rust fungus Melampsora larici-populina by examining the genetic diversity and structure of 13 populations from eight European and two overseas countries in the Northern hemisphere. M. larici-populina was sampled from both cultivated hybrid poplars and on the wild host, Populus nigra. The populations were analyzed with 11 microsatellite and 8 virulence markers. Although isolates displayed different virulence profiles according to the host plant, neutral markers revealed little population differentiation with respect to the type of host. This suggests an absence of reproductive isolation between populations sampled from cultivated and wild poplars. Conversely, studying the relationship between geographic and genetic structure allowed us to distinguish between isolation by distance (IBD) patterns and long distance dispersal (LDD) events. The European populations exhibited a significant IBD pattern, suggesting a regular and gradual dispersal of the pathogen over this spatial scale. Nonetheless, the genetic differentiation between these populations was low, suggesting an important gene flow on a continental scale. The two overseas populations from Iceland and Canada were shown to result from rare LDD events, and exhibited signatures of strong founder effects. Furthermore, the high genetic differentiation between both populations suggested that these two recent introductions were independent. This study illustrated how the proper use of population genetics methods can enable contrasted dispersal modes to be revealed.

  19. Quantification of carbon sources for isoprene emission in poplar leaves

    NASA Astrophysics Data System (ADS)

    Kreutzwieseer, J.; Graus, M.; Schnitzler, J. P.; Heizmann, U.; Rennenberg, H.; Hansel, A.

    2003-12-01

    Isoprene is the most abundant volatile organic compound emitted by plants and in particular by trees. Current interest in understanding its biosynthesis in chloroplasts is forced by the important role isoprene plays in atmospheric chemistry. Leaf isoprene formation is closely linked to photosynthesis by a dynamic use of recently fixed photosynthetic precursors in the chloroplast. Under steady state conditions in [13C]CO2 atmosphere approximately 75 % of isoprene became labeled within minutes. The source of unlabeled C is suggested to be of extra-chloroplastidic and/or from starch degradation. In order to test whether these alternative carbon sources - leaf internal C-pools and xylem-transported carbohydrates, contribute to leaf isoprene formation in poplar (Populus tremula x P. alba) on-line proton-transfer-reaction-mass spectrometry (PTR-MS) was used to follow 13C-labeling kinetics.

  20. The vernal dam: Plant-microbe competition for nitrogen in northern hardwood forests. [Allium tricoccum

    SciTech Connect

    Zak, D.R. ); Groffman, P.M. ); Pregitzer, K.S.; Tiedje, J.M. ); Christensen, S. )

    1990-04-01

    Nitrogen (N) uptake by spring ephemeral communities has been proposed as a mechanism that retains N within northern hardwood forests during the season of maximum loss. To understand better the importance of these plants in retaining N, the authors followed the movement of {sup 15}NH{sub 4}{sup +} and {sup 15}NO{sub 3}{sup {minus}} into plant and microbial biomass. Two days following isotope addition, microbial biomass represented the largest labile pool of N and contained 8.5 times as much N as Allium tricoccum L. biomass. Microbial immobilization of {sup 15}N was 10-20 times greater than uptake by A. tricoccum. Nitrification of {sup 15}NH{sub 4}{sup +} was five times lower in cores containing A. tricoccum compared to those without the spring ephemeral. Spring N retention within northern hardwood forests cannot be fully explained by plant uptake because microbial immobilization represented a significantly larger sink for N. Results suggest that plant and microbial uptake of NH{sub 4}{sup +} may reduce the quantity of substrate available for nitrification and thereby lessen the potential for NO{sub 3}{sup {minus}} loss via denitrification and leaching.

  1. Winter climate change affects growing-season soil microbial biomass and activity in northern hardwood forests.

    PubMed

    Durán, Jorge; Morse, Jennifer L; Groffman, Peter M; Campbell, John L; Christenson, Lynn M; Driscoll, Charles T; Fahey, Timothy J; Fisk, Melany C; Mitchell, Myron J; Templer, Pamela H

    2014-11-01

    Understanding the responses of terrestrial ecosystems to global change remains a major challenge of ecological research. We exploited a natural elevation gradient in a northern hardwood forest to determine how reductions in snow accumulation, expected with climate change, directly affect dynamics of soil winter frost, and indirectly soil microbial biomass and activity during the growing season. Soils from lower elevation plots, which accumulated less snow and experienced more soil temperature variability during the winter (and likely more freeze/thaw events), had less extractable inorganic nitrogen (N), lower rates of microbial N production via potential net N mineralization and nitrification, and higher potential microbial respiration during the growing season. Potential nitrate production rates during the growing season were particularly sensitive to changes in winter snow pack accumulation and winter soil temperature variability, especially in spring. Effects of elevation and winter conditions on N transformation rates differed from those on potential microbial respiration, suggesting that N-related processes might respond differently to winter climate change in northern hardwood forests than C-related processes. PMID:24796872

  2. Classification of hardwood and swamp forests on the Savannah River Plant, South Carolina

    SciTech Connect

    Whipple, S.A.; Wellman, L.H.; Good, B.J.

    1981-04-01

    Fifty-eignt hardwood and swamp forest stands were sampled on the Savannah River Plant (SRP), South Carolina, to describe the relationship between the vegetational composition and the soil, topographic, and flooding characteristics of each stand. The stands were samples over the range from dry upland to deeply flooded (2.4m) sites. Seven forest communities were recognized. The boundaries between these communities are not usually distinct, but the classification serves as a basis for a discussion of the patterns of hardwood and swamp forests on the SRP and a comparison of this forest variation to variation of other forests in the Southeast. The forest communities found on the most deeply flooded sites are dominated almost exclusively by Taxodium distichum and Nyssa aquatica. With shallower flooding or only winter flooding, Fraxinus pennsylvanica, Acer rubrum, Liquidambar styraciflua, and Quercus laurifolia become important dominants. Mesic sites that are seldom, if ever, flooded are dominated by N. sylvatica, L. styraciflua, and A. rubrum. The driest upland or upper slope positions are dominated by Q. alba, Carya tomentosa, and L. styraciflua.

  3. Winter climate change affects growing-season soil microbial biomass and activity in northern hardwood forests.

    PubMed

    Durán, Jorge; Morse, Jennifer L; Groffman, Peter M; Campbell, John L; Christenson, Lynn M; Driscoll, Charles T; Fahey, Timothy J; Fisk, Melany C; Mitchell, Myron J; Templer, Pamela H

    2014-11-01

    Understanding the responses of terrestrial ecosystems to global change remains a major challenge of ecological research. We exploited a natural elevation gradient in a northern hardwood forest to determine how reductions in snow accumulation, expected with climate change, directly affect dynamics of soil winter frost, and indirectly soil microbial biomass and activity during the growing season. Soils from lower elevation plots, which accumulated less snow and experienced more soil temperature variability during the winter (and likely more freeze/thaw events), had less extractable inorganic nitrogen (N), lower rates of microbial N production via potential net N mineralization and nitrification, and higher potential microbial respiration during the growing season. Potential nitrate production rates during the growing season were particularly sensitive to changes in winter snow pack accumulation and winter soil temperature variability, especially in spring. Effects of elevation and winter conditions on N transformation rates differed from those on potential microbial respiration, suggesting that N-related processes might respond differently to winter climate change in northern hardwood forests than C-related processes.

  4. Measuring and modeling the variation in species-specific transpiration in temperate deciduous hardwoods.

    PubMed

    Bowden, Joseph D; Bauerle, William L

    2008-11-01

    We investigated which parameters required by the MAESTRA model were most important in predicting leaf-area-based transpiration in 5-year-old trees of five deciduous hardwood species-yoshino cherry (Prunus x yedoensis Matsum.), red maple (Acer rubrum L. 'Autumn Flame'), trident maple (Acer buergeranum Miq.), Japanese flowering cherry (Prunus serrulata Lindl. 'Kwanzan') and London plane-tree (Platanus x acerifolia (Ait.) Willd.). Transpiration estimated from sap flow measured by the heat balance method in branches and trunks was compared with estimates predicted by the three-dimensional transpiration, photosynthesis and absorbed radiation model, MAESTRA. MAESTRA predicted species-specific transpiration from the interactions of leaf-level physiology and spatially explicit micro-scale weather patterns in a mixed deciduous hardwood plantation on a 15-min time step. The monthly differences between modeled mean daily transpiration estimates and measured mean daily sap flow ranged from a 35% underestimation for Acer buergeranum in June to a 25% overestimation for A. rubrum in July. The sensitivity of the modeled transpiration estimates was examined across a 30% error range for seven physiological input parameters. The minimum value of stomatal conductance as incident solar radiation tends to zero was determined to be eight times more influential than all other physiological model input parameters. This work quantified the major factors that influence modeled species-specific transpiration and confirmed the ability to scale leaf-level physiological attributes to whole-crown transpiration on a species-specific basis.

  5. Reforestation of bottomland hardwoods and the issue of woody species diversity

    USGS Publications Warehouse

    Allen, J.A.

    1997-01-01

    Bottomland hardwood forests in the southcentral United States have been cleared extensively for agriculture, and many of the remaining forests are fragmented and degraded. During the last decade, however, approximately 75,000 ha of land-mainly agricultural fields-have been replanted or contracted for replanting, with many more acres likely to be reforested in the near future. The approach used in most reforestation projects to date has been to plant one to three overstory tree species, usually Quercus spp. (oaks), and to rely on natural dispersal for the establishment of other woody species. I critique this practice by two means. First, a brief literature review demonstrates that moderately high woody species diversity occurs in natural bottomland hardwood forests in the region. This review, which relates diversity to site characteristics, serves as a basis for comparison with stands established by means of current reforestation practices. Second, I reevaluate data on the invasion of woody species from an earlier study of 10 reforestation projects in Mississippi,with the goal of assessing the likelihood that stands with high woody species diversity will develop. I show that natural invasion cannot always be counted on to produce a diverse stand, particularly on sites more than about 60 m from an existing forest edge. I then make several recommendations for altering current reforestation pactices in order to establish stands with greater woody species diversity, a more natural appearance,and a more positive environmental impact at scales larger than individual sites.

  6. Seasonal Patterns of Denitrification and Trace Gas Emissions in a Northern Hardwood Forest

    NASA Astrophysics Data System (ADS)

    Morse, J. L.; Durán, J.; Groffman, P. M.

    2012-12-01

    To determine denitrification rates and trace gas emissions in a northern hardwood forest (Hubbard Brook Experimental Forest, New Hampshire, USA), we conducted two years of seasonal chamber-based field gas flux measurements (carbon dioxide, methane, and nitrous oxide) and laboratory incubations to measure denitrification rates (nitrous oxide and dinitrogen) and carbon dioxide fluxes. We examined spatial and temporal dynamics of soil-atmosphere gas fluxes as well as relationships between environmental variables (soil moisture, soil temperature, and soil oxygen) and among the different gases. We found that denitrification in surface soils could be an important pathway for nitrogen loss in northern hardwood forest ecosystems, even if soils are rarely anoxic. While dinitrogen fluxes were particularly high during the snowmelt period, we did not see a pulse of nitrous oxide as a result of rapid soil warming as we had expected. Compared to cooler/wetter sites, we found that warmer/drier soils had higher soil respiration in early spring, but had stronger methane uptake and consistently lower nitrous oxide emissions throughout the year.

  7. Relative abundance and species richness of cerambycid beetles in partial cut and uncut bottomland hardwood forests

    USGS Publications Warehouse

    Newell, P.; King, S.

    2009-01-01

    Partial cutting techniques are increasingly advocated and used to create habitat for priority wildlife. However, partial cutting may or may not benefit species dependent on deadwood; harvesting can supplement coarse woody debris in the form of logging slash, but standing dead trees may be targeted for removal. We sampled cerambycid beetles during the spring and summer of 2006 and 2007 with canopy malaise traps in 1- and 2-year-old partial cut and uncut bottomland hardwood forests of Louisiana. We captured a total of 4195 cerambycid beetles representing 65 species. Relative abundance was higher in recent partial cuts than in uncut controls and with more dead trees in a plot. Total species richness and species composition were not different between treatments. The results suggest partial cuts with logging slash left on site increase the abundance of cerambycid beetles in the first few years after partial cutting and that both partial cuts and uncut forest should be included in the bottomland hardwood forest landscape.

  8. Influences of Hardwood Riparian Vegetation on Stream Channel Geometry in Eastern Forested Environments

    NASA Astrophysics Data System (ADS)

    Cohen, L. J.; Furbish, D. J.

    2015-12-01

    Riparian vegetation has been recognized as a controlling factor of stream channel morphology, but specific influences on bed topography and planform geometry are yet to be fully clarified. In temperate environments, hardwood trees serve as prominent bank stabilizers and help create diverse habitats for a variety of aquatic organisms in alluvial channels. This project explores the influence of riparian vegetation on channel geometry in alluvial streams of different sizes. Exposed rootwads increase bank stability and slow channel migration rates, but also cause pool scour that affects thalweg and bedform locations downstream, implying that woody riparian vegetation influences flow conditions and two-dimensional bed geometry in alluvial streams. Field data suggest that the presence of hardwood vegetation modulates channel width, bed topography and planform geometry in low-order streams. In larger channels, rootwads have less influence on planform curvature, but create patchy variations in bed topography that establish thalweg locations and amplify relief of curvature-dominated bedforms. Flume experiments illustrate the genesis of rootwad-induced pool scour and its effect on downstream pool and bar formation. Experimental rootwad pools reflect the relative size and shape of those observed in natural channels. Introduction of riparian obstructions to planar beds also influences thalweg location several channel widths downstream, further supporting the idea of riparian influence on bedform modulation and regulation.

  9. Biology and management of insect pests in North American intensively managed hardwood forest systems.

    SciTech Connect

    Coyle, David R.; Nebeker, T., E.; Hart, E., R.; Mattson, W., J.

    2005-01-01

    Annu. Rev. Entomol. 50:1-29. Abstract Increasing demand for wood and wood products is putting stress on traditional forest production areas, leading to long-term economic and environmental concerns. Intensively managed hardwood forest systems (IMHFS), grown using conventional agricultural as well as forestry methods, can help alleviate potential problems in natural forest production areas. Although IMHFS can produce more biomass per hectare per year than natural forests, the ecologically simplified, monocultural systems may greatly increase the crops susceptibility to pests. Species in the genera Populus and Salix comprise the greatest acreage in IMHFS in North America, but other species, including Liquidambar styracifua and Platanus occidentalis, are also important. We discuss life histories, realized and potential damage, and management options for the most economically infuential pests that affect these hardwood species. The substantial inherent challenges associated with pest management in the monocultural environments created by IMHFS are reviewed. Finally, we discuss ways to design IMHFS that may reduce their susceptibility to pests, increase their growth and productivity potential, and create a more sustainable environment.

  10. Biomass and nutrient removals from commercial thinning and whole-tree clearcutting of central hardwoods

    NASA Astrophysics Data System (ADS)

    Tritton, Louise M.; Martin, C. Wayne; Hornbeck, James W.; Pierce, Robert S.

    1987-09-01

    The objective of this research was to evaluate the impacts of increasing product removal on biomass and nutrient content of a central hardwood forest ecosystem. Commercial thinning, currently the most common harvesting practice in southern New England, was compared with whole-tree clearcutting or maximum aboveground utilization. Using a paired-watershed approach, we studied three adjacent, first-order streams in Connecticut. During the winter of 1981 82, one was whole-tree clearcut, one was commercially thinned, and one was designated as the untreated reference. Before treatment, living and dead biomass and soil on the whole-tree clearcut site contained 578 Mg ha-1 organic matter, 5 Mg ha-1 nitrogen, 1 Mg ha-1 phosphorus, 5 Mg ha-1 potassium, 4 Mg ha-1 calcium, and 13 Mg ha-1 magnesium. An estimated 158 Mg ha-1 (27% of total organic matter) were removed during the whole-tree harvest. Calcium appeared to be the nutrient most susceptible to depletion with 13% of total site Ca removed in whole-tree clearcut products. In contrast, only 4% (16 Mg ha-1) of the total organic matter and ⩽2% of the total nutrients were removed from the thinned site. Partial cuts appear to be a reliable management option, in general, for minimizing nutrient depletion and maximizing long-term productivity of central hardwood sites. Additional data are needed to evaluate the long-term impacts of more intensive harvests.

  11. Effects of canopy gaps and flooding on homopterans in a bottomland hardwood forest

    USGS Publications Warehouse

    Gorham, L.E.; King, S.L.; Keeland, B.D.; Mopper, S.

    2002-01-01

    Canopy disturbance is a major factor affecting forest structure and composition and, as a result of habitat alterations, can influence insect communities. We initiated a field study to quantify the effects of canopy disturbance on aerial insect abundance and distribution within a bottomland hardwood forest along the Cache River, Arkansas, USA. We used passive flight-intercept traps to sample insects in canopy gap and forest interior habitats from May to July in 1996, 1997, and 1998. The hydrologic conditions of our study site varied among years: 1996 was relatively dry, 1997 incurred a long-duration flood, and 1998 was moderately wet. Of the 34,000+ Homopterans collected, many groups were distributed in a non-uniform manner among years and between habitats. Total Homopterans, two families of Homopterans, and six morphospecies were more abundant in canopy gaps than interior forest. Many Homopteran taxa were least abundant in 1997 following almost six months of flooding. Alternatively, relatively large Homopteran abundances were associated with the dry conditions of 1996 and the moderately wet conditions of 1998. Differences in Homopteran abundance among years and habitats may be related to differences in vegetation density. Canopy gaps supported more vegetation cover than the interior forest in all but the first sampling interval. In addition, similar to Homopteran abundance, vegetation density was lower in 1997 than in 1998. These results demonstrate that natural disturbance and flooding contribute to Homopteran abundance and distribution patterns in bottomland hardwood forests of the south central United States. ?? 2002, The Society of Wetland Scientists.

  12. Assessment of the role of bottomland hardwoods in sediment and erosion control

    USGS Publications Warehouse

    Molinas, A.; Auble, Gregor T.; Segelquist, C.A.; Ischinger, Lee S.

    1988-01-01

    Drainage and clearing of bottomland hardwoods have long been recognized by the U.S. Environmental Protection Agency (EPA) and the U.S. Fish and Wildlife Service (Service) as important impacts of Federal water projects in the lower Mississippi River Valley. More recently, the water quality impacts of such projects (e.g., increases in sediments, nutrients, and pesticides) have also become of concern. In 1984, in an effort to better define problems concerning wetland losses and water degradation, EPA initiated a cooperative project with the Western Energy and Land Use Team (now the National Ecology Research Center) of the Service. Three phases of the project were identified: 1. To collect existing literature and data; 2. To select, develop, and test the utility of methods to quantify the relationships between land use, cover types, soils, hydrology, and water quality (as represented by sediment); and 3. To apply selected methodologies to several sites within the Yazoo Basin of Mississippi to determine the, potential effectiveness of various management alternatives to reduce sediment yield, increase sediment deposition, and improve water quality. Methods development focused on linking a simulation of water and sediment movement to a computerized geographic information system. We had several objectives for the resulting model. We desired that it should: 1. Estimate the importance of bottomland and hardwoods as a cover type that performs the functions of erosion and sediment control, 2. Simulate effects of proportions of ' various cover types and their specific spatial configurations, 3. Be applicable to moderately large spatial areas with minimal site-specific calibration, 4. Simulate spatial patterns of sediment loss-gain over time, and 5. Represent both sediment detachment and transport. While it was recognized that impacts and management alternatives could be sorted roughly into landscape measures and channel measures, the decision was made to focus study efforts

  13. Identification and Evaluation of Strain B37 of Bacillus subtilis Antagonistic to Sapstain Fungi on Poplar Wood

    PubMed Central

    Zhang, XiaoHua; Zhao, GuiHua; Li, DeWei; Li, ShunPeng; Hong, Qing

    2014-01-01

    Devaluation of poplar products by sapstain accounts for huge and unpredictable losses each year in China. We had isolated four poplar sapstain fungi, Ceratocystis adiposa Hz91, Lasiodiplodia theobromae YM0737, L. theobromae Fx46, and Fusarium sp. YM05, from five poplar varieties and 13 antagonistic bacteria from nine diverse varieties. After being experimented with agar plates, wood chips, and enzyme activities, strain B37 was identified as the best poplar sapstain biocontrol bacterium. The strain B37 was identified as Bacillus subtilis using sequences of the 16S rRNA gene, physiological biochemical, and morphological characteristics. PMID:25401124

  14. Identification and evaluation of strain B37 of Bacillus subtilis antagonistic to sapstain fungi on poplar wood.

    PubMed

    Zhang, XiaoHua; Zhao, GuiHua; Li, DeWei; Li, ShunPeng; Hong, Qing

    2014-01-01

    Devaluation of poplar products by sapstain accounts for huge and unpredictable losses each year in China. We had isolated four poplar sapstain fungi, Ceratocystis adiposa Hz91, Lasiodiplodia theobromae YM0737, L. theobromae Fx46, and Fusarium sp. YM05, from five poplar varieties and 13 antagonistic bacteria from nine diverse varieties. After being experimented with agar plates, wood chips, and enzyme activities, strain B37 was identified as the best poplar sapstain biocontrol bacterium. The strain B37 was identified as Bacillus subtilis using sequences of the 16S rRNA gene, physiological biochemical, and morphological characteristics. PMID:25401124

  15. Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae).

    PubMed

    Huang, Daisie I; Hefer, Charles A; Kolosova, Natalia; Douglas, Carl J; Cronk, Quentin C B

    2014-11-01

    As molecular phylogenetic analyses incorporate ever-greater numbers of loci, cases of cytonuclear discordance - the phenomenon in which nuclear gene trees deviate significantly from organellar gene trees - are being reported more frequently. Plant examples of topological discordance, caused by recent hybridization between extant species, are well known. However, examples of branch-length discordance are less reported in plants relative to animals. We use a combination of de novo assembly and reference-based mapping using short-read shotgun sequences to construct a robust phylogeny of the plastome for multiple individuals of all the common Populus species in North America. We demonstrate a case of strikingly high plastome divergence, in contrast to little nuclear genome divergence, in two closely related balsam poplars, Populus balsamifera and Populus trichocarpa (Populus balsamifera ssp. trichocarpa). Previous studies with nuclear loci indicate that the two species (or subspecies) diverged since the late Pleistocene, whereas their plastomes indicate deep divergence, dating to at least the Pliocene (6-7 Myr ago). Our finding is in marked contrast to the estimated Pleistocene divergence of the nuclear genomes, previously calculated at 75 000 yr ago, suggesting plastid capture from a 'ghost lineage' of a now-extinct North American poplar. PMID:25078531

  16. Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae).

    PubMed

    Huang, Daisie I; Hefer, Charles A; Kolosova, Natalia; Douglas, Carl J; Cronk, Quentin C B

    2014-11-01

    As molecular phylogenetic analyses incorporate ever-greater numbers of loci, cases of cytonuclear discordance - the phenomenon in which nuclear gene trees deviate significantly from organellar gene trees - are being reported more frequently. Plant examples of topological discordance, caused by recent hybridization between extant species, are well known. However, examples of branch-length discordance are less reported in plants relative to animals. We use a combination of de novo assembly and reference-based mapping using short-read shotgun sequences to construct a robust phylogeny of the plastome for multiple individuals of all the common Populus species in North America. We demonstrate a case of strikingly high plastome divergence, in contrast to little nuclear genome divergence, in two closely related balsam poplars, Populus balsamifera and Populus trichocarpa (Populus balsamifera ssp. trichocarpa). Previous studies with nuclear loci indicate that the two species (or subspecies) diverged since the late Pleistocene, whereas their plastomes indicate deep divergence, dating to at least the Pliocene (6-7 Myr ago). Our finding is in marked contrast to the estimated Pleistocene divergence of the nuclear genomes, previously calculated at 75 000 yr ago, suggesting plastid capture from a 'ghost lineage' of a now-extinct North American poplar.

  17. Herbage production, nutritive value, and animal productivity within hardwood silvopasture, open and mixed pasture systems in Appalachia, United States

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Demand for livestock food products are projected to increase dramatically through 2050. Increased livestock production capacity on marginal lands will be critical to meeting demand. A 5-year research effort was undertaken to evaluate lamb and sward productivity within open and hardwood silvopasture ...

  18. Development of red oak seedlings using plastic shelters on hardwood sites in West Virginia. Forest Service research paper (Final)

    SciTech Connect

    Smith, H.C.

    1993-04-01

    Plastic shelters were used to grow red oak seedlings on good-to-excellent Appalachian hardwood growing sites in north central West Virginia. Preliminary results indicate that shelters have the potential to stimulate development of red oak seedlingheight growth, especially if height growth continues once the seedling tops are above the 5-foot-tall shelters.

  19. Effect of liquid hot water pretreatment severity on properties of hardwood lignin and enzymatic hydrolysis of cellulose.

    PubMed

    Ko, Ja Kyong; Kim, Youngmi; Ximenes, Eduardo; Ladisch, Michael R

    2015-02-01

    Lignin, one of the major components of lignocellulosic biomass, plays an inhibitory role on the enzymatic hydrolysis of cellulose. This work examines the role of lignin in pretreated hardwood, where extents of cellulose hydrolysis decrease, rather than increase with increasing severity of liquid hot water pretreatment. Hardwood pretreated with liquid hot water at severities ranging from log Ro  = 8.25 to 12.51 resulted in 80-90% recovery of the initial lignin in the residual solids. The ratio of acid insoluble lignin (AIL) to acid soluble lignin (ASL) increased and the formation of spherical lignin droplets on the cell wall surface was observed as previously reported in the literature. When lignins were isolated from hardwoods pretreated at increasing severities and characterized based on glass transition temperature (Tg ), the Tg of isolated lignins was found to increase from 171 to 180°C as the severity increased from log Ro  = 10.44 to 12.51. The increase in Tg suggested that the condensation reactions of lignin molecules occurred during pretreatment and altered the lignin structure. The contribution of the changes in lignin properties to enzymatic hydrolysis were examined by carrying out Avicel hydrolysis in the presence of isolated lignins. Lignins derived from more severely pretreated hardwoods had higher Tg values and showed more pronounced inhibition of enzymatic hydrolysis.

  20. An Integrated Functional Genomics Consortium to Increase Carbon Sequestration in Poplars: Optimizing Aboveground Carbon Gain

    SciTech Connect

    Karnosky, David F; Podila, G Krishna; Burton, Andrew J

    2009-02-17

    This project used gene expression patterns from two forest Free-Air CO2 Enrichment (FACE) experiments (Aspen FACE in northern Wisconsin and POPFACE in Italy) to examine ways to increase the aboveground carbon sequestration potential of poplars (Populus). The aim was to use patterns of global gene expression to identify candidate genes for increased carbon sequestration. Gene expression studies were linked to physiological measurements in order to elucidate bottlenecks in carbon acquisition in trees grown in elevated CO2 conditions. Delayed senescence allowing additional carbon uptake late in the growing season, was also examined, and expression of target genes was tested in elite P. deltoides x P. trichocarpa hybrids. In Populus euramericana, gene expression was sensitive to elevated CO2, but the response depended on the developmental age of the leaves. Most differentially expressed genes were upregulated in elevated CO2 in young leaves, while most were downregulated in elevated CO2 in semi-mature leaves. In P. deltoides x P. trichocarpa hybrids, leaf development and leaf quality traits, including leaf area, leaf shape, epidermal cell area, stomatal number, specific leaf area, and canopy senescence were sensitive to elevated CO2. Significant increases under elevated CO2 occurred for both above- and belowground growth in the F-2 generation. Three areas of the genome played a role in determining aboveground growth response to elevated CO2, with three additional areas of the genome important in determining belowground growth responses to elevated CO2. In Populus tremuloides, CO2-responsive genes in leaves were found to differ between two aspen clones that showed different growth responses, despite similarity in many physiological parameters (photosynthesis, stomatal conductance, and leaf area index). The CO2-responsive clone shunted C into pathways associated with active defense/response to stress, carbohydrate/starch biosynthesis and subsequent growth. The CO2

  1. Health Hazard Evaluation Report HETA 82-234-1602, Black River Hardwood Company, Kingstree, South Carolina

    SciTech Connect

    Salisbury, S.; Lybarger, J.

    1985-06-01

    A health-hazard evaluation was conducted at Black River Hardwood Company, Kingstree, South Carolina in July, 1982. The evaluation was requested by the owner to investigate a possible excess of cancer among employees. There was concern that the company's water supply had been contaminated by agricultural chemicals buried in an adjacent lot in 1974. Environmental sampling data at the disposal site obtained by the South Carolina Department of Health and Environmental Control (DHEC) were reviewed. The cancer cases involved the stomach, gastrointestinal tract, lungs, and head and neck. The authors conclude that a cancer hazard among the employees does not exist. They recommend continued monitoring of the company and community water supply and using bottled drinking water until a municipal water system is available.

  2. Sulfite pretreatment to overcome recalcitrance of lignocellulose (SPORL) for robust enzymatic saccharification of hardwoods.

    PubMed

    Wang, G S; Pan, X J; Zhu, J Y; Gleisner, R; Rockwood, D

    2009-01-01

    This study demonstrates sulfite pretreatment to overcome recalcitrance of lignocellulose (SPORL) for robust bioconversion of hardwoods. With only about 4% sodium bisulfite charge on aspen and 30-min pretreatment at temperature 180 degrees C, SPORL can achieve near-complete cellulose conversion to glucose in a wide range of pretreatment liquor of pH 2.0-4.5 in only about 10 h enzymatic hydrolysis. The enzyme loading was about 20 FPU cellulase plus 30 CBU beta-glucosidase per gram of cellulose. The production of fermentation inhibitor furfural was less than 20 mg/g of aspen wood at pH 4.5. With pH 4.5, SPORL avoided reactor corrosion problem and eliminated the need for substrate neutralization prior to enzymatic hydrolysis. Similar results were obtained from maple and eucalyptus.

  3. Production of furfural from waste aqueous hemicellulose solution of hardwood over ZSM-5 zeolite.

    PubMed

    Gao, Hongling; Liu, Haitang; Pang, Bo; Yu, Guang; Du, Jian; Zhang, Yuedong; Wang, Haisong; Mu, Xindong

    2014-11-01

    This study aimed to produce furfural from waste aqueous hemicellulose solution of a hardwood kraft-based dissolving pulp production processing in a green method. The maximum furfural yield of 82.4% and the xylose conversion of 96.8% were achieved at 463K, 1.0g ZSM-5, 1.05g NaCl and organic solvent-to-aqueous phase ratio of 30:15 (V/V) for 3h. The furfural yield was just 51.5% when the same concentration of pure xylose solution was used. Under the optimized condition, furfural yield was still up to 67.1% even after the fifth reused of catalyst. Catalyst recycling study showed that ZSM-5 has a certain stability and can be efficiently reused. PMID:25266687

  4. Production of furfural from waste aqueous hemicellulose solution of hardwood over ZSM-5 zeolite.

    PubMed

    Gao, Hongling; Liu, Haitang; Pang, Bo; Yu, Guang; Du, Jian; Zhang, Yuedong; Wang, Haisong; Mu, Xindong

    2014-11-01

    This study aimed to produce furfural from waste aqueous hemicellulose solution of a hardwood kraft-based dissolving pulp production processing in a green method. The maximum furfural yield of 82.4% and the xylose conversion of 96.8% were achieved at 463K, 1.0g ZSM-5, 1.05g NaCl and organic solvent-to-aqueous phase ratio of 30:15 (V/V) for 3h. The furfural yield was just 51.5% when the same concentration of pure xylose solution was used. Under the optimized condition, furfural yield was still up to 67.1% even after the fifth reused of catalyst. Catalyst recycling study showed that ZSM-5 has a certain stability and can be efficiently reused.

  5. The response of beetles to group selection harvesting in a southeastern bottomland hardwood forest.

    SciTech Connect

    Ulyshen, Michael, D.

    2005-04-01

    ABSTRACT The environmental protection and sustainable management of our remaining forests are increasingly important concerns. Group selection harvesting is an uneven-aged forest management practice that removes patches of desirable trees to create small openings mimicking natural disturbances. To determine the effects of this technique on beetles, malaise and pitfall traps were placed at the center, edge, and in the forest surrounding artificially created gaps of different size (0.13, 0.26, and 0.50 ha) and age (1 and 7 years) in a South Carolina bottomland hardwood forest. Beetles were generally more abundant and species rich in the centers of younger gaps than in the centers of older gaps or in the forest surrounding them. There were relatively few differences in the abundance and richness of beetles between old gaps and the surrounding forest but species composition differed considerably. These differences may be explained by the uneven distribution of various resources.

  6. Structure-function relationships in hardwood--insight from micromechanical modelling.

    PubMed

    de Borst, K; Bader, T K

    2014-03-21

    A micromechanical model is presented that predicts the stiffness of wood tissues in their three principal anatomical directions, across various hardwood species. The wood polymers cellulose, hemicellulose, and lignin, common to all wood tissues, serve as the starting point. In seven homogenisation steps, the stiffnesses of these polymers are linked to the macroscopic stiffness. The good agreement of model predictions and corresponding experimental data for ten different European and tropical species confirms the functionality and accuracy of the model. The model enables investigating the influence of individual microstructural features on the overall stiffness. This is exploited to elucidate the mechanical effects of vessels and ray cells. Vessels are shown to reduce the stiffness of wood at constant overall density. This supports that a trade-off exists between the hydraulic efficiency and the mechanical support in relation to the anatomical design of wood. Ray cells are shown to act as reinforcing elements in the radial direction. PMID:24365634

  7. Disruption of hardwood nutrition by sulfur dioxide, nickel, and copper air pollution near Sudbury, Canada

    SciTech Connect

    Lozano, F.C.; Morrison, I.K.

    1981-04-01

    Foilage from each of four hardwood species - white birch (Betula papyifera Marsh.), red oak (Quercus rubra L.), red maple (Acer rubrum L.), and trembling aspen (Populus tremuloides Michx.) - growing on sites severely and moderately damaged by fumes and dustfall and on control sites near Sudbury, Ontario, and soil from beneath the trees were sampled and analyzed for various chemical constituents. Results indicated that on sites damaged by fumes and dustfall, soils were impoverished with respect to organic matter content, exchangeable bases (particularly Ca and Mg), and trace elements (particularly Mn and Zn). Levels of S, Fe, Cu, and Ni were also increased. Foilage analysis provided additional support for the proposition that soils contained near toxic to toxic levels of Ni and Cu. If conditions improve, however, with respect to suppression of Ni or Cu supply, tree growth could be limited by the availability of Ca, Mg, or Mn, or even of N or P.

  8. Deconstruction of Nordic hardwood in switchable ionic liquids and acylation of the dissolved cellulose.

    PubMed

    Eta, Valerie; Mikkola, Jyri-Pekka

    2016-01-20

    Nordic hardwood (Betula pendula) was fractionated in a batch autoclave equipped with a custom-made SpinChem(®) rotating bed reactor, at 120 °C using CO2 and CS2-based switchable ionic liquids systems. Analyses of the non-dissolved wood after treatment showed that 64 wt% of hemicelluloses and 70 wt% of lignin were removed from the native wood. Long processing periods or successive short-time treatments using fresh SILs further decreased the amount of hemicelluloses and lignin in the non-dissolved fraction to 12 and 15 wt%, respectively. The cellulose-rich fraction was partially dissolved in an organic superbase and an ionic liquid system for further derivatization. Homogeneous acylation of the dissolved cellulose in the presence or absence of catalyst resulted in cellulose acetates with variable degree of substitution (DS), depending on the treatment conditions. By varying the reaction conditions, the cellulose acetate with the desired DS could be obtained under mild conditions.

  9. Nuclear DNA amounts in 112 species of tropical hardwoods -- new estimates.

    PubMed

    Ohri, D; Bhargava, A; Chatterjee, A

    2004-09-01

    The 4C DNA values of 112 species, belonging to 37 families have a range from 0.83 pg (Bixa orellana) to 15.54 pg (Thryallis angustifolia), showing a 18.72-fold variation. The genome size varies from 0.21 pg (Bixa orellana) to 3.32 (Thespesia populnea), with a 15.8-fold difference. The Bombacaceae has the minimum range (1.08-fold) of variation, while the maximum (5.0-fold) is shown by the Fabaceae. The Boraginaceae, Lauraceae, Malpighiaceae, and Malvaceae generally have higher 4C DNA values of > 10 pg, while the Bixaceae, Caricaceae, Oxalidaceae, and Santalaceae have lower values of < 2.0 pg. These data add further to our knowledge on variation in DNA amount in tropical hardwoods. PMID:15375726

  10. Dead wood relative to slope severity in mesic loess bluff hardwood forests

    USGS Publications Warehouse

    Twedt, Daniel J.

    2012-01-01

    To aid in identification of land within Vicksburg National Military Park that was subjected to forest restoration during the 1930s, I evaluated the hypothesized relationships between maximum live tree diameter or dead wood (standing and down) and severity of slope. Disproportionate mortality among early-successional, pioneer tree species suggested maturation of pioneer upland hardwood forests. As such, input and decomposition of dead wood have likely approached equilibrium. Thus, I did not detect a useful predictive relationship between dead wood (standing or down) or maximum diameter of live trees and severity of slope. Lack of relationships between slope and large diameter trees or volume of dead wood resulted in an inability to evaluate former land use based on these parameters.

  11. Abundance of green tree frogs and insects in artificial canopy gaps in a bottomland hardwood forest.

    SciTech Connect

    Horn, Scott; Hanula, James L.; Ulyshen, Michael D.; Kilgo, John C.

    2005-01-01

    Horn, Scott, James L. Hanula, Michael D. Ulyshen, and John C. Kilgo. 2005. Abundance of green tree frogs and insects in artificial canopy gaps in a bottomland hardwood forest. Am. Midl. Nat. 153:321-326. Abstract: We found more green tree frogs (Hyla cinerea) in canopy gaps than in closed canopy forest. Of the 331 green tree frogs observed, 88% were in canopy gaps. Likewise, higher numbers and biomasses of insects were captured in the open gap habitat. Flies were the most commonly collected insect group accounting for 54% of the total capture. These data suggest that one reason green tree frogs were more abundant in canopy gaps was the increased availability of prey and that small canopy gaps provide early successional habitats that are beneficial to green tree frog populations.

  12. Practical salinity management for leachate irrigation to poplar trees.

    PubMed

    Smesrud, Jason K; Duvendack, George D; Obereiner, James M; Jordahl, James L; Madison, Mark F

    2012-01-01

    Landfill leachate can be beneficially reused for irrigation of fiber crops with appropriate attention to nutrient and salinity management. The Riverbend Landfill in Western Oregon has been effectively practicing irrigation of landfill leachate to poplar trees since 1993. Over that time, the site has been adaptively managed to control salinity impacts to the tree crop while beneficially utilizing the applied water and nutrients during each growing season. Representative leachate irrigation water has ranged in concentration of total dissolved solids from 777 to 6,940 mg/L, chloride from 180 to 1,760 mg/L and boron from 3.2 to 7.3 mg/L. Annual leachate irrigation applications have also ranged between 102 and 812 mm/yr. Important conclusions from this site have included: 1) Appropriate tree clone selection and tree stand spacing, thinning, and harvest rotations are critical to maintaining a productive tree stand that is resilient and resistant to salt stress. The most effective combinations have included clones DN-34, OP-367, 184-411, 49-177, and 15-29 planted at spacing of 3.7-m x 1.8-m to 3.7-m x 3.7-m; 2) Leaf tissue boron levels are closely correlated to soil boron levels and can be managed with leaching. When leaf tissue boron levels exceed 200 to 250 mg/kg, signs of salt stress may emerge and should be monitored closely; 3) Salinity from leachate irrigation can be managed to sustain a healthy tree crop by controlling mass loading rates and providing appropriate irrigation blending if necessary. Providing freshwater irrigation following each leachate irrigation and targeting freshwater irrigation as 30 percent of total irrigation water applied has successfully controlled salt impacts to vegetation; and 4) Drip irrigation generally requires more careful attention to long-term soil salinity management than spray irrigation. Moving drip irrigation tubes periodically to prevent the formation of highly saline zones within the soil profile is important. In this paper, a

  13. Practical salinity management for leachate irrigation to poplar trees.

    PubMed

    Smesrud, Jason K; Duvendack, George D; Obereiner, James M; Jordahl, James L; Madison, Mark F

    2012-01-01

    Landfill leachate can be beneficially reused for irrigation of fiber crops with appropriate attention to nutrient and salinity management. The Riverbend Landfill in Western Oregon has been effectively practicing irrigation of landfill leachate to poplar trees since 1993. Over that time, the site has been adaptively managed to control salinity impacts to the tree crop while beneficially utilizing the applied water and nutrients during each growing season. Representative leachate irrigation water has ranged in concentration of total dissolved solids from 777 to 6,940 mg/L, chloride from 180 to 1,760 mg/L and boron from 3.2 to 7.3 mg/L. Annual leachate irrigation applications have also ranged between 102 and 812 mm/yr. Important conclusions from this site have included: 1) Appropriate tree clone selection and tree stand spacing, thinning, and harvest rotations are critical to maintaining a productive tree stand that is resilient and resistant to salt stress. The most effective combinations have included clones DN-34, OP-367, 184-411, 49-177, and 15-29 planted at spacing of 3.7-m x 1.8-m to 3.7-m x 3.7-m; 2) Leaf tissue boron levels are closely correlated to soil boron levels and can be managed with leaching. When leaf tissue boron levels exceed 200 to 250 mg/kg, signs of salt stress may emerge and should be monitored closely; 3) Salinity from leachate irrigation can be managed to sustain a healthy tree crop by controlling mass loading rates and providing appropriate irrigation blending if necessary. Providing freshwater irrigation following each leachate irrigation and targeting freshwater irrigation as 30 percent of total irrigation water applied has successfully controlled salt impacts to vegetation; and 4) Drip irrigation generally requires more careful attention to long-term soil salinity management than spray irrigation. Moving drip irrigation tubes periodically to prevent the formation of highly saline zones within the soil profile is important. In this paper, a

  14. Hardwood tree growth after eight years on brown and gray mine soils in west virginia.

    PubMed

    Wilson-Kokes, L; Emerson, P; Delong, C; Thomas, C; Skousen, J

    2013-09-01

    Surface coal mining in Appalachia disturbs hundreds of hectares of land every year with the removal of valuable and ecologically diverse eastern deciduous forests. After the passage of the Surface Mining Control and Reclamation Act in 1977, coal mine operators began planting a variety of grasses and legumes as a fast and economical way to reestablish a permanent vegetative cover to meet erosion and site stabilization requirements. However, soil compaction and competitive forage species have arrested the recolonization of native hardwood tree species on these reclaimed sites. Three 2.8-ha demonstration plots were established at Catenary Coal's Samples Mine in Kanawha County, West Virginia, of weathered brown sandstone and unweathered gray sandstone. Half of each plot was compacted. Each plot was hydroseeded with a low-competition herbaceous cover and planted with 11 hardwood tree species. After eight growing seasons, average tree volume index was nearly 10 times greater for trees grown in the brown sandstone treatments, 3853 cm, compared with 407 cm in gray sandstone. Trees growing on compacted treatments had a lower mean volume index, 2281 cm, than trees growing on uncompacted treatments, 3899 cm. Average pH of brown sandstone was 5.2 to 5.7, while gray sandstone was 7.9. The gray sandstone had much lower fine soil fraction (<2-mm) content (40%) than brown sandstone (70%), which influenced nutrient- and water-holding capacity. Brown sandstone showed significantly greater tree growth and survival and at this stage is a more suitable topsoil substitute than gray sandstone on this site.

  15. Respiratory Symptoms and Lung Function in Never-Smoking Male Workers Exposed To Hardwood Dust

    PubMed Central

    Bislimovska, Dragana; Petrovska, Sunchica; Minov, Jordan

    2015-01-01

    BACKGROUND: Results from many studies suggest that workplace exposure to organic dust may lead to adverse respiratory effects in exposed workers. AIM: In order to assess the respiratory effects of the workplace exposure to hardwood dust we performed a cross-sectional study of never-smoking male workers employed in parquet manufacture and never-smoking male office workers as a control. MATERIAL AND METHODS: We performed a cross-sectional study including 37 never-smoking male workers employed in parquet manufacture and an equal number of never-smoking male office workers studied as a control. Evaluation of examined subjects included completion of a questionnaire for respiratory symptoms in the last 12 months and baseline spirometry performed according to the actual recommendations. RESULTS: We found a higher prevalence of respiratory symptoms in parquet manufacturers than in office workers with significant difference for cough and phlegm. Majority of the respiratory symptoms in the parquet manufacturers were work-related. The mean values of all spirometric parameters with exception of forced ventilatory capacity (FVC) were significantly lower in the parquet manufacturers as compared to their mean values in the office workers. We found close relationship between both the prevalence of respiratory symptoms and the reduction of spirometric parameters in the parquet manufacturers and the duration of the workplace exposure to wood dust. CONCLUSION: Our data suggest that workplace exposure to hardwood dust may lead to adverse respiratory effects indicating the need of adequate preventive measures in order to protect the respiratory health of exposed workers. PMID:27275278

  16. The importance of hydrology in restoration of bottomland hardwood wetland functions

    USGS Publications Warehouse

    Hunter, R.G.; Faulkner, S.P.; Gibson, K.A.

    2008-01-01

    Bottomland hardwood (BLH) forests have important biogeochemical functions and it is well known that certain structural components, including pulsed hydrology, hydric soils, and hydrophytic vegetation, enhance these functions. It is unclear, however, how functions of restored BLH wetlands compare to mature, undisturbed wetlands. We measured a suite of structural and functional attributes in replicated natural BLH wetlands (NAT), restored BLH wetlands with hydrology re-established (RWH), and restored BLH wetlands without hydrology re-established (RWOH) in this study. Trees were replanted in all restored wetlands at least four years prior to the study and those wetlands with hydrology re-established had flashboard risers placed in drainage ditches to allow seasonal surface flooding. Vegetation, soils, and selected biogeochemical functions were characterized at each site. There was a marked difference in woody vegetation among the wetlands that was due primarily to site age. There was also a difference in herbaceous vegetation among the restored sites that may have been related to differences in age or hydrology. Water table fluctuations of the RWH wetlands were comparable to those of the NAT wetlands. Thus, placing flashboard risers in existing drainage ditches, along with proper management, can produce a hydroperiod that is similar to that of a relatively undisturbed BLH. Average length of saturation within the upper 15 cm of soils was 37, 104, and 97 days for RWOH, RWH, and NAT, respectively. Soil moisture, denitrification potential, and soluble organic carbon concentrations differed among wetland sites, but soil carbon and nitrogen concentrations, heterotrophic microbial activity, and readily mineralizable carbon concentrations did not. Significant linear relationships were also found between soil moisture and heterotrophic microbial activity, readily mineralizable carbon, and soluble organic carbon. In addition, sedimentation rates were higher in NAT and RWH

  17. Ground-water-flow conditions within a bottomland hardwood wetland, Eastern Arkansas

    USGS Publications Warehouse

    Gonthier, G.J.

    1996-01-01

    Water levels were measured monthly at 9 staff gages and 35 wells along two transects within the Black Swamp bottomland hardwood wetland and perpendicular to the Cache River in eastern Arkansas from December 1989 to September 1992 in order to (1) describe the ground-water-flow conditions at locations within a bottomland hardwood wetland and (2) determine the relation between the frequency of different ground-water-flow conditions and physical characteristics within the wetland. Three ground-water-flow conditions predominated at various times in the Black Swamp: (1) discharge of water from the alluvial aquifer to the wetland, (2) recharge of water from the wetland into the alluvial aquifer, and (3) flow of water from the wetland into the alluvial aquifer and then to the nearby Cache River (local flow). Analyses of hydraulic head differences between surface and ground water indicate that discharge occurred 31% of the measurement times at both transects. Recharge occurred 39% of the measurement times and tended to occur more often at locations that are far from the Cache River and that overlie low ground-water levels in the lower part of the alluvial aquifer. Local ground-water flow occurred 28% of the measurement times and tended to occur more often at locations close to the Cache River. Ground-water pumpage results in water-level declines in the lower part of the alluvial aquifer near the Black Swamp wetland. When compared with an area not affected by pumping, these lower ground-water levels increased the frequency of recharge of Black Swamp water into the alluvial aquifer by nearly a factor of 7, decreased the frequency of local ground-water flow to the Cache River to less than half, and decreased the frequency of discharge by about 22%.

  18. Ecotone resilience in a coastal system of mangroves and hardwood hammocks

    NASA Astrophysics Data System (ADS)

    Turtora, M.; DeAngelis, D. L.; Teh, S. Y.; Jiang, J.

    2013-12-01

    Initial sea-level rise effects on low-lying coastline vegetation will likely result from an increase in the frequency and magnitude of storm surges. Feedbacks between vegetation and vadose zone pore-water salinity likely result in complex interactions between halophytic and glycophytic vegetation due to differential adaptive responses. In coastal Everglades National Park, relatively impermeable marl soils distributed in a ridge and swale topography overlie highly permeable karst limestone saturated with high salinity water. Soil salinity dynamics reflect pronounced rainfall seasonality. A model of MANgrove and hardwood HAMmock competition (MANHAM) has been integrated with a variable density Saturated/Unsaturated groundwater TRAnsport model (SUTRA). The combined model (MANTRA) is being used to estimate likely vegetative responses to various scenarios of changing sea-level and precipitation patterns. The mangrove/hammock regime is characterized by the occurrence of sharp ecotones over relatively shallow elevation gradients that may be maintained by a vegetation switch. A disturbance such as an input of salinity from a storm surge could upset this meta-stable boundary, leading to a regime shift of halophytic vegetation inland. MANTRA allows simulation of the interaction of vegetation with subsurface salinity dynamics while examining the sensitivity of the vegetation switch to relevant variables. The response of the halophyte/glycophyte system to storm surge overwash is predicted to depend on factors such as amount and duration of the salinity increase in the soil, the water-table elevation and salinity of the groundwater, the amount and timing of precipitation, runoff and infiltration, the extent of wind induced storm damage, and the amount of mangrove propagules that are washed into the hardwood hammock. In addition, direct mortality of hammock vegetation and increasing floating dispersal of mangrove propagules due to storm surge increase the likelihood of a regime

  19. Research on the pyrolysis of hardwood in an entrained bed process development unit

    SciTech Connect

    Kovac, R.J.; Gorton, C.W.; Knight, J.A.; Newman, C.J.; O'Neil, D.J. . Research Inst.)

    1991-08-01

    An atmospheric flash pyrolysis process, the Georgia Tech Entrained Flow Pyrolysis Process, for the production of liquid biofuels from oak hardwood is described. The development of the process began with bench-scale studies and a conceptual design in the 1978--1981 timeframe. Its development and successful demonstration through research on the pyrolysis of hardwood in an entrained bed process development unit (PDU), in the period of 1982--1989, is presented. Oil yields (dry basis) up to 60% were achieved in the 1.5 ton-per-day PDU, far exceeding the initial target/forecast of 40% oil yields. Experimental data, based on over forty runs under steady-state conditions, supported by material and energy balances of near-100% closures, have been used to establish a process model which indicates that oil yields well in excess of 60% (dry basis) can be achieved in a commercial reactor. Experimental results demonstrate a gross product thermal efficiency of 94% and a net product thermal efficiency of 72% or more; the highest values yet achieved with a large-scale biomass liquefaction process. A conceptual manufacturing process and an economic analysis for liquid biofuel production at 60% oil yield from a 200-TPD commercial plant is reported. The plant appears to be profitable at contemporary fuel costs of $21/barrel oil-equivalent. Total capital investment is estimated at under $2.5 million. A rate-of-return on investment of 39.4% and a pay-out period of 2.1 years has been estimated. The manufacturing cost of the combustible pyrolysis oil is $2.70 per gigajoule. 20 figs., 87 tabs.

  20. Effects of earthworm invasion on plant species richness in northern hardwood forests.

    PubMed

    Holdsworth, Andrew R; Frelich, Lee E; Reich, Peter B

    2007-08-01

    The invasion of non-native earthworms (Lumbricus spp.) into a small number of intensively studied stands of northern hardwood forest has been linked to declines in plant diversity and the local extirpation of one threatened species. It is unknown, however, whether these changes have occurred across larger regions of hardwood forests, which plant species are most vulnerable, or with which earthworm species such changes are associated most closely. To address these issues we conducted a regional survey in the Chippewa and Chequamegon national forests in Minnesota and Wisconsin (U.S.A.), respectively. We sampled earthworms, soils, and vegetation, examined deer browse in 20 mature, sugar-maple-dominated forest stands in each national forest, and analyzed the relationship between invasive earthworms and vascular plant species richness and composition. Invasion by Lumbricus was a strong indicator of reduced plant richness in both national forests. The mass of Lumbricus juveniles was significantly and negatively related to plant-species richness in both forests. In addition, Lumbricus was a significant factor affecting plant richness in a full model that included multiple variables. In the Chequamegon National Forest earthworm mass was associated with higher sedge cover and lower cover of sugar maple seedlings and several forb species. The trends were similar but not as pronounced in Chippewa, perhaps due to lower deer densities and different earthworm species composition. Our results provide regional evidence that invasion by Lumbricus species may be an important mechanism in reduced plant-species richness and changes in plant communities in mature forests dominated by sugar maples.

  1. Enantioselective Transport and Biotransformation of Chiral Hydroxylated Metabolites of Polychlorinated Biphenyls in Whole Poplar Plants

    PubMed Central

    2015-01-01

    Hydroxylated metabolites of polychlorinated biphenyls (OH-PCBs) have been found to be ubiquitous in the environment due to the oxidative metabolism of their parent PCBs. With more polarity, OH-PCBs may be more toxic and mobile than their parent compounds. However, the behavior and fate of OH-PCBs have been neglected in the environment because they are not the original contaminants. Some of these hydroxylated metabolites are chiral, and chiral compounds can be used to probe biological metabolic processes. Therefore, chiral OH-PCBs were selected to study their uptake, translocation, transformation, and enantioselectivity in plants in this work. Poplars (Populus deltoides × nigra, DN34), a model plant with complete genomic sequence, were hydroponically exposed to 5-hydroxy-2,2′,3,4′,6-pentachlorobiphenyl (5-OH-PCB91) and 5-hydroxy-2,2′,3,5′,6-pentachlorobiphenyl (5-OH-PCB95) for 10 days. Chiral 5-OH-PCB91 and 5-OH-PCB95 were clearly shown to be sorbed, taken up, and translocated in whole poplars, and they were detected in various tissues of whole poplars. However, the enantioselectivity of poplar for 5-OH-PCB91 and 5-OH-PCB95 proved to be quite different. The second-eluting enantiomer of OH-PCB95, separated on a chiral column (Phenomenex Lux Cellulose-1), was enantioselectively removed in whole poplar. Enantiomeric fractions in the middle xylem, top bark, top xylem, and stem, reached 0.803 ± 0.022, 0.643 ± 0.110, 0.835 ± 0.087, and 0.830 ± 0.029, respectively. Therefore, 5-OH-PCB95 was significantly enantioselectively biotransformed inside poplar tissues, in contrast to nearly racemic mixtures of 5-OH-PCB95 remaining in hydroponic solutions. Unlike 5-OH-PCB95, 5-OH-PCB91 remained nearly racemic in most tissues of whole poplars during 10 day exposure, suggesting the enantiomers of 5-OH-PCB91 were equally transported and metabolized in whole poplars. This is the first evidence of enantioselectivity of chiral OH-PCBs and suggests that poplars can

  2. Poplar-Root Knot Nematode Interaction: A Model for Perennial Woody Species.

    PubMed

    Baldacci-Cresp, Fabien; Sacré, Pierre-Yves; Twyffels, Laure; Mol, Adeline; Vermeersch, Marjorie; Ziemons, Eric; Hubert, Philippe; Pérez-Morga, David; El Jaziri, Mondher; de Almeida Engler, Janice; Baucher, Marie

    2016-07-01

    Plant root-knot nematode (RKN) interaction studies are performed on several host plant models. Though RKN interact with trees, no perennial woody model has been explored so far. Here, we show that poplar (Populus tremula × P. alba) grown in vitro is susceptible to Meloidogyne incognita, allowing this nematode to penetrate, to induce feeding sites, and to successfully complete its life cycle. Quantitative reverse transcription-polymerase chain reaction analysis was performed to study changes in poplar gene expression in galls compared with noninfected roots. Three genes (expansin A, histone 3.1, and asparagine synthase), selected as gall development marker genes, followed, during poplar-nematode interaction, a similar expression pattern to what was described for other plant hosts. Downregulation of four genes implicated in the monolignol biosynthesis pathway was evidenced in galls, suggesting a shift in the phenolic profile within galls developed on poplar roots. Raman microspectroscopy demonstrated that cell walls of giant cells were not lignified but mainly composed of pectin and cellulose. The data presented here suggest that RKN exercise conserved strategies to reproduce and to invade perennial plant species and that poplar is a suitable model host to study specific traits of tree-nematode interactions. PMID:27135257

  3. [Canopy conductance characteristics of poplar in agroforestry system in west Liaoning Province of Northeast China].

    PubMed

    Li, Zheng; Niu, Li-Hua; Yuan, Feng-Hui; Guan, De-Xin; Wang, An-Zhi; Jin, Chang-Jie; Wu, Jia-Bing

    2012-11-01

    By using Granier' s thermal dissipation probe, the sap flow of poplar in a poplar-maize agroforestry system in west Liaoning was continuously measured, and as well, the environmental factors such as air temperature, air humidity, net radiation, wind speed, soil temperature, and soil moisture content were synchronically measured. Based on the sap flow data, the canopy conductance of poplar was calculated with simplified Penman-Monteith equation. In the study area, the diurnal variation of poplar' s canopy conductance showed a "single peak" curve, whereas the seasonal variation showed a decreasing trend. There was a negative logarithm relationship between the canopy conductance and vapor pressure deficit, with the sensitivity of canopy conductance to vapor pressure deficit change decreased gradually from May to September. The canopy conductance had a positive relationship with solar radiation. In different months, the correlation degree of canopy conductance with environmental factors differed. The vapor pressure deficit in the whole growth period of poplar was the most significant environmental factor correlated with the canopy conductance. PMID:23431778

  4. Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.

    PubMed

    Foster, Adam J; Pelletier, Gervais; Tanguay, Philippe; Séguin, Armand

    2015-01-01

    Diseases of poplar caused by the native fungal pathogen Sphaerulina musiva and related species are of growing concern, particularly with the increasing interest in intensive poplar plantations to meet growing energy demands. Sphaerulina musiva is able to cause infection on leaves, resulting in defoliation and canker formation on stems. To gain a greater understanding of the different responses of poplar species to infection caused by the naturally co-evolved Sphaerulina species, RNA-seq was conducted on leaves of Populus deltoides, P. balsamifera and P. tremuloides infected with S. musiva, S. populicola and a new undescribed species, Ston1, respectively. The experiment was designed to contain the pathogen in a laboratory environment, while replicating disease development in commercial plantations. Following inoculation, trees were monitored for disease symptoms, pathogen growth and host responses. Genes involved in phenylpropanoid, terpenoid and flavonoid biosynthesis were generally upregulated in P. balsamifera and P. tremuloides, while cell wall modification appears to play an important role in the defense of P. deltoides. Poplar defensive genes were expressed early in P. balsamifera and P. tremuloides, but their expression was delayed in P. deltoides, which correlated with the rate of disease symptoms development. Also, severe infection in P. balsamifera led to leaf abscission. This data gives an insight into the large differences in timing and expression of genes between poplar species being attacked by their associated Sphaerulina pathogen.

  5. [Canopy conductance characteristics of poplar in agroforestry system in west Liaoning Province of Northeast China].

    PubMed

    Li, Zheng; Niu, Li-Hua; Yuan, Feng-Hui; Guan, De-Xin; Wang, An-Zhi; Jin, Chang-Jie; Wu, Jia-Bing

    2012-11-01

    By using Granier' s thermal dissipation probe, the sap flow of poplar in a poplar-maize agroforestry system in west Liaoning was continuously measured, and as well, the environmental factors such as air temperature, air humidity, net radiation, wind speed, soil temperature, and soil moisture content were synchronically measured. Based on the sap flow data, the canopy conductance of poplar was calculated with simplified Penman-Monteith equation. In the study area, the diurnal variation of poplar' s canopy conductance showed a "single peak" curve, whereas the seasonal variation showed a decreasing trend. There was a negative logarithm relationship between the canopy conductance and vapor pressure deficit, with the sensitivity of canopy conductance to vapor pressure deficit change decreased gradually from May to September. The canopy conductance had a positive relationship with solar radiation. In different months, the correlation degree of canopy conductance with environmental factors differed. The vapor pressure deficit in the whole growth period of poplar was the most significant environmental factor correlated with the canopy conductance.

  6. Evapotranspiration and crop coefficient of poplar and willow short-rotation coppice used as vegetation filter.

    PubMed

    Guidi, Werther; Piccioni, Emiliano; Bonari, Enrico

    2008-07-01

    Ten-day evapotranspiration (ETc) and crop coefficient (k(c)) of willow and poplar SRC used as vegetation filter and grown under fertilised (F) and unfertilised (NF) conditions, were determined for two successive growing seasons using volumetric lysimeters. During the first growing season, total ETc observed was, respectively, 620 (NF)-1190 (F)mm in willow and 590 (NF)-725 (F) in poplar. During the second growing season, ETc showed a general increase, mainly in fertilised lysimeters where it ranged between 890 (NF)-1790 mm (F) in willow and 710 (NF)-1100 mm (NF) in poplar. kc reached in both years its maximum between the end of August and the beginning of September. In 2004 maximum kc ranged from 1.25-2.84 in willow and 1.06-1.90 in poplar, whereas in 2005 it ranged from 1.97-5.30 in willow and 1.71-4.28 in poplar. ETc seemed to be strongly correlated to plant development and mainly dependent on its nutritional status rather than on the differences between the species.

  7. Ecological risk assessment of the fish community of the Clinch River/Poplar Creek system

    SciTech Connect

    Suter, G.; Barnthouse, L.; Efroymson, R.; Jaeger, H.; Beauchamp, J.

    1995-12-31

    The CERCLA remedial investigation for the Clinch River/Poplar Creek included the fish community as an endpoint. The assessment endpoint was defined as a 20% reduction in the species richness or abundance of the fish community in the Poplar Creek embayment or in any of three reaches of the Clinch River. Screening of chemicals in water against benchmarks determined that Ag, Cd, Cu, Hg, Ni, Zn, PCBs, and bis(2-ethylhexyl)phthalate were contaminants of potential ecological concern (COPECs). Comparison of the distributions of COPEC concentrations with the distributions of literature toxicity values indicated that none of the COPECs was routinely toxic but episodic concentrations (< 10% of the distribution) of some COPECs were in the toxic range. Aqueous toxicity tests gave unclear results except for regularly high lethality to fish embryos in Poplar Creek. Bioindicators analysis found elevated histopathologies and disrupted reproductive indicators in Centrarchids from Poplar Creek, but their implications for the community are unclear. Body burdens of PCBs in some channel catfish exceeded levels associated with sublethal effects on that species in the laboratory. Electrofishing and gill netting found that the fish community of Poplar Creek had low species number and abundance, but habitat quality was also low. These mixed results present a challenge to ecological risk characterization based on weight-of-evidence. The process of weighing the evidence will be presented.

  8. Poplar-Root Knot Nematode Interaction: A Model for Perennial Woody Species.

    PubMed

    Baldacci-Cresp, Fabien; Sacré, Pierre-Yves; Twyffels, Laure; Mol, Adeline; Vermeersch, Marjorie; Ziemons, Eric; Hubert, Philippe; Pérez-Morga, David; El Jaziri, Mondher; de Almeida Engler, Janice; Baucher, Marie

    2016-07-01

    Plant root-knot nematode (RKN) interaction studies are performed on several host plant models. Though RKN interact with trees, no perennial woody model has been explored so far. Here, we show that poplar (Populus tremula × P. alba) grown in vitro is susceptible to Meloidogyne incognita, allowing this nematode to penetrate, to induce feeding sites, and to successfully complete its life cycle. Quantitative reverse transcription-polymerase chain reaction analysis was performed to study changes in poplar gene expression in galls compared with noninfected roots. Three genes (expansin A, histone 3.1, and asparagine synthase), selected as gall development marker genes, followed, during poplar-nematode interaction, a similar expression pattern to what was described for other plant hosts. Downregulation of four genes implicated in the monolignol biosynthesis pathway was evidenced in galls, suggesting a shift in the phenolic profile within galls developed on poplar roots. Raman microspectroscopy demonstrated that cell walls of giant cells were not lignified but mainly composed of pectin and cellulose. The data presented here suggest that RKN exercise conserved strategies to reproduce and to invade perennial plant species and that poplar is a suitable model host to study specific traits of tree-nematode interactions.

  9. Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.

    PubMed Central

    Foster, Adam J.; Pelletier, Gervais; Tanguay, Philippe; Séguin, Armand

    2015-01-01

    Diseases of poplar caused by the native fungal pathogen Sphaerulina musiva and related species are of growing concern, particularly with the increasing interest in intensive poplar plantations to meet growing energy demands. Sphaerulina musiva is able to cause infection on leaves, resulting in defoliation and canker formation on stems. To gain a greater understanding of the different responses of poplar species to infection caused by the naturally co-evolved Sphaerulina species, RNA-seq was conducted on leaves of Populus deltoides, P. balsamifera and P. tremuloides infected with S. musiva, S. populicola and a new undescribed species, Ston1, respectively. The experiment was designed to contain the pathogen in a laboratory environment, while replicating disease development in commercial plantations. Following inoculation, trees were monitored for disease symptoms, pathogen growth and host responses. Genes involved in phenylpropanoid, terpenoid and flavonoid biosynthesis were generally upregulated in P. balsamifera and P. tremuloides, while cell wall modification appears to play an important role in the defense of P. deltoides. Poplar defensive genes were expressed early in P. balsamifera and P. tremuloides, but their expression was delayed in P. deltoides, which correlated with the rate of disease symptoms development. Also, severe infection in P. balsamifera led to leaf abscission. This data gives an insight into the large differences in timing and expression of genes between poplar species being attacked by their associated Sphaerulina pathogen. PMID:26378446

  10. Enhanced ethanol production from deacetylated yellow poplar acid hydrolysate by Pichia stipitis.

    PubMed

    Cho, Dae Haeng; Shin, Soo-Jeong; Bae, Yangwon; Park, Chulhwan; Kim, Yong Hwan

    2010-07-01

    In this study, alkaline-pretreatment for the extraction of acetic acid from xylan of hemicellulose was introduced prior to concentrated acid hydrolysis of yellow poplar wood meal. Ethanol fermentability in deacetylated yellow poplar hydrolysate (DYPH) by Pichia stipitis was also investigated. The alkali-pretreatment conditions were evaluated in terms of temperature, reaction time, and alkalinity. 94% of the acetyl group in xylan of the yellow poplar hemicellulose fraction was extracted using 0.5% sodium hydroxide solution at 60 degrees C for 60 min. The cell growth and ethanol production of P. stipitis was strongly affected by acetic acid, either in synthetic medium with 7.1g/l of acetic acid added or in yellow poplar hydrolysate (YPH) containing 7.1g/l of acetic acid. On the other hand, ethanol production in DYPH was slightly higher than that of the control although cell growth decreased by 34%. In the case of DYPH, the ethanol yield, volumetric ethanol productivity, and theoretical yield percentage was 0.48 g/g, 0.40 g/lh, and 93.2%, respectively. Thus, the alkaline-pretreatment method greatly enhanced the ethanol fermentability of yellow poplar hydrolysate. PMID:19959357

  11. Field note: hydraulic containment of a BTEX plume using poplar trees.

    PubMed

    Barac, Tanja; Weyens, Nele; Oeyen, Licy; Taghavi, Safiyh; van der Lelie, Daniel; Dubin, Dirk; Spliet, Marco; Vangronsveld, Jaco

    2009-07-01

    In 1999, 275 poplar trees were planted on a field site near a car factory in order to install a bioscreen. The aim was to combine the biodegradation activities of poplar and its associated rhizosphere and endophytic microorganisms for containing a BTEX contaminated groundwater plume. This BTEX plume occurred as the result of leaking solvents and fuel storage tanks. Monitoring, conducted overa 6-year period (1999-2005) after the planting of the trees suggested that the poplar trees and their associated microorganisms had, once the tree roots reached the contaminated groundwater zone, an active role in the remediation of the BTEX plume, resulting in full containment of the contamination. Analysis of the microbial communities associated with poplar demonstrated that, once the poplar roots got in contact with the BTEX contaminated groundwater, enrichment occurred of both rhizosphere and endophytic bacteria that were able to degrade toluene. Interestingly, once the BTEX plume was remediated, the numbers of toluene degrading rhizosphere and endophytic bacteria decreased below the detection limit, indicating that their population resulted from selective enrichment by the presence of the contaminants.

  12. Impacts of transgenic poplar-cotton agro-ecosystems upon target pests and non-target insects under field conditions.

    PubMed

    Zhang, D J; Liu, J X; Lu, Z Y; Li, C L; Comada, E; Yang, M S

    2015-01-01

    Poplar-cotton agro-ecosystems are the main agricultural planting modes of cotton fields in China. With increasing acres devoted to transgenic insect-resistant poplar and transgenic insect-resistant cotton, studies examining the effects of transgenic plants on target and non-target insects become increasingly important. We systematically surveyed populations of both target pests and non-target insects for 4 different combinations of poplar-cotton eco-systems over 3 years. Transgenic Bt cotton strongly resisted the target insects Fall webworm moth [Hyphantria cunea (Drury)], Sylepta derogata Fabrieius, and American bollworm (Heliothis armigera), but no clear impact on non-target insect cotton aphids (Aphis gossypii). Importantly, intercrops containing transgenic Pb29 poplar significantly increased the inhibitory effects of Bt cotton on Fall webworm moth in ecosystem IV. Highly resistant Pb29 poplar reduced populations of the target pests Grnsonoma minutara Hubner and non-target insect poplar leaf aphid (Chaitophorus po-pulialbae), while Fall webworm moth populations were unaffected. We determined the effects of Bt toxin from transgenic poplar and cotton on target and non-target pests in different ecosystems of cotton-poplar intercrops and identified the synergistic effects of such combinations toward both target and non-target insects. PMID:26345739

  13. Impacts of transgenic poplar-cotton agro-ecosystems upon target pests and non-target insects under field conditions.

    PubMed

    Zhang, D J; Liu, J X; Lu, Z Y; Li, C L; Comada, E; Yang, M S

    2015-07-27

    Poplar-cotton agro-ecosystems are the main agricultural planting modes of cotton fields in China. With increasing acres devoted to transgenic insect-resistant poplar and transgenic insect-resistant cotton, studies examining the effects of transgenic plants on target and non-target insects become increasingly important. We systematically surveyed populations of both target pests and non-target insects for 4 different combinations of poplar-cotton eco-systems over 3 years. Transgenic Bt cotton strongly resisted the target insects Fall webworm moth [Hyphantria cunea (Drury)], Sylepta derogata Fabrieius, and American bollworm (Heliothis armigera), but no clear impact on non-target insect cotton aphids (Aphis gossypii). Importantly, intercrops containing transgenic Pb29 poplar significantly increased the inhibitory effects of Bt cotton on Fall webworm moth in ecosystem IV. Highly resistant Pb29 poplar reduced populations of the target pests Grnsonoma minutara Hubner and non-target insect poplar leaf aphid (Chaitophorus po-pulialbae), while Fall webworm moth populations were unaffected. We determined the effects of Bt toxin from transgenic poplar and cotton on target and non-target pests in different ecosystems of cotton-poplar intercrops and identified the synergistic effects of such combinations toward both target and non-target insects.

  14. Final Report: Exudation by Poplar Ectomycorrhizas: Qualitative and Quantitative Assessment of C Sequestration

    SciTech Connect

    Cumming, J R

    2012-11-12

    Study 1. We compared mycorrhizal Populus tremuloides inoculated with Laccaria bicolor and nonmycorrhizal (NM) P. tremuloides seedlings grown under different levels of P nutrition. Decreasing concentrations of P significantly increased the activity of reactive oxygen scavenging enzymes. In addition, phosphoenolpyruvate carboxylase activity increased under P limitation. P deficiency also increased organic acid exudation and total organic carbon exudation. Colonization by L. bicolor reduced the P concentration thresholds where these physiological changes occurred. Study 2. We assessed the influences of ectomycorrhizal colonization on phosphate limitation responses of trembling aspen. Photosynthetic CO2 uptake was reduced in NM poplar, but not in plants colonized by L. bicolor or P. involutus. Reductions in shoot and root biomass in NM plants were substantially greater than reductions in plants colonized by either ectomycorrhizal fungi. Leaf starch and sugar concentrations declined with Pi limitation across mycorrhizal treatments, but were higher in plants colonized by L. bicolor and P. involutus. In roots, starch concentrations were greater in NM plants with Pi limitation. In roots, sugars were significantly higher in NM plants compared to mycorrhizal plants and increased significantly in NM plants under Pi limitation. Concentrations were unaffected by Pi limitation in plants colonized by L. bicolor or P. involutus. Study 3. We analyzed proteins that were differentially expressed during the mycorrhizal association. A comparison of global protein expression elucidated broad differences in protein profiles between NM plants and plants colonized by ectomycorrhizal (ECM) or arbuscular mycorrhizal (AM) fungi as well as differences between the ECM fungi L. bicolor and P. involutus. Plants colonized by P. involutus and G. intraradices exhibited unique patterns of up/down-regulated proteins compared to NM plants, whereas plants colonized by L. bicolor exhibited patterns of

  15. Cadmium interferes with auxin physiology and lignification in poplar

    PubMed Central

    Elobeid, Mudawi; Göbel, Cornelia; Feussner, Ivo; Polle, Andrea

    2012-01-01

    Cadmium (Cd) is a phytotoxic heavy metal that causes rapid growth reduction. To investigate if Cd interferes with the metabolism of auxin, a major growth hormone in plants, poplars (Populus×canescens) expressing a heterologous GH3::GUS reporter gene were exposed to 50 μM Cd in hydroponic solutions. Growth, photosynthetic performance, lignification, peroxidase activity, auxin concentration, and GUS staining were determined in order to record the activities of GH3 enzymes in the stem apex, the elongation zone, wood in the zone of radial growth, and in roots. Cd-induced growth reductions were tissue-specific decreasing in the order: roots>wood>shoot elongation and leaf initiation, whereas Cd concentrations increased in the order: leaves

  16. BIOLOGICAL MONITORING PROGRAM FOR EAST FORK POPLAR CREEK

    SciTech Connect

    ADAMS, S.M.; ASHWOOD, T.L.; BEATY, T.W.; BRANDT, C.C.

    1997-10-24

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y- 12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities.

  17. Enhanced vadose zone nitrogen removal by poplar during dormancy.

    PubMed

    Ausland, Hayden; Ward, Adam; Licht, Louis; Just, Craig

    2015-01-01

    A pilot-scale, engineered poplar tree vadose zone system was utilized to determine effluent nitrate (NO3(-)) and ammonium concentrations resulting from intermittent dosing of a synthetic wastewater onto sandy soils at 4.5°C. The synthetic wastewater replicated that of an industrial food processor that irrigates onto sandy soils even during dormancy which can leave groundwater vulnerable to NO3(-) contamination. Data from a 21-day experiment was used to assess various Hydrus model parameterizations that simulated the impact of dormant roots. Bromide tracer data indicated that roots impacted the hydraulic properties of the packed sand by increasing effective dispersion, water content and residence time. The simulated effluent NO3(-) concentration on day 21 was 1.2 mg-N L(-1) in the rooted treatments compared to a measured value of 1.0 ± 0.72 mg-N L(-1). For the non-rooted treatment, the simulated NO3(-) concentration was 4.7 mg-N L(-1) compared to 5.1 ± 3.5 mg-N L(-1) measured on day 21. The model predicted a substantial "root benefit" toward protecting groundwater through increased denitrification in rooted treatments during a 21-day simulation with 8% of dosed nitrogen converted to N2 compared to 3.3% converted in the non-rooted test cells. Simulations at the 90-day timescale provided similar results, indicating increased denitrification in rooted treatments.

  18. BIOLOGICAL MONITORING PROGRAM FOR EAST FORK POPLAR CREEK

    SciTech Connect

    ADAMS, S.M.; BEATY, T.W.; BRANDT, C.C.; CHRISTENSEN, S.W.; CICERONE, D.S.

    1998-09-09

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities.

  19. Dual targeted poplar ferredoxin NADP(+) oxidoreductase interacts with hemoglobin 1.

    PubMed

    Jokipii-Lukkari, Soile; Kastaniotis, Alexander J; Parkash, Vimal; Sundström, Robin; Leiva-Eriksson, Nélida; Nymalm, Yvonne; Blokhina, Olga; Kukkola, Eija; Fagerstedt, Kurt V; Salminen, Tiina A; Läärä, Esa; Bülow, Leif; Ohlmeier, Steffen; Hiltunen, J Kalervo; Kallio, Pauli T; Häggman, Hely

    2016-06-01

    Previous reports have connected non-symbiotic and truncated hemoglobins (Hbs) to metabolism of nitric oxide (NO), an important signalling molecule involved in wood formation. We have studied the capability of poplar (Populus tremula × tremuloides) Hbs PttHb1 and PttTrHb proteins alone or with a flavin-protein reductase to relieve NO cytotoxicity in living cells. Complementation tests in a Hb-deficient, NO-sensitive yeast (Saccharomyces cerevisiae) Δyhb1 mutant showed that neither PttHb1 nor PttTrHb alone protected cells against NO. To study the ability of Hbs to interact with a reductase, ferredoxin NADP(+) oxidoreductase PtthFNR was characterized by sequencing and proteomics. To date, by far the greatest number of the known dual-targeted plant proteins are directed to chloroplasts and mitochondria. We discovered a novel variant of hFNR that lacks the plastid presequence and resides in cytosol. The coexpression of PttHb1 and PtthFNR partially restored NO resistance of the yeast Δyhb1 mutant, whereas PttTrHb coexpressed with PtthFNR failed to rescue growth. YFP fusion proteins confirmed the interaction between PttHb1 and PtthFNR in plant cells. The structural modelling results indicate that PttHb1 and PtthFNR are able to interact as NO dioxygenase. This is the first report on dual targeting of central plant enzyme FNR to plastids and cytosol. PMID:27095407

  20. Genomics Mechanisms of Carbon Allocation and Partitioning in Poplar

    SciTech Connect

    Kirst, Matias; Peter, Gary; Martin, Timothy

    2009-07-30

    The genetic control of carbon allocation and partitioning in woody perennial plants is poorly understood despite its importance for carbon sequestration. It is also unclear how environmental cues such as nitrogen availability impact the genes that regulate growth, and biomass allocation and wood composition in trees. To address these questions we phenotyped 396 clonally replicated genotypes of an interspecific pseudo-backcross pedigree of Populus for wood composition and biomass traits in above and below ground organs. The loci that regulate growth, carbon allocation and partitioning under two nitrogen conditions were identified, defining the contribution of environmental cues to their genetic control. Fifty-seven quantitative trait loci (QTL) were identified for twenty traits analyzed. The majority of QTL are specific to one of the two nitrogen treatments, demonstrating significant nitrogen-dependent genetic control. A highly significant genetic correlation was observed between plant growth and lignin/cellulose composition, and QTL co-localization identified the genomic position of potential pleiotropic regulators. Gene expression analysis of all poplar genes was also characterized in differentiating xylem, whole-roots and developing leaves of 192 of the segregating population. By integrating the QTL and gene expression information we identified genes that regulate carbon partitioning and several biomass growth related properties. The work developed in this project resulted in the publication of three book chapters, four scientific articles (three others currently in preparation), 17 presentations in international conferences and two provisional patent applications.

  1. Biological monitoring program for East Fork Poplar Creek

    SciTech Connect

    Adams, S.M.; Ashwood, T.L.; Beaty, T.W.; Brandt, C.C.; Christensen, S.W.; Cicerone, D.S.; Greeley, M.S. Jr.; Hill, W.R.; Kszos, L.S.

    1997-04-18

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities.

  2. Effect of autohydrolysis on the wettability, absorbility and further alkali impregnation of poplar wood chips.

    PubMed

    Xu, Ningpan; Liu, Wei; Hou, Qingxi; Wang, Peiyun; Yao, Zhirong

    2016-09-01

    Autohydrolysis with different severity factors was performed on poplar wood chips prior to pulping, and the wettability, absorbility and the following impregnation of NaOH solution for the poplar wood chips were then investigated. The results showed that after autohydrolysis pretreatment the porosity, shrinkage and fiber saturation point (FSP) of the poplar wood chips were increased, while the surface contact angle decreased as the severity factor was increased. The autohydrolyzed chips absorbed more NaOH in impregnation that resulted in a low NaOH concentration in the bulk impregnation liquor (i.e., the impregnation liquor outside wood chips), while the concentration in the entrapped liquor (i.e., the impregnation liquor inside wood chips) was increased. Autohydrolysis substantially improved the effectiveness of alkali impregnation. PMID:27259186

  3. Daytime and nighttime wind differentially affects hydraulic properties and thigmomorphogenic response of poplar saplings.

    PubMed

    Huang, Ping; Wan, Xianchong; Lieffers, Victor J

    2016-05-01

    This study tested how wind in daytime and nighttime affects hydraulic properties and thigmomorphogenic response of poplar saplings. It shows that wind in daytime interrupted water balance of poplar plants by aggravating cavitation in the stem xylem under high xylem tension in the daytime, reducing water potential in midday and hence reducing gas exchange, including stomatal conductance and CO2 assimilation. The wind blowing in daytime significantly reduced plant growth, including height, diameter, leaf size, leaf area, root and whole biomass, whereas wind blowing in nighttime only caused a reduction in radial and height growth at the early stage compared with the control but decreased height:diameter ratios. In summary, the interaction between wind loading and xylem tension exerted a negative impact on water balance, gas exchanges and growth of poplar plants, and wind in nighttime caused only a small thigmomorphogenic response. PMID:26541407

  4. Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar

    PubMed Central

    2010-01-01

    Background Riverine ecosystems, highly sensitive to climate change and human activities, are characterized by rapid environmental change to fluctuating water levels and siltation, causing stress on their biological components. We have little understanding of mechanisms by which riverine plant species have developed adaptive strategies to cope with stress in dynamic environments while maintaining growth and development. Results We report that poplar (Populus spp.) has evolved a systems level "stress proteome" in the leaf-stem-root apoplast continuum to counter biotic and abiotic factors. To obtain apoplast proteins from P. deltoides, we developed pressure-chamber and water-displacement methods for leaves and stems, respectively. Analyses of 303 proteins and corresponding transcripts coupled with controlled experiments and bioinformatics demonstrate that poplar depends on constitutive and inducible factors to deal with water, pathogen, and oxidative stress. However, each apoplast possessed a unique set of proteins, indicating that response to stress is partly compartmentalized. Apoplast proteins that are involved in glycolysis, fermentation, and catabolism of sucrose and starch appear to enable poplar to grow normally under water stress. Pathogenesis-related proteins mediating water and pathogen stress in apoplast were particularly abundant and effective in suppressing growth of the most prevalent poplar pathogen Melampsora. Unexpectedly, we found diverse peroxidases that appear to be involved in stress-induced cell wall modification in apoplast, particularly during the growing season. Poplar developed a robust antioxidative system to buffer oxidation in stem apoplast. Conclusion These findings suggest that multistress response in the apoplast constitutes an important adaptive trait for poplar to inhabit dynamic environments and is also a potential mechanism in other riverine plant species. PMID:21114852

  5. Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar.

    PubMed

    Song, Yuepeng; Tian, Min; Ci, Dong; Zhang, Deqiang

    2015-04-01

    Previous studies showed sex-specific DNA methylation and expression of candidate genes in bisexual flowers of andromonoecious poplar, but the regulatory relationship between methylation and microRNAs (miRNAs) remains unclear. To investigate whether the methylation of miRNA genes regulates gene expression in bisexual flower development, the methylome, microRNA, and transcriptome were examined in female and male flowers of andromonoecious poplar. 27 636 methylated coding genes and 113 methylated miRNA genes were identified. In the coding genes, 64.5% of the methylated reads mapped to the gene body region; by contrast, 60.7% of methylated reads in miRNA genes mainly mapped in the 5' and 3' flanking regions. CHH methylation showed the highest methylation levels and CHG showed the lowest methylation levels. Correlation analysis showed a significant, negative, strand-specific correlation of methylation and miRNA gene expression (r=0.79, P <0.05). The methylated miRNA genes included eight long miRNAs (lmiRNAs) of 24 nucleotides and 11 miRNAs related to flower development. miRNA172b might play an important role in the regulation of bisexual flower development-related gene expression in andromonoecious poplar, via modification of methylation. Gynomonoecious, female, and male poplars were used to validate the methylation patterns of the miRNA172b gene, implying that hyper-methylation in andromonoecious and gynomonoecious poplar might function as an important regulator in bisexual flower development. Our data provide a useful resource for the study of flower development in poplar and improve our understanding of the effect of epigenetic regulation on genes other than protein-coding genes.

  6. Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar.

    PubMed

    Ko, Jae-Heung; Kim, Hyun-Tae; Hwang, Ildoo; Han, Kyung-Hwan

    2012-06-01

    Plant biotechnology offers a means to create novel phenotypes. However, commercial application of biotechnology in crop improvement programmes is severely hindered by the lack of utility promoters (or freedom to operate the existing ones) that can drive gene expression in a tissue-specific or temporally controlled manner. Woody biomass is gaining popularity as a source of fermentable sugars for liquid fuel production. To improve the quantity and quality of woody biomass, developing xylem (DX)-specific modification of the feedstock is highly desirable. To develop utility promoters that can drive transgene expression in a DX-specific manner, we used the Affymetrix Poplar Genome Arrays to obtain tissue-type-specific transcriptomes from poplar stems. Subsequent bioinformatics analysis identified 37 transcripts that are specifically or strongly expressed in DX cells of poplar. After further confirmation of their DX-specific expression using semi-quantitative PCR, we selected four genes (DX5, DX8, DX11 and DX15) for in vivo confirmation of their tissue-specific expression in transgenic poplars. The promoter regions of the selected DX genes were isolated and fused to a β-glucuronidase (GUS)-reported gene in a binary vector. This construct was used to produce transgenic poplars via Agrobacterium-mediated transformation. The GUS expression patterns of the resulting transgenic plants showed that these promoters were active in the xylem cells at early seedling growth and had strongest expression in the developing xylem cells at later growth stages of poplar. We conclude that these DX promoters can be used as a utility promoter for DX-specific biomass engineering.

  7. Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar

    PubMed Central

    Song, Yuepeng; Tian, Min; Ci, Dong; Zhang, Deqiang

    2015-01-01

    Previous studies showed sex-specific DNA methylation and expression of candidate genes in bisexual flowers of andromonoecious poplar, but the regulatory relationship between methylation and microRNAs (miRNAs) remains unclear. To investigate whether the methylation of miRNA genes regulates gene expression in bisexual flower development, the methylome, microRNA, and transcriptome were examined in female and male flowers of andromonoecious poplar. 27 636 methylated coding genes and 113 methylated miRNA genes were identified. In the coding genes, 64.5% of the methylated reads mapped to the gene body region; by contrast, 60.7% of methylated reads in miRNA genes mainly mapped in the 5′ and 3′ flanking regions. CHH methylation showed the highest methylation levels and CHG showed the lowest methylation levels. Correlation analysis showed a significant, negative, strand-specific correlation of methylation and miRNA gene expression (r=0.79, P <0.05). The methylated miRNA genes included eight long miRNAs (lmiRNAs) of 24 nucleotides and 11 miRNAs related to flower development. miRNA172b might play an important role in the regulation of bisexual flower development-related gene expression in andromonoecious poplar, via modification of methylation. Gynomonoecious, female, and male poplars were used to validate the methylation patterns of the miRNA172b gene, implying that hyper-methylation in andromonoecious and gynomonoecious poplar might function as an important regulator in bisexual flower development. Our data provide a useful resource for the study of flower development in poplar and improve our understanding of the effect of epigenetic regulation on genes other than protein-coding genes. PMID:25617468

  8. Physical and chemical characterizations of corn stover and poplar solids resulting from leading pretreatment technologies.

    PubMed

    Kumar, Rajeev; Mago, Gaurav; Balan, Venkatesh; Wyman, Charles E

    2009-09-01

    In order to investigate changes in substrate chemical and physical features after pretreatment, several characterizations were performed on untreated (UT) corn stover and poplar and their solids resulting pretreatments by ammonia fiber expansion (AFEX), ammonia recycled percolation (ARP), controlled pH, dilute acid, flowthrough, lime, and SO(2) technologies. In addition to measuring the chemical compositions including acetyl content, physical attributes determined were biomass crystallinity, cellulose degree of polymerization, cellulase adsorption capacity of pretreated solids and enzymatically extracted lignin, copper number, FT-IR responses, scanning electron microscopy (SEM) visualizations, and surface atomic composition by electron spectroscopy of chemical analysis (ESCA). Lime pretreatment removed the most acetyl groups from both corn stover and poplar, while AFEX removed the least. Low pH pretreatments depolymerized cellulose and enhanced biomass crystallinity much more than higher pH approaches. Lime pretreated corn stover solids and flowthrough pretreated poplar solids had the highest cellulase adsorption capacity, while dilute acid pretreated corn stover solids and controlled pH pretreated poplar solids had the least. Furthermore, enzymatically extracted AFEX lignin preparations for both corn stover and poplar had the lowest cellulase adsorption capacity. ESCA results showed that SO(2) pretreated solids had the highest surface O/C ratio for poplar, but for corn stover, the highest value was observed for dilute acid pretreatment with a Parr reactor. Although dependent on pretreatment and substrate, FT-IR data showed that along with changes in cross linking and chemical changes, pretreatments may also decrystallize cellulose and change the ratio of crystalline cellulose polymorphs (Ialpha/Ibeta).

  9. Energy partitioning and surface resistance of a poplar plantation in northern China

    NASA Astrophysics Data System (ADS)

    Kang, M.; Zhang, Z.; Noormets, A.; Fang, X.; Zha, T.; Zhou, J.; Sun, G.; McNulty, S. G.; Chen, J.

    2015-07-01

    Poplar (Populus sp.) plantations have been, on the one hand, broadly used in northern China for urban greening, combating desertification, as well as for paper and wood production. On the other hand, such plantations have been questioned occasionally for their possible negative impacts on water availability due to the higher water-use nature of poplar trees compared with other tree species in water-limited dryland regions. To further understand the acclimation of poplar species to semiarid environments and to evaluate the potential impacts of these plantations on the broader context of the region's water supply, we examine the variability of bulk resistance parameters and energy partitioning in a poplar (Populus euramericana cv. "74/76") plantation located in northern China over a 4-year period, encompassing both dry and wet conditions. The partitioning of available energy to latent heat flux (LE) decreased from 0.62 to 0.53 under mediated meteorological drought by irrigation applications. A concomitant increase in sensible heat flux (H) resulted in the increase of a Bowen ratio from 0.83 to 1.57. Partial correlation analysis indicated that surface resistance (Rs) normalized by leaf area index (LAI; Rs:LAI) increased by 50 % under drought conditions and was the dominant factor controlling the Bowen ratio. Furthermore, Rs was the main factor controlling LE during the growing season, even in wet years, as indicated by the decoupling coefficient (Ω = 0.45 and 0.39 in wet and dry years, respectively). Rs was also a major regulator of the LE / LEeq ratio, which decreased from 0.81 in wet years to 0.68 in dry years. All physiological and bioclimatological metrics indicated that the water demands of the poplar plantation were greater than the amount available through precipitation, highlighting the poor match of a water-intensive species like poplar for this water-limited region.

  10. Poplar Carbohydrate-Active Enzymes. Gene Identification and Expression Analyses1[W

    PubMed Central

    Geisler-Lee, Jane; Geisler, Matt; Coutinho, Pedro M.; Segerman, Bo; Nishikubo, Nobuyuki; Takahashi, Junko; Aspeborg, Henrik; Djerbi, Soraya; Master, Emma; Andersson-Gunnerås, Sara; Sundberg, Björn; Karpinski, Stanislaw; Teeri, Tuula T.; Kleczkowski, Leszek A.; Henrissat, Bernard; Mellerowicz, Ewa J.

    2006-01-01

    Over 1,600 genes encoding carbohydrate-active enzymes (CAZymes) in the Populus trichocarpa (Torr. & Gray) genome were identified based on sequence homology, annotated, and grouped into families of glycosyltransferases, glycoside hydrolases, carbohydrate esterases, polysaccharide lyases, and expansins. Poplar (Populus spp.) had approximately 1.6 times more CAZyme genes than Arabidopsis (Arabidopsis thaliana). Whereas most families were proportionally increased, xylan and pectin-related families were underrepresented and the GT1 family of secondary metabolite-glycosylating enzymes was overrepresented in poplar. CAZyme gene expression in poplar was analyzed using a collection of 100,000 expressed sequence tags from 17 different tissues and compared to microarray data for poplar and Arabidopsis. Expression of genes involved in pectin and hemicellulose metabolism was detected in all tissues, indicating a constant maintenance of transcripts encoding enzymes remodeling the cell wall matrix. The most abundant transcripts encoded sucrose synthases that were specifically expressed in wood-forming tissues along with cellulose synthase and homologs of KORRIGAN and ELP1. Woody tissues were the richest source of various other CAZyme transcripts, demonstrating the importance of this group of enzymes for xylogenesis. In contrast, there was little expression of genes related to starch metabolism during wood formation, consistent with the preferential flux of carbon to cell wall biosynthesis. Seasonally dormant meristems of poplar showed a high prevalence of transcripts related to starch metabolism and surprisingly retained transcripts of some cell wall synthesis enzymes. The data showed profound changes in CAZyme transcriptomes in different poplar tissues and pointed to some key differences in CAZyme genes and their regulation between herbaceous and woody plants. PMID:16415215

  11. Uptake of ferrocyanide in willow and poplar trees in a long term greenhouse experiment.

    PubMed

    Dimitrova, Tsvetelina; Repmann, Frank; Raab, Thomas; Freese, Dirk

    2015-04-01

    Phytoremediation of sites contaminated with iron cyanides can be performed using poplar and willow trees. Poplar and willow trees were grown in potting substrate spiked with ferrocyanide concentrations of up to 2,000 mg kg(-1) for 4 and 8 weeks respectively. Soil solution and leaf tissue of different age were sampled for total cyanide analysis every week. Chlorophyll content in the leaves was determined to quantify cyanide toxicity. Results showed that cyanide in the soil solution of spiked soils differed between treatments and on weekly basis and ranged from 0.5 to 1,200 mg l(-1). The maximum cyanide content in willow and poplar leaves was 518 mg kg(-1) fresh weight (FW) and 148 mg kg(-1) FW respectively. Cyanide accumulated in the leaves increased linearly with increasing cyanide concentration in the soil solution. On the long term, significantly more cyanide was accumulated in old leaf tissue than in young tissue. Chlorophyll content in poplar decreased linearly with increasing cyanide in the soil solution and in leaf tissue, and over time. The inhibitory concentration (IC50) value for poplars after 4 weeks of exposure was 173 mg l(-1) and for willow after 8 weeks of exposure-768 mg l(-1). Results show that willows tolerate much more cyanide and over a longer period than poplars, making them very appropriate for remediating sites highly contaminated with iron cyanides.

  12. Apoplast proteome reveals that extracellular matrix contributes to multi-stress response in poplar

    SciTech Connect

    Pechanova, Olga; Hsu, Chuan-Yu; Adams, Joshua P.; Pechan, Tibor; Vandervelde, Lindsay; Drnevich, Jenny; Jawdy, Sara; Adeli, Ardeshir; Suttle, Jeffrey; Lawrence, Amanda; Tschaplinski, Timothy J; Seguin, Armand; Yuceer, Cetin

    2010-01-01

    Riverine ecosystems, highly sensitive to climate change and human activities, are characterized by rapid environmental change to fluctuating water levels and siltation, causing stress on their biological components. We have little understanding of mechanisms by which riverine plant species have developed adaptive strategies to cope with stress in dynamic environments while maintaining growth and development. We report that poplar (Populus spp.) has evolved a systems level 'stress proteome' in the leaf-stem-root apoplast continuum to counter biotic and abiotic factors. To obtain apoplast proteins from P. deltoides, we developed pressure-chamber and water-displacement methods for leaves and stems, respectively. Analyses of 303 proteins and corresponding transcripts coupled with controlled experiments and bioinformatics demonstrate that poplar depends on constitutive and inducible factors to deal with water, pathogen, and oxidative stress. However, each apoplast possessed a unique set of proteins, indicating that response to stress is partly compartmentalized. Apoplast proteins that are involved in glycolysis, fermentation, and catabolism of sucrose and starch appear to enable poplar to grow normally under water stress. Pathogenesis-related proteins mediating water and pathogen stress in apoplast were particularly abundant and effective in suppressing growth of the most prevalent poplar pathogen Melampsora. Unexpectedly, we found diverse peroxidases that appear to be involved in stress-induced cell wall modification in apoplast, particularly during the growing season. Poplar developed a robust antioxidative system to buffer oxidation in stem apoplast. These findings suggest that multistress response in the apoplast constitutes an important adaptive trait for poplar to inhabit dynamic environments and is also a potential mechanism in other riverine plant species.

  13. Results of a workshop concerning impacts of various activities on the functions of bottomland hardwoods

    USGS Publications Warehouse

    Roelle, James E.; Auble, Gregor T.; Hamilton, David B.; Horak, Gerald C.; Johnson, Richard L.; Segelquist, Charles A.

    1987-01-01

    Under Section 404 of the Clean Water Act, the U.S. Environmental Protection Agency (EPA) has regulatory responsibilities related to the discharge of dredged or fill material into the Nation’s waters. In addition to its advisory role in the U.S. Army Corps of Engineers' permit program, EPA has a number of specific authorities, including formulation of the Section 404(b)(1) guidelines, use of Section 404(c) to prohibit disposal at particular sites, and enforcement actions for unauthorized discharges. A number of recent court cases focus on the geographic scope of Section 404 jurisdiction in potential bottomland hardwood (BLH) wetlands and the nature of landclearing activities in these areas that require a permit under Section 404. Accordingly, EPA needs to establish the scientific basis for implementing its responsibilities under Section 404 in bottomland hardwoods. EPA is approaching this task through a series of workshops designed to provide current scientific information on bottomland hardwoods and to organize that information in a manner pertinent to key policy questions. The first two workshops in the series were originally conceived as technically oriented meetings that would provide the information necessary to develop policy options at the third workshop. More specifically, the first workshop was designed to examine a zonation concept as a means of characterizing different BLH communities and describing variations in their functions along a soil moisture gradient. The second workshop was perceived as an attempt to evaluate the impacts of various activities on those functions. However, one conclusion of the first workshop, which was held in December 1984 in St. Francisville, Louisiana, was that the zonation approach does not describe the variability in the functions performed by BLH ecosystems sufficiently well to allow its use as the sole basis for developing a regulatory framework. That is, factors other than zone were considered critical for an effective

  14. Strong RNAi-inhibition of 4CL expression alters lignification, saccharification potential and productivity of field-grown poplar

    SciTech Connect

    Tuskan, Gerald A; Gunter, Lee E; Strauss, S

    2007-01-01

    RNAi-associated down-regulation of the Pt4CL1 gene family encoding 4-coumarate:coenzyme A ligase (4CL) has been proposed as a means for reducing lignin content in cell walls, and thereby improving feedstock quality for paper and bioethanol production. Using hybrid poplars (Populus) we employed RNAi gene suppression of 4CL to generate 14 transgenic events and compared them to a non-transgenic control. After a two-year field trial we characterized the consequences of 4CL down-regulation on wood biochemistry and tree productivity. Lignin reductions correlated well with 4CL RNA expression, with a sharp decrease in lignin observed for RNA expression levels below ~50%. Lignin reductions greater than ~10% of the control value were associated with reduced productivity, decreased wood S/G (syringyl/guaiacyl) lignin monomer ratios, and increased incorporation of H-monomers (p-hydroxyphenyl) into cell walls. Strongly affected transgenic events were also characterized by patches of brown, discolored wood with about twice the extractive (complex polyphenolic) content of controls. There was no support for the hypothesis that reduced lignin would increase saccharification potential. The data presented suggest that a threshold of lignin reduction exists, beyond which there are large changes in wood chemistry and plant metabolism that affect productivity and potential ethanol yield.

  15. Some important physical properties of laminated veneer lumber (Lvl) made from oriental beech and Lombardy poplar

    NASA Astrophysics Data System (ADS)

    Kılıç, Murat

    2012-09-01

    This study examined some physical characteristics of laminated veneer lumber (LVL) obtained in different compositions from cut veneers of Oriental beech (Fagus Orientalis Lipsky) and Lombardy poplar (Populus nigra) with thicknesses of 4 mm and 5 mm. Five each beech and poplar trees were felled with this objective. The PVAc (Kleiberit 303) and PU (Bizon Timber PU-Max Express) types of adhesive were used in lamination. The air-dry and oven dry densities, cell wall density and porosity, the value of volume density, shrinkage in a tangential and radial direction and volume swelling amounts were determined by preparing the specimens in accordance with the standards.

  16. Poplar-type Propolis: Chemical Composition, Botanical Origin and Biological Activity.

    PubMed

    Ristivojević, Petar; Trifković, Jelena; Andrić, Filip; Milojković-Opsenica, Dusanka

    2015-11-01

    Propolis is one of the most used natural products known for centuries for its beneficial effects. Due to significant differences in chemical composition of samples originating from different geographic and climatic zones it is crucial to characterize reliably each type of propolis. This article comprises the latest findings concerning the poplar type propolis, i.e. it gives a cross section of chemical composition, botanical origin and biological activity of poplar type propolis in order to encourage further investigations that would indicate its beneficial effects.

  17. Evaluating the tolerance of young hybrid poplar trees to recycled waters high in salinity and boron.

    PubMed

    Bañuelos, G S; LeDuc, D; Johnson, J

    2010-07-01

    The successful adoption of water recycling strategies in many arid regions will require crops able to tolerate poor-quality waters. We evaluated different clones for salt and boron (B) tolerance within each of seven genetically distinct genomic groups (e.g., deltoides, deltoides x nigra, trichocarpa x deltoides, trichocarpa x deltoides x maximowizcii, trichocarpa x deltoides x nigra, trichocarpa x nigra, trichocarpa x maximowizcii). During each evaluation period, different clones within each of the groups were irrigated with high sodium chloride (NaCl) salinity (i.e., 10-30 dS m(-1)) and B (i.e., 10 mg L(-1)) water up to a maximum of 150 days, for a 4-year testing period under micro-field plot conditions. Excessive accumulation (up to 6%) of chloride (Cl) likely caused toxicity symptoms (necrosis of the leaves) observed in the less tolerant clones, while leaf B concentrations rarely exceeded 300 mg kg(-1) DM in any clone. Increased soil salinity likely hindered the uptake of B by the clones. Our results show that a wide range of selected Populus clones, of parentage trichocarpa x nigra, followed by deltoides x nigra show potential salt and B tolerance as young trees to recycled waters high in salinity and B. PMID:21166286

  18. Growth and carbohydrate status of coppice shoots of hybrid poplar following shoot pruning.

    PubMed

    Tschaplinski, T J; Blake, T J

    1995-05-01

    Fifteen, 1-year-old Populus maximowiczii Henry x P. nigra L. 'MN9' trees were decapitated and allowed to sprout. After 8 weeks, all had 6 to 10 coppice shoots. All shoots, except the tallest (dominant) shoot, were removed from five of the trees (pruned treatment), and shoot growth, gas exchange and carbohydrate status were compared in the pruned and unpruned trees. Although photosynthetic rate of recently mature leaves of pruned trees was approximately 50% greater than that of leaves on the dominant shoot of unpruned trees, and the dry weight of leaves of pruned trees was 37% greater than that of the leaves on the dominant shoot of unpruned trees, the shoot dry matter relative growth rate did not differ between treatments. Concentrations of water-soluble carbohydrates and starch in the uppper stem and leaves of the dominant shoot were similar in pruned and unpruned trees. However, relative to that of the dominant shoot in unpruned trees, the lower stem in pruned trees was depleted in both soluble carbohydrates and starch. Starch deposition, assessed as the quantity of (14)C-starch in tissues 24 h after a fully expanded source leaf was labeled with (14)CO(2), was 3.9 times greater in roots of pruned trees than in roots of unpruned trees. We conclude that early removal of all but the dominant shoot reduces the carbohydrate status of the roots and the lower portion of the stem by eliminating the excised shoots as a source of photosynthate.

  19. DISTRIBUTION AND VOLATILIZATION OF ORGANIC COMPOUNDS FOLLOWING UPTAKE BY HYBRID POPLAR TREES. (R825549C060)

    EPA Science Inventory

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  20. Restoration of Upland Hardwood Tree Species on the Formerly Cultivated Soils in the Coastal Plain of South Carolina

    SciTech Connect

    Jones, R.H.; Waldrop, T.A.

    2001-08-03

    The authors studied various approaches to restore upland hardwood species to formerly cultivated soils at the SRS. Studies with direct seedling were largely a failure and resulted in very low rates of establishment. Failure was a result of predation and drought. Growth and survival of planted oaks, dogwood and pine did not vary between hardwood overstory and pine overstory conditions. Soil trenching in a forty year old loblolly stand demonstrated dramatic increases in growth of planted oaks and dogwood. When compared, survival is similar if not slightly better when seedlings are planted in the understory of canopies vs. clearcuts. However, growth is better in recent clearcuts for dogwood and white oaks. Hickory does better underplanted.

  1. Operational restoration of the Pen Branch bottomland hardwood and swamp wetlands - the research setting

    SciTech Connect

    Nelson, E.A.

    2000-01-05

    The Savannah River Swamp is a 3020 Ha forested wetland on the floodplain of the Savannah River and is located on the Department of Energy's Savannah River Site (SRS) near Aiken, SC. Historically the swamp consisted of approximately 50 percent bald cypress-water tupelo stands, 40 percent mixed bottomland hardwood stands, and 10 percent shrub, marsh, and open water. Creek corridors were typical of Southeastern bottomland hardwood forests. The hydrology was controlled by flooding of the Savannah River and by flow from four creeks that drain into the swamp prior to flow into the Savannah River. Upstream dams have caused some alteration of the water levels and timing of flooding within the floodplain. Major impacts to the swamp hydrology occurred with the completion of the production reactors and one coal-fired powerhouse at the SRS in the early 1950's. Water was pumped from the Savannah River, through secondary heat exchangers of the reactors, and discharged into three of the tributary streams that flow into the swamp. Flow in one of the tributaries, Pen Branch, was typically 0.3 m3 s-1 (10-20) cfs prior to reactor pumping and 11.0 m3 s-1 (400 cfs) during pumping. This continued from 1954 to 1988 at various levels. The sustained increases in water volume resulted in overflow of the original stream banks and the creation of additional floodplains. Accompanying this was considerable erosion of the original stream corridor and deposition of a deep silt layer on the newly formed delta. Heated water was discharged directly into Pen Branch and water temperature in the stream often exceeded 65 degrees C. The nearly continuous flooding of the swamp, the thermal load of the water, and the heavy silting resulted in complete mortality of the original vegetation in large areas of the floodplain. In the years since pumping was reduced, early succession has begun in some affected areas. Most of this has been herbs, grasses, and shrubs. Areas that have seedlings are generally willow

  2. Segregating the Effects of Seed Traits and Common Ancestry of Hardwood Trees on Eastern Gray Squirrel Foraging Decisions

    PubMed Central

    Sundaram, Mekala; Willoughby, Janna R.; Lichti, Nathanael I.; Steele, Michael A.; Swihart, Robert K.

    2015-01-01

    The evolution of specific seed traits in scatter-hoarded tree species often has been attributed to granivore foraging behavior. However, the degree to which foraging investments and seed traits correlate with phylogenetic relationships among trees remains unexplored. We presented seeds of 23 different hardwood tree species (families Betulaceae, Fagaceae, Juglandaceae) to eastern gray squirrels (Sciurus carolinensis), and measured the time and distance travelled by squirrels that consumed or cached each seed. We estimated 11 physical and chemical seed traits for each species, and the phylogenetic relationships between the 23 hardwood trees. Variance partitioning revealed that considerable variation in foraging investment was attributable to seed traits alone (27–73%), and combined effects of seed traits and phylogeny of hardwood trees (5–55%). A phylogenetic PCA (pPCA) on seed traits and tree phylogeny resulted in 2 “global” axes of traits that were phylogenetically autocorrelated at the family and genus level and a third “local” axis in which traits were not phylogenetically autocorrelated. Collectively, these axes explained 30–76% of the variation in squirrel foraging investments. The first global pPCA axis, which produced large scores for seed species with thin shells, low lipid and high carbohydrate content, was negatively related to time to consume and cache seeds and travel distance to cache. The second global pPCA axis, which produced large scores for seeds with high protein, low tannin and low dormancy levels, was an important predictor of consumption time only. The local pPCA axis primarily reflected kernel mass. Although it explained only 12% of the variation in trait space and was not autocorrelated among phylogenetic clades, the local axis was related to all four squirrel foraging investments. Squirrel foraging behaviors are influenced by a combination of phylogenetically conserved and more evolutionarily labile seed traits that is

  3. Segregating the Effects of Seed Traits and Common Ancestry of Hardwood Trees on Eastern Gray Squirrel Foraging Decisions.

    PubMed

    Sundaram, Mekala; Willoughby, Janna R; Lichti, Nathanael I; Steele, Michael A; Swihart, Robert K

    2015-01-01

    The evolution of specific seed traits in scatter-hoarded tree species often has been attributed to granivore foraging behavior. However, the degree to which foraging investments and seed traits correlate with phylogenetic relationships among trees remains unexplored. We presented seeds of 23 different hardwood tree species (families Betulaceae, Fagaceae, Juglandaceae) to eastern gray squirrels (Sciurus carolinensis), and measured the time and distance travelled by squirrels that consumed or cached each seed. We estimated 11 physical and chemical seed traits for each species, and the phylogenetic relationships between the 23 hardwood trees. Variance partitioning revealed that considerable variation in foraging investment was attributable to seed traits alone (27-73%), and combined effects of seed traits and phylogeny of hardwood trees (5-55%). A phylogenetic PCA (pPCA) on seed traits and tree phylogeny resulted in 2 "global" axes of traits that were phylogenetically autocorrelated at the family and genus level and a third "local" axis in which traits were not phylogenetically autocorrelated. Collectively, these axes explained 30-76% of the variation in squirrel foraging investments. The first global pPCA axis, which produced large scores for seed species with thin shells, low lipid and high carbohydrate content, was negatively related to time to consume and cache seeds and travel distance to cache. The second global pPCA axis, which produced large scores for seeds with high protein, low tannin and low dormancy levels, was an important predictor of consumption time only. The local pPCA axis primarily reflected kernel mass. Although it explained only 12% of the variation in trait space and was not autocorrelated among phylogenetic clades, the local axis was related to all four squirrel foraging investments. Squirrel foraging behaviors are influenced by a combination of phylogenetically conserved and more evolutionarily labile seed traits that is consistent with a weak

  4. Segregating the Effects of Seed Traits and Common Ancestry of Hardwood Trees on Eastern Gray Squirrel Foraging Decisions.

    PubMed

    Sundaram, Mekala; Willoughby, Janna R; Lichti, Nathanael I; Steele, Michael A; Swihart, Robert K

    2015-01-01

    The evolution of specific seed traits in scatter-hoarded tree species often has been attributed to granivore foraging behavior. However, the degree to which foraging investments and seed traits correlate with phylogenetic relationships among trees remains unexplored. We presented seeds of 23 different hardwood tree species (families Betulaceae, Fagaceae, Juglandaceae) to eastern gray squirrels (Sciurus carolinensis), and measured the time and distance travelled by squirrels that consumed or cached each seed. We estimated 11 physical and chemical seed traits for each species, and the phylogenetic relationships between the 23 hardwood trees. Variance partitioning revealed that considerable variation in foraging investment was attributable to seed traits alone (27-73%), and combined effects of seed traits and phylogeny of hardwood trees (5-55%). A phylogenetic PCA (pPCA) on seed traits and tree phylogeny resulted in 2 "global" axes of traits that were phylogenetically autocorrelated at the family and genus level and a third "local" axis in which traits were not phylogenetically autocorrelated. Collectively, these axes explained 30-76% of the variation in squirrel foraging investments. The first global pPCA axis, which produced large scores for seed species with thin shells, low lipid and high carbohydrate content, was negatively related to time to consume and cache seeds and travel distance to cache. The second global pPCA axis, which produced large scores for seeds with high protein, low tannin and low dormancy levels, was an important predictor of consumption time only. The local pPCA axis primarily reflected kernel mass. Although it explained only 12% of the variation in trait space and was not autocorrelated among phylogenetic clades, the local axis was related to all four squirrel foraging investments. Squirrel foraging behaviors are influenced by a combination of phylogenetically conserved and more evolutionarily labile seed traits that is consistent with a weak

  5. Expression of Multiple Resistance Genes Enhances Tolerance to Environmental Stressors in Transgenic Poplar (Populus × euramericana ‘Guariento’)

    PubMed Central

    Su, Xiaohua; Chu, Yanguang; Li, Huan; Hou, Yingjie; Zhang, Bingyu; Huang, Qinjun; Hu, Zanmin; Huang, Rongfeng; Tian, Yingchuan

    2011-01-01

    Commercial and non-commercial plants face a variety of environmental stressors that often cannot be controlled. In this study, transgenic hybrid poplar (Populus × euramericana ‘Guariento’) harboring five effector genes (vgb, SacB, JERF36, BtCry3A and OC-I) were subjected to drought, salinity, waterlogging and insect stressors in greenhouse or laboratory conditions. Field trials were also conducted to investigate long-term effects of transgenic trees on insects and salt tolerance in the transformants. In greenhouse studies, two transgenic lines D5-20 and D5-21 showed improved growth, as evidenced by greater height and basal diameter increments and total biomass relative to the control plants after drought or salt stress treatments. The improved tolerance to drought and salt was primarily attributed to greater instantaneous water use efficiency (WUEi) in the transgenic trees. The chlorophyll concentrations tended to be higher in the transgenic lines under drought or saline conditions. Transformed trees in drought conditions accumulated more fructan and proline and had increased Fv/Fm ratios (maximum quantum yield of photosystem II) under waterlogging stress. Insect-feeding assays in the laboratory revealed a higher total mortality rate and lower exuviation index of leaf beetle [Plagiodera versicolora (Laicharting)] larvae fed with D5-21 leaves, suggesting enhanced insect resistance in the transgenic poplar. In field trials, the dominance of targeted insects on 2-year-old D5-21 transgenic trees was substantially lower than that of the controls, indicating enhanced resistance to Coleoptera. The average height and DBH (diameter at breast height) of 2.5-year-old transgenic trees growing in naturally saline soil were 3.80% and 4.12% greater than those of the control trees, but these increases were not significant. These results suggested that multiple stress-resistance properties in important crop tree species could be simultaneously improved, although additional

  6. Expression of multiple resistance genes enhances tolerance to environmental stressors in transgenic poplar (Populus × euramericana 'Guariento').

    PubMed

    Su, Xiaohua; Chu, Yanguang; Li, Huan; Hou, Yingjie; Zhang, Bingyu; Huang, Qinjun; Hu, Zanmin; Huang, Rongfeng; Tian, Yingchuan

    2011-01-01

    Commercial and non-commercial plants face a variety of environmental stressors that often cannot be controlled. In this study, transgenic hybrid poplar (Populus × euramericana 'Guariento') harboring five effector genes (vgb, SacB, JERF36, BtCry3A and OC-I) were subjected to drought, salinity, waterlogging and insect stressors in greenhouse or laboratory conditions. Field trials were also conducted to investigate long-term effects of transgenic trees on insects and salt tolerance in the transformants. In greenhouse studies, two transgenic lines D5-20 and D5-21 showed improved growth, as evidenced by greater height and basal diameter increments and total biomass relative to the control plants after drought or salt stress treatments. The improved tolerance to drought and salt was primarily attributed to greater instantaneous water use efficiency (WUEi) in the transgenic trees. The chlorophyll concentrations tended to be higher in the transgenic lines under drought or saline conditions. Transformed trees in drought conditions accumulated more fructan and proline and had increased Fv/Fm ratios (maximum quantum yield of photosystem II) under waterlogging stress. Insect-feeding assays in the laboratory revealed a higher total mortality rate and lower exuviation index of leaf beetle [Plagiodera versicolora (Laicharting)] larvae fed with D5-21 leaves, suggesting enhanced insect resistance in the transgenic poplar. In field trials, the dominance of targeted insects on 2-year-old D5-21 transgenic trees was substantially lower than that of the controls, indicating enhanced resistance to Coleoptera. The average height and DBH (diameter at breast height) of 2.5-year-old transgenic trees growing in naturally saline soil were 3.80% and 4.12% greater than those of the control trees, but these increases were not significant. These results suggested that multiple stress-resistance properties in important crop tree species could be simultaneously improved, although additional

  7. Windows of opportunity: white-tailed deer and the dynamics of northern hardwood forests of the northeastern US

    USGS Publications Warehouse

    Sage, R.W.; Porter, W.F.; Underwood, H.B.

    2003-01-01

    Herbivory, lighting regimes, and site conditions are among the most important determinants of forest regeneration success, but these are affected by a host of other factors such as weather, predation, human exploitation, pathogens, wind and fire. We draw together > 50 years of research on the Huntington Wildlife Forest in the central Adirondack Mountains of New York to explore regeneration of northern hardwoods. A series of studies each of which focused on a single factor failed to identify the cause of regeneration failure. However, integration of these studies led to broader understanding of the process of forest stand development and identified at least three interacting factors: lighting regime, competing vegetation and selective browsing by white-tailed deer (Odocoileus virginianus). The diverse 100-200 year-old hardwood stands present today probably reflect regeneration during periods of low deer density (< 2.0 deer/km super(2)) and significant forest disturbance. If this hypothesis is correct, forest managers can mimic these 'natural windows of opportunity' through manipulation of a few sensitive variables in the system. Further, these manipulations can be conducted on a relatively small geographic scale. Control of deer densities on a scale of 500 ha and understory American beech (Fagus grandifolia) on a scale of < 100 ha in conjunction with an even-aged regeneration system consistently resulted in successful establishment of desirable hardwood regeneration.

  8. Effect of Genetically Modified Poplars on Soil Microbial Communities during the Phytoremediation of Waste Mine Tailings▿†

    PubMed Central

    Hur, Moonsuk; Kim, Yongho; Song, Hae-Ryong; Kim, Jong Min; Choi, Young Im; Yi, Hana

    2011-01-01

    The application of transgenic plants to clean up environmental pollution caused by the wastes of heavy metal mining is a promising method for removing metal pollutants from soils. However, the effect of using genetically modified organisms for phytoremediation is a poorly researched topic in terms of microbial community structures, despite the important role of microorganisms in the health of soil. In this study, a comparative analysis of the bacterial and archaeal communities found in the rhizosphere of genetically modified (GM) versus wild-type (WT) poplar was conducted on trees at different growth stages (i.e., the rhizospheres of 1.5-, 2.5-, and 3-year-old poplars) that were cultivated on contaminated soils together with nonplanted control soil. Based on the results of DNA pyrosequencing, poplar type and growth stages were associated with directional changes in the structure of the microbial community. The rate of change was faster in GM poplars than in WT poplars, but the microbial communities were identical in the 3-year-old poplars. This phenomenon may arise because of a higher rate and greater extent of metal accumulation in GM poplars than in naturally occurring plants, which resulted in greater changes in soil environments and hence the microbial habitat. PMID:21890678

  9. The poplar basic helix-loop-helix transcription factor BEE3 - Like gene affects biomass production by enhancing proliferation of xylem cells in poplar.

    PubMed

    Noh, Seol Ah; Choi, Young-Im; Cho, Jin-Seong; Lee, Hyoshin

    2015-06-19

    Brassinosteroids (BRs) play important roles in many aspects of plant growth and development, including regulation of vascular cambium activities and cell elongation. BR-induced BEE3 (brassinosteroid enhanced expression 3) is required for a proper BR response. Here, we identified a poplar (Populus alba × Populus glandulosa) BEE3-like gene, PagBEE3L, encoding a putative basic helix-loop-helix (bHLH)-type transcription factor. Expression of PagBEE3L was induced by brassinolide (BL). Transcripts of PagBEE3L were mainly detected in stems, with the internode having a low level of transcription and the node having a relatively higher level. The function of the PagBEE3L gene was investigated through phenotypic analyses with PagBEE3L-overexpressing (ox) transgenic lines. This work particularly focused on a potential role of PagBEE3L in stem growth and development of polar. The PagBEE3L-ox poplar showed thicker and longer stems than wild-type plants. The xylem cells from the stems of PagBEE3L-ox plants revealed remarkably enhanced proliferation, resulting in an earlier thickening growth than wild-type plants. Therefore, this work suggests that xylem development of poplar is accelerated in PagBEE3L-ox plants and PagBEE3L plays a role in stem growth by increasing the proliferation of xylem cells to promote the initial thickening growth of poplar stems.

  10. Improvement of butanol production from a hardwood hemicelluloses hydrolysate by combined sugar concentration and phenols removal.

    PubMed

    Mechmech, Fatma; Chadjaa, Hassan; Rahni, Mohamed; Marinova, Mariya; Ben Akacha, Najla; Gargouri, Mohamed

    2015-09-01

    The feasibility of using hardwood hemicellulosic pre-hydrolysate recovered from a dissolving pulping process for Acetone-Butanol-Ethanol (ABE) fermentation has been investigated. Dilutions and detoxification methods based on flocculation and nanofiltration were tested to determine the inhibitory concentration of phenolic compounds and to evaluate the efficiency of inhibitors removal on fermentation. Flocculation carried out with ferric sulfate was the most effective method for removal of phenolics (56%) and acetic acid (80%). The impact on fermentation was significant, with an ABE production of 6.40 g/L and 4.25 g/L when using flocculation or combined nanofiltration/flocculation respectively, as compared to a non-significant production for the untreated hydrolysate. By decreasing the toxicity effect of inhibitors, this study reports for the first time that the use of these techniques is efficient to increase the inhibitory concentration threshold of phenols, from 0.3g/L in untreated hydrolysate, to 1.1g/L in flocculated and in nanofiltrated and flocculated hydrolysates.

  11. Seasonal Variation in the Inputs and Fate of Mercury in a Northern Hardwood Forest

    NASA Astrophysics Data System (ADS)

    Driscoll, C. T.; Wang, X.; Holsen, T.; Mao, H.

    2014-12-01

    Northern forest ecosystems are sensitive to atmospheric mercury deposition. In this study, we examined the fate of mercury inputs to the Huntington Wildlife Forest (HWF) of the Adirondack region of New York State, USA, by conducting a mercury mass budget over the annual cycle. Mercury exchange processes analyzed included wet deposition, dry deposition, foliar accumulation, throughfall, litterfall, soil evasion, and vertical and horizontal soil drainage loss. The mercury transport processes were quantified by integrating data collected from different sources over recent years (2004-2011). Dry mercury deposition (16.3 μg m-2 yr-1) was more important than wet mercury deposition (6.3 μg m-2 yr-1) at the HWF; most of the atmospheric mercury deposition (> 60%) was retained in the forest soils where litterfall (17.2 μg m-2 yr-1) was the major input pathway. Soil evasion (6.5 μg m-2 yr-1) was the most important mercury export mechanism, exceeding mercury fluxes in lateral and vertical drainage from soil (2.8 μg m-2 yr-1). Our analysis showed marked seasonal variation in the transfers of mercury largely mediated by annual canopy development of the forest ecosystem. The upland hardwood forest ecosystem was a net sink for atmospheric mercury deposition.

  12. Decomposition and carbon storage of hardwood and softwood branches in laboratory-scale landfills.

    PubMed

    Wang, Xiaoming; Barlaz, Morton A

    2016-07-01

    Tree branches are an important component of yard waste disposed in U.S. municipal solid waste (MSW) landfills. The objective of this study was to characterize the anaerobic biodegradability of hardwood (HW) and softwood (SW) branches under simulated but optimized landfill conditions by measuring methane (CH4) yields, decay rates, the decomposition of cellulose, hemicellulose and organic carbon, as well as carbon storage factors (CSFs). Carbon conversions to CH4 and CO2 ranged from zero to 9.5% for SWs and 17.1 to 28.5% for HWs. When lipophilic or hydrophilic compounds present in some of the HW and SW samples were extracted, some samples showed increased biochemical methane potentials (BMPs). The average CH4 yield, carbon conversion, and CSF measured here, 59.4mLCH4g(-1) dry material, 13.9%, and 0.39gcarbonstoredg(-1) dry material, respectively, represent reasonable values for use in greenhouse gas inventories in the absence of detailed wood type/species data for landfilled yard waste.

  13. Decomposition and carbon storage of hardwood and softwood branches in laboratory-scale landfills.

    PubMed

    Wang, Xiaoming; Barlaz, Morton A

    2016-07-01

    Tree branches are an important component of yard waste disposed in U.S. municipal solid waste (MSW) landfills. The objective of this study was to characterize the anaerobic biodegradability of hardwood (HW) and softwood (SW) branches under simulated but optimized landfill conditions by measuring methane (CH4) yields, decay rates, the decomposition of cellulose, hemicellulose and organic carbon, as well as carbon storage factors (CSFs). Carbon conversions to CH4 and CO2 ranged from zero to 9.5% for SWs and 17.1 to 28.5% for HWs. When lipophilic or hydrophilic compounds present in some of the HW and SW samples were extracted, some samples showed increased biochemical methane potentials (BMPs). The average CH4 yield, carbon conversion, and CSF measured here, 59.4mLCH4g(-1) dry material, 13.9%, and 0.39gcarbonstoredg(-1) dry material, respectively, represent reasonable values for use in greenhouse gas inventories in the absence of detailed wood type/species data for landfilled yard waste. PMID:27016683

  14. Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing.

    PubMed

    Staton, Margaret; Best, Teodora; Khodwekar, Sudhir; Owusu, Sandra; Xu, Tao; Xu, Yi; Jennings, Tara; Cronn, Richard; Arumuganathan, A Kathiravetpilla; Coggeshall, Mark; Gailing, Oliver; Liang, Haiying; Romero-Severson, Jeanne; Schlarbaum, Scott; Carlson, John E

    2015-01-01

    Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native hardwood tree species representing a broad phylogenetic spectrum, we used low coverage whole genome sequencing from multiplex Illumina paired ends to economically profile their genomic content. For six species, the genome content was further analyzed by flow cytometry in order to determine the nuclear genome size. Sequencing yielded a depth of 0.8X to 7.5X, from which in silico analysis yielded preliminary estimates of gene and repetitive sequence content in the genome for each species. Thousands of genomic SSRs were identified, with a clear predisposition toward dinucleotide repeats and AT-rich repeat motifs. Flanking primers were designed for SSR loci for all ten species, ranging from 891 loci in sugar maple to 18,167 in redbay. In summary, we have demonstrated that useful preliminary genome information including repeat content, gene content and useful SSR markers can be obtained at low cost and time input from a single lane of Illumina multiplex sequence.

  15. Lead reduction and redistribution in the forest floor in New Hampshire northern hardwoods.

    PubMed

    Yanai, Ruth D; Ray, David G; Siccama, Thomas G

    2004-01-01

    Because of the affinity of organic matter for lead, atmospheric loadings of this pollutant have been strongly retained in the forest floor. With the regulation of Pb emissions, loadings have decreased. We measured changes in Pb in forest floor horizons at a variety of northern hardwood sites in New Hampshire from the late 1970s to the 1990s. In all seven of the sites in which horizons were distinguished within the forest floor, Pb was found to be declining in the upper (Oie) horizon, but not in the underlying Oa and A horizons. At the Hubbard Brook Experimental Forest (HBEF), this loss from the Oie resulted in a 36% loss of Pb from the forest floor as a whole between 1976 and 1997 (p < 0.001). In contrast, in six stands in the Bartlett Experimental Forest (BEF), losses of Pb averaging >50% from the Oi and Oe horizons (p = 0.01) between 1979 and 1994 were compensated by gains in the Oa and A horizons. Similarly, at seven additional stands in the White Mountain National Forest, changes in the forest floor as a whole from 1980 to 1995 were not statistically significant (redistribution within the forest floor was not evaluated at these sites). Lead concentrations were highest in the Oe or Oie in the 1970s, but were highest in the Oa horizon in the 1990s. There was no significant pattern of Pb loss or retention as a function of stand age across all the sites.

  16. Syringyl Methacrylate, a Hardwood Lignin-Based Monomer for High-Tg Polymeric Materials

    PubMed Central

    2016-01-01

    As viable precursors to a diverse array of macromolecules, biomass-derived compounds must impart wide-ranging and precisely controllable properties to polymers. Herein, we report the synthesis and subsequent reversible addition–fragmentation chain-transfer polymerization of a new monomer, syringyl methacrylate (SM, 2,6-dimethoxyphenyl methacrylate), that can facilitate widespread property manipulations in macromolecules. Homopolymers and heteropolymers synthesized from SM and related monomers have broadly tunable and highly controllable glass transition temperatures ranging from 114 to 205 °C and zero-shear viscosities ranging from ∼0.2 kPa·s to ∼17,000 kPa·s at 220 °C, with consistent thermal stabilities. The tailorability of these properties is facilitated by the controlled polymerization kinetics of SM and the fact that one vs two o-methoxy groups negligibly affect monomer reactivity. Moreover, syringol, the precursor to SM, is an abundant component of depolymerized hardwood (e.g., oak) and graminaceous (e.g., switchgrass) lignins, making SM a potentially sustainable and low-cost candidate for tailoring macromolecular properties. PMID:27213117

  17. Development of hardwood seed zones for Tennessee using a geographic information system

    USGS Publications Warehouse

    Post, L.S.; Schlarbaum, S.E.; Van Manen, F.; Cecich, R.A.; Saxton, A.M.; Schneider, J.F.

    2003-01-01

    For species that have no or limited information on genetic variation and adaptability to nonnative sites, there is a need for seed collection guidelines based on biological, climatological, and/or geographical criteria. Twenty-eight hardwood species are currently grown for reforestation purposes at the East Tennessee State Nursery. The majority of these species have had no genetic testing to define guidelines for seed collection location and can be distributed to sites that have a very different environment than that of seed origin(s). Poor survival and/or growth may result if seedlings are not adapted to environmental conditions at the planting location. To address this problem, 30 yr of Tennessee county precipitation and minimum temperature data were analyzed and grouped using a centroid hierarchical cluster analysis. The weather data and elevational data were entered into a Geographic Information System (GIS) and separately layered over Bailey's Ecoregions to develop a seed zone system for Tennessee. The seed zones can be used as a practical guideline for collecting seeds to ensure that the resulting seedlings will be adapted to planting environments.

  18. Prioritizing bird conservation actions in the Prairie Hardwood transition of the Midwestern United States

    USGS Publications Warehouse

    Thogmartin, Wayne E.; Crimmins, Shawn M.; Pearce, Jennie

    2014-01-01

    Large-scale planning for the conservation of species is often hindered by a poor understanding of factors limiting populations. In regions with declining wildlife populations, it is critical that objective metrics of conservation success are developed to ensure that conservation actions achieve desired results. Using spatially explicit estimates of bird abundance, we evaluated several management alternatives for conserving bird populations in the Prairie Hardwood Transition of the United States. We designed landscapes conserving species at 50% of their current predicted abundance as well as landscapes attempting to achieve species population targets (which often required the doubling of current abundance). Conserving species at reduced (half of current) abundance led to few conservation conflicts. However, because of extensive modification of the landscape to suit human use, strategies for achieving regional population targets for forest bird species would be difficult under even ideal circumstances, and even more so if maintenance of grassland bird populations is also desired. Our results indicated that large-scale restoration of agricultural lands to native grassland and forest habitats may be the most productive conservation action for increasing bird population sizes but the level of landscape transition required to approach target bird population sizes may be societally unacceptable.

  19. Results of a community-university partnership to reduce deadly hazards in hardwood floor finishing.

    PubMed

    Azaroff, Lenore S; Nguyen, Hoa Mai; Do, Tuan; Gore, Rebecca; Goldstein-Gelb, Marcy

    2011-08-01

    A community-university partnership used community-based participatory research (CBPR) to design, implement, and evaluate a multi-cultural public health campaign to eliminate flammable products and reduce use of products high in volatile organic compounds (VOCs) in hardwood floor finishing in Massachusetts. Leading participants were Vietnamese-American organizations and businesses. Following the public health campaign, a multi-lingual survey of self-reported experiences with fires, product use, exposure to outreach activities, and changes made, was conducted with floor finishers. One hundred nine floor finishers responded. Over 40% reported fires at their companies' jobs, mostly caused by lacquer sealers. Over one third had heard radio or TV shows about health and safety in floor finishing, and over half reported making changes as a result of outreach. Exposure to various outreach activities was associated with reducing use of flammable products, increasing use of low-VOC products, and greater knowledge about product flammability. However, most respondents still reported using flammable products. Outreach led by community partners reached large proportions of floor finishers, was associated with use of safer products, and adds to recent work on CBPR with immigrant workers. Continued use of flammable products supports the belief that an enforceable ban was ultimately necessary to eradicate them. PMID:21267640

  20. Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania

    PubMed Central

    Gaines, Katie P.; Stanley, Jane W.; Meinzer, Frederick C.; McCulloh, Katherine A.; Woodruff, David R.; Chen, Weile; Adams, Thomas S.; Lin, Henry; Eissenstat, David M.

    2016-01-01

    We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process models. The study took place at the Susquehanna Shale Hills Critical Zone Observatory in central Pennsylvania. We asked two main questions: (i) Do trees in a mixed-hardwood, humid temperate forest in a central Pennsylvania catchment rely on deep roots for water during dry portions of the growing season? (ii) What is the role of tree genus, size, soil depth and hillslope position on the depth of water extraction by trees? Based on multiple lines of evidence, including stable isotope natural abundance, sap flux and soil moisture depletion patterns with depth, the majority of water uptake during the dry part of the growing season occurred, on average, at less than ∼60 cm soil depth throughout the catchment. While there were some trends in depth of water uptake related to genus, tree size and soil depth, water uptake was more uniformly shallow than we expected. Our results suggest that these types of forests may rely considerably on water sources that are quite shallow, even in the drier parts of the growing season. PMID:26546366

  1. Study of the Neutralization and Stabilization of a Mixed Hardwood Bio-Oil

    SciTech Connect

    Moens, L.; Black, S. K.; Myers, M. D.; Czernik, S.

    2009-01-01

    Fast-pyrolysis bio-oil that is currently produced from lignocellulosic biomass in demonstration and semicommercial plants requires significant modification to become an acceptable transportation fuel. The high acidity and chemical instability of bio-oils render them incompatible with existing petroleum refinery processes that produce gasoline and diesel fuels. To facilitate the use of bio-oil as a feedstock in a traditional refinery infrastructure, there is considerable interest in upgrading bio-oils through chemical pathways that include converting the carboxylic acids and reactive carbonyl compounds into esters and acetals using low-cost alcohols. In this article, we discuss our observations with different approaches to esterification and etherification chemistry using a crude bio-oil derived from mixed hardwoods. The high water content in crude bio-oils (ca. 20?30%) creates equilibrium limitations in the condensation reactions that hamper the upgrading process in that the neutralization and stabilization steps cannot easily be driven to completion. The lowest acid number that we were able to obtain without causing serious degradation of the flow properties of the bio-oil had a total acid number of about 20, a value that is still too high for use in a traditional petroleum refinery.

  2. Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

    PubMed Central

    Staton, Margaret; Best, Teodora; Khodwekar, Sudhir; Owusu, Sandra; Xu, Tao; Xu, Yi; Jennings, Tara; Cronn, Richard; Arumuganathan, A. Kathiravetpilla; Coggeshall, Mark; Gailing, Oliver; Liang, Haiying; Romero-Severson, Jeanne; Schlarbaum, Scott; Carlson, John E.

    2015-01-01

    Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native hardwood tree species representing a broad phylogenetic spectrum, we used low coverage whole genome sequencing from multiplex Illumina paired ends to economically profile their genomic content. For six species, the genome content was further analyzed by flow cytometry in order to determine the nuclear genome size. Sequencing yielded a depth of 0.8X to 7.5X, from which in silico analysis yielded preliminary estimates of gene and repetitive sequence content in the genome for each species. Thousands of genomic SSRs were identified, with a clear predisposition toward dinucleotide repeats and AT-rich repeat motifs. Flanking primers were designed for SSR loci for all ten species, ranging from 891 loci in sugar maple to 18,167 in redbay. In summary, we have demonstrated that useful preliminary genome information including repeat content, gene content and useful SSR markers can be obtained at low cost and time input from a single lane of Illumina multiplex sequence. PMID:26698853

  3. Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing.

    PubMed

    Staton, Margaret; Best, Teodora; Khodwekar, Sudhir; Owusu, Sandra; Xu, Tao; Xu, Yi; Jennings, Tara; Cronn, Richard; Arumuganathan, A Kathiravetpilla; Coggeshall, Mark; Gailing, Oliver; Liang, Haiying; Romero-Severson, Jeanne; Schlarbaum, Scott; Carlson, John E

    2015-01-01

    Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native hardwood tree species representing a broad phylogenetic spectrum, we used low coverage whole genome sequencing from multiplex Illumina paired ends to economically profile their genomic content. For six species, the genome content was further analyzed by flow cytometry in order to determine the nuclear genome size. Sequencing yielded a depth of 0.8X to 7.5X, from which in silico analysis yielded preliminary estimates of gene and repetitive sequence content in the genome for each species. Thousands of genomic SSRs were identified, with a clear predisposition toward dinucleotide repeats and AT-rich repeat motifs. Flanking primers were designed for SSR loci for all ten species, ranging from 891 loci in sugar maple to 18,167 in redbay. In summary, we have demonstrated that useful preliminary genome information including repeat content, gene content and useful SSR markers can be obtained at low cost and time input from a single lane of Illumina multiplex sequence. PMID:26698853

  4. Bottomland hardwood reforestation for neotropical migratory birds: are we missing the forest for the trees?

    USGS Publications Warehouse

    Twedt, D.J.; Portwood, J.

    1997-01-01

    Reforestation of bottomland hardwoods on lands managed for wildlife or timber production has historically emphasized planting heavy-seeded oaks (Quercus spp.). Although techniques have been developed for successful oak establishment, these plantings often require 5 or more years before establishing a 3-dimensional forest structure. We suggest that lands planted to fast-growing early-successional species, in combination with oaks, provide: (1) more expedient benefits to Neotropical migratory birds; (2) greater forest diversity; (3) more rapid economic return to landowners; and (4) enhanced public relations. Under good growing conditions, and with effective weed control, some fast-growing species can develop a substantial 3-dimensional forest structure in as few as 2 or 3 years. Forest-breeding Neotropical migratory birds use stands planted with early successional species several years before sites planted solely with oaks. Where desirable, succession to forests with a high proportion of oak species can be achieved on sites initially planted with fast-growing species through silvicultural management.

  5. Herbivorous insect response to group selection cutting in a southeastern bottomland hardwood forest.

    SciTech Connect

    Michael D. Ulyshen; James L. Hanula; Scott Horn; Christopher E. Moorman.

    2005-04-01

    ABSTRACT Malaise and pitfall traps were used to sample herbivorous insects in canopy gaps created by group-selection cutting in a bottomland hardwood forest in South Carolina. The traps were placed at the centers, edges, and in the forest adjacent to gaps of different sizes (0.13, 0.26, and 0.50 ha) and ages (1 and 7 yr old) during four sampling periods in 2001. Overall, the abundance and species richness of insect herbivores were greater at the centers of young gaps than at the edge of young gaps or in the forest surrounding young gaps. There were no differences in abundance or species richness among old gap locations (i.e., centers, edges, and forest), and we collected significantly more insects in young gaps than old gaps. The insect communities in old gaps were more similar to the forests surrounding them than young gap communities were to their respective forest locations, but the insect communities in the two forests locations (surrounding young and old gaps) had the highest percent similarity of all. Although both abundance and richness increased in the centers of young gaps with increasing gap size, these differences were not significant.Weattribute the increased numbers of herbivorous insects to the greater abundance of herbaceous plants available in young gaps.

  6. Results of a community-university partnership to reduce deadly hazards in hardwood floor finishing.

    PubMed

    Azaroff, Lenore S; Nguyen, Hoa Mai; Do, Tuan; Gore, Rebecca; Goldstein-Gelb, Marcy

    2011-08-01

    A community-university partnership used community-based participatory research (CBPR) to design, implement, and evaluate a multi-cultural public health campaign to eliminate flammable products and reduce use of products high in volatile organic compounds (VOCs) in hardwood floor finishing in Massachusetts. Leading participants were Vietnamese-American organizations and businesses. Following the public health campaign, a multi-lingual survey of self-reported experiences with fires, product use, exposure to outreach activities, and changes made, was conducted with floor finishers. One hundred nine floor finishers responded. Over 40% reported fires at their companies' jobs, mostly caused by lacquer sealers. Over one third had heard radio or TV shows about health and safety in floor finishing, and over half reported making changes as a result of outreach. Exposure to various outreach activities was associated with reducing use of flammable products, increasing use of low-VOC products, and greater knowledge about product flammability. However, most respondents still reported using flammable products. Outreach led by community partners reached large proportions of floor finishers, was associated with use of safer products, and adds to recent work on CBPR with immigrant workers. Continued use of flammable products supports the belief that an enforceable ban was ultimately necessary to eradicate them.

  7. Changes in forest floor composition and chemistry along an invasive earthworm gradient in a hardwood forest

    NASA Astrophysics Data System (ADS)

    Jourdain, J. N.; Filley, T. R.; Top, S. M.; Thayer, C.; Johnson, A.; Jenkins, M.; Welle, P.; Zurn-Birkhimer, S.; Kroeger, T.; Gemscholars

    2010-12-01

    Recent studies have demonstrated how invasive European earthworm species have caused large and long lasting perturbations to forest floor dynamics and soil composition in many northern hardwood forests. The type of perturbation is driven primarily by the composition and activity of the invasive species and the original state of the forest system. Over the past 4 years we have investigated an invasive earthworm front moving through the Ojibwa Red Lake Reservation (Minnesota). Significant shifts in litter and organic horizon mass were observed, similar to other gradients identified in the region, but the species of earthworms exhibited differences compared to other reservation lands in the region--possibly driven by the availability of recreation fishing near to the sites. Sharp gradients in earthworm abundance were observed exhibiting shifts from 600- 900 individuals per meter square to no observed worms within only 500 meters. The gradients in earthworm activity also influenced decay rates of litter, as was observed by placement of litter decay bags across the gradient. Our findings demonstrate the tenuous nature of many tribal reservation forests and point to the need for policies to address spread on such species to minimize impacts to soil carbon stocks as well as culturally important plant species.

  8. Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome

    PubMed Central

    Beckers, Bram; Op De Beeck, Michiel; Weyens, Nele; Van Acker, Rebecca; Van Montagu, Marc; Boerjan, Wout; Vangronsveld, Jaco

    2016-01-01

    Cinnamoyl-CoA reductase (CCR), an enzyme central to the lignin biosynthetic pathway, represents a promising biotechnological target to reduce lignin levels and to improve the commercial viability of lignocellulosic biomass. However, silencing of the CCR gene results in considerable flux changes of the general and monolignol-specific lignin pathways, ultimately leading to the accumulation of various extractable phenolic compounds in the xylem. Here, we evaluated host genotype-dependent effects of field-grown, CCR-down-regulated poplar trees (Populus tremula × Populus alba) on the bacterial rhizosphere microbiome and the endosphere microbiome, namely the microbiota present in roots, stems, and leaves. Plant-associated bacteria were isolated from all plant compartments by selective isolation and enrichment techniques with specific phenolic carbon sources (such as ferulic acid) that are up-regulated in CCR-deficient poplar trees. The bacterial microbiomes present in the endosphere were highly responsive to the CCR-deficient poplar genotype with remarkably different metabolic capacities and associated community structures compared with the WT trees. In contrast, the rhizosphere microbiome of CCR-deficient and WT poplar trees featured highly overlapping bacterial community structures and metabolic capacities. We demonstrate the host genotype modulation of the plant microbiome by minute genetic variations in the plant genome. Hence, these interactions need to be taken into consideration to understand the full consequences of plant metabolic pathway engineering and its relation with the environment and the intended genetic improvement. PMID:26755604

  9. Metabolic Responses of Poplar to Apripona germari (Hope) as Revealed by Metabolite Profiling

    PubMed Central

    Wang, Lijuan; Qu, Liangjian; Zhang, Liwei; Hu, Jianjun; Tang, Fang; Lu, Mengzhu

    2016-01-01

    Plants have developed biochemical responses to adapt to biotic stress. To characterize the resistance mechanisms in poplar tree against Apripona germari, comprehensive metabolomic changes of poplar bark and xylem in response to A. germari infection were examined by gas chromatography time-of-flight mass spectrometry (GC–TOF/MS). It was found that, four days after feeding (stage I), A. germari infection brought about changes in various metabolites, such as phenolics, amino acids and sugars in both bark and xylem. Quinic acid, epicatechin, epigallocatechin and salicin might play a role in resistance response in bark, while coniferyl alcohol, ferulic acid and salicin contribute resistance in xylem. At feeding stages II when the larvae fed for more than one month, fewer defensive metabolites were induced, but levels of many intermediates of glycolysis and the tricarboxylic acid (TCA) cycle were reduced, especially in xylem. These results suggested that the defense strategies against A. germari might depend mainly on the early defense responses in poplar. In addition, it was found that bark and xylem in infected trees accumulated higher levels of salicylic acid and 4-aminobutyric acid, respectively, these tissues displaying a direct and systemic reaction against A. germari. However, the actual role of the two metabolites in A. germari-induced defense in poplar requires further investigation. PMID:27331808

  10. Poplar trees for phytoremediation of high levels of nitrate and applications in bioenergy.

    PubMed

    Castro-Rodríguez, Vanessa; García-Gutiérrez, Angel; Canales, Javier; Cañas, Rafael A; Kirby, Edward G; Avila, Concepción; Cánovas, Francisco M

    2016-01-01

    The utilization of high amounts of nitrate fertilizers for crop yield leads to nitrate pollution of ground and surface waters. In this study, we report the assimilation and utilization of nitrate luxuriant levels, 20 times more than the highest N fertilizer application in Europe, by transgenic poplars overexpressing a cytosolic glutamine synthetase (GS1). In comparison with the wild-type controls, transgenic plants grown under high N levels exhibited increased biomass (171.6%) and accumulated higher levels of proteins, chlorophylls and total sugars such as glucose, fructose and sucrose. These plants also exhibited greater nitrogen-use efficiency particularly in young leaves, suggesting that they are able to translocate most of the resources to the above-ground part of the plant to produce biomass. The transgenic poplar transcriptome was greatly affected in response to N availability with 1237 genes differentially regulated in high N, while only 632 genes were differentially expressed in untransformed plants. Many of these genes are essential in the adaptation and response against N excess and include those involved in photosynthesis, cell wall formation and phenylpropanoid biosynthesis. Cellulose production in the transgenic plants was fivefold higher than in control plants, indicating that transgenic poplars represent a potential feedstock for applications in bioenergy. In conclusion, our results show that GS transgenic poplars can be used not only for improving growth and biomass production but also as an important resource for potential phytoremediation of nitrate pollution.

  11. Metabolic Responses of Poplar to Apripona germari (Hope) as Revealed by Metabolite Profiling.

    PubMed

    Wang, Lijuan; Qu, Liangjian; Zhang, Liwei; Hu, Jianjun; Tang, Fang; Lu, Mengzhu

    2016-01-01

    Plants have developed biochemical responses to adapt to biotic stress. To characterize the resistance mechanisms in poplar tree against Apripona germari, comprehensive metabolomic changes of poplar bark and xylem in response to A. germari infection were examined by gas chromatography time-of-flight mass spectrometry (GC-TOF/MS). It was found that, four days after feeding (stage I), A. germari infection brought about changes in various metabolites, such as phenolics, amino acids and sugars in both bark and xylem. Quinic acid, epicatechin, epigallocatechin and salicin might play a role in resistance response in bark, while coniferyl alcohol, ferulic acid and salicin contribute resistance in xylem. At feeding stages II when the larvae fed for more than one month, fewer defensive metabolites were induced, but levels of many intermediates of glycolysis and the tricarboxylic acid (TCA) cycle were reduced, especially in xylem. These results suggested that the defense strategies against A. germari might depend mainly on the early defense responses in poplar. In addition, it was found that bark and xylem in infected trees accumulated higher levels of salicylic acid and 4-aminobutyric acid, respectively, these tissues displaying a direct and systemic reaction against A. germari. However, the actual role of the two metabolites in A. germari-induced defense in poplar requires further investigation. PMID:27331808

  12. Effector-Mining in the Poplar Rust Fungus Melampsora larici-populina Secretome.

    PubMed

    Lorrain, Cécile; Hecker, Arnaud; Duplessis, Sébastien

    2015-01-01

    The poplar leaf rust fungus, Melampsora larici-populina has been established as a tree-microbe interaction model. Understanding the molecular mechanisms controlling infection by pathogens appears essential for durable management of tree plantations. In biotrophic plant-parasites, effectors are known to condition host cell colonization. Thus, investigation of candidate secreted effector proteins (CSEPs) is a major goal in the poplar-poplar rust interaction. Unlike oomycetes, fungal effectors do not share conserved motifs and candidate prediction relies on a set of a priori criteria established from reported bona fide effectors. Secretome prediction, genome-wide analysis of gene families and transcriptomics of M. larici-populina have led to catalogs of more than a thousand secreted proteins. Automatized effector-mining pipelines hold great promise for rapid and systematic identification and prioritization of CSEPs for functional characterization. In this review, we report on and discuss the current status of the poplar rust fungus secretome and prediction of candidate effectors from this species. PMID:26697026

  13. Association analysis identifies Melampsora ×columbiana poplar leaf rust resistance SNPs.

    PubMed

    La Mantia, Jonathan; Klápště, Jaroslav; El-Kassaby, Yousry A; Azam, Shofiul; Guy, Robert D; Douglas, Carl J; Mansfield, Shawn D; Hamelin, Richard

    2013-01-01

    Populus species are currently being domesticated through intensive time- and resource-dependent programs for utilization in phytoremediation, wood and paper products, and conversion to biofuels. Poplar leaf rust disease can greatly reduce wood volume. Genetic resistance is effective in reducing economic losses but major resistance loci have been race-specific and can be readily defeated by the pathogen. Developing durable disease resistance requires the identification of non-race-specific loci. In the presented study, area under the disease progress curve was calculated from natural infection of Melampsora ×columbiana in three consecutive years. Association analysis was performed using 412 P. trichocarpa clones genotyped with 29,355 SNPs covering 3,543 genes. We found 40 SNPs within 26 unique genes significantly associated (permutated P<0.05) with poplar rust severity. Moreover, two SNPs were repeated in all three years suggesting non-race-specificity and three additional SNPs were differentially expressed in other poplar rust interactions. These five SNPs were found in genes that have orthologs in Arabidopsis with functionality in pathogen induced transcriptome reprogramming, Ca²⁺/calmodulin and salicylic acid signaling, and tolerance to reactive oxygen species. The additive effect of non-R gene functional variants may constitute high levels of durable poplar leaf rust resistance. Therefore, these findings are of significance for speeding the genetic improvement of this long-lived, economically important organism.

  14. Association Analysis Identifies Melampsora ×columbiana Poplar Leaf Rust Resistance SNPs

    PubMed Central

    La Mantia, Jonathan; Klápště, Jaroslav; El-Kassaby, Yousry A.; Azam, Shofiul; Guy, Robert D.; Douglas, Carl J.; Mansfield, Shawn D.; Hamelin, Richard

    2013-01-01

    Populus species are currently being domesticated through intensive time- and resource-dependent programs for utilization in phytoremediation, wood and paper products, and conversion to biofuels. Poplar leaf rust disease can greatly reduce wood volume. Genetic resistance is effective in reducing economic losses but major resistance loci have been race-specific and can be readily defeated by the pathogen. Developing durable disease resistance requires the identification of non-race-specific loci. In the presented study, area under the disease progress curve was calculated from natural infection of Melampsora ×columbiana in three consecutive years. Association analysis was performed using 412 P. trichocarpa clones genotyped with 29,355 SNPs covering 3,543 genes. We found 40 SNPs within 26 unique genes significantly associated (permutated P<0.05) with poplar rust severity. Moreover, two SNPs were repeated in all three years suggesting non-race-specificity and three additional SNPs were differentially expressed in other poplar rust interactions. These five SNPs were found in genes that have orthologs in Arabidopsis with functionality in pathogen induced transcriptome reprogramming, Ca2+/calmodulin and salicylic acid signaling, and tolerance to reactive oxygen species. The additive effect of non-R gene functional variants may constitute high levels of durable poplar leaf rust resistance. Therefore, these findings are of significance for speeding the genetic improvement of this long-lived, economically important organism. PMID:24236018

  15. Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites.

    PubMed

    Foulon, Julie; Zappelini, Cyril; Durand, Alexis; Valot, Benoit; Girardclos, Olivier; Blaudez, Damien; Chalot, Michel

    2016-11-15

    The aim of the present study is to deepen the current understanding of the microbial communities at two poplar phytomanagement sites to reveal the environmental factors that drive the abundance, diversity and composition of microbial communities. A soil analysis revealed that the two soils displayed contrasting physico-chemical characteristics, with significant lower pH and higher Cd, Zn and Mn CaCl2-extractable fractions at Leforest site, compared with Pierrelaye site. The fungal and bacterial community profiles in the poplar roots and soils were assessed through Illumina MiSeq sequencing. Diversity indices and β-diversity measures illustrated that the root microbial communities were well separated from the soil microbial communities at both sites. A detailed study of the fungal composition showed that Ascomycota dominated the overall fungal communities on poplar soil, the root samples at Pierrelaye, and the unplanted soil at the experimental sites. Conversely, Basidiomycota accounted for a much higher percentage of the fungal community in poplar root samples from the Leforest site. The root bacterial communities were dominated by Alphaproteobacteria and Actinobacteria, and the soil samples were dominated by Alphaproteobacteria and Acidobacteria. The occurrence and dominance of the ectomycorrhizal community at Leforest but not at Pierrelaye is the major feature of our data set. Overall, ectomycorrhizal root symbionts appeared to be highly constrained by soil characteristics at the phytomanagement sites. Our data support the view that mycorrhizal inoculation is needed in highly stressed and nutrient-poor environments.

  16. Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome.

    PubMed

    Beckers, Bram; Op De Beeck, Michiel; Weyens, Nele; Van Acker, Rebecca; Van Montagu, Marc; Boerjan, Wout; Vangronsveld, Jaco

    2016-02-23

    Cinnamoyl-CoA reductase (CCR), an enzyme central to the lignin biosynthetic pathway, represents a promising biotechnological target to reduce lignin levels and to improve the commercial viability of lignocellulosic biomass. However, silencing of the CCR gene results in considerable flux changes of the general and monolignol-specific lignin pathways, ultimately leading to the accumulation of various extractable phenolic compounds in the xylem. Here, we evaluated host genotype-dependent effects of field-grown, CCR-down-regulated poplar trees (Populus tremula × Populus alba) on the bacterial rhizosphere microbiome and the endosphere microbiome, namely the microbiota present in roots, stems, and leaves. Plant-associated bacteria were isolated from all plant compartments by selective isolation and enrichment techniques with specific phenolic carbon sources (such as ferulic acid) that are up-regulated in CCR-deficient poplar trees. The bacterial microbiomes present in the endosphere were highly responsive to the CCR-deficient poplar genotype with remarkably different metabolic capacities and associated community structures compared with the WT trees. In contrast, the rhizosphere microbiome of CCR-deficient and WT poplar trees featured highly overlapping bacterial community structures and metabolic capacities. We demonstrate the host genotype modulation of the plant microbiome by minute genetic variations in the plant genome. Hence, these interactions need to be taken into consideration to understand the full consequences of plant metabolic pathway engineering and its relation with the environment and the intended genetic improvement. PMID:26755604

  17. Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome.

    PubMed

    Beckers, Bram; Op De Beeck, Michiel; Weyens, Nele; Van Acker, Rebecca; Van Montagu, Marc; Boerjan, Wout; Vangronsveld, Jaco

    2016-02-23

    Cinnamoyl-CoA reductase (CCR), an enzyme central to the lignin biosynthetic pathway, represents a promising biotechnological target to reduce lignin levels and to improve the commercial viability of lignocellulosic biomass. However, silencing of the CCR gene results in considerable flux changes of the general and monolignol-specific lignin pathways, ultimately leading to the accumulation of various extractable phenolic compounds in the xylem. Here, we evaluated host genotype-dependent effects of field-grown, CCR-down-regulated poplar trees (Populus tremula × Populus alba) on the bacterial rhizosphere microbiome and the endosphere microbiome, namely the microbiota present in roots, stems, and leaves. Plant-associated bacteria were isolated from all plant compartments by selective isolation and enrichment techniques with specific phenolic carbon sources (such as ferulic acid) that are up-regulated in CCR-deficient poplar trees. The bacterial microbiomes present in the endosphere were highly responsive to the CCR-deficient poplar genotype with remarkably different metabolic capacities and associated community structures compared with the WT trees. In contrast, the rhizosphere microbiome of CCR-deficient and WT poplar trees featured highly overlapping bacterial community structures and metabolic capacities. We demonstrate the host genotype modulation of the plant microbiome by minute genetic variations in the plant genome. Hence, these interactions need to be taken into consideration to understand the full consequences of plant metabolic pathway engineering and its relation with the environment and the intended genetic improvement.

  18. Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure.

    PubMed

    Barrès, Benoît; Dutech, Cyril; Andrieux, Axelle; Halkett, Fabien; Frey, Pascal

    2012-10-01

    Fungal plant pathogens, especially rust fungi (Pucciniales), are well known for their complex life cycles, which include phases of sexual and asexual reproduction. The effect of asexual multiplication on population genetic diversity has been investigated in the poplar rust fungus Melampsora larici-populina using a nested hierarchical sampling scheme. Four hierarchical levels were considered: leaf, twig, tree and site. Both cultivated and wild poplar stands were sampled at two time points at the start and end of rust epidemics. A total of 641 fungal isolates was analysed using nine microsatellite markers. This study revealed that the genetic signature of asexual multiplication in the wild poplar stand was seen only at lower hierarchical levels (leaf and twig). Moreover, we observed an erosion of clonal structure through time, with an increase in both gene and genotypic diversity. New genotypes contributed to host infection over time, which demonstrates the importance of allo-infection in the epidemic process in this host-pathogen system. Compared with the wild stands, the nearly lack of detection of clonal structure in the cultivated stands reflects the higher infection level on cultivated poplars. More generally, this genetic analysis illustrates the utility of population genetics approach for elucidating the proportion of asexual reproduction in the multiplication of isolates during an epidemic, and for proper quantification of asexual dispersal in plant pathogens.

  19. Storm water control plan for the Lower East Fork Poplar Creek Operable Unit, Oak Ridge, Tennessee

    SciTech Connect

    1996-04-01

    This document provides the Environmental Restoration Program with information about the erosion and sediment control, storm water management, maintenance, and reporting and record keeping practices to be employed during Phase II of the remediation project for the Lower East Fork Poplar Creek (LEFPC) Operable Unit.

  20. Isoprene in poplar emissions: effects on new particle formation and OH concentrations

    NASA Astrophysics Data System (ADS)

    Kiendler-Scharr, A.; Andres, S.; Bachner, M.; Behnke, K.; Broch, S.; Hofzumahaus, A.; Holland, F.; Kleist, E.; Mentel, T. F.; Rubach, F.; Springer, M.; Steitz, B.; Tillmann, R.; Wahner, A.; Schnitzler, J.-P.; Wildt, J.

    2011-08-01

    Stress-induced volatile organic compound (VOC) emissions from transgenic Grey poplar, modified in isoprene emission potential were used for the investigation of photochemical secondary organic aerosol (SOA) formation. Nucleation rates of up to 3600 cm-3 s-1 were observed in our experiments. In poplar, acute ozone stress induces the emission of a wide array of VOCs dominated by sesquiterpenes and aromatic VOCs. Constitutive light-dependent emission of isoprene ranged between 66 nmol m-2 s-1 in non-transgenic controls (wild type WT) and nearly zero (<0.5 nmol m-2 s-1) in isoprene emission-repressed lines (line RA22), respectively. In the presence of isoprene new particle formation was suppressed compared to non-isoprene containing VOC mixtures. Compared to isoprene/monoterpene systems emitted from other plants the suppression of nucleation by isoprene was less effective for the VOC mixture emitted from stressed poplar. This is explained by the observed high efficiency of new particle formation for emissions from stressed poplar. Direct measurements of OH in the reaction chamber revealed that the steady state concentration of OH is lower in the presence of isoprene than in the absence of isoprene, supporting the hypothesis that isoprenes' suppressing effect on nucleation is related to radical chemistry. In order to test whether isoprene contributes to SOA mass formation, fully deuterated isoprene (C5D8) was added to the stress-induced emission profile of an isoprene free poplar mutant. Mass spectral analysis showed that, despite the isoprene-induced suppression of particle formation, fractions of deuterated isoprene were incorporated into the SOA. A fractional mass yield of 2.3 % of isoprene was observed. Future emission changes due to land use and climate change may therefore affect both gas phase oxidation capacity and new particle number formation.

  1. Isoprene in poplar emissions: effects on new particle formation and OH concentrations

    NASA Astrophysics Data System (ADS)

    Kiendler-Scharr, A.; Andres, S.; Bachner, M.; Behnke, K.; Broch, S.; Hofzumahaus, A.; Holland, F.; Kleist, E.; Mentel, T. F.; Rubach, F.; Springer, M.; Steitz, B.; Tillmann, R.; Wahner, A.; Schnitzler, J.-P.; Wildt, J.

    2012-01-01

    Stress-induced volatile organic compound (VOC) emissions from transgenic Grey poplar modified in isoprene emission potential were used for the investigation of photochemical secondary organic aerosol (SOA) formation. In poplar, acute ozone stress induces the emission of a wide array of VOCs dominated by sesquiterpenes and aromatic VOCs. Constitutive light-dependent emission of isoprene ranged between 66 nmol m-2 s-1 in non-transgenic controls (wild type WT) and nearly zero (<0.5 nmol m-2 s-1) in isoprene emission-repressed plants (line RA22), respectively. Nucleation rates of up to 3600 cm-3 s-1 were observed in our experiments. In the presence of isoprene new particle formation was suppressed compared to non-isoprene containing VOC mixtures. Compared to isoprene/monoterpene systems emitted from other plants the suppression of nucleation by isoprene was less effective for the VOC mixture emitted from stressed poplar. This is explained by the observed high efficiency of new particle formation for emissions from stressed poplar. Direct measurements of OH in the reaction chamber revealed that the steady state concentration of OH is lower in the presence of isoprene than in the absence of isoprene, supporting the hypothesis that isoprenes' suppressing effect on nucleation is related to radical chemistry. In order to test whether isoprene contributes to SOA mass formation, fully deuterated isoprene (C5D8) was added to the stress-induced emission profile of an isoprene free poplar mutant. Mass spectral analysis showed that, despite the isoprene-induced suppression of particle formation, fractions of deuterated isoprene were incorporated into the SOA. A fractional mass yield of 2.3% of isoprene was observed. Future emission changes due to land use and climate change may therefore affect both gas phase oxidation capacity and new particle number formation.

  2. A NAC domain protein family contributing to the regulation of wood formation in poplar.

    PubMed

    Ohtani, Misato; Nishikubo, Nobuyuki; Xu, Bo; Yamaguchi, Masatoshi; Mitsuda, Nobutaka; Goué, Nadia; Shi, Fusun; Ohme-Takagi, Masaru; Demura, Taku

    2011-08-01

    Wood harvested from trees is one of the most widely utilized natural materials on our planet. Recent environmental issues have prompted an increase in the demand for wood, especially as a cost-effective and renewable resource for industry and energy, so it is important to understand the process of wood formation. In the present study, we focused on poplar (Populus trichocarpa) NAC domain protein genes which are homologous to well-known Arabidopsis transcription factors regulating the differentiation of xylem vessels and fiber cells. From phylogenetic analysis, we isolated 16 poplar NAC domain protein genes, and named them PtVNS (VND-, NST/SND- and SMB-related proteins) genes. Expression analysis revealed that 12 PtVNS (also called PtrWND) genes including both VND and NST groups were expressed in developing xylem tissue and phloem fiber, whereas in primary xylem vessels, only PtVNS/PtrWND genes of the VND group were expressed. By using the post-translational induction system of Arabidopsis VND7, a master regulator of xylem vessel element differentiation, many poplar genes functioning in xylem vessel differentiation downstream from NAC domain protein genes were identified. Transient expression assays showed the variation in PtVNS/PtrWND transactivation activity toward downstream genes, even between duplicate gene pairs. Furthermore, overexpression of PtVNS/PtrWND genes induced ectopic secondary wall thickening in poplar leaves as well as in Arabidopsis seedlings with different levels of induction efficiency according to the gene. These results suggest that wood formation in poplar is regulated by cooperative functions of the NAC domain proteins.

  3. Responses of energy partitioning and surface resistance to drought in a poplar plantation in northern China

    NASA Astrophysics Data System (ADS)

    Kang, M.; Zhang, Z.; Noormets, A.; Fang, X.; Zha, T.; Zhou, J.; Sun, G.; McNulty, S.; Chen, J.

    2015-01-01

    Poplar (Populus sp.) plantations have been used broadly for combating desertification, urban greening, and paper and wood production in northern China. However, given the high water use by the species and the regional dry environment, the long-term sustainability of these plantations needs to be evaluated. Currently, the understanding of energy partitioning and canopy resistance to water vapor and CO2 in poplar plantations is limited, impeding an accurate assessment of their true ecosystem functions. This study examined the variability of canopy bulk resistance parameters and energy partitioning over a four-year period encompassing both dry and wet conditions in a poplar (Populus euramericana CV. "74 / 76") plantation ecosystem located in northern China. Available energy (Net radiation Rn minus Soil Heat Flux, G) partitioning to latent (LE) and sensible (H) heat was responsive to climatological drought, with LE/(Rn-G) ranging from 62% in wet years (e.g. 2007 and 2008) to 53% in dry years (e.g. 2006 and 2009), and H/(Rn-G) from 25 to 33% between wet and dry years. Correspondingly, the Bowen ratio (β=H/LE) were 0.83 and 1.57. Surface resistance (Rs) had the greatest response to drought (+43%), but the aerodynamic and climatological resistances did not change significantly (p > 0.05). Partial correlation analysis indicated that Rs was the dominant factor in controlling the Bowen ratio. Furthermore, Rs was the major factor controlling LE during the growing season, even in wet years, as indicated by the decoupling coefficient (Ω = 0.45 and 0.39 in wet and dry years, respectively), and the LE / LEeq ratio ranged from 0.81 and 0.68 in wet and dry years, respectively. In general, the dry surface conditions dominated in this poplar plantation ecosystem regardless of soil water availability suggesting that fast-growing and water use-intensive species like poplar plantations are poorly adapted for the water limited region.

  4. Photosynthesis and substrate supply for isoprene biosynthesis in poplar leaves

    NASA Astrophysics Data System (ADS)

    Magel, E.; Mayrhofer, S.; Müller, A.; Zimmer, I.; Hampp, R.; Schnitzler, J.-P.

    Gray poplar leaves emit high amounts of isoprene. In this context, we investigated the degree to which photosynthesis delivers necessary precursors for chloroplast isoprene biosynthesis, and whether this energy-consuming pathway could be involved in protecting the photosynthetic electron transport system. Such protection could result from consumption of a surplus in ATP and NADPH, generated under constricted net assimilation caused by high leaf temperatures and high light intensities. During the course of the day triose phosphate (TP) and dimethylallyl diphosphate (DMADP) concentrations showed pronounced diurnal variations closely related to net assimilation and isoprene emission rates, while other variables, e.g. energy (ATP/ADP) and redox (NADPH/NADP) ratio, as well as phosphoenolpyruvate (PEP) and pyruvate strongly scattered related to changing temperature and light intensities. Intra-day positive correlations were found mainly between leaf concentrations of TP and DMADP, and sucrose, ATP/ADP ratio and net assimilation rates. Under non-saturating light (200-400 μmol photons m -2 s -1), leaf DMADP pools were positively correlated mainly with PEP, starch, and fructose 2,6-bisphosphate (F26BP). Under saturating light, correlations improved and additionally involved sucrose, TP, and the ratio of NADPH/NADP. Study of temperature response curves showed that net assimilation and isoprene emission were negatively correlated to each other. This disconnection was mostly visible by the transient change of DMADP contents with maximum levels at 25 °C. At higher temperatures, declining pools of DMADP, TP and pyruvate indicated that DMADP consumption overcompensated DMADP production resulting in highest isoprene emission rates at declining pool sizes of precursors. In parallel to the reduction of net assimilation increases of NADPH/NADP and ATP/ADP ratios also portended that the MEP pathway dissipates a surplus of ATP and NADPH which cannot be used for carbon reduction under

  5. Abaxial Greening Phenotype in Hybrid Aspen.

    PubMed

    Nowak, Julia S; Douglas, Carl J; Cronk, Quentin C B

    2013-04-24

    The typical angiosperm leaf, as in Arabidopsis, is bifacial consisting of top (adaxial) and bottom (abaxial) surfaces readily distinguishable by the underlying cell type (palisade and spongy mesophyll, respectively). Species of the genus Populus have leaves that are either conventionally bifacial or isobilateral. Isobilateral leaves have palisade mesophyll on the top and bottom of the leaf, making the two sides virtually indistinguishable at the macroscopic level. In poplars this has been termed the "abaxial greening" phenotype. Previous work has implicated ASYMMETRIC LEAVES1 (AS1) as an essential determinant of palisade mesophyll development. This gene, as well as other genes (84 in all) putatively involved in setting the dorsiventral axis of leaves, were investigated in two Populus species: black cottonwood (Populus trichocarpa) and hybrid aspen (P. tremula x tremuloides), representative of each leaf type (bifacial and isobilateral, respectively). Poplar orthologs of AS1 have significantly higher expression in aspen leaf blade and lower in the petiole, suggestive of a potential role in the isobilateral leaf phenotype consistent with the previously observed phenotypes. Furthermore, an ABERRANT TESTA SHAPE (ATS) ortholog has significantly lower expression in aspen leaf tissue, also suggesting a possible contribution of this gene to abaxial greening.

  6. Poplar breeding and testing strategies in the NC US: Demonstration of potential yield and consideration of future research needs.

    SciTech Connect

    Riemenschneider, Don; Berguson, William E; Dickmann, Don; Hall, Richard

    2004-06-30

    The objective of this project was to extend previous poplar breeding and selection in the NC US by implementing a regional testing system with multiple test locations in Minnesota, Iowa, Wisconsin and Michigan.

  7. The Atlantic-Mediterranean watershed, river basins and glacial history shape the genetic structure of Iberian poplars.

    PubMed

    Macaya-Sanz, D; Heuertz, M; López-de-Heredia, U; De-Lucas, A I; Hidalgo, E; Maestro, C; Prada, A; Alía, R; González-Martínez, S C

    2012-07-01

    Recent phylogeographic studies have elucidated the effects of Pleistocene glaciations and of Pre-Pleistocene events on populations from glacial refuge areas. This study investigates those effects in riparian trees (Populus spp.), whose particular features may convey enhanced resistance to climate fluctuations. We analysed the phylogeographic structure of 44 white (Populus alba), 13 black (Populus nigra) and two grey (Populus x canescens) poplar populations in the Iberian Peninsula using plastid DNA microsatellites and sequences. We also assessed fine-scale spatial genetic structure and the extent of clonality in four white and one grey poplar populations using nuclear microsatellites and we determined quantitative genetic differentiation (Q(ST) ) for growth traits in white poplar. Black poplar displayed higher regional diversity and lower differentiation than white poplar, reflecting its higher cold-tolerance. The dependence of white poplar on phreatic water was evidenced by strong differentiation between the Atlantic and Mediterranean drainage basins and among river basins, and by weaker isolation by distance within than among river basins. Our results suggest confinement to the lower river courses during glacial periods and moderate interglacial gene exchange along coastlines. In northern Iberian river basins, white poplar had lower diversity, fewer private haplotypes and larger clonal assemblies than in southern basins, indicating a stronger effect of glaciations in the north. Despite strong genetic structure and frequent asexual propagation in white poplar, some growth traits displayed adaptive divergence between drainage and river basins (Q(ST) >F(ST)), highlighting the remarkable capacity of riparian tree populations to adapt to regional environmental conditions.

  8. Analyzing the impact of climate and management factors on the productivity and soil carbon sequestration of poplar plantations.

    PubMed

    Wang, Dan; Fan, Jiazhi; Jing, Panpan; Cheng, Yong; Ruan, Honghua

    2016-01-01

    It is crucial to investigate how climate and management factors impact poplar plantation production and soil carbon sequestration interactively. We extracted above-ground net primary production (ANPP), climate and management factors from peer-reviewed journal articles and analyzed impact of management factor and climate on the mean annual increment (MAI) of poplar ANPP statistically. Previously validated mechanistic model (ED) is used to perform case simulations for managed poplar plantations under different harvesting rotations. The meta-analysis indicate that the dry matter MAI was 6.3 Mg ha(-1) yr(-1) (n=641, sd=4.9) globally, and 5.1 (n=292, sd=4.0), 8.1 (n=224, sd=4.7) and 4.4 Mg ha(-1) yr(-1) (n=125, sd=3.2) in Europe, the US and China, respectively. Poplar MAI showed a significant response to GDD, precipitation and planting density and formed a quadratic relationship with stand age. The low annual production for poplar globally was probably caused by suboptimal water availability, rotation length and planting density. SEM attributes the variance of poplar growth rate more to climate than to management effects. Case simulations indicated that longer rotation cycle significantly increased soil carbon storage. Findings of this work suggests that management factor of rotation cycle alone could have dramatic impact on the above ground growth, as well as on the soil carbon sequestration of poplar plantations and will be helpful to quantify the long-term carbon sequestration through short rotation plantation. The findings of this study are useful in guiding further research, policy and management decisions towards sustainable poplar plantations.

  9. Identification of a novel hydroxylated metabolite of 2,2',3,5',6-pentachlorobiphenyl formed in whole poplar plants.

    PubMed

    Ma, Cunxian; Zhai, Guangshu; Wu, Huimin; Kania-Korwel, Izabela; Lehmler, Hans-Joachim; Schnoor, Jerald L

    2016-02-01

    Polychlorinated biphenyls (PCBs) are a group of persistent organic pollutants consisting of 209 congeners. Oxidation of several PCB congeners to hydroxylated PCBs (OH-PCBs) in whole poplar plants has been reported before. Moreover, 2,2',3,5',6-pentachlorobiphenyl (PCB95), as a chiral congener, has been previously shown to be atropselectively taken up and transformed in whole poplar plants. The objective of this study was to determine if PCB95 is atropselectively metabolized to OH-PCBs in whole poplar plants. Two hydroxylated PCB95s were detected by high-performance liquid chromatography-mass spectrometry in the roots of whole poplar plants exposed to racemic PCB95 for 30 days. The major metabolite was confirmed to be 4'-hydroxy-2,2',3,5',6-pentachlorobiphenyl (4'-OH-PCB95) by gas chromatography-mass spectrometry (GC-MS) using an authentic reference standard. Enantioselective analysis showed that 4'-OH-PCB95 was formed atropselectively, with the atropisomer eluting second on the Nucleodex β-PM column (E2-4'-OH-PCB95) being slightly more abundant in the roots of whole poplar plants. Therefore, PCB95 can at least be metabolized into 4'-OH-PCB95 and another unknown hydroxylated PCB95 (as a minor metabolite) in whole poplar plants. Both atropisomers of 4'-OH-PCB95 are formed, but E2-4'-OH-PCB95 has greater atropisomeric enrichment in the roots of whole poplar plants. A comparison with mammalian biotransformation studies indicates a distinctively different metabolite profile of OH-PCB95 metabolites in whole poplar plants. Our observations suggest that biotransformation of chiral PCBs to OH-PCBs by plants may represent an important source of enantiomerically enriched OH-PCBs in the environment.

  10. Analyzing the impact of climate and management factors on the productivity and soil carbon sequestration of poplar plantations.

    PubMed

    Wang, Dan; Fan, Jiazhi; Jing, Panpan; Cheng, Yong; Ruan, Honghua

    2016-01-01

    It is crucial to investigate how climate and management factors impact poplar plantation production and soil carbon sequestration interactively. We extracted above-ground net primary production (ANPP), climate and management factors from peer-reviewed journal articles and analyzed impact of management factor and climate on the mean annual increment (MAI) of poplar ANPP statistically. Previously validated mechanistic model (ED) is used to perform case simulations for managed poplar plantations under different harvesting rotations. The meta-analysis indicate that the dry matter MAI was 6.3 Mg ha(-1) yr(-1) (n=641, sd=4.9) globally, and 5.1 (n=292, sd=4.0), 8.1 (n=224, sd=4.7) and 4.4 Mg ha(-1) yr(-1) (n=125, sd=3.2) in Europe, the US and China, respectively. Poplar MAI showed a significant response to GDD, precipitation and planting density and formed a quadratic relationship with stand age. The low annual production for poplar globally was probably caused by suboptimal water availability, rotation length and planting density. SEM attributes the variance of poplar growth rate more to climate than to management effects. Case simulations indicated that longer rotation cycle significantly increased soil carbon storage. Findings of this work suggests that management factor of rotation cycle alone could have dramatic impact on the above ground growth, as well as on the soil carbon sequestration of poplar plantations and will be helpful to quantify the long-term carbon sequestration through short rotation plantation. The findings of this study are useful in guiding further research, policy and management decisions towards sustainable poplar plantations. PMID:26531329

  11. Co-liquefaction of the Elbistan Lignite and Poplar Sawdust. Part I: The Effect of the Liquefaction Parameters

    SciTech Connect

    Karaca, H.; Acar, M.; Yilmaz, M.; Keklik, I.

    2009-07-01

    In this study, the liquefaction of Elbistan lignite and poplar sawdust, and the co-liquefaction of the Elbistan lignite and the poplar sawdust in an inert atmosphere and in non-catalytic conditions have been examined. Also, the effects of solvent/coal ratio and stirring speed on the total conversion derived as the result of the liquefaction process was attempted to be determined. Based on the results, although the effects of the solvent/coal ratio and the stirring speed on total conversion are similar for both the Elbistan lignite and the poplar sawdust, it was also noted that, under similar conditions, the conversion for the poplar sawdust was higher, as compared to the conversion of the Elbistan lignite. As the result of the liquefaction of Elbistan lignite and poplar sawdust under inert atmospheric conditions, the total conversion was increased partially, depending on both solvent/coal ratio and the speed of stirring. However, it was also noted that the total conversion did not change to a significant extent in high solvent/coal ratios and in stirring speed. As the result of the co-liquefaction of the Elbistan lignite and poplar sawdust under inert atmospheric conditions, total conversion was increased, based on the solvent/coal ratio. However, as in the case of the liquefaction of Elbistan lignite and poplar sawdust, it was noted that the high solvent/coal ratios (i.e., solvent/coal ratios of higher than 2/1) did not have a significant effect on the total conversion that was derived as the result of the co-liquefaction of the Elbistan lignite and poplar sawdust.

  12. Impact of 40 years poplar cultivation on soil carbon stocks and greenhouse gas fluxes

    NASA Astrophysics Data System (ADS)

    Ferré, C.; Leip, A.; Matteucci, G.; Previtali, F.; Seufert, G.

    2005-08-01

    Within the JRC Kyoto Experiment in the Regional Park and UN-Biosphere Reserve "Parco Ticino" (North-Italy, near Pavia), the soil carbon stocks and fluxes of CO2, N2O, and CH4 were measured in a poplar plantation in comparison with a natural mesohygrophilous deciduous forest nearby, which represents the pristine land cover of the area. Soil fluxes were measured using the static and dynamic closed chamber techniques for CH4 N2O, and CO2, respectively. We made further a pedological study to relate the spatial variability found with soil parameters.

    Annual emission fluxes of N2O and CO2 and deposition fluxes of CH4 were calculated for the year 2003 for the poplar plantation and compared to those measured at the natural forest site. N2O emissions at the poplar plantation were 0.15plusmn;0.1 g N2O m-2 y-1 and the difference to the emissions at the natural forest of 0.07±0.06 g N2O m-2 y-1 are partly due to a period of high emissions after the flooding of the site at the end of 2002. CH4 consumption at the natural forest was twice as large as at the poplar plantation. In comparison to the relict forest, carbon stocks in the soil under the poplar plantation were depleted by 61% of surface (10 cm) carbon and by 25% down the profile under tillage (45 cm). Soil respiration rates were not significant different at both sites with 1608±1053 and 2200±791 g CO2 m-2 y-1 at the poplar plantation and natural forest, respectively, indicating that soil organic carbon is much more stable in the natural forest. In terms of the greenhouse gas budget, the non-CO2 gases contributed minor to the overall soil balance with only 0.9% (N2O) and -0.3% (CH4 of CO2-eq emissions in the natural forest, and 2.7% (N2O) and -0.2% of CO2-eq. emissions in the poplar plantation.

    The very high spatial variability of soil fluxes within the two sites was related to the morphology of the floodplain area, which was formed by the historic course of

  13. Development of understory vegetation in pine and pine-hardwood shelterwood stands in the Ouachita mountains: The first 3 years. Forest Service research paper

    SciTech Connect

    Shelton, M.G.

    1997-09-01

    The shelterwood reproduction cutting method using two overstory compositions (a pine basal area of 30 square feet per acre with and without 15 square feet per acre of hardwoods) and two methods of submerchantable hardwood control (chain-saw felling with and without stump-applied herbicide) was tested in a 2x2 factorial, split-plot design with four randomized complete blocks. Total coverage of understory vegetation after 3 years was greater in the pine overstory treatment (68 percent) than in the pine-hardwood overstory treatment (46 percent) and was slightly greater for manual than chemical hardwood control (60 versus 55 percent). Results indicate that 15 square feet per acre of scattered hardwoods can be retained through at least 3 years after harvest, but additional monitoring will be needed to determine the long-term success of reproduction. Early results suggest that the herbicide treatment was not justified in the stand and site conditions tested in this study; contributing factors were the abundant pine seed production and low levels of competing vegetation.

  14. Developing a topographic model to predict the northern hardwood forest type within Carolina northern flying squirrel (Glaucomys sabrinus coloratus) recovery areas of the southern Appalachians

    USGS Publications Warehouse

    Evans, Andrew; Odom, Richard H.; Resler, Lynn M.; Ford, W. Mark; Prisley, Stephen

    2014-01-01

    The northern hardwood forest type is an important habitat component for the endangered Carolina northern flying squirrel (CNFS; Glaucomys sabrinus coloratus) for den sites and corridor habitats between boreo-montane conifer patches foraging areas. Our study related terrain data to presence of northern hardwood forest type in the recovery areas of CNFS in the southern Appalachian Mountains of western North Carolina, eastern Tennessee, and southwestern Virginia. We recorded overstory species composition and terrain variables at 338 points, to construct a robust, spatially predictive model. Terrain variables analyzed included elevation, aspect, slope gradient, site curvature, and topographic exposure. We used an information-theoretic approach to assess seven models based on associations noted in existing literature as well as an inclusive global model. Our results indicate that, on a regional scale, elevation, aspect, and topographic exposure index (TEI) are significant predictors of the presence of the northern hardwood forest type in the southern Appalachians. Our elevation + TEI model was the best approximating model (the lowest AICc score) for predicting northern hardwood forest type correctly classifying approximately 78% of our sample points. We then used these data to create region-wide predictive maps of the distribution of the northern hardwood forest type within CNFS recovery areas.

  15. Social Insects Dominate Eastern US Temperate Hardwood Forest Macroinvertebrate Communities in Warmer Regions

    PubMed Central

    King, Joshua R.; Warren, Robert J.; Bradford, Mark A.

    2013-01-01

    Earthworms, termites, and ants are common macroinvertebrates in terrestrial environments, although for most ecosystems data on their abundance and biomass is sparse. Quantifying their areal abundance is a critical first step in understanding their functional importance. We intensively sampled dead wood, litter, and soil in eastern US temperate hardwood forests at four sites, which span much of the latitudinal range of this ecosystem, to estimate the abundance and biomass m−2 of individuals in macroinvertebrate communities. Macroinvertebrates, other than ants and termites, differed only slightly among sites in total abundance and biomass and they were similar in ordinal composition. Termites and ants were the most abundant macroinvertebrates in dead wood, and ants were the most abundant in litter and soil. Ant abundance and biomass m−2 in the southernmost site (Florida) were among the highest values recorded for ants in any ecosystem. Ant and termite biomass and abundance varied greatly across the range, from <1% of the total macroinvertebrate abundance (in the northern sites) to >95% in the southern sites. Our data reveal a pronounced shift to eusocial insect dominance with decreasing latitude in a temperate ecosystem. The extraordinarily high social insect relative abundance outside of the tropics lends support to existing data suggesting that ants, along with termites, are globally the most abundant soil macroinvertebrates, and surpass the majority of other terrestrial animal (vertebrate and invertebrate) groups in biomass m−2. Our results provide a foundation for improving our understanding of the functional role of social insects in regulating ecosystem processes in temperate forest. PMID:24116079

  16. Hardwood biochar and manure co-application to a calcareous soil.

    PubMed

    Ippolito, J A; Stromberger, M E; Lentz, R D; Dungan, R S

    2016-01-01

    Biochar may affect the mineralization rate of labile organic C sources such as manures via microbial community shifts, and subsequently affect nutrient release. In order to ascertain the positive or negative priming effect of biochar on manure, dairy manure (2% by wt.) and a hardwood-based, fast pyrolysis biochar were applied (0%, 1%, 2%, and 10% by wt.) to a calcareous soil. Destructive sampling occurred at 1, 2, 3, 4, 6 and 12 months to monitor for changes in soil chemistry, water content, microbial respiration, bacterial populations, and microbial community structure. Overall results showed that increasing biochar application rate improved the soil water content, which may be beneficial in limited irrigation or rainfall areas. Biochar application increased soil organic C content and plant-available Fe and Mn, while a synergistic biochar-manure effect increased plant-available Zn. Compared to the other rates, the 10% biochar application lowered concentrations of NO3-N; effects appeared masked at lower biochar rates due to manure application. Over time, soil NO3-N increased likely due to manure N mineralization, yet soil NO3-N in the 10% biochar rate remained lower as compared to other treatments. In the presence of manure, only the 10% biochar application caused subtle microbial community structure shifts by increasing the relative amounts of two fatty acids associated with Gram-negative bacteria and decreasing Gram-positive bacterial fatty acids, each by ∼1%. Our previous findings with biochar alone suggested an overall negative priming effect with increasing biochar application rates, yet when co-applied with manure the negative priming effect was eliminated. PMID:26009473

  17. Modeling the Effects of Harvest Alternatives on Mitigating Oak Decline in a Central Hardwood Forest Landscape

    PubMed Central

    Wang, Wen J.; He, Hong S.; Spetich, Martin A.; Shifley, Stephen R.; Thompson III, Frank R.; Fraser, Jacob S.

    2013-01-01

    Oak decline is a process induced by complex interactions of predisposing factors, inciting factors, and contributing factors operating at tree, stand, and landscape scales. It has greatly altered species composition and stand structure in affected areas. Thinning, clearcutting, and group selection are widely adopted harvest alternatives for reducing forest vulnerability to oak decline by removing susceptible species and declining trees. However, the long-term, landscape-scale effects of these different harvest alternatives are not well studied because of the limited availability of experimental data. In this study, we applied a forest landscape model in combination with field studies to evaluate the effects of the three harvest alternatives on mitigating oak decline in a Central Hardwood Forest landscape. Results showed that the potential oak decline in high risk sites decreased strongly in the next five decades irrespective of harvest alternatives. This is because oak decline is a natural process and forest succession (e.g., high tree mortality resulting from intense competition) would eventually lead to the decrease in oak decline in this area. However, forest harvesting did play a role in mitigating oak decline and the effectiveness varied among the three harvest alternatives. The group selection and clearcutting alternatives were most effective in mitigating oak decline in the short and medium terms, respectively. The long-term effects of the three harvest alternatives on mitigating oak decline became less discernible as the role of succession increased. The thinning alternative had the highest biomass retention over time, followed by the group selection and clearcutting alternatives. The group selection alternative that balanced treatment effects and retaining biomass was the most viable alternative for managing oak decline. Insights from this study may be useful in developing effective and informed forest harvesting plans for managing oak decline. PMID

  18. Regional extent of an ecosystem engineer: earthworm invasion in northern hardwood forests.

    PubMed

    Holdsworth, Andrew R; Frelich, Lee E; Reich, Peter B

    2007-09-01

    The invasion of exotic earthworms into northern temperate and boreal forests previously devoid of earthworms is an important driver of ecosystem change. Earthworm invasion can cause significant changes in soil structure and communities, nutrient cycles, and the diversity and abundance of herbaceous plants. However, the regional extent and patterns of this invasion are poorly known. We conducted a regional survey in the Chippewa and Chequamegon National Forests, in Minnesota and Wisconsin, U.S.A., respectively, to measure the extent and patterns of earthworm invasion and their relationship to potential earthworm introduction sites. We sampled earthworms, soils, and vegetation in 20 mature, sugar maple-dominated forest stands in each national forest and analyzed the relationship between the presence of five earthworm taxonomic groups, habitat variables, and distance to the nearest potential introduction site. Earthworm invasion was extensive but incomplete in the two national forests. Four of the six earthworm taxonomic groups occurred in 55-95% of transects; however 20% of all transects were invaded by only one taxonomic group that has relatively minor ecological effects. Earthworm taxonomic groups exhibited a similar sequence of invasion found in other studies: Dendrobaena > Aporrectodea = Lumbricus juveniles > L. rubellus > L. terrestris. Distance to the nearest road was the best predictor of earthworm invasion in Wisconsin while distance to the nearest cabin was the best predictor in Minnesota. These data allow us to make preliminary assessments of landscape patterns of earthworm invasion. As an example, we estimate that 82% of upland mesic hardwood stands in the Wisconsin region are likely invaded by most taxonomic groups while only 3% are unlikely to be invaded at present. Distance to roads and cabins provides a coarse-scale predictor of earthworm invasion to focus stand-level assessments that will help forest managers better understand current and potential

  19. Mycorrhizal Response to Experimental pH and P Manipulation in Acidic Hardwood Forests

    PubMed Central

    Kluber, Laurel A.; Carrino-Kyker, Sarah R.; Coyle, Kaitlin P.; DeForest, Jared L.; Hewins, Charlotte R.; Shaw, Alanna N.; Smemo, Kurt A.; Burke, David J.

    2012-01-01

    Many temperate forests of the Northeastern United States and Europe have received significant anthropogenic acid and nitrogen (N) deposition over the last century. Although temperate hardwood forests are generally thought to be N-limited, anthropogenic deposition increases the possibility of phosphorus (P) limiting productivity in these forest ecosystems. Moreover, inorganic P availability is largely controlled by soil pH and biogeochemical theory suggests that forests with acidic soils (i.e.,

  20. Biocrude oils from the fast pyrolysis of poultry litter and hardwood.

    PubMed

    Agblevor, F A; Beis, S; Kim, S S; Tarrant, R; Mante, N O

    2010-02-01

    The safe and economical disposal of poultry litter is becoming a major problem for the USA poultry industry. Current disposal methods such as land application and feeding to cattle are now under pressure because of pollution of water resources due to leaching, runoffs and concern for mad cow disease contamination of the food chain. Incineration or combustion is potentially applicable to large scale operations, but for small scale growers and EPA non-attainment areas, this is not a suitable option because of the high cost of operation. Thus, there is a need for developing appropriate technologies to dispose poultry litter. Poultry litters from broiler chicken and turkey houses, as well as bedding material were converted into biocrude oil in a fast pyrolysis fluidized bed reactor. The biocrude oil yields were relatively low ranging from 36 wt% to 50 wt% depending on the age and bedding material content of the litter. The bedding material (which was mostly hardwood shavings) biocrude oil yield was 63 wt%. The higher heating value (HHV) of the poultry litter biocrude oils ranged from 26 MJ/kg to 29 MJ/kg while that of the bedding material was 24 MJ/kg. The oils had relatively high nitrogen content ranging from 4 wt% to 8 wt%, very low sulfur (<1 wt%) content and high viscosity. The viscosities of the oils appeared to be a function of both the source of litter and the pyrolysis temperature. The biochar yield ranged from 27 wt% to 40 wt% depending on the source, age and composition of the poultry litter. The biochar ash content ranged from 24 wt% to 54 wt% and was very rich in inorganic components such as potassium and phosphorous. PMID:19880302

  1. Biocrude oils from the fast pyrolysis of poultry litter and hardwood

    SciTech Connect

    Agblevor, F.A.; Beis, S.; Kim, S.S.; Tarrant, R.; Mante, N.O.

    2010-02-15

    The safe and economical disposal of poultry litter is becoming a major problem for the USA poultry industry. Current disposal methods such as land application and feeding to cattle are now under pressure because of pollution of water resources due to leaching, runoffs and concern for mad cow disease contamination of the food chain. Incineration or combustion is potentially applicable to large scale operations, but for small scale growers and EPA non-attainment areas, this is not a suitable option because of the high cost of operation. Thus, there is a need for developing appropriate technologies to dispose poultry litter. Poultry litters from broiler chicken and turkey houses, as well as bedding material were converted into biocrude oil in a fast pyrolysis fluidized bed reactor. The biocrude oil yields were relatively low ranging from 36 wt% to 50 wt% depending on the age and bedding material content of the litter. The bedding material (which was mostly hardwood shavings) biocrude oil yield was 63 wt%. The higher heating value (HHV) of the poultry litter biocrude oils ranged from 26 MJ/kg to 29 MJ/kg while that of the bedding material was 24 MJ/kg. The oils had relatively high nitrogen content ranging from 4 wt% to 8 wt%, very low sulfur (<1 wt%) content and high viscosity. The viscosities of the oils appeared to be a function of both the source of litter and the pyrolysis temperature. The biochar yield ranged from 27 wt% to 40 wt% depending on the source, age and composition of the poultry litter. The biochar ash content ranged from 24 wt% to 54 wt% and was very rich in inorganic components such as potassium and phosphorous.

  2. Hardwood biochar and manure co-application to a calcareous soil.

    PubMed

    Ippolito, J A; Stromberger, M E; Lentz, R D; Dungan, R S

    2016-01-01

    Biochar may affect the mineralization rate of labile organic C sources such as manures via microbial community shifts, and subsequently affect nutrient release. In order to ascertain the positive or negative priming effect of biochar on manure, dairy manure (2% by wt.) and a hardwood-based, fast pyrolysis biochar were applied (0%, 1%, 2%, and 10% by wt.) to a calcareous soil. Destructive sampling occurred at 1, 2, 3, 4, 6 and 12 months to monitor for changes in soil chemistry, water content, microbial respiration, bacterial populations, and microbial community structure. Overall results showed that increasing biochar application rate improved the soil water content, which may be beneficial in limited irrigation or rainfall areas. Biochar application increased soil organic C content and plant-available Fe and Mn, while a synergistic biochar-manure effect increased plant-available Zn. Compared to the other rates, the 10% biochar application lowered concentrations of NO3-N; effects appeared masked at lower biochar rates due to manure application. Over time, soil NO3-N increased likely due to manure N mineralization, yet soil NO3-N in the 10% biochar rate remained lower as compared to other treatments. In the presence of manure, only the 10% biochar application caused subtle microbial community structure shifts by increasing the relative amounts of two fatty acids associated with Gram-negative bacteria and decreasing Gram-positive bacterial fatty acids, each by ∼1%. Our previous findings with biochar alone suggested an overall negative priming effect with increasing biochar application rates, yet when co-applied with manure the negative priming effect was eliminated.

  3. Hubbard Brook Ecosystem Study: biogeochemistry of lead in the northern hardwood forest

    SciTech Connect

    Smith, W.; Siccama, T.G.

    1981-09-01

    The average annual Pb input to the northern hardwood forest at the Hubbard Brook Experimental Forest in central New Hampshire was 266 g ha/sup -1/ year /sup -1/ based on 4 years of records. Lead output via streamwater and eroded particulate matter was 5.0 and 1.1 g ha/sup -1/ year/sup -1/, respectively. Lead concentration in precipitation averaged 22 ..mu..g liter/sup -1/ and showed a significant decline over the 4 sample years (1975 to 1978). Lead input to the ecosystem via meteorological vectors is accumulated in the forest floor. Total current Pb content of the forest floor was 8.6 kg ha/sup -1/ and showed no significant differences along the elevation gradient of the watershed (400 to 800 m). Lead concentration in the forest floor was maximum on the ridge due to a minimum forest floor mass relative to the rest of the watershed. Within the forest floor, maximum Pb concentration is in the fermented (F) layer. Total Pb content of the forest biomass (stems greater than or equal to 10 cm dbh) was 1248 g ha/sup -1/. Lead concentration in the biota was in the following order: lichens (213 ..mu..g g/sup -1/) > mosses (190 ..mu..g g/sup -1/) tree twigs (26 ..mu..g g/sup -1/) > roots (20 ..mu..g g/sup -1/) > bark (19 ..mu..g g/sup -1/) > leaves (7 ..mu..g g/sup -1/) = bracket fungi (7 ..mu..g g/sup -1/) > wood (0.7 ..mu..g g/sup -1/). Disturbance of the forest ecosystem through harvest cutting, other than through increased runoff, increased erosion, and transport of particulate matter, does not alter the biogeochemistry of Pb and does not result in increased mobility and export of Pb due to gross or subtle alterations of the behavior of Pb in the ecosystem.

  4. Nitrogen biogeochemistry in the Adirondack Mountains of New York: hardwood ecosystems and associated surface waters.

    PubMed

    Mitchell, Myron J; Driscoll, Charles T; Inamdar, Shreeram; McGee, Greg G; Mbila, Monday O; Raynal, Dudley J

    2003-01-01

    Studies on the nitrogen (N) biogeochemistry in Adirondack northern hardwood ecosystems were summarized. Specific focus was placed on results at the Huntington Forest (HFS), Pancake-Hall Creek (PHC), Woods Lake (WL), Ampersand (AMO), Catlin Lake (CLO) and Hennessy Mountain (HM). Nitrogen deposition generally decreased from west to east in the Adirondacks, and there have been no marked temporal changes in N deposition from 1978 through 1998. Second-growth western sites (WL, PHC) had higher soil solution NO(3-) concentrations and fluxes than the HFS site in the central Adirondacks. Of the two old-growth sites (AMO and CLO), AMO had substantially higher NO(3-) concentrations due to the relative dominance of sugar maple that produced litter with high N mineralization and nitrification rates. The importance of vegetation in affecting N losses was also shown for N-fixing alders in wetlands. The Adirondack Manipulation and Modeling Project (AMMP) included separate experimental N additions of (NH4)2SO4 at WL, PHC and HFS and HNO3 at WL and HFS. Patterns of N loss varied with site and form of N addition and most of the N input was retained. For 16 lake/watersheds no consistent changes in NO(3-) concentrations were found from 1982 to 1997. Simulations suggested that marked NO(3-) loss will only be manifested over extended periods. Studies at the Arbutus Watershed provided information on the role of biogeochemical and hydrological factors in affecting the spatial and temporal patterns of NO(3-) concentrations. The heterogeneous topography in the Adirondacks has generated diverse landscape features and patterns of connectivity that are especially important in regulating the temporal and spatial patterns of NO(3-) concentrations in surface waters.

  5. Spatial and temporal patterns of beetles associated with coarse woody debris in managed bottomland hardwood forests.

    SciTech Connect

    Ulyshen, M., D.; Hanula, J., L.; Horn, S.; Kilgo, J., C.; Moorman, C., E.

    2004-05-13

    For. Ecol. and Mgt. 199:259-272. Malaise traps were used to sample beetles in artificial canopy gaps of different size (0.13 ha, 0.26 ha, and0.50 ha) and age in a South Carolina bottomland hardwood forest. Traps were placed at the center, edge, and in the surrounding forest of each gap. Young gaps (ý 1 year) had large amounts of coarse woody debris compared to the surrounding forest, while older gaps (ý 6 years) had virtually none. The total abundance and diversity of wood-dwelling beetles (Buprestidae, Cerambycidae, Brentidae, Bostrichidae, and Curculionidae (Scolytinae and Platypodinae)) was higher in the center of young gaps than in the center of old gaps. The abundance was higher in the center of young gaps than in the surrounding forest, while the forest surrounding old gaps and the edge of old gaps had a higher abundance and diversity of wood-dwelling beetles than did the center of old gaps. There was no difference in wood-dwelling beetle abundance between gaps of different size, but diversity was lower in 0.13 ha old gaps than in 0.26 ha or 0.50 ha old gaps. We suspect that gap size has more of an effect on woodborer abundance than indicated here because malaise traps sample a limited area. The predaceous beetle family Cleridae showed a very similar trend to that of the woodborers. Coarse woody debris is an important resource for many organisms, and our results lend further support to forest management practices that preserve coarse woody debris created during timber removal.

  6. Avian response to microclimate in canopy gaps in a bottomland hardwood forest.

    SciTech Connect

    Champlin, Tracey B.; Kilgo, John C.; Gumpertz, Marcia L.; Moorman, Christopher E.

    2009-04-01

    Abstract - Microclimate may infl uence use of early successional habitat by birds. We assessed the relationships between avian habitat use and microclimate (temperature, light intensity, and relative humidity) in experimentally created canopy gaps in a bottomland hardwood forest on the Savannah River Site, SC. Gaps were 2- to 3-year-old group-selection timber harvest openings of three sizes (0.13, 0.26, 0.50 ha). Our study was conducted from spring through fall, encompassing four bird-use periods (spring migration, breeding, post-breeding, and fall migration), in 2002 and 2003. We used mist netting and simultaneously recorded microclimate variables to determine the influence of microclimate on bird habitat use. Microclimate was strongly affected by net location within canopy gaps in both years. Temperature generally was higher on the west side of gaps, light intensity was greater in gap centers, and relative humidity was higher on the east side of gaps. However, we found few relationships between bird captures and the microclimate variables. Bird captures were inversely correlated with temperature during the breeding and postbreeding periods in 2002 and positively correlated with temperature during spring 2003. Captures were high where humidity was high during post-breeding 2002, and captures were low where humidity was high during spring 2003. We conclude that variations in the local microclimate had minor infl uence on avian habitat use within gaps. Instead, habitat selection in relatively mild regions like the southeastern US is based primarily on vegetation structure, while other factors, including microclimate, are less important.

  7. Bottomland hardwood establishment and avian colonization of reforested sites in the Mississippi Alluvial Valley

    USGS Publications Warehouse

    Wilson, R.R.; Twedt, D.J.; Fredrickson, L.H.; King, S.L.; Kaminski, R.M.

    2005-01-01

    Reforestation of bottomland hardwood sites in the Mississippi Alluvial Valley has markedly increased in recent years, primarily due to financial incentive programs such as the Wetland Reserve Program, Partners for Wildlife Program, and state and private conservation programs. An avian conservation plan for the Mississippi Alluvial Valley proposes returning a substantial area of cropland to forested wetlands. Understanding how birds colonize reforested sites is important to assess the effectiveness of avian conservation. We evaluated establishment of woody species and assessed bird colonization on 89 reforested sites. These reforested sites were primarily planted with heavy-seeded oaks (Quercus spp.) and pecans (Carya illinoensis). Natural invasion of light-seeded species was expected to diversify these forests for wildlife and sustainable timber harvest. Planted tree species averaged 397 + 36 stems/ha-1, whereas naturally invading trees averaged 1675 + 241 stems/ha. However, naturally invading trees were shorter than planted trees and most natural invasion occurred <100 m from an existing forested edge. Even so, planted trees were relatively slow to develop vertical structure, especially when compared with tree species planted and managed for pulpwood production. Slow development of vertical structure resulted in grassland bird species, particularly dickcissel (Spiza americana) and red-winged blackbird (Agelaius phoeniceus), being the dominant avian colonizers for the first 7 years post-planting. High priority bird species (as defined by Partners in Flight), such as prothonotary warbler (Protonotaria citrea) and wood thrush (Hylocichla mustelina), were not frequently detected until stands were 15 years old. Canonical correspondence analysis revealed tree height had the greatest influence on the bird communities colonizing reforested sites. Because colonization by forest birds is dependent on tree height, we recommend inclusion of at least one fast-growing tree

  8. Supplemental planting of early successional tree species during bottomland hardwood afforestation

    USGS Publications Warehouse

    Twedt, D.J.; Wilson, R.R.; Outcalt, Kenneth W.

    2002-01-01

    Reforestation of former bottom land hardwood forests that have been cleared for agriculture (i.e., afforestation) has historically emphasized planting heavy-seeded oaks (Quercus spp.) and pecans (Carya spp.). These species are slow to develop vertical forest structure. However, vertical forest structure is key to colonization of afforested sites by forest birds. Although early-successional tree species often enhance vertical structure, few of these species invade afforested sites that are distant from seed sources. Furthermore, many land mangers are reluctant to establish and maintain stands of fast-growing plantation trees. Therefore, on 40 afforested bottomland sites, we supplemented heavy-seeded seedlings with 8 patches of fast-growing trees: 4 patches of 12 eastern cottonwood (Populus deltoides) stem cuttings and 4 patches of 12 American sycamore (Platanus occidentalis) seedlings. To enhance survival and growth, tree patches were subjected to 4 weed control treatments: (1) physical weed barriers, (2) chemical herbicide, (3) both physical and chemical weed control, or (4) no weed control. Overall, first-year survival of cottonwood and sycamore was 25 percent and 47 percent, respectively. Second-year survival of extant trees was 52 percent for cottonwood and 77 percent for sycamore. Physical weed barriers increased survival of cottonwoods to 30 percent versus 18 percent survival with no weed control. Similarly, sycamore survival was increased from 49 percent without weed control to 64 percent with physical weed barriers. Chemical weed control adversely impacted sycamore and reduced survival to 35 percent. Tree heights did not differ between species or among weed control treatments. Girdling of trees by deer often destroyed saplings. Thus, little increase in vertical structure was detected between growing seasons. Application of fertilizer and protection via tree shelters did not improve survival or vertical development of sycamore or cottonwood.

  9. Climate change and the future of natural disturbances in the central hardwood region

    SciTech Connect

    Dale, Virginia H; Hughes, M. Joseph; Hayes, Daniel J

    2015-01-01

    The spatial patterns and ecological processes of the southeastern upland hardwood forests have evolved to reflect past climatic conditions and natural disturbance regimes. Changes in climate can lead to disturbances that exceed their natural range of variation, and the impacts of these changes will depend on the vulnerability or resiliency of these ecosystems. Global Circulation Models generally project annual increases in temperature across the southeastern United States over the coming decades, but changes in precipitation are less consistent. Even more unclear is how climate change might affect future trends in the severity and frequency of natural disturbances, such as severe storms, fires, droughts, floods, and insect outbreaks. Here, we use a time-series satellite data record to map the spatial pattern and severity of broad classes of natural disturbances the southeast region. The data derived from this map allow analysis of regional-scale trends in natural and anthropogenic disturbances in the region over the last three decades. Throughout the region, between 5% and 25% of forest land is affected by some sort of disturbance each year since 1985. The time series reveals periodic droughts that themselves are widespread and of low severity but are associated with more localized, high-severity disturbances such as fire and insect outbreaks. The map also reveals extensive anthropogenic disturbance across the region in the form of forest conversion related to resource extraction and urban and residential development. We discuss how changes in climate and disturbance regimes might affect southeastern forests in the future via altering the exposure, sensitivity and adaptive capacity of these ecosystems. Changes in climate are highly likely to expose southeastern forests to more frequent and severe disturbances, but ultimately how vulnerable or resilient southeastern forests are to these changes will depend on their sensitivity and capacity to adapt to these novel

  10. Mycorrhizal response to experimental pH and P manipulation in acidic hardwood forests.

    PubMed

    Kluber, Laurel A; Carrino-Kyker, Sarah R; Coyle, Kaitlin P; DeForest, Jared L; Hewins, Charlotte R; Shaw, Alanna N; Smemo, Kurt A; Burke, David J

    2012-01-01

    Many temperate forests of the Northeastern United States and Europe have received significant anthropogenic acid and nitrogen (N) deposition over the last century. Although temperate hardwood forests are generally thought to be N-limited, anthropogenic deposition increases the possibility of phosphorus (P) limiting productivity in these forest ecosystems. Moreover, inorganic P availability is largely controlled by soil pH and biogeochemical theory suggests that forests with acidic soils (i.e.,

  11. Forest liming increases forest floor carbon and nitrogen stocks in a mixed hardwood forest.

    PubMed

    Melvin, April M; Lichstein, Jeremy W; Goodale, Christine L

    2013-12-01

    In acid-impacted forests, decreased soil pH and calcium (Ca) availability have the potential to influence biotic and abiotic controls on carbon (C) and nitrogen (N) cycling. We investigated the effects of liming on above- and belowground C and N pools and fluxes 19 years after lime addition to the Woods Lake Watershed, Adirondack Park, New York, USA. Soil pH and exchangeable Ca remained elevated in the forest floor and upper mineral soil of limed areas. Forest floor C and N stocks were significantly larger in limed plots (68 vs. 31 Mg C/ha, and 3.0 vs. 1.5 Mg N/ha), resulting from a larger mass of Oa material. Liming reduced soil basal respiration rates by 17% and 43% in the Oe and Oa horizons, respectively. Net N mineralization was significantly lower in the limed soils for both forest floor horizons. Additional measurements of forest floor depth outside of our study plots, but within the treatment and control subcatchments also showed a deeper forest floor in limed areas; however, the mean depth of limed forest floor was 5 cm shallower than that observed in our study plots. Using a differential equation model of forest floor C dynamics, we found that liming effects on C fluxes measured within our study plots could explain the small observed increase in the Oe C stock but were not large enough to explain the increase in the Oa. Our catchment-wide assessment of forest floor depth, however, indicates that our plot analysis may be an overestimate of ecosystem-scale C and N stocks. Our results suggest that the mechanisms identified in our study, primarily liming-induced reduction in decomposition rates, may account for much of the observed increase in forest floor C. These findings emphasize the importance of understanding of the effects of liming in hardwood forests, and the long-term impacts of acid deposition on forest C and N uptake and retention.

  12. Canopy gap dynamics of second-growth red spruce-northern hardwood stands in West Virginia

    USGS Publications Warehouse

    Rentch, J.S.; Schuler, T.M.; Nowacki, G.J.; Beane, N.R.; Ford, W.M.

    2010-01-01

    Forest restoration requires an understanding of the natural disturbance regime of the target community and estimates of the historic range of variability of ecosystem components (composition, structure, and disturbance processes). Management prescriptions that support specific restoration activities should be consistent with these parameters. In this study, we describe gap-phase dynamics of even-aged, second-growth red spruce-northern hardwood stands in West Virginia that have been significantly degraded following early Twentieth Century harvesting and wildfire. In the current stage of stand development, gaps tended to be small, with mean canopy gap and extended canopy gap sizes of 53.4m2 and 199.3m2, respectively, and a canopy turnover rate of 1.4%year-1. The majority of gaps resulted from the death of one or two trees. American beech snags were the most frequent gap maker, partially due to the elevated presence of beech-bark disease in the study area. Gaps ranged in age from 1 to 28 years, had a mean of 13 years, and were unimodal in distribution. We projected red spruce to be the eventual gap filler in approximately 40% of the gaps. However, we estimated that most average-sized gaps will close within 15-20 years before red spruce canopy ascension is projected (30-60 years). Accordingly, many understory red spruce will require more than one overhead release - an observation verified by the tree-ring record and consistent with red spruce life history characteristics. Based on our observations, silvicultural prescriptions that include overhead release treatments such as thinning from above or small gap creation through selection harvesting could be an appropriate activity to foster red spruce restoration in the central Appalachians. ?? 2010 Elsevier B.V.

  13. Mycorrhizal response to experimental pH and P manipulation in acidic hardwood forests.

    PubMed

    Kluber, Laurel A; Carrino-Kyker, Sarah R; Coyle, Kaitlin P; DeForest, Jared L; Hewins, Charlotte R; Shaw, Alanna N; Smemo, Kurt A; Burke, David J

    2012-01-01

    Many temperate forests of the Northeastern United States and Europe have received significant anthropogenic acid and nitrogen (N) deposition over the last century. Although temperate hardwood forests are generally thought to be N-limited, anthropogenic deposition increases the possibility of phosphorus (P) limiting productivity in these forest ecosystems. Moreover, inorganic P availability is largely controlled by soil pH and biogeochemical theory suggests that forests with acidic soils (i.e.,

  14. Crossing the pedogenetic threshold: Apparent phosphorus limitation by soil microorganisms in unglaciated acidic eastern hardwood forests

    NASA Astrophysics Data System (ADS)

    Deforest, J. L.; Smemo, K. A.; Burke, D. J.

    2010-12-01

    The availability of soil phosphorus (P) can significantly influence microbial community composition and the ecosystem-level processes they mediate. However, the threshold at which soil microorganisms become functionally P-limited is unclear because of soil acidity effect on P availability. We reason that acidic temperate hardwood forest ecosystems are, in fact, functionally P-limited, but compensation occur via soil microbial production of phosphatase enzymes. We tested this hypothesis in glaciated and unglaciated mature mixed-mesophytic forests in eastern Ohio where both soil pH and P availability had been experientially manipulated. We measured the activity of two P acquiring soil enzymes, phosphomonoesterase (PMono) and phosphodiesterase (PDi), to understand how soil acidity and available P influence microbial function. Our experimental treatments elevated ambient soil pH from below 4.5 to around 5.5 and increased readily available phosphate from 3 to ~25 mg P/kg on glaciated soils and from 0.5 to ~5 mg P/kg on unglaciated soils. The P treatment decreased the activity of PDi by 82% relative to the control on unglaciated soils, but we observed no P treatment effect on glaciated soils. A similar result was observed for PMono. Soil pH, alone, did not significantly influence enzyme activities. Results suggest that soil microorganisms are more likely to be P-limited in older unglaciated soils. However, dramatically higher phosphatase activity in response to very low P availability suggests that an underlying ecosystem P limitation can be ameliorated by soil microbial community dynamics. This mechanism may be more important for older, unglaciated soils that have already crossed a pedogenic threshold where P availability influences ecosystem and microbial function.

  15. Windthrow and salvage logging in an old-growth hemlock-northern hardwoods forest

    USGS Publications Warehouse

    Lang, K.D.; Schulte, L.A.; Guntenspergen, G.R.

    2009-01-01

    Although the initial response to salvage (also known as, post-disturbance or sanitary) logging is known to vary among system components, little is known about longer term forest recovery. We examine forest overstory, understory, soil, and microtopographic response 25 years after a 1977 severe wind disturbance on the Flambeau River State Forest in Wisconsin, USA, a portion of which was salvage logged. Within this former old-growth hemlock-northern hardwoods forest, tree dominance has shifted from Eastern hemlock (Tsuga canadensis) to broad-leaf deciduous species (Ulmus americana, Acer saccharum, Tilia americana, Populus tremuloides, and Betula alleghaniensis) in both the salvaged and unsalvaged areas. While the biological legacies of pre-disturbance seedlings, saplings, and mature trees were initially more abundant in the unsalvaged area, regeneration through root suckers and stump sprouts was common in both areas. After 25 years, tree basal area, sapling density, shrub layer density, and seedling cover had converged between unsalvaged and salvaged areas. In contrast, understory herb communities differed between salvaged and unsalvaged forest, with salvaged forest containing significantly higher understory herb richness and cover, and greater dominance of species benefiting from disturbance, especially Solidago species. Soil bulk density, pH, organic carbon content, and organic nitrogen content were also significantly higher in the salvaged area. The structural legacy of tip-up microtopography remains more pronounced in the unsalvaged area, with significantly taller tip-up mounds and deeper pits. Mosses and some forest herbs, including Athyrium filix-femina and Hydrophyllum virginianum, showed strong positive responses to this tip-up microrelief, highlighting the importance of these structural legacies for understory biodiversity. In sum, although the pathways of recovery differed, this forest appeared to be as resilient to the compound disturbances of windthrow

  16. Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?

    PubMed Central

    Guarino, Francesco; Cicatelli, Angela; Brundu, Giuseppe; Heinze, Berthold; Castiglione, Stefano

    2015-01-01

    The widespread poplar populations of Sardinia are vegetatively propagated and live in different natural environments forming large monoclonal stands. The main goals of the present study were: i) to investigate/measure the epigenetic diversity of the poplar populations by determining their DNA methylation status; ii) to assess if and how methylation status influences population clustering; iii) to shed light on the changes that occur in the epigenome of ramets of the same poplar clone. To these purposes, 83 white poplar trees were sampled at different locations on the island of Sardinia. Methylation sensitive amplified polymorphism analysis was carried out on the genomic DNA extracted from leaves at the same juvenile stage. The study showed that the genetic biodiversity of poplars is quite limited but it is counterbalanced by epigenetic inter-population molecular variability. The comparison between MspI and HpaII DNA fragmentation profiles revealed that environmental conditions strongly influence hemi-methylation of the inner cytosine. The variable epigenetic status of Sardinian white poplars revealed a decreased number of population clusters. Landscape genetics analyses clearly demonstrated that ramets of the same clone were differentially methylated in relation to their geographic position. Therefore, our data support the notion that studies on plant biodiversity should no longer be restricted to genetic aspects, especially in the case of vegetatively propagated plant species. PMID:26147352

  17. Interaction between isoprene and ozone fluxes in a poplar plantation and its impact on air quality at the European level.

    PubMed

    Zenone, Terenzio; Hendriks, Carlijn; Brilli, Federico; Fransen, Erik; Gioli, Beniamio; Portillo-Estrada, Miguel; Schaap, Martijn; Ceulemans, Reinhart

    2016-09-12

    The emission of isoprene and other biogenic volatile organic compounds from vegetation plays an important role in tropospheric ozone (O3) formation. The potentially large expansion of isoprene emitting species (e.g., poplars) for bioenergy production might, therefore, impact tropospheric O3 formation. Using the eddy covariance technique we have simultaneously measured fluxes isoprene, O3 and of CO2 from a poplar (Populus) plantation grown for bioenergy production. We used the chemistry transport model LOTOS-EUROS to scale-up the isoprene emissions associated with the existing poplar plantations in Europe, and we assessed the impact of isoprene fluxes on ground level O3 concentrations. Our findings suggest that isoprene emissions from existing poplar-for-bioenergy plantations do not significantly affect the ground level of O3 concentration. Indeed the overall land in Europe covered with poplar plantations has not significantly changed over the last two decades despite policy incentives to produce bioenergy crops. The current surface area of isoprene emitting poplars-for-bioenergy remains too limited to significantly enhance O3 concentrations and thus to be considered a potential threat for air quality and human health.

  18. Interaction between isoprene and ozone fluxes in a poplar plantation and its impact on air quality at the European level.

    PubMed

    Zenone, Terenzio; Hendriks, Carlijn; Brilli, Federico; Fransen, Erik; Gioli, Beniamio; Portillo-Estrada, Miguel; Schaap, Martijn; Ceulemans, Reinhart

    2016-01-01

    The emission of isoprene and other biogenic volatile organic compounds from vegetation plays an important role in tropospheric ozone (O3) formation. The potentially large expansion of isoprene emitting species (e.g., poplars) for bioenergy production might, therefore, impact tropospheric O3 formation. Using the eddy covariance technique we have simultaneously measured fluxes isoprene, O3 and of CO2 from a poplar (Populus) plantation grown for bioenergy production. We used the chemistry transport model LOTOS-EUROS to scale-up the isoprene emissions associated with the existing poplar plantations in Europe, and we assessed the impact of isoprene fluxes on ground level O3 concentrations. Our findings suggest that isoprene emissions from existing poplar-for-bioenergy plantations do not significantly affect the ground level of O3 concentration. Indeed the overall land in Europe covered with poplar plantations has not significantly changed over the last two decades despite policy incentives to produce bioenergy crops. The current surface area of isoprene emitting poplars-for-bioenergy remains too limited to significantly enhance O3 concentrations and thus to be considered a potential threat for air quality and human health. PMID:27615148

  19. Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots

    PubMed Central

    Courty, P. E.; Labbé, J.; Kohler, A.; Marçais, B.; Bastien, C.; Churin, J. L.; Garbaye, J.; Le Tacon, F.

    2011-01-01

    The impact of ectomycorrhiza formation on the secretion of exoenzymes by the host plant and the symbiont is unknown. Thirty-eight F1 individuals from an interspecific Populus deltoides (Bartr.)×Populus trichocarpa (Torr. & A. Gray) controlled cross were inoculated with the ectomycorrhizal fungus Laccaria bicolor. The colonization of poplar roots by L. bicolor dramatically modified their ability to secrete enzymes involved in organic matter breakdown or organic phosphorus mobilization, such as N-acetylglucosaminidase, β-glucuronidase, cellobiohydrolase, β-glucosidase, β-xylosidase, laccase, and acid phosphatase. The expression of genes coding for laccase, N-acetylglucosaminidase, and acid phosphatase was studied in mycorrhizal and non-mycorrhizal root tips. Depending on the genes, their expression was regulated upon symbiosis development. Moreover, it appears that poplar laccases or phosphatases contribute poorly to ectomycorrhiza metabolic activity. Enzymes secreted by poplar roots were added to or substituted by enzymes secreted by L. bicolor. The enzymatic activities expressed in mycorrhizal roots differed significantly between the two parents, while it did not differ in non-mycorrhizal roots. Significant differences were found between poplar genotypes for all enzymatic activities measured on ectomycorrhizas except for laccases activity. In contrast, no significant differences were found between poplar genotypes for enzymatic activities of non-mycorrhizal root tips except for acid phosphatase activity. The level of enzymes secreted by the ectomycorrhizal root tips is under the genetic control of the host. Moreover, poplar heterosis was expressed through the enzymatic activities of the fungal partner. PMID:20881013

  20. Interaction between isoprene and ozone fluxes in a poplar plantation and its impact on air quality at the European level

    PubMed Central

    Zenone, Terenzio; Hendriks, Carlijn; Brilli, Federico; Fransen, Erik; Gioli, Beniamio; Portillo-Estrada, Miguel; Schaap, Martijn; Ceulemans, Reinhart

    2016-01-01

    The emission of isoprene and other biogenic volatile organic compounds from vegetation plays an important role in tropospheric ozone (O3) formation. The potentially large expansion of isoprene emitting species (e.g., poplars) for bioenergy production might, therefore, impact tropospheric O3 formation. Using the eddy covariance technique we have simultaneously measured fluxes isoprene, O3 and of CO2 from a poplar (Populus) plantation grown for bioenergy production. We used the chemistry transport model LOTOS-EUROS to scale-up the isoprene emissions associated with the existing poplar plantations in Europe, and we assessed the impact of isoprene fluxes on ground level O3 concentrations. Our findings suggest that isoprene emissions from existing poplar-for-bioenergy plantations do not significantly affect the ground level of O3 concentration. Indeed the overall land in Europe covered with poplar plantations has not significantly changed over the last two decades despite policy incentives to produce bioenergy crops. The current surface area of isoprene emitting poplars-for-bioenergy remains too limited to significantly enhance O3 concentrations and thus to be considered a potential threat for air quality and human health. PMID:27615148

  1. Strontium isotope detection of brine contamination in the East Poplar oil field, Montana

    USGS Publications Warehouse

    Peterman, Zell E.; Thamke, Joanna N.; Futa, Kiyoto; Oliver, Thomas A.

    2010-01-01

    Brine contamination of groundwater in the East Poplar oil field was first documented in the mid-1980s by the U.S. Geological Survey by using hydrochemistry, with an emphasis on chloride (Cl) and total dissolved solids concentrations. Supply wells for the City of Poplar are located downgradient from the oil field, are completed in the same shallow aquifers that are documented as contaminated, and therefore are potentially at risk of being contaminated. In cooperation with the Office of Environmental Protection of the Fort Peck Tribes, groundwater samples were collected in 2009 and 2010 from supply wells, monitor wells, and the Poplar River for analyses of major and trace elements, including strontium (Sr) concentrations and isotopic compositions. The ratio of strontium-87 to strontium-86 (87Sr/86Sr) is used extensively as a natural tracer in groundwater to detect mixing among waters from different sources and to study the effects of water/rock interaction. On a plot of the reciprocal strontium concentration against the 87Sr/86Sr ratio, mixtures of two end members will produce a linear array. Using this plotting method, data for samples from most of the wells, including the City of Poplar wells, define an array with reciprocal strontium values ranging from 0.08 to 4.15 and 87Sr/86Sr ratios ranging from 0.70811 to 0.70828. This array is composed of a brine end member with an average 87Sr/86Sr of 0.70822, strontium concentrations in excess of 12.5 milligrams per liter (mg/L), and chloride concentrations exceeding 8,000 mg/L mixing with uncontaminated water similar to that in USGS06-08 with 18.0 mg/L chloride, 0.24 mg/L strontium, and a 87Sr/86Sr ratio of 0.70811. The position of samples from the City of Poplar public-water supply wells within this array indicates that brine contamination has reached all three wells. Outliers from this array are EPU-4G (groundwater from the Cretaceous Judith River Formation), brine samples from disposal wells (Huber 5-D and EPU 1-D

  2. Biological Monitoring Program for East Fork Poplar Creek

    SciTech Connect

    Adams, S.M.; Christensen, S.W.; Greeley, M.S.jr; Hill, W.R.; Kszos, L.A.; McCarthy, J.F.; Peterson, M.J.; Ryon, M.G.; Smith, J.G.; Southworth, G.R.; Stewart, A.J.

    1998-10-15

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biologicai Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the compiex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC, These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumuiation studies, and (4) ecological surveys of the periphyton, benthic macro invertebrate, and fish communities. Monitoring is currently being conducted at five sites, although sites maybe excluded and/or others added depending upon the specific objectives of the various tasks. Criteria used in selecting the sites include: (1) location of sampling sites used in other studies, (2) known or suspected sources of downstream impacts, (3) proximity to U.S. Department of Energy (DOE) Oak Ridge Reservation (ORR) boundaries, (4) concentration of mercury in the adjacent floodplain, (5) appropriate habitat distribution, and (6

  3. Establishing even-aged pine and pine-hardwood mixtures in the Ouachita mountains using the shelterwood method

    SciTech Connect

    Shelton, M.G.; Baker, J.B.

    1992-01-01

    The study was established in 1989 as a joint effort among the Ouachita National Forest, the Southern Forest Experiment Station, and the University of Arkansas at Monticello. The goals of the study are: (1) to determine the levels at which pine and hardwoods are compatible in the shelterwood regeneration method by evaluating the amount, spatial distribution and development of regeneration and measuring the growth and yield of the retained seedtrees, (2) determine the damage to regeneration caused by the eventual seedtree harvest, and (3) to evaluate the wildlife habitat, water quality, and aesthetics of shelterwood stands so that comparisons can be made with uneven-aged stands.

  4. Differential response by hardwood and deciduous stands in New England forests to climate change and insect-induced mortality

    NASA Astrophysics Data System (ADS)

    Munger, J. William; Wofsy, Steven C.; Orwig, David A.; Williams, Chris

    2016-04-01

    Forests in the northeastern United States include large areas dominated by mosaics of oak/maple and hemlock stands. Often the hardwood dominated stands include a significant cohort of hemlock saplings. However, long-term survival of hemlock in this region is threatened by Hemlock Wooly Adelgid (HWA), an invasive insect that is fatal to eastern hemlock. The northern limit of HWA is affected in part by winter minimum temperature and warmer winters are enabling northward expansion of HWA infestation. At the Harvard Forest in central Massachusetts, two long-term eddy flux towers are measuring carbon exchange in a >100 year old hardwood stand since 1992 (EMS- Ha1) and in a 100-200 year old hemlock stand (Ha2) since 2004. The flux measurements are complemented by vegetation dynamics plots. Carbon exchange at the two sites has distinctly different seasonality. The hardwood site has a shorter carbon uptake period, but higher peak fluxes, while the hemlock stand has a long carbon uptake period extending from spring thaw until early winter freeze. Some contribution from the evergreen hemlock in the understory is evident before canopy greenup at the EMS tower and spring and fall carbon uptake rates have been increasing and contribute in part to a trend towards larger annual carbon uptake at this site. Carbon uptake by hemlock increases with warmer temperatures in the spring and fall transition. Adelgids have reached the hemlock stand near Ha2 and have been widely distributed in the canopy since spring of 2012. The hemlock canopy in that stand is thinning and net carbon uptake and evapotranspiration have been decreasing since 2012. Adelgids have also been observed in scattered stands near the Ha1 tower, but as of 2015 the trees are still healthy. Because hemlocks stands have different seasonality and provide a distinct soil and sub-canopy light environment, their mortality and replacement by hardwood species will have significant impacts on forest dynamics, carbon balance, and

  5. Long-term effects of a lock and dam and greentree reservoir management on a bottomland hardwood forest

    USGS Publications Warehouse

    King, S.L.; Allen, J.A.; McCoy, J.W.

    1998-01-01

    We investigated the long-term effects of a lock and dam and greentree reservoir management on a riparian bottomland hardwood forest in southern Arkansas, USA, by monitoring stress, mortality, and regeneration of bottomland hardwood trees in 53 permanent sampling plots from 1987-1995. The lock and dam and greentree reservoir management have altered the timing, depth, and duration of flooding within the wetland forest. Evaluation of daily river stage data indicates that November overbank flooding (i.e. 0.3 m above normal pool) of 1 week duration occurred only 10 times from 1950 to 1995 and four of these occurrences were the result of artificial flooding of the greentree reservoir. Results of the vegetation study indicate that the five most common dominant and co-dominant species were overcup oak, water hickory, Nuttall oak, willow oak, and sweetgum. Mortality of willow oak exceeded that of all other species except Nuttall oak. Nuttall oak, willow oak, and water hickory had much higher percentages of dead trees concentrated within the dominant and co-dominant crown classes. Probit analysis indicated that differences in stress and mortality were due to a combination of flooding and stand competition. Overcup oak appears to exhibit very little stress regardless of crown class and elevation and, with few exceptions, had a significantly greater probability of occurring within lower stress classes than any other species. Only 22 new stems were recruited into the 5 cm diameter-at-breast height size class between 1990-1995 and of these, three were Nuttall oak, three were water hickory, and one was sweetgum. No recruitment into the 5 cm diameter-at-breast height size class occurred for overcup oak or willow oak. The results of the study suggest that the forest is progressing to a more water-tolerant community dominated by overcup oak. A conservative flooding strategy would minimize tree stress and maintain quality wildlife habitat within the forested wetland.The long

  6. Short Rotation Woody Crops Program. Quarterly progress report, March 1-May 31, 1985. [Sycamore, alders, black locust, larch, poplars, saltbush

    SciTech Connect

    Wright, L.L.; Perlack, R.D.; Wenzel, C.R.; Trimble, J.L.; Ranney, J.W.

    1985-08-01

    This report covers the progress of the Short Rotation Woody Crops Program (SRWCP) during the third quarter of fiscal year 1985. This report summarizes ORNL management activities, technical activities at ORNL and subcontract institutions, and the technology transfer that is occurring as a result of subcontractor and ORNL activities. Third-year results of a nutrient utilization study confirmed that there were no benefits to quarterly fertilization with urea nitrogen. Testing of one prototype short-rotation intensive culture harvester was conducted on a sycamore plantation on Scott Paper Company land in southern Alabama. Coppice yields of European black alder reported by Iowa State University indicate potential productivity of about 7.2 dry Mg . ha/sup -1/ . year/sup -1/ if the best trees are selected. Coppice yields were more than double first-rotation yields. About 31,000 black locust and larch trees were established in 12 genetic tests at 4 sites in Michigan. Seedling rotation productivity rates of 4-year-old hybrid poplar, based on harvest data, were reported by Pennsylvania State University. Rates varied from 4.8 dry Mg . ha/sup -1/ . year/sup -1/ to 10.7 dry Mg . ha/sup -1/ . year/sup -1/, depending on site, management strategy, and planting year. An efficient method for in vitro micropropagation of elite genotypes of fourwing saltbush was developed by Plant Resources Institute. A new study to evaluate yield/density relationships was established by the USDA Forest Service, Pacific Northwest Forest and Range Experiment Station. Dissertation research on the crown geometry of plantation-grown American sycamore was completed.

  7. Reversible swelling of the cell wall of poplar biomass by ionic liquid at room temperature

    PubMed Central

    Lucas, Marcel; Wagner, Greg L.; Nishiyama, Yoshiharu; Hanson, Leif; Samayam, Indira P.; Schall, Constance A.; Langan, Paul; Rector, Kirk D.

    2012-01-01

    Time-resolved autofluorescence, Raman microspectroscopy, and scanning microprobe X-ray diffraction were combined in order to characterize lignocellulosic biomass from poplar trees and how it changes during treatment with the ionic liquid 1-n-ethyl-3-methylimidazolium acetate (EMIMAC) at room temperature. The EMIMAC penetrates the cell wall from the lumen, swelling the cell wall by about a factor of two towards the empty lumen. However, the middle lamella remains unchanged, preventing the cell wall from swelling outwards. During this swelling, most of the cellulose microfibrils are solubi-lized but chain migration is restricted and a small percentage of microfibrils persist. When the EMIMAC is expelled, the cellulose recrystallizes as microfibrils of cellulose I. There is little change in the relative chemical composition of the cell wall after treatment. The action of EMIMAC on the poplar cell wall at room temperature would therefore appear to be a reversible swelling and a reversible decrystallization of the cell wall. PMID:21247757

  8. Cometabolic degradation of trichloroethylene by Burkholderia cepacia G4 with poplar leaf homogenate.

    PubMed

    Kang, Jun Won; Doty, Sharon Lafferty

    2014-07-01

    Trichloroethylene (TCE), a chlorinated organic solvent, is one of the most common and widespread groundwater contaminants worldwide. Among the group of TCE-degrading aerobic bacteria, Burkholderia cepacia G4 is the best-known representative. This strain requires the addition of specific substrates, including toluene, phenol, and benzene, to induce the enzymes to degrade TCE. However, the substrates are toxic and introducing them into the soil can result in secondary contamination. In this study, poplar leaf homogenate containing natural phenolic compounds was tested for the ability to induce the growth of and TCE degradation by B. cepacia G4. The results showed that the G4 strain could grow and degrade TCE well with the addition of phytochemicals. The poplar leaf homogenate also functioned as an inducer of the toluene-ortho-monooxygenase (TOM) gene in B. cepacia G4.

  9. Feasibility study of transportation management strategies in the Poplar Corridor, Memphis, Tennessee

    SciTech Connect

    Siniard, D.

    1990-02-01

    This report documents the development and implementation of various transportation management strategies aimed at alleviating traffic congestion problems in the Poplar Corridor, a major transportation corridor located in a rapidly growing suburban area of Memphis, Tennessee. The project provided the opportunity for local governments to work with the private sector in a joint venture to address traffic congestion problems and to promote more efficient use of the area's transportation network. The project was carried out by the staff of Memphis Area Rideshare, a joint city/county agency which provides transit information and free carpool/vanpool computer matching services to area commuters. Public sector participants in the planning process included transportation and land use planners from the Office of Planning and Development, city traffic engineers, and representatives from the Memphis Area Transit Authority (MATA). Private sector input came from major developers and employers in the Poplar Corridor and from officials of schools located in the area.

  10. Partial acid hydrolysis of poplar wood as a pretreatment for enzymatic hydrolysis

    SciTech Connect

    Knappert, D.; Grethlein, H.; Converse, A.

    1981-01-01

    Partial acid hydrolysis was studied as a pretreatment to enhance glucose yields from enzymatic hydrolysis of poplar. The pretreatments were carried out in a continuous flow reactor at temperatures ranging from 162 to 222/sup 0/C, acid concentrations ranging from 0 to 1.5%, and treatment times from 3.6 to 12.7 s. The pretreated slurries were hydrolyzed with Trichoderma reesei C30 cellulase at 50/sup 0/C and a pH of 4.8 for 48 h. Increased yields of glucose were achieved when poplar was pretreated at temperatures higher than 180/sup 0/C. By increasing the cellobiase activity of the cellulase with the addition of NOVO cellobiase, in some cases 100% of the potential glucose content of the substrate was converted to glucose after only 24 h of enzymatic hydrolysis.

  11. Dynamics of the volatile defense of winter "dormant" balsam poplar (Populus balsamifera).

    PubMed

    Clausen, Thomas P; Chen, Janice; Bryant, John P; Provenza, Frederick D; Villalba, Juan

    2010-05-01

    6-Hydroxycylohex-2-en-1-one (6-HCH) has been reported as a major chemical defense of the winter-dormant internodes of balsam poplar (Populus balsamifera) against feeding by herbivores such as the snowshoe hare (Lepus americanus). We report that the concentration of 6-HCH in the fall internodes is triggered by a single hard frost, and then undergoes an exponential decline through volatilization over the winter that results in barely detectable quantities by early spring. We conclude that the role of 6-HCH in the defense of mature balsam poplar is more complex than simply acting as a toxin. Rather, 6-HCH's role as a defensive agent must evolve over the course of the winter from being a co-toxin to a cue for a conditioned flavor aversion (CFA) to finally having no role by late spring.

  12. Effects of cutting orientation in poplar wood biomass size reduction on enzymatic hydrolysis sugar yield.

    PubMed

    Zhang, Meng; Ju, Xiaohui; Song, Xiaoxu; Zhang, Xiao; Pei, Z J; Wang, Donghai

    2015-10-01

    The aim of this study was to understand how cutting orientation in poplar wood biomass size reduction affects enzymatic hydrolysis sugar yield of wood particles. A metal cutting (milling) machine was used to produce poplar wood particles from three cutting orientations. Results showed that cutting orientation significantly affected enzymatic hydrolysis sugar yield of wood particles. In this study, size reduction from the optimum cutting orientation produced 50% more sugars than the other two cutting orientations. Particles from the cutting orientation with the highest sugar yield had a large enzyme accessible area (125 mg orange dye/g biomass, as evaluated by Simons' stain procedure) and low crystallinity (50% crystallinity index, as calculated by the Segal method). Furthermore, small particle size did not necessarily lead to improvement in enzymatic digestibility.

  13. Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus).

    PubMed

    Geraldes, A; Hefer, C A; Capron, A; Kolosova, N; Martinez-Nuñez, F; Soolanayakanahally, R Y; Stanton, B; Guy, R D; Mansfield, S D; Douglas, C J; Cronk, Q C B

    2015-07-01

    All species of the genus Populus (poplar, aspen) are dioecious, suggesting an ancient origin of this trait. Despite some empirical counter examples, theory suggests that nonrecombining sex-linked regions should quickly spread, eventually becoming heteromorphic chromosomes. In contrast, we show using whole-genome scans that the sex-associated region in Populus trichocarpa is small and much younger than the age of the genus. This indicates that sex determination is highly labile in poplar, consistent with recent evidence of 'turnover' of sex-determination regions in animals. We performed whole-genome resequencing of 52 P. trichocarpa (black cottonwood) and 34 Populus balsamifera (balsam poplar) individuals of known sex. Genomewide association studies in these unstructured populations identified 650 SNPs significantly associated with sex. We estimate the size of the sex-linked region to be ~100 kbp. All SNPs significantly associated with sex were in strong linkage disequilibrium despite the fact that they were mapped to six different chromosomes (plus 3 unmapped scaffolds) in version 2.2 of the reference genome. We show that this is likely due to genome misassembly. The segregation pattern of sex-associated SNPs revealed this to be an XY sex-determining system. Estimated divergence times of X and Y haplotype sequences (6-7 Ma) are much more recent than the divergence of P. trichocarpa (poplar) and Populus tremuloides (aspen). Consistent with this, in P. tremuloides, we found no XY haplotype divergence within the P. trichocarpa sex-determining region. These two species therefore have a different genomic architecture of sex, suggestive of at least one turnover event in the recent past.

  14. Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.

    PubMed

    Pinosio, Sara; Giacomello, Stefania; Faivre-Rampant, Patricia; Taylor, Gail; Jorge, Veronique; Le Paslier, Marie Christine; Zaina, Giusi; Bastien, Catherine; Cattonaro, Federica; Marroni, Fabio; Morgante, Michele

    2016-10-01

    Many recent studies have emphasized the important role of structural variation (SV) in determining human genetic and phenotypic variation. In plants, studies aimed at elucidating the extent of SV are still in their infancy. Evidence has indicated a high presence and an active role of SV in driving plant genome evolution in different plant species.With the aim of characterizing the size and the composition of the poplar pan-genome, we performed a genome-wide analysis of structural variation in three intercrossable poplar species: Populus nigra, Populus deltoides, and Populus trichocarpa We detected a total of 7,889 deletions and 10,586 insertions relative to the P. trichocarpa reference genome, covering respectively 33.2 Mb and 62.9 Mb of genomic sequence, and 3,230 genes affected by copy number variation (CNV). The majority of the detected variants are inter-specific in agreement with a recent origin following separation of species.Insertions and deletions (INDELs) were preferentially located in low-gene density regions of the poplar genome and were, for the majority, associated with the activity of transposable elements. Genes affected by SV showed lower-than-average expression levels and higher levels of dN/dS, suggesting that they are subject to relaxed selective pressure or correspond to pseudogenes.Functional annotation of genes affected by INDELs showed over-representation of categories associated with transposable elements activity, while genes affected by genic CNVs showed enrichment in categories related to resistance to stress and pathogens. This study provides a genome-wide catalogue of SV and the first insight on functional and structural properties of the poplar pan-genome. PMID:27499133

  15. Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation

    PubMed Central

    Pinosio, Sara; Giacomello, Stefania; Faivre-Rampant, Patricia; Taylor, Gail; Jorge, Veronique; Le Paslier, Marie Christine; Zaina, Giusi; Bastien, Catherine; Cattonaro, Federica; Marroni, Fabio; Morgante, Michele

    2016-01-01

    Many recent studies have emphasized the important role of structural variation (SV) in determining human genetic and phenotypic variation. In plants, studies aimed at elucidating the extent of SV are still in their infancy. Evidence has indicated a high presence and an active role of SV in driving plant genome evolution in different plant species. With the aim of characterizing the size and the composition of the poplar pan-genome, we performed a genome-wide analysis of structural variation in three intercrossable poplar species: Populus nigra, Populus deltoides, and Populus trichocarpa. We detected a total of 7,889 deletions and 10,586 insertions relative to the P. trichocarpa reference genome, covering respectively 33.2 Mb and 62.9 Mb of genomic sequence, and 3,230 genes affected by copy number variation (CNV). The majority of the detected variants are inter-specific in agreement with a recent origin following separation of species. Insertions and deletions (INDELs) were preferentially located in low-gene density regions of the poplar genome and were, for the majority, associated with the activity of transposable elements. Genes affected by SV showed lower-than-average expression levels and higher levels of dN/dS, suggesting that they are subject to relaxed selective pressure or correspond to pseudogenes. Functional annotation of genes affected by INDELs showed over-representation of categories associated with transposable elements activity, while genes affected by genic CNVs showed enrichment in categories related to resistance to stress and pathogens. This study provides a genome-wide catalogue of SV and the first insight on functional and structural properties of the poplar pan-genome. PMID:27499133

  16. Influence of moisture content on the velocity of ultrasounds in black poplar wood

    NASA Technical Reports Server (NTRS)

    Bucar, V.; Facacaru, I.

    1974-01-01

    Correlations among the longitudinal, radial and tangential velocities of ultrasounds in black poplar on the one hand and among these magnitudes and the wood's moisture content on the other hand are presented. Mathematical equations approximating these correlations are given, and the influence of moisture content on the elastic constants of wood is discussed. The possibility of using ultrasonic methods in automating the wood drying process and in testing the quality and homogeneity of wood is pointed out.

  17. Searching for hot spots and hot moments of soil denitrification in northern hardwood forests

    NASA Astrophysics Data System (ADS)

    Morse, J. L.; Duran, J.; Morillas, L.; Roales, J.; Bailey, S. W.; McGuire, K. J.; Groffman, P. M.

    2014-12-01

    Denitrification is a key biogeochemical process that affects nitrogen (N) availability, N losses to aquatic systems, and atmospheric chemistry. In upland forests, denitrification has not been thought to be a major N pathway because it is an anaerobic microbial process that requires nitrate, labile carbon (C), and low oxygen (O2) conditions, which do not occur broadly or consistently throughout forest soils. However, there may be enough spatial and temporal heterogeneity at fine scales to support denitrification rates that are relevant at the landscape scale. To quantify the importance of spatial and temporal variability in soil denitrification in northern hardwood forests at the Hubbard Brook Experimental Forest (HBEF; New Hampshire, USA), we developed two related projects: 1) we sought to identify hot spots of biogeochemical activity, including soil denitrification potential, based on hydropedologic settings and flowpaths in a catchment during the growing season; and 2) we investigated the influence of simulated rainfall events on soil O2 and nitrous oxide concentrations, denitrification rates, and soil respiration during different seasons at HBEF. In the first study, we expected to find that sites dominated by soils with thick Bh horizons (zones of C accumulation) would have the highest denitrification rates. However, despite the variation among soil profiles found in different hydropedologic settings, we did not find significant differences in denitrification potential. Rather, when areal coverage and horizon thickness for the contrasting hydropedologic settings were accounted for, catchment-scale estimates of denitrification potential were about 1/3 higher than conventionally calculated estimates. In the second study, soil O2 in surface horizons only decreased following additions of labile C. Responses of soil respiration and denitrification to simulated rainfall were also influenced by season. While these studies highlight the complex heterogeneity in forest

  18. Fluxes of Oxidized and Reduced Iron Through a Northern Hardwood Forest Spodosol

    NASA Astrophysics Data System (ADS)

    Fuss, C. B.; Driscoll, C. T.

    2008-12-01

    Iron (Fe) is abundant among trace elements in forest ecosystems and is important in the development and function of soils. In this study we use measurements from the Hubbard Brook Experimental Forest in the White Mountains of New Hampshire, USA. To better understand the biogeochemical behavior of Fe and its role in the development of Spodosol soils (podsolization), we have constructed a series of mass balance equations to determine fluxes of reduced (ferrous, Fe(II)) and oxidized (ferric, Fe(III)) iron draining through the soil profile. Additionally, we measured Fe in throughfall and leaf litterfall as well as stream water to better assess inputs to and output from the soil. Soil solution fluxes of Fe were highest from the organic (Oa) horizon and decreased with depth in the mineral (Bh and Bs) horizons, consistent with podsolization theories predicting immobilization of Fe in mineral soil. The fluxes of Fe(II), Fe(III), and dissolved organic carbon (DOC) show similar patterns to each other, also consistent with hypotheses of organically-complexed Fe translocated to the spodic horizon, where co-precipitation of Fe and C occur. The portion of total Fe as Fe(II) ranges approximately 10-60% in soil solutions, seemingly high for soils that are typically considered well- drained, oxidizing environments. Analysis of total Fe and Fe(II) in leaf litter extracts from the three most abundant hardwood species show leachate to be a major source of reduced Fe to solutions draining the forest floor as approximately 50% of this Fe is Fe(II). The dissolved Fe draining the forest floor is either complexed by organic compounds during litter decomposition or is in leached directly from leaves in a complexed form. Our results indicate these organic complexes stabilize Fe(II) in solution when oxidizing conditions should promote considerably higher Fe(III)-to-Fe(II) ratios. Qualitative measurements of dissolved oxygen concentration in the soil solution range from nearly depleted to

  19. Sample size and allocation of effort in point count sampling of birds in bottomland hardwood forests

    USGS Publications Warehouse

    Smith, W.P.; Twedt, D.J.; Cooper, R.J.; Wiedenfeld, D.A.; Hamel, P.B.; Ford, R.P.; Ralph, C. John; Sauer, John R.; Droege, Sam

    1995-01-01

    To examine sample size requirements and optimum allocation of effort in point count sampling of bottomland hardwood forests, we computed minimum sample sizes from variation recorded during 82 point counts (May 7-May 16, 1992) from three localities containing three habitat types across three regions of the Mississippi Alluvial Valley (MAV). Also, we estimated the effect of increasing the number of points or visits by comparing results of 150 four-minute point counts obtained from each of four stands on Delta Experimental Forest (DEF) during May 8-May 21, 1991 and May 30-June 12, 1992. For each stand, we obtained bootstrap estimates of mean cumulative number of species each year from all possible combinations of six points and six visits. ANOVA was used to model cumulative species as a function of number of points visited, number of visits to each point, and interaction of points and visits. There was significant variation in numbers of birds and species between regions and localities (nested within region); neither habitat, nor the interaction between region and habitat, was significant. For a = 0.05 and a = 0.10, minimum sample size estimates (per factor level) varied by orders of magnitude depending upon the observed or specified range of desired detectable difference. For observed regional variation, 20 and 40 point counts were required to accommodate variability in total individuals (MSE = 9.28) and species (MSE = 3.79), respectively, whereas ? 25 percent of the mean could be achieved with five counts per factor level. Sample size sufficient to detect actual differences of Wood Thrush (Hylocichla mustelina) was >200, whereas the Prothonotary Warbler (Protonotaria citrea) required <10 counts. Differences in mean cumulative species were detected among number of points visited and among number of visits to a point. In the lower MAV, mean cumulative species increased with each added point through five points and with each additional visit through four visits

  20. Patterns of litter disappearance in a northern hardwood forest invaded by exotic earthworms.

    PubMed

    Suárez, Esteban R; Fahey, Timothy J; Yavitt, Joseph B; Groffman, Peter M; Bohlen, Patrick J

    2006-02-01

    A field study was conducted to evaluate the effects of exotic earthworm invasions on the rates of leaf litter disappearance in a northern hardwood forest in southcentral New York, USA. Specifically, we assessed whether differences in litter quality and the species composition of exotic earthworm communities affected leaf litter disappearance rates. Two forest sites with contrasting communities of exotic earthworms were selected, and disappearance rates of sugar maple and red oak litter were estimated in litter boxes in adjacent earthworm-free, transition, and earthworm-invaded plots within each site. After 540 days in the field, 1.7-3 times more litter remained in the reference plots than in the earthworm-invaded plots. In the earthworm-invaded plots, rates of disappearance of sugar maple litter were higher than for oak litter during the first year, but by the end of the experiment, the amount of sugar maple and oak litter remaining in the earthworm-invaded plots was identical within each site. The composition of the earthworm communities significantly affected the patterns of litter disappearance. In the site dominated by the anecic earthworm Lumbricus terrestris and the endogeic Aporrectodea tuberculata, the percentage of litter remaining after 540 days (approximately 17%) was significantly less than at the site dominated by L. rubellus and Octolasion tyrtaeum (approximately 27%). This difference may be attributed to the differences in feeding behavior of the two litter-feeding species: L. terrestris buries entire leaves in vertical burrows, whereas L. rubellus usually feeds on litter at the soil surface, leaving behind leaf petioles and veins. Our results showed that earthworms not only accelerate litter disappearance rates, but also may reduce the differences in decomposition rates that result from different litter qualities at later stages of decay. Similarly, our results indicate that earthworm effects on decomposition vary with earthworm community

  1. Foraging behavior of pileated woodpeckers in partial cut and uncut bottomland hardwood forest

    USGS Publications Warehouse

    Newell, P.; King, S.; Kaller, M.

    2009-01-01

    In bottomland hardwood forests, partial cutting techniques are increasingly advocated and used to create habitat for priority wildlife like Louisiana black bear (Ursus americanus luteolus), white-tailed deer (Odocoileus virginianus), and Neotropical migrants. Although partial cutting may be beneficial to some species, those that use dead wood may be negatively affected since large diameter and poor quality trees (deformed, moribund, or dead) are rare, but normally targeted for removal. On the other hand, partial cutting can create dead wood if logging slash is left on-site. We studied foraging behavior of pileated woodpeckers (Dryocopus pileatus) in one- and two-year-old partial cuts designed to benefit priority species and in uncut forest during winter, spring, and summer of 2006 and 2007 in Louisiana. Males and females did not differ in their use of tree species, dbh class, decay class, foraging height, use of foraging tactics or substrate types; however, males foraged on larger substrates than females. In both partial cut and uncut forest, standing live trees were most frequently used (83% compared to 14% for standing dead trees and 3% for coarse woody debris); however, dead trees were selected (i.e. used out of proportion to availability). Overcup oak (Quercus lyrata) and bitter pecan (Carya aquatica) were also selected and sugarberry (Celtis laevigata) avoided. Pileated woodpeckers selected trees ???50 cm dbh and avoided trees in smaller dbh classes (10-20 cm). Density of selected foraging substrates was the same in partial cut and uncut forest. Of the foraging substrates, woodpeckers spent 54% of foraging time on live branches and boles, 37% on dead branches and boles, and 9% on vines. Of the foraging tactics, the highest proportion of foraging time was spent excavating (58%), followed by pecking (14%), gleaning (14%), scaling (7%), berry-eating (4%), and probing (3%). Woodpecker use of foraging tactics and substrates, and foraging height and substrate

  2. Foraging behavior of pileated woodpeckers in partial cut and uncut bottomland hardwood forest

    USGS Publications Warehouse

    Newell, P.; King, Sammy L.; Kaller, Michael D.

    2009-01-01

    In bottomland hardwood forests, partial cutting techniques are increasingly advocated and used to create habitat for priority wildlife like Louisiana black bear (Ursus americanus luteolus), white-tailed deer (Odocoileus virginianus), and Neotropical migrants. Although partial cutting may be beneficial to some species, those that use dead wood may be negatively affected since large diameter and poor quality trees (deformed, moribund, or dead) are rare, but normally targeted for removal. On the other hand, partial cutting can create dead wood if logging slash is left on-site. We studied foraging behavior of pileated woodpeckers (Dryocopus pileatus) in one- and two-year-old partial cuts designed to benefit priority species and in uncut forest during winter, spring, and summer of 2006 and 2007 in Louisiana. Males and females did not differ in their use of tree species, dbh class, decay class, foraging height, use of foraging tactics or substrate types; however, males foraged on larger substrates than females. In both partial cut and uncut forest, standing live trees were most frequently used (83% compared to 14% for standing dead trees and 3% for coarse woody debris); however, dead trees were selected (i.e. used out of proportion to availability). Overcup oak (Quercus lyrata) and bitter pecan (Carya aquatica) were also selected and sugarberry (Celtis laevigata) avoided. Pileated woodpeckers selected trees >= 50 cm dbh and avoided trees in smaller dbh classes (10-20 cm). Density of selected foraging substrates was the same in partial cut and uncut forest. Of the foraging substrates, woodpeckers spent 54% of foraging time on live branches and boles, 37% on dead branches and boles, and 9% on vines. Of the foraging tactics, the highest proportion of foraging time was spent excavating (58%), followed by pecking (14%), gleaning (14%), scaling (7%), berry-eating (4%), and probing (3%). Woodpecker use of foraging tactics and substrates, and foraging height and substrate

  3. Patterns of litter disappearance in a northern hardwood forest invaded by exotic earthworms.

    PubMed

    Suárez, Esteban R; Fahey, Timothy J; Yavitt, Joseph B; Groffman, Peter M; Bohlen, Patrick J

    2006-02-01

    A field study was conducted to evaluate the effects of exotic earthworm invasions on the rates of leaf litter disappearance in a northern hardwood forest in southcentral New York, USA. Specifically, we assessed whether differences in litter quality and the species composition of exotic earthworm communities affected leaf litter disappearance rates. Two forest sites with contrasting communities of exotic earthworms were selected, and disappearance rates of sugar maple and red oak litter were estimated in litter boxes in adjacent earthworm-free, transition, and earthworm-invaded plots within each site. After 540 days in the field, 1.7-3 times more litter remained in the reference plots than in the earthworm-invaded plots. In the earthworm-invaded plots, rates of disappearance of sugar maple litter were higher than for oak litter during the first year, but by the end of the experiment, the amount of sugar maple and oak litter remaining in the earthworm-invaded plots was identical within each site. The composition of the earthworm communities significantly affected the patterns of litter disappearance. In the site dominated by the anecic earthworm Lumbricus terrestris and the endogeic Aporrectodea tuberculata, the percentage of litter remaining after 540 days (approximately 17%) was significantly less than at the site dominated by L. rubellus and Octolasion tyrtaeum (approximately 27%). This difference may be attributed to the differences in feeding behavior of the two litter-feeding species: L. terrestris buries entire leaves in vertical burrows, whereas L. rubellus usually feeds on litter at the soil surface, leaving behind leaf petioles and veins. Our results showed that earthworms not only accelerate litter disappearance rates, but also may reduce the differences in decomposition rates that result from different litter qualities at later stages of decay. Similarly, our results indicate that earthworm effects on decomposition vary with earthworm community

  4. Nitrogen immobilization by wood-chip application: Protecting water quality in a northern hardwood forest

    USGS Publications Warehouse

    Homyak, P.M.; Yanai, R.D.; Burns, Douglas A.; Briggs, R.D.; Germain, R.H.

    2008-01-01

    Forest harvesting disrupts the nitrogen cycle, which may affect stream water quality by increasing nitrate concentrations, reducing pH and acid neutralizing capacity, and mobilizing aluminum and base cations. We tested the application of wood chips derived from logging slash to increase immobilization of N after harvesting, which should reduce nitrate flux to streams. In August 2004, a stand of northern hardwoods was patch-clearcut in the Catskill Mountains, NY, and four replicates of three treatments were implemented in five 0.2-ha cut patches. Wood chips were applied to the soil surface at a rate equivalent to the amount of slash smaller than eight inches in diameter (1?? treatment). A second treatment doubled that rate (2??), and a third treatment received no chips (0??). Additionally, three uncut reference plots were established in nearby forested areas. Ion exchange resin bags and soil KCl-extractions were used to monitor nitrate availability in the upper 5-10 cm of soil approximately every seven weeks, except in winter. Resin bags indicated that the wood chips retained 30% or 42% of the nitrate pulse, while for KCl extracts, the retention rate was 78% or 100% of the difference between 0?? and uncut plots. During the fall following harvest, wood-chip treated plots had resin bag soil nitrate concentrations about 25% of those in 0?? plots (p = 0.0001). In the first growing season after the cut, nitrate concentrations in wood-chip treated plots for KCl extracts were 13% of those in 0?? treatments (p = 0.03) in May and about half those in 0?? treatments (p = 0.01) in July for resin bags. During spring snowmelt, however, nitrate concentrations were high and indistinguishable among treatments, including the uncut reference plots for resin bags and below detection limit for KCl extracts. Wood chips incubated in litterbags had an initial C:N of 125:1, which then decreased to 70:1 after one year of field incubation. These changes in C:N values indicate that the wood

  5. Assessing the use of poplar tree systems as a landfill evapotranspiration barrier with the SHAW model.

    PubMed

    Preston, G M; McBride, R A

    2004-08-01

    The use of poplar tree systems (PTS) as evapotranspiration barriers on decommissioned landfills is gaining attention as an option for leachate management. This study involved field-testing the Simultaneous Heat and Water (SHAW) model for its ability to reliably estimate poplar transpiration, volumetric soil water content, and soil temperature at a landfill located in southern Ontario, Canada. The model was then used to estimate deep drainage and to ascertain the influence of a young PTS on the soil water balance of the landfill cover. The SHAW model tended to underestimate poplar transpiration [mean difference (MD) ranged from 0.33 to 3.55 mm on a daily total basis] and overestimate volumetric soil water content by up to 0.10 m3 m(-3). The model estimated soil temperature very well, particularly in the upper 1 m of the landfill cover (MD ranged from -0.1 to 1.6 x degrees C in this layer). The SHAW model simulations showed that deep drainage decreased appreciably with the presence of a young PTS largely through increased interception of rainfall, and that PTS have a good potential to act as effective evapotranspiration barriers in northern temperate climate zones. PMID:15462337

  6. Water stress induces changes in polyphenol profile and antioxidant capacity in poplar plants (Populus spp.).

    PubMed

    Popović, B M; Štajner, D; Ždero-Pavlović, R; Tumbas-Šaponjac, V; Čanadanović-Brunet, J; Orlović, S

    2016-08-01

    This paper is aimed to characterize young poplar plants under the influence of water stress provoked by polyethileneglycol 6000 (PEG 6000). Three polar genotypes (M1, B229, and PE19/66) were grown in hydroponics and subjected to 100 and 200 mOsm PEG 6000 during six days. Polyphenol characterization, two enzymatic markers and antioxidant capacity in leaves and roots were investigated in stressed plants. Total phenol content, ferric reducing antioxidant capacity (FRAP) and DPPH antiradical power (DPPH ARP) were determined for estimating total antioxidant capacity. Polyphenol oxidase (PPO) and phenylalanine ammonia lyase (PAL) were determined as enzymatic markers. Polyphenol characterization of poplar samples was performed by HPLC-PDA analysis. All results were subjected to correlation analysis and principal component analysis (PCA). Inspite of the decrease of total phenol content in investigated genotypes, as well as total antioxidant capacity, some of polyphenols were affected by stress like flavonoids chrysin, myricetine, kaempferol and isoferulic acid in roots of B229 genotype (Populus deltoides). Genotype B229 also showed the increase of antioxidant capacity and PAL activity in root and leaves under stress what could be the indicator of the adaptability of poplar plants to water stress. Significant positive correlations were obtained between PAL, antioxidant capacity as well as phenolic acids among themselves. Chemometric evaluation showed close interdependence between flavonoids, FRAP, DPPH antiradical power and both investigated enzymes of polyphenol metabolism, PAL and PPO.

  7. Investigating Mass Transport Limitations on Xylan Hydrolysis During Dilute Acid Pretreatment of Poplar

    SciTech Connect

    Mittal, Ashutosh; Pilath, Heid M.; Parent, Yves; Chatterjee, Siddharth G.; Donohoe, Bryon S.; Yarbrough, John M.; Himmel, Michael E.; Nimlos, Mark R.; Johnson, David K.

    2014-04-28

    Mass transport limitations could be an impediment to achieving high sugar yields during biomass pretreatment and thus be a critical factor in the economics of biofuels production. The objective of this work was to study the mass transfer restrictions imposed by the structure of biomass on the hydrolysis of xylan during dilute acid pretreatment of biomass. Mass transfer effects were studied by pretreating poplar wood at particle sizes ranging from 10 micrometers to 10 mm. This work showed a significant reduction in the rate of xylan hydrolysis in poplar when compared to the intrinsic rate of hydrolysis for isolated xylan that is possible in the absence of mass transfer. In poplar samples we observed no significant difference in the rates of xylan hydrolysis over more than two orders of magnitude in particle size. It appears that no additional mass transport restrictions are introduced by increasing particle size from 10 micrometers to 10 mm. This work suggests that the rates of xylan hydrolysis in biomass particles are limited primarily by the diffusion of hydrolysis products out of plant cell walls. A mathematical description is presented to describe the kinetics of xylan hydrolysis that includes transport of the hydrolysis products through biomass into the bulk solution. The modeling results show that the effective diffusion coefficient of the hydrolysis products in the cell wall is several orders of magnitude smaller than typical values in other applications signifying the role of plant cell walls in offering resistance to diffusion of the hydrolysis products.

  8. Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK.

    PubMed

    Aylott, Matthew J; Casella, E; Tubby, I; Street, N R; Smith, P; Taylor, Gail

    2008-01-01

    Limited information on likely supply and spatial yield of bioenergy crops exists for the UK. Here, productivities are reported of poplar (Populus spp.) and willow (Salix spp.) grown as short-rotation coppice (SRC), using data from a large 49-site yield trial network. A partial least-squares regression technique was used to upscale actual field trial observations across England and Wales. Spatial productivity was then assessed under different land-use scenarios. Mean modelled yields ranged between 4.9 and 10.7 oven-dry tonnes (odt) ha(-1) yr(-1). Yields were generally higher in willow than in poplar, reflecting the susceptibility of older poplar genotypes to rust and their tendency for single stem dominance. Replacing 10% of arable land, 20% of improved grassland and 100% of set-aside grassland in England and Wales with the three most productive genotypes would yield 13 Modt of biomass annually (supplying 7% of UK electricity production or 48% of UK combined heat and power (CHP) production). Results show existing SRC genotypes have the immediate potential to be an important component of a mixed portfolio of renewables and that, in future, as new and improved genotypes become available, higher yields could extend this potential further.

  9. Short rotation coppice culture of willows and poplars as energy crops on metal contaminated agricultural soils.

    PubMed

    Ruttens, Ann; Boulet, Jana; Weyens, Nele; Smeets, Karen; Adriaensen, Kristin; Meers, Erik; Van Slycken, Stijn; Tack, Filip; Meiresonne, Linda; Thewys, Theo; Witters, Nele; Carleer, Robert; Dupae, Joke; Vangronsveld, Jaco

    2011-01-01

    Phytoremediation, more precisely phytoextraction, has been placed forward as an environmental friendly remediation technique, that can gradually reduce increased soil metal concentrations, in particular the bioavailable fractions. The aim of this study was to investigate the possibilities of growing willows and poplars under short rotation coppice (SRC) on an acid, poor, sandy metal contaminated soil, to combine in this way soil remediation by phytoextraction on one hand, and production of biomass for energy purposes on the other. Above ground biomass productivities were low for poplars to moderate for willows, which was not surprising, taking into account the soil conditions that are not very favorable for growth of these trees. Calculated phytoextraction efficiency was much longer for poplars than these for willows. We calculated that for phytoextraction in this particular case it would take at least 36 years to reach the legal threshold values for cadmium, but in combination with production of feedstock for bioenergy processes, this type of land use can offer an alternative income for local farmers. Based on the data of the first growing cycle, for this particular case, SRC of willows should be recommended.

  10. Overexpression of poplar cellulase accelerates growth and disturbs the closing movements of leaves in sengon.

    PubMed

    Hartati, Sri; Sudarmonowati, Enny; Park, Yong Woo; Kaku, Tomomi; Kaida, Rumi; Baba, Kei'ichi; Hayashi, Takahisa

    2008-06-01

    In this study, poplar (Populus alba) cellulase (PaPopCel1) was overexpressed in a tropical Leguminosae tree, sengon (Paraserianthes falcataria), by the Agrobacterium tumefaciens method. PaPopCel1 overexpression increased the length and width of stems with larger leaves, which showed a moderately higher density of green color than leaves of the wild type. The pairs of leaves on the transgenic plants closed more slowly during sunset than those on the wild-type plants. When main veins from each genotype were excised and placed on a paper towel, however, the leaves of the transgenic plants closed more rapidly than those of the wild-type plant. Based on carbohydrate analyses of cell walls, the leaves of the transgenic plants contained less wall-bound xyloglucan than those of the wild-type plants. In situ xyloglucan endotransglucosylase activity showed that the incorporation of whole xyloglucan, potentially for wall tightening, occurred in the parenchyma cells (motor cells) of the petiolule pulvinus attached to the main vein, although the transgenic plant incorporated less whole xyloglucan than the wild-type plant. These observations support the hypothesis that the paracrystalline sites of cellulose microfibrils are attacked by poplar cellulase, which loosens xyloglucan intercalation, resulting in an irreversible wall modification. This process could be the reason why the overexpression of poplar cellulase both promotes plant growth and disturbs the biological clock of the plant by altering the closing movements of the leaves of the plant. PMID:18417637

  11. Effector-Mining in the Poplar Rust Fungus Melampsora larici-populina Secretome

    PubMed Central

    Lorrain, Cécile; Hecker, Arnaud; Duplessis, Sébastien

    2015-01-01

    The poplar leaf rust fungus, Melampsora larici-populina has been established as a tree-microbe interaction model. Understanding the molecular mechanisms controlling infection by pathogens appears essential for durable management of tree plantations. In biotrophic plant-parasites, effectors are known to condition host cell colonization. Thus, investigation of candidate secreted effector proteins (CSEPs) is a major goal in the poplar–poplar rust interaction. Unlike oomycetes, fungal effectors do not share conserved motifs and candidate prediction relies on a set of a priori criteria established from reported bona fide effectors. Secretome prediction, genome-wide analysis of gene families and transcriptomics of M. larici-populina have led to catalogs of more than a thousand secreted proteins. Automatized effector-mining pipelines hold great promise for rapid and systematic identification and prioritization of CSEPs for functional characterization. In this review, we report on and discuss the current status of the poplar rust fungus secretome and prediction of candidate effectors from this species. PMID:26697026

  12. Water stress induces changes in polyphenol profile and antioxidant capacity in poplar plants (Populus spp.).

    PubMed

    Popović, B M; Štajner, D; Ždero-Pavlović, R; Tumbas-Šaponjac, V; Čanadanović-Brunet, J; Orlović, S

    2016-08-01

    This paper is aimed to characterize young poplar plants under the influence of water stress provoked by polyethileneglycol 6000 (PEG 6000). Three polar genotypes (M1, B229, and PE19/66) were grown in hydroponics and subjected to 100 and 200 mOsm PEG 6000 during six days. Polyphenol characterization, two enzymatic markers and antioxidant capacity in leaves and roots were investigated in stressed plants. Total phenol content, ferric reducing antioxidant capacity (FRAP) and DPPH antiradical power (DPPH ARP) were determined for estimating total antioxidant capacity. Polyphenol oxidase (PPO) and phenylalanine ammonia lyase (PAL) were determined as enzymatic markers. Polyphenol characterization of poplar samples was performed by HPLC-PDA analysis. All results were subjected to correlation analysis and principal component analysis (PCA). Inspite of the decrease of total phenol content in investigated genotypes, as well as total antioxidant capacity, some of polyphenols were affected by stress like flavonoids chrysin, myricetine, kaempferol and isoferulic acid in roots of B229 genotype (Populus deltoides). Genotype B229 also showed the increase of antioxidant capacity and PAL activity in root and leaves under stress what could be the indicator of the adaptability of poplar plants to water stress. Significant positive correlations were obtained between PAL, antioxidant capacity as well as phenolic acids among themselves. Chemometric evaluation showed close interdependence between flavonoids, FRAP, DPPH antiradical power and both investigated enzymes of polyphenol metabolism, PAL and PPO. PMID:27116372

  13. Investigation of horizontal gene transfer in poplar/Amanita muscaria ectomycorrhizas.

    PubMed

    Zhang, Chi; Hampp, Rüdiger; Nehls, Uwe

    2005-01-01

    Fine roots of forest trees form together with certain soil fungi symbiotic structures (ectomycorrhizas), where fungal hyphae are in intimate contact with plant cells. Due to root cell degeneration, plant DNA is released and could be taken up by the fungus. The possibility that horizontal gene transfer might result in a risk for the environment should be evaluated before a massive release of genetically engineered trees into nature occurs, even though only a few convincing examples of horizontal gene transfer are known. Transgenic poplars containing a construct of the Streptomyces hygroscopicus bar gene under the control of the Cochliobolus heterostrophus GPD (glyceraldehyde-3-phosphate dehydrogenase) promoter were generated by Agrobacterium-mediated transformation. The functionality of this construct in the ectomycorrhizal model fungus Amanita muscaria was previously verified by protoplast-based fungal transformation. 35,000 ectomycorrhizas, formed between transgenic poplars and non-transgenic A. muscaria hyphae, were isolated and transferred to selective agar plates. Putative herbicide-resistant fungal colonies were obtained after the first round of selection. However, none of these colonies survived a transfer onto fresh selection medium, nor did they contain the bar gene, indicating that no horizontal gene transfer from poplar to A. muscaria occurred during symbiosis under axenic conditions. However, since ectomycorrhizas are associated under natural conditions with viruses, bacteria and other fungi, these additional associations should be evaluated in future. PMID:16827551

  14. Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

    PubMed Central

    Bálint, Miklós; Tiffin, Peter; Hallström, Björn; O’Hara, Robert B.; Olson, Matthew S.; Fankhauser, Johnathon D.; Piepenbring, Meike; Schmitt, Imke

    2013-01-01

    Foliar fungal communities of plants are diverse and ubiquitous. In grasses endophytes may increase host fitness; in trees, their ecological roles are poorly understood. We investigated whether the genotype of the host tree influences community structure of foliar fungi. We sampled leaves from genotyped balsam poplars from across the species' range, and applied 454 amplicon sequencing to characterize foliar fungal communities. At the time of the sampling the poplars had been growing in a common garden for two years. We found diverse fungal communities associated with the poplar leaves. Linear discriminant analysis and generalized linear models showed that host genotypes had a structuring effect on the composition of foliar fungal communities. The observed patterns may be explained by a filtering mechanism which allows the trees to selectively recruit fungal strains from the environment. Alternatively, host genotype-specific fungal communities may be present in the tree systemically, and persist in the host even after two clonal reproductions. Both scenarios are consistent with host tree adaptation to specific foliar fungal communities and suggest that there is a functional basis for the strong biotic interaction. PMID:23326555

  15. Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera).

    PubMed

    Bálint, Miklós; Tiffin, Peter; Hallström, Björn; O'Hara, Robert B; Olson, Matthew S; Fankhauser, Johnathon D; Piepenbring, Meike; Schmitt, Imke

    2013-01-01

    Foliar fungal communities of plants are diverse and ubiquitous. In grasses endophytes may increase host fitness; in trees, their ecological roles are poorly understood. We investigated whether the genotype of the host tree influences community structure of foliar fungi. We sampled leaves from genotyped balsam poplars from across the species' range, and applied 454 amplicon sequencing to characterize foliar fungal communities. At the time of the sampling the poplars had been growing in a common garden for two years. We found diverse fungal communities associated with the poplar leaves. Linear discriminant analysis and generalized linear models showed that host genotypes had a structuring effect on the composition of foliar fungal communities. The observed patterns may be explained by a filtering mechanism which allows the trees to selectively recruit fungal strains from the environment. Alternatively, host genotype-specific fungal communities may be present in the tree systemically, and persist in the host even after two clonal reproductions. Both scenarios are consistent with host tree adaptation to specific foliar fungal communities and suggest that there is a functional basis for the strong biotic interaction.

  16. [Effect of flooding stress on transpiration of poplar I-69/55].

    PubMed

    Gao, J; Hou, C; Wu, Z

    2000-08-01

    The rates of transpiration(Tr) and photosynthesis(Pn) of poplar I-69/55 trees were measured under flooding stress. Flooding stress caused Pn and Tr decreasing, while in the period of measurement, Pn almost didn't change. The longer the period of flooding stress was, the more the Tr and stomatal conductance (Gs) decreased. Undre no stress, Pn and Tr of test trees displayed daily double-peak curves and seasonal variations, with the maximum in summer. Water use efficiency also displayed seasonal variation, with the maximum in autumn. Under no stress, Tr obviously changed with tree ages, with the order of 1 year-old > 3 year-old > 7 year-old. The rate of Tr/Pn in spring, summer and autumn was higher than that of other deciduous broad-leaved trees in the same region, especially in summer. The high Tr/Pn ratio means a high water consumption, which is beneficial to water loss of poplar I-69/55. In shoal sites, the temperature of leaf surface in summer and autumn is the most important factor that affects the transpiration rate of poplar I-69/55, suggesting that decreasing the temperature of leaf suface is beneficial to increase the transpiration rate. During the two days after flooding, the temperature of leaf surface is still the important factor that affects transpiration rate.

  17. Transport and fate of dieldrin in poplar and willow trees analyzed by SPME.

    PubMed

    Skaates, Serena V; Ramaswami, Anu; Anderson, Larry G

    2005-09-01

    Dieldrin is a hydrophobic organochlorine insecticide that is persistent in the environment. The fate and transport of dieldrin in trees is important both in the context of potential remediation, as well as food chain impacts through dieldrin transport to shoots and leaves. Experiments were conducted to measure the degree of dieldrin partitioning to plant tissue and the potential for biodegradation of dieldrin in the microbe rich tree rhizosphere. Dieldrin was analyzed in water and plant tissue using headspace solid-phase microextraction (SPME) coupled with gas chromatography. Poplar and willow saplings planted in soil and watered with 10 microgl(-1) dieldrin for up to 9 months showed no adverse effects due to dieldrin exposure and no dieldrin was observed in plant shoots with a method detection limit (MDL) of 7 ngg(-1). One-week hydroponic tests of poplar saplings exposed to aqueous dieldrin also showed no detection of dieldrin in shoots, with an average of 66% of the dieldrin partitioned to the plant roots and an overall mass balance recovery of 76% in the plant-water system. The root concentration factor (RCF) was found to be 30+/-3 ml water g(-1) root. Biodegradation of dieldrin was not observed in an aqueous batch bioreactor containing 8 microgl(-1) dieldrin, nutrients and bacteria from the root zone of a poplar sapling that had been exposed to dieldrin for 9 months. These results show that planting trees is likely to be safe and potentially useful at sites containing low-levels of dieldrin in groundwater.

  18. Consequences of landscape patterns on the genetic composition of remnant hardwood stands in the Southeast: A pilot study.

    SciTech Connect

    Godt, Mary Jo, W.; Hamrick, J., L.

    2003-01-01

    Report of a pilot study intended to generate genetic data for a tree species in fragmented hardwood stands. It was anticipated that this data would permit assessment of the feasibility of long-term genetic research for which external funding support could be generated. A second objective was to initiate studies that addressed fundamental questions of how landscape structure, in conjunction with the population dynamics and reproductive characteristics of the tree species, influences genetic structure and long-term viability of hardwood forest stands on the Savannah River Site and in similar southeastern landscapes. Fragmentation of plant habitats can result in small, genetically isolated populations. Spatial isolation and small population size may have several consequences, including reduced reproduction, increased inbreeding and the stochastic loss of genetic variability. Such losses of genetic and genotypic diversity can reduce plant fitness and may diminish population viability. Deleterious genetic effects resulting from small population sizes can be ameliorated by gene flow via pollen and seed into fragmented populations.

  19. The Hardwood Gneiss: Evidence for high P-T Archean metamorphism in the southern province of the Lake Superior region

    SciTech Connect

    Peterson, J.W. ); Geiger, C.A. )

    1990-03-01

    The Hardwood Gneiss is an areally small unit of Precambrian granulite-grade rocks exposed in the Archean gneiss terrane of the southern Lake Superior region. The rocks are located in the southwestern portion of the Upper Peninsula of Michigan and consist of a structurally conformable package of quartzitic, metapelitic, amphibolitic, and metabasic units. Three texturally distinct garnet types are present in the metabasites and are interpreted to represent two metamorphic events. Geothermobarometry indicates conditions of {approximately}8.2-11.6 kbar and {approximately}770C for M1, and conditions of {approximately}6.0-10.1 kbar and {approximately}610-740C for M2. It is proposed that M1 was Archean and contemporaneous with a high-grade metamorphic event recorded in the Minnesota River Valley. The M2 event was probably Early Proterozoic and pre-Penokean, with metamorphic conditions more intense than those generally ascribed to the Penokean Orogeny in Michigan, but similar to the conditions reported for the Kapuskasing zone of Ontario. The high paleopressures and temperatures of the M1 event make the Hardwood Gneiss distinct from any rocks previously described in the southern Lake Superior region, and suggest intense tectonic activity during the Archean.

  20. Bio-oil production of softwood and hardwood forest industry residues through fast and intermediate pyrolysis and its chromatographic characterization.

    PubMed

    Torri, Isadora Dalla Vecchia; Paasikallio, Ville; Faccini, Candice Schmitt; Huff, Rafael; Caramão, Elina Bastos; Sacon, Vera; Oasmaa, Anja; Zini, Claudia Alcaraz

    2016-01-01

    Bio-oils were produced through intermediate (IP) and fast pyrolysis (FP), using Eucalyptus sp. (hardwood) and Picea abies (softwood), wood wastes produced in large scale in Pulp and Paper industries. Characterization of these bio-oils was made using GC/qMS and GC×GC/TOFMS. The use of GC×GC provided a broader characterization of bio-oils and it allowed tracing potential markers of hardwood bio-oil, such as dimethoxy-phenols, which might co-elute in 1D-GC. Catalytic FP increased the percentage of aromatic hydrocarbons in P. abies bio-oil, indicating its potential for fuel production. However, the presence of polyaromatic hydrocarbons (PAH) draws attention to the need of a proper management of pyrolysis process in order to avoid the production of toxic compounds and also to the importance of GC×GC/TOFMS use to avoid co-elutions and consequent inaccuracies related to identification and quantification associated with GC/qMS. Ketones and phenols were the major bio-oil compounds and they might be applied to polymer production. PMID:26556402

  1. Bio-oil production of softwood and hardwood forest industry residues through fast and intermediate pyrolysis and its chromatographic characterization.

    PubMed

    Torri, Isadora Dalla Vecchia; Paasikallio, Ville; Faccini, Candice Schmitt; Huff, Rafael; Caramão, Elina Bastos; Sacon, Vera; Oasmaa, Anja; Zini, Claudia Alcaraz

    2016-01-01

    Bio-oils were produced through intermediate (IP) and fast pyrolysis (FP), using Eucalyptus sp. (hardwood) and Picea abies (softwood), wood wastes produced in large scale in Pulp and Paper industries. Characterization of these bio-oils was made using GC/qMS and GC×GC/TOFMS. The use of GC×GC provided a broader characterization of bio-oils and it allowed tracing potential markers of hardwood bio-oil, such as dimethoxy-phenols, which might co-elute in 1D-GC. Catalytic FP increased the percentage of aromatic hydrocarbons in P. abies bio-oil, indicating its potential for fuel production. However, the presence of polyaromatic hydrocarbons (PAH) draws attention to the need of a proper management of pyrolysis process in order to avoid the production of toxic compounds and also to the importance of GC×GC/TOFMS use to avoid co-elutions and consequent inaccuracies related to identification and quantification associated with GC/qMS. Ketones and phenols were the major bio-oil compounds and they might be applied to polymer production.

  2. Propagation of Some Local Fig (Ficus carica L.) Cultivars by Hardwood Cuttings under the Field Conditions in Tunisia.

    PubMed

    Aljane, Fateh; Nahdi, Sabrine

    2014-01-01

    This research was carried out in Southeast of Tunisia in 2009 and 2010, in order to study the propagation of six (Ficus carica L.) cultivars by using hardwood cuttings under the field conditions. The effect of the cultivars and the type of buds, shoots age, shoots length, and shoots diameter were recorded. Ten cuttings per cultivar and/or cutting types with three replications were planted in rooting unit. Percentage of root emergence and six morphological parameters of young fig plants were measured. Results showed that the responses of cuttings as fig nursery plants presented a high variability among the five cultivars. The most widely varied characters were % root emergence (RE) and cumulative growth of young plant (CG). The first one ranged from 10% to 90%, the second varied within 32 and 112 cm. Concerning the ''BITHER" cultivar, 6 cutting types with different age, length, and diameter were evaluated. Results showed a great variation in % of root emergence (0-90%), length of nursery plant (3-77 cm), and number of roots/nursery plant (0-29 roots). The present research showed that the hardwood cutting of local fig cultivars can be propagated under field conditions in Southeast of Tunisia.

  3. Ectomycorrhizal colonization and diversity in relation to tree biomass and nutrition in a plantation of transgenic poplars with modified lignin biosynthesis.

    PubMed

    Danielsen, Lara; Lohaus, Gertrud; Sirrenberg, Anke; Karlovsky, Petr; Bastien, Catherine; Pilate, Gilles; Polle, Andrea

    2013-01-01

    Wood from biomass plantations with fast growing tree species such as poplars can be used as an alternative feedstock for production of biofuels. To facilitate utilization of lignocellulose for saccharification, transgenic poplars with modified or reduced lignin contents may be useful. However, the potential impact of poplars modified in the lignification pathway on ectomycorrhizal (EM) fungi, which play important roles for plant nutrition, is not known. The goal of this study was to investigate EM colonization and community composition in relation to biomass and nutrient status in wildtype (WT, Populus tremula × Populus alba) and transgenic poplar lines with suppressed activities of cinnamyl alcohol dehydrogenase, caffeate/5-hydroxyferulate O-methyltransferase, and cinnamoyl-CoA reductase in a biomass plantation. In different one-year-old poplar lines EM colonization varied from 58% to 86%, but the EM community composition of WT and transgenic poplars were indistinguishable. After two years, the colonization rate of all lines was increased to about 100%, but separation of EM communities between distinct transgenic poplar genotypes was observed. The differentiation of the EM assemblages was similar to that found between different genotypes of commercial clones of Populus × euramericana. The transgenic poplars exhibited significant growth and nutrient element differences in wood, with generally higher nutrient accumulation in stems of genotypes with lower than in those with higher biomass. A general linear mixed model simulated biomass of one-year-old poplar stems with high accuracy (adjusted R(2) = 97%) by two factors: EM colonization and inverse wood N concentration. These results imply a link between N allocation and EM colonization, which may be crucial for wood production in the establishment phase of poplar biomass plantations. Our data further support that multiple poplar genotypes regardless whether generated by transgenic approaches or conventional

  4. Ectomycorrhizal Colonization and Diversity in Relation to Tree Biomass and Nutrition in a Plantation of Transgenic Poplars with Modified Lignin Biosynthesis

    PubMed Central

    Danielsen, Lara; Lohaus, Gertrud; Sirrenberg, Anke; Karlovsky, Petr; Bastien, Catherine; Pilate, Gilles; Polle, Andrea

    2013-01-01

    Wood from biomass plantations with fast growing tree species such as poplars can be used as an alternative feedstock for production of biofuels. To facilitate utilization of lignocellulose for saccharification, transgenic poplars with modified or reduced lignin contents may be useful. However, the potential impact of poplars modified in the lignification pathway on ectomycorrhizal (EM) fungi, which play important roles for plant nutrition, is not known. The goal of this study was to investigate EM colonization and community composition in relation to biomass and nutrient status in wildtype (WT, Populus tremula × Populus alba) and transgenic poplar lines with suppressed activities of cinnamyl alcohol dehydrogenase, caffeate/5-hydroxyferulate O-methyltransferase, and cinnamoyl-CoA reductase in a biomass plantation. In different one-year-old poplar lines EM colonization varied from 58% to 86%, but the EM community composition of WT and transgenic poplars were indistinguishable. After two years, the colonization rate of all lines was increased to about 100%, but separation of EM communities between distinct transgenic poplar genotypes was observed. The differentiation of the EM assemblages was similar to that found between different genotypes of commercial clones of Populus × euramericana. The transgenic poplars exhibited significant growth and nutrient element differences in wood, with generally higher nutrient accumulation in stems of genotypes with lower than in those with higher biomass. A general linear mixed model simulated biomass of one-year-old poplar stems with high accuracy (adjusted R2 = 97%) by two factors: EM colonization and inverse wood N concentration. These results imply a link between N allocation and EM colonization, which may be crucial for wood production in the establishment phase of poplar biomass plantations. Our data further support that multiple poplar genotypes regardless whether generated by transgenic approaches or conventional

  5. GHGs balance in a land use change process from grassland to short rotation coppice of poplar

    NASA Astrophysics Data System (ADS)

    Sabbatini, Simone; Arriga, Nicola; Baiocco, Andrea; Boschi, Alessio; Castaldi, Simona; Consalvo, Claudia; Gioli, Beniamino; Matteucci, Giorgio; Tomassucci, Michele; Zaldei, Alessandro; Papale, Dario

    2013-04-01

    At present one of the fastest spreading renewable energy sources are bioenergy cultivations. Millions of hectares of traditional crops all over the Europe are expected to be converted in energy crops in the near future, in order to produce green energy and contrast global warming. Last year, in the context of the GHG-Europe FP7 project we set up an experiment to verify the effects on the green-house gases balance of a land use change from traditional agriculture to short rotation coppice of poplar clones in central Italy. CO2 fluxes measured during the last growing season through three Eddy Covariance masts - two on poplar plantations of different ages and one over a reference site (grassland) - have been analysed. We also monitored CO2, CH4 and N2O fluxes from soil measured using chambers in order to better understand the contribution of other GHGs. The two poplar plantations showed a similar uptake of Carbon, 368 g C m-2 year-1 and 358 g C m-2 year-1, while the grassland absorbed 220 g C m-2 year-1 during the same period. Soil respiration in average was higher for the youngest plantation of poplar and for the grassland, lower for the oldest one, where soil is undisturbed from more time. In all the sites we measured low emissions during the winter (between 80 and 150 mg CO2 m-2 h-1), progressively higher in the spring and early summer with growing temperatures (up to 650 mg CO2 m-2 h-1), quite low during the summer because of a strong drought, while the highest values were recorded in September (ca. 1100 mg CO2 m-2 h-1 in the grassland and youngest poplar) after important rain events. Fluxes of N2O and CH4 from soil are very low: little absorption of CH4 in the grassland (values between 0 and -18.75 μg m-2 h-1), with peak after fertilization; in the SRC little absorption or emission with no clear seasonal pattern. Insignificant fluxes of N2O in all crops (even in the grassland after fertilization). The carbon fluxes measured are strongly related to the particular

  6. Conversion from cropland to short rotation coppice willow and poplar: Accumulation of soil organic carbon

    NASA Astrophysics Data System (ADS)

    Georgiadis, Petros; Stupak, Inge; Vesterdal, Lars; Raulund-Rasmussen, Karsten

    2015-04-01

    Increased demand for bioenergy has intensified the production of Short Rotation Coppice (SRC) willow and poplar in temperate zones. We used a combined chronosequence and paired plot approach to study the potential of SRC willow and poplar stands to increase the soil carbon stock compared to stocks of the previous arable land-use. The study focused on well-drained soils. We sampled soil from 30 SRC stands in Denmark and southern Sweden including soils from their adjacent arable fields. The 18 willow and 12 poplar stands formed a chronosequence ranging between 4 and 29 years after conversion. The soil was sampled both with soil cores taken by fixed depths of 0-5, 5-10, 10-15, 15-25, and 25-40 cm and by genetic horizons from soil pits to 1m depth. The aim of the study was to estimate the difference and the ratio between soil carbon contents of the SRC and annual crop land and analyze the results as a chronosequence to examine the effect of age after conversion on the difference. Covariates such as soil type, fertilization type and harvest frequency were also taken into account. Preliminary results suggest an overall increase in carbon stocks over time with average accumulation rates ranging from 0.25 to 0.4 Mg ha-1 yr-1 in willow and poplar stands. Poplar stands had higher rates of C gain, probably due to less frequent harvesting. The differences in carbon between the SRC and the paired cropland were initially negative but changed to positive over time, implying loss of carbon after conversion and a later gain in soil carbon with stand age. Pairwise differences ranged from -25 Mg C ha-1 to 37 Mg C ha-1 for the top 40 cm. The carbon stock ratio of the SRC stand to the arable land was estimated to minimize the effect of site-related factors. The results of this analysis suggested that the ratio increased significantly with age after conversion for the top 10 cm of the soil, both for poplar and willow. A slight increase with age was also noticed at the deeper depths, but

  7. [Time lag effect between poplar' s sap flow velocity and microclimate factors in agroforestry system in West Liaoning Province].

    PubMed

    Di, Sun; Guan, De-xin; Yuan, Feng-hui; Wang, An-zhi; Wu, Jia-bing

    2010-11-01

    By using Granier's thermal dissipation probe, the sap flow velocity of the poplars in agroforestry system in west Liaoning was continuously measured, and the microclimate factors were measured synchronously. Dislocation contrast method was applied to analyze the sap flow velocity and corresponding air temperature, air humidity, net radiation, and vapor pressure deficit to discuss the time lag effect between poplar' s sap flow velocity and microclimate factors on sunny days. It was found that the poplar's sap flow velocity advanced of air temperature, air humidity, and vapor pressure deficit, and lagged behind net radiation. The sap flow velocity in June, July, August, and September was advanced of 70, 30, 50, and 90 min to air temperature, of 80, 30, 40, and 90 min to air humidity, and of 90, 50, 70, and 120 min to vapor pressure deficit, but lagged behind 10, 10, 40, and 40 min to net radiation, respectively. The time lag time of net radiation was shorter than that of air temperature, air humidity, and vapor pressure. The regression analysis showed that in the cases the time lag effect was contained and not, the determination coefficients between comprehensive microclimate factor and poplar's sap flow velocity were 0.903 and 0.855, respectively, indicating that when the time lag effect was contained, the determination coefficient was ascended by 2.04%, and thus, the simulation accuracy of poplar's sap flow velocity was improved. PMID:21360994

  8. [Time lag effect between poplar' s sap flow velocity and microclimate factors in agroforestry system in West Liaoning Province].

    PubMed

    Di, Sun; Guan, De-xin; Yuan, Feng-hui; Wang, An-zhi; Wu, Jia-bing

    2010-11-01

    By using Granier's thermal dissipation probe, the sap flow velocity of the poplars in agroforestry system in west Liaoning was continuously measured, and the microclimate factors were measured synchronously. Dislocation contrast method was applied to analyze the sap flow velocity and corresponding air temperature, air humidity, net radiation, and vapor pressure deficit to discuss the time lag effect between poplar' s sap flow velocity and microclimate factors on sunny days. It was found that the poplar's sap flow velocity advanced of air temperature, air humidity, and vapor pressure deficit, and lagged behind net radiation. The sap flow velocity in June, July, August, and September was advanced of 70, 30, 50, and 90 min to air temperature, of 80, 30, 40, and 90 min to air humidity, and of 90, 50, 70, and 120 min to vapor pressure deficit, but lagged behind 10, 10, 40, and 40 min to net radiation, respectively. The time lag time of net radiation was shorter than that of air temperature, air humidity, and vapor pressure. The regression analysis showed that in the cases the time lag effect was contained and not, the determination coefficients between comprehensive microclimate factor and poplar's sap flow velocity were 0.903 and 0.855, respectively, indicating that when the time lag effect was contained, the determination coefficient was ascended by 2.04%, and thus, the simulation accuracy of poplar's sap flow velocity was improved.

  9. Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.

    PubMed

    Taghavi, Safiyh; Garafola, Craig; Monchy, Sébastien; Newman, Lee; Hoffman, Adam; Weyens, Nele; Barac, Tanja; Vangronsveld, Jaco; van der Lelie, Daniel

    2009-02-01

    The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.

  10. Collapse of riparian poplar forests downstream from dams in western prairies: Probable causes and prospects for mitigation

    NASA Astrophysics Data System (ADS)

    Rood, Stewart B.; Mahoney, John M.

    1990-07-01

    Although historically abundant, the riparian poplar forests of the western prairies are now endangered as a result of the damming and diversion of rivers in this region. Recent reports have described substantial declines of riparian poplar forests downstream from dams in Alberta, Canada; Montana, North Dakota, Wyoming, Colorado, and Arizona, USA. The present report analyzes the forest and hydrological conditions reported previously in order to clarify the causes of the downstream forest decline. Dams were found to contribute to forest failure by (1) reducing downstream flows and/or (2) altering flow patterns to attenuate spring flooding and/or stabilize summer flows. Reduced flows are reported to induce drought stress, which is particularly lethal to seedlings and very old poplars. The artificial moderation of spring flooding may inhibit the formation of seedbeds essential for seedling replenishment. Increased river valley development involving cattle grazing, agricultural clearing, and direct harvesting of trees also contributes to forest failure. Potential methods for mitigating the impacts of dams on downstream forests include downstream flow schedules that (1) retain occasional spring flooding, (2) taper off rather than abruptly drop downstream flow, and (3) provide adequate flows throughout the summer. Poplar forest stabilization and recovery can be further promoted by fencing to protect trees from livestock grazing and trampling, or artificial site preparation such as cultivation or scarification to encourage poplar regeneration.

  11. Successful crossings with early flowering transgenic poplar: interspecific crossings, but not transgenesis, promoted aberrant phenotypes in offspring.

    PubMed

    Hoenicka, Hans; Lehnhardt, Denise; Nilsson, Ove; Hanelt, Dieter; Fladung, Matthias

    2014-10-01

    In forest tree species, the reproductive phase is reached only after many years or even decades of juvenile growth. Different early flowering systems based on the genetic transfer of heat-shock promoter driven flowering-time genes have been proposed for poplar; however, no fertile flowers were reported until now. Here, we studied flower and pollen development in both HSP::AtFT and wild-type male poplar in detail and developed an optimized heat treatment protocol to obtain fertile HSP::AtFT flowers. Anthers from HSP::AtFT poplar flowers containing fertile pollen grains showed arrested development in stage 12 instead of reaching phase 13 as do wild-type flowers. Pollen grains could be isolated under the binocular microscope and were used for intra- and interspecific crossings with wild-type poplar. F1-seedlings segregating the HSP::AtFT gene construct according to Mendelian laws were obtained. A comparison between intra- and interspecific crossings revealed that genetic transformation had no detrimental effects on F1-seedlings. However, interspecific crossings, a broadly accepted breeding method, produced 47% seedlings with an aberrant phenotype. The early flowering system presented in this study opens new possibilities for accelerating breeding of poplar and other forest tree species. Fast breeding and the selection of transgene-free plants, once the breeding process is concluded, can represent an attractive alternative even under very restrictive regulations. PMID:24975279

  12. Genome Survey and Characterization of Endophytic Bacteria Exhibiting a Beneficial Effect on Growth and Development of Poplar Trees ▿ †

    PubMed Central

    Taghavi, Safiyh; Garafola, Craig; Monchy, Sébastien; Newman, Lee; Hoffman, Adam; Weyens, Nele; Barac, Tanja; Vangronsveld, Jaco; van der Lelie, Daniel

    2009-01-01

    The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides × Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels. PMID:19060168

  13. Isotopic signals from precipitation and denitrification in nitrate in a northern hardwood forest

    NASA Astrophysics Data System (ADS)

    Goodale, C. L.; Wexller, S.

    2012-12-01

    mil for denitrification removal of nitrate in these hillslope soils. The isotopic composition of a time series of samples from three riparian piezometers crossing Paradise Brook shows strong connections between the riparian soil water and the stream, as well as a different dominant source of nitrate in each piezometer. Repeated surveys of stream nitrate show modest positive enrichment in N and O isotopes with a slope between 18O and 15N of 0.96, indicating either in- or near-stream denitrification or mixing between stream and hillslope water bearing a stronger denitrification signal. The dual isotope approach provides detailed information on nitrogen cycling dynamics during the summer in a northern hardwood forested catchment. Together, these observations provide strong isotopic evidence for rapid rates of denitrification during summer in the soils of this small forested catchment.

  14. Mineral Soil Carbon in Managed Hardwood Forests of the Northeastern US

    NASA Astrophysics Data System (ADS)

    Vario, C.; Friedland, A.; Hornig, C.

    2013-12-01

    New England is characterized by extensive forest cover and large reservoirs of soil carbon (C). In northern hardwood forests, mineral soil C can account for up to 50% of total ecosystem C. There has been an increasing demand for forests to serve both as a C sink and a renewable energy source, and effective management of the ecosystem C balance relies on accurate modeling of each compartment of the ecosystem. However, the dynamics of soil C storage with respect to forest use are variable and poorly understood, particularly in mineral soils. For example, current regional models assume C pools after forest harvesting do not change, while some studies suggest that belowground mineral soil C pools can be affected by disturbances at the soil surface. We quantified mineral soil C pools in previously clear-cut stands in seven research or protected forests across New York, New Hampshire, Massachusetts, and Vermont. The ages of the sites sampled ranged from recently cleared to those with no disturbance history, with 21 forest stands represented in the study. Within each research forest studied, physical parameters such as soil type, forest type, slope and land-use history (aside from forest harvest) did not vary between the stands of different ages. Soil samples were collected to a depth of 60 cm below the mineral-organic boundary using a gas-powered augur and 9.5-cm diameter drill bit. Samples were collected in 10-cm increments in shallow mineral soil and 15-cm increments from 30-60 cm depth. Carbon, nitrogen (N), pH, texture and soil mineralogy were measured across the regional sites. At Bartlett Experimental Forest (BEF) in New Hampshire, mineral soil biogeochemistry in cut and uncut sites was studied at a finer scale. Measurements included soil temperature to 55 cm depth, carbon compound analyses using Py-GCMS and soil microbial messenger RNA extractions from mineral soil. Finally, we simulated C dynamics after harvesting by building a model in Stella, with a particular

  15. Quantifying the Role of Bottomland Hardwood Forest Flood Attenuation in the Central U.S

    NASA Astrophysics Data System (ADS)

    Hubbart, J. A.; Bulliner, E. A.; Freeman, G. W.; Scollan, D. P.; Romine, J.; Chinnasamy, P.; Huang, D.; Schulz, J.

    2010-12-01

    Contemporary floodplain management is a growing concern, particularly in regions where climate change predictions include increased precipitation such as the central U.S. and Missouri. Historically, bottomland hardwood forests (BHF) played a significant role in runoff and flood attenuation. However, most of the floodplain BHF in Missouri was removed in the 19th and 20th centuries to cultivate the rich underlying soils. In many instances, BHF conversion required the installation of drainage and flood control structures, such as drainage tiles, ditches, levees, and dams. Many stream and river channels were straightened and enlarged to further reduce flooding. Structural changes, coupled with changes in vegetation and soils, drastically altered the hydrology of streams, floodplains, and the remnant BHF. Today, century-old management practices are coming under scrutiny in the Midwest in terms of management efficacy in contemporary urbanizing watersheds. Therefore, work is being conducted in central Missouri to quantify current floodplain flow attenuation of a 303(d) listed impaired urban stream. Instrumentation was installed in lower reaches of the Hinkson Creek Watershed (230km2) in the spring of 2010 in a case study comparing a remnant BHF and an abandoned agricultural floodplain site using replicated study designs. Instrumentation includes two 80 m2 grids of nine equally spaced four meter deep piezometers to monitor groundwater flow and volumetric water content (VWC) sensor profiles that monitor VWC at 15, 30, 50, 75 and 100 cm depth. Grids were enlarged to 120 m2 to measure leaf area index (LAI), surface infiltration capacity with double ring infiltrometers, and soil characteristics. Soil characteristics were quantified by extracting soil cores at soil depths of 0, 15, 30, 50, 75 and 100 cm (n = 302). LAI in the BHF was on average 3.06 (SD = 0.65, min = 1.31, max = 4.38, n = 42). Preliminary analysis indicates that average infiltration capacity is 44 cm/hr (SD = 38

  16. A Threshold Relation Between Harvest Intensity and Stream Chemistry in a Northern Hardwood Forest of the Northeastern U.S.

    NASA Astrophysics Data System (ADS)

    Burns, D. A.; Murdoch, P. S.

    2006-12-01

    Clearcutting of northern hardwood forests in mountainous landscapes of the northeastern U.S. has been shown to cause large increases in stream nitrate (NO3-) concentrations accompanied by increased stream acidity, elevated losses of nutrient base cations, and aluminum concentrations sufficient to be toxic to brook trout. An 18 ha clearcut in the Catskill Mountains of southeastern New York, USA in 1997 resulted in stream NO3- concentrations that peaked at > 1,000 μmol L-1, and base cation (Ca2+, Mg2+, K+) concentrations that increased by more than three-fold during the first year after harvest. In contrast, previous timber-stand improvement harvests in 1995 and 1996 in which < 10% of tree basal area was removed from watersheds, resulted in no measurable change in stream water chemistry. Based on an analysis of these previous data, we hypothesized that there is likely a harvest threshold for changes in stream-water chemistry below which only minimal and tolerable changes in water quality occur. We tested this hypothesis by completing four forest harvests during 2002 to 2006 in which varying amounts of basal area were removed from northern hardwood forest plots and watersheds. These results have shown that at a basal area removal of about 33%, stream NO3- and K+ concentrations increased, but less than proportionally to the concentration changes observed after the clearcut. Calcium and Mg2+ concentrations increased as well, but these changes were about proportional to the concentration changes observed after the clearcut. Additionally, stream NO3- concentrations returned to background values within two years at the 33% partial harvest compared to about eight years in the clearcut. Soil-water lysimeter data from two other harvests in which 30 and 50% of basal area were removed from hardwood forest plots are consistent with that of the previous partial harvest. Nitrate concentrations increased less than proportionally to the changes observed after the clearcut, and

  17. Flare Hybrids

    NASA Astrophysics Data System (ADS)

    Tomczak, M.; Dubieniecki, P.

    2015-12-01

    On the basis of the Solar Maximum Mission observations, Švestka ( Solar Phys. 121, 399, 1989) introduced a new class of flares, the so-called flare hybrids. When they start, they look like typical compact flares (phase 1), but later on, they look like flares with arcades of magnetic loops (phase 2). We summarize the characteristic features of flare hybrids in soft and hard X-rays as well as in the extreme ultraviolet;