Neural Network Technique for Global Ocean Color (Chl-a) Estimates Bridging Multiple Satellite Missions

NASA Astrophysics Data System (ADS)

Garraffo, Z. D.; Nadiga, S.; Krasnopolsky, V.; Mehra, A.; Bayler, E. J.; Kim, H. C.; Behringer, D.

2016-02-01

A Neural Network (NN) technique is used to produce consistent global ocean color estimates, bridging multiple satellite ocean color missions by linking ocean color variability - primarily driven by biological processes - with the physical processes of the upper ocean. Satellite-derived surface variables - sea-surface temperature (SST) and sea-surface height (SSH) fields - are used as signatures of upper-ocean dynamics. The NN technique employs adaptive weights that are tuned by applying statistical learning (training) algorithms to past data sets, providing robustness with respect to random noise, accuracy, fast emulations, and fault-tolerance. This study employs Sea-viewing Wide Field-of-View Sensor (SeaWiFS) chlorophyll-a data for 1998-2010 in conjunction with satellite SSH and SST fields. After interpolating all data sets to the same two-degree latitude-longitude grid, the annual mean was removed and monthly anomalies extracted . The NN technique wass trained for even years of that period and tested for errors and bias for the odd years. The NN output are assessed for: (i) bias, (ii) variability, (iii) root-mean-square error (RMSE), and (iv) cross-correlation. A Jacobian is evaluated to estimate the impact of each input (SSH, SST) on the NN chlorophyll-a estimates. The differences between an ensemble of NNs vs a single NN are examined. After the NN is trained for the SeaWiFS period, the NN is then applied and validated for 2005-2015, a period covered by other satellite missions — the Moderate Resolution Imaging Spectroradiometer (MODIS AQUA) and the Visible Imaging Infrared Radiometer Suite (VIIRS).

Potential of space-borne GNSS reflectometry to constrain simulations of the ocean circulation. A case study for the South African current system

NASA Astrophysics Data System (ADS)

Saynisch, Jan; Semmling, Maximilian; Wickert, Jens; Thomas, Maik

2015-11-01

The Agulhas current system transports warm and salty water masses from the Indian Ocean into the Southern Ocean and into the Atlantic. The transports impact past, present, and future climate on local and global scales. The size and variability, however, of the respective transports are still much debated. In this study, an idealized model based twin experiment is used to study whether sea surface height (SSH) anomalies estimated from reflected signals of the Global Navigation Satellite System reflectometry (GNSS-R) can be used to determine the internal water mass properties and transports of the Agulhas region. A space-borne GNSS-R detector on the International Space Station (ISS) is assumed and simulated. The detector is able to observe daily SSH fields with a spatial resolution of 1-5∘. Depending on reflection geometry, the precision of a single SSH observation is estimated to reach 3 cm (20 cm) when the carrier phase (code delay) information of the reflected GNSS signal is used. The average precision over the Agulhas region is 7 cm (42 cm). The proposed GNSS-R measurements surpass the radar-based satellite altimetry missions in temporal and spatial resolution but are less precise. Using the estimated GNSS-R characteristics, measurements of SSH are generated by sampling a regional nested general circulation model of the South African oceans. The artificial observations are subsequently assimilated with a 4DVAR adjoint data assimilation method into the same ocean model but with a different initial state and forcing. The assimilated and the original, i.e., the sampled model state, are compared to systematically identify improvements and degradations in the model variables that arise due to the assimilation of GNSS-R based SSH observations. We show that SSH and the independent, i.e., not assimilated model variables velocity, temperature, and salinity improve by the assimilation of GNSS-R based SSH observations. After the assimilation of 90 days of SSH observations, improvements in the independent variables cover the whole water column. Locally, up to 39 % of the original model state are recovered. Shorter assimilation windows result in enhanced reproduction of the observed and assimilated SSH but are accompanied by an insufficient or wrong recovery of sub-surface water properties. The assimilation of real GNSS-R observations, when available, and consequently the estimation of Agulhas water mass properties and the leakage of heat and salt into the Atlantic will benefit from this model-based study.

Seasonal and Interannual Variability of the Brazil - Malvinas Front: an Altimetry Perspective

NASA Astrophysics Data System (ADS)

Saraceno, M.; Valla, D.; Pelegrí, J. L.; Piola, A. R.

2016-02-01

The Brazil and Malvinas Confluence in the Southwestern Atlantic is one of the most energetic regions of the world ocean. Using recent measurements of sub-surface velocity currents, collected along 2348 nautical miles with a vessel mounted acoustic Doppler profiler onboard R/V BIO Hespérides, we validate geostrophic velocities derived from gridded fields of sea surface height (SSH). A remarkable correspondence between in-situ surface hydrographic data collected from the vessel and satellite sea surface temperature (SST), color and altimetry data allows selecting a specific SSH contour to track the position of the Brazil-Malvinas front. We then use 22 years of SSH data distributed by AVISO to show that the Brazil-Malvinas front shows a NS orientation in winter and a NE-SW orientation in summer, in good agreement with results based on the analysis of SST gradients. Furthermore, a clear southward migration of the front during the 22 year period is observed. The migration is associated with the southward shift of the South Atlantic high-pressure system that is in turn related to large climate changes in the southern portion of the South American continent. The seasonal variability in the orientation of the front is related to the Brazil and Malvinas encountering currents.

Response of the North Atlantic dynamic sea level and circulation to Greenland meltwater and climate change in an eddy-permitting ocean model

NASA Astrophysics Data System (ADS)

Saenko, Oleg A.; Yang, Duo; Myers, Paul G.

2017-10-01

The response of the North Atlantic dynamic sea surface height (SSH) and ocean circulation to Greenland Ice Sheet (GrIS) meltwater fluxes is investigated using a high-resolution model. The model is forced with either present-day-like or projected warmer climate conditions. In general, the impact of meltwater on the North Atlantic SSH and ocean circulation depends on the surface climate. In the two major regions of deep water formation, the Labrador Sea and the Nordic Seas, the basin-mean SSH increases with the increase of the GrIS meltwater flux. This SSH increase correlates with the decline of the Atlantic meridional overturning circulation (AMOC). However, while in the Labrador Sea the warming forcing and GrIS meltwater input lead to sea level rise, in the Nordic Seas these two forcings have an opposite influence on the convective mixing and basin-mean SSH (relative to the global mean). The warming leads to less sea-ice cover in the Nordic Seas, which favours stronger surface heat loss and deep mixing, lowering the SSH and generally increasing the transport of the East Greenland Current. In the Labrador Sea, the increased SSH and weaker deep convection are reflected in the decreased transport of the Labrador Current (LC), which closes the subpolar gyre in the west. Among the two major components of the LC transport, the thermohaline and bottom transports, the former is less sensitive to the GrIS meltwater fluxes under the warmer climate. The SSH difference across the LC, which is a component of the bottom velocity, correlates with the long-term mean AMOC rate.

Understanding the Steric Height Long Term Variability at the Bermuda Atlantic Time-Series Study (BATS) Site with a Neutral Density Approach

NASA Astrophysics Data System (ADS)

Goncalves Neto, A.; Johnson, R. J.; Bates, N. R.

2016-02-01

Rising sea level is one of the main concerns for human life in a scenario with global atmosphere and ocean warming, which is of particular concern for oceanic islands. Bermuda, located in the center of the Sargasso Sea, provides an ideal location to investigate sea level rise since it has a long term tide gauge (1933-present) and is in close proximity to deep ocean time-series sites, namely, Hydrostation `S' (1954-present) and the Bermuda Atlantic Time-Series Study site (1988-present). In this study, we use the monthly CTD deep casts at BATS to compute the contribution of steric height (SH) to the local sea surface height (SSH) for the past 24 years. To determine the relative contribution from the various water masses we first define 8 layers (Surface Layer, Upper Thermocline, Subtropical Mode-Water, Lower Thermocline, Antarctic Intermediate Water, Labrador Sea Water, Iceland-Scotland Overflow Water, Denmark Strait Overflow Water) based on neutral density criteria for which SH is computed. Additionally, we calculate the thermosteric and halosteric components for each of the defined neutral density layers. Surprisingly, the results show that, despite a 3.3mm/yr sea level rise observed at the Bermuda tide gauge, the steric contribution to the SSH at BATS has decreased at a rate of -1.1mm/yr during the same period. The thermal component is found to account for the negative trend in the steric height (-4.4mm/yr), whereas the halosteric component (3.3mm/yr) partially compensates the thermal signal and can be explained by an overall cooling and freshening at the BATS site. Although the surface layer and the upper thermocline waters are warming, all the subtropical and polar water masses, which represent most of the local water column, are cooling and therefore drive the overall SH contribution to the local SSH. Hence, it suggests that the mass contribution to the local SSH plays an important role in the sea level rise, for which we investigate with GRACE data.

Timescales of Equatorward Transport through the Solomon Sea from Glider and Altimetry

NASA Astrophysics Data System (ADS)

Hristova, H. G.; Kessler, W. S.; Davis, R.

2016-12-01

Passage through the semi-enclosed Solomon Sea is the last hurdle in the equatorward journey of the South Pacific western boundary currents before reaching the equator where they contribute to the mass, heat and salt budgets of the equatorial Pacific. We use satellite sea surface height (SSH) and in-situ data from 10 years of glider observations in the Solomon Sea to relate surface geostrophic currents to equatorward transport variability estimated from the gliders. The interior Solomon Sea has enhanced SSH variability compared to the surrounding ocean — its magnitude is largest on ENSO timescales, but also includes significant contributions from the annual and intraseasonal (<120 days) frequencies. Intraseasonal surface variability is dominated by basin-scale, westward propagating disturbances with 60-90 day period, consistent with basin resonance. Because the period of these disturbances is comparable to the time it takes a glider to complete a section across the Sea, the energetic intraseasonal variability is aliased in the glider data and results in section to section spikes in the glider transport estimates. Lower frequency (interannual and annual) SSH correlates well with dynamic height relative to 500m from the glider. Thus, a good lower frequency transport time-series can be obtained from SSH alone. However, the glider provides in addition a vertical structure for the mass transport, as well as estimates of heat and salt transport through the Sea. Two major El Nino events (2009/2010 and 2015/2016) occurred during the glider observation period, both of which show a distinct signature in the mass and heat transport anomalies.

Mean Dynamic Topography of the Arctic Ocean

NASA Technical Reports Server (NTRS)

Farrell, Sinead Louise; Mcadoo, David C.; Laxon, Seymour W.; Zwally, H. Jay; Yi, Donghui; Ridout, Andy; Giles, Katherine

2012-01-01

ICESat and Envisat altimetry data provide measurements of the instantaneous sea surface height (SSH) across the Arctic Ocean, using lead and open water elevation within the sea ice pack. First, these data were used to derive two independent mean sea surface (MSS) models by stacking and averaging along-track SSH profiles gathered between 2003 and 2009. The ICESat and Envisat MSS data were combined to construct the high-resolution ICEn MSS. Second, we estimate the 5.5-year mean dynamic topography (MDT) of the Arctic Ocean by differencing the ICEn MSS with the new GOCO02S geoid model, derived from GRACE and GOCE gravity. Using these satellite-only data we map the major features of Arctic Ocean dynamical height that are consistent with in situ observations, including the topographical highs and lows of the Beaufort and Greenland Gyres, respectively. Smaller-scale MDT structures remain largely unresolved due to uncertainties in the geoid at short wavelengths.

A Record-High Ocean Bottom Pressure in the South Pacific Observed by GRACE

NASA Technical Reports Server (NTRS)

Boening, Carmen; Lee, Tong; Zlotnicki, Victor

2011-01-01

In late 2009 to early 2010, the Gravity Recovery and Climate Experiment (GRACE) satellite pair observed a record increase in ocean bottom pressure (OBP) over a large mid-latitude region of the South East Pacific. Its magnitude is substantially larger than other oceanic events in the Southern Hemisphere found in the entire GRACE data records (2003-2010) on multi-month time scales. The OBP data help to understand the nature of a similar signal in sea surface height (SSH) anomaly observed by altimetry: the SSH increase is mainly due to mass convergence. Analysis of the barotropic vorticity equation using scatterometer data, atmospheric reanalysis product, and GRACE and altimeter an atmospheric reanalysis product observations suggests that the observed OBP/SSH signal was primarily caused by wind stress curl associated with a strong and persistent anticyclone in late 2009 in combination with effects of planetary vorticity gradient, bottom topography, and friction

Proposal and Implementation of SSH Client System Using Ajax

NASA Astrophysics Data System (ADS)

Kosuda, Yusuke; Sasaki, Ryoichi

Technology called Ajax gives web applications the functionality and operability of desktop applications. In this study, we propose and implement a Secure Shell (SSH) client system using Ajax, independent of the OS or Java execution environment. In this system, SSH packets are generated on a web browser by using JavaScript and a web server works as a proxy in communication with an SSH server to realize end-to-end SSH communication. We implemented a prototype program and confirmed by experiment that it runs on several web browsers and mobile phones. This system has enabled secure SSH communication from a PC at an Internet cafe or any mobile phone. By measuring the processing performance, we verified satisfactory performance for emergency use, although the speed was unsatisfactory in some cases with mobile phone. The system proposed in this study will be effective in various fields of E-Business.

The Effect of Ocean Currents on Sea Surface Temperature Anomalies

NASA Technical Reports Server (NTRS)

Stammer, Detlef; Leeuwenburgh, Olwijn

2000-01-01

We investigate regional and global-scale correlations between observed anomalies in sea surface temperature and height. A strong agreement between the two fields is found over a broad range of latitudes for different ocean basins. Both time-longitude plots and wavenumber-frequency spectra suggest an advective forcing of SST anomalies by a first-mode baroclinic wave field on spatial scales down to 400 km and time scales as short as 1 month. Even though the magnitude of the mean background temperature gradient is determining for the effectiveness of the forcing, there is no obvious seasonality that can be detected in the amplitudes of SST anomalies. Instead, individual wave signatures in the SST can in some cases be followed over periods of two years. The phase relationship between SST and SSH anomalies is dependent upon frequency and wavenumber and displays a clear decrease of the phase lag toward higher latitudes where the two fields come into phase at low frequencies. Estimates of the damping coefficient are larger than generally obtained for a purely atmospheric feedback. From a global frequency spectrum a damping time scale of 2-3 month was found. Regionally results are very variable and range from 1 month near strong currents to 10 month at low latitudes and in the sub-polar North Atlantic. Strong agreement is found between the first global EOF modes of 10 day averaged and spatially smoothed SST and SSH grids. The accompanying time series display low frequency oscillations in both fields.

Altimeter‐derived seasonal circulation on the southwest Atlantic shelf: 27°–43°S

PubMed Central

James, Corinne; Combes, Vincent; Matano, Ricardo P.; Piola, Alberto R.; Palma, Elbio D.; Saraceno, Martin; Guerrero, Raul A.; Fenco, Harold; Ruiz‐Etcheverry, Laura A.

2015-01-01

Abstract Altimeter sea surface height (SSH) fields are analyzed to define and discuss the seasonal circulation over the wide continental shelf in the SW Atlantic Ocean (27°–43°S) during 2001–2012. Seasonal variability is low south of the Rio de la Plata (RdlP), where winds and currents remain equatorward for most of the year. Winds and currents in the central and northern parts of our domain are also equatorward during autumn and winter but reverse to become poleward during spring and summer. Transports of shelf water to the deep ocean are strongest during summer offshore and to the southeast of the RdlP. Details of the flow are discussed using mean monthly seasonal cycles of winds, heights, and currents, along with analyses of Empirical Orthogonal Functions. Principle Estimator Patterns bring out the patterns of wind forcing and ocean response. The largest part of the seasonal variability in SSH signals is due to changes in the wind forcing (described above) and changes in the strong boundary currents that flow along the eastern boundary of the shelf. The rest of the variability contains a smaller component due to heating and expansion of the water column, concentrated in the southern part of the region next to the coast. Our results compare well to previous studies using in situ data and to results from realistic numerical models of the regional circulation. PMID:27656332

Research ethics in the dynamic of scientific field: challenges in the building of guidelines for social sciences and humanities.

PubMed

Guerriero, Iara Coelho Zito; Bosi, Maria Lúcia Magalhães

2015-09-01

The development of guidelines on research ethics for social science and humanities (SSH) takes place in the scientific field, marked by disputes aimed at the establishment of hegemonic scientific standard. In Brazil, the National Health Council is responsible for approving these guidelines, which involve certain specificities. Based on the authors' experience in the SSH Working Group of the National Commission on Research Ethics (GT CHS / CONEP), this article presents the process of development of guidelines for SSH, and some its challenges: the distance between the statutory guarantee and the effective execution of guidelines; the biomedical hegemony and the marginal position of the SSH in the CEP / CONEP system; the inadequacy of the current resolution facing the research features in CHS; the use of the concept of risk in guidelines aimed at SSH in the health area. Some interfaces and tensions in the debate between scientific merit and ethical evaluation are also discussed. The analysis highlights important impasses and difficulties regarding inter-paradigmatic dialogue in health research, considered the characteristics of the different traditions, the CONEP's heavily relying on the positivist perspective and the defense of that paradigm hegemony.

Ocean Wave Studies with Applications to Ocean Modeling and Improvement of Satellite Altimeter Measurements

NASA Technical Reports Server (NTRS)

Glazman, Roman E.

1999-01-01

Combining analysis of satellite data (altimeter, scatterometer, high-resolution visible and infrared images, etc.) with mathematical modeling of non-linear wave processes, we investigate various ocean wave fields (on scales from capillary to planetary), their role in ocean dynamics and turbulent transport (of heat and biogeochemical quantities), and their effects on satellite altimeter measuring accuracy. In 1998 my attention was focused on long internal gravity waves (10 to 1000 km), known also as baroclinic inertia-gravity (BIG) waves. We found these waves to be a major factor of altimeter measurements "noise," resulting in a greater uncertainty [up to 10 cm in terms of sea surface height (SSH) amplitude] in the measured SSH signal than that caused by the sea state bias variations (up to 5 cm or so). This effect still remains largely overlooked by the satellite altimeter community. Our studies of BIG waves address not only their influence on altimeter measurements but also their role in global ocean dynamics and in transport and turbulent diffusion of biogeochemical quantities. In particular, in collaboration with Prof Peter Weichman, Caltech, we developed a theory of turbulent diffusion caused by wave motions of most general nature. Applied to the problem of horizontal turbulent diffusion in the ocean, the theory yielded the effective diffusion coefficient as a function of BIG wave parameters obtainable from satellite altimeter data. This effort, begun in 1997, has been successfully completed in 1998. We also developed a theory that relates spatial fluctuations of scalar fields (such as sea surface temperature, chlorophyll concentration, drifting ice concentration, etc.) to statistical characteristics of BIG waves obtainable from altimeter measurements. A manuscript is in the final stages of preparation. In order to verify the theoretical predictions and apply them to observations, we are now analyzing Sea-viewing Wide Field of view Sensor (SeaWiFS) and Field of view Sensor (SeaWiFS) and Advanced Very High-Resolution Radiometer (AVHRR) data on sea surface temperature (SST) and chlorophyll concentration jointly with TOPEX/POSEIDON data on SSH variations.

Determination of Mean Dynamic Topography (MDT) to Bridge Geoid and Mean Sea Surface Height (SSH) with a New Elliptic Equation

NASA Astrophysics Data System (ADS)

Chu, P. C.

2016-12-01

Mean dynamic topography (MDT, η) bridges the geoid and the mean sea surface (from satellite altimetry) and constrains large scale surface geostrophic circulations. It can be estimated from either satellite or underwater ocean temperature (T) and salinity (S) data. Satellite altimeter measures sea surface height (SSH) with high precision and unique resolution above a reference ellipsoid (not geoid). Two Gravity Recovery and Climate Experiment (GRACE) satellites launched in 2002, provide data to compute the marine geoid [called the GRACE Gravity Model (GGM)] (see website: http://www.csr.utexas.edu/grace/). The MDT is the difference of altimetry-derived mean SSH and the mean marine geoid (using GGM or pre-GRACE gravity model such as EGM96). A major difficulty arises that the spatial variations in mean SSH and marine geoid are approximately two orders of magnitude larger than the spatial variations in η.The second approach (using T, Sdata) is based on geostrophic balance, which is at the minimum energy state in the linear Boussinesq primitive equations with conservation of potential vorticity. In this paper, a new elliptic equation, -[∂x(gh/f2)∂xη+∂y(gh/f2)∂yη]+η = (g/f2)(∂C/∂x-∂B/∂y)is derived to determine MDT with H the water depth, g the gravitational acceleration, and coefficients (B, C) depend on 3D mean temperature (T) and salinity (S) data. Numerical approach transforms the elliptic equation into a set of well-posed linear algebraic equations of η at grid points. The solution for the North Atlantic Ocean (100oW-6oW, 7oN-72oN) on 1oX1ogrids with the coefficients (B, C) calculated from the three-dimensional (T, S) data of the NOAA National Centers for Environmental Information (NCEI) World Ocean Atlas 2013 version 2 (http://www.nodc.noaa.gov/OC5/woa13/woa13data.html) and H from the NOAA ETOPO5 (https://www.ngdc.noaa.gov/mgg/fliers/93mgg01.html), compares well with the difference (also considered as the MDT) between the time-averaged SSH and the geoid from the NASA/JPL (http://gracetellus.jpl.nasa.gov/data/dot/). Further application of this elliptic equation method on the high-precision altimetry measurements of SSH such as the Surface Water and Ocean Topography (SWOT) is also presented.

Lessons Learned from Assimilating Altimeter Data into a Coupled General Circulation Model with the GMAO Augmented Ensemble Kalman Filter

NASA Technical Reports Server (NTRS)

Keppenne, Christian; Vernieres, Guillaume; Rienecker, Michele; Jacob, Jossy; Kovach, Robin

2011-01-01

Satellite altimetry measurements have provided global, evenly distributed observations of the ocean surface since 1993. However, the difficulties introduced by the presence of model biases and the requirement that data assimilation systems extrapolate the sea surface height (SSH) information to the subsurface in order to estimate the temperature, salinity and currents make it difficult to optimally exploit these measurements. This talk investigates the potential of the altimetry data assimilation once the biases are accounted for with an ad hoc bias estimation scheme. Either steady-state or state-dependent multivariate background-error covariances from an ensemble of model integrations are used to address the problem of extrapolating the information to the sub-surface. The GMAO ocean data assimilation system applied to an ensemble of coupled model instances using the GEOS-5 AGCM coupled to MOM4 is used in the investigation. To model the background error covariances, the system relies on a hybrid ensemble approach in which a small number of dynamically evolved model trajectories is augmented on the one hand with past instances of the state vector along each trajectory and, on the other, with a steady state ensemble of error estimates from a time series of short-term model forecasts. A state-dependent adaptive error-covariance localization and inflation algorithm controls how the SSH information is extrapolated to the sub-surface. A two-step predictor corrector approach is used to assimilate future information. Independent (not-assimilated) temperature and salinity observations from Argo floats are used to validate the assimilation. A two-step projection method in which the system first calculates a SSH increment and then projects this increment vertically onto the temperature, salt and current fields is found to be most effective in reconstructing the sub-surface information. The performance of the system in reconstructing the sub-surface fields is particularly impressive for temperature, but not as satisfactory for salt.

Trends in Arctic Ocean bottom pressure, sea surface height and freshwater content using GRACE and the ice-ocean model PIOMAS from 2008-2012

NASA Astrophysics Data System (ADS)

Peralta-Ferriz, Cecilia; Morison, James; Zhang, Jinlun; Bonin, Jennifer

2014-05-01

The variability of ocean bottom pressure (OBP) in the Arctic is dominated by the variations in sea surface height (SSH) from daily to monthly timescales. Conversely, OBP variability is dominated by the changes in the steric pressure (StP) at inter-annual timescales, particularly off the continental shelves. The combination of GRACE-derived ocean bottom pressure and ICESat altimetry-derived sea surface height variations in the Arctic Ocean have provided new means of identifying inter-annual trends in StP (StP = OBP-SSH) and associated freshwater content (FWC) of the Arctic region (Morison et al., 2012). Morison et al. (2012) showed that from 2004 to 2008, the FWC increased in the Beaufort Gyre and decreased in the Siberian and Central Arctic, resulting in a relatively small net basin-averaged FWC change. In this work, we investigate the inter-annual trends from 2008 to 2012 in OBP from GRACE, SSH from the state-of-the-art pan-Arctic ocean model PIOMAS -validated with tide and pressure gauges in the Arctic-, and compute the trends in StP and FWC from 2008-2012. We compare these results with the previous trends from 2005-2008 described in Morison et al. (2012). Our initial findings suggest increased salinity in the entire Arctic basin (relative to the climatological seasonal variation) from 2008-2012, compared to the preceding four years (2005-2008). We also find that the trends in OBP, SSH and StP from 2008-2012 present a different behavior during the spring-summer and fall-winter, unlike 2005-2008, in which the trends were generally consistent through all months of the year. It seems since 2009, when the Beaufort Gyre relaxed and the export of freshwater from the Canada Basin into the Canadian Archipelago and Fram Strait, via the Lincoln Sea, was anomalously large (de Steur et al., 2013), the Arctic Ocean has entered a new circulation regime. The causes of such changes in the inter-annual trends of OBP, SSH and StP -hence FWC-, associated with the changes in the shape and strength of the Arctic Oscillation (AO) and the wind patterns, as well as with the changes in sea ice conditions will be explored. References: Morison, J., R. Kwok, C. Peralta-Ferriz, M. Alkire, I. Rigor, R. Andersen, and M. Steele, Changing Arctic Ocean Freshwater Pathways Measured With ICESat and GRACE, Nature, 481, 66-70, DOI: 10.1038/nature10705, 2012. de Steur, L., et al. (2013), Hydrographic changes in the Lincoln Sea in the Arctic Ocean with focus on an upper ocean freshwater anomaly between 2007 and 2010, J. Geophys. Res. Oceans, 118, 4699-4715, doi:10.1002/jgrc.20341.

On the Direct Assimilation of Along-track Sea Surface Height Observations into a Free-surface Ocean Model Using a Weak Constraints Four Dimensional Variational (4dvar) Method

NASA Astrophysics Data System (ADS)

Ngodock, H.; Carrier, M.; Smith, S. R.; Souopgui, I.; Martin, P.; Jacobs, G. A.

2016-02-01

The representer method is adopted for solving a weak constraints 4dvar problem for the assimilation of ocean observations including along-track SSH, using a free surface ocean model. Direct 4dvar assimilation of SSH observations along the satellite tracks requires that the adjoint model be integrated with Dirac impulses on the right hand side of the adjoint equations for the surface elevation equation. The solution of this adjoint model will inevitably include surface gravity waves, and it constitutes the forcing for the tangent linear model (TLM) according to the representer method. This yields an analysis that is contaminated by gravity waves. A method for avoiding the generation of the surface gravity waves in the analysis is proposed in this study; it consists of removing the adjoint of the free surface from the right hand side (rhs) of the free surface mode in the TLM. The information from the SSH observations will still propagate to all other variables via the adjoint of the balance relationship between the barotropic and baroclinic modes, resulting in the correction to the surface elevation. Two assimilation experiments are carried out in the Gulf of Mexico: one with adjoint forcing included on the rhs of the TLM free surface equation, and the other without. Both analyses are evaluated against the assimilated SSH observations, SSH maps from Aviso and independent surface drifters, showing that the analysis that did not include adjoint forcing in the free surface is more accurate. This study shows that when a weak constraint 4dvar approach is considered for the assimilation of along-track SSH observations using a free surface model, with the aim of correcting the mesoscale circulation, an independent model error should not be assigned to the free surface.

Blue and Fin Whale Habitat Modeling from Long-Term Year-Round Passive Acoustic Data from the Southern California Bight

DTIC Science & Technology

2015-09-30

SST), sea surface height anomaly (SSH), chlorophyll a concentration (Chla), and primary productivity (PP). These data are available on similar...between the high and low area, and in areas with low abundance, chlorophyll a concentration was also a significant explanatory variable. For fin

Eddy heat flux across the Antarctic Circumpolar Current estimated from sea surface height standard deviation

NASA Astrophysics Data System (ADS)

Foppert, Annie; Donohue, Kathleen A.; Watts, D. Randolph; Tracey, Karen L.

2017-08-01

Eddy heat flux (EHF) is a predominant mechanism for heat transport across the zonally unbounded mean flow of the Antarctic Circumpolar Current (ACC). Observations of dynamically relevant, divergent, 4 year mean EHF in Drake Passage from the cDrake project, as well as previous studies of atmospheric and oceanic storm tracks, motivates the use of sea surface height (SSH) standard deviation, H*, as a proxy for depth-integrated, downgradient, time-mean EHF (>[EHF>¯>]) in the ACC. Statistics from the Southern Ocean State Estimate corroborate this choice and validate throughout the ACC the spatial agreement between H* and >[EHF>¯>] seen locally in Drake Passage. Eight regions of elevated >[EHF>¯>] are identified from nearly 23.5 years of satellite altimetry data. Elevated cross-front exchange usually does not span the full latitudinal width of the ACC in each region, implying a hand-off of heat between ACC fronts and frontal zones as they encounter the different >[EHF>¯>] hot spots along their circumpolar path. Integrated along circumpolar streamlines, defined by mean SSH contours, there is a convergence of ∮>[EHF>¯>] in the ACC: 1.06 PW enters from the north and 0.02 PW exits to the south. Temporal trends in low-frequency [EHF] are calculated in a running-mean sense using H* from overlapping 4 year subsets of SSH. Significant increases in downgradient [EHF] magnitude have occurred since 1993 at Kerguelen Plateau, Southeast Indian Ridge, and the Brazil-Malvinas Confluence, whereas the other five >[EHF>¯>] hot spots have insignificant trends of varying sign.

Mapping coastal sea level at high resolution with radar interferometry: the SWOT Mission

NASA Astrophysics Data System (ADS)

Fu, L. L.; Chao, Y.; Laignel, B.; Turki, I., Sr.

2017-12-01

The spatial resolution of the present constellation of radar altimeters in mapping two-dimensional sea surface height (SSH) variability is approaching 100 km (in wavelength). At scales shorter than 100 km, the eddies and fronts are responsible for the stirring and mixing of the ocean, especially important in the various coastal processes. A mission currently in development will make high-resolution measurement of the height of water over the ocean as well as on land. It is called Surface Water and Ocean Topography (SWOT), which is a joint mission of US NASA and French CNES, with contributions from Canada and UK. SWOT will carry a pair of interferometry radars and make 2-dimensional SSH measurements over a swath of 120 km with a nadir gap of 20 km in a 21-day repeat orbit. The synthetic aperture radar of SWOT will make SSH measurement at extremely high resolution of 10-70 m. SWOT will also carry a nadir looking conventional altimeter and make 1-dimensional SSH measurements along the nadir gap. The temporal sampling varies from 2 repeats per 21 days at the equator to more than 4 repeats at mid latitudes and more than 6 at high latitudes. This new mission will allow a continuum of fine-scale observations from the open ocean to the coasts, estuaries and rivers, allowing us to investigate a number of scientific and technical questions in the coastal and estuarine domain to assess the coastal impacts of regional sea level change, such as the interaction of sea level with river flow, estuary inundation, storm surge, coastal wetlands, salt water intrusion, etc. As examples, we will illustrate the potential impact of SWOT to the studies of the San Francisco Bay Delta, and the Seine River estuary, etc. Preliminary results suggest that the SWOT Mission will provide fundamental data to map the spatial variability of water surface elevations under different hydrodynamic conditions and at different scales (local, regional and global) to improve our knowledge of the complex physical processes in the coastal and estuarine systems in response to global sea level changes.

Can We Infer Ocean Dynamics from Altimeter Wavenumber Spectra?

NASA Technical Reports Server (NTRS)

Richman, James; Shriver, Jay; Arbic, Brian

2012-01-01

The wavenumber spectra of sea surface height (SSH) and kinetic energy (KE) have been used to infer the dynamics of the ocean. When quasi-geostrophic dynamics (QG) or surface quasi-geostrophic (SQG) turbulence dominate and an inertial subrange exists, a steep SSH wavenumber spectrum is expected with k-5 for QG turbulence and a flatter k-11/3 for SQG turbulence. However, inspection of the spectral slopes in the mesoscale band of 70 to 250 km shows that the altimeter wavenumber slopes typically are much flatter than the QG or SQG predictions over most of the ocean. Comparison of the altimeter wavenumber spectra with the spectra estimated from the output of an eddy resolving global ocean circulation model (the Hybrid Coordinate Ocean Model, HYCOM, at 1/25 resolution), which is forced by high frequency winds and includes the astronomical forcing of the sun and the moon, suggests that the flatter slopes of the altimeter may arise from three possible sources, the presence of internal waves, the lack of an inertial subrange in the 70 to 250 km band and noise or submesoscales at small scales. When the wavenumber spectra of SSH and KE are estimated near the internal tide generating regions, the resulting spectra are much flatter than the expectations of QG or SQG theory. If the height and velocity variability are separated into low frequency (periods greater than 2 days) and high frequency (periods less than a day), then a different pattern emerges with a relatively flat wavenumber spectrum at high frequency and a steeper wavenumber spectrum at low frequency. The stationary internal tides can be removed from the altimeter spectrum, which steepens the spectral slopes in the energetic internal wave regions. Away from generating regions where the internal waves

Intraseasonal Variability of the Equatorial Indian Ocean Observed from Sea Surface Height, Wind, and Temperature Data

NASA Technical Reports Server (NTRS)

Fu, Lee-Lueng

2007-01-01

The forcing of the equatorial Indian Ocean by the highly periodic monsoon wind cycle creates many interesting intraseasonal variabilities. The frequency spectrum of the wind stress observations from the European Remote Sensing Satellite scatterometers reveals peaks at the seasonal cycle and its higher harmonics at 180, 120, 90, and 75 days. The observations of sea surface height (SSH) from the Jason and Ocean Topography Experiment (TOPEX)/Poseidon radar altimeters are analyzed to study the ocean's response. The focus of the study is on the intraseasonal periods shorter than the annual period. The semiannual SSH variability is characterized by a basin mode involving Rossby waves and Kelvin waves traveling back and forth in the equatorial Indian Ocean between 10(deg)S and 10(deg)N. However, the interference of these waves with each other masks the appearance of individual Kelvin and Rossby waves, leading to a nodal point (amphidrome) of phase propagation on the equator at the center of the basin. The characteristics of the mode correspond to a resonance of the basin according to theoretical models. The theory also calls for similar modes at 90 and 60 days.

High-frequency fluctuations in Denmark Strait transport

NASA Astrophysics Data System (ADS)

Haine, T. W. N.

2010-07-01

Denmark Strait ocean current transport exhibits quasi-regular fluctuations immediately south of the sill with periods of 2-4 days. The transport variability is similar to the mean transport itself. Using a circulation model we explore prospects to monitor the fluctuations. The model has realistic transport and shows water leaving Denmark Strait in equivalent-barotropic cyclones that are nearly geostrophic and correlate with sea-surface height (SSH). Existing satellite altimeter observations of SSH have adequate space/time sampling to reconstruct the transport fluctuations using a regression developed from the model results, but measurement error overwhelms the signal. From the model results, the pending Surface Water and Ocean Topography (SWOT) wide-swath altimeter appears accurate enough, and with good-enough coverage, to allow the transport fluctuations to be reconstructed. Bottom pressure recorders at the exit of the Denmark Strait can also reproduce the transport variability.

Constraining a Coastal Ocean Model by Surface Observations Using an Ensemble Kalman Filter

NASA Astrophysics Data System (ADS)

De Mey, P. J.; Ayoub, N. K.

2016-02-01

We explore the impact of assimilating sea surface temperature (SST) and sea surface height (SSH) observations in the Bay of Biscay (North-East Atlantic). The study is conducted in the SYMPHONIE coastal circulation model (Marsaleix et al., 2009) on a 3kmx3km grid, with 43 sigma levels. Ensembles are generated by perturbing the wind forcing to analyze the model error subspace spanned by its response to wind forcing uncertainties. The assimilation method is a 4D Ensemble Kalman Filter algorithm with localization. We use the SDAP code developed in the team (https://sourceforge.net/projects/sequoia-dap/). In a first step before the assimilation of real observations, we set up an Ensemble twin experiment protocol where a nature run as well as noisy pseudo-observations of SST and SSH are generated from an Ensemble member (later discarded from the assimilative Ensemble). Our objectives are to assess (1) the adequacy of the choice of error source and perturbation strategy and (2) how effective the surface observational constraint is at constraining the surface and subsurface fields. We first illustrate characteristics of the error subspace generated by the perturbation strategy. We then show that, while the EnKF solves a single seamless problem regardless of the region within our domain, the nature and effectiveness of the data constraint over the shelf differ from those over the abyssal plain.

Evaluation of Oceanic Surface Observation for Reproducing the Upper Ocean Structure in ECHAM5/MPI-OM

NASA Astrophysics Data System (ADS)

Luo, Hao; Zheng, Fei; Zhu, Jiang

2017-12-01

Better constraints of initial conditions from data assimilation are necessary for climate simulations and predictions, and they are particularly important for the ocean due to its long climate memory; as such, ocean data assimilation (ODA) is regarded as an effective tool for seasonal to decadal predictions. In this work, an ODA system is established for a coupled climate model (ECHAM5/MPI-OM), which can assimilate all available oceanic observations using an ensemble optimal interpolation approach. To validate and isolate the performance of different surface observations in reproducing air-sea climate variations in the model, a set of observing system simulation experiments (OSSEs) was performed over 150 model years. Generally, assimilating sea surface temperature, sea surface salinity, and sea surface height (SSH) can reasonably reproduce the climate variability and vertical structure of the upper ocean, and assimilating SSH achieves the best results compared to the true states. For the El Niño-Southern Oscillation (ENSO), assimilating different surface observations captures true aspects of ENSO well, but assimilating SSH can further enhance the accuracy of ENSO-related feedback processes in the coupled model, leading to a more reasonable ENSO evolution and air-sea interaction over the tropical Pacific. For ocean heat content, there are still limitations in reproducing the long time-scale variability in the North Atlantic, even if SSH has been taken into consideration. These results demonstrate the effectiveness of assimilating surface observations in capturing the interannual signal and, to some extent, the decadal signal but still highlight the necessity of assimilating profile data to reproduce specific decadal variability.

The Global Mode-1 S2 Internal Tide

NASA Astrophysics Data System (ADS)

Zhao, Zhongxiang

2017-11-01

The global mode-1 S2 internal tide is observed using sea surface height (SSH) measurements from four satellite altimeters: TOPEX/Poseidon, Jason-1, Jason-2, and Geosat Follow-On. Plane wave analysis is employed to extract three mode-1 S2 internal tidal waves in any given 250 km by 250 km window, which are temporally coherent over a 20 year period from 1992 to 2012. Depth-integrated energy and flux of the S2 internal tide are calculated from the SSH amplitude and a conversion function built from climatological hydrographic profiles in the World Ocean Atlas 2013. The results show that the S2 and M2 internal tides have similar spatial patterns. Both S2 and M2 internal tides originate at major topographic features and propagate over long distances. The S2 internal tidal beams are generally shorter, likely because the relatively weaker S2 internal tide is easily overwhelmed by nontidal noise. The northbound S2 and M2 internal tides from the Hawaiian Ridge are observed to travel over 3500 km across the Northeast Pacific. The globally integrated energy of the mode-1 S2 internal tide is 7.8 PJ (1 PJ = 1015 J), about 20% that of M2 (36.4 PJ). The histogram of S2 to M2 SSH ratios peaks at 0.4, consistent with the square root of their energy ratio. In terms of SSH, S2 is greater than M2 in ≈10% of the global ocean and ≥50% of M2 in about half of the global ocean.

Do Assimilated Drifter Velocities Improve Lagrangian Predictability in an Operational Ocean Model?

DTIC Science & Technology

2015-05-01

extended Kalman filter . Molcard et al. (2005) used a statistical method to cor- relate model and drifter velocities. Taillandier et al. (2006) describe the... temperature and salinity observations. Trajectory angular differ- ences are also reduced. 1. Introduction The importance of Lagrangian forecasts was seen... Temperature , salinity, and sea surface height (SSH, measured along-track by satellite altimeters) observa- tions are typically assimilated in

Wind Forcing of the Pacific Ocean Using Scatterometer Wind Data

NASA Technical Reports Server (NTRS)

Kelly, Kathryn A.

1999-01-01

The long-term objective of this research was an understanding of the wind-forced ocean circulation, particularly for the Pacific Ocean. To determine the ocean's response to the winds, we first needed to generate accurate maps of wind stress. For the ocean's response to wind stress we examined the sea surface height (SSH) both from altimeters and from numerical models for the Pacific Ocean.

Simulation and assimilation of satellite altimeter data at the oceanic mesoscale

NASA Technical Reports Server (NTRS)

Demay, P.; Robinson, A. R.

1984-01-01

An improved "objective analysis' technique is used along with an altimeter signal statistical model, an altimeter noise statistical model, an orbital model, and synoptic surface current maps in the POLYMODE-SDE area, to evaluate the performance of various observational strategies in catching the mesoscale variability at mid-latitudes. In particular, simulated repetitive nominal orbits of ERS-1, TOPEX, and SPOT/POSEIDON are examined. Results show the critical importance of existence of a subcycle, scanning in either direction. Moreover, long repeat cycles ( 20 days) and short cross-track distances ( 300 km) seem preferable, since they match mesoscale statistics. Another goal of the study is to prepare and discuss sea-surface height (SSH) assimilation in quasigeostrophic models. Restored SSH maps are shown to meet that purpose, if an efficient extrapolation method or deep in-situ data (floats) are used on the vertical to start and update the model.

Spin-Down of the North Atlantic Subpolar Circulation

NASA Technical Reports Server (NTRS)

Hakkinen, S.; Rhines, P. B.

2004-01-01

Dramatic changes have occurred in the mid-to-high-latitude North Atlantic Ocean as evidenced by TOPEX/Poseidon observations of sea surface height (SSH) in the subpolar gyre and the Gulf Stream. Analysis of altimeter data shows that subpolar SSH has increased during the 1990s and the geostrophic velocity derived from altimeter data shows a decline in the gyre circulation. Direct current-meter observations in the boundary current of the Labrador Sea support the trend in the 199Os, and, together with hydrographic data show that in the mid-late 1990s the trend extends deep in the water column. We find that buoyancy forcing over the northern North Atlantic has a dynamic effect consistent with the altimeter data and hydrographic observations: a weak thermohaline forcing and the subsequent decay of the domed structure of the subpolar isopycnals would give rise to the observed anticyclonic circulation trend.

Identifying Environmental Risk Factors of Cholera in a Coastal Area with Geospatial Technologies

PubMed Central

Xu, Min; Cao, Chunxiang; Wang, Duochun; Kan, Biao

2014-01-01

Satellites contribute significantly to environmental quality and public health. Environmental factors are important indicators for the prediction of disease outbreaks. This study reveals the environmental factors associated with cholera in Zhejiang, a coastal province of China, using both Remote Sensing (RS) and Geographic information System (GIS). The analysis validated the correlation between the indirect satellite measurements of sea surface temperature (SST), sea surface height (SSH) and ocean chlorophyll concentration (OCC) and the local cholera magnitude based on a ten-year monthly data from the year 1999 to 2008. Cholera magnitude has been strongly affected by the concurrent variables of SST and SSH, while OCC has a one-month time lag effect. A cholera prediction model has been established based on the sea environmental factors. The results of hot spot analysis showed the local cholera magnitude in counties significantly associated with the estuaries and rivers. PMID:25551518

Identifying environmental risk factors of cholera in a coastal area with geospatial technologies.

PubMed

Xu, Min; Cao, Chunxiang; Wang, Duochun; Kan, Biao

2014-12-29

Satellites contribute significantly to environmental quality and public health. Environmental factors are important indicators for the prediction of disease outbreaks. This study reveals the environmental factors associated with cholera in Zhejiang, a coastal province of China, using both Remote Sensing (RS) and Geographic information System (GIS). The analysis validated the correlation between the indirect satellite measurements of sea surface temperature (SST), sea surface height (SSH) and ocean chlorophyll concentration (OCC) and the local cholera magnitude based on a ten-year monthly data from the year 1999 to 2008. Cholera magnitude has been strongly affected by the concurrent variables of SST and SSH, while OCC has a one-month time lag effect. A cholera prediction model has been established based on the sea environmental factors. The results of hot spot analysis showed the local cholera magnitude in counties significantly associated with the estuaries and rivers.

Tracking the Polar Front south of New Zealand using penguin dive data

NASA Astrophysics Data System (ADS)

Sokolov, Serguei; Rintoul, Stephen R.; Wienecke, Barbara

2006-04-01

Nearly 36,000 vertical temperature profiles collected by 15 king penguins are used to map oceanographic fronts south of New Zealand. There is good correspondence between Antarctic Circumpolar Current (ACC) front locations derived from temperatures sampled in the upper 150 m along the penguin tracks and front positions inferred using maps of sea surface height (SSH). Mesoscale features detected in the SSH maps from this eddy-rich region are also reproduced in the individual temperature sections based on dive data. The foraging strategy of Macquarie Island king penguins appears to be influenced strongly by oceanographic structure: almost all the penguin dives are confined to the region close to and between the northern and southern branches of the Polar Front. Surface chlorophyll distributions also reflect the influence of the ACC fronts, with the northern branch of the Polar Front marking a boundary between low surface chlorophyll to the north and elevated values to the south.

Regional sea level variability in a high-resolution global coupled climate model

NASA Astrophysics Data System (ADS)

Palko, D.; Kirtman, B. P.

2016-12-01

The prediction of trends at regional scales is essential in order to adapt to and prepare for the effects of climate change. However, GCMs are unable to make reliable predictions at regional scales. The prediction of local sea level trends is particularly critical. The main goal of this research is to utilize high-resolution (HR) (0.1° resolution in the ocean) coupled model runs of CCSM4 to analyze regional sea surface height (SSH) trends. Unlike typical, lower resolution (1.0°) GCM runs these HR runs resolve features in the ocean, like the Gulf Stream, which may have a large effect on regional sea level. We characterize the variability of regional SSH along the Atlantic coast of the US using tide gauge observations along with fixed radiative forcing runs of CCSM4 and HR interactive ensemble runs. The interactive ensemble couples an ensemble mean atmosphere with a single ocean realization. This coupling results in a 30% decrease in the strength of the Atlantic meridional overturning circulation; therefore, the HR interactive ensemble is analogous to a HR hosing experiment. By characterizing the variability in these high-resolution GCM runs and observations we seek to understand what processes influence coastal SSH along the Eastern Coast of the United States and better predict future SLR.

Internal gravity wave contributions to global sea surface variability

NASA Astrophysics Data System (ADS)

Savage, A.; Arbic, B. K.; Richman, J. G.; Shriver, J. F.; Buijsman, M. C.; Zamudio, L.; Wallcraft, A. J.; Sharma, H.

2016-02-01

High-resolution (1/12th and 1/25th degree) 41-layer simulations of the HYbrid Coordinate Ocean Model (HYCOM), forced by both atmospheric fields and the astronomical tidal potential, are used to construct global maps of sea-surface height (SSH). The HYCOM output has been separated into steric, non-steric, and total sea-surface height and the maps display variance in subtidal, tidal, and supertidal bands. Two of the global maps are of particular interest in planning for the upcoming Surface Water and Ocean Topography (SWOT) wide-swath satellite altimeter mission; (1) a map of the nonstationary tidal signal (estimated after removing the stationary tidal signal via harmonic analysis), and (2) a map of the steric supertidal contributions, which are dominated by the internal gravity wave continuum. Both of these maps display signals of order 1 cm2, the target accuracy for the SWOT mission. Therefore, both non-stationary internal tides and non-tidal internal gravity waves are likely to be important sources of "noise" that must be accurately removed before examination of lower-frequency phenomena can take place.

Improved gravity anomaly fields from retracked multimission satellite radar altimetry observations over the Persian Gulf and the Caspian Sea

NASA Astrophysics Data System (ADS)

Khaki, M.; Forootan, E.; Sharifi, M. A.; Awange, J.; Kuhn, M.

2015-09-01

Satellite radar altimetry observations are used to derive short wavelength gravity anomaly fields over the Persian Gulf and the Caspian Sea, where in situ and ship-borne gravity measurements have limited spatial coverage. In this study the retracking algorithm `Extrema Retracking' (ExtR) was employed to improve sea surface height (SSH) measurements that are highly biased in the study regions due to land contaminations in the footprints of the satellite altimetry observations. ExtR was applied to the waveforms sampled by the five satellite radar altimetry missions: TOPEX/POSEIDON, JASON-1, JASON-2, GFO and ERS-1. Along-track slopes have been estimated from the improved SSH measurements and used in an iterative process to estimate deflections of the vertical, and subsequently, the desired gravity anomalies. The main steps of the gravity anomaly computations involve estimating improved SSH using the ExtR technique, computing deflections of the vertical from interpolated SSHs on a regular grid using a biharmonic spline interpolation and finally estimating gridded gravity anomalies. A remove-compute-restore algorithm, based on the fast Fourier transform, has been applied to convert deflections of the vertical into gravity anomalies. Finally, spline interpolation has been used to estimate regular gravity anomaly grids over the two study regions. Results were evaluated by comparing the estimated altimetry-derived gravity anomalies (with and without implementing the ExtR algorithm) with ship-borne free air gravity anomaly observations, and free air gravity anomalies from the Earth Gravitational Model 2008 (EGM2008). The comparison indicates a range of 3-5 mGal in the residuals, which were computed by taking the differences between the retracked altimetry-derived gravity anomaly and the ship-borne data. The comparison of retracked data with ship-borne data indicates a range in the root-mean-square-error (RMSE) between approximately 1.8 and 4.4 mGal and a bias between 0.4062 and 2.1413 mGal over different areas. Also a maximum RMSE of 4.4069 mGal, with a mean value of 0.7615 mGal was obtained in the residuals. An average improvement of 5.2746 mGal in the RMSE of the altimetry-derived gravity anomalies corresponding to 89.9 per cent was obtained after applying the ExtR post-processing.

Using altimetry to help explain patchy changes in hydrographic carbon measurements

NASA Astrophysics Data System (ADS)

Rodgers, Keith B.; Key, Robert M.; Gnanadesikan, Anand; Sarmiento, Jorge L.; Aumont, Olivier; Bopp, Laurent; Doney, Scott C.; Dunne, John P.; Glover, David M.; Ishida, Akio; Ishii, Masao; Jacobson, Andrew R.; Lo Monaco, Claire; Maier-Reimer, Ernst; Mercier, Herlé; Metzl, Nicolas; PéRez, Fiz F.; Rios, Aida F.; Wanninkhof, Rik; Wetzel, Patrick; Winn, Christopher D.; Yamanaka, Yasuhiro

2009-09-01

Here we use observations and ocean models to identify mechanisms driving large seasonal to interannual variations in dissolved inorganic carbon (DIC) and dissolved oxygen (O2) in the upper ocean. We begin with observations linking variations in upper ocean DIC and O2 inventories with changes in the physical state of the ocean. Models are subsequently used to address the extent to which the relationships derived from short-timescale (6 months to 2 years) repeat measurements are representative of variations over larger spatial and temporal scales. The main new result is that convergence and divergence (column stretching) attributed to baroclinic Rossby waves can make a first-order contribution to DIC and O2 variability in the upper ocean. This results in a close correspondence between natural variations in DIC and O2 column inventory variations and sea surface height (SSH) variations over much of the ocean. Oceanic Rossby wave activity is an intrinsic part of the natural variability in the climate system and is elevated even in the absence of significant interannual variability in climate mode indices. The close correspondence between SSH and both DIC and O2 column inventories for many regions suggests that SSH changes (inferred from satellite altimetry) may prove useful in reducing uncertainty in separating natural and anthropogenic DIC signals (using measurements from Climate Variability and Predictability's CO2/Repeat Hydrography program).

Ocean Bottom Pressure Variation Associated with the Large Meander of the Kuroshio South of Japan in 2004-2005

NASA Astrophysics Data System (ADS)

Nagano, A.; Hasegawa, T.; Matsumoto, H.; Ariyoshi, K.

2016-02-01

The Kuroshio, the western boundary current of the North Pacific subtropical gyre, takes a stable meandering path off the southern coast of Japan, called the large meander (LM), on interannual to decadal timescales. The LM of the Kuroshio formed in July 2004 associated with the intensified anticyclonic recirculation gyre south of the Kuroshio, and gradually decayed in the latter half of 2005. The variations of the Kuroshio and the southern recirculating currents may be related to deep currents, which are expected to be associated with bottom pressure (BP) variation. In order to examine the variation of BP associated with the variations of the sea surface currents, we analyzed data of eleven pressure sensors equipped to inverted echo sounders deployed from July 2004 to October 2006. An abrupt enhancement of BP is found on the continental slope off Shikoku, lagging a few months behind an elevation of sea surface height (SSH) due to the onshore shift of the recirculation gyre associated with the LM formation. Subsequently, BP beneath the recirculation gyre dwindles, leading the gradual depression of SSH due to the decay of the LM. The relationship between BP and SSH may suggest that the occurrence and decay of the LM depend on the extension of the recirculation gyre current down to the ocean bottom.

Mapping the nonstationary internal tide with satellite altimetry

NASA Astrophysics Data System (ADS)

Zaron, Edward D.

2017-01-01

Temporal variability of the internal tide has been inferred from the 23 year long combined records of the TOPEX/Poseidon, Jason-1, and Jason-2 satellite altimeters by combining harmonic analysis with an analysis of along-track wavenumber spectra of sea-surface height (SSH). Conventional harmonic analysis is first applied to estimate and remove the stationary components of the tide at each point along the reference ground tracks. The wavenumber spectrum of the residual SSH is then computed, and the variance in a neighborhood around the wavenumber of the mode-1 baroclinic M2 tide is interpreted as the sum of noise, broadband nontidal processes, and the nonstationary tide. At many sites a bump in the spectrum associated with the internal tide is noted, and an empirical model for the noise and nontidal processes is used to estimate the nonstationary semidiurnal tidal variance. The results indicate a spatially inhomogeneous pattern of tidal variability. Nonstationary tides are larger than stationary tides throughout much of the equatorial Pacific and Indian Oceans.

Detection of Rossby Waves in Multi-Parameters in Multi-Mission Satellite Observations and HYCOM Simulations in the Indian Ocean

NASA Technical Reports Server (NTRS)

Subrahmanyam, Bulusu; Heffner, David M.; Cromwell, David; Shriver, Jay F.

2009-01-01

Rossby waves are difficult to detect with in situ methods. However, as we show in this paper, they can be clearly identified in multi-parameters in multi-mission satellite observations of sea surface height (SSH), sea surface temperature (SST) and ocean color observations of chlorophyll-a (chl-a), as well as 1/12-deg global HYbrid Coordinate Ocean Model (HYCOM) simulations of SSH, SST and sea surface salinity (SSS) in the Indian Ocean. While the surface structure of Rossby waves can be elucidated from comparisons of the signal in different sea surface parameters, models are needed to gain direct information about how these waves affect the ocean at depth. The first three baroclinic modes of the Rossby waves are inferred from the Fast Fourier Transform (FFT), and two-dimensional Radon Transform (2D RT). At many latitudes the first and second baroclinic mode Rossby wave phase speeds from satellite observations and model parameters are identified.

Estimation of Interbasin Transport Using Ocean Bottom Pressure: Theory and Model for Asian Marginal Seas

NASA Technical Reports Server (NTRS)

Song, Y. Tony

2006-01-01

The Asian Marginal Seas are interconnected by a number of narrow straits, such as the Makassar Strait connecting the Pacific Ocean with the Indian Ocean, the Luzon Strait connecting the South China Sea with the Pacific Ocean, and the Korea/Tsushima Strait connecting the East China Sea with the Japan/East Sea. Here we propose a method, the combination of the "geostrophic control" formula of Garrett and Toulany (1982) and the "hydraulic control" theory of Whitehead et al. (1974), allowing the use of satellite-observed sea-surface-height (SSH) and ocean-bottom-pressure (OBP) data for estimating interbasin transport. The new method also allows separating the interbasin transport into surface and bottom fluxes that play an important role in maintaining the mass balance of the regional oceans. Comparison with model results demonstrates that the combined method can estimate the seasonal variability of the strait transports and is significantly better than the method of using SSH or OBP alone.

Safety surrogate histograms (SSH): A novel real-time safety assessment of dilemma zone related conflicts at signalized intersections.

PubMed

Ghanipoor Machiani, Sahar; Abbas, Montasir

2016-11-01

Drivers' indecisiveness in dilemma zones (DZ) could result in crash-prone situations at signalized intersections. DZ is to the area ahead of an intersection in which drivers encounter a dilemma regarding whether to stop or proceed through the intersection when the signal turns yellow. An improper decision to stop by the leading driver, combined with the following driver deciding to go, can result in a rear-end collision, unless the following driver recognizes a collision is imminent and adjusts his or her behavior at or shortly after the onset of yellow. Considering the significance of DZ-related crashes, a comprehensive safety measure is needed to characterize the level of safety at signalized intersections. In this study, a novel safety surrogate measure was developed utilizing real-time radar field data. This new measure, called safety surrogate histogram (SSH), captures the degree and frequency of DZ-related conflicts at each intersection approach. SSH includes detailed information regarding the possibility of crashes, because it is calculated based on the vehicles conflicts. An example illustrating the application of the new methodology at two study sites in Virginia is presented and discussed, and a comparison is provided between SSH and other DZ-related safety surrogate measures mentioned in the literature. The results of the study reveal the efficacy of the SSH as complementary to existing surrogate measures. Copyright © 2015 Elsevier Ltd. All rights reserved.

A Study of the Southern Ocean: Mean State, Eddy Genesis & Demise, and Energy Pathways

NASA Astrophysics Data System (ADS)

Zajaczkovski, Uriel

The Southern Ocean (SO), due to its deep penetrating jets and eddies, is well-suited for studies that combine surface and sub-surface data. This thesis explores the use of Argo profiles and sea surface height ( SSH) altimeter data from a statistical point of view. A linear regression analysis of SSH and hydrographic data reveals that the altimeter can explain, on average, about 35% of the variance contained in the hydrographic fields and more than 95% if estimated locally. Correlation maxima are found at mid-depth, where dynamics are dominated by geostrophy. Near the surface, diabatic processes are significant, and the variance explained by the altimeter is lower. Since SSH variability is associated with eddies, the regression of SSH with temperature (T) and salinity (S) shows the relative importance of S vs T in controlling density anomalies. The AAIW salinity minimum separates two distinct regions; above the minimum density changes are dominated by T, while below the minimum S dominates over T. The regression analysis provides a method to remove eddy variability, effectively reducing the variance of the hydrographic fields. We use satellite altimetry and output from an assimilating numerical model to show that the SO has two distinct eddy motion regimes. North and south of the Antarctic Circumpolar Current (ACC), eddies propagate westward with a mean meridional drift directed poleward for cyclonic eddies (CEs) and equatorward for anticyclonic eddies (AEs). Eddies formed within the boundaries of the ACC have an effective eastward propagation with respect to the mean deep ACC flow, and the mean meridional drift is reversed, with warm-core AEs propagating poleward and cold-core CEs propagating equatorward. This circulation pattern drives downgradient eddy heat transport, which could potentially transport a significant fraction (24 to 60 x 1013 W) of the net poleward ACC eddy heat flux. We show that the generation of relatively large amplitude eddies is not a ubiquitous feature of the SO but rather a phenomenon that is constrained to five isolated, well-defined "hotspots". These hotspots are located downstream of major topographic features, with their boundaries closely following f/H contours. Eddies generated in these locations show no evidence of a bias in polarity and decay within the boundaries of the generation area. Eddies tend to disperse along f/H contours rather than following lines of latitude. We found enhanced values of both buoyancy (BP) and shear production (SP) inside the hotspots, with BP one order of magnitude larger than SP. This is consistent with baroclinic instability being the main mechanism of eddy generation. The mean potential density field estimated from Argo floats shows that inside the hotspots, isopycnal slopes are steep, indicating availability of potential energy. The hotspots identified in this thesis overlap with previously identified regions of standing meanders. We provide evidence that hotspot locations can be explained by the combined effect of topography, standing meanders that enhance baroclinic instability, and availability of potential energy to generate eddies via baroclinic instabilities.

Blue and Fin Whale Habitat Modeling from Long-Term Year-Round Passive Acoustic Data from the Southern California Bight

DTIC Science & Technology

2014-09-30

be used for habitat modeling include sea surface temperature (SST), sea surface height (SSH), chlorophyll a concentration, and primary production...1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Blue and Fin Whale Habitat Modeling from Long-Term Year...predictive, year-round habitat models of the presence of calling blue and fin whales in the Southern California Bight, to facilitate Navy’s operational

Is social sciences and humanities (SSH) premedical education marginalized in the medical school admission process? A review and contextualization of the literature.

PubMed

Hall, Justin N; Woods, Nicole; Hanson, Mark D

2014-07-01

To investigate the performance outcomes of medical students with social sciences and humanities (SSH) premedical education during and beyond medical school by reviewing the literature, and to contextualize this review within today's admission milieu. From May to July 2012, the lead author searched the PubMed, MEDLINE, and PsycINFO databases, and reference lists of relevant articles, for research that compared premedical SSH education with premedical sciences education and its influence on performance during and/or after medical school. The authors extracted representative themes and relevant empirical findings. They contextualized their findings within today's admission milieu. A total of 1,548 citations were identified with 20 papers included in the review. SSH premedical education is predominately an American experience. For medical students with SSH background, equivalent academic, clinical, and research performance compared with medical students with a premedical science background is reported, yet different patterns of competencies exist. Post-medical-school equivalent or improved clinical performance is associated with an SSH background. Medical students with SSH backgrounds were more likely to select primary care or psychiatry careers. SSH major/course concentration, not SSH course counts, is important for admission decision making. The impact of today's admission milieu decreases the value of an SSH premedical education. Medical students with SSH premedical education perform on par with peers yet may possess different patterns of competencies, research, and career interests. However, SSH premedical education likely will not attain a significant role in medical school admission processes.

The seasonal march of the equatorial Pacific upper-ocean and its El Niño variability

NASA Astrophysics Data System (ADS)

Gasparin, Florent; Roemmich, Dean

2017-08-01

Based on two modern data sets, the climatological seasonal march of the upper-ocean is examined in the equatorial Pacific for the period 2004-2014, because of its large contribution to the total variance, its relationship to El Niño, and its unique equatorial wave phenomena. Argo provides a broadscale view of the equatorial Pacific upper-ocean based on subsurface temperature and salinity measurements for the period 2004-2015, and satellite altimetry provides synoptic observations of the sea surface height (SSH) for the period 1993-2015. Using either 11-year (1993-2003/2004-2014) time-series for averaging, the seasonal Rossby waves stands out clearly and eastward intraseasonal Kelvin wave propagation is strong enough in individual years to leave residuals in the 11-year averages, particularly but not exclusively, during El Niño onset years. The agreement of altimetric SSH minus Argo steric height (SH) residuals with GRACE ocean mass estimates confirms the scale-matching of in situ variability with that of satellite observations. Surface layer and subsurface thermohaline variations are both important in determining SH and SSH basin-wide patterns. The SH/SSH October-November maximum in the central-eastern Pacific is primarily due to a downward deflection of the thermocline (∼20 m), causing a warm subsurface anomaly (>1 °C), in response to the phasing of downwelling intraseasonal Kelvin and seasonal Rossby waves. Compared with the climatology, the stronger October-November maximum in the 2004-2014 El Niño composites is due to higher intraseasonal oscillations and interannual variability. Associated with these equatorial wave patterns along the thermocline, the western warm/fresh pool waters move zonally at interannual timescales through zonal wind stress and pressure gradient fluctuations, and cause substantial fresh (up to 0.6 psu) and warm (∼1 °C higher than the climatology) anomalies in the western-central Pacific surface-layer during the El Niño onset year, and of the opposite sign during the termination year. These El Niño-related patterns are then analyzed focusing on the case of the onset of the strong 2015/2016 episode, and are seen to be around two times larger than that in the 2004-2014 El Niño composites. The present work exploits the capabilities of Argo and altimetry to update and improve the description of the physical state of the equatorial Pacific upper-ocean, and provides a benchmark for assessing the accuracy of models in representing equatorial Pacific variability.

Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing

PubMed Central

Dallas, Anne; Ilves, Heini; Ge, Qing; Kumar, Pavan; Shorenstein, Joshua; Kazakov, Sergei A.; Cuellar, Trinna L.; McManus, Michael T.; Behlke, Mark A.; Johnston, Brian H.

2012-01-01

Small hairpin RNAs (shRNAs) having duplex lengths of 25–29 bp are normally processed by Dicer into short interfering RNAs (siRNAs) before incorporation into the RNA-induced silencing complex (RISC). However, shRNAs of ≤19 bp [short shRNAs (sshRNAs)] are too short for Dicer to excise their loops, raising questions about their mechanism of action. sshRNAs are designated as L-type or R-type according to whether the loop is positioned 3′ or 5′ to the guide sequence, respectively. Using nucleotide modifications that inhibit RNA cleavage, we show that R- but not L-sshRNAs require loop cleavage for optimum activity. Passenger-arm slicing was found to be important for optimal functioning of L-sshRNAs but much less important for R-sshRNAs that have a cleavable loop. R-sshRNAs could be immunoprecipitated by antibodies to Argonaute-1 (Ago1); complexes with Ago1 contained both intact and loop-cleaved sshRNAs. In contrast, L-sshRNAs were immunoprecipitated with either Ago1 or Ago2 and were predominantly sliced in the passenger arm of the hairpin. However, ‘pre-sliced’ L-sshRNAs were inactive. We conclude that active L-sshRNAs depend on slicing of the passenger arm to facilitate opening of the duplex, whereas R-sshRNAs primarily act via loop cleavage to generate a 5′-phosphate at the 5′-end of the guide strand. PMID:22810205

Seasonal variability of the Red Sea, from satellite gravity, radar altimetry, and in situ observations

NASA Astrophysics Data System (ADS)

Wahr, John; Smeed, David A.; Leuliette, Eric; Swenson, Sean

2014-08-01

Seasonal variations of sea surface height (SSH) and mass within the Red Sea are caused mostly by exchange of heat with the atmosphere and by flow through the strait opening into the Gulf of Aden to the south. That flow involves a net mass transfer into the Red Sea during fall and out during spring, though in summer there is an influx of cool water at intermediate depths. Thus, summer water in the south is warmer near the surface due to higher air temperatures, but cooler at intermediate depths. Summer water in the north experiences warming by air-sea exchange only. The temperature affects water density, which impacts SSH but has no effect on mass. We study this seasonal cycle by combining GRACE mass estimates, altimeter SSH measurements, and steric contributions derived from the World Ocean Atlas temperature climatology. Among our conclusions are: mass contributions are much larger than steric contributions; the mass is largest in winter, consistent with winds pushing water into the Red Sea in fall and out during spring; the steric signal is largest in summer, consistent with surface warming; and the cool, intermediate-depth water flowing into the Red Sea in spring has little impact on the steric signal, because contributions from the lowered temperature are offset by effects of decreased salinity. The results suggest that the combined use of altimeter and GRACE measurements can provide a useful alternative to in situ data for monitoring the steric signal.

The internal gravity wave spectrum in two high-resolution global ocean models

NASA Astrophysics Data System (ADS)

Arbic, B. K.; Ansong, J. K.; Buijsman, M. C.; Kunze, E. L.; Menemenlis, D.; Müller, M.; Richman, J. G.; Savage, A.; Shriver, J. F.; Wallcraft, A. J.; Zamudio, L.

2016-02-01

We examine the internal gravity wave (IGW) spectrum in two sets of high-resolution global ocean simulations that are forced concurrently by atmospheric fields and the astronomical tidal potential. We analyze global 1/12th and 1/25th degree HYCOM simulations, and global 1/12th, 1/24th, and 1/48th degree simulations of the MITgcm. We are motivated by the central role that IGWs play in ocean mixing, by operational considerations of the US Navy, which runs HYCOM as an ocean forecast model, and by the impact of the IGW continuum on the sea surface height (SSH) measurements that will be taken by the planned NASA/CNES SWOT wide-swath altimeter mission. We (1) compute the IGW horizontal wavenumber-frequency spectrum of kinetic energy, and interpret the results with linear dispersion relations computed from the IGW Sturm-Liouville problem, (2) compute and similarly interpret nonlinear spectral kinetic energy transfers in the IGW band, (3) compute and similarly interpret IGW contributions to SSH variance, (4) perform comparisons of modeled IGW kinetic energy frequency spectra with moored current meter observations, and (5) perform comparisons of modeled IGW kinetic energy vertical wavenumber-frequency spectra with moored observations. This presentation builds upon our work in Muller et al. (2015, GRL), who performed tasks (1), (2), and (4) in 1/12th and 1/25th degree HYCOM simulations, for one region of the North Pacific. New for this presentation are tasks (3) and (5), the inclusion of MITgcm solutions, and the analysis of additional ocean regions.

Evaluation of SARAL/AltiKa performance using GNSS/IMU equipped buoy in Sajafi, Imam Hassan and Kangan Ports

NASA Astrophysics Data System (ADS)

Ardalan, Alireza A.; Jazireeyan, Iraj; Abdi, Naser; Rezvani, Mohammad-Hadi

2018-03-01

Performance of SARAL/AltiKa mission has been evaluated within 2016 altimeter calibration/validation framework in Persian Gulf through three campaigns conducted in the offshore waters of Sajafi, Imam Hassan and Kangan Ports, while the altimeter overflew the passes 470, 111 and 25 on 13 Feb, 7 March and 17 June 2016, respectively. As the preparation, a lightweight buoy was equipped with a GNSS receiver/choke-ring antenna and a MEMS-based IMU to measure independent datasets in the field operations. To obtain accurate sea surface height (SSH) time series, the offset of the onboard antenna from the equilibrium sea level was predetermined through surveying operations as the buoy was deploying in the onshore waters of Kangan Port. Accordingly, the double-difference carrier phase observations have been processed via the Bernese GPS Software v. 5.0 so as to provide the GNSS-derived time series at the comparison points of the calibration campaigns, once the disturbing effects due to the platform tilt and heave have been eliminated. Owing to comparing of the SSH time series and the associating altimetry 1 Hz GDR-T datasets, the calibration/validation of the SARAL/AltiKa has been performed in the both cases of radiometer and ECMWF wet troposphere corrections so as to identify potential land contamination. An agreement of the present findings in comparison with those attained in other international calibrations sites confirms the promising feasibility of Persian Gulf as a new dedicated site for calibration/validation of ongoing and future altimetry missions.

The Potentials Of Gnss-R For Sea Hazard Monitoring

NASA Astrophysics Data System (ADS)

Clarizia, Maria Paola; Toffoli, Alessandro

2013-04-01

GNSS-Reflectometry represents a new and innovative approach for ocean remote sensing. This technique exploits signals of opportunity from GNSS constellations (i.e. GPS, Glonass, Galileo etc.), reflected off the surface of the ocean, and uses these reflections to retrieve useful geophysical parameters of the ocean surface. GNSS-R is generating an increasing attention from the Remote Sensing community, especially in recent years, due to its numerous advantages compared to other classical remote sensing techniques. The exploitation of long-term, ubiquitous signals of opportunity freely available, the high space-time sampling capabilities and the ability of its L-band signals to penetrate well through rain all contribute to make this technique very attractive. An additional and very important strength of GNSS-R is the need for simple, low-cost/low-power GNSS receivers, that could be easily piggybacked on other satellites to form a constellation of receivers. These recognized potentials of GNSS-R have been recently led to the approval of the NASA EV-2 Cyclone Global Navigation Satellite System (CYGNSS), a spaceborne mission focused on tropical cyclone (TC) inner core process studies. GNSS-R can be used for both scatterometric applications (i.e. wind and wave monitoring) and altimetric applications (i.e. measurements of sea surface height). In particular, its ability to collect multiple GPS reflections anywhere on the globe and at any time (due to the ubiquity of GPS signals) using a large constellation of simple GNSS receivers, makes is very suitable for Real-Time (RT) and Near-Real Time (NRT) applications. These are particularly crucial for monitoring sea hazards related to ship operations and operational oceanography in general. For scatterometric purposes, GNSS-R can potentially detect high wind and waves in RT and NRT, as well as oil spills on the surface of the ocean, through its measurements of the sea surface roughness. In addition to that, GNSS-R could provide densely spaced Sea Surface Height (SSH) measurements, by collecting a number of reflections from different satellites within a field point of view. A number of sea hazards like tsunamis, high tides, storm surges of simply very high solitary waves in the ocean can be easily detected with GNSS-R measurements of SSH. The precision in the SSH measurement that can be achieved with GNSS-R is still considerably lower than that obtained with operational conventional altimetry. For this reason, GNSS-R is currently more suitable to detect large waves, since they generate a large signal in the data that allows for a better detection. The increase in the number of GNSS constellations and signals, and the improvements that the new signals will have (larger bandwidth, longer codes etc.) should ultimately lead to an overcome of the current limitations of GNSS for sea surface altimetry applications.

Preferential Targeting of a Signal Recognition Particle-dependent Precursor to the Ssh1p Translocon in Yeast♦

PubMed Central

Spiller, Michael P.; Stirling, Colin J.

2011-01-01

Protein translocation across the endoplasmic reticulum membrane occurs via a “translocon” channel formed by the Sec61p complex. In yeast, two channels exist: the canonical Sec61p channel and a homolog called Ssh1p. Here, we used trapped translocation intermediates to demonstrate that a specific signal recognition particle-dependent substrate, Sec71p, is targeted exclusively to Ssh1p. Strikingly, we found that, in the absence of Ssh1p, precursor could be successfully redirected to canonical Sec61p, demonstrating that the normal targeting reaction must involve preferential sorting to Ssh1p. Our data therefore demonstrate that Ssh1p is the primary translocon for Sec71p and reveal a novel sorting mechanism at the level of the endoplasmic reticulum membrane enabling precursors to be directed to distinct translocons. Interestingly, the Ssh1p-dependent translocation of Sec71p was found to be dependent upon Sec63p, demonstrating a previously unappreciated functional interaction between Sec63p and the Ssh1p translocon. PMID:21454595

A Real-time 1/16° Global Ocean Nowcast/Forecast System

NASA Astrophysics Data System (ADS)

Shriver, J. F.; Rhodes, R. C.; Hurlburt, H. E.; Wallcraft, A. J.; Metzger, E. J.; Smedstad, O. M.; Kara, A. B.

2001-05-01

A 1/16° eddy-resolving global ocean prediction system that uses the NRL Layered Ocean Model (NLOM) has been transitioned to the Naval Oceanographic Office (NAVO), Stennis Space Center, MS. The system gives a real time view of the ocean down to the 50-100 mile scale of ocean eddies and the meandering of ocean currents and fronts, a view with unprecedented resolution and clarity, and demonstrated forecast skill for a month or more for many ocean features. It has been running in real time at NAVO since 19 Oct 2000 with assimilation of real-time altimeter sea surface height (SSH) data (currently ERS-2, GFO and TOPEX/POSEIDON) and sea surface temperature (SST). The model is updated daily and 4-day forecasts are made daily. 30-day forecasts are made once a week. Nowcasts and forecasts using this model are viewable on the web, including SSH, SST and 30-day forecast verification statistics for many zoom regions. The NRL web address is http://www7320.nrlssc.navy.mil/global_nlom/index.html. The NAVO web address is: http://www.navo.navy.mil. Click on "Operational Products", then "Product Search Form", then "Product Type View", then select "Model Navy Layered Ocean Model" and a region and click on "Submit Query". This system is used at NAVO for ocean front and eddy analyses and predictions and to provide accurate sea surface height for use in computing synthetic temperature and salinity profiles, among other applications.

Environmental factor analysis of cholera in China using remote sensing and geographical information systems.

PubMed

Xu, M; Cao, C X; Wang, D C; Kan, B; Xu, Y F; Ni, X L; Zhu, Z C

2016-04-01

Cholera is one of a number of infectious diseases that appears to be influenced by climate, geography and other natural environments. This study analysed the environmental factors of the spatial distribution of cholera in China. It shows that temperature, precipitation, elevation, and distance to the coastline have significant impact on the distribution of cholera. It also reveals the oceanic environmental factors associated with cholera in Zhejiang, which is a coastal province of China, using both remote sensing (RS) and geographical information systems (GIS). The analysis has validated the correlation between indirect satellite measurements of sea surface temperature (SST), sea surface height (SSH) and ocean chlorophyll concentration (OCC) and the local number of cholera cases based on 8-year monthly data from 2001 to 2008. The results show the number of cholera cases has been strongly affected by the variables of SST, SSH and OCC. Utilizing this information, a cholera prediction model has been established based on the oceanic and climatic environmental factors. The model indicates that RS and GIS have great potential for designing an early warning system for cholera.

SSH-2 measurements of cirrus at 18-28 micrometers from the King Air during FIRE 2

NASA Technical Reports Server (NTRS)

Griffin, Michael K.

1993-01-01

In November of 1991, the First ISCCP (International Satellite Cloud Climatology Project) Regional Experiment (FIRE) Phase II cirrus study took place at Coffeyville, Kansas. The field experiment incorporated instrumentation from surface, aircraft, and satellite to attempt to define the optical, radiative, and microphysical characteristics of these high altitude, predominantly ice clouds. The NCAR King Air research aircraft was outfitted with a variety of radiative and microphysical instrumentation for the FIRE II project. Included for this project was the SSH-2, a 16-channel passive radiometer. The SSH-2 was originally designed as a space-qualified infrared (IR) temperature and water vapor sounder for deployment onboard the Defense Meteorological Satellite Program (DMSP) series of environmental satellites. For this experiment, only those channels associated with the water vapor profiling function have been examined although downwelling radiance measurements were taken at all channels during the project. With supporting information from the aircraft telemetry observations it may be possible to relate these SSH-2 measurements to cloud radiative and microphysical properties. The following sections will describe the spectral characteristics of the instrument, the calibration scheme used to convert the raw measured counts into calibrated radiances, and the case studies that will be covered in this paper. This will be followed by a discussion of the results of this preliminary investigation and a description of future work to be done.

NASA RapidScat Observes El Nino Blowing in the Winds

NASA Image and Video Library

2016-01-21

While El Niño events have a significant impact on the entire Earth System, they are most easily visible in measurements of sea surface temperature (SST), sea surface height (SSH) and ocean winds near the surface. In fact, the precursor and the main driver of El Niño events is manifested in the weakening of the normally westward blowing trade winds, or even their complete reversal to blow from west to east, in the Western and Central tropical Pacific. http://photojournal.jpl.nasa.gov/catalog/PIA20365

Instrumented SSH

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campbell, Scott; Campbell, Scott

NERSC recently undertook a project to access and analyze Secure Shell (SSH) related data. This includes authentication data such as user names and key fingerprints, interactive session data such as keystrokes and responses, and information about noninteractive sessions such as commands executed and files transferred. Historically, this data has been inaccessible with traditional network monitoring techniques, but with a modification to the SSH daemon, this data can be passed directly to intrusion detection systems for analysis. The instrumented version of SSH is now running on all NERSC production systems. This paper describes the project, details about how SSH was instrumented,more » and the initial results of putting this in production.« less

Sea surface height and dynamic topography of the ice-covered oceans from CryoSat-2: 2011-2014

NASA Astrophysics Data System (ADS)

Kwok, Ron; Morison, James

2016-01-01

We examine 4 years (2011-2014) of sea surface heights (SSH) from CryoSat-2 (CS-2) over the ice-covered Arctic and Southern Oceans. Results are from a procedure that identifies and determines the heights of sea surface returns. Along 25 km segments of satellite ground tracks, variability in the retrieved SSHs is between ˜2 and 3 cm (standard deviation) in the Arctic and is slightly higher (˜3 cm) in the summer and the Southern Ocean. Average sea surface tilts (along these 25 km segments) are 0.01 ± 3.8 cm/10 km in the Arctic, and slightly lower (0.01 ± 2.0 cm/10 km) in the Southern Ocean. Intra-seasonal variability of CS-2 dynamic ocean topography (DOT) in the ice-covered Arctic is nearly twice as high as that of the Southern Ocean. In the Arctic, we find a correlation of 0.92 between 3 years of DOT and dynamic heights (DH) from hydrographic stations. Further, correlation of 4 years of area-averaged CS-2 DOT near the North Pole with time-variable ocean-bottom pressure from a pressure gauge and from GRACE, yields coefficients of 0.83 and 0.77, with corresponding differences of <3 cm (RMS). These comparisons contrast the length scale of baroclinic and barotropic features and reveal the smaller amplitude barotropic signals in the Arctic Ocean. Broadly, the mean DOT from CS-2 for both poles compares well with those from the ICESat campaigns and the DOT2008A and DTU13MDT fields. Short length scale topographic variations, due to oceanographic signals and geoid residuals, are especially prominent in the Arctic Basin but less so in the Southern Ocean.

Direct SSH Gateway Access to Peregrine | High Performance Computing |

Science.gov Websites

can access peregrine-ssh.nrel.gov, you must have: An active NREL HPC user account (see User Accounts ) An OTP Token (see One Time Password Tokens) Logging into peregrine-ssh.nrel.gov With your HPC account

Climate and cholera in KwaZulu-Natal, South Africa: the role of environmental factors and implications for epidemic preparedness.

PubMed

Mendelsohn, Joshua; Dawson, Terry

2008-03-01

A cholera epidemic that took place in KwaZulu-Natal, South Africa (2000-2001) was employed to investigate the impact of climatic and environmental drivers on cholera dynamics. Precipitation (PRE), sea surface temperature (SST) and chlorophyll-a (CHL-a) data acquired from publicly available satellite and ground measurements were analysed together with disease incidence in an effort to assess the environmental contribution to the outbreak. SST (r(2)=0.749, lag=0 months) and PRE (r(2)=0.744, lag=2 months) showed strong associations with incidence. CHL-a showed a moderately strong (r(2)=0.656, lag=6 months) association with incidence while sea surface height (SSH) demonstrated a weak relationship with incidence (r(2)=0.326, lag=5 months). Our analysis tentatively supports a coastal transmission hypothesis, heavily influenced by localized PRE extremes. The role of SSH is likely attenuated by local coastal topography. Future work should clarify the mechanism linking coastal cholera reservoirs and the regional climate system to outbreaks in this region. Finally, we discuss benefits of further research in this area using extended remotely sensed and epidemiological datasets towards the development of early-warning systems and enhanced epidemic preparedness.

Minimal-length Synthetic shRNAs Formulated with Lipid Nanoparticles are Potent Inhibitors of Hepatitis C Virus IRES-linked Gene Expression in Mice

PubMed Central

Dallas, Anne; Ilves, Heini; Shorenstein, Joshua; Judge, Adam; Spitler, Ryan; Contag, Christopher; Wong, Suet Ping; Harbottle, Richard P; MacLachlan, Ian; Johnston, Brian H

2013-01-01

We previously identified short synthetic shRNAs (sshRNAs) that target a conserved hepatitis C virus (HCV) sequence within the internal ribosome entry site (IRES) of HCV and potently inhibit HCV IRES-linked gene expression. To assess in vivo liver delivery and activity, the HCV-directed sshRNA SG220 was formulated into lipid nanoparticles (LNP) and injected i.v. into mice whose livers supported stable HCV IRES-luciferase expression from a liver-specific promoter. After a single injection, RNase protection assays for the sshRNA and 3H labeling of a lipid component of the nanoparticles showed efficient liver uptake of both components and long-lasting survival of a significant fraction of the sshRNA in the liver. In vivo imaging showed a dose-dependent inhibition of luciferase expression (>90% 1 day after injection of 2.5 mg/kg sshRNA) with t1/2 for recovery of about 3 weeks. These results demonstrate the ability of moderate levels of i.v.-injected, LNP-formulated sshRNAs to be taken up by liver hepatocytes at a level sufficient to substantially suppress gene expression. Suppression is rapid and durable, suggesting that sshRNAs may have promise as therapeutic agents for liver indications. PMID:24045712

Attenuation of CCl4-Induced Oxidative Stress and Hepatonephrotoxicity by Saudi Sidr Honey in Rats.

PubMed

Al-Yahya, Mohammed; Mothana, Ramzi; Al-Said, Mansour; Al-Dosari, Mohammed; Al-Musayeib, Nawal; Al-Sohaibani, Mohammed; Parvez, Mohammad Khalid; Rafatullah, Syed

2013-01-01

The present study was undertaken to investigate the possible protective effect of Saudi Sidr honey (SSH) on carbon tetrachloride (CCl4) induced oxidative stress and liver and kidney damage in rat. Moreover, the antioxidant activity and the phenolic and flavonoidal contents were determined. The hepatorenal protective activity of the SSH was determined by assessing biochemical, hematological, and histological parameters. Serum transaminases, ALP, GGT, creatinine, bilirubin urea, uric acid, and MDA level in liver and kidney tissues were significantly elevated, and the antioxidant status of nonprotein sulfhydryls, albumin, and total protein levels in liver and kidney were declined significantly in CCl4 alone treated animals. Pretreatment with SSH and silymarin prior to the administration of CCl4 significantly prevented the increase of the serum levels of enzyme markers and reduced oxidative stress. SSH also exhibited a significant lipid-lowering effect and caused an HDL-C enhanced level in serum. The histopathological evaluation of the liver and kidney also revealed that honey protected incidence of both liver and kidney lesions. Moreover, SSH showed a strong antioxidant activity in DPPH and β -carotene-linoleic acid assays. SSH was found to contain phenolic compounds. Additionally, the SSH supplementation restored the hepatocytes viability against 2',7'-dichlorofluorescein (DCF) toxicity in ex vivo test.

Attenuation of CCl4-Induced Oxidative Stress and Hepatonephrotoxicity by Saudi Sidr Honey in Rats

PubMed Central

Al-Yahya, Mohammed; Mothana, Ramzi; Al-Said, Mansour; Al-Dosari, Mohammed; Al-Musayeib, Nawal; Al-Sohaibani, Mohammed; Parvez, Mohammad Khalid; Rafatullah, Syed

2013-01-01

The present study was undertaken to investigate the possible protective effect of Saudi Sidr honey (SSH) on carbon tetrachloride (CCl4) induced oxidative stress and liver and kidney damage in rat. Moreover, the antioxidant activity and the phenolic and flavonoidal contents were determined. The hepatorenal protective activity of the SSH was determined by assessing biochemical, hematological, and histological parameters. Serum transaminases, ALP, GGT, creatinine, bilirubin urea, uric acid, and MDA level in liver and kidney tissues were significantly elevated, and the antioxidant status of nonprotein sulfhydryls, albumin, and total protein levels in liver and kidney were declined significantly in CCl4 alone treated animals. Pretreatment with SSH and silymarin prior to the administration of CCl4 significantly prevented the increase of the serum levels of enzyme markers and reduced oxidative stress. SSH also exhibited a significant lipid-lowering effect and caused an HDL-C enhanced level in serum. The histopathological evaluation of the liver and kidney also revealed that honey protected incidence of both liver and kidney lesions. Moreover, SSH showed a strong antioxidant activity in DPPH and β-carotene-linoleic acid assays. SSH was found to contain phenolic compounds. Additionally, the SSH supplementation restored the hepatocytes viability against 2′,7′-dichlorofluorescein (DCF) toxicity in ex vivo test. PMID:23533498

From population connectivity to the art of striping Russian dolls: the lessons from Pocillopora corals.

PubMed

Gélin, Pauline; Fauvelot, Cécile; Bigot, Lionel; Baly, Joseph; Magalon, Hélène

2018-01-01

Here, we examined the genetic variability in the coral genus Pocillopora , in particular within the Primary Species Hypothesis PSH09, identified by Gélin, Postaire, Fauvelot and Magalon (2017) using species delimitation methods [also named Pocillopora eydouxi/meandrina complex sensu , Schmidt-Roach, Miller, Lundgren, & Andreakis (2014)] and which was found to split into three secondary species hypotheses (SSH09a, SSH09b, and SSH09c) according to assignment tests using multi-locus genotypes (13 microsatellites). From a large sampling (2,507 colonies) achieved in three marine provinces [Western Indian Ocean (WIO), Tropical Southwestern Pacific (TSP), and Southeast Polynesia (SEP)], genetic structuring analysis conducted with two clustering analyses (structure and DAPC) using 13 microsatellites revealed that SSH09a was restricted to the WIO while SSH09b and SSH09c were almost exclusively in the TSP and SEP. More surprisingly, each SSH split into two to three genetically differentiated clusters, found in sympatry at the reef scale, leading to a pattern of nested hierarchical levels (PSH > SSH > cluster), each level hiding highly differentiated genetic groups. Thus, rather than structured populations within a single species, these three SSHs, and even the eight clusters, likely represent distinct genetic lineages engaged in a speciation process or real species. The issue is now to understand which hierarchical level (SSH, cluster, or even below) corresponds to the species one. Several hypotheses are discussed on the processes leading to this pattern of mixed clusters in sympatry, evoking formation of reproductive barriers, either by allopatric speciation or habitat selection.

Understanding controls of hydrologic processes across two monolithological catchments using model-data integration

NASA Astrophysics Data System (ADS)

Xiao, D.; Shi, Y.; Li, L.

2016-12-01

Field measurements are important to understand the fluxes of water, energy, sediment, and solute in the Critical Zone however are expensive in time, money, and labor. This study aims to assess the model predictability of hydrological processes in a watershed using information from another intensively-measured watershed. We compare two watersheds of different lithology using national datasets, field measurements, and physics-based model, Flux-PIHM. We focus on two monolithological, forested watersheds under the same climate in the Shale Hills Susquehanna CZO in central Pennsylvania: the Shale-based Shale Hills (SSH, 0.08 km2) and the sandstone-based Garner Run (GR, 1.34 km2). We firstly tested the transferability of calibration coefficients from SSH to GR. We found that without any calibration the model can successfully predict seasonal average soil moisture and discharge which shows the advantage of a physics-based model, however, cannot precisely capture some peaks or the runoff in summer. The model reproduces the GR field data better after calibrating the soil hydrology parameters. In particular, the percentage of sand turns out to be a critical parameter in reproducing data. With sandstone being the dominant lithology, GR has much higher sand percentage than SSH (48.02% vs. 29.01%), leading to higher hydraulic conductivity, lower overall water storage capacity, and in general lower soil moisture. This is consistent with area averaged soil moisture observations using the cosmic-ray soil moisture observing system (COSMOS) at the two sites. This work indicates that some parameters, including evapotranspiration parameters, are transferrable due to similar climatic and land cover conditions. However, the key parameters that control soil moisture, including the sand percentage, need to be recalibrated, reflecting the key role of soil hydrological properties.

Heavy-tailed distribution of the SSH Brute-force attack duration in a multi-user environment

NASA Astrophysics Data System (ADS)

Lee, Jae-Kook; Kim, Sung-Jun; Park, Chan Yeol; Hong, Taeyoung; Chae, Huiseung

2016-07-01

Quite a number of cyber-attacks to be place against supercomputers that provide highperformance computing (HPC) services to public researcher. Particularly, although the secure shell protocol (SSH) brute-force attack is one of the traditional attack methods, it is still being used. Because stealth attacks that feign regular access may occur, they are even harder to detect. In this paper, we introduce methods to detect SSH brute-force attacks by analyzing the server's unsuccessful access logs and the firewall's drop events in a multi-user environment. Then, we analyze the durations of the SSH brute-force attacks that are detected by applying these methods. The results of an analysis of about 10 thousands attack source IP addresses show that the behaviors of abnormal users using SSH brute-force attacks are based on human dynamic characteristics of a typical heavy-tailed distribution.

Mesoscale dynamics in the Lofoten Basin - a sub-Arctic "hot spot" of oceanic variability

NASA Astrophysics Data System (ADS)

Volkov, D. L.; Belonenko, T. V.; Foux, V. R.

2012-12-01

A sub-Arctic "hot spot" of intense mesoscale variability is observed in the Lofoten Basin (LB) - a topographic depression with a maximum depth of about 3250 m, located in the Norwegian Sea. The standard deviation of sea surface height (SSH), measured with satellite altimetry, reaches nearly 15 cm in the center of the basin (Figure 1a). Using a space-time lagged correlation analysis of altimetry data, we discover a cyclonic propagation of the mesoscale SSH anomalies around the center of the LB with time-averaged phase speeds of 2-4 km/day, strongly linked to bottom topography (Figure 1c). The fact that surface drifter trajectories do not exhibit cyclonic circulation in the LB (Figure 1b) suggests that, at least in the upper ocean, satellite altimetry observes only the propagation of form without the corresponding transfer of mass. Linearly propagating wavelike disturbances that do not trap fluid inside are related to planetary or Rossby waves. Variations in topography may lead to the concentration of wave energy in certain regions or wave trapping. The dispersion analysis suggests that the observed wavelike cyclonic propagation of SSH anomalies in the LB is the manifestation of baroclinic topographic Rossby waves, that we term "the basin waves" in order to distinguish them from the other types of topographic waves, such as shelf or trench waves. We identify two modes of basin waves in the LB: a di-pole mode and a quadri-pole mode. The wavelength of each mode is about 500 km. The frequency of these modes is not constant and the phase speed varies from about 2 to 8 km/day. We show that the cyclonically rotating basin waves are responsible for the observed amplification of SSH variability in the LB. Because the baroclinic basin waves in the LB are probably associated with large vertical displacements of the thermocline and due to possible wave breaking events, they can play an important role in the mixing of the inflowing Atlantic Water with ambient water masses.(a) Standard deviation of SSH (cm) in the Nordic seas. Bottom topography is shown by 1000, 2000, and 3000 m isobaths. Abbreviations: GB - Greenland Basin, LB - Lofoten Basin, NB - Norwegian Basin, NwAC - Norwegian Atlantic Current, VP - Vøring Plateau. The study region is bounded by the blue rectangle. (b) Trajectories of 100 surface drifters (blue curves) that were present in the study region from September 1996 to August 2010 and their geostrophic velocity vectors (red arrows) averaged over 1°×0.25° (longitude × latitude) bins. (c) MDT_CNES_CLS09 mean dynamic topography (color, cm) and the velocities of eddy propagation (arrows). Two ellipsoidal contours, along which the dispersion relation was analyzed, are shown.

Direct Access to Peregrine for External Users | High-Performance Computing

Science.gov Websites

| NREL Direct Access to Peregrine for External Users Direct Access to Peregrine for External : ssh yourHPCuserid@peregrine-ssh.nrel.gov For more information, please read this page. About direct ssh allow access to VPNs. Our current jump-node (hpcsh.nrel.gov) does not provide direct-to-peregrine access

Mapping the evidence of prevention and intervention studies for suicidal and self-harming behaviors in young people.

PubMed

De Silva, Stefanie; Parker, Alexandra; Purcell, Rosemary; Callahan, Patrick; Liu, Ping; Hetrick, Sarah

2013-01-01

Suicide and self-harm (SSH) in young people is a major cause of disability-adjusted life years. Effective interventions are of critical importance to reducing the mortality and morbidity associated with SSH. To investigate the extent and nature of research on interventions to prevent and treat SSH in young people using evidence mapping. A systematic search for SSH intervention studies was conducted (participant mean age between 6-25 years). The studies were restricted to high-quality evidence in the form of systematic reviews, meta-analyses, and controlled trials. Thirty-eight controlled studies and six systematic reviews met the study inclusion criteria. The majority (n = 32) involved psychological interventions. Few studies (n = 9) involved treating young people with recognized mental disorders or substance abuse (n = 1) which also addressed SSH. The map was restricted to RCTs, CCTs, systematic reviews, and meta-analyses, and thus might have neglected important information from other study designs. The effectiveness of interventions within the trials was not evaluated. The evidence base for SSH interventions in young people is not well established, which hampers best-practice efforts in this area. Promising interventions that need further research include school-based prevention programs with a skills training component, individual CBT interventions, interpersonal psychotherapy, and attachment-based family therapy. Gaps in the research exist in evaluations of interventions for SSH in young people with identifiable psychopathology, particularly substance use disorder, and research that classifies participants on the basis of their suicidal intent.

Spectra of Baroclinic Inertia-Gravity Wave Turbulence

NASA Technical Reports Server (NTRS)

Glazman, Roman E.

1996-01-01

Baroclinic inertia-gravity (IG) waves form a persistent background of thermocline depth and sea surface height oscillations. They also contribute to the kinetic energy of horizontal motions in the subsurface layer. Measured by the ratio of water particle velocity to wave phase speed, the wave nonlinearity may be rather high. Given a continuous supply of energy from external sources, nonlinear wave-wave interactions among IG waves would result in inertial cascades of energy, momentum, and wave action. Based on a recently developed theory of wave turbulence in scale-dependent systems, these cascades are investigated and IG wave spectra are derived for an arbitrary degree of wave nonlinearity. Comparisons with satellite-altimetry-based spectra of surface height variations and with energy spectra of horizontal velocity fluctuations show good agreement. The well-known spectral peak at the inertial frequency is thus explained as a result of the inverse cascade. Finally, we discuss a possibility of inferring the internal Rossby radius of deformation and other dynamical properties of the upper thermocline from the spectra of SSH (sea surface height) variations based on altimeter measurements.

Assimilation of Satellite Sea Surface Salinity Fields: Validating Ocean Analyses and Identifying Errors in Surface Buoyancy Fluxes

NASA Astrophysics Data System (ADS)

Mehra, A.; Nadiga, S.; Bayler, E. J.; Behringer, D.

2014-12-01

Recently available satellite sea-surface salinity (SSS) fields provide an important new global data stream for assimilation into ocean forecast systems. In this study, we present results from assimilating satellite SSS fields from NASA's Aquarius mission into the National Oceanic and Atmospheric Administration's (NOAA) operational Modular Ocean Model version 4 (MOM4), the oceanic component of NOAA's operational seasonal-interannual Climate Forecast System (CFS). Experiments on the sensitivity of the ocean's overall state to different relaxation time periods were run to evaluate the importance of assimilating high-frequency (daily to mesoscale) and low-frequency (seasonal) SSS variability. Aquarius SSS data (Aquarius Data Processing System (ADPS) version 3.0), mapped daily fields at 1-degree spatial resolution, were used. Four model simulations were started from the same initial ocean condition and forced with NOAA's daily Climate Forecast System Reanalysis (CFSR) fluxes, using a relaxation technique to assimilate daily satellite sea surface temperature (SST) fields and selected SSS fields, where, except as noted, a 30-day relaxation period is used. The simulations are: (1) WOAMC, the reference case and similar to the operational setup, assimilating monthly climatological SSS from the 2009 NOAA World Ocean Atlas; (2) AQ_D, assimilating daily Aquarius SSS; (3) AQ_M, assimilating monthly Aquarius SSS; and (4) AQ_D10, assimilating daily Aquarius SSS, but using a 10-day relaxation period. The analysis focuses on the tropical Pacific Ocean, where the salinity dynamics are intense and dominated by El Niño interannual variability in the cold tongue region and by high-frequency precipitation events in the western Pacific warm pool region. To assess the robustness of results and conclusions, we also examine the results for the tropical Atlantic and Indian Oceans. Preliminary validation studies are conducted using observations, such as satellite sea-surface height (SSH) fields and in situ Argo buoy vertical profiles of temperature and salinity, to demonstrate that SSS data assimilation improves ocean state representation of the following variables: ocean heat content (0-300m), dynamic height (0-1000m), mixed-layer depth, sea surface heigh, and surface buoyancy fluxes.

Predictability of Subsurface Temperature and the AMOC

NASA Astrophysics Data System (ADS)

Chang, Y.; Schubert, S. D.

2013-12-01

GEOS 5 coupled model is extensively used for experimental decadal climate prediction. Understanding the limits of decadal ocean predictability is critical for making progress in these efforts. Using this model, we study the subsurface temperature initial value predictability, the variability of the Atlantic meridional overturning circulation (AMOC) and its impacts on the global climate. Our approach is to utilize the idealized data assimilation technology developed at the GMAO. The technique 'replay' allows us to assess, for example, the impact of the surface wind stresses and/or precipitation on the ocean in a very well controlled environment. By running the coupled model in replay mode we can in fact constrain the model using any existing reanalysis data set. We replay the model constraining (nudging) it to the MERRA reanalysis in various fields from 1948-2012. The fields, u,v,T,q,ps, are adjusted towards the 6-hourly analyzed fields in atmosphere. The simulated AMOC variability is studied with a 400-year-long segment of replay integration. The 84 cases of 10-year hindcasts are initialized from 4 different replay cycles. Here, the variability and predictability are examined further by a measure to quantify how much the subsurface temperature and AMOC variability has been influenced by atmospheric forcing and by ocean internal variability. The simulated impact of the AMOC on the multi-decadal variability of the SST, sea surface height (SSH) and sea ice extent is also studied.

Three modes of interdecadal trends in sea surface temperature and sea surface height

NASA Astrophysics Data System (ADS)

Gnanadesikan, A.; Pradal, M.

2013-12-01

It might be thought that sea surface height and sea surface temperature would be tightly related. We show that this is not necessarily the case on a global scale. We analysed this relationship in a suite of coupled climate models run under 1860 forcing conditions. The models are low-resolution variants of the GFDL Earth System Model, reported in Galbraith et al. (J. Clim. 2011). 1. Correlated changes in global sea surface height and global sea surface temperature. This mode corresponds to opening and closing of convective chimneys in the Southern Ocean. As the Southern Ocean destratifies, sea ice formation is suppressed during the winter and more heat is taken up during the summer. This mode of variability is highly correlated with changes in the top of the atmosphere radiative budget and weakly correlated with changes in the deep ocean circulation. 2. Uncorrelated changes in global sea surface height and global sea surface temperature. This mode of variability is associated with interdecadal variabliity in tropical winds. Changes in the advective flux of heat to the surface ocean play a critical role in driving these changes, which also result in significant local changes in sea level. Changes sea ice over the Southern Ocean still result in changes in solar absorption, but these are now largely cancelled by changes in outgoing longwave radiation. 3. Anticorrelated changes in global sea surface height and global sea surface temperatures. By varying the lateral diffusion coefficient in the ocean model, we are able to enhance and suppress convection in the Southern and Northern Pacific Oceans. Increasing the lateral diffusion coefficients shifts the balance sources of deep water away from the warm salty deep water of the North Atlantic and towards cold fresh deep water from the other two regions. As a result, even though the planet as a whole warms, the deep ocean cools and sea level falls, with changes of order 30 cm over 500 years. The increase in solar absorption in polar regions is more than compensated by an increase in outgoing longwave radiation. Relationship between global SSH trend over a decade and (A) local SSH change over a decade (m/m). (B) Global SST change over a decade (m/K) (C) Portion of decadal SST change correlated with net radiation at the top of the atmosphere (m/K) (D) Portion of decadal SST change not correlated with net radiation at the top of the atmosphere.

Tle Triangulation Campaign by Japanese High School Students as a Space Educational Project of the Ssh Consortium Kochi

NASA Astrophysics Data System (ADS)

Yamamoto, Masa-Yuki; Okamoto, Sumito; Miyoshi, Terunori; Takamura, Yuzaburo; Aoshima, Akira; Hinokuchi, Jin

As one of the space educational projects in Japan, a triangulation observation project of TLE (Transient Luminous Events: sprites, elves, blue-jets, etc.) has been carried out since 2006 in collaboration between 29 Super Science High-schools (SSH) and Kochi University of Technol-ogy (KUT). Following with previous success of sprite observations by "Astro High-school" since 2004, the SSH consortium Kochi was established as a national space educational project sup-ported by Japan Science and Technology Agency (JST). High-sensitivity CCD camera (Watec, Neptune-100) with 6 mm F/1.4 C-mount lens (Fujinon) and motion-detective software (UFO-Capture, SonotaCo) were given to each participating team in order to monitor Northern night sky of Japan with almost full-coverage. During each school year (from April to March in Japan) since 2006, thousands of TLE images were taken by many student teams, with considerably large numbers of successful triangulations, i.e., (School year, Numbers of TLE observations, Numbers of triangulations) are (2006, 43, 3), (2007, 441, 95), (2008, 734, 115), and (2009, 337, 78). Note that, school year in Japan begins on April 1 and ends on March 31. The observation campaign began in December 2006, numbers are as of Feb. 28, 2010. Recently, some high schools started wide field observations using multiple cameras, and others started VLF observations using handmade loop antennae and amplifiers. Infomation exchange among the SSH consortium Kochi is frequently communicated with scientific discussion via KUT's mailing lists. Also, interactions with amateur observers in Japan are made through an internet forum of "SonotaCo Network Japan" (http://sonotaco.jp). Not only as an educational project but also as a scientific one, the project is also in success. In February 2008, simultaneous observations of Elves were obtained, in November 2009 a Giant "Graft-shaped" Sprites driven by Jets was clearly imaged with VLF signals. Most recently, ob-servations of Elves and sprite halos with stripes like wave structures on airglow were successfully imaged in January 2010. In this talk, four years activities of the SSH consortium Kochi will be presented by participating high-school students and teachers with their own impressions.

Generation of Mesoscale Eddies in the Lee of the Hawaiian Islands

DTIC Science & Technology

2011-11-08

temperature (SST) as observed by the Geostationary Operational Environmental Satellites (GOES, Figure lb, data available at http://oceanwatch.pifsc...hour per response, including the time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and...The SSH is composed of the SSH anomaly from satellite JASON-1 by the AVISO group and the mean SSH of Niiler et al. [2003] (hereafter referred to

Patterns of internationalization and criteria for research assessment in the social sciences and humanities.

PubMed

Sivertsen, Gunnar

This article investigates the developments during the last decades in the use of languages, publication types and publication channels in the social sciences and humanities (SSH). The purpose is to develop an understanding of the processes of internationalization and to apply this understanding in a critical examination of two often used general criteria in research evaluations in the SSH. One of them is that the coverage of a publication in Scopus or Web of Science is seen in itself as an expression of research quality and of internationalization. The other is that a specific international language, English, and a specific type of publication, journal articles, are perceived as supreme in a general hierarchy of languages and publication types. Simple distinctions based on these criteria are contrary to the heterogeneous publication patterns needed in the SSH to organize their research adequately, present their results properly, reach their audiences efficiently, and thereby fulfil their missions. Research quality, internationalization, and societal relevance can be promoted in research assessment in the SSH without categorical hierarchies of publications. I will demonstrate this by using data from scholarly publishing in the SSH that go beyond the coverage in the commercial data sources in order to give a more comprehensive representation of scholarly publishing in the SSH.

Growth, optical, thermal, mechanical and dielectric studies of sodium succinate hexahydrate (β phase) single crystal: A promising third order NLO material

NASA Astrophysics Data System (ADS)

Mageshwari, P. S. Latha; Priya, R.; Krishnan, S.; Joseph, V.; Das, S. Jerome

2016-11-01

A third order nonlinear optical (NLO)single crystals of sodium succinate hexahydrate (SSH) (β phase) has been grown by a slow evaporation growth technique using aqueous solution at ambient temperature. The lattice parameters and morphology of SSH were determined by single crystal X-ray diffraction analysis. SSH crystallizes in centrosymmetric monoclinic system with space group P 21 / c and the crystalline purity was analyzed by powder X-ray diffraction analysis. The UV-vis-NIR spectrum reveals that the crystal is transparent in the entire visible region. The recorded FT-IR spectrum verified the presence of various functional groups in the material. NMR analysis of the grown crystal confirms the structural elucidation and detects the major and minor functional groups present in the title compound. ICP-OES analysis proved the presence of sodium in SSH. TG-DTA/DSCanalysis was used to investigate the thermal stability of the material. The dielectric permittivity and dielectric loss of SSH were carried out as a function of frequency for different temperatures and the results were discussed. The mechanical stability was evaluated from Vicker's microhardness test. The third order nonlinear optical properties of SSH has been investigated employing Z-scan technique with He-Ne laser operating at 632.8 nm wavelength.

Why are social sciences and humanities needed in the works of IPBES? A systematic review of the literature

PubMed Central

Rankovic, Aleksandar; Lapeyre, Renaud

2018-01-01

Despite the increased attention, which has been given to the issue of involving knowledge and experts from the social sciences and humanities (SSH) into the products and works of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES), little is known on what the expectations towards the involvement of SSH in IPBES actually are. The aim of this paper is to close this gap by identifying the range of possible SSH contributions to IPBES that are expected in the literature, and discuss the inherent challenges of and concrete ways to realize these contributions in the particular institutional setting of IPBES. We address these two points by: firstly, assessing the literature dealing with IPBES and building a typology describing the main ways in which contributions from SSH to IPBES have been conceived between 2006 and 2017. We discuss these expected contributions in light of broader debates on the role of SSH in nature conservation and analyse some of the blind spots and selectivities in the perception of how SSH could substantially contribute to the works of IPBES. Then, secondly, by looking at one particular example, economics and its use in the first thematic assessment on pollinators, pollination and food production, we will concretely illustrate how works in a given discipline could contribute in many different and unprecedented ways to the works of IPBES and help identify paths for enhancing the conservation of biodiversity. Finally, we propose a range of practical recommendations as to how to increase the contribution of SSH in the works of IPBES. PMID:29706803

Fit to predict? Eco-informatics for predicting the catchability of a pelagic fish in near real time.

PubMed

Scales, Kylie L; Hazen, Elliott L; Maxwell, Sara M; Dewar, Heidi; Kohin, Suzanne; Jacox, Michael G; Edwards, Christopher A; Briscoe, Dana K; Crowder, Larry B; Lewison, Rebecca L; Bograd, Steven J

2017-12-01

The ocean is a dynamic environment inhabited by a diverse array of highly migratory species, many of which are under direct exploitation in targeted fisheries. The timescales of variability in the marine realm coupled with the extreme mobility of ocean-wandering species such as tuna and billfish complicates fisheries management. Developing eco-informatics solutions that allow for near real-time prediction of the distributions of highly mobile marine species is an important step towards the maturation of dynamic ocean management and ecological forecasting. Using 25 yr (1990-2014) of NOAA fisheries' observer data from the California drift gillnet fishery, we model relative probability of occurrence (presence-absence) and catchability (total catch per gillnet set) of broadbill swordfish Xiphias gladius in the California Current System. Using freely available environmental data sets and open source software, we explore the physical drivers of regional swordfish distribution. Comparing models built upon remotely sensed data sets with those built upon a data-assimilative configuration of the Regional Ocean Modelling System (ROMS), we explore trade-offs in model construction, and address how physical data can affect predictive performance and operational capacity. Swordfish catchability was found to be highest in deeper waters (>1,500 m) with surface temperatures in the 14-20°C range, isothermal layer depth (ILD) of 20-40 m, positive sea surface height (SSH) anomalies, and during the new moon (<20% lunar illumination). We observed a greater influence of mesoscale variability (SSH, wind speed, isothermal layer depth, eddy kinetic energy) in driving swordfish catchability (total catch) than was evident in predicting the relative probability of presence (presence-absence), confirming the utility of generating spatiotemporally dynamic predictions. Data-assimilative ROMS circumvent the limitations of satellite remote sensing in providing physical data fields for species distribution models (e.g., cloud cover, variable resolution, subsurface data), and facilitate broad-scale prediction of dynamic species distributions in near real time. © 2017 by the Ecological Society of America.

Two-leg Su-Schrieffer-Heeger chain with glide reflection symmetry

NASA Astrophysics Data System (ADS)

Zhang, Shao-Liang; Zhou, Qi

2017-06-01

The Su-Schrieffer-Heeger (SSH) model lays the foundation of many important concepts in quantum topological matters. Here, we show that a spin-dependent double-well optical lattice allows one to couple two topologically distinct SSH chains in the bulk and realize a glided-two-leg SSH model that respects the glide reflection symmetry. Such a model gives rise to intriguing quantum phenomena beyond the paradigm of a traditional SSH model. It is characterized by Wilson lines that require non-Abelian Berry connections, and the interplay between the glide symmetry and interaction automatically leads to charge fractionalization without jointing two lattice potentials at an interface. Our work demonstrates the versatility of ultracold atoms to create new theoretical models for studying topological matters.

Comparison of Two Global Ocean Reanalyses, NRL Global Ocean Forecast System (GOFS) and U. Maryland Simple Ocean Data Assimilation (SODA)

NASA Astrophysics Data System (ADS)

Richman, J. G.; Shriver, J. F.; Metzger, E. J.; Hogan, P. J.; Smedstad, O. M.

2017-12-01

The Oceanography Division of the Naval Research Laboratory recently completed a 23-year (1993-2015) coupled ocean-sea ice reanalysis forced by NCEP CFS reanalysis fluxes. The reanalysis uses the Global Ocean Forecast System (GOFS) framework of the HYbrid Coordinate Ocean Model (HYCOM) and the Los Alamos Community Ice CodE (CICE) and the Navy Coupled Ocean Data Assimilation 3D Var system (NCODA). The ocean model has 41 layers and an equatorial resolution of 0.08° (8.8 km) on a tri-polar grid with the sea ice model on the same grid that reduces to 3.5 km at the North Pole. Sea surface temperature (SST), sea surface height (SSH) and temperature-salinity profile data are assimilated into the ocean every day. The SSH anomalies are converted into synthetic profiles of temperature and salinity prior to assimilation. Incremental analysis updating of geostrophically balanced increments is performed over a 6-hour insertion window. Sea ice concentration is assimilated into the sea ice model every day. Following the lead of the Ocean Reanalysis Intercomparison Project (ORA-IP), the monthly mean upper ocean heat and salt content from the surface to 300 m, 700m and 1500 m, the mixed layer depth, the depth of the 20°C isotherm, the steric sea surface height and the Atlantic Meridional Overturning Circulation for the GOFS reanalysis and the Simple Ocean Data Assimilation (SODA 3.3.1) eddy-permitting reanalysis have been compared on a global uniform 0.5° grid. The differences between the two ocean reanalyses in heat and salt content increase with increasing integration depth. Globally, GOFS trends to be colder than SODA at all depth. Warming trends are observed at all depths over the 23 year period. The correlation of the upper ocean heat content is significant above 700 m. Prior to 2004, differences in the data assimilated lead to larger biases. The GOFS reanalysis assimilates SSH as profile data, while SODA doesn't. Large differences are found in the Western Boundary Currents, Southern Ocean and equatorial regions. In the Indian Ocean, the Equatorial Counter Current extends to far to the east and the subsurface flow in the thermocline is too weak in GOFS. The 20°C isotherm is biased 2 m shallow in SODA compared to GOFS, but the monthly anomalies in the depth are highly correlated.

Investigating the influence of sea level oscillations in the Danish Straits on the Baltic Sea dynamics

NASA Astrophysics Data System (ADS)

Tikhonova, Natalia; Gusev, Anatoly; Diansky, Nikolay; Zakharchuk, Evgeny

2016-04-01

In this research, we study the influence of dynamic processes in the Danish Straits on the sea surface height (SSH) oscillations in the Baltic Sea. For this purpose, we use the model of marine and oceanic circulation INMOM (Institute of Numerical Mathematics Ocean Model). The simulations were carried out for the period 2009-2010, and the coastal station data were used for verification of SSH modelling quality. Comparison of the simulated data with the ones measured in the coastal points showed us that the model does not describe SSH variability in different areas of the Baltic Sea well enough, so in the following simulation series the in situ SSH data of the coastal measurements were assimilated at the open boundary in the Danish Straits. The results of the new simulation showed us that this approach significantly increases the SSH simulation quality in all areas of the sea, where the comparison was made. In particular, the correlation coefficients between the simulated and measured SSH data increased from 0.21-0.73 to 0.81-0.90. On the basis of these results, it has been suggested that the Baltic Sea SSH variability is largely determined by the influence of the dynamic processes in the Danish Straits, which can be represented as a superposition of oscillations of different space-time scales. These oscillations can either be generated in the straits themselves, or propagate from the North Sea. For verification of this hypothesis and assessment of the oscillation propagation distance in the Baltic Sea, the following experiment was performed. At the open boundary in the Danish Straits, the six harmonics were set with the following parameters: the periods are 1.5, 3.0, 6.0, 13.5, 40.5, and 121.5 days, and the amplitude for all the harmonics is 50 cm. The results showed us that the prescribed harmonic oscillations at the open boundary propagate into all areas of the sea without changing the frequency, but with decreasing amplitude. The decrease in amplitude is not related to the distance between the measurement point and open boundary. For example, in the Gulfs of Finland and Riga, the 36hr harmonic has an amplitude substantially higher than in the open sea, and in the Stockholm area, this harmonic is at the noise level. The 40dy and 121dy harmonics have slightly lower amplitudes than the original prescribed signal, but they are almost unchanged while propagating further into the sea, and in all the investigated locations have almost identical peaks of spectral density. The 3dy and 6dy harmonics significantly lost their amplitude in all parts of the sea, and spectral density peaks are at the noise level. The simulation results showed us that the Danish straits do not filter 121dy and 40dy oscillations, and their amplitude does not decrease much. The 13dy, 6dy and 3dy oscillations significantly lose in amplitude and have no significant peaks of the spectral density. The 1.5dy harmonic propagates to the Gulfs of Finland and Riga, and increases in amplitude due to resonance at the natural frequency of the basin. It is suggested that, while Danish straits do not filter or transform frequency characteristics of oscillations propagated from the North Sea, but the Baltic Sea configuration may affect the magnitude and propagation extent of these oscillations. Thus, the fluctuations in the North Sea and the Danish Straits can significantly contribute to the Baltic Sea dynamics in the low-frequency range of the spectrum, and the periods of natural oscillations of the basin. The research was supported by the Russian Foundation for Basic Research (grant № 16-05-00534) and Saint-Petersburg State University (grant №18.37.140.2014)

What role for social sciences in socio-hydrology? Results from an online survey among hydrologists

NASA Astrophysics Data System (ADS)

Seidl, Roman; Barthel, Roland; Stauffacher, Michael

2015-04-01

The necessity of a more integrated approach in hydrological research has been highlighted by the IAHS scientific decade 2013-2022 "Panta Rhei", dedicated to foster multi-disciplinary research activities on changes in hydrology and society (Montanari, Young et al. 2013). On a similar note, the concept of Socio-Hydrology (Sivapalan, Savenije et al. 2012) suggests a much deeper involvement of hydrologists in socio-economic questions. Despite this general consensus, it remains unclear how such interdisciplinary approaches should be carried out and, in particular, which roles hydrological sciences (HS) and social sciences and the humanities (SSH) should assume. In order to evaluate the opinion of HS on the mutual contributions of HS and SSH to the process of integration, an online survey was prepared by the authors and announced through the newsletters of the International Association of Hydrogeologists (IAH) and the International Association of Hydrological Sciences (IAHS). Two sets of questions offered a choice of potential contributions to interdisciplinary processes of HS and SSH respectively. A third group of questions asked for the status of integration of HS and SSH and if improvements are needed. Finally, participants were asked to rank different options to foster or improve cooperation between natural and social scientists. 141 questionnaires could be used for further analysis. As expected the background of most participants is hydrology, but many also mention more than one discipline. Most participants have their main place of work in Europe. The answers were analysed using Factor and Cluster analysis to reveal potential patterns in the data. The main results from the survey can be summarized like this: The majority of respondents agrees that SSH is not well integrated into hydrological research as yet and most participants see a need for better cooperation. Expectations from hydrologists who should do what in integrative work, reveal that some roles are perceived similarly for both SSH and HS: Facilitate resource management, Exchange knowledge, Communicate the results, Reflect about the normative aspects, Secure public acceptance. However, hydrologists assume it is clearly more the role of SSH to study socio-economic aspects and the impact of human decisions on the environment, for instance. Higher status and acknowledgment by other colleagues does not seem to be a major incentive for integrative work, ranking lowest of all offered statements. However, the statement Hydrologists themselves should consider and integrate socio-economic aspects in their own work, was rated most often as most preferable. One can speculate that hydrologists (at least many in our sample) would like to learn from SSH but then apply that knowledge themselves; that is, "integrate" social science tasks into their field, or rather into a new discipline, socio-hydrology but not collaborate at eye-level with social scientists. We conclude that researchers interested in the integration of disciplines should explicitly specify how they would like to achieve this, what mutual expectations they have. In the case of the Panta Rhei initiative or Social Hydrology, this seems neither evident nor explicitly done. References: Montanari, A., et al. (2013). ""Panta Rhei -- Everything Flows": Change in hydrology and society -- The IAHS Scientific Decade 2013-2022." Hydrological Sciences Journal: 1-20. Sivapalan, M., et al. (2012). "Socio-hydrology: A new science of people and water." Hydrological Processes 26(8): 1270-1276.

Thrombin selectively engages LIM kinase 1 and slingshot-1L phosphatase to regulate NF-κB activation and endothelial cell inflammation

PubMed Central

Leonard, Antony; Marando, Catherine; Rahman, Arshad

2013-01-01

Endothelial cell (EC) inflammation is a central event in the pathogenesis of many pulmonary diseases such as acute lung injury and its more severe form acute respiratory distress syndrome. Alterations in actin cytoskeleton are shown to be crucial for NF-κB regulation and EC inflammation. Previously, we have described a role of actin binding protein cofilin in mediating cytoskeletal alterations essential for NF-κB activation and EC inflammation. The present study describes a dynamic mechanism in which LIM kinase 1 (LIMK1), a cofilin kinase, and slingshot-1Long (SSH-1L), a cofilin phosphatase, are engaged by procoagulant and proinflammatory mediator thrombin to regulate these responses. Our data show that knockdown of LIMK1 destabilizes whereas knockdown of SSH-1L stabilizes the actin filaments through modulation of cofilin phosphorylation; however, in either case thrombin-induced NF-κB activity and expression of its target genes (ICAM-1 and VCAM-1) is inhibited. Further mechanistic analyses reveal that knockdown of LIMK1 or SSH-1L each attenuates nuclear translocation and thereby DNA binding of RelA/p65. In addition, LIMK1 or SSH-1L depletion inhibited RelA/p65 phosphorylation at Ser536, a critical event conferring transcriptional competency to the bound NF-κB. However, unlike SSH-1L, LIMK1 knockdown also impairs the release of RelA/p65 by blocking IKKβ-dependent phosphorylation/degradation of IκBα. Interestingly, LIMK1 or SSH-1L depletion failed to inhibit TNF-α-induced RelA/p65 nuclear translocation and proinflammatory gene expression. Thus this study provides evidence for a novel role of LIMK1 and SSH-1L in selectively regulating EC inflammation associated with intravascular coagulation. PMID:24039253

Thrombin selectively engages LIM kinase 1 and slingshot-1L phosphatase to regulate NF-κB activation and endothelial cell inflammation.

PubMed

Leonard, Antony; Marando, Catherine; Rahman, Arshad; Fazal, Fabeha

2013-11-01

Endothelial cell (EC) inflammation is a central event in the pathogenesis of many pulmonary diseases such as acute lung injury and its more severe form acute respiratory distress syndrome. Alterations in actin cytoskeleton are shown to be crucial for NF-κB regulation and EC inflammation. Previously, we have described a role of actin binding protein cofilin in mediating cytoskeletal alterations essential for NF-κB activation and EC inflammation. The present study describes a dynamic mechanism in which LIM kinase 1 (LIMK1), a cofilin kinase, and slingshot-1Long (SSH-1L), a cofilin phosphatase, are engaged by procoagulant and proinflammatory mediator thrombin to regulate these responses. Our data show that knockdown of LIMK1 destabilizes whereas knockdown of SSH-1L stabilizes the actin filaments through modulation of cofilin phosphorylation; however, in either case thrombin-induced NF-κB activity and expression of its target genes (ICAM-1 and VCAM-1) is inhibited. Further mechanistic analyses reveal that knockdown of LIMK1 or SSH-1L each attenuates nuclear translocation and thereby DNA binding of RelA/p65. In addition, LIMK1 or SSH-1L depletion inhibited RelA/p65 phosphorylation at Ser(536), a critical event conferring transcriptional competency to the bound NF-κB. However, unlike SSH-1L, LIMK1 knockdown also impairs the release of RelA/p65 by blocking IKKβ-dependent phosphorylation/degradation of IκBα. Interestingly, LIMK1 or SSH-1L depletion failed to inhibit TNF-α-induced RelA/p65 nuclear translocation and proinflammatory gene expression. Thus this study provides evidence for a novel role of LIMK1 and SSH-1L in selectively regulating EC inflammation associated with intravascular coagulation.

Exploring image data assimilation in the prospect of high-resolution satellite oceanic observations

NASA Astrophysics Data System (ADS)

Durán Moro, Marina; Brankart, Jean-Michel; Brasseur, Pierre; Verron, Jacques

2017-07-01

Satellite sensors increasingly provide high-resolution (HR) observations of the ocean. They supply observations of sea surface height (SSH) and of tracers of the dynamics such as sea surface salinity (SSS) and sea surface temperature (SST). In particular, the Surface Water Ocean Topography (SWOT) mission will provide measurements of the surface ocean topography at very high-resolution (HR) delivering unprecedented information on the meso-scale and submeso-scale dynamics. This study investigates the feasibility to use these measurements to reconstruct meso-scale features simulated by numerical models, in particular on the vertical dimension. A methodology to reconstruct three-dimensional (3D) multivariate meso-scale scenes is developed by using a HR numerical model of the Solomon Sea region. An inverse problem is defined in the framework of a twin experiment where synthetic observations are used. A true state is chosen among the 3D multivariate states which is considered as a reference state. In order to correct a first guess of this true state, a two-step analysis is carried out. A probability distribution of the first guess is defined and updated at each step of the analysis: (i) the first step applies the analysis scheme of a reduced-order Kalman filter to update the first guess probability distribution using SSH observation; (ii) the second step minimizes a cost function using observations of HR image structure and a new probability distribution is estimated. The analysis is extended to the vertical dimension using 3D multivariate empirical orthogonal functions (EOFs) and the probabilistic approach allows the update of the probability distribution through the two-step analysis. Experiments show that the proposed technique succeeds in correcting a multivariate state using meso-scale and submeso-scale information contained in HR SSH and image structure observations. It also demonstrates how the surface information can be used to reconstruct the ocean state below the surface.

Multi-model Ensemble of Ocean Data Assimilation Products in The Northwestern Pacific and Their Quality Assessment

NASA Astrophysics Data System (ADS)

Isoguchi, O.; Matsui, K.; Kamachi, M.; Usui, N.; Miyazawa, Y.; Ishikawa, Y.; Hirose, N.

2017-12-01

Several operational ocean assimilation models are currently available for the Northwestern Pacific and surrounding marginal seas. One of the main targets is predicting the Kuroshio/Kuroshio Extension, which have an impact not only on social activities, such as fishery and ship routing, but also on local weather. There is a demand to assess their quality comprehensively and make the best out the available products. In the present study, several ocean data assimilation products and their multi-ensemble product were assessed by comparing with satellite-derived sea surface temperature (SST), sea surface height (SSH), and in-situ hydrographic sections. The Kuroshio axes were also computed from the surface currents of these products and were compared with the Kuroshio Axis data produced analyzing satellite-SST, SSH, and in-situ observations by Marine Information Research Center (MIRC). The multi-model ensemble products generally showed the best accuracy in terms of the comparisons with the satellite-derived SST and SSH. On the other hand, the ensemble products didn't result in the best one in the comparison with the hydrographic sections. It is thus suggested that the multi-model ensemble works efficiently for the horizontally 2D parameters for which each assimilation product tends to have random errors while it does not work well for the vertical 2D comparisons for which it tends to have bias errors with respect to in-situ data. In the assessment with the Kuroshio Axis Data, some products showed more energetic behavior than the Kuroshio Axis data, resulting in the large path errors which are defined as a ratio between an area surrounded by the reference and model-derived ones and a path length. It is however not determined which are real, because in-situ observations are still lacking to resolve energetic Kuroshio behavior even though the Kuroshio is one of the strongest current.

[Construction and analysis of a forward and reverse subtractive cDNA library from leaves and stem of Polygonum sibiricum Laxm. under salt stress].

PubMed

Liu, Guan-Jun; Liu, Ming-Kun; Xu, Zhi-Ru; Yan, Xiu-Feng; Wei, Zhi-Gang; Yang, Chuan-Ping

2009-04-01

Using cDNAs prepared from the leaves and stems of Polygonum sibiricum Laxm. treated with NaHCO3 stress for 48 h as testers and cDNAs from unstressed P. sibiricum leaves and stems as drivers library, suppression subtractive hybridization (SSH) was employed to construct a cDNA subtracted library, which contained 2 282 valid sequences including 598 ESTs in the stems forward SSH library and 490 ESTs in the stem reverse SSH library, 627 ESTs in the leaf forward SSH library and 567 in the leaf reverse SSH library. According to the functional catalogue of MIPs and the comparison of the reverse and forward SSH libraries of the stem and leaf, the responses to NaHCO3 stress were different between leaf and stem, except for the same trend in cell rescue defense and transport facilitation. The trend in the metabolism, energy, photosynthesis, protein synthesis, transcription, and signal transduction was opposite. RT-PCR analysis demonstrated that the expression of 12 putative stress related genes in the NaHCO3-treated leaves and stems was different from that in the untreated leaves and stems. This indicated that different mechanisms might be responsible for reactions of leaf and stem in P. sibiricum. The results from this study are useful in understanding the molecular mechanism of saline-alkali tolerance in P. sibiricum.

Anthropometric evaluation and recommendation for primary schools classroom furniture design in Perlis

NASA Astrophysics Data System (ADS)

Shan, Lim Shaiu; Jing, Ewe Hui; Effendi, M. S. M.; Rosli, Muhamad Farizuan

2017-09-01

This study was carried out with the objective to obtain the anthropometric data of primary school children from Year 1 to Year 6 and evaluate the children's anthropometry with the current dimensions of classroom furniture (i.e. chair and table). In addition, this study also proposed the design dimensions for the improvement in classroom furniture design with the consideration of children's anthropometric data. A total of 390 children selected from 13 primary schools in Perlis, Malaysia were participated in this study. There were 11 anthropometric measurements of children have been measured in this study, which include stature (St), popliteal height (PH), knee height (KH), thigh thickness (TT), buttock popliteal length (BPL), hip breadth (HB), sitting shoulder height (SSH), sitting elbow height (SEH), forearm-hand length (FHL), height of lumbar point (HLP) and buttock clearance (BC). Besides that, 7 dimensions relating to current classroom chair have been measured, such as seat height (SH), seat depth (SD), seat width (SW), upper edge of backrest (UEB), lower edge of backrest (LEB), S point (SP), overall chair height (OCH). Another 5 dimensions of the existing classroom table have been measured too, which involve table height (TH), table depth (TD), table width (TW), under table height (UH) and seat to table clearance (STC). All the measurements were performed by using metal measuring tape. The anthropometric data of the children were analyzed with the help of Microsoft Excel 2013. Several equations with associated with the anthropometric data and furniture dimensions have been applied in this research. The new design dimensions for classroom furniture that proposed in this paper which based on the collected anthropometric data can be referred as a guideline for classroom furniture design. The implementation of these data may help to create comfortability, safety, suitability and improve performance of children in the classroom.

Real-Time Eddy-Resolving Ocean Prediction in the Caribbean

NASA Astrophysics Data System (ADS)

Hurlburt, H. E.; Smedstad, O. M.; Shriver, J. F.; Townsend, T. L.; Murphy, S. J.

2001-12-01

A {1/16}o eddy-resolving, nearly global ocean prediction system has been developed by the Naval Research Laboratory (NRL), Stennis Space Center, MS. It has been run in real-time by the Naval Oceanographic Office (NAVO), Stennis Space Center, MS since 18 Oct 2000 with daily updates for the nowcast and 30-day forecasts performed every Wednesday. The model has ~8 km resolution in the Caribbean region and assimilates real-time altimeter sea surface height (SSH) data from ERS-2, GFO and TOPEX/POSEIDON plus multi-channel sea surface temperature (MCSST) from satellite IR. Real-time and archived results from the system can be seen at web site: http://www7320.nrlssc.navy.mil/global\

Corsica: A Multi-Mission Absolute Calibration Site

NASA Astrophysics Data System (ADS)

Bonnefond, P.; Exertier, P.; Laurain, O.; Guinle, T.; Femenias, P.

2013-09-01

In collaboration with the CNES and NASA oceanographic projects (TOPEX/Poseidon and Jason), the OCA (Observatoire de la Côte d'Azur) developed a verification site in Corsica since 1996, operational since 1998. CALibration/VALidation embraces a wide variety of activities, ranging from the interpretation of information from internal-calibration modes of the sensors to validation of the fully corrected estimates of the reflector heights using in situ data. Now, Corsica is, like the Harvest platform (NASA side) [14], an operating calibration site able to support a continuous monitoring with a high level of accuracy: a 'point calibration' which yields instantaneous bias estimates with a 10-day repeatability of 30 mm (standard deviation) and mean errors of 4 mm (standard error). For a 35-day repeatability (ERS, Envisat), due to a smaller time series, the standard error is about the double ( 7 mm).In this paper, we will present updated results of the absolute Sea Surface Height (SSH) biases for TOPEX/Poseidon (T/P), Jason-1, Jason-2, ERS-2 and Envisat.

Transport of the Norwegian Atlantic current as determined from satellite altimetry

NASA Technical Reports Server (NTRS)

Pistek, Pavel; Johnson, Donald R.

1992-01-01

Relatively warm and salty North Atlantic surface waters flow through the Faeroe-Shetland Channel into the higher latitudes of the Nordic Seas, preserving an ice-free winter environment for much of the exterior coast of northern Europe. This flow was monitored along the Norwegian coast using Geosat altimetry on two ascending arcs during the Exact Repeat Mission in 1987-1989. Concurrent undertrack CTD surveys were used to fix a reference surface for the altimeter-derived SSH anomalies, in effect creating time series of alongtrack surface dynamic height topographies. Climatologic CTD casts were then used, with empirical orthogonal function (EOF) analysis, to derive relationships between historical surface dynamic heights and vertical temperature and salinity profiles. Applying these EOF relationships to the altimeter signals, mean transports of volume, heat, and salt were calculated at approximately 2.9 Sverdrups, 8.1 x 10 exp 11 KCal/s and 1.0 x 10 exp 8 Kg/s, respectively. Maximum transports occurred in February/March and minimum in July/August.

Docker Container Manager: A Simple Toolkit for Isolated Work with Shared Computational, Storage, and Network Resources

NASA Astrophysics Data System (ADS)

Polyakov, S. P.; Kryukov, A. P.; Demichev, A. P.

2018-01-01

We present a simple set of command line interface tools called Docker Container Manager (DCM) that allow users to create and manage Docker containers with preconfigured SSH access while keeping the users isolated from each other and restricting their access to the Docker features that could potentially disrupt the work of the server. Users can access DCM server via SSH and are automatically redirected to DCM interface tool. From there, they can create new containers, stop, restart, pause, unpause, and remove containers and view the status of the existing containers. By default, the containers are also accessible via SSH using the same private key(s) but through different server ports. Additional publicly available ports can be mapped to the respective ports of a container, allowing for some network services to be run within it. The containers are started from read-only filesystem images. Some initial images must be provided by the DCM server administrators, and after containers are configured to meet one’s needs, the changes can be saved as new images. Users can see the available images and remove their own images. DCM server administrators are provided with commands to create and delete users. All commands were implemented as Python scripts. The tools allow to deploy and debug medium-sized distributed systems for simulation in different fields on one or several local computers.

Response of near-surface currents in the Indian Ocean to the anomalous atmospheric condition in 2015

NASA Astrophysics Data System (ADS)

Utari, P. A.; Nurkhakim, M. Y.; Setiabudidaya, D.; Iskandar, I.

2018-05-01

Anomalous ocean-atmosphere conditions were detected in the tropical Indian Ocean during boreal spring to boreal winter 2015. It was suggested that the anomalous conditions were characteristics of the positive Indian Ocean Dipole (pIOD) event. The purpose of this investigation was to investigate the response of near-surface currents in the tropical Indian Ocean to the anomalous atmospheric condition in 2015. Near-surface current from OSCAR (Ocean Surface Current Analyses Real Time) reanalysis data combined with the sea surface temperature (SST) data from OISST – NOAA, sea surface height (SSH) and surface winds from the ECMWF were used in this investigation. The analysis showed that the evolution of 2015 pIOD started in June/July, peaked in the September and terminated in late November 2015. Correlated with the evolution of the pIOD, easterly winds anomalies were detected along the equator. As the oceanic response to these easterly wind anomalies, the surface currents anomalously westward during the peak of the pIOD. It was interesting to note that the evolution of 2015 pIOD event was closely related to the ocean wave dynamics as revealed by the SSH data. Downwelling westward propagating Rossby waves were detected in the southwestern tropical Indian Ocean. Once reached the western boundary of the Indian Ocean, they were redirected back into interior Indian Ocean and propagating eastward as the downwelling Kelvin waves.

Overexpression of EAR1 and SSH4 that encode PPxY proteins in the multivesicular body provides stability to tryptophan permease Tat2, allowing yeast cells to grow under high hydrostatic pressure

NASA Astrophysics Data System (ADS)

Hiraki, Toshiki; Usui, Keiko; Abe, Fumiyoshi

2010-12-01

Tryptophan uptake in yeast Saccharomyces cerevisiae is susceptible to high hydrostatic pressure and it limits the growth of tryptophan auxotrophic (Trp-) strains under pressures of 15-25 MPa. The susceptibility of tryptophan uptake is accounted for by the pressure-induced degradation of tryptophan permease Tat2 occurring in a Rsp5 ubiquitin ligase-dependent manner. Ear1 and Ssh4 are multivesicular body proteins that physically interact with Rsp5. We found that overexpression of either of the EAR1 or SSH4 genes enabled the Trp- cells to grow at 15-25 MPa. EAR1 and SSH4 appeared to provide stability to the Tat2 protein when overexpressed. The result suggests that Ear1 and Ssh4 negatively regulate Rsp5 on ubiquitination of Tat2. Currently, high hydrostatic pressure is widely used in bioscience and biotechnology for structurally perturbing macromolecules such as proteins and lipids or in food processing and sterilizing microbes. We suggest that hydrostatic pressure is an operative experimental parameter to screen yeast genes specifically for regulation of Tat2 through the function of Rsp5 ubiquitin ligase.

Redox Signaling Regulated by Cysteine Persulfide and Protein Polysulfidation.

PubMed

Kasamatsu, Shingo; Nishimura, Akira; Morita, Masanobu; Matsunaga, Tetsuro; Abdul Hamid, Hisyam; Akaike, Takaaki

2016-12-15

For decades, reactive persulfide species including cysteine persulfide (CysSSH) have been known to exist endogenously in organisms. However, the physiological significance of endogenous persulfides remains poorly understood. That cystathionine β-synthase and cystathionine γ-lyase produced CysSSH from cystine was recently demonstrated. An endogenous sulfur transfer system involving CysSSH evidently generates glutathione persulfide (GSSH) that exists at concentrations greater than 100 μM in vivo. Because reactive persulfide species such as CysSSH and GSSH have higher nucleophilicity than parental cysteine (Cys) and glutathione do, these reactive species exhibit strong scavenging activities against oxidants, e.g., hydrogen peroxide, and electrophiles, which contributes to redox signaling regulation. Also, several papers indicated that various proteins and enzymes have Cys polysulfides including CysSSH at their specific Cys residues, which is called protein polysulfidation. Apart from the redox signaling regulatory mechanism, another plausible function of protein polysulfidation is providing protection for protein thiol residues against irreversible chemical modification caused by oxidants and electrophiles. Elucidation of the redox signaling regulatory mechanism of reactive persulfide species including small thiol molecules and thiol-containing proteins should lead to the development of new therapeutic strategies and drug discoveries for oxidative and electrophilic stress-related diseases.

Southern Ocean Eddy Heat Flux and Eddy-Mean Flow Interactions in Drake Passage

NASA Astrophysics Data System (ADS)

Foppert, Annie

The Antarctic Circumpolar Current (ACC) is a complex current system composed of multiple jets that is both unique to the world's oceans and relatively under observed compared with other current systems. Observations taken by current- and pressure-recording inverted echo sounders (CPIES) over four years, from November 2007 to November 2011, quantify the mean structure of one of the main jets of the ACC - the Polar Front - in a composite-mean sense. While the array of CPIES deployed in Drake Passage included a 3 x 7 local dynamics array, analysis of the Polar Front makes use of the line of CPIES that spanned the width of Drake Passage (C-Line). The Polar Front tends to prefer one of two locations, separated along the C-Line by 1° of latitude, with the core of the jet centered on corresponding geopotential height contours (with a 17 cm dierence between the northern and southern jets). Potential vorticity fields suggest that the Polar Front is susceptible to baroclinic instability, regardless of whether it is found upstream (farther south along the C-Line) or downstream (farther north along the C-Line) of the Shackleton Fracture Zone (SFZ), yet the core of the jet remains a barrier to smaller-scale mixing, as inferred from estimated mixing lengths. Within the local dynamics array of CPIES, the observed offset between eddy heat flux (EHF) and eddy kinetic energy (EKE) and the alignment of EHF with sea surface height (SSH) standard deviation motivates a proxy for depth-integrated EHF that can be estimated from available satellite SSH data. An eddy-resolving numerical model develops the statistics of a logarithmic fit between SSH standard deviation and cross-frontal EHF that is applied to the ACC in a circumglobal sense. We find 1.06 PW enters the ACC from the north and 0.02 PW exits towards Antarctica. The magnitude of the estimated EHF, along with contemporaneous estimates of the mean heat flux, suggests that the air-sea heat flux south of the PF is an overestimate. Long-term trends in EHF are calculated from January 1992 to December 2014 and reveal varying trends at the eight ACC EHF hot spots, with only three having statistically significant temporal trends of strengthening cross-frontal EHF. The dynamics of an oceanic storm track are investigated using CPIES observations in the local dynamics array to better understand the processes responsible for the spatial oset between EHF and EKE. Wave activity flux ( W), calculated from the total geostrophic stream-function, is used to diagnose eddy-mean flow interactions in the eddy-rich region immediately downstream of the SFZ. In the full four-year mean and in a composite of eddy events, elevated values of eddy potential energy (EPE) are aligned with the vertical component of W. This is indicative of a conversion of mean available potential energy to EPE through EHF associated with baroclinic instability. Emanating from this region, horizontal W vectors point towards the adjacent region of elevated EKE. A case study of an eddy event, lasting from 15 to 23 July 2010, is presented and highlights the capability of W to illustrate the evolution of the storm track in a snap-shot sense. While baroclinic processes initially dominate the event, the alignment of elevated values of EKE with the convergence of the horizontal W vectors indicates the importance of barotropic processes in transporting EKE away from the ACC's interaction with the SFZ.

Transport variability of the Brazil Current from observations and a data assimilation model

NASA Astrophysics Data System (ADS)

Schmid, Claudia; Majumder, Sudip

2018-06-01

The Brazil Current transports from observations and the Hybrid Coordinate Model (HYCOM) model are analyzed to improve our understanding of the current's structure and variability. A time series of the observed transport is derived from a three-dimensional field of the velocity in the South Atlantic covering the years 1993 to 2015 (hereinafter called Argo & SSH). The mean transports of the Brazil Current increases from 3.8 ± 2.2 Sv (1 Sv is 106 m3 s-1) at 25° S to 13.9 ± 2.6 Sv at 32° S, which corresponds to a mean slope of 1.4 ± 0.4 Sv per degree. Transport estimates derived from HYCOM fields are somewhat higher (5.2 ± 2.7 and 18.7 ± 7.1 Sv at 25 and 32° S, respectively) than those from Argo & SSH, but these differences are small when compared with the standard deviations. Overall, the observed latitude dependence of the transport of the Brazil Current is in agreement with the wind-driven circulation in the super gyre of the subtropical South Atlantic. A mean annual cycle with highest (lowest) transports in austral summer (winter) is found to exist at selected latitudes (24, 35, and 38° S). The significance of this signal shrinks with increasing latitude (both in Argo & SSH and HYCOM), mainly due to mesoscale and interannual variability. Both Argo & SSH, as well as HYCOM, reveal interannual variability at 24 and 35° S that results in relatively large power at periods of 2 years or more in wavelet spectra. It is found that the interannual variability at 24° S is correlated with the South Atlantic Subtropical Dipole Mode (SASD), the Southern Annular Mode (SAM), and the Niño 3.4 index. Similarly, correlations between SAM and the Brazil Current transport are also found at 35° S. Further investigation of the variability reveals that the first and second mode of a coupled empirical orthogonal function of the meridional transport and the sea level pressure explain 36 and 15 % of the covariance, respectively. Overall, the results indicate that SAM, SASD, and El Niño-Southern Oscillation have an influence on the transport of the Brazil Current.

Relationship between the Bering Strait Throughflow and Salinity in the Bering Sea in an Atmosphere-Ocean-Ice Coupled Model

NASA Astrophysics Data System (ADS)

Kawai, Y.; Osafune, S.; Masuda, S.; Komuro, Y.

2016-12-01

The relationship between the volumetric transport of the Bering Strait throughflow (BTF) and sea surface salinity (SSS) in the Bering Sea was investigated using an atmosphere-ocean-ice coupled model, MIROC4h, which includes an eddy-permitting ocean model. The MIROC4h simulated well the seasonal cycle of BTF transport, although it overestimated the transport compared with previous studies. The interannual variations of SSS in the Bering Sea were correlated with those of BTF transport: SSS in the northwestern Bering Sea was high when BTF transport was large. The SSS anomaly associated with the BTF anomaly became evident from late autumn to spring, and SSS lagged behind the BTF by a few months. The BTF transport was strongly correlated with the SSH in the eastern Bering Sea, the southwestern Chukchi Sea, and the East Siberian Sea. The low SSH along the Russian coast in the Arctic Ocean was uncorrelated with the high SSH in the Bering Sea. The Arctic SSH affected BTF transport and the SSS in the northwestern Bering Sea independently of the SSH in the Bering Sea. We evaluated the salt budget in the northwestern Bering Sea, including Anadyr Bay. When the BTF transport in October-March was large, the horizontal convergence of salt increased and sea-ice melting decreased; both changes contributed to the increase of salinity. In contrast, evaporation-minus-precipitation and the residual component had the opposite effect. The sea-ice retreat was closely related to meridional wind anomalies that also raised the SSH in the eastern Bering Sea. Changes in upper-layer currents caused by the southerly wind anomalies in the Bering Sea contributed to the increase of the horizontal convergence of salt. In addition, the SSH anomalies in the Arctic Ocean independently affected the currents in the Bering Strait and the northwestern Bering Sea, perhaps through the propagation of shelf waves, which also led to salinization.

Protein-phosphotyrosine proteome profiling by superbinder-SH2 domain affinity purification mass spectrometry, sSH2-AP-MS.

PubMed

Tong, Jiefei; Cao, Biyin; Martyn, Gregory D; Krieger, Jonathan R; Taylor, Paul; Yates, Bradley; Sidhu, Sachdev S; Li, Shawn S C; Mao, Xinliang; Moran, Michael F

2017-03-01

Recently, "superbinder" SH2 domain variants with three amino acid substitutions (sSH2) were reported to have 100-fold or greater affinity for protein-phosphotyrosine (pY) than natural SH2 domains. Here we report a protocol in which His-tagged Src sSH2 efficiently captures pY-peptides from protease-digested HeLa cell total protein extracts. Affinity purification of pY-peptides by this method shows little bias for pY-proximal amino acid sequences, comparable to that achieved by using antibodies to pY, but with equal or higher yield. Superbinder-SH2 affinity purification mass spectrometry (sSH2-AP-MS) therefore provides an efficient and economical approach for unbiased pY-directed phospho-proteome profiling without the use of antibodies. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Immune-Related Transcriptome of Coptotermes formosanus Shiraki Workers: The Defense Mechanism

PubMed Central

Hussain, Abid; Li, Yi-Feng; Cheng, Yu; Liu, Yang; Chen, Chuan-Cheng; Wen, Shuo-Yang

2013-01-01

Formosan subterranean termites, Coptotermes formosanus Shiraki, live socially in microbial-rich habitats. To understand the molecular mechanism by which termites combat pathogenic microbes, a full-length normalized cDNA library and four Suppression Subtractive Hybridization (SSH) libraries were constructed from termite workers infected with entomopathogenic fungi (Metarhizium anisopliae and Beauveria bassiana), Gram-positive Bacillus thuringiensis and Gram-negative Escherichia coli, and the libraries were analyzed. From the high quality normalized cDNA library, 439 immune-related sequences were identified. These sequences were categorized as pattern recognition receptors (47 sequences), signal modulators (52 sequences), signal transducers (137 sequences), effectors (39 sequences) and others (164 sequences). From the SSH libraries, 27, 17, 22 and 15 immune-related genes were identified from each SSH library treated with M. anisopliae, B. bassiana, B. thuringiensis and E. coli, respectively. When the normalized cDNA library was compared with the SSH libraries, 37 immune-related clusters were found in common; 56 clusters were identified in the SSH libraries, and 259 were identified in the normalized cDNA library. The immune-related gene expression pattern was further investigated using quantitative real time PCR (qPCR). Important immune-related genes were characterized, and their potential functions were discussed based on the integrated analysis of the results. We suggest that normalized cDNA and SSH libraries enable us to discover functional genes transcriptome. The results remarkably expand our knowledge about immune-inducible genes in C. formosanus Shiraki and enable the future development of novel control strategies for the management of Formosan subterranean termites. PMID:23874972

Increased actin polymerization and stabilization interferes with neuronal function and survival in the AMPKγ mutant Loechrig.

PubMed

Cook, Mandy; Bolkan, Bonnie J; Kretzschmar, Doris

2014-01-01

loechrig (loe) mutant flies are characterized by progressive neuronal degeneration, behavioral deficits, and early death. The mutation is due to a P-element insertion in the gene for the γ-subunit of the trimeric AMP-activated protein kinase (AMPK) complex, whereby the insertion affects only one of several alternative transcripts encoding a unique neuronal isoform. AMPK is a cellular energy sensor that regulates a plethora of signaling pathways, including cholesterol and isoprenoid synthesis via its downstream target hydroxy-methylglutaryl (HMG)-CoA reductase. We recently showed that loe interferes with isoprenoid synthesis and increases the prenylation and thereby activation of RhoA. During development, RhoA plays an important role in neuronal outgrowth by activating a signaling cascade that regulates actin dynamics. Here we show that the effect of loe/AMPKγ on RhoA prenylation leads to a hyperactivation of this signaling pathway, causing increased phosphorylation of the actin depolymerizating factor cofilin and accumulation of filamentous actin. Furthermore, our results show that the resulting cytoskeletal changes in loe interfere with neuronal growth and disrupt axonal integrity. Surprisingly, these phenotypes were enhanced by expressing the Slingshot (SSH) phosphatase, which during development promotes actin depolymerization by dephosphorylating cofilin. However, our studies suggest that in the adult SSH promotes actin polymerization, supporting in vitro studies using human SSH1 that suggested that SSH can also stabilize and bundle filamentous actin. Together with the observed increase in SSH levels in the loe mutant, our experiments suggest that in mature neurons SSH may function as a stabilization factor for filamentous actin instead of promoting actin depolymerization.

Large-Scale Oceanic Variability Associated with the Madden-Julian Oscillation during the CINDY/DYNAMO Field Campaign from Satellite Observations

DTIC Science & Technology

2013-04-29

during the field campaign. For the first time, it is demonstrated that subseasonal SSS variations in the central Indian Ocean can be monitored by Aquarius...westerlies were observed in both Northern and Southern Hemispheres in the central and eastern Indian Oceans. The anomalous SSH associated with strong...it is demonstrated that subseasonal SSS variations in the central Indian Ocean can be monitored by Aquarius measurements based on the comparison

Planning Continuing Education to Meet the Needs of Nurses: Diabetes Mellitus Programs.

ERIC Educational Resources Information Center

Heller, Debbie Ransom; Brown, Sylvia J.

1983-01-01

It is critical for nurses to be aware of changing treatment strategies and new research developments in the field of diabetes. This is important so that nurses can respond to patient questions as well as, in some cases, modify their actual patient care approach. Thus, nurses are a vital target group for diabetes continuing education programs. (SSH)

Processing of Tense Morphology and Filler-Gap Dependencies by Chinese Second Language Speakers of English

ERIC Educational Resources Information Center

Dong, Zhiyin Renee

2014-01-01

There is an ongoing debate in the field of Second Language Acquisition concerning whether a fundamental difference exists between the native language (L1) and adult second language (L2) online processing of syntax and morpho-syntax. The Shallow Structure Hypothesis (SSH) (Clahsen and Felser, 2006a, b) states that L2 online parsing is qualitatively…

Using ParaView Software on the Peregrine System | High-Performance

Science.gov Websites

come pre-installed on most Linux and Mac systems. On Windows the ssh and terminal functions are provided by the programs plink.exe and cmd.exe, of which only cmd.exe will come pre-installed. The ssh

Subtractive transcriptome analysis of leaf and rhizome reveals differentially expressed transcripts in Panax sokpayensis.

PubMed

Gurung, Bhusan; Bhardwaj, Pardeep K; Talukdar, Narayan C

2016-11-01

In the present study, suppression subtractive hybridization (SSH) strategy was used to identify rare and differentially expressed transcripts in leaf and rhizome tissues of Panax sokpayensis. Out of 1102 randomly picked clones, 513 and 374 high quality expressed sequenced tags (ESTs) were generated from leaf and rhizome subtractive libraries, respectively. Out of them, 64.92 % ESTs from leaf and 69.26 % ESTs from rhizome SSH libraries were assembled into different functional categories, while others were of unknown function. In particular, ESTs encoding galactinol synthase 2, ribosomal RNA processing Brix domain protein, and cell division cycle protein 20.1, which are involved in plant growth and development, were most abundant in the leaf SSH library. Other ESTs encoding protein KIAA0664 homologue, ubiquitin-activating enzyme e11, and major latex protein, which are involved in plant immunity and defense response, were most abundant in the rhizome SSH library. Subtractive ESTs also showed similarity with genes involved in ginsenoside biosynthetic pathway, namely farnesyl pyrophosphate synthase, squalene synthase, and dammarenediol synthase. Expression profiles of selected ESTs validated the quality of libraries and confirmed their differential expression in the leaf, stem, and rhizome tissues. In silico comparative analyses revealed that around 13.75 % of unigenes from the leaf SSH library were not represented in the available leaf transcriptome of Panax ginseng. Similarly, around 18.12, 23.75, 25, and 6.25 % of unigenes from the rhizome SSH library were not represented in available root/rhizome transcriptomes of P. ginseng, Panax notoginseng, Panax quinquefolius, and Panax vietnamensis, respectively, indicating a major fraction of novel ESTs. Therefore, these subtractive transcriptomes provide valuable resources for gene discovery in P. sokpayensis and would complement the available transcriptomes from other Panax species.

Real-time Assimilation of Altimeter Derived Synthetic Profiles Into a Global version of the Naval Research Laboratory's Coastal Ocean Model (NCOM)

NASA Astrophysics Data System (ADS)

Rhodes, R. C.; Barron, C. N.; Fox, D. N.; Smedstad, L. F.

2001-12-01

A global implementation of the Navy Coastal Ocean Model (NCOM), developed by the Naval Research Laboratory (NRL) at Stennis Space Center is currently running in real-time and is planned for transition to the Naval Oceanographic Office (NAVOCEANO) in 2002. The model encompasses the open ocean to 5 m depth on a curvilinear global model grid with 1/8 degree grid spacing at 45N, extending from 80 S to a complete arctic cap with grid singularities mapped into Canada and Russia. Vertically, the model employs 41 sigma-z levels with sigma in the upper-ocean and coastal regions and z in the deeper ocean. The Navy Operational Global Atmospheric Prediction System (NOGAPS) provides 6-hourly wind stresses and heat fluxes for forcing, while the operational Modular Ocean Data Assimilation System (MODAS) provides the background climatology and tools for data pre-processing. Operationally available sea surface temperature (SST) and altimetry (SSH) data are assimilated into the NAVOCEANO global 1/8 degree MODAS 2-D analysis and the 1/16 degree Navy Layered Ocean Model (NLOM) to provide analyses and forecasts of SSH and SST. The 2-D SSH and SST nowcast fields are used as input to the MODAS synthetic climatology database to yield three-dimensional fields of synthetic temperature and salinity for assimilation into global NCOM. The synthetic profiles are weighted higher at depth in the assimilation process to allow the numerical model to properly develop the mixed-layer structure driven by the real-time atmospheric forcing. Global NCOM nowcasts and forecasts provide a valuable resource for rapid response to the varied and often unpredictable operational requests for 3-dimensional fields of ocean temperature, salinity, and currents. In some cases, the resolution of the global product is sufficient for guidance. In cases requiring higher resolution, the global product offers a quick overview of local circulation and provides initial and boundary conditions for higher resolution coastal models that may be more specialized for a particular task or domain. Nowcast and forecast results are presented globally and in selected areas of interest and model results are compared with historical and concurrent observations and analyses.

High rate GPS positioning , JASON altimetry and marine gravimetry : monitoring the Antarctic Circumpolar Current (ACC) through the DRAKE campaigns.

NASA Astrophysics Data System (ADS)

Melachroinos, S. A.; Biancale, R.; Menard, Y.; Sarrailh, M.

2008-12-01

The Drake campaign which took place from Jan 14, 2006 - 08 Feb, 2006 has been a very successful mission in collecting a wide range of GPS and marine gravity data all along JASON altimetry ground track n° 104. The same campaign will be repeated in 2009 along 028 and 104 JASON-2 ground track. The Drake Passage (DP) chokepoint is not only well suited geographically, as the Antarctic Circumpolar Current (ACC) is constricted to its narrowest extent of 700 km, but observations and models suggest that dynamical balances are particular effective in this area. Furthermore the space geodesy observations and their products provided from several altimetry missions (currently operating ENVISAT, JASON 1 and 2, GFO, ERS and other plannified for the future such as Altika, SWOT) require the cross comparison with independent geodetic techniques at the DP. The current experiment comprises a kinematic GPS and marine gravimetry Cal/Val geodetic approach and it aims to : validate with respect to altimetry data and surface models such a kinematic high frequency GPS technique for measuring sea state and sea surface height (SSH), compare the GPS SSH profiles with altimetry mean dynamic topography (MDT) and mean sea surface (MSS) models, give recommendations for future "offshore" Cal/Val activities on the ground tracks of altimeter satellites such as JASON-2, GFO, Altika using the GNSS technology etc. The GPS observations are collected from GPS antennas installed on a wave-rider buoy , aboard the R/V "Polarstern" and from continuous geodetic reference stations in the proximity. We also analyse problems related to the ship's attitude variations in roll, pitch and yaw and a way to correct them. We also give emphasis on the impact of the ship's acceleration profiles on the so called "squat effect" and ways to deal with it. The project will in particular benefit the GOCE mission by proposing to integrate GOCE in the ocean circulation study and validate GOCE products with our independent geodetic data set. The high rate GPS SSH solutions are derived using two different GPS kinematic software, GINS (CNES) and TRACK (MIT).

A Preliminary Assessment of the S-3A SRAL Performances in SAR Mode

NASA Astrophysics Data System (ADS)

Dinardo, Salvatore; Scharroo, Remko; Bonekamp, Hans; Lucas, Bruno; Loddo, Carolina; Benveniste, Jerome

2016-08-01

The present work aims to assess and characterize the S3-A SRAL Altimeter performance in closed-loop tracking mode and in open ocean conditions. We have processed the Sentinel-3 SAR data products from L0 until L2 using an adaptation of the ESRIN GPOD CryoSat-2 Processor SARvatore.During the Delay-Doppler processing, we have chosen to activate the range zero-padding option.The L2 altimetric geophysical parameters, that are to be validated, are the sea surface height above the ellipsoid (SSH), sea level anomaly (SLA), the significant wave height (SWH) and wind speed (U10), all estimated at 20 Hz.The orbit files are the POD MOE, while the geo- corrections are extracted from the RADS database.In order to assess the accuracy of the wave&wind products, we have been using an ocean wave&wind speed model output (wind speed at 10 meter high above the sea surface) from the ECMWF.We have made a first order approximation of the sea state bias as -4.7% of the SWH.In order to assess the precision performance of SRAL SAR mode, we compute the level of instrumental noise (range, wave height and wind speed) for different conditions of sea state.

Broadening our View of the MOC using Satellite Altimetry and Two Moored Arrays in the Atlantic: MOVE 16N and RAPID 26N

NASA Astrophysics Data System (ADS)

Duchez, A.; Frajka-Williams, E.; Lankhorst, M. J.; Koelling, J.; Send, U.

2016-02-01

The Atlantic meridional overturning circulation (MOC) carries heat northwards in the top 1000m of the Atlantic, with a deep, cold return flow below. Climate simulations predict a slowing of the AMOC in the coming years, while present day observations from boundary arrays demonstrate substantial variability on weekly- to interannual timescales. Using simultaneous observations from the MOVE 16N and RAPID 26N arrays in the Atlantic, we investigate transport and property variability. On long timescales, the tendencies in deep densities are similar between the two latitudes (towards lighter water in the west), resulting in a change in the thermal wind balance across the Atlantic. This tendency is punctuated by a more abrupt change in late 2009 at 26N and 7 months later at 16N. In situ arrays such as RAPID 26N and MOVE 16N provide detailed depth structure of transport variability, but are necessarily limited to individual latitudes. Using satellite altimetry, we show that the sea surface height (SSH) anomalies in the western half of the Atlantic covary with in situ transport estimates on interannual timescales. We use satellite altimetry to extend estimates of depth-integrated ocean transports back in time to 1993, then investigate how the spatial pattern of SSH variability broadens our view of Atlantic MOC structure beyond individual latitudes. This analysis investigates two decade+ long time series of ocean transports, and complements the findings with satellite observations.

A programmable, multichannel power supply for SIPMs with temperature compensation loop and Ethernet interface

NASA Astrophysics Data System (ADS)

Querol, M.; Rodríguez, J.; Toledo, J.; Esteve, R.; Álvarez, V.; Herrero, V.

2016-12-01

Among the different techniques available, the SiPM power supply described in this paper uses output voltage and sensor temperature feedback. A high-resolution ADC digitizes both the output voltage and an analog signal proportional to the SiPM temperature for each of its 16 independent outputs. The appropriate change in the bias voltage is computed in a micro-controller and this correction is applied via a high resolution DAC to the control input of a DC/DC module that produces the output voltage. This method allows a reduction in gain variations from typically 30% to only 0.5% in a 10 °C range. The power supply is housed in a 3U-height aluminum box. A 2.8'' touch screen on the front panel provides local access to the configuration and monitoring functions using a graphical interface. The unit has an Ethernet interface on its rear side to provide remote operation and integration in slow control systems using the encrypted and secure SSH protocol. A LabVIEW application with SSH interface has been designed to operate the power supply from a remote computer. The power supply has good characteristics, such as 85 V output range with 1 mV resolution and stability better than 2 mVP, excellent output load regulation and programmable rise and fall voltage ramps. Commercial power supplies from well-known manufacturers can show far better specifications though can also result in an over featured and over costly solution for typical applications.

Deep Ocean Warming Assessed from Altimeters, GRACE, 3 In-situ Measurements, and a Non-Boussinesq OGCM

NASA Technical Reports Server (NTRS)

Song, Y. Tony; Colberg, Frank

2011-01-01

Observational surveys have shown significant oceanic bottom water warming, but they are too spatially and temporally sporadic to quantify the deep ocean contribution to the present-day sea level rise (SLR). In this study, altimetry sea surface height (SSH), Gravity Recovery and Climate Experiment (GRACE) ocean mass, and in situ upper ocean (0-700 m) steric height have been assessed for their seasonal variability and trend maps. It is shown that neither the global mean nor the regional trends of altimetry SLR can be explained by the upper ocean steric height plus the GRACE ocean mass. A non-Boussinesq ocean general circulation model (OGCM), allowing the sea level to rise as a direct response to the heat added into the ocean, is then used to diagnose the deep ocean steric height. Constrained by sea surface temperature data and the top of atmosphere (TOA) radiation measurements, the model reproduces the observed upper ocean heat content well. Combining the modeled deep ocean steric height with observational upper ocean data gives the full depth steric height. Adding a GRACE-estimated mass trend, the data-model combination explains not only the altimetry global mean SLR but also its regional trends fairly well. The deep ocean warming is mostly prevalent in the Atlantic and Indian oceans, and along the Antarctic Circumpolar Current, suggesting a strong relation to the oceanic circulation and dynamics. Its comparison with available bottom water measurements shows reasonably good agreement, indicating that deep ocean warming below 700 m might have contributed 1.1 mm/yr to the global mean SLR or one-third of the altimeter-observed rate of 3.11 +/- 0.6 mm/yr over 1993-2008.

Universities and Smart Specialisation Strategy: From Third Mission to Sustainable Development Co-Creation

ERIC Educational Resources Information Center

Rinaldi, Chiara; Cavicchi, Alessio; Spigarelli, Francesca; Lacchè, Luigi; Rubens, Arthur

2018-01-01

Purpose: The paper analyses the emerging role of Social Sciences and Humanities (SSH) universities in contemporary society via third- and fourth-mission activities. In particular, the paper investigates the potential contributions that SSH universities can offer in developing and enhancing capacities, supporting the changing conception of…

SSH reveals a linkage between a senescence-associated protease and Verticillium wilt symptom development in lettuce (Lactuca sativa)

USDA-ARS?s Scientific Manuscript database

Suppression subtractive hybridization (SSH) was employed to identify lettuce (Lactuca sativa) genes that are differentially expressed in symptomatic leaves infected with Verticillium dahliae. Genes expressed only in symptomatic leaves included those with homology to pathogenesis-related (PR) protei...

SSh versus TSE sequence protocol in rapid MR examination of pediatric patients with programmable drainage system.

PubMed

Brichtová, Eva; Šenkyřík, J

2017-05-01

A low radiation burden is essential during diagnostic procedures in pediatric patients due to their high tissue sensitivity. Using MR examination instead of the routinely used CT reduces the radiation exposure and the risk of adverse stochastic effects. Our retrospective study evaluated the possibility of using ultrafast single-shot (SSh) sequences and turbo spin echo (TSE) sequences in rapid MR brain imaging in pediatric patients with hydrocephalus and a programmable ventriculoperitoneal drainage system. SSh sequences seem to be suitable for examining pediatric patients due to the speed of using this technique, but significant susceptibility artifacts due to the programmable drainage valve degrade the image quality. Therefore, a rapid MR examination protocol based on TSE sequences, less sensitive to artifacts due to ferromagnetic components, has been developed. Of 61 pediatric patients who were examined using MR and the SSh sequence protocol, a group of 15 patients with hydrocephalus and a programmable drainage system also underwent TSE sequence MR imaging. The susceptibility artifact volume in both rapid MR protocols was evaluated using a semiautomatic volumetry system. A statistically significant decrease in the susceptibility artifact volume has been demonstrated in TSE sequence imaging in comparison with SSh sequences. Using TSE sequences reduced the influence of artifacts from the programmable valve, and the image quality in all cases was rated as excellent. In all patients, rapid MR examinations were performed without any need for intravenous sedation or general anesthesia. Our study results strongly suggest the superiority of the TSE sequence MR protocol compared to the SSh sequence protocol in pediatric patients with a programmable ventriculoperitoneal drainage system due to a significant reduction of susceptibility artifact volume. Both rapid sequence MR protocols provide quick and satisfactory brain imaging with no ionizing radiation and a reduced need for intravenous or general anesthesia.

Investigating Auditory Processing of Syntactic Gaps with L2 Speakers Using Pupillometry

ERIC Educational Resources Information Center

Fernandez, Leigh; Höhle, Barbara; Brock, Jon; Nickels, Lyndsey

2018-01-01

According to the Shallow Structure Hypothesis (SSH), second language (L2) speakers, unlike native speakers, build shallow syntactic representations during sentence processing. In order to test the SSH, this study investigated the processing of a syntactic movement in both native speakers of English and proficient late L2 speakers of English using…

Experiments in interdisciplinarity: Responsible research and innovation and the public good

PubMed Central

Åm, Heidrun

2018-01-01

In Europe, responsible research and innovation (RRI) has emerged as a science policy measure that demands the early integration of a broad range of social actors and perspectives into research and development (R&D). More collaboration of the social sciences and humanities (SSH) with science and engineering appears within this policy framework as a crucial element that will enable better technological development. However, RRI is new to both natural scientists and SSH scholars, and interdisciplinary collaborations are challenging for many reasons. In this paper, we discuss these challenges while suggesting that what RRI can be in a particular project is not a given but remains an empirical question. Natural scientists and SSH scholars need to coresearch RRI in an experimental mode. PMID:29579043

Experiments in interdisciplinarity: Responsible research and innovation and the public good.

PubMed

Delgado, Ana; Åm, Heidrun

2018-03-01

In Europe, responsible research and innovation (RRI) has emerged as a science policy measure that demands the early integration of a broad range of social actors and perspectives into research and development (R&D). More collaboration of the social sciences and humanities (SSH) with science and engineering appears within this policy framework as a crucial element that will enable better technological development. However, RRI is new to both natural scientists and SSH scholars, and interdisciplinary collaborations are challenging for many reasons. In this paper, we discuss these challenges while suggesting that what RRI can be in a particular project is not a given but remains an empirical question. Natural scientists and SSH scholars need to coresearch RRI in an experimental mode.

1/32° real-time global ocean prediction and value-added over 1/16° resolution

NASA Astrophysics Data System (ADS)

Shriver, J. F.; Hurlburt, H. E.; Smedstad, O. M.; Wallcraft, A. J.; Rhodes, R. C.

2007-03-01

A 1/32° global ocean nowcast/forecast system has been developed by the Naval Research Laboratory at the Stennis Space Center. It started running at the Naval Oceanographic Office in near real-time on 1 Nov. 2003 and has been running daily in real-time since 1 Mar. 2005. It became an operational system on 6 March 2006, replacing the existing 1/16° system which ceased operation on 12 March 2006. Both systems use the NRL Layered Ocean Model (NLOM) with assimilation of sea surface height from satellite altimeters and sea surface temperature from multi-channel satellite infrared radiometers. Real-time and archived results are available online at http://www.ocean.nrlssc.navy.mil/global_nlom. The 1/32° system has improvements over the earlier system that can be grouped into two categories: (1) better resolution and representation of dynamical processes and (2) design modifications. The design modifications are the result of accrued knowledge since the development of the earlier 1/16° system. The improved horizontal resolution of the 1/32° system has significant dynamical benefits which increase the ability of the model to accurately nowcast and skillfully forecast. At the finer resolution, current pathways and their transports become more accurate, the sea surface height (SSH) variability increases and becomes more realistic and even the global ocean circulation experiences some changes (including inter-basin exchange). These improvements make the 1/32° system a better dynamical interpolator of assimilated satellite altimeter track data, using a one-day model forecast as the first guess. The result is quantitatively more accurate nowcasts, as is illustrated by several model-data comparisons. Based on comparisons with ocean color imagery in the northwestern Arabian Sea and the Gulf of Oman, the 1/32° system has even demonstrated the ability to map small eddies, 25-75 km in diameter, with 70% reliability and a median eddy center location error of 22.5 km, a surprising and unanticipated result from assimilation of altimeter track data. For all of the eddies (50% small eddies), the reliability was 80% and the median eddy center location error was 29 km. The 1/32° system also exhibits improved forecast skill in relation to the 1/16° system. This is due to ( a) a more accurate initial condition for the forecast and ( b) better resolution and representation of critical dynamical processes (such as upper ocean - topographic coupling via mesoscale flow instabilities) which allow the model to more accurately evolve these features in time while running in forecast mode (forecast atmospheric forcing for the first 5 days, then gradually reverting toward climatology for the remainder of the 30-day forecast period). At 1/32° resolution, forecast SSH generally compares better with unassimilated observations and the anomaly correlation of the forecast SSH exceeds that from persistence by a larger amount than found in the 1/16° system.

Mapping distribution of Rastrelliger kanagurta in the exclusive economic zone (EEZ) of Malaysia using maximum entropy modeling approach

NASA Astrophysics Data System (ADS)

Yusop, Syazwani Mohd; Mustapha, Muzzneena Ahmad

2018-04-01

The coupling of fishing locations for R. kanagurta obtained from SEAFDEC and multi-sensor satellite imageries of oceanographic variables; sea surface temperature (SST), sea surface height (SSH) and chl-a concentration (chl-a) were utilized to evaluate the performance of maximum entropy (MaxEnt) models for R. kanagurta fishing ground for prediction. Besides, this study was conducted to identify the relative percentage contribution of each environmental variable considered in order to describe the effects of the oceanographic factors on the species distribution in the study area. The potential fishing grounds during intermonsoon periods; April and October 2008-2009 were simulated separately and covered the near-coast of Kelantan, Terengganu, Pahang and Johor. The oceanographic conditions differed between regions by the inherent seasonal variability. The seasonal and spatial extents of potential fishing grounds were largely explained by chl-a concentration (0.21-0.99 mg/m3 in April and 0.28-1.00 mg/m3 in October), SSH (77.37-85.90 cm in April and 107.60-108.97 cm in October) and SST (30.43-33.70 °C in April and 30.48-30.97 °C in October). The constructed models were applicable and therefore they were suitable for predicting the potential fishing zones of R. kanagurta in EEZ. The results from this study revealed MaxEnt's potential for predicting the spatial distribution of R. kanagurta and highlighted the use of multispectral satellite images for describing the seasonal potential fishing grounds.

Comparison of Measurements from Pressure-recording Inverted Echo Sounders and Satellite Altimetry in the North Equatorial Current Region of the Western Pacific

NASA Astrophysics Data System (ADS)

Jeon, Chanhyung; Park, Jae-Hun; Kim, Dong Guk; Kim, Eung; Jeon, Dongchull

2018-04-01

An array of 5 pressure-recording inverted echo sounders (PIESs) was deployed along the Jason-2 214 ground track in the North Equatorial Current (NEC) region of the western Pacific Ocean for about 2 years from June 2012. Round-trip acoustic travel time from the bottom to the sea surface and bottom pressure measurements from PIES were converted to sea level anomaly (SLA). AVISO along-track mono-mission SLA (Mono-SLA), reference mapped SLA (Ref-MSLA), and up-to-date mapped SLA (Upd-MSLA) products were used for comparison with PIESderived SLA (η tot). Comparisons of η tot with Mono-SLA revealed that hump artifact errors significantly contaminate the Mono-SLA. Differences of η tot from both Ref-MSLA and Upd-MSLA decreased as the hump errors were reduced in mapped SLA products. Comparisons of Mono-SLA measurements at crossover points of ground tracks near the observation sites revealed large differences though the time differences of their measurements were only 1.53 and 4.58 days. Comparisons between Mono-SLA and mapped SLA suggested that mapped SLA smooths out the hump artifact errors by taking values between the two discrepant Mono-SLA measurements at the crossover points. Consequently, mapped SLA showed better agreement with η tot at our observation sites. AVISO mapped sea surface height (SSH) products are the preferable dataset for studying SSH variability in the NEC region of the western Pacific, though some portions of hump artifact errors seem to still remain in them.

Low-frequency western Pacific Ocean sea level and circulation changes due to the connectivity of the Philippine Archipelago

NASA Astrophysics Data System (ADS)

Zhuang, Wei; Qiu, Bo; Du, Yan

2013-12-01

Interannual-to-decadal sea level and circulation changes associated with the oceanic connectivity around the Philippine Archipelago are studied using satellite altimeter sea surface height (SSH) data and a reduced gravity ocean model. SSHs in the tropical North Pacific, the Sulu Sea and the eastern South China Sea (ESCS) display very similar low-frequency oscillations that are highly correlated with El Niño and Southern Oscillation. Model experiments reveal that these variations are mainly forced by the low-frequency winds over the North Pacific tropical gyre and affected little by the winds over the marginal seas and the North Pacific subtropical gyre. The wind-driven baroclinic Rossby waves impinge on the eastern Philippine coast and excite coastal Kelvin waves, conveying the SSH signals through the Sibutu Passage-Mindoro Strait pathway into the Sulu Sea and the ESCS. Closures of the Luzon Strait, Karimata Strait, and ITF passages have little impacts on the low-frequency sea level changes in the Sulu Sea and the ESCS. The oceanic pathway west of the Philippine Archipelago modulates the western boundary current system in the tropical North Pacific. Opening of this pathway weakens the time-varying amplitudes of the North Equatorial Current bifurcation latitude and Kuroshio transport. Changes of the amplitudes can be explained by the conceptual framework of island rule that allows for baroclinic adjustment. Although it fails to capture the interannual changes in the strongly nonlinear Mindanao Current, the time-dependent island rule is nevertheless helpful in clarifying the role of the archipelago in regulating its multidecadal variations.

Decadal variations of Pacific North Equatorial Current bifurcation from multiple ocean products

NASA Astrophysics Data System (ADS)

Zhai, Fangguo; Wang, Qingye; Wang, Fujun; Hu, Dunxin

2014-02-01

In this study, we examine the decadal variations of the Pacific North Equatorial Current (NEC) bifurcation latitude (NBL) averaged over upper 100 m and underlying dynamics over the past six decades using 11 ocean products, including seven kinds of ocean reanalyzes based on ocean data assimilation systems, two kinds of numerical simulations without assimilating observations and two kinds of objective analyzes based on in situ observations only. During the period of 1954-2007, the multiproduct mean of decadal NBL anomalies shows maxima around 1965/1966, 1980/1981, 1995/1996, and 2003/2004, and minima around 1958, 1971/1972, 1986/1987, and 2000/2001, respectively. The NBL decadal variations are related to the first Empirical Orthogonal Function mode of decadal anomalies of sea surface height (SSH) in the northwestern tropical Pacific Ocean, which shows spatially coherent variation over the whole region and explains most of the total variance. Further regression and composite analyzes indicate that northerly/southerly NBL corresponds to negative/positive SSH anomalies and cyclonic/anticyclonic gyre anomalies in the northwestern tropical Pacific Ocean. These decadal circulation variations and thus the decadal NBL variations are governed mostly by the first two vertical modes and attribute the most to the first baroclinic mode. The NBL decadal variation is highly positively correlated with the tropical Pacific decadal variability (TPDV) around the zero time lag. With a lead of about half the decadal cycle the NBL displays closer but negative relationship to TPDV in four ocean products, possibly manifesting the dynamical role of the circulation in the northwestern tropical Pacific in the phase-shifting of TPDV.

On the Flow of Atlantic Water Towards the Arctic Ocean; a Synergy Between Altimetry and Hydrography.

NASA Astrophysics Data System (ADS)

Chafik, L.; Nilsson, J.; Skagseth, O.; Lundberg, P.

2015-12-01

The Arctic climate is strongly influenced by the inflow of warm Atlantic water conveyed by the Norwegian Atlantic Slope Current (NwASC); the main heat conveyor into the Arctic Ocean. Based on sea surface height (SSH) data from altimetry, we develop a dynamical measure of the NwASC transport to diagnose its spatio-temporal variability. This supports a dynamical division of the NwASC into two flow regimes; the Svinøy Branch (SvB) in the Norwegian Sea, and the Fram Strait Branch (FSB) west of Spitsbergen. The SvB transport is well correlated with the SSH and atmospheric variability within the Nordic Seas, factors that also affect the inflow to the Barents Sea. In contrast, the FSB is regulated by regional atmospheric patterns around Svalbard and northern Barents Sea. We further relate anomalous flow events to temperature fluctuations of Atlantic water. A warm anomaly is found to propagate northwards, with a tendency to amplify enroute, after events of strong flow in the Norwegian Sea. A roughly 12-months delayed temperature signal is identified in the FSB. This suggests that hydrographic anomalies both upstream from the North Atlantic, and locally generated in the Norwegian Sea, are important for the oceanic heat and salt transport that eventually enters into the Arctic. We believe that the combination of the flow from altimetry and temperature fluctuations in the Nordic Seas can be used to qualitatively predict warm anomalies towards the Arctic Ocean, which could be a valuable addition to the forecast skill of the statistical Arctic sea-ice models.

The Influence of the Terrestrial Reference Frame on Studies of Sea Level Change

NASA Astrophysics Data System (ADS)

Nerem, R. S.; Bar-Sever, Y. E.; Haines, B. J.; Desai, S.; Heflin, M. B.

2015-12-01

The terrestrial reference frame (TRF) provides the foundation for the accurate monitoring of sea level using both ground-based (tide gauges) and space-based (satellite altimetry) techniques. For the latter, tide gauges are also used to monitor drifts in the satellite instruments over time. The accuracy of the terrestrial reference frame (TRF) is thus a critical component for both types of sea level measurements. The TRF is central to the formation of geocentric sea-surface height (SSH) measurements from satellite altimeter data. The computed satellite orbits are linked to a particular TRF via the assumed locations of the ground-based tracking systems. The manner in which TRF errors are expressed in the orbit solution (and thus SSH) is not straightforward, and depends on the models of the forces underlying the satellite's motion. We discuss this relationship, and provide examples of the systematic TRF-induced errors in the altimeter derived sea-level record. The TRF is also crucial to the interpretation of tide-gauge measurements, as it enables the separation of vertical land motion from volumetric changes in the water level. TRF errors affect tide gauge measurements through GNSS estimates of the vertical land motion at each tide gauge. This talk will discuss the current accuracy of the TRF and how errors in the TRF impact both satellite altimeter and tide gauge sea level measurements. We will also discuss simulations of how the proposed Geodetic Reference Antenna in SPace (GRASP) satellite mission could reduce these errors and revolutionize how reference frames are computed in general.

Deception Using an SSH Honeypot

DTIC Science & Technology

2017-09-01

the device itself but also the device’s cloud and mobile infrastructure. This increase in unsecured devices connected to the Internet presents...have SSH enabled on their systems without knowledge that this service is running. Computer -security professionals use several techniques to gain...early 2000s. Honeypots are decoy computer systems intended for no other purpose than to collect data on attackers. They gather information about

Bismarck or Beveridge: a beauty contest between dinosaurs

PubMed Central

van der Zee, Jouke; Kroneman, Madelon W

2007-01-01

Background Health systems delivery systems can be divided into two broad categories: National Health Services (NHS) on the one hand and Social Security (based) Health care systems (SSH) on the other hand. Existing literature is inconclusive about which system performs best. In this paper we would like to improve the evidence-base for discussion about pros and cons of NHS-systems versus SSH-system for health outcomes, expenditure and population satisfaction. Methods In this study we used time series data for 17 European countries, that were characterized as either NHS or SSH country. We used the following performance indicators: For health outcome: overall mortality rate, infant mortality rate and life expectancy at birth. For health care costs: health care expenditure per capita in pppUS$ and health expenditure as percentage of GDP. Time series dated from 1970 until 2003 or 2004, depending on availability. Sources were OECD health data base 2006 and WHO health for all database 2006. For satisfaction we used the Eurobarometer studies from 1996, 1998 and 1999. Results SSH systems perform slightly better on overall mortality rates and life expectancy (after 1980). For infant mortality the rates converged between the two types of systems and since 1980 no differences ceased to exist. SSH systems are more expensive and NHS systems have a better cost containment. Inhabitants of countries with SSH-systems are on average substantially more satisfied than those in NHS countries. Conclusion We concluded that the question 'which type of system performs best' can be answered empirically as far as health outcomes, health care expenditures and patient satisfaction are concerned. Whether this selection of indicators covers all or even most relevant aspects of health system comparison remains to be seen. Perhaps further and more conclusive research into health system related differences in, for instance, equity should be completed before the leading question of this paper can be answered. We do think, however, that this study can form a base for a policy debate on the pros and cons of the existing health care systems in Europe. PMID:17594476

Gene Expression Profiling in the Thiamethoxam Resistant and Susceptible B-biotype Sweetpotato Whitefly, Bemisia tabaci

PubMed Central

Xie, Wen; Yang, Xin; Wang, Shao-Ii; Wu, Qing-jun; Yang, Ni-na; Li, Ru-mei; Jiao, Xiaoguo; Pan, Hui-peng; Liu, Bai-ming; Feng, Yun-tao; Xu, Bao-yun; Zhou, Xu-guo; Zhang, You-jun

2012-01-01

Thiamethoxam has been used as a major insecticide to control the B-biotype sweetpotato whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae). Due to its excessive use, a high level of resistance to thiamethoxam has developed worldwide over the past several years. To better understand the molecular mechanisms underlying this resistance in B. tabaci, gene profiles between the thiamethoxam-resistant and thiamethoxam-susceptible strains were investigated using the suppression subtractive hybridization (SSH) library approach. A total of 72 and 52 upand down-regulated genes were obtained from the forward and reverse SSH libraries, respectively. These expressed sequence tags (ESTs) belong to several functional categories based on their gene ontology annotation. Some categories such as cell communication, response to abiotic stimulus, lipid particle, and nuclear envelope were identified only in the forward library of thiamethoxam-resistant strains. In contrast, categories such as behavior, cell proliferation, nutrient reservoir activity, sequence-specific DNA binding transcription factor activity, and signal transducer activity were identified solely in the reverse library. To study the validity of the SSH method, 16 differentially expressed genes from both forward and reverse SSH libraries were selected randomly for further analyses using quantitative realtime PCR (qRT-PCR). The qRT-PCR results were fairly consistent with the SSH results; however, only 50% of the genes showed significantly different expression profiles between the thiamethoxam-resistant and thiamethoxam-susceptible whiteflies. Among these genes, a putative NAD-dependent methanol dehydrogenase was substantially over-expressed in the thiamethoxamresistant adults compared to their susceptible counterparts. The distributed profiles show that it was highly expressed during the egg stage, and was most abundant in the abdomen of adult females. PMID:22957505

Molecular characterization of infectious bursal disease virus isolates from Nepal based on hypervariable region of VP2 gene.

PubMed

Sharma, K; Hair-Bejo, M; Omar, A R; Aini, I

2005-01-01

Two Infectious bursal disease virus (IBDV) isolates, NP1SSH and NP2K were obtained from a severe infectious bursal disease (IBD) outbreak in Nepal in 2002. The hypervariable (HV) region of VP2 gene (1326 bp) of the isolates was generated by RT-PCR and sequenced. The obtained nucleotide sequences were compared with those of twenty other IBDV isolates/strains. Phylogenetic analysis based on this comparison revealed that NP1SSH and NP2K clustered with very virulent (vv) IBDV strains of serotype 1. In contrast, classical, Australian classical and attenuated strains of serotype 1 and avirulent IBDV strains of serotype 2 formed a different cluster. The deduced amino acid sequences of the two isolates showed a 98.3% identity with each other and 97.1% and 98.3% identities, respectively with very virulent IBDV (vvIBDV) isolates/strains. Three amino acids substitutions at positions 300 (E-->A), 308 (I-->F) and 334 (A-->P) within the HV region were common for both the isolates. The amino acids substitutions at positions 27 (S-->T), 28 (I-->T), 31 (D-->A), 36 (H-->Y), 135 (E-->G), 223 (G-->S), 225 (V-->I), 351 (L-->I), 352 (V-->E) and 399 (I-->S) for NP1SSH and at position 438 (I-->S) for NP2K were unique and differed from other IBDV isolates/strains. NP1SSH and NP2K showed highest similarity (97.8%) with the BD399 strain from Bangladesh as compared with other vvIBDV isolates/strains. We conclude that the NP1SSH and NP2K isolates of IBDV from Nepal represent vvIBDV of serotype 1.

Globus File Transfer Services | High-Performance Computing | NREL

Science.gov Websites

Account To get a Globus account, sign up on the Globus account website. To get access to the NREL endpoint continue. Use the Globus credentials you used to register your Globus.org account. Go to the Transfer Files Globus.org account to allow ssh CLI access To use the CLI you must have a Globus account with ssh access

Nested high resolution models for the coastal areas of the North Indian Ocean

NASA Astrophysics Data System (ADS)

Wobus, Fred; Shapiro, Georgy

2017-04-01

Oceanographic processes at coastal scales require much higher horizontal resolution from both ocean models and observations as compared to deep water oceanography. Aside from a few exceptions such as land-locked seas, the hydrodynamics of coastal shallow waters is strongly influenced by the tides, which in turn control the mixing, formation of temperature fronts and other phenomena. The numerical modelling of the coastal domains requires good knowledge of the lateral boundary conditions. The application of lateral boundary conditions to ocean models is a notoriously tricky task, but can only be avoided with global ocean models. Smaller scale regional ocean models are typically nested within global models, and even smaller-scale coastal models may be nested within regional models, creating a nesting chain. However a direct nesting of a very high resolution coastal model into a coarse resolution global model results in degrading of the accuracy of the outputs due to the large difference between the model resolutions. This is why a nesting chain has to be applied, so that every increase in resolution is kept within a reasonable minimum (typically by a factor of 3 to 5 at each step). Global models are traditionally non-tidal, so at some stage of the nesting chain the tides need to be introduced. This is typically done by calculating the tidal constituents from a dedicated tidal model (e.g. TPXO) for all boundary points of a nested model. The tidal elevation at each boundary location can then be calculated from the harmonics at every model time step and the added to the parent model non-tidal SSH. This combination of harmonics-derived tidal SSH and non-tidal parent model SSH is typically applied to the nested domain using the Flather condition, together with the baroclinic velocities from the parent model. The harmonics-derived SSH cannot be added to an SSH signal that is already tidal, so the parent model SSH has to be either detided or taken from a non-tidal model. Due to the lack of effective detiding methods and the prevailing view that harmonics-derived SSH provide a cleaner tidal signal over the SSH taken from a tidal parent model it has traditionally only been the last model in a nesting chain that is tidal. But to our knowledge these assumptions haven't been sufficiently tested and need to be re-visited. Furthermore, the lack of tides in the larger-scale regional models limits their capability and we would like to push for a nesting chain where all regional models (including the intermediate ones) are tidal. In this study we have conducted a number of numerical experiments where we have tested whether a tidal regional model can effectively force a tidal nested model without resorting to detiding techniques and the use of a dedicated tidal model such as TPXO. We have tested whether it's possible to use a tidal parent model and use the total SSH (combined geostrophic SSH and tidal component) to force the child model at the boundary. We call this strategy "tidal nesting" as opposed to TPXO tidal forcing which is used in "traditional nesting". For our experiments we have developed 2 models based on the same NEMO 3.6 codebase. The medium resolution AS20 model covers the Arabian Sea at 1/20 ̊ with 50 layers using a hybrid s-on-top-of-z vertical discretisation scheme (Shapiro et al., 2013); and the high resolution AG60 model covers the Arabian/Persian Gulf at 1/60 ̊ with 50 layers. The AS20 model is "traditionally" nested within the UK Met Office non-tidal large-scale Indian Ocean model at 1/12 ̊ resolution and tidal constituents at the boundary are taken from the TPXO7.2 Global Tidal Solution. Our "tidal nesting" experiments use different forcing frequencies at which the tidal SSH is fed from the larger-scale AS20 into the smaller-scale AG60 model. These strategies are compared with "traditional nesting" where the inner AG60 uses boundary conditions from a non-tidal AS20 parent model and tides are computed from TPXO harmonics. The results reveal an optimal tidal nesting strategy which forces tidal SSH from the parent model at 1-hourly intervals whilst non-tidal parameters are forced at 24-hourly intervals. The analysis includes comparisons with tidal gauges in the Gulf of Oman and inside the Arabian Gulf. The accuracy of tides inside the Gulf is inhibited by the narrow Straits of Hormuz, and tidal nesting doesn't achieve the same level of agreement with observation as traditional nesting. We also found that a further increase in the SSH forcing frequency to 30 minutes does not further improve the results. The forcing at intervals of 1h/24h for tidal/non-tidal parameters shows that a 2-step tidal nesting chain is viable and thus tides can be represented in more than just the last model of a nesting chain. References: Shapiro, G., Luneva, M., Pickering, J., and Storkey, D.: The effect of various vertical discretization schemes and horizontal diffusion parameterization on the performance of a 3-D ocean model: the Black Sea case study, Ocean Sci., 9, 377-390, doi:10.5194/os-9-377-2013, 2013.

Ensemble data assimilation in the Red Sea: sensitivity to ensemble selection and atmospheric forcing

NASA Astrophysics Data System (ADS)

Toye, Habib; Zhan, Peng; Gopalakrishnan, Ganesh; Kartadikaria, Aditya R.; Huang, Huang; Knio, Omar; Hoteit, Ibrahim

2017-07-01

We present our efforts to build an ensemble data assimilation and forecasting system for the Red Sea. The system consists of the high-resolution Massachusetts Institute of Technology general circulation model (MITgcm) to simulate ocean circulation and of the Data Research Testbed (DART) for ensemble data assimilation. DART has been configured to integrate all members of an ensemble adjustment Kalman filter (EAKF) in parallel, based on which we adapted the ensemble operations in DART to use an invariant ensemble, i.e., an ensemble Optimal Interpolation (EnOI) algorithm. This approach requires only single forward model integration in the forecast step and therefore saves substantial computational cost. To deal with the strong seasonal variability of the Red Sea, the EnOI ensemble is then seasonally selected from a climatology of long-term model outputs. Observations of remote sensing sea surface height (SSH) and sea surface temperature (SST) are assimilated every 3 days. Real-time atmospheric fields from the National Center for Environmental Prediction (NCEP) and the European Center for Medium-Range Weather Forecasts (ECMWF) are used as forcing in different assimilation experiments. We investigate the behaviors of the EAKF and (seasonal-) EnOI and compare their performances for assimilating and forecasting the circulation of the Red Sea. We further assess the sensitivity of the assimilation system to various filtering parameters (ensemble size, inflation) and atmospheric forcing.

Modes of Arctic Ocean Change from GRACE, ICESat and the PIOMAS and ECCO2 Models of the Arctic Ocean

NASA Astrophysics Data System (ADS)

Peralta Ferriz, C.; Morison, J. H.; Bonin, J. A.; Chambers, D. P.; Kwok, R.; Zhang, J.

2012-12-01

EOF analysis of month-to-month variations in GRACE derived Arctic Ocean bottom pressure (OBP) with trend and seasonal variation removed yield three dominant modes. The first mode is a basin wide variation in mass associated with high atmospheric pressure (SLP) over Scandinavia mainly in winter. The second mode is a shift of mass from the central Arctic Ocean to the Siberian shelves due to low pressure over the basins, associated with the Arctic Oscillation. The third mode is a shift in mass between the Eastern and Western Siberian shelves, related to strength of the Beaufort High mainly in summer, and to eastward alongshore winds on the Barents Sea in winter. The PIOMAS and ECCO2 modeled OBP show fair agreement with the form of these modes and provide context in terms of variations in sea surface height SSH. Comparing GRACE OBP from 2007 to 2011 with GRACE OBP from 2002 to 2006 reveals a rising trend over most of the Arctic Ocean but declines in the Kara Sea region and summer East Siberian Sea. ECCO2 bears a faint resemblance to the observed OBP change but appears to be biased negatively. In contrast, PIOMAS SSH and ECCO2 especially, show changes between the two periods that are muted but similar to ICESat dynamic ocean topography and GRACE-ICESat freshwater trends from 2005 through 2008 [Morison et al., 2012] with a rising DOT and freshening in the Beaufort Sea and a trough with decreased freshwater on the Russian side of the Arctic Ocean. Morison, J., R. Kwok, C. Peralta-Ferriz, M. Alkire, I. Rigor, R. Andersen, and M. Steele (2012), Changing Arctic Ocean freshwater pathways, Nature, 481(7379), 66-70.

Modeling Monthly Spatial Distribution of Ommastrephes bartramii CPUE in the Northwest Pacific and Its Spatially Nonstationary Relationships with the Marine Environment

NASA Astrophysics Data System (ADS)

Feng, Yongjiu; Liu, Yang; Chen, Xinjun

2018-06-01

There are substantial spatial variations in the relationships between catch-per-unit-effort (CPUE) and oceanographic conditions with respect to pelagic species. This study examines the monthly spatiotemporal distribution of CPUE of the neon flying squid, Ommastrephes bartramii, in the Northwest Pacific from July to November during 2004-2013, and analyzes the relationships with oceanographic conditions using a generalized additive model (GAM) and geographically weighted regression (GWR) model. The results show that most of the squids were harvested in waters with sea surface temperature (SST) between 7.6 and 24.6°C, chlorophyll- a (Chl- a) concentration below 1.0 mg m-3, sea surface salinity (SSS) between 32.7 and 34.6, and sea surface height (SSH) between -12.8 and 28.4 cm. The monthly spatial distribution patterns of O. bartramii predicted using GAM and GWR models are similar to observed patterns for all months. There are notable variations in the local coefficients of GWR, indicating the presence of spatial non-stationarity in the relationship between O. bartramii CPUE and oceanographic conditions. The statistical results show that there were nearly equal positive and negative coefficients for Chl- a, more positive than negative coefficients for SST, and more negative than positive coefficients for SSS and SSH. The overall accuracies of the hot spots predicted by GWR exceed 60% (except for October), indicating a good performance of this model and its improvement over GAM. Our study provides a better understanding of the ecological dynamics of O. bartramii CPUE and makes it possible to use GWR to study the spatially nonstationary characteristics of other pelagic species.

The Kuroshio Extension low-frequency variability analyzed with altimeter data through an ad hoc composite index

NASA Astrophysics Data System (ADS)

Pierini, Stefano; Gentile, Vittorio; de Ruggiero, Paola; Pietranera, Luca

2017-04-01

The Kuroshio Extension (KE) low-frequency variability (LFV) is analyzed with the satellite altimeter data distributed by AVISO from January 1993 to November 2015 through a new ad hoc composite index [1] that links the mean latitudinal position L of the KE jet and an integrated wavelet amplitude A measuring the high-frequency variability (HFV) of the KE path. This approach allows one to follow the KE evolution as an orbit in the (L,A) plane, as typically done in dynamical systems theory. Three intervals, I1 (1993-1998), I2 (1998-2006) and I3 (2006-November 2015) are separately analyzed also with sea surface height (SSH) maps. In I1 and I3, L and A are mostly anti-correlated and a recharging phase (characterized by a weak convoluted jet experiencing a rapid increase of the HFV) begins when negative SSH anomalies, remotely generated by the Pacific Decadal Oscillation, reach the KE region. On the other hand, in I2 the KE evolution is described by a hysteresis loop: this starts with a weak jet state followed by a recharging phase leading, in turn, to a persistent two-meander state, to its progressive and rapid erosion and, eventually, to the reestablishment of a weak jet state. This loop is found to correspond quite closely to the highly nonlinear intrinsic relaxation oscillation obtained in numerical process studies [1,2]. This supports the hypothesis that the KE LFV may have been controlled, during I2, by an intrinsic oceanic mode of variability. [1] Pierini S., 2015. J. Climate, 28, 5873-5881. [2] Pierini S., 2006. J. Phys. Oceanogr., 36, 1605-1625.

Relationship between Ocean Bottom Pressure Variations and Baroclinic Eddy off Kushiro-Tokachi

NASA Astrophysics Data System (ADS)

Hasegawa, T.; Nagano, A.; Matsumoto, H.; Ariyoshi, K.

2016-02-01

The scope of this study is to reveal relationships between ocean bottom pressure (BP) variations related to ocean plate changes, and oceanic climate changes. We analyzed BP data at stations PG1 (41.7040N-144.4375E) and PG2 (42.2365N-144.8454E) obtained from the Long-Term Deep Sea Floor Observatory off Kushiro-Tokachi in the Kuril Trench, gridded daily sea surface height (SSH) data provided by AVISO, and conductivity-temperature-depth (CTD) data at a repeated observation line off Akkeshi (A-line) from 2004 to 2013. In addition, we used Nino-3 index, which is the major index for El Nino/Southern Oscillation (ENSO) and is given by the CPC/NOAA. It is suggested that SSH at PG1 and PG2 similarly vary affected by the Oyashio, the western boundary current of the North Pacific subarctic gyre, and El Nino events in 2006 and 2007 via atmospheric telconnections. BP time series at PG1 and PG2 are almost in phase in most of the analysis period, but from the early 2006 to the end of 2007, are quit discrepant in amplitude; at that occasion, BP at PG1 is much higher than that at PG2. Expecting a peculiar hydrographic feature at the occasion, CTD data along the A-line in January 2007 are analyzed. A lenticular eddy was found to exist in a layer between 1500 and 3000 dbar and to deepen substantially isopycnals of approximately 27.7 sigma-theta around a depth of 2000 dbar. Probably due to the baroclinic eddy feature, BP is kept low at PG2, while high at PG1. The subthermocline water occupying the deep eddy are considered not to be originated in the North Pacific but to be derived from the Southern Ocean.

Nuclear Matrix Proteins in Disparity of Prostate Cancer

DTIC Science & Technology

2011-07-01

using G3PDH 3’ primer and PCR primer 1 followed by two rounds of hybridization. In the first hybridization, the RsaI-digested driver cDNA was mixed...determined using β-actin to confirm the reduced relative abundance of the housekeeping gene after SSH. The SSH nested PCR products were cloned using pCR®2.1...variability of DNA concentration. Additionally, negative and positive controls ( housekeeping genes) from the Ambion™ ArrayControls™ Set were included

Reporting Errors in Siblings’ Survival Histories and Their Impact on Adult Mortality Estimates: Results From a Record Linkage Study in Senegal

PubMed Central

Helleringer, Stéphane; Pison, Gilles; Kanté, Almamy M.; Duthé, Géraldine; Andro, Armelle

2014-01-01

Estimates of adult mortality in countries with limited vital registration (e.g., sub-Saharan Africa) are often derived from information about the survival of a respondent’s siblings. We evaluated the completeness and accuracy of such data through a record linkage study conducted in Bandafassi, located in southeastern Senegal. We linked at the individual level retrospective siblings’ survival histories (SSH) reported by female respondents (n = 268) to prospective mortality data and genealogies collected through a health and demographic surveillance system (HDSS). Respondents often reported inaccurate lists of siblings. Additions to these lists were uncommon, but omissions were frequent: respondents omitted 3.8 % of their live sisters, 9.1 % of their deceased sisters, and 16.6 % of their sisters who had migrated out of the DSS area. Respondents underestimated the age at death of the siblings they reported during the interview, particularly among siblings who had died at older ages (≥45 years). Restricting SSH data to person-years and events having occurred during a recent reference period reduced list errors but not age and date errors. Overall, SSH data led to a 20 % underestimate of 45q15 relative to HDSS data. Our study suggests new quality improvement strategies for SSH data and demonstrates the potential use of HDSS data for the validation of “unconventional” demographic techniques. PMID:24493063

Reporting errors in siblings' survival histories and their impact on adult mortality estimates: results from a record linkage study in Senegal.

PubMed

Helleringer, Stéphane; Pison, Gilles; Kanté, Almamy M; Duthé, Géraldine; Andro, Armelle

2014-04-01

Estimates of adult mortality in countries with limited vital registration (e.g., sub-Saharan Africa) are often derived from information about the survival of a respondent's siblings. We evaluated the completeness and accuracy of such data through a record linkage study conducted in Bandafassi, located in southeastern Senegal. We linked at the individual level retrospective siblings' survival histories (SSH) reported by female respondents (n = 268) to prospective mortality data and genealogies collected through a health and demographic surveillance system (HDSS). Respondents often reported inaccurate lists of siblings. Additions to these lists were uncommon, but omissions were frequent: respondents omitted 3.8 % of their live sisters, 9.1 % of their deceased sisters, and 16.6 % of their sisters who had migrated out of the DSS area. Respondents underestimated the age at death of the siblings they reported during the interview, particularly among siblings who had died at older ages (≥45 years). Restricting SSH data to person-years and events having occurred during a recent reference period reduced list errors but not age and date errors. Overall, SSH data led to a 20 % underestimate of 45 q 15 relative to HDSS data. Our study suggests new quality improvement strategies for SSH data and demonstrates the potential use of HDSS data for the validation of "unconventional" demographic techniques.

Suppressive subtractive hybridization approach revealed differential expression of hypersensitive response and reactive oxygen species production genes in tea (Camellia sinensis (L.) O. Kuntze) leaves during Pestalotiopsis thea infection.

PubMed

Senthilkumar, Palanisamy; Thirugnanasambantham, Krishnaraj; Mandal, Abul Kalam Azad

2012-12-01

Tea (Camellia sinensis (L.) O. Kuntze) is an economically important plant cultivated for its leaves. Infection of Pestalotiopsis theae in leaves causes gray blight disease and enormous loss to the tea industry. We used suppressive subtractive hybridization (SSH) technique to unravel the differential gene expression pattern during gray blight disease development in tea. Complementary DNA from P. theae-infected and uninfected leaves of disease tolerant cultivar UPASI-10 was used as tester and driver populations respectively. Subtraction efficiency was confirmed by comparing abundance of β-actin gene. A total of 377 and 720 clones with insert size >250 bp from forward and reverse library respectively were sequenced and analyzed. Basic Local Alignment Search Tool analysis revealed 17 sequences in forward SSH library have high degree of similarity with disease and hypersensitive response related genes and 20 sequences with hypothetical proteins while in reverse SSH library, 23 sequences have high degree of similarity with disease and stress response-related genes and 15 sequences with hypothetical proteins. Functional analysis indicated unknown (61 and 59 %) or hypothetical functions (23 and 18 %) for most of the differentially regulated genes in forward and reverse SSH library, respectively, while others have important role in different cellular activities. Majority of the upregulated genes are related to hypersensitive response and reactive oxygen species production. Based on these expressed sequence tag data, putative role of differentially expressed genes were discussed in relation to disease. We also demonstrated the efficiency of SSH as a tool in enriching gray blight disease related up- and downregulated genes in tea. The present study revealed that many genes related to disease resistance were suppressed during P. theae infection and enhancing these genes by the application of inducers may impart better disease tolerance to the plants.

Effects of Sacubitril/Valsartan (LCZ696) on Natriuresis, Diuresis, Blood Pressures, and NT-proBNP in Salt-Sensitive Hypertension.

PubMed

Wang, Tzung-Dau; Tan, Ru-San; Lee, Hae-Young; Ihm, Sang-Hyun; Rhee, Moo-Yong; Tomlinson, Brian; Pal, Parasar; Yang, Fan; Hirschhorn, Elizabeth; Prescott, Margaret F; Hinder, Markus; Langenickel, Thomas H

2017-01-01

Salt-sensitive hypertension (SSH) is characterized by impaired sodium excretion and subnormal vasodilatory response to salt loading. Sacubitril/valsartan (LCZ696) was hypothesized to increase natriuresis and diuresis and result in superior blood pressure control compared with valsartan in Asian patients with SSH. In this randomized, double-blind, crossover study, 72 patients with SSH received sacubitril/valsartan 400 mg and valsartan 320 mg once daily for 4 weeks each. SSH was diagnosed if the mean arterial pressure increased by ≥10% when patients switched from low (50 mmol/d) to high (320 mmol/d) sodium diet. The primary outcome was cumulative 6- and 24-hour sodium excretion after first dose administration. Compared with valsartan, sacubitril/valsartan was associated with a significant increase in natriuresis (adjusted treatment difference: 24.5 mmol/6 hours, 50.3 mmol/24 hours, both P<0.001) and diuresis (adjusted treatment difference: 291.2 mL/6 hours, P<0.001; 356.4 mL/24 hours, P=0.002) on day 1, but not on day 28, and greater reductions in office and ambulatory blood pressure on day 28. Despite morning dosing of both drugs, ambulatory blood pressure reductions were more pronounced at nighttime than at daytime or the 24-hour average. Compared with valsartan, sacubitril/valsartan significantly reduced N-terminal pro B-type natriuretic peptide levels on day 28 (adjusted treatment difference: -20%; P=0.001). Sacubitril/valsartan and valsartan were safe and well tolerated with no significant changes in body weight or serum sodium and potassium levels with either treatments. In conclusion, sacubitril/valsartan compared with valsartan was associated with short-term increases in natriuresis and diuresis, superior office and ambulatory blood pressure control, and significantly reduced N-terminal pro B-type natriuretic peptide levels in Asian patients with SSH. URL: http://www.clinicaltrials.gov. Unique identifier: NCT01681576. © 2016 American Heart Association, Inc.

On Verifying Currents and Other Features in the Hawaiian Islands Region Using Fully Coupled Ocean/Atmosphere Mesoscale Prediction System Compared to Global Ocean Model and Ocean Observations

NASA Astrophysics Data System (ADS)

Jessen, P. G.; Chen, S.

2014-12-01

This poster introduces and evaluates features concerning the Hawaii, USA region using the U.S. Navy's fully Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS-OS™) coupled to the Navy Coastal Ocean Model (NCOM). It also outlines some challenges in verifying ocean currents in the open ocean. The system is evaluated using in situ ocean data and initial forcing fields from the operational global Hybrid Coordinate Ocean Model (HYCOM). Verification shows difficulties in modelling downstream currents off the Hawaiian islands (Hawaii's wake). Comparing HYCOM to NCOM current fields show some displacement of small features such as eddies. Generally, there is fair agreement from HYCOM to NCOM in salinity and temperature fields. There is good agreement in SSH fields.

Neural network-based estimates of Southern Ocean net community production from in-situ and satellite observation: A methodological study

NASA Astrophysics Data System (ADS)

Chang, C.; Johnson, N. C.; Cassar, N.

2012-12-01

Although the Southern Ocean (SO) net community production (NCP), which is the difference between gross primary production and the community respiration rate, plays an important role in the global carbon cycle, limited in situ measurements prohibit a thorough understanding of the climatology and variability NCP in this region. In order to achieve a more comprehensive characterization of temporal and spatial variability of Southern Ocean NCP, we use a neural network approach based on the self-organizing map (SOM) to reconstruct weekly gridded (1o x 1o) SO NCP maps for the period of 1998-2009. This approach combines in situ measurements of NCP from over 40 research cruises with satellite-derived NCP predictor data, which includes chlorophyll (Chl), particulate organic carbon (POC), photosynthetically available radiation (PAR), sea surface height (SSH), and sea surface temperature (SST), as well as the mixed layer depth (MLD) from a high-resolution ocean general circulation model forced with satellite observed wind. The resulting NCP reconstructions reveal a number of salient features, including low NCP in the subtropics except near land masses, elevated NCP along the subtropical front (STF) around 40oS and especially off the Atlantic coast of the South America between the Río de la Plata and the Falkland Island, and moderate NCP values near Kerguelen Islands and along the Antarctic coast. Peak SO NCP occurs during November - January, as expected, and the climatological NCP field during the growing season closely resembles the climatological POC field. This neural network approach, which reveals complex nonlinear relationships and readily handles missing predictor data, provides a comprehensive view of SO NCP and an opportunity to investigate variability over a period of more than ten years. Convergence of various approaches;

An SSH key management system: easing the pain of managing key/user/account associations

NASA Astrophysics Data System (ADS)

Arkhipkin, D.; Betts, W.; Lauret, J.; Shiryaev, A.

2008-07-01

Cyber security requirements for secure access to computing facilities often call for access controls via gatekeepers and the use of two-factor authentication. Using SSH keys to satisfy the two factor authentication requirement has introduced a potentially challenging task of managing the keys and their associations with individual users and user accounts. Approaches for a facility with the simple model of one remote user corresponding to one local user would not work at facilities that require a many-to-many mapping between users and accounts on multiple systems. We will present an SSH key management system we developed, tested and deployed to address the many-to-many dilemma in the environment of the STAR experiment. We will explain its use in an online computing context and explain how it makes possible the management and tracing of group account access spread over many sub-system components (data acquisition, slow controls, trigger, detector instrumentation, etc.) without the use of shared passwords for remote logins.

California serogroup and Powassan virus infection of cats.

PubMed

Keane, D P; Parent, J; Little, P B

1987-08-01

One hundred and seventy five sera from cats in Ontario, Canada, were tested for hemagglutination inhibition (HI) antibodies to three arboviruses; namely, Powassan (POW) of the Flavivirus serogroup, and Snowshoe hare (SSH) and Jamestown Canyon (JC) viruses of the California (CAL) serogroup. All sera were negative for antibodies to POW virus. Twelve cats possessed CAL serogroup antibodies including 3 with antibodies to SSH alone, 6 with antibodies to JC alone, and 3 with antibodies to both SSH and JC antigens. POW virus was inoculated into seven cats, one intracerebrally and six intravenously. Neurologic signs were not detected in any of the cats. Histologic lesions of a nonsuppurative encephalitis and encephalomyelitis were observed in the intracerebrally inoculated cat and in one of the intravenously inoculated cats, respectively. POW virus was not isolated from the brain or spinal cord of either of these two cats. HI antibodies were detected in the sera of all inoculated animals. HI antibodies were not detected in the CSF of any animal.

Analysis of Differentially Expressed Genes Associated with Coronatine-Induced Laticifer Differentiation in the Rubber Tree by Subtractive Hybridization Suppression

PubMed Central

Zhang, Shi-Xin; Wu, Shao-Hua; Chen, Yue-Yi; Tian, Wei-Min

2015-01-01

The secondary laticifer in the secondary phloem is differentiated from the vascular cambia of the rubber tree (Hevea brasiliensis Muell. Arg.). The number of secondary laticifers is closely related to the rubber yield potential of Hevea. Pharmacological data show that jasmonic acid and its precursor linolenic acid are effective in inducing secondary laticifer differentiation in epicormic shoots of the rubber tree. In the present study, an experimental system of coronatine-induced laticifer differentiation was developed to perform SSH identification of genes with differential expression. A total of 528 positive clones were obtained by blue-white screening, of which 248 clones came from the forward SSH library while 280 clones came from the reverse SSH library. Approximately 215 of the 248 clones and 171 of the 280 clones contained cDNA inserts by colony PCR screening. A total of 286 of the 386 ESTs were detected to be differentially expressed by reverse northern blot and sequenced. Approximately 147 unigenes with an average length of 497 bp from the forward and 109 unigenes with an average length of 514 bp from the reverse SSH libraries were assembled and annotated. The unigenes were associated with the stress/defense response, plant hormone signal transduction and structure development. It is suggested that Ca2+ signal transduction and redox seem to be involved in differentiation, while PGA and EIF are associated with the division of cambium initials for COR-induced secondary laticifer differentiation in the rubber tree. PMID:26147807

Using OpenSSH to secure mobile LAN network traffic

NASA Astrophysics Data System (ADS)

Luu, Brian B.; Gopaul, Richard D.

2002-08-01

Mobile Internet Protocol (IP) Local Area Network (LAN) is a technique, developed by the U.S. Army Research Laboratory, which allows a LAN to be IP mobile when attaching to a foreign IP-based network and using this network as a means to retain connectivity to its home network. In this paper, we describe a technique that uses Open Secure Shell (OpenSSH) software to ensure secure, encrypted transmission of a mobile LAN's network traffic. Whenever a mobile LAN, implemented with Mobile IP LAN, moves to a foreign network, its gateway (router) obtains an IP address from the new network. IP tunnels, using IP encapsulation, are then established from the gateway through the foreign network to a home agent on its home network. These tunnels provide a virtual two-way connection to the home network for the mobile LAN as if the LAN were connected directly to its home network. Hence, when IP mobile, a mobile LAN's tunneled network traffic must traverse one or more foreign networks that may not be trusted. This traffic could be subject to eavesdropping, interception, modification, or redirection by malicious nodes in these foreign networks. To protect network traffic passing through the tunnels, OpenSSH is used as a means of encryption because it prevents surveillance, modification, and redirection of mobile LAN traffic passing across foreign networks. Since the software is found in the public domain, is available for most current operating systems, and is commonly used to provide secure network communications, OpenSSH is the software of choice.

Tumor necrosis factor-α, kidney function, and hypertension.

PubMed

Mehaffey, Eamonn; Majid, Dewan S A

2017-10-01

Hypertension is considered to be a low-grade inflammatory condition characterized by the presence of various proinflammatory cytokines. Tumor necrosis factor-α (TNF-α) is a constituent of the proinflammatory cytokines that is associated with salt-sensitive hypertension (SSH) and related renal injury. Elevated angiotensin II (ANG II) and other factors such as oxidative stress conditions promote TNF-α formation. Many recent studies have provided evidence that TNF-α exerts a direct renal action by regulating hemodynamic and excretory function in the kidney. The cytokine incites a strong natriuretic response and plays a part in regulation of the intrarenal renin-angiotensin system. The exact mechanistic role of TNF-α in the development of SSH is as yet poorly understood. While TNF-α antagonism has been shown to attenuate hypertensive responses in many hypertensive animal models, contrasting findings demonstrate that the direct systemic administration of TNF-α usually induces hypotensive as well as natriuretic responses, indicating a counterregulatory role of TNF-α in SSH. Differential activities of two cell surface receptors of TNF-α (receptor type 1 and type 2) may explain the contradictory functions of TNF-α in the setting of hypertension. This short review will evaluate ongoing research studies that investigate the action of TNF-α within the kidney and its role as an influential pathophysiological variable in the development of SSH and renal injury. This information may help to develop specific TNF-α receptor targeting as an effective treatment strategy in this clinical condition. Copyright © 2017 the American Physiological Society.

Interdisciplinary promises versus practices in medicine: the decoupled experiences of social sciences and humanities scholars.

PubMed

Albert, Mathieu; Paradis, Elise; Kuper, Ayelet

2015-02-01

This paper explores social scientists' and humanities (SSH) scholars' integration within the academic medical research environment. Three questions guided our investigation: Do SSH scholars adapt to the medical research environment? How do they navigate their career within a culture that may be inconsistent with their own? What strategies do they use to gain legitimacy? The study builds on three concepts: decoupling, doxa, and epistemic habitus. Twenty-nine semi-structured interviews were conducted with SSH scholars working in 11 faculties of medicine across Canada. Participants were selected through purposeful and snowball sampling. The data were analyzed by thematic content analysis. For most of our participants, moving into medicine has been a challenging experience, as their research practices and views of academic excellence collided with those of medicine. In order to achieve some level of legitimacy more than half of our participants altered their research practices. This resulted in a dissonance between their internalized appreciation of academic excellence and their new, altered, research practices. Only six participants experienced no form of challenge or dissonance after moving into medicine, while three decided to break with their social science and humanities past and make the medical research community their new home. We conclude that the work environment for SSH scholars in faculties of medicine does not deliver on the promise of inclusiveness made by calls for interdisciplinarity in Canadian health research. Copyright © 2014 Elsevier Ltd. All rights reserved.

Implementation of Wetting and Drying in NCOM: Description and Validation Test Report

DTIC Science & Technology

2015-08-04

is mainly affected by the amplitude of the tides and the amount of “set down” of the SSH caused by the winds . The amount of set up or set down at the...coast depends on the strength and direction of the winds and the shape of the local coastline and bathymetry. For example, the gradient of the SSH...between the mouth and head of a bay is approximately proportional to the distance between the mouth and the head of the bay and the magnitude of the wind

1/32 Degree Real-Time Global Ocean Prediction and Value-Added Over 1/16 Degree Resolution

DTIC Science & Technology

2007-07-30

SSH ridge to the south of these eddies are captured by at least one of the two data narrowing the trough, both assisting in cutting off eddy...In Section 3.4, the off from a GFO track a week later (Fig. 3D). Eddy #12 Hawaiian Islands region is used to compare results where was already...Journal of Marine Systems 65 (2007) 3-26 13 The second example is the cluster of 6 small eddies week leading up to 29 Sept. This formed an SSH trough

Repeated psychological stress-induced alterations of visceral sensitivity and colonic motor functions in mice: influence of surgery and postoperative single housing on visceromotor responses.

PubMed

Larauche, Muriel; Gourcerol, Guillaume; Million, Mulugeta; Adelson, David W; Taché, Yvette

2010-07-01

Visceral pain modulation by chronic stress in mice has been little studied. Electromyography (EMG) recording of abdominal muscle contractions, as a proxy to the visceromotor response (VMR), requires electrode implantation and post-surgical single housing (SH) which could affect the VMR to stress. To test this hypothesis, male mice had electrode implantation surgery (S) plus SH, or no surgery and were group housed (NS-GH) or single housed (NS-SH) and exposed to either water avoidance stress (WAS, 1 h/day) or left undisturbed in their home cages for 10 days. The VMR to phasic ascending colorectal distension (CRD) was assessed before (basal) and 24 h after 10 days of WAS or no stress using a surgery-free method of intraluminal colonic pressure (ICP) recording (solid-state manometry). WAS heightened significantly the VMR to CRD at 30, 45, and 60 mmHg in S-SH vs. NS-GH, but not compared to NS-SH conscious mice. Compared to basal CRD, WAS increased VMR at 60 mmHg in the S-SH group and decreased it at 30-60 mmHg in NS-GH mice, while having no effect in NS-SH mice. The average defecation during the hour of repeated WAS over 10 days was 1.9 and 2.4 fold greater in S-SH vs. NS-GH and NS-SH mice, respectively. These data indicate that the combination of S-SH required for VMR monitoring with EMG is an important component of repeated WAS-induced post-stress visceral hypersensitivity and defecation in mice.

Role of Western Hemisphere Warm Pool in Rapid Climate Changes over the Western North Pacific

NASA Astrophysics Data System (ADS)

Kug, Jong-Seong; Park, Jae-Heung; An, Soon-Il

2017-04-01

Oceanic states over the western North Pacific (WNP), which is surrounded by heavily populated countries, are closely tied to the lives of the people in East Asia in regards to both climate and socioeconomics. As global warming continues, remarkable increases in sea surface temperature (SST) and sea surface height (SSH) have been observed in the WNP in recent decades. Here, we show that the SST increase in the western hemisphere warm pool (WHWP), which is the second largest warm pool on the globe, has contributed considerably to the rapid surface warming and sea level rise in the WNP via its remote teleconnection along the Pacific Intertropical Convergence Zone (ITCZ). State-of-the-art climate models strongly support the role of the WHWP not only on interannual time sales but also in long-term climate projections. We expect that understanding the processes initiated by the WHWP-SST could permit better forecasts of western North Pacific climate and the further development of the socioeconomics of East Asia.

Charge and energy transports via poly-phenylacetylene based dendrimers

NASA Astrophysics Data System (ADS)

Shin, Yongwoo; Li, Minghai; Lin, Xi

2010-03-01

Poly-Phenylacetylene (PPA) is widely used in photoconductivity, photoluminescence, and light harvesting applications. In this work, we investigate the charge and exciton transport energetics and mechanisms in the PPA-based dendrimers using our recently developed adapted Su-Schrieffer-Heeger (SSH) model Hamiltonians and ab initio Hartree-Fock (HF) calculations. We found both doping and photo-excitation lead to the formation of optical phonon dressed pi electron states, namely the self-localized polarons, in the energy gap. Independent from their origins, these polarons can be self-trapped at multiple lattice locations along the PPA chain, and migrate from one to the next with an activation barrier of ˜0.006 eV, slightly higher than the corresponding barrier found in trans-polyacetylene. The PPA-based dendrimers can be constructed via the meta-positions of phenyl rings. In this case, we found the dendrimer junctions form attractive potential wells for both polarons and excitons, and the width and height of these junction potential wells can be controlled by the geometry of the dendrimers.

The Rise of GNSS Reflectometry for Earth Remote Sensing

NASA Technical Reports Server (NTRS)

Zuffada, Cinzia; Li, Zhijin; Nghiem, Son V.; Lowe, Steve; Shah, Rashmi; Clarizia, Maria Paola; Cardellach, Estel

2015-01-01

The Global Navigation Satellite System (GNSS) reflectometry, i.e. GNSS-R, is a novel remote-sensing technique first published in that uses GNSS signals reflected from the Earth's surface to infer its surface properties such as sea surface height (SSH), ocean winds, sea-ice coverage, vegetation, wetlands and soil moisture, to name a few. This communication discusses the scientific value of GNSS-R to (a) furthering our understanding of ocean mesoscale circulation toward scales finer than those that existing nadir altimeters can resolve, and (b) mapping vegetated wetlands, an emerging application that might open up new avenues to map and monitor the planet's wetlands for methane emission assessments. Such applications are expected to be demonstrated by the availability of data from GEROS-ISS, an ESA experiment currently in phase A, and CyGNSS [3], a NASA mission currently in development. In particular, the paper details the expected error characteristics and the role of filtering played in the assimilation of these data to reduce the altimetric error (when averaging many measurements).

Su-Schrieffer-Heeger chain with one pair of [Formula: see text]-symmetric defects.

PubMed

Jin, L; Wang, P; Song, Z

2017-07-19

The topologically nontrivial edge states induce [Formula: see text] transition in Su-Schrieffer-Heeger (SSH) chain with one pair of gain and loss at boundaries. In this study, we investigated a pair of [Formula: see text]-symmetric defects located inside the SSH chain, in particular, the defects locations are at the chain centre. The [Formula: see text] symmetry breaking of the bound states leads to the [Formula: see text] transition, the [Formula: see text]-symmetric phases and the localized states were studied. In the broken [Formula: see text]-symmetric phase, all energy levels break simultaneously in topologically trivial phase; however, two edge states in topologically nontrivial phase are free from the influence of the [Formula: see text]-symmetric defects. We discovered [Formula: see text]-symmetric bound states induced by the [Formula: see text]-symmetric local defects at the SSH chain centre. The [Formula: see text]-symmetric bound states significantly increase the [Formula: see text] transition threshold and coalesce to the topologically protected zero mode with vanishing probabilities on every other site of the left-half chain and the right-half chain, respectively.

Pilot-scale bioconversion of rice and sunflower agro-residues into medicinal mushrooms and laccase enzymes through solid-state fermentation with Ganoderma lucidum.

PubMed

Postemsky, P D; Bidegain, M A; González-Matute, R; Figlas, N D; Cubitto, M A

2017-05-01

Solid-state fermentation was evaluated at the pilot-scale for the bioconversion and valorization of rice husks and straw (RSH), or sunflower seed hulls (SSH), into medicinal mushrooms and crude extracts, with laccase activity. The average mushroom yield was 56kg dry weight per ton of agro-residues. Laccase activity in crude aqueous extracts showed its maximum value of 10,927Ukg -1 in RSH (day 10, Exudate phase) and 16,442Ukg -1 in SSH (day 5, Full colonization phase), the activity at the Residual substrate phase being 511Ukg -1 in RSH and 803Ukg -1 in SSH, respectively. Crude extracts obtained with various protocols revealed differences in the extraction yields. Lyophilization followed by storage at 4°C allowed the preservation of laccase activity for more than one month. It is proposed that standard mushroom farms could increase their profits by obtaining laccase as a byproduct during the gaps in mycelium running. Copyright © 2017 Elsevier Ltd. All rights reserved.

Regional circulation around Heard and McDonald Islands and through the Fawn Trough, central Kerguelen Plateau

NASA Astrophysics Data System (ADS)

van Wijk, Esmee M.; Rintoul, Stephen R.; Ronai, Belinda M.; Williams, Guy D.

2010-05-01

The fine-scale circulation around the Heard and McDonald Islands and through the Fawn Trough, Kerguelen Plateau, is described using data from three high-resolution CTD sections, Argo floats and satellite maps of chlorophyll a, sea surface temperature (SST) and absolute sea surface height (SSH). We confirm that the Polar Front (PF) is split into two branches over the Kerguelen Plateau, with the NPF crossing the north-eastern limits of our survey carrying 25 Sv to the southeast. The SPF was associated with a strong eastward-flowing jet carrying 12 Sv of baroclinic transport through the deepest part of Fawn Trough (relative to the bottom). As the section was terminated midway through the trough this estimate is very likely to be a lower bound for the total transport. We demonstrate that the SPF contributes to the Fawn Trough Current identified by previous studies. After exiting the Fawn Trough, the SPF crossed Chun Spur and continued as a strong north-westward flowing jet along the eastern flank of the Kerguelen Plateau before turning offshore between 50°S and 51.5°S. Measured bottom water temperatures suggest a deep water connection between the northern and southern parts of the eastern Kerguelen Plateau indicating that the deep western boundary current continues at least as far north as 50.5°S. Analysis of satellite altimetry derived SSH streamlines demonstrates a southward shift of both the northern and southern branches of the Polar Front from 1994 to 2004. In the direct vicinity of the Heard and McDonald islands, cool waters of southern origin flow along the Heard Island slope and through the Eastern Trough bringing cold Winter Water (WW) onto the plateau. Complex topography funnels flow through canyons, deepens the mixed layer and increases productivity, resulting in this area being the preferred foraging region for a number of satellite-tracked land-based predators.

Examining spatiotemporal distribution and CPUE-environment relationships for the jumbo flying squid Dosidicus gigas offshore Peru based on spatial autoregressive model

NASA Astrophysics Data System (ADS)

Feng, Yongjiu; Chen, Xinjun; Liu, Yang

2017-09-01

The spatiotemporal distribution and relationship between nominal catch-per-unit-effort (CPUE) and environment for the jumbo flying squid (Dosidicus gigas) were examined in offshore Peruvian waters during 2009-2013. Three typical oceanographic factors affecting the squid habitat were investigated in this research, including sea surface temperature (SST), sea surface salinity (SSS) and sea surface height (SSH). We studied the CPUE-environment relationships for D. gigas using a spatially-lagged version of spatial autoregressive (SAR) model and a generalized additive model (GAM), with the latter for auxiliary and comparative purposes. The annual fishery centroids were distributed broadly in an area bounded by 79.5°-82.7°W and 11.9°-17.1°S, while the monthly fishery centroids were spatially close and lay in a smaller area bounded by 81.0°-81.2°W and 14.3°-15.4°S. Our results show that the preferred environmental ranges for D. gigas offshore Peru were 20.9°-21.9°C for SST, 35.16-35.32 for SSS and 27.2-31.5 cm for SSH in the areas bounded by 78°-80°W/82-84°W and 15°-18°S. Monthly spatial distributions during October to December were predicted using the calibrated GAM and SAR models and general similarities were found between the observed and predicted patterns for the nominal CPUE of D. gigas. The overall accuracies for the hotspots generated by the SAR model were much higher than those produced by the GAM model for all three months. Our results contribute to a better understanding of the spatiotemporal distributions of D. gigas offshore Peru, and offer a new SAR modeling method for advancing fishery science.

Observational evidence of seasonality in the timing of loop current eddy separation

NASA Astrophysics Data System (ADS)

Hall, Cody A.; Leben, Robert R.

2016-12-01

Observational datasets, reports and analyses over the time period from 1978 through 1992 are reviewed to derive pre-altimetry Loop Current (LC) eddy separation dates. The reanalysis identified 20 separation events in the 15-year record. Separation dates are estimated to be accurate to approximately ± 1.5 months and sufficient to detect statistically significant LC eddy separation seasonality, which was not the case for previously published records because of the misidentification of separation events and their timing. The reanalysis indicates that previously reported LC eddy separation dates, determined for the time period before the advent of continuous altimetric monitoring in the early 1990s, are inaccurate because of extensive reliance on satellite sea surface temperature (SST) imagery. Automated LC tracking techniques are used to derive LC eddy separation dates in three different altimetry-based sea surface height (SSH) datasets over the time period from 1993 through 2012. A total of 28-30 LC eddy separation events were identified in the 20-year record. Variations in the number and dates of eddy separation events are attributed to the different mean sea surfaces and objective-analysis smoothing procedures used to produce the SSH datasets. Significance tests on various altimetry and pre-altimetry/altimetry combined date lists consistently show that the seasonal distribution of separation events is not uniform at the 95% confidence level. Randomization tests further show that the seasonal peak in LC eddy separation events in August and September is highly unlikely to have occurred by chance. The other seasonal peak in February and March is less significant, but possibly indicates two seasons of enhanced probability of eddy separation centered near the spring and fall equinoxes. This is further quantified by objectively dividing the seasonal distribution into two seasons using circular statistical techniques and a k-means clustering algorithm. The estimated spring and fall centers are March 2nd and August 23rd, respectively, with season boundaries in May and December.

Exploring image data assimilation in the prospect of high-resolution satellite data

NASA Astrophysics Data System (ADS)

Verron, J. A.; Duran, M.; Gaultier, L.; Brankart, J. M.; Brasseur, P.

2016-02-01

Many recent works show the key importance of studying the ocean at fine scales including the meso- and submesoscales. Satellite observations such as ocean color data provide informations on a wide range of scales but do not directly provide information on ocean dynamics. Satellite altimetry provide informations on the ocean dynamic topography (SSH) but so far with a limited resolution in space and even more, in time. However, in the near future, high-resolution SSH data (e.g. SWOT) will give a vision of the dynamic topography at such fine space resolution. This raises some challenging issues for data assimilation in physical oceanography: develop reliable methodology to assimilate high resolution data, make integrated use of various data sets including biogeochemical data, and even more simply, solve the challenge of handling large amont of data and huge state vectors. In this work, we propose to consider structured information rather than pointwise data. First, we take an image data assimilation approach in studying the feasibility of inverting tracer observations from Sea Surface Temperature and/or Ocean Color datasets, to improve the description of mesoscale dynamics provided by altimetric observations. Finite Size Lyapunov Exponents are used as an image proxy. The inverse problem is formulated in a Bayesian framework and expressed in terms of a cost function measuring the misfits between the two images. Second, we explore the inversion of SWOT-like high resolution SSH data and more especially the various possible proxies of the actual SSH that could be used to control the ocean circulation at various scales. One focus is made on controlling the subsurface ocean from surface only data. A key point lies in the errors and uncertainties that are associated to SWOT data.

Impact of salt exposure on N-acetylgalactosamine-4-sulfatase (arylsulfatase B) activity, glycosaminoglycans, kininogen, and bradykinin

PubMed Central

Kotlo, Kumar; Bhattacharyya, Sumit; Yang, Bo; Feferman, Leonid; Tejaskumar, Shah; Linhardt, Robert; Danziger, Robert

2013-01-01

N -acetylgalactosamine-4-sulfatase (Arylsulfatase B; ARSB) is the enzyme that removes sulfate groups from the N-acetylgalactosamine-4-sulfate residue at the non-reducing end of chondroitin-4-sulfate (C4S) and dermatan sulfate (DS). Previous studies demonstrated reduction in cell-bound high molecular weight kininogen in normal rat kidney (NRK) epithelial cells when chondroitin-4-sulfate content was reduced following overexpression of ARSB activity, and chondroitinase ABC produced similar decline in cell-bound kininogen. Reduction in the cell-bound kininogen was associated with increase in secreted bradykinin. In this report, we extend the in vitro findings to in vivo models, and present findings in Dahl salt-sensitive (SS) rats exposed to high (SSH) and low salt (SSL) diets. In the renal tissue of the SSH rats, ARSB activity was significantly less than in the SSL rats, and chondroitin-4-sulfate and total sulfated glycosaminoglycan content were significantly greater. Disaccharide analysis confirmed marked increase in C4S disaccharides in the renal tissue of the SSH rats. In contrast, unsulfated, hyaluronan-derived disaccharides were increased in the rats on the low salt diet. In the SSH rats, with lower ARSB activity and higher C4S levels, cell-bound, high-molecular weight kininogen was greater and urinary bradykinin was lower. ARSB activity in renal tissue and NRK cells declined when exogenous chloride concentration was increased in vitro. The impact of high chloride exposure in vivo on ARSB, chondroitin-4-sulfation, and C4S-kininogen binding provides a mechanism that links dietary salt intake with bradykinin secretion and may be a factor in blood pressure regulation. PMID:23385884

Repeated psychological stress-induced alterations of visceral sensitivity and colonic motor functions in mice: Influence of surgery and postoperative single housing on visceromotor responses

PubMed Central

Larauche, Muriel; Gourcerol, Guillaume; Million, Mulugeta; Adelson, David W.; Taché, Yvette

2012-01-01

Visceral pain modulation by chronic stress in mice has been little studied. Electromyography (EMG) recording of abdominal muscle contractions, as a proxy to the visceromotor response (VMR), requires electrode implantation and post-surgical single housing (SH) which could affect the VMR to stress. To test this hypothesis, male mice had electrode implantation surgery (S) plus SH, or no surgery and were group housed (NS-GH) or single housed (NS-SH) and exposed to either water avoidance stress (WAS, 1 h/day) or left undisturbed in their home cages for 10 days. The VMR to phasic ascending colorectal distension (CRD) was assessed before (basal) and 24 h after 10 days of WAS or no stress using a surgery-free method of intraluminal colonic pressure (ICP) recording (solid-state manometry). WAS heightened significantly the VMR to CRD at 30, 45, and 60 mmHg in S-SH vs. NS-GH, but not compared to NS-SH conscious mice. Compared to basal CRD, WAS increased VMR at 60 mmHg in the S-SH group and decreased it at 30–60 mmHg in NS-GH mice, while having no effect in NS-SH mice. The average defecation during the hour of repeated WAS over 10 days was 1.9 and 2.4 fold greater in S-SH vs. NS-GH and NS-SH mice, respectively. These data indicate that the combination of S-SH required for VMR monitoring with EMG is an important component of repeated WAS-induced post-stress visceral hypersensitivity and defecation in mice. PMID:20536336

Impact of salt exposure on N-acetylgalactosamine-4-sulfatase (arylsulfatase B) activity, glycosaminoglycans, kininogen, and bradykinin.

PubMed

Kotlo, Kumar; Bhattacharyya, Sumit; Yang, Bo; Feferman, Leonid; Tejaskumar, Shah; Linhardt, Robert; Danziger, Robert; Tobacman, Joanne K

2013-10-01

N-acetylgalactosamine-4-sulfatase (Arylsulfatase B; ARSB) is the enzyme that removes sulfate groups from the N-acetylgalactosamine-4-sulfate residue at the non-reducing end of chondroitin-4-sulfate (C4S) and dermatan sulfate (DS). Previous studies demonstrated reduction in cell-bound high molecular weight kininogen in normal rat kidney (NRK) epithelial cells when chondroitin-4-sulfate content was reduced following overexpression of ARSB activity, and chondroitinase ABC produced similar decline in cell-bound kininogen. Reduction in the cell-bound kininogen was associated with increase in secreted bradykinin. In this report, we extend the in vitro findings to in vivo models, and present findings in Dahl salt-sensitive (SS) rats exposed to high (SSH) and low salt (SSL) diets. In the renal tissue of the SSH rats, ARSB activity was significantly less than in the SSL rats, and chondroitin-4-sulfate and total sulfated glycosaminoglycan content were significantly greater. Disaccharide analysis confirmed marked increase in C4S disaccharides in the renal tissue of the SSH rats. In contrast, unsulfated, hyaluronan-derived disaccharides were increased in the rats on the low salt diet. In the SSH rats, with lower ARSB activity and higher C4S levels, cell-bound, high-molecular weight kininogen was greater and urinary bradykinin was lower. ARSB activity in renal tissue and NRK cells declined when exogenous chloride concentration was increased in vitro. The impact of high chloride exposure in vivo on ARSB, chondroitin-4-sulfation, and C4S-kininogen binding provides a mechanism that links dietary salt intake with bradykinin secretion and may be a factor in blood pressure regulation.

Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico

PubMed Central

Maga, A. Murat; Navarro, Nicolas; Cunningham, Michael L.; Cox, Timothy C.

2015-01-01

We describe the first application of high-resolution 3D micro-computed tomography, together with 3D landmarks and geometric morphometrics, to map QTL responsible for variation in skull shape and size using a backcross between C57BL/6J and A/J inbred strains. Using 433 animals, 53 3D landmarks, and 882 SNPs from autosomes, we identified seven QTL responsible for the skull size (SCS.qtl) and 30 QTL responsible for the skull shape (SSH.qtl). Size, sex, and direction-of-cross were all significant factors and included in the analysis as covariates. All autosomes harbored at least one SSH.qtl, sometimes up to three. Effect sizes of SSH.qtl appeared to be small, rarely exceeding 1% of the overall shape variation. However, they account for significant amount of variation in some specific directions of the shape space. Many QTL have stronger effect on the neurocranium than expected from a random vector that will parcellate uniformly across the four cranial regions. On the contrary, most of QTL have an effect on the palate weaker than expected. Combined interval length of 30 SSH.qtl was about 315 MB and contained 2476 known protein coding genes. We used a bioinformatics approach to filter these candidate genes and identified 16 high-priority candidates that are likely to play a role in the craniofacial development and disorders. Thus, coupling the QTL mapping approach in model organisms with candidate gene enrichment approaches appears to be a feasible way to identify high-priority candidates genes related to the structure or tissue of interest. PMID:25859222

[Comparisons of different methods for virus-elimination of edible fungi].

PubMed

Zhang, Chao-hui; Liu, Ying-miao; Qi, Yuan-cheng; Gao, Yu-qian; Shen, Jin-wen; Qiu, Li-you

2010-05-01

Four dsRNA bands were extracted from Pleurotus ostreatus TD300 by the dsRNA isolation technique with sizes of 8.2 kb, 2.5 kb, 2.1 kb, and 1.1 kb, respectively. Four virus-eliminated methods, i. e. hyphal tips cut (HTC), protoplast regeneration (PR), single spore hybridization (SSH), and frozen and lyophilized (FL), were applied to prepare virus-eliminated strains, and one virus-eliminated strain was selected for each virus-elimination method. The virus-eliminated strains were named as HTC8, PR15, FL01, and SSH11, respectively. There were low concentration of 8.2 kb dsRNA remained in HTC8, as well as low concentration of 8.2 kb and 2.5 kb dsRNA remained in FL01. However, no dsRNA remained in PR15 and SSH11. The hyphal growth rate and laccase activity of the virus-eliminated strains increased, especially HTC8 and PR15, whose hyphal growth rate was higher by 22.73% and 18.18%, and laccase activities higher by 145.83% and 134.38% than that of the original strain, respectively. The conclusion is that hyphal tips cut and protoplast regeneration are suitable to prepare virus-eliminated strains of edible fungi.

Identification of sennoside A as a novel inhibitor of the slingshot (SSH) family proteins related to cancer metastasis.

PubMed

Lee, Seon Young; Kim, Wooil; Lee, Young Geun; Kang, Hyo Jin; Lee, Sang-Hyun; Park, Sun Young; Min, Jeong-Ki; Lee, Sang-Rae; Chung, Sang J

2017-05-01

Phospho-cofilin (p-cofilin), which has a phosphate group on Ser-3, is involved in actin polymerization. Its dephosphorylated form promotes filopodia formation and cell migration by enhancing actin depolymerization. Protein phosphatase slingshot homologs (SSHs), known as dual-specificity phosphatases, catalyze hydrolytic removal of the Ser-3 phosphate group from phospho-cofilin. Aberrant SSH activity results in cancer metastasis, implicating SSHs as potential therapeutic targets for cancer metastasis. In this study, we screened 658 natural products purified from traditional oriental medicinal plants to identify three potent SSH inhibitors with submicromolar or single-digit micromolar K i values: gossypol, hypericin, and sennoside A. The three compounds were purified from cottonseed, Saint John's wort, and rhubarb, respectively. Sennoside A markedly increased cofilin phosphorylation in pancreatic cancer cells, leading to impaired actin dynamics in pancreatic cancer cells with or without EGF stimulation and reduced motility and invasiveness in vitro and in vivo. Collaboratively, these results demonstrate that sennoside A is a novel inhibitor of SSHs and suggest that it may be valuable in the development of pharmaceutical drugs for treating cancer metastasis. Copyright © 2017 Elsevier Ltd. All rights reserved.

Efficient ensemble system based on the copper binding motif for highly sensitive and selective detection of cyanide ions in 100% aqueous solutions by fluorescent and colorimetric changes.

PubMed

Jung, Kwan Ho; Lee, Keun-Hyeung

2015-09-15

A peptide-based ensemble for the detection of cyanide ions in 100% aqueous solutions was designed on the basis of the copper binding motif. 7-Nitro-2,1,3-benzoxadiazole-labeled tripeptide (NBD-SSH, NBD-SerSerHis) formed the ensemble with Cu(2+), leading to a change in the color of the solution from yellow to orange and a complete decrease of fluorescence emission. The ensemble (NBD-SSH-Cu(2+)) sensitively and selectively detected a low concentration of cyanide ions in 100% aqueous solutions by a colorimetric change as well as a fluorescent change. The addition of cyanide ions instantly removed Cu(2+) from the ensemble (NBD-SSH-Cu(2+)) in 100% aqueous solutions, resulting in a color change of the solution from orange to yellow and a "turn-on" fluorescent response. The detection limits for cyanide ions were lower than the maximum allowable level of cyanide ions in drinking water set by the World Health Organization. The peptide-based ensemble system is expected to be a potential and practical way for the detection of submicromolar concentrations of cyanide ions in 100% aqueous solutions.

PyPele Rewritten To Use MPI

NASA Technical Reports Server (NTRS)

Hockney, George; Lee, Seungwon

2008-01-01

A computer program known as PyPele, originally written as a Pythonlanguage extension module of a C++ language program, has been rewritten in pure Python language. The original version of PyPele dispatches and coordinates parallel-processing tasks on cluster computers and provides a conceptual framework for spacecraft-mission- design and -analysis software tools to run in an embarrassingly parallel mode. The original version of PyPele uses SSH (Secure Shell a set of standards and an associated network protocol for establishing a secure channel between a local and a remote computer) to coordinate parallel processing. Instead of SSH, the present Python version of PyPele uses Message Passing Interface (MPI) [an unofficial de-facto standard language-independent application programming interface for message- passing on a parallel computer] while keeping the same user interface. The use of MPI instead of SSH and the preservation of the original PyPele user interface make it possible for parallel application programs written previously for the original version of PyPele to run on MPI-based cluster computers. As a result, engineers using the previously written application programs can take advantage of embarrassing parallelism without need to rewrite those programs.

Isolation, identification and expression analysis of salt-induced genes in Suaeda maritima, a natural halophyte, using PCR-based suppression subtractive hybridization

PubMed Central

Sahu, Binod B; Shaw, Birendra P

2009-01-01

Background Despite wealth of information generated on salt tolerance mechanism, its basics still remain elusive. Thus, there is a need of continued effort to understand the salt tolerance mechanism using suitable biotechnological techniques and test plants (species) to enable development of salt tolerant cultivars of interest. Therefore, the present study was undertaken to generate information on salt stress responsive genes in a natural halophyte, Suaeda maritima, using PCR-based suppression subtractive hybridization (PCR-SSH) technique. Results Forward and reverse SSH cDNA libraries were constructed after exposing the young plants to 425 mM NaCl for 24 h. From the forward SSH cDNA library, 429 high quality ESTs were obtained. BLASTX search and TIGR assembler programme revealed overexpression of 167 unigenes comprising 89 singletons and 78 contigs with ESTs redundancy of 81.8%. Among the unigenes, 32.5% were found to be of special interest, indicating novel function of these genes with regard to salt tolerance. Literature search for the known unigenes revealed that only 17 of them were salt-inducible. A comparative analysis of the existing SSH cDNA libraries for NaCl stress in plants showed that only a few overexpressing unigenes were common in them. Moreover, the present study also showed increased expression of phosphoethanolamine N-methyltransferase gene, indicating the possible accumulation of a much studied osmoticum, glycinebetaine, in halophyte under salt stress. Functional categorization of the proteins as per the Munich database in general revealed that salt tolerance could be largely determined by the proteins involved in transcription, signal transduction, protein activity regulation and cell differentiation and organogenesis. Conclusion The study provided a clear indication of possible vital role of glycinebetaine in the salt tolerance process in S. maritima. However, the salt-induced expression of a large number of genes involved in a wide range of cellular functions was indicative of highly complex nature of the process as such. Most of the salt inducible genes, nonetheless, appeared to be species-specific. In light of the observations made, it is reasonable to emphasize that a comparative analysis of ESTs from SSH cDNA libraries generated systematically for a few halophytes with varying salt exposure time may clearly identify the key salt tolerance determinant genes to a minimum number, highly desirable for any genetic manipulation adventure. PMID:19497134

Assessment of Global Forecast Ocean Assimilation Model (FOAM) using new satellite SST data

NASA Astrophysics Data System (ADS)

Ascione Kenov, Isabella; Sykes, Peter; Fiedler, Emma; McConnell, Niall; Ryan, Andrew; Maksymczuk, Jan

2016-04-01

There is an increased demand for accurate ocean weather information for applications in the field of marine safety and navigation, water quality, offshore commercial operations, monitoring of oil spills and pollutants, among others. The Met Office, UK, provides ocean forecasts to customers from governmental, commercial and ecological sectors using the Global Forecast Ocean Assimilation Model (FOAM), an operational modelling system which covers the global ocean and runs daily, using the NEMO (Nucleus for European Modelling of the Ocean) ocean model with horizontal resolution of 1/4° and 75 vertical levels. The system assimilates salinity and temperature profiles, sea surface temperature (SST), sea surface height (SSH), and sea ice concentration observations on a daily basis. In this study, the FOAM system is updated to assimilate Advanced Microwave Scanning Radiometer 2 (AMSR2) and the Spinning Enhanced Visible and Infrared Imager (SEVIRI) SST data. Model results from one month trials are assessed against observations using verification tools which provide a quantitative description of model performance and error, based on statistical metrics, including mean error, root mean square error (RMSE), correlation coefficient, and Taylor diagrams. A series of hindcast experiments is used to run the FOAM system with AMSR2 and SEVIRI SST data, using a control run for comparison. Results show that all trials perform well on the global ocean and that largest SST mean errors were found in the Southern hemisphere. The geographic distribution of the model error for SST and temperature profiles are discussed using statistical metrics evaluated over sub-regions of the global ocean.

Long-Term Monitoring of Regional Sea Surface Height Variability Using High-Resolution Satellite Altimetry

NASA Astrophysics Data System (ADS)

Rice, A. E.; Crout, R. L.

2017-12-01

Shallow water altimetry is an emerging field that in recent years has rapidly gained attention for both the numerous applications it can offer to the oceanographic community (e.g. assessment of climate change impacts to the coastal zone; quantification of sea state etc.) and, depending on the altimeter used, for the wealth of available historical data that can be employed for climatological studies. In this study we focus on the long-term analysis of regional sea surface height anomaly (SSHA) variability over the mid and outer shelf (≥ 16 km from the coast) for 18 selected coastal altimeter tracks located on the east coast of the US and Asia for a period of eight years (294 passes from July 2008 to July 2016) using Jason-2 20 Hz altimeter data from the L2 AVISO-PISTACH experimental products. After implementing geophysical corrections to the raw altimeter range, signal noise in the individual SSH passes was reduced by applying a median filter followed by a 60-point (18 km) low-pass filter as in Birol and Delebeque (2014). Since individual altimeter passes did not cease to collect data at the same distance from the coastline, a nearest-point-to-land (NPTL) was determined for each track for statistical analysis of the data. NPTL time series and SSHA envelopes, computed by subtracting mean SSHAs from individual passes, were used for the analysis. A comparison of wind and water level gauge data to a US east coast track reveals correlation between SSHA and winds and a relationship to subtidal water level frequencies. Time series of NPTL for all tracks show intra-annual and inter and intra-seasonal variability, with higher and lower water levels linked to seasons. Lastly, envelope plots display higher SSHA variability over the mid shelf than the outer shelf, revealing the location and magnitude (up to 0.5 m water level differences) of setup and set down occurrences. Various products derived from the analysis that are useful for oceanographic operations, including water level change percentages and width of coastal boundary layers, are discussed.

KSC-04PD-2216

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. This panel comprising former and current Safety and Mission Assurance (S&MA) management talk about identifying and comparing safety challenges of the past, present and future during Spaceport Super Safety and Health Day (SS&H) at KSC. Larry Crawford, left, is director of S&MA. SS&H Day included guest speakers Dr. Pamela Peeke, Navy Com. Stephen E. Iwanowicz, NASAs Dr. Kristine Calderon and Olympic-great Bruce Jenner. In addition, many vendors exhibits were on display for employees. Super Safety and Health Day was initiated at KSC in 1998 to increase awareness of the importance of safety and health among the government and contractor workforce. The theme for this years event was Safety and Health: A Winning Combination.

Pyrolysis of sunflower seed hulls for obtaining bio-oils.

PubMed

Casoni, Andrés I; Bidegain, Maximiliano; Cubitto, María A; Curvetto, Nestor; Volpe, María A

2015-02-01

Bio-oils from pyrolysis of as received sunflower seed hulls (SSH), hulls previously washed with acid (SSHA) and hulls submitted to a mushroom enzymatic attack (BSSH) were analyzed. The concentration of lignin, hemicellulose and cellulose varied with the pre-treatment. The liquid corresponding to SSH presented a relatively high concentration of acetic acid and a high instability to storage. The bio-oil from SSHA showed a high concentration of furfural and an appreciable amount of levoglucosenone. Lignin was degraded upon enzymatic activity, for this reason BSSH led to the highest yield of bio-oil, with relative high concentration of acetic acid and stability to storage. Copyright © 2014 Elsevier Ltd. All rights reserved.

A comparison of sea surface salinity in the equatorial Pacific Ocean during the 1997-1998, 2012-2013, and 2014-2015 ENSO events

NASA Astrophysics Data System (ADS)

Corbett, Caroline M.; Subrahmanyam, Bulusu; Giese, Benjamin S.

2017-11-01

Sea surface salinity (SSS) variability during the 1997-1998 El Niño event and the failed 2012-2013 and 2014-2015 El Niño events is explored using a combination of observations and ocean reanalyses. Previously, studies have mainly focused on the sea surface temperature (SST) and sea surface height (SSH) variability. This analysis utilizes salinity data from Argo and the Simple Ocean Data Assimilation (SODA) reanalysis to examine the SSS variability. Advective processes and evaporation minus precipitation (E-P) variability is understood to influence SSS variability. Using surface wind, surface current, evaporation, and precipitation data, we analyze the causes for the observed SSS variability during each event. Barrier layer thickness and upper level salt content are also examined in connection to subsurface salinity variability. Both advective processes and E-P variability are important during the generation and onset of a successful El Niño, while a lack of one or both of these processes leads to a failed ENSO event.

Remote observing with NASA's Deep Space Network

NASA Astrophysics Data System (ADS)

Kuiper, T. B. H.; Majid, W. A.; Martinez, S.; Garcia-Miro, C.; Rizzo, J. R.

2012-09-01

The Deep Space Network (DSN) communicates with spacecraft as far away as the boundary between the Solar System and the interstellar medium. To make this possible, large sensitive antennas at Canberra, Australia, Goldstone, California, and Madrid, Spain, provide for constant communication with interplanetary missions. We describe the procedures for radioastronomical observations using this network. Remote access to science monitor and control computers by authorized observers is provided by two-factor authentication through a gateway at the Jet Propulsion Laboratory (JPL) in Pasadena. To make such observations practical, we have devised schemes based on SSH tunnels and distributed computing. At the very minimum, one can use SSH tunnels and VNC (Virtual Network Computing, a remote desktop software suite) to control the science hosts within the DSN Flight Operations network. In this way we have controlled up to three telescopes simultaneously. However, X-window updates can be slow and there are issues involving incompatible screen sizes and multi-screen displays. Consequently, we are now developing SSH tunnel-based schemes in which instrument control and monitoring, and intense data processing, are done on-site by the remote DSN hosts while data manipulation and graphical display are done at the observer's host. We describe our approaches to various challenges, our experience with what worked well and lessons learned, and directions for future development.

The mining of pearl formation genes in pearl oyster Pinctada fucata by cDNA suppression subtractive hybridization.

PubMed

Wang, Ning; Kinoshita, Shigeharu; Nomura, Naoko; Riho, Chihiro; Maeyama, Kaoru; Nagai, Kiyohito; Watabe, Shugo

2012-04-01

Recent researches revealed the regional preference of biomineralization gene transcription in the pearl oyster Pinctada fucata: it transcribed mainly the genes responsible for nacre secretion in mantle pallial, whereas the ones regulating calcite shells expressed in mantle edge. This study took use of this character and constructed the forward and reverse suppression subtractive hybridization (SSH) cDNA libraries. A total of 669 cDNA clones were sequenced and 360 expressed sequence tags (ESTs) greater than 100 bp were generated. Functional annotation associated 95 ESTs with specific functions, and 79 among them were identified from P. fucata at the first time. In the forward SSH cDNA library, it recognized mass amount of nacre protein genes, biomineralization genes dominantly expressed in the mantle pallial, calcium-ion-binding genes, and other biomineralization-related genes important for pearl formation. Real-time PCR showed that all the examined genes were distributed in oyster mantle tissues with a consistence to the SSH design. The detection of their RNA transcripts in pearl sac confirmed that the identified genes were certainly involved in pearl formation. Therefore, the data from this work will initiate a new round of pearl formation gene study and shed new insights into molluscan biomineralization.

Biological Hydropersulfides and Related Polysulfides: A New Concept and Perspective in Redox Biology.

PubMed

Fukuto, Jon M; Ignarro, Louis J; Nagy, Peter; Wink, David A; Kevil, Christopher G; Feelisch, Martin; Cortese-Krott, Miriam M; Bianco, Christopher L; Kumagai, Yoshito; Hobbs, Adrian J; Lin, Joseph; Ida, Tomoaki; Akaike, Takaaki

2018-05-12

The chemical biology of thiols (RSH, e.g., cysteine and cysteine containing proteins/peptides) has been a topic of extreme interest for many decades due to their reported roles in protein structure/folding, redox signaling, metal ligation, cellular protection and enzymology. While many of the studies on thiol/sulfur biochemistry have focused on thiols, relatively ignored have been hydropersulfides (RSSH) and higher order polysulfur species (RSS n H, RSS n R, n > 1). Recent and provocative work has alluded to the prevalence and likely physiological importance of RSSH and related RSS n H. RSSH of cysteine (Cys-SSH) has been found to be prevalent in mammalian systems along with Cys-SSH-containing proteins. The RSSH functionality has not been examined to the extent of other biologically relevant sulfur derivatives (e.g., sulfenic acids, disulfides, etc.), whose roles in cell signaling are strongly indicated. The recent finding of Cys-SSH biosynthesis and translational incorporation into proteins is an unequivocal indication of its fundamental importance and necessitates a more profound look into the physiology of RSSH. In this Review, we discuss the currently reported chemical biology of RSSH (and related species) as a prelude to discussing their possible physiological roles. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Gene-expression profiling using suppression-subtractive hybridization and cDNA microarray in rat mononuclear cells in response to welding-fume exposure.

PubMed

Rim, Kyung Taek; Park, Kun Koo; Sung, Jae Hyuck; Chung, Yong Hyun; Han, Jeong Hee; Cho, Key Seung; Kim, Kwang Jong; Yu, Il Je

2004-06-01

Welders with radiographic pneumoconiosis abnormalities have shown a gradual clearing of the X-ray identified effects following removal from exposure. In some cases, the pulmonary fibrosis associated with welding fumes appears in a more severe form in welders. Accordingly, for the early detection of welding-fume-exposure-induced pulmonary fibrosis, the gene expression profiles of peripheral mononuclear cells from rats exposed to welding fumes were studied using suppression-subtractive hybridization (SSH) and a cDNA microarray. As such, Sprague-Dawley rats were exposed to a stainless steel arc welding fume for 2 h/day in an inhalation chamber with a 1107.5 +/- 2.6 mg/m3 concentration of total suspended particulate (TSP) for 30 days. Thereafter, the total RNA was extracted from the peripheral blood mononuclear cells, the cDNA synthesized from the total RNA using the SMART PCR cDNA method, and SSH performed to select the welding-fume-exposure-regulated genes. The cDNAs identified by the SSH were then cloned into a plasmid miniprep, sequenced and the sequences analysed using the NCBI BLAST programme. In the SSH cloned cDNA microarray analysis, five genes were found to increase their expression by 1.9-fold or more, including Rgs 14, which plays an important function in cellular signal transduction pathways; meanwhile 36 genes remained the same and 30 genes decreased their expression by more than 59%, including genes associated with the immune response, transcription factors and tyrosine kinases. Among the 5200 genes analysed, 256 genes (5.1%) were found to increase their gene expression, while 742 genes (15%) decreased their gene expression in response to the welding-fume exposure when tested using a commercial 5.0k DNA microarray. Therefore, unlike exposure to other toxic substances, prolonged welding-fume exposure was found to substantially downregulate many genes.

The Neurobiological Mechanism of Chemical Aversion (Emetic) Therapy for Alcohol Use Disorder: An fMRI Study

PubMed Central

Elkins, Ralph L.; Richards, Todd L.; Nielsen, Robert; Repass, Richard; Stahlbrandt, Henriettae; Hoffman, Hunter G.

2017-01-01

A recent NIH epidemiology study found the lifetime prevalence of alcohol use disorder in the United States to be 29%. Alcohol drinking behavior is strongly “learned” via pleasure center activation/reinforcement. Alcohol craving is a powerful desire to drink alcoholic beverages. Craving was added as one of the defining criteria for alcohol use disorder in DSM5, and craving reduction is becoming an increasingly important treatment goal. In the current study, patients with alcohol use disorder received 10 days of inpatient multi-modal treatments at Schick Shadel Hospital (SSH) of Seattle. The treatments included five chemical aversion conditioning sessions that associated alcohol cues (and alcohol) with nausea and emesis. All patients met DSM4 criteria for alcohol use disorder, were heavy drinkers, and reported craving alcohol pre-treatment. Craving reduction was one of the primary treatment goals. This is the first fMRI study to measure the effects of chemical aversion therapy on alcohol craving-related brain activity. Patients were recruited as subjects for the University of Washington (UW) brain scan study following SSH admission but before treatment onset. Prior to treatment, patients reported craving/desire for alcohol. After treatment (after four SSH chemical aversion treatments, again after five SSH chemical treatments, 30 and 90-days post-discharge), these same patients reported avoidance/aversion to alcohol. Most of the participants (69%) reported being still sober 12 months post-treatment. Consistent with a craving reduction mechanism of how chemical aversion therapy facilitates sobriety, results of the UW fMRI brain scans showed significant pre- to post-treatment reductions in craving-related brain activity in the occipital cortex. Additional fMRI brain scan studies are needed to further explore the neurobiological mechanism of chemical aversion therapy treatment for alcohol use disorder, and other substance use disorders for which chemical aversion therapy is used (e.g., opioid dependence and cocaine dependence). Substance use disorders are estimated to affect well over one billion people worldwide. PMID:29033802

Simulated TBO in CMIP5 models

NASA Astrophysics Data System (ADS)

Wang, J.

2012-12-01

More than 55 models from nearly 30 groups have participated in CMIP5 and have submitted their model outputs to the designated official websites. Almost all the models are state-of-the-art GCMs and ESMs, representing the most recent progresses in the field of numerical climate modelling all around the world. This huge bank of data makes it possible to evaluate all the newly developed models at the same time, as well as to study some specific scientific hot issues. TBO is a phenomenon that was found in many variables in the tropical and subtropical atmosphere and ocean with a physical mechanism still far from being well-known. It proves to be a useful index to evaluate a model's ability to reproduce such kind of annual climate variability in the tropics and subtropics. In this study, CMIP5 database has been and will be used to evaluate models' capability of producing a TBO signal. Parameters such as Nino indices, SSH, cloud, precipitation and radiation data, are used. Experiments with different initial conditions, RCPs, with or without a resolved stratosphere, are to be concerned. Altimeter SSH, satellite SST, OLR, and merged precipitation are used here as observations. Preliminary results show that: 1) TBO should be a natural variability in the coupled atmosphere-ocean system. 2) Many models can give a reasonable depict of TBO, not only the power spectrum peak but also the spacial distribution. 3) Different ICs do result in different spectral structures, less systematical than those among different models.

Four-dimensional variational Ocean ReAnalysis for the Western North Pacific over 30 years (FORA-WNP30)

NASA Astrophysics Data System (ADS)

Hirose, N.; Takatsuki, Y.; Usui, N.; Wakamatsu, T.; Tanaka, Y.; Toyoda, T.; Nishikawa, S.; Fujii, Y.; Igarashi, H.; Nishikawa, H.; Ishikawa, Y.; Kuragano, T.; Kamachi, M.

2016-12-01

An ocean reanalysis, FORA-WNP30, was produced by the collaborative work of Meteorological Research Institute, Japan Meteorological Agency (JMA/MRI) and Japan Agency for Marine-Earth Science and Technology (JAMSTEC). A state-of-the-art 4-dimensional variational ocean data assimilation system, MOVE-4DVAR (Usui et al., 2015) was used. The calculation for the reanalysis, with the horizontal resolution of 0.1 degree (about 10 km) and the period between 1 January 1982 and 31 December 2014, was carried out on the Earth Simulator with the support of JAMSTEC. The model forcing is derived from the JRA-55 atmospheric reanalysis product. In-situ temperature and salinity profiles above 1500m-depth, satellite-based sea surface temperature (SST) and sea surface height (SSH) data are assimilated in FORA-WNP30.Using the current observations obtained by the Acoustic Doppler Current Profiler (ADCP) installed in two JMA research vessels, we validate the current (velocity) field in FORA-WNP30 and MOVE-3DVAR system, the latter of which is an operational ocean data assimilation system in JMA. The ADCP current data are independent because they are not assimilated in both systems. The current fields at 100-m depth during 2001-2012, in both of FORA-WNP30 and MOVE-3DVAR show high correlation with ADCP observation in the south of Japan, the East China Sea and the Kuroshio extension region, and relatively low correlation in the Japan Sea and the Oyashio region. The correlation coefficients of current speed for FORA-WNP30 are higher than those for MOVE-3DVAR in all regions.FORA-WNP30 successfully reproduces not only the major ocean current such as the Kuroshio and Oyashio, but also the associated meso-scale phenomena such as eddies, fronts, and meanders. In addition, it replicates the Kuroshio large meander events and the strong intrusion event of the Oyashio in 1980s, in spite of no satellite altimeter data for this period. Therefore, FORA-WNP30 is a valuable dataset for use in a variety of oceanographic process study and related fields such as climate study, meteorology, and fisheries.

Storm Surge of Supertyphoon Haiyan (7-9 Nov 2013) on Samar (Philippines) Moved the Largest Boulder Ever Documented for a Recent Storm

NASA Astrophysics Data System (ADS)

Engel, M.; May, S. M.; Brill, D.; Reyes, M.; Brückner, H.

2014-12-01

Supertyphoon Haiyan (local name: Yolanda) struck the Philippines on 7-9 Nov 2013. It constantly reached category 5 (SSH scale) during its crossing of the archipelago. Storm surge heights of more than 7 m, wave heights of up to 5 m, and extensive flooding along the coast are reported. The death toll surpassed 6,000 individuals, and more than 16 M people were affected in total. The massive storm surge, which surprised many residents in particular on Samar and Leyte, also initiated the dislocation of large boulders at the coastline of SE Samar. Since such deposits may indicate maximum flooding distances and flow velocities of extreme wave events over timescales exceeding the era of historical documentation, they have increasingly been explored as a source for coastal hazard assessment. However, there is no clear consensus on differences in transport capacities and boulder field patterns created by storms and tsunamis. Thus, records from recent events provide a pivotal reference for process-related interpretation of other coastal boulder fields. We conducted a geomorphological and sedimentological survey after Haiyan on Leyte, Samar, Negros, and Bantayan. In SE Samar, the largest boulder (~75 m³; 9.0 x 4.5 x 3.5 m³; ~180 t) was shifted for 45 m on an inclined upper intertidal platform behind a Holocene reef by longshore sliding. A clast of ~70 t was moved by saltation and/or rolling for the same distance. A boulder of ~23.5 t was quarried at 2 m a.s.l. (above mean sea level) from the cliff edge of the Pleistocene carbonate platform and transported to a position of 6 m a.s.l. Boulders of up to ~17 t were moved from 6.5 to 10 m a.s.l., 2 m below the highest flood marks. Volumes of the limestone boulders were calculated using DGPS-derived point clouds transferred to ArcGIS. Densities were estimated to be around 2.3 g cm-3 using rock samples and the Archimedean principle. Downward-facing rock pools, grass patches, living barnacles, roots and soil staining on exposed former bottom sides, and fresh wood jammed under the rocks provide unambiguous evidence for subrecent transport and overturning. We conclude that the geological legacy of Haiyan calls for a careful reconsideration of possible storm surge transport where boulders, based on their size, have previously been associated with tsunami impacts and storms have been ruled out to be the cause.

Improving the Accuracy of Coastal Sea Surface Heights by Retracking Decontaminated Radar Altimetry Waveforms

NASA Astrophysics Data System (ADS)

Huang, Zhengkai; Wang, Haihong; Luo, Zhicai

2017-04-01

Due to the complex coastal topography and energetic ocean dynamics effect, the return echoes are contaminated while the satellite footprint approaches or leaves the coastline. Specular peaks are often induced in the trailing edges of contaminated waveforms, thus leading the error in the determination of the leading edge and associated track offset in the waveform retracking process. We propose an improved algorithm base on Tseng's modification method to decontaminated coastal (0-7 km from coastline) waveforms, thus improving both the utilization and precision of coastal sea surface height (SSH). Using the Envisat/Jason-2 SGDR data, the shortcoming of Tseng's method is pointed out and the novel algorithm is proposed by revising the strategy of selecting reference waveform and determining weight for removing outlier. The reference waveform of the decontaminated technology is closer to the real waveform of the offshore area, which avoids the over-modification problem of Tseng method. The sea-level measurements from tide gauge station and geoid height from EGM2008 model were used to validate the retracking strategy. Experimental results show that decontaminated waveform was more suitable than original and Tseng modified waveform and has uniform performance in both compare to the tide gauge and geoid. The retrieved altimetry data in the 0-1km and 1-7km coastal zone indicate that threshold retracker with decontaminated waveform have STD of 73.8cm and 33cm as compared with in situ gauge data,which correspond to 62.1% and 58% in precession compared to the unretracked altimetry measurements. The retracked SSHs are better in two coastal (0-1 km and 1-7km) zones, which have STD of 11.9cm and 22.7cm as compared with geoid height. Furthermore, the comparisons shows that the precision of decontaminated technology improve 0.3cm and 3.3cm than the best result of PISTACH product in coastal sea. This work is supported by the National Natural Science Foundation of China (Grant Nos. 41174020, 41174021, 41131067) and the open fund of Guangxi Key Laboratory of Spatial Information and Geometrics (Grant No. 15-140-07-26). Index Terms: retracking, Envisat, Jason-2, Coastal sea, decontamination.

The Gulf Stream frontal system: A key oceanographic feature in the habitat selection of the leatherback turtle?

NASA Astrophysics Data System (ADS)

Chambault, Philippine; Roquet, Fabien; Benhamou, Simon; Baudena, Alberto; Pauthenet, Etienne; de Thoisy, Benoît; Bonola, Marc; Dos Reis, Virginie; Crasson, Rodrigue; Brucker, Mathieu; Le Maho, Yvon; Chevallier, Damien

2017-05-01

Although some associations between the leatherback turtle Dermochelys coriacea and the Gulf Stream current have been previously suggested, no study has to date demonstrated strong affinities between leatherback movements and this particular frontal system using thorough oceanographic data in both the horizontal and vertical dimensions. The importance of the Gulf Stream frontal system in the selection of high residence time (HRT) areas by the North Atlantic leatherback turtle is assessed here for the first time using state-of-the-art ocean reanalysis products. Ten adult females from the Eastern French Guianese rookery were satellite tracked during post-nesting migration to relate (1) their horizontal movements to physical gradients (Sea Surface Temperature (SST), Sea Surface Height (SSH) and filaments) and biological variables (micronekton and chlorophyll a), and (2) their diving behaviour to vertical structures within the water column (mixed layer, thermocline, halocline and nutricline). All the turtles migrated northward towards the Gulf Stream north wall. Although their HRT areas were geographically remote (spread between 80-30 °W and 28-45 °N), all the turtles targeted similar habitats in terms of physical structures, i.e. strong gradients of SST, SSH and a deep mixed layer. This close association with the Gulf Stream frontal system highlights the first substantial synchronization ever observed in this species, as the HRTs were observed in close match with the autumn phytoplankton bloom. Turtles remained within the enriched mixed layer at depths of 38.5±7.9 m when diving in HRT areas, likely to have an easier access to their prey and maximize therefore the energy gain. These depths were shallow in comparison to those attained within the thermocline (82.4±5.6 m) while crossing the nutrient-poor subtropical gyre, probably to reach cooler temperatures and save energy during the transit. In a context of climate change, anticipating the evolution of such frontal structure under the influence of global warming is crucial to ensure the conservation of this vulnerable species.

Environmental studies of the Arabian Sea using remote sensing and GIS

NASA Astrophysics Data System (ADS)

Saxena, Ashlesha; Menezes, Andrew

2006-12-01

The Arabian Sea, situated in the western part of the northern Indian Ocean is a tropical basin. It is bounded on the east by the Indian peninsula, on the north by Baluchistan and Sindh provinces of Pakistan and on the west by the landmass of Arabia and Africa. The environmental factors that influence this tropical basin are the seasonally changing winds from the northeast during winter (November-February) and southwest during summer (June to September). Accordingly, the waters of the basin will experience seasonal variations. The study aims at understanding the seasonal and inter-annual variation of the Arabian Sea using satellite-derived data. The spatial domain selected for the present study is 40 degrees E and 78 degrees E longitude and equator to 30 degrees N. The remote sensing data with respect to sea surface temperature (SST), sea surface wind, sea surface height (SSH), and chlorophyll pigment concentration during January 2002 to December 2005 were used to understand the spatio-temporal variability of the Arabian Sea. The monthly mean SST data was obtained from Modis aqua, winds from Quikscat and chlorophyll pigment concentration from SeaWiFS. The SSH anomaly data was obtained from the merged product - Topex/Poseidon ERS 1/2 satellite which is 7-day snapshot. The spatial resolution of these data is 0.3 degrees latitude x 0.3 degrees longitude. Geographical information system (GIS) was used for processing and analysing the above parameters to determine the variability and detection of oceanic processes that are responsible for such variability.The study showed a very strong inverse correlation between SST and chlorophyll concentrations. Arabian Sea undergoes cooling during summer due to upwelling and advection, and in winter due to surface cooling under reduced solar heating. Upwelling along the coasts of Somalia, Arabia, and the west coast of India brings cold and nutrient rich sub-surface waters to the surface, which supports the observed high chlorophyll concentrations. During winter the convective mixing in the northern Arabian Sea supports high chlorophyll pigment concentrations. Due to strong solar heating, SST was warmest in spring (April), which supported least chlorophyll concentration.llite

Coil-to-coil physiological noise correlations and their impact on fMRI time-series SNR

PubMed Central

Triantafyllou, C.; Polimeni, J. R.; Keil, B.; Wald, L. L.

2017-01-01

Purpose Physiological nuisance fluctuations (“physiological noise”) are a major contribution to the time-series Signal to Noise Ratio (tSNR) of functional imaging. While thermal noise correlations between array coil elements have a well-characterized effect on the image Signal to Noise Ratio (SNR0), the element-to-element covariance matrix of the time-series fluctuations has not yet been analyzed. We examine this effect with a goal of ultimately improving the combination of multichannel array data. Theory and Methods We extend the theoretical relationship between tSNR and SNR0 to include a time-series noise covariance matrix Ψt, distinct from the thermal noise covariance matrix Ψ0, and compare its structure to Ψ0 and the signal coupling matrix SSH formed from the signal intensity vectors S. Results Inclusion of the measured time-series noise covariance matrix into the model relating tSNR and SNR0 improves the fit of experimental multichannel data and is shown to be distinct from Ψ0 or SSH. Conclusion Time-series noise covariances in array coils are found to differ from Ψ0 and more surprisingly, from the signal coupling matrix SSH. Correct characterization of the time-series noise has implications for the analysis of time-series data and for improving the coil element combination process. PMID:26756964

Method and system for progressive mesh storage and reconstruction using wavelet-encoded height fields

NASA Technical Reports Server (NTRS)

Baxes, Gregory A. (Inventor); Linger, Timothy C. (Inventor)

2011-01-01

Systems and methods are provided for progressive mesh storage and reconstruction using wavelet-encoded height fields. A method for progressive mesh storage includes reading raster height field data, and processing the raster height field data with a discrete wavelet transform to generate wavelet-encoded height fields. In another embodiment, a method for progressive mesh storage includes reading texture map data, and processing the texture map data with a discrete wavelet transform to generate wavelet-encoded texture map fields. A method for reconstructing a progressive mesh from wavelet-encoded height field data includes determining terrain blocks, and a level of detail required for each terrain block, based upon a viewpoint. Triangle strip constructs are generated from vertices of the terrain blocks, and an image is rendered utilizing the triangle strip constructs. Software products that implement these methods are provided.

Method and system for progressive mesh storage and reconstruction using wavelet-encoded height fields

NASA Technical Reports Server (NTRS)

Baxes, Gregory A. (Inventor)

2010-01-01

Systems and methods are provided for progressive mesh storage and reconstruction using wavelet-encoded height fields. A method for progressive mesh storage includes reading raster height field data, and processing the raster height field data with a discrete wavelet transform to generate wavelet-encoded height fields. In another embodiment, a method for progressive mesh storage includes reading texture map data, and processing the texture map data with a discrete wavelet transform to generate wavelet-encoded texture map fields. A method for reconstructing a progressive mesh from wavelet-encoded height field data includes determining terrain blocks, and a level of detail required for each terrain block, based upon a viewpoint. Triangle strip constructs are generated from vertices of the terrain blocks, and an image is rendered utilizing the triangle strip constructs. Software products that implement these methods are provided.

Numerical modeling of storm surges in the coast of Mozambique: the cases of tropical cyclones Bonita (1996) and Lisette (1997)

NASA Astrophysics Data System (ADS)

Bié, Alberto José; de Camargo, Ricardo; Mavume, Alberto Francisco; Harari, Joseph

2017-11-01

The coast of Mozambique is often affected by storms, particularly tropical cyclones during summer or sometimes midlatitude systems in the southern part. Storm surges combined with high freshwater discharge can drive huge coastal floods, affecting both urban and rural areas. To improve the knowledge about the impact of storm surges in the coast of Mozambique, this study presents the first attempt to model this phenomenon through the implementation of the Princeton Ocean Model (POM) in the Southwestern Indian Ocean domain (SWIO; 2-32°S, 28-85°E) using a regular grid with 1/6° of spatial resolution and 36 sigma levels. The simulation was performed for the period 1979-2010, and the most interesting events of surges were related to tropical cyclones Bonita (1996) and Lisette (1997) that occurred in the Mozambique Channel. The results showed that the model represented well the amplitude and phase of principal lunar and solar tidal constituents, as well as it captured the spatial pattern and magnitudes of SST with slight positive bias in summer and negative bias in winter months. In terms of SSH, the model underestimated the presence of mesoscale eddies, mainly in the Mozambique Channel. Our results also showed that the atmospheric sea level pressure had a significant contribution to storm heights during the landfall of the tropical cyclones Bonita (1996) and Lisette (1997) in the coast of Mozambique contributing with about 20 and 16% of the total surge height for each case, respectively, surpassing the contribution of the tide-surge nonlinear interactions by a factor of 2.

Variations in freshwater pathways from the Arctic Ocean into the North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Wang, Zeliang; Hamilton, James; Su, Jie

2017-06-01

Understanding the mechanisms that drive exchanges between the Arctic Ocean and adjacent oceans is critical to building our knowledge of how the Arctic is reacting to a warming climate, and how potential changes in Arctic Ocean freshwater export may impact the AMOC (Atlantic Meridional Overturning Circulation). Here, freshwater pathways from the Arctic Ocean to the North Atlantic are investigated using a 1 degree global model. An EOF analysis of modeled sea surface height (SSH) demonstrates that while the second mode accounts for only 15% of the variability, the associated geostrophic currents are strongly correlated with freshwater exports through CAA (Canadian Arctic Archipelago; r = 0.75), Nares Strait (r = 0.77) and Fram Strait (r = -0.60). Separation of sea level into contributing parts allows us to show that the EOF1 is primarily a barotropic mode reflecting variability in bottom pressure equivalent sea level, while the EOF2 mode reflects changes in steric height in the Arctic Basin. This second mode is linked to momentum wind driven surface current, and dominates the Arctic Ocean freshwater exports. Both the Arctic Oscillation and Arctic Dipole atmospheric indices are shown to be linked to Arctic Ocean freshwater exports, with the forcing associated with the Arctic Dipole reflecting the out-of-phase relationship between transports through the CAA and those through Fram Strait. Finally, observed freshwater transport variation through the CAA is found to be strongly correlated with tide gauge data from the Beaufort Sea coast (r = 0.81), and with the EOF2 mode of GRACE bottom pressure data (r = 0.85) on inter-annual timescales.

Overview of Continuing Education Financing and Budgeting.

ERIC Educational Resources Information Center

Shipp, Travis

1982-01-01

Continuing education agencies have cycles of financial activities that are all parts of financial management, including obtaining funding and venture capital, setting fees, and controlling costs for cost recovery. (Author/SSH)

Epistemology, culture, justice and power: non-bioscientific knowledge for medical training.

PubMed

Kuper, Ayelet; Veinot, Paula; Leavitt, Jennifer; Levitt, Sarah; Li, Amanda; Goguen, Jeannette; Schreiber, Martin; Richardson, Lisa; Whitehead, Cynthia R

2017-02-01

While medical curricula were traditionally almost entirely comprised of bioscientific knowledge, widely accepted competency frameworks now make clear that physicians must be competent in far more than biomedical knowledge and technical skills. For example, of the influential CanMEDS roles, six are conceptually based in the social sciences and humanities (SSH). Educators frequently express uncertainty about what to teach in this area. This study concretely identifies the knowledge beyond bioscience needed to support the training of physicians competent in the six non-Medical Expert CanMEDS roles. We interviewed 58 non-clinician university faculty members with doctorates in over 20 SSH disciplines. We abstracted our transcripts (meaning condensation, direct quotations) resulting in approximately 300 pages of data which we coded using top-down (by CanMEDS role) and bottom-up (thematically) approaches and analysed within a critical constructivist framework. Participants and clinicians with SSH PhDs member-checked and refined our results. Twelve interrelated themes were evident in the data. An understanding of epistemology, including the constructed nature of social knowledge, was seen as the foundational theme without which the others could not be taught or understood. Our findings highlighted three anchoring themes (Justice, Power, Culture), all of which link to eight more specific themes concerning future physicians' relationships to the world and the self. All 12 themes were cross-cutting, in that each related to all six non-Medical Expert CanMEDS roles. The data also provided many concrete examples of potential curricular content. There is a definable body of SSH knowledge that forms the academic underpinning for important physician competencies and is outside the experience of most medical educators. Curricular change incorporating such content is necessary if we are to strengthen the non-Medical Expert physician competencies. Our findings, particularly our cross-cutting themes, also provide a pedagogically useful mechanism for holistically teaching the underpinnings of physician competence. We are now implementing our findings into medical curricula. © 2016 John Wiley & Sons Ltd and The Association for the Study of Medical Education.

New Perspectives on Southern Ocean Frontal Variability

NASA Astrophysics Data System (ADS)

Chapman, Christopher

2017-04-01

The frontal structure of the Southern Ocean is investigated using a the Wavelet/Higher Order Statistics Enhancement (WHOSE) frontal detection method, introduced in Chapman (2014). This methodology is applied to 21 years of daily gridded sea-surface height (SSH) data to obtain daily maps of the locations of the fronts. By forming frontal occurrence frequency maps and then approximating these occurrence-maps by a superposition of simple functions, the time-mean locations of the fronts, as well as a measure of their capacity to meander, are obtained and related to the frontal locations found by previous studies. The spatial and temporal variability of the frontal structure is then considered. The number of fronts is found to be highly variable throughout the Southern Ocean, increasing (`splitting') downstream of large bathymetric features and decreasing (`merging') in regions where the fronts are tightly controlled by the underlying topography. In contrast, frontal meandering remains relatively constant. Contrary to many previous studies, little no southward migration of the fronts over the 1993-2014 time period is found, and there is only weak sensitivity to atmospheric forcing related to SAM or ENSO. Finally, the implications of splitting and merging for the flux of tracers will be discussed.

Upper Ocean Meso-Submesoscale Eddy Variability in the Northwestern Pacific from Repeat ADCP Measurements and 1/48-deg MITgcm Simulation

NASA Astrophysics Data System (ADS)

Qiu, B.; Nakano, T.; Chen, S.; Wang, J.; Fu, L. L.; Klein, P.

2016-12-01

With the use of Ka-band radar interferometry, the Surface Water and Ocean Topography (SWOT) satellite will improve the measured sea surface height (SSH) resolution down to the spectral wavelength of 15km, allowing us to investigate for the first time the upper oceancirculation variability at the submesoscale range on the global scale. By analyzing repeat shipboardAcoustic Doppler Current Profiler (ADCP) measurements along 137°E, as well as the 1/48-deg MITgcm simulation output, in the northwest Pacific, we demonstrate that the observed/modeled upper ocean velocities are comprised of balanced geostrophic motions and unbalanced ageostrophic wave motions. The length scale, Lc, that separates the dominance between these two types of motions is found to depend sensitively on the energy level of local mesoscale eddy variability. In the eddy-abundant western boundary current region of Kuroshio, Lc can be shorter than 15km, whereas Lc exceeds 200km along the path of relatively stable North Equatorial Current. Judicious separation between the balanced and unbalanced surface ocean signals will both be a challenge and opportunity for the SWOT mission.

HRD and the Steel-Collar Worker.

ERIC Educational Resources Information Center

Byham, William C.

1984-01-01

The author argues that, as robots begin to take over more and more industrial tasks, the impact on human workers at all levels will increase geometrically and trainers will play a strategic role. (SSH)

Comparative analysis of differential gene expression in kidney tissues of moribund and surviving crucian carp (Carassius auratus gibelio) in response to cyprinid herpesvirus 2 infection.

PubMed

Xu, Lijuan; Podok, Patarida; Xie, Jun; Lu, Liqun

2014-08-01

Cyprinid herpesvirus 2 (CyHV-2) has recently been associated with high mortality of cultured crucian carp (Carassius auratus gibelio) in eastern China. In this study, we established a real-time PCR method to confirm viral infection of crucian carp and to quantify CyHV-2 particles obtained by sucrose gradient centrifugation from diseased fish. Virus-free crucian carp were artificially infected with CyHV-2 using an injection method, which resulted in a dose-dependent death rate. In situ hybridization analysis indicated that there was extensive viral replication and lysis in the kidneys of moribund fish, in contrast to very limited replication in surviving fish. To probe the host immune response to viral infection at the level of gene expression, we identified virus-responsive genes using suppression subtractive hybridization (SSH) in head kidney tissues, the principal immune organ of fish, from moribund and surviving crucian carps after viral challenge. From the moribund SSH library, 363 expressed sequence tags (ESTs) were clustered to 234 unigenes (including 15 singletons and 45 contigs). From the survivor SSH library, 599 ESTs was clustered to 549 unigenes (including 107 singletons and 105 contigs). We further analyzed the transcriptional levels of all immune-related genes by quantitative real-time RT-PCR, which confirmed the upregulation of 90.48 % of these genes. The significantly upregulated immune-related genes identified in this study can serve as candidate marker genes for acute CyHV-2 infection.

Cadmium induces cadmium-tolerant gene expression in the filamentous fungus Trichoderma harzianum.

PubMed

Cacciola, Santa O; Puglisi, Ivana; Faedda, Roberto; Sanzaro, Vincenzo; Pane, Antonella; Lo Piero, Angela R; Evoli, Maria; Petrone, Goffredo

2015-11-01

The filamentous fungus Trichoderma harzianum, strain IMI 393899, was able to grow in the presence of the heavy metals cadmium and mercury. The main objective of this research was to study the molecular mechanisms underlying the tolerance of the fungus T. harzianum to cadmium. The suppression subtractive hybridization (SSH) method was used for the characterization of the genes of T. harzianum implicated in cadmium tolerance compared with those expressed in the response to the stress induced by mercury. Finally, the effects of cadmium exposure were also validated by measuring the expression levels of the putative genes coding for a glucose transporter, a plasma membrane ATPase, a Cd(2+)/Zn(2+) transporter protein and a two-component system sensor histidine kinase YcbA, by real-time-PCR. By using the aforementioned SSH strategy, it was possible to identify 108 differentially expressed genes of the strain IMI 393899 of T. harzianum grown in a mineral substrate with the addition of cadmium. The expressed sequence tags identified by SSH technique were encoding different genes that may be involved in different biological processes, including those associated to primary and secondary metabolism, intracellular transport, transcription factors, cell defence, signal transduction, DNA metabolism, cell growth and protein synthesis. Finally, the results show that in the mechanism of tolerance to cadmium a possible signal transduction pathway could activate a Cd(2+)/Zn(2+) transporter protein and/or a plasma membrane ATPase that could be involved in the compartmentalization of cadmium inside the cell.

A rigorous assessment of tree height measurements obtained using airborne LIDAR and conventional field methods.

Treesearch

Hans-Erik Andersen; Stephen E. Reutebuch; Robert J. McGaughey

2006-01-01

Tree height is an important variable in forest inventory programs but is typically time-consuming and costly to measure in the field using conventional techniques. Airborne light detection and ranging (LIDAR) provides individual tree height measurements that are highly correlated with field-derived measurements, but the imprecision of conventional field techniques does...

Bas-relief generation using adaptive histogram equalization.

PubMed

Sun, Xianfang; Rosin, Paul L; Martin, Ralph R; Langbein, Frank C

2009-01-01

An algorithm is presented to automatically generate bas-reliefs based on adaptive histogram equalization (AHE), starting from an input height field. A mesh model may alternatively be provided, in which case a height field is first created via orthogonal or perspective projection. The height field is regularly gridded and treated as an image, enabling a modified AHE method to be used to generate a bas-relief with a user-chosen height range. We modify the original image-contrast-enhancement AHE method to use gradient weights also to enhance the shape features of the bas-relief. To effectively compress the height field, we limit the height-dependent scaling factors used to compute relative height variations in the output from height variations in the input; this prevents any height differences from having too great effect. Results of AHE over different neighborhood sizes are averaged to preserve information at different scales in the resulting bas-relief. Compared to previous approaches, the proposed algorithm is simple and yet largely preserves original shape features. Experiments show that our results are, in general, comparable to and in some cases better than the best previously published methods.

System Access | High-Performance Computing | NREL

Science.gov Websites

) systems. Photo of man looking at a large computer monitor with a colorful, visual display of data. System secure shell gateway (SSH) or virtual private network (VPN). User Accounts Request a user account

Automatic rice crop height measurement using a field server and digital image processing.

PubMed

Sritarapipat, Tanakorn; Rakwatin, Preesan; Kasetkasem, Teerasit

2014-01-07

Rice crop height is an important agronomic trait linked to plant type and yield potential. This research developed an automatic image processing technique to detect rice crop height based on images taken by a digital camera attached to a field server. The camera acquires rice paddy images daily at a consistent time of day. The images include the rice plants and a marker bar used to provide a height reference. The rice crop height can be indirectly measured from the images by measuring the height of the marker bar compared to the height of the initial marker bar. Four digital image processing steps are employed to automatically measure the rice crop height: band selection, filtering, thresholding, and height measurement. Band selection is used to remove redundant features. Filtering extracts significant features of the marker bar. The thresholding method is applied to separate objects and boundaries of the marker bar versus other areas. The marker bar is detected and compared with the initial marker bar to measure the rice crop height. Our experiment used a field server with a digital camera to continuously monitor a rice field located in Suphanburi Province, Thailand. The experimental results show that the proposed method measures rice crop height effectively, with no human intervention required.

Leisure Time of Husbands and Wives.

ERIC Educational Resources Information Center

Nickols, Sharon Y.; Abdel-Ghany, Mohamed

1983-01-01

The results of this analysis of leisure time of husband and wife indicate the importance of family roles and relationships in the allocation of time to leisure. Previous examinations have seldom considered leisure time in a family context. (SSH)

The Causes and Costs of Promotion Trauma.

ERIC Educational Resources Information Center

Darling, Lu Ann W.; McGrath, Loraine G.

1983-01-01

Minimizing the stress that nurses experience after a promotion requires an understanding of the factors associated with moving up the managerial ladder. Knowing these factors, nursing administrators can plan their programs to support their managers in transition. (SSH)

Perceptions of the Value of Extended Service in Horticulture.

ERIC Educational Resources Information Center

Watkins, Larae; Miller, Larry E.

1983-01-01

This study suggests the need for several improvements in the summer vocational horticulture education programs. Knowledge of the summer program, its aims, and the teacher's responsibilities appears to be lacking in the groups studied. (SSH)

GPCR-mediated PLCβγ/PKCβ/PKD signaling pathway regulates the cofilin phosphatase slingshot 2 in neutrophil chemotaxis

PubMed Central

Xu, Xuehua; Gera, Nidhi; Li, Hongyan; Yun, Michelle; Zhang, Liyong; Wang, Youhong; Wang, Q. Jane; Jin, Tian

2015-01-01

Chemotaxis requires precisely coordinated polymerization and depolymerization of the actin cytoskeleton at leading fronts of migrating cells. However, GPCR activation-controlled F-actin depolymerization remains largely elusive. Here, we reveal a novel signaling pathway, including Gαi, PLC, PKCβ, protein kinase D (PKD), and SSH2, in control of cofilin phosphorylation and actin cytoskeletal reorganization, which is essential for neutrophil chemotaxis. We show that PKD is essential for neutrophil chemotaxis and that GPCR-mediated PKD activation depends on PLC/PKC signaling. More importantly, we discover that GPCR activation recruits/activates PLCγ2 in a PI3K-dependent manner. We further verify that PKCβ specifically interacts with PKD1 and is required for chemotaxis. Finally, we identify slingshot 2 (SSH2), a phosphatase of cofilin (actin depolymerization factor), as a target of PKD1 that regulates cofilin phosphorylation and remodeling of the actin cytoskeleton during neutrophil chemotaxis. PMID:25568344

Mitogenome Diversity in Sardinians: A Genetic Window onto an Island's Past

PubMed Central

Olivieri, Anna; Sidore, Carlo; Achilli, Alessandro; Angius, Andrea; Posth, Cosimo; Furtwängler, Anja; Brandini, Stefania; Capodiferro, Marco Rosario; Gandini, Francesca; Zoledziewska, Magdalena; Pitzalis, Maristella; Maschio, Andrea; Busonero, Fabio; Lai, Luca; Skeates, Robin; Gradoli, Maria Giuseppina; Beckett, Jessica; Marongiu, Michele; Mazzarello, Vittorio; Marongiu, Patrizia; Rubino, Salvatore; Rito, Teresa; Macaulay, Vincent; Semino, Ornella; Pala, Maria; Abecasis, Gonçalo R.; Schlessinger, David; Conde-Sousa, Eduardo; Soares, Pedro; Richards, Martin B.

2017-01-01

Sardinians are “outliers” in the European genetic landscape and, according to paleogenomic nuclear data, the closest to early European Neolithic farmers. To learn more about their genetic ancestry, we analyzed 3,491 modern and 21 ancient mitogenomes from Sardinia. We observed that 78.4% of modern mitogenomes cluster into 89 haplogroups that most likely arose in situ. For each Sardinian-specific haplogroup (SSH), we also identified the upstream node in the phylogeny, from which non-Sardinian mitogenomes radiate. This provided minimum and maximum time estimates for the presence of each SSH on the island. In agreement with demographic evidence, almost all SSHs coalesce in the post-Nuragic, Nuragic and Neolithic-Copper Age periods. For some rare SSHs, however, we could not dismiss the possibility that they might have been on the island prior to the Neolithic, a scenario that would be in agreement with archeological evidence of a Mesolithic occupation of Sardinia. PMID:28177087

Thrombospondin Type-1 Repeat Domain-Containing Proteins Are Strongly Expressed in the Head Region of Hydra.

PubMed

Hamaguchi-Hamada, Kayoko; Kurumata-Shigeto, Mami; Minobe, Sumiko; Fukuoka, Nozomi; Sato, Manami; Matsufuji, Miyuki; Koizumi, Osamu; Hamada, Shun

2016-01-01

The head region of Hydra, the hypostome, is a key body part for developmental control and the nervous system. We herein examined genes specifically expressed in the head region of Hydra oligactis using suppression subtractive hybridization (SSH) cloning. A total of 1414 subtracted clones were sequenced and found to be derived from at least 540 different genes by BLASTN analyses. Approximately 25% of the subtracted clones had sequences encoding thrombospondin type-1 repeat (TSR) domains, and were derived from 17 genes. We identified 11 TSR domain-containing genes among the top 36 genes that were the most frequently detected in our SSH library. Whole-mount in situ hybridization analyses confirmed that at least 13 out of 17 TSR domain-containing genes were expressed in the hypostome of Hydra oligactis. The prominent expression of TSR domain-containing genes suggests that these genes play significant roles in the hypostome of Hydra oligactis.

Data Quality Assessment of In Situ and Altimeter Observations Through Two-Way Intercomparison Methods

NASA Astrophysics Data System (ADS)

Guinehut, Stephanie; Valladeau, Guillaume; Legeais, Jean-Francois; Rio, Marie-Helene; Ablain, Michael; Larnicol, Gilles

2013-09-01

This proceeding presents an overview of the two-way inter-comparison activities performed at CLS for both space and in situ observation agencies and why this activity is a required step to obtain accurate and homogenous data sets that can then be used together for climate studies or in assimilation/validation tools. We first describe the work performed in the frame of the SALP program to assess the stability of altimeter missions through SSH comparisons with tide gauges (GLOSS/CLIVAR network). Then, we show how the SSH comparison between the Argo array and altimeter time series allows the detection of drifts or jumps in altimeter (SALP program) but also for some Argo floats (Ifremer/Coriolis center). Lastly, we describe how the combine use of altimeter and wind observations helps the detection of drogue loss of surface drifting buoys (GDP network) and allow the computation of a correction term for wind slippage.

47 CFR 73.189 - Minimum antenna heights or field strength requirements.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 47 Telecommunication 4 2012-10-01 2012-10-01 false Minimum antenna heights or field strength... RADIO SERVICES RADIO BROADCAST SERVICES AM Broadcast Stations § 73.189 Minimum antenna heights or field..., frequency, or transmitter location must also request authority to install a new antenna system or to make...

47 CFR 73.189 - Minimum antenna heights or field strength requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 47 Telecommunication 4 2014-10-01 2014-10-01 false Minimum antenna heights or field strength... RADIO SERVICES RADIO BROADCAST SERVICES AM Broadcast Stations § 73.189 Minimum antenna heights or field..., frequency, or transmitter location must also request authority to install a new antenna system or to make...

47 CFR 73.189 - Minimum antenna heights or field strength requirements.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 47 Telecommunication 4 2010-10-01 2010-10-01 false Minimum antenna heights or field strength... RADIO SERVICES RADIO BROADCAST SERVICES AM Broadcast Stations § 73.189 Minimum antenna heights or field..., frequency, or transmitter location must also request authority to install a new antenna system or to make...

47 CFR 73.189 - Minimum antenna heights or field strength requirements.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 47 Telecommunication 4 2011-10-01 2011-10-01 false Minimum antenna heights or field strength... RADIO SERVICES RADIO BROADCAST SERVICES AM Broadcast Stations § 73.189 Minimum antenna heights or field..., frequency, or transmitter location must also request authority to install a new antenna system or to make...

47 CFR 73.189 - Minimum antenna heights or field strength requirements.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 47 Telecommunication 4 2013-10-01 2013-10-01 false Minimum antenna heights or field strength... RADIO SERVICES RADIO BROADCAST SERVICES AM Broadcast Stations § 73.189 Minimum antenna heights or field..., frequency, or transmitter location must also request authority to install a new antenna system or to make...

Multi-Scale 4DVAR Assimilation of Glider Teams on the North Carolina Shelf

NASA Astrophysics Data System (ADS)

Osborne, J. J. V.; Carrier, M.; Book, J. W.; Barron, C. N.; Rice, A. E.; Rowley, C. D.; Smedstad, L.; Souopgui, I.; Teague, W. J.

2017-12-01

We demonstrate a method to assimilate glider profile data from multiple gliders in close proximity ( 10 km or less). Gliders were deployed in a field experiment from 17 May until 4 June 2017, north of Cape Hatteras and inshore of the Gulf Stream. Gliders were divided into two teams, generally two or three gliders per team. One team was tasked with station keeping and the other with moving and sampling regions of high variability in temperature and salinity. Glider data are assimilated into the Relocatable Navy Coastal Ocean Model (RELO NCOM) with four dimensional variational assimilation (NCOM-4DVAR). RELO NCOM is used by the US Navy to predict the ocean. RELO NCOM is a baroclinic, Boussinesq, free-surface, and hydrostatic ocean model with a flexible sigma-z vertical coordinate. Two domains are used, one focused north and one focused south of Cape Hatteras. The domains overlap near the gliders, thus providing two forecasts near the gliders. Both domains have 1 km horizontal resolution. Data are assimilated in a newly-developed multi-scale data-processing and assimilating approach using NCOM-4DVAR. This enables NCOM-4DVAR to use many more observations than standard NCOM-4DVAR, improving the analysis and forecast. Assimilation experiments use station-keeping glider data, moving glider data, or all glider data. Sea surface temperature (SST) data and satellite altimeter (SSH) data are also assimilated. An additional experiment omits glider data but still assimilates SST and SSH data. Conductivity, temperature, and depth (CTD) profiles from the R/V Savannah are used for validation, including data from an underway CTD (UCTD). Data from glider teams have the potential to significantly improve model forecasts. Missions using teams of gliders can be planned to maximize data assimilation for optimal impact on model predictions.

Web-based Altimeter Service

NASA Astrophysics Data System (ADS)

Callahan, P. S.; Wilson, B. D.; Xing, Z.; Raskin, R. G.

2010-12-01

We have developed a web-based system to allow updating and subsetting of TOPEX data. The Altimeter Service will be operated by PODAAC along with their other provision of oceanographic data. The Service could be easily expanded to other mission data. An Altimeter Service is crucial to the improvement and expanded use of altimeter data. A service is necessary for altimetry because the result of most interest - sea surface height anomaly (SSHA) - is composed of several components that are updated individually and irregularly by specialized experts. This makes it difficult for projects to provide the most up-to-date products. Some components are the subject of ongoing research, so the ability for investigators to make products for comparison or sharing is important. The service will allow investigators/producers to get their component models or processing into widespread use much more quickly. For coastal altimetry, the ability to subset the data to the area of interest and insert specialized models (e.g., tides) or data processing results is crucial. A key part of the Altimeter Service is having data producers provide updated or local models and data. In order for this to succeed, producers need to register their products with the Altimeter Service and to provide the product in a form consistent with the service update methods. We will describe the capabilities of the web service and the methods for providing new components. Currently the Service is providing TOPEX GDRs with Retracking (RGDRs) in netCDF format that has been coordinated with Jason data. Users can add new orbits, tide models, gridded geophysical fields such as mean sea surface, and along-track corrections as they become available and are installed by PODAAC. The updated fields are inserted into the netCDF files while the previous values are retained for comparison. The Service will also generate SSH and SSHA. In addition, the Service showcases a feature that plots any variable from files in netCDF. The research described here was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.

Correlations of TOMS total ozone data (Nimbus-7 satellite) with tropopause height

NASA Technical Reports Server (NTRS)

Munteanu, Marie-Jeanne

1987-01-01

Two correlation studies of Total Ozone Mapping Spectrometer (TOMS) data with tropopause height from radiosondes performed over Europe showed a correlation coefficient of 0.94 and 0.96. As a result, the rms error in the prediction of tropopause height from total ozone was found to be 20 mb. Correlation between tropopause height and TOMS data was the highest of all the other correlations with variables directly derived from radiosondes or simulated thermal radiances over the location of radiosondes. Comparing the two dimensional fields of TOMS, tropopause height from radiosondes and tropopause height field from TIROS-N retrievals, we can say that the first field is much closer to the true field from radiosondes than the third. The correlation coefficient for a ten-day study between TOMS data and tropopause height from radiosondes is between 0.85 and 0.9 for 30-70N. Tropopause analysis provided by GLA model also shows a very high correlation with TOMS data.

Identification and verification of differentially expressed genes in the caprine hypothalamic-pituitary-gonadal axis that are associated with litter size.

PubMed

Feng, Tao; Cao, Gui-Ling; Chu, Ming-Xing; Di, Ran; Huang, Dong-Wei; Liu, Qiu-Yue; Pan, Zhang-Yuan; Jin, Mei; Zhang, Ying-Jie; Li, Ning

2015-02-01

Litter size is a favorable economic trait for the goat industry, but remains a complex trait controlled by multiple genes in multiple organs. Several genes have been identified that may affect embryo survival, follicular development, and the health of fetuses during pregnancy. Jining Grey goats demonstrate the largest litter size among goat breeds indigenous to China. In order to better understand the genetic basis of this trait, six suppression subtractive hybridization (SSH) cDNA libraries were constructed using pooled mRNAs from hypothalamuses, pituitaries, and ovaries of sexually mature and adult polytocous Jining Grey goats, as testers, versus the pooled corresponding mRNAs of monotocous Liaoning Cashmere goats, as drivers. A total of 1,458 true-positive clones--including 955 known genes and 481 known and 22 unknown expressed sequence tags--were obtained from the SSH libraries by sequencing and alignment. The known genes were categorized into cellular processes and signaling information storage and processing, and metabolism. Three genes (FTH1, GH, and SAA) were selected to validate the SSH results by quantitative real-time PCR; all three were up-regulated in the corresponding tissues in the tester group indicating that these are candidate genes associated with the large litter size of Jining Grey goats. Several other identified genes may affect embryo survival, follicular development, and health during pregnancy. This study provides insights into the mechanistic basis by which the caprine hypothalamic-pituitary-gonadal axis affects reproductive traits and provides a theoretical basis for goat production and breeding. © 2015 Wiley Periodicals, Inc.

Differential gene expression in whitefly Bemisia tabaci-infested tomato (Solanum lycopersicum) plants at progressing developmental stages of the insect's life cycle.

PubMed

Estrada-Hernández, María Gloria; Valenzuela-Soto, José Humberto; Ibarra-Laclette, Enrique; Délano-Frier, John Paul

2009-09-01

A suppression-subtractive-hybridization (SSH) strategy was used to identify genes whose expression was modified in response to virus-free whitefly Bemisia tabaci (Bt, biotype A) infestation in tomato (Solanum lycopersicum) plants. Thus, forward and reverse SSH gene libraries were generated at four points in the whitefly's life cycle, namely at (1) 2 days (adult feeding and oviposition: phase I); (2) 7 days (mobile crawler stage: phase II); (3) 12 days (second to third instar nymphal transition: phase III) and (4) 18 days (fourth instar nymphal stage: phase IV). The 169 genes with altered expression (up and downregulated) that were identified in the eight generated SSH libraries, together with 75 additional genes that were selected on the basis of their involvement in resistance responses against phytofagous insects and pathogens, were printed on a Nexterion(®) Slide MPX 16 to monitor their pattern of expression at the above phases. The results indicated that Bt infestation in tomato led to distinctive phase-specific expression/repression patterns of several genes associated predominantly with photosynthesis, senescence, secondary metabolism and (a)biotic stress. Most of the gene expression modifications were detected in phase III, coinciding with intense larval feeding, whereas fewer changes were detected in phases I and IV. These results complement previously reported gene expression profiles in Bt-infested tomato and Arabidopisis, and support and expand the opinion that Bt infestation leads to the downregulation of specific defense responses in addition to those controlled by jasmonic acid. Copyright © Physiologia Plantarum 2009.

Social Security.

ERIC Educational Resources Information Center

Social and Labour Bulletin, 1983

1983-01-01

This group of articles discusses a variety of studies related to social security and retirement benefits. These studies are related to both developing and developed nations and are also concerned with studying work conditions and government role in administering a democratic social security system. (SSH)

Identification and computational annotation of genes differentially expressed in pulp development of Cocos nucifera L. by suppression subtractive hybridization

PubMed Central

2014-01-01

Background Coconut (Cocos nucifera L.) is one of the world’s most versatile, economically important tropical crops. Little is known about the physiological and molecular basis of coconut pulp (endosperm) development and only a few coconut genes and gene product sequences are available in public databases. This study identified genes that were differentially expressed during development of coconut pulp and functionally annotated these identified genes using bioinformatics analysis. Results Pulp from three different coconut developmental stages was collected. Four suppression subtractive hybridization (SSH) libraries were constructed (forward and reverse libraries A and B between stages 1 and 2, and C and D between stages 2 and 3), and identified sequences were computationally annotated using Blast2GO software. A total of 1272 clones were obtained for analysis from four SSH libraries with 63% showing similarity to known proteins. Pairwise comparing of stage-specific gene ontology ids from libraries B-D, A-C, B-C and A-D showed that 32 genes were continuously upregulated and seven downregulated; 28 were transiently upregulated and 23 downregulated. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis showed that 1-acyl-sn-glycerol-3-phosphate acyltransferase (LPAAT), phospholipase D, acetyl-CoA carboxylase carboxyltransferase beta subunit, 3-hydroxyisobutyryl-CoA hydrolase-like and pyruvate dehydrogenase E1 β subunit were associated with fatty acid biosynthesis or metabolism. Triose phosphate isomerase, cellulose synthase and glucan 1,3-β-glucosidase were related to carbohydrate metabolism, and phosphoenolpyruvate carboxylase was related to both fatty acid and carbohydrate metabolism. Of 737 unigenes, 103 encoded enzymes were involved in fatty acid and carbohydrate biosynthesis and metabolism, and a number of transcription factors and other interesting genes with stage-specific expression were confirmed by real-time PCR, with validation of the SSH results as high as 66.6%. Based on determination of coconut endosperm fatty acids content by gas chromatography–mass spectrometry, a number of candidate genes in fatty acid anabolism were selected for further study. Conclusion Functional annotation of genes differentially expressed in coconut pulp development helped determine the molecular basis of coconut endosperm development. The SSH method identified genes related to fatty acids, carbohydrate and secondary metabolites. The results will be important for understanding gene functions and regulatory networks in coconut fruit. PMID:25084812

Identification and computational annotation of genes differentially expressed in pulp development of Cocos nucifera L. by suppression subtractive hybridization.

PubMed

Liang, Yuanxue; Yuan, Yijun; Liu, Tao; Mao, Wei; Zheng, Yusheng; Li, Dongdong

2014-08-02

Coconut (Cocos nucifera L.) is one of the world's most versatile, economically important tropical crops. Little is known about the physiological and molecular basis of coconut pulp (endosperm) development and only a few coconut genes and gene product sequences are available in public databases. This study identified genes that were differentially expressed during development of coconut pulp and functionally annotated these identified genes using bioinformatics analysis. Pulp from three different coconut developmental stages was collected. Four suppression subtractive hybridization (SSH) libraries were constructed (forward and reverse libraries A and B between stages 1 and 2, and C and D between stages 2 and 3), and identified sequences were computationally annotated using Blast2GO software. A total of 1272 clones were obtained for analysis from four SSH libraries with 63% showing similarity to known proteins. Pairwise comparing of stage-specific gene ontology ids from libraries B-D, A-C, B-C and A-D showed that 32 genes were continuously upregulated and seven downregulated; 28 were transiently upregulated and 23 downregulated. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis showed that 1-acyl-sn-glycerol-3-phosphate acyltransferase (LPAAT), phospholipase D, acetyl-CoA carboxylase carboxyltransferase beta subunit, 3-hydroxyisobutyryl-CoA hydrolase-like and pyruvate dehydrogenase E1 β subunit were associated with fatty acid biosynthesis or metabolism. Triose phosphate isomerase, cellulose synthase and glucan 1,3-β-glucosidase were related to carbohydrate metabolism, and phosphoenolpyruvate carboxylase was related to both fatty acid and carbohydrate metabolism. Of 737 unigenes, 103 encoded enzymes were involved in fatty acid and carbohydrate biosynthesis and metabolism, and a number of transcription factors and other interesting genes with stage-specific expression were confirmed by real-time PCR, with validation of the SSH results as high as 66.6%. Based on determination of coconut endosperm fatty acids content by gas chromatography-mass spectrometry, a number of candidate genes in fatty acid anabolism were selected for further study. Functional annotation of genes differentially expressed in coconut pulp development helped determine the molecular basis of coconut endosperm development. The SSH method identified genes related to fatty acids, carbohydrate and secondary metabolites. The results will be important for understanding gene functions and regulatory networks in coconut fruit.

Survival and height growth of northern white-cedar from 18 provenances

Treesearch

Richard M. Jeffers

1976-01-01

Northern white-cedar from 18 provenances was evaluated for total height in the nursery and for survival and total height in two field plantings in northern Wisconsin and in western Upper Michigan. There were significant differences among provenances in survival at one location and in height at both field locations 5 years after planting; there were no differences among...

Robotics: A New Challenge For Industrial Arts.

ERIC Educational Resources Information Center

Lovedahl, Gerald G.

1983-01-01

The author argues that jobs in the future will depend less on manual skill and more on perceptual aptitude, formal knowledge, and precision. Industrial arts classes must include robotics in their curriculum if they intend to reflect accurately American industry. (Author/SSH)

A comparison of forest height prediction from FIA field measurement and LiDAR data via spatial models

Treesearch

Yuzhen Li

2009-01-01

Previous studies have shown a high correspondence between tree height measurements acquired from airborne LiDAR and that those measured using conventional field techniques. Though these results are very promising, most of the studies were conducted over small experimental areas and tree height was measured carefully or using expensive instruments in the field, which is...

Automated detection of Lagrangian eddies and coherent transport of heat and salinity in the Agulhas leakage

NASA Astrophysics Data System (ADS)

Huhn, Florian; Haller, George

2014-05-01

Haller and Beron-Vera(2013) have recently introduced a new objective method to detect coherent Lagrangian eddies in turbulence. They find that closed null-geodesics of a generalized Green-Lagrange strain tensor act as coherent Lagrangian eddy boundaries, showing near-zero and uniform material stretching. We make use of this method to develop an automated detection procedure for coherent Lagrangian eddies in large-scale ocean data. We apply our results to a recent 3D general circulation model, the Southern Ocean State Estimate (SOSE), with focus on the South Atlantic Ocean and the inter-ocean exchange between the Indian and Atlantic ocean. We detect a large number of coherent Lagrangian eddies and present statistics of their properties. The largest and most circular eddy boundaries represent Lagrangian Agulhas rings. Circular regions inside these rings with higher temperature and salinity than the surrounding waters can be explained by the coherent eddy boundaries that enclose and isolate the eddy interiors. We compare eddy boundaries at different depths with eddy boundaries obtained from geostrophic velocities derived from the model's sea surface height (SSH). The transport of mass, heat and salinity enclosed by coherent eddies through a section in the Cape basin is quantified and compared to the non-coherent transport by the background flow.

The Occurrence of Tidal Hybrid Kelvin-Edge Waves in the Global Ocean

NASA Astrophysics Data System (ADS)

Kaur, H.; Buijsman, M. C.; Yankovsky, A. E.; Zhang, T.; Jeon, C. H.

2017-12-01

This study presents the analysis of hybrid Kelvin-edge waves on the continental shelves in a global ocean model. Our objective is to find areas where the transition occurs from Kelvin waves to hybrid Kelvin-edge waves. The change in continental shelf width may convert a Kelvin wave into a hybrid Kelvin-edge wave. In this process the group velocity reaches a minimum and tidal energy is radiated on and/or offshore [Zhang 2016]. We extract M2 SSH (Sea Surface Height) and velocity from the Hybrid Coordinate Ocean Model (HYCOM) and calculate barotropic energy fluxes. We analyze these three areas: the Bay of Biscay, the Amazon Shelf and North West Africa. In these three regions, the continental shelf widens in the propagation direction and the alongshore flux changes its direction towards the coast. A transect is taken at different points in these areas to compute the dispersion relations of the waves on the continental shelf. In model simulations, we change the bathymetry of the Bay of Biscay to study the behavior of the hybrid Kelvin-edge waves. BibliographyZhang, T., and A. E Yankovsky. (2016), On the nature of cross-isobath energy fluxes in topographically modified barotropic semidiurnal Kelvin waves, J. Geophys. Res. Oceans, 121, 3058-3074, doi:10.1002/2015JC011617.

The impact of wave-induced Coriolis-Stokes forcing on satellite-derived ocean surface currents

NASA Astrophysics Data System (ADS)

Hui, Zhenli; Xu, Yongsheng

2016-01-01

Ocean surface currents estimated from the satellite data consist of two terms: Ekman currents from the wind stress and geostrophic currents from the sea surface height (SSH). But the classical Ekman model does not consider the wave effects. By taking the wave-induced Coriolis-Stokes forcing into account, the impact of waves (primarily the Stokes drift) on ocean surface currents is investigated and the wave-modified currents are formed. The products are validated by comparing with OSCAR currents and Lagrangian drifter velocity. The result shows that our products with the Stokes drift are better adapted to the in situ Lagrangian drifter currents. Especially in the Southern Ocean region (40°S-65°S), 90% (91%) of the zonal (meridional) currents have been improved compared with currents that do not include Stokes drift. The correlation (RMSE) in the Southern Ocean has also increased (decreased) from 0.78 (13) to 0.81 (10.99) for the zonal component and 0.76 (10.87) to 0.79 (10.09) for the meridional component. This finding provides the evidence that waves indeed play an important role in the ocean circulation, and need to be represented in numerical simulations of the global ocean circulation. This article was corrected on 10 FEB 2016. See the end of the full text for details.

Simulating multi-scale oceanic processes around Taiwan on unstructured grids

NASA Astrophysics Data System (ADS)

Yu, Hao-Cheng; Zhang, Yinglong J.; Yu, Jason C. S.; Terng, C.; Sun, Weiling; Ye, Fei; Wang, Harry V.; Wang, Zhengui; Huang, Hai

2017-11-01

We validate a 3D unstructured-grid (UG) model for simulating multi-scale processes as occurred in Northwestern Pacific around Taiwan using recently developed new techniques (Zhang et al., Ocean Modeling, 102, 64-81, 2016) that require no bathymetry smoothing even for this region with prevalent steep bottom slopes and many islands. The focus is on short-term forecast for several months instead of long-term variability. Compared with satellite products, the errors for the simulated Sea-surface Height (SSH) and Sea-surface Temperature (SST) are similar to a reference data-assimilated global model. In the nearshore region, comparison with 34 tide gauges located around Taiwan indicates an average RMSE of 13 cm for the tidal elevation. The average RMSE for SST at 6 coastal buoys is 1.2 °C. The mean transport and eddy kinetic energy compare reasonably with previously published values and the reference model used to provide boundary and initial conditions. The model suggests ∼2-day interruption of Kuroshio east of Taiwan during a typhoon period. The effect of tidal mixing is shown to be significant nearshore. The multi-scale model is easily extendable to target regions of interest due to its UG framework and a flexible vertical gridding system, which is shown to be superior to terrain-following coordinates.

RanBP9 at the intersection between cofilin and Aβ pathologies: rescue of neurodegenerative changes by RanBP9 reduction.

PubMed

Woo, J A; Boggess, T; Uhlar, C; Wang, X; Khan, H; Cappos, G; Joly-Amado, A; De Narvaez, E; Majid, S; Minamide, L S; Bamburg, J R; Morgan, D; Weeber, E; Kang, D E

2015-03-05

Molecular pathways underlying the neurotoxicity and production of amyloid β protein (Aβ) represent potentially promising therapeutic targets for Alzheimer's disease (AD). We recently found that overexpression of the scaffolding protein RanBP9 increases Aβ production in cell lines and in transgenic mice while promoting cofilin activation and mitochondrial dysfunction. Translocation of cofilin to mitochondria and induction of cofilin-actin pathology require the activation/dephosphorylation of cofilin by Slingshot homolog 1 (SSH1) and cysteine oxidation of cofilin. In this study, we found that endogenous RanBP9 positively regulates SSH1 levels and mediates Aβ-induced translocation of cofilin to mitochondria and induction of cofilin-actin pathology in cultured cells, primary neurons, and in vivo. Endogenous level of RanBP9 was also required for Aβ-induced collapse of growth cones in immature neurons (days in vitro 9 (DIV9)) and depletion of synaptic proteins in mature neurons (DIV21). In vivo, amyloid precursor protein (APP)/presenilin-1 (PS1) mice exhibited 3.5-fold increased RanBP9 levels, and RanBP9 reduction protected against cofilin-actin pathology, synaptic damage, gliosis, and Aβ accumulation associated with APP/PS1 mice. Brains slices derived from APP/PS1 mice showed significantly impaired long-term potentiation (LTP), and RanBP9 reduction significantly enhanced paired pulse facilitation and LTP, as well as partially rescued contextual memory deficits associated with APP/PS1 mice. Therefore, these results underscore the critical importance of endogenous RanBP9 not only in Aβ accumulation but also in mediating the neurotoxic actions of Aβ at the level of synaptic plasticity, mitochondria, and cofilin-actin pathology via control of the SSH1-cofilin pathway in vivo.

Identification of transcripts involved in meiosis and follicle formation during ovine ovary development.

PubMed

Baillet, Adrienne; Mandon-Pépin, Béatrice; Cabau, Cédric; Poumerol, Elodie; Pailhoux, Eric; Cotinot, Corinne

2008-09-23

The key steps in germ cell survival during ovarian development are the entry into meiosis of oogonies and the formation of primordial follicles, which then determine the reproductive lifespan of the ovary. In sheep, these steps occur during fetal life, between 55 and 80 days of gestation, respectively. The aim of this study was to identify differentially expressed ovarian genes during prophase I meiosis and early folliculogenesis in sheep. In order to elucidate the molecular events associated with early ovarian differentiation, we generated two ovary stage-specific subtracted cDNA libraries using SSH. Large-scale sequencing of these SSH libraries identified 6,080 ESTs representing 2,535 contigs. Clustering and assembly of these ESTs resulted in a total of 2,101 unique sequences depicted in 1,305 singleton (62.11%) and 796 contigs (37.9%) ESTs (clusters). BLASTX evaluation indicated that 99% of the ESTs were homologous to various known genes/proteins in a broad range of organisms, especially ovine, bovine and human species. The remaining 1% which exhibited any homology to known gene sequences was considered as novel. Detailed study of the expression patterns of some of these genes using RT-PCR revealed new promising candidates for ovary differentiation genes in sheep. We showed that the SSH approach was relevant to determining new mammalian genes which might be involved in oogenesis and early follicle development, and enabled the discovery of new potential oocyte and granulosa cell markers for future studies. These genes may have significant implications regarding our understanding of ovarian function in molecular terms, and for the development of innovative strategies to both promote and control fertility.

Altered regulation of renal sodium transporters in salt-sensitive hypertensive rats induced by uninephrectomy.

PubMed

Jung, Ji Yong; Lee, Jay Wook; Kim, Sejoong; Jung, Eun Sook; Jang, Hye Ryoun; Han, Jin Suk; Joo, Kwon Wook

2009-12-01

Uninephrectomy (uNx) in young rats causes salt-sensitive hypertension (SSH). Alterations of sodium handling in residual nephrons may play a role in the pathogenesis. Therefore, we evaluated the adaptive alterations of renal sodium transporters according to salt intake in uNx-SSH rats. uNx or sham operations were performed in male Sprague-Dawley rats, and normal-salt diet was fed for 4 weeks. Four experimental groups were used: sham-operated rats raised on a high-salt diet for 2 weeks (CHH) or on a low-salt diet for 1 week after 1 week's high-salt diet (CHL) and uNx rats fed on the same diet (NHH, NHL) as the sham-operated rats were fed. Expression of major renal sodium transporters were determined by semiquantitative immunoblotting. Systolic blood pressure was increased in NHH and NHL groups, compared with CHH and CHL, respectively. Protein abundances of Na(+)/K(+)/2Cl(-) cotransporter (NKCC2) and Na(+)/Cl(-) cotransporter (NCC) in the CHH group were lower than the CHL group. Expression of epithelial sodium channel (ENaC)-γ increased in the CHH group. In contrast, expressions of NKCC2 and NCC in the NHH group didn't show any significant alterations, compared to the NHL group. Expressions of ENaC-α and ENaC-β in the NHH group were higher than the CHH group. Adaptive alterations of NKCC2 and NCC to changes of salt intake were different in the uNx group, and changes in ENaC-α and ENaC-β were also different. These altered regulations of sodium transporters may be involved in the pathogenesis of SSH in the uNx rat model.

Multitemporal field-based plant height estimation using 3D point clouds generated from small unmanned aerial systems high-resolution imagery

NASA Astrophysics Data System (ADS)

Malambo, L.; Popescu, S. C.; Murray, S. C.; Putman, E.; Pugh, N. A.; Horne, D. W.; Richardson, G.; Sheridan, R.; Rooney, W. L.; Avant, R.; Vidrine, M.; McCutchen, B.; Baltensperger, D.; Bishop, M.

2018-02-01

Plant breeders and agronomists are increasingly interested in repeated plant height measurements over large experimental fields to study critical aspects of plant physiology, genetics and environmental conditions during plant growth. However, collecting such measurements using commonly used manual field measurements is inefficient. 3D point clouds generated from unmanned aerial systems (UAS) images using Structure from Motion (SfM) techniques offer a new option for efficiently deriving in-field crop height data. This study evaluated UAS/SfM for multitemporal 3D crop modelling and developed and assessed a methodology for estimating plant height data from point clouds generated using SfM. High-resolution images in visible spectrum were collected weekly across 12 dates from April (planting) to July (harvest) 2016 over 288 maize (Zea mays L.) and 460 sorghum (Sorghum bicolor L.) plots using a DJI Phantom 3 Professional UAS. The study compared SfM point clouds with terrestrial lidar (TLS) at two dates to evaluate the ability of SfM point clouds to accurately capture ground surfaces and crop canopies, both of which are critical for plant height estimation. Extended plant height comparisons were carried out between SfM plant height (the 90th, 95th, 99th percentiles and maximum height) per plot and field plant height measurements at six dates throughout the growing season to test the repeatability and consistency of SfM estimates. High correlations were observed between SfM and TLS data (R2 = 0.88-0.97, RMSE = 0.01-0.02 m and R2 = 0.60-0.77 RMSE = 0.12-0.16 m for the ground surface and canopy comparison, respectively). Extended height comparisons also showed strong correlations (R2 = 0.42-0.91, RMSE = 0.11-0.19 m for maize and R2 = 0.61-0.85, RMSE = 0.12-0.24 m for sorghum). In general, the 90th, 95th and 99th percentile height metrics had higher correlations to field measurements than the maximum metric though differences among them were not statistically significant. The accuracy of SfM plant height estimates fluctuated over the growing period, likely impacted by the changing reflectance regime due to plant development. Overall, these results show a potential path to reducing laborious manual height measurement and enhancing plant research programs through UAS and SfM.

ON THE ROLE OF THE BACKGROUND OVERLYING MAGNETIC FIELD IN SOLAR ERUPTIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nindos, A.; Patsourakos, S.; Wiegelmann, T., E-mail: anindos@cc.uoi.gr

2012-03-20

The primary constraining force that inhibits global solar eruptions is provided by the overlying background magnetic field. Using magnetic field data from both the Helioseismic and Magnetic Imager aboard the Solar Dynamics Observatory and the spectropolarimeter of the Solar Optical Telescope aboard Hinode, we study the long-term evolution of the background field in active region AR11158 that produced three major coronal mass ejections (CMEs). The CME formation heights were determined using EUV data. We calculated the decay index -(z/B)({partial_derivative}B/{partial_derivative}z) of the magnetic field B (i.e., how fast the field decreases with height, z) related to each event from the timemore » of the active region emergence until well after the CMEs. At the heights of CME formation, the decay indices were 1.1-2.1. Prior to two of the events, there were extended periods (of more than 23 hr) where the related decay indices at heights above the CME formation heights either decreased (up to -15%) or exhibited small changes. The decay index related to the third event increased (up to 118%) at heights above 20 Mm within an interval that started 64 hr prior to the CME. The magnetic free energy and the accumulated helicity into the corona contributed the most to the eruptions by their increase throughout the flux emergence phase (by factors of more than five and more than two orders of magnitude, respectively). Our results indicate that the initiation of eruptions does not depend critically on the temporal evolution of the variation of the background field with height.« less

External electric field effects on Schottky barrier at Gd3N@C80/Au interface

NASA Astrophysics Data System (ADS)

Onishi, Koichi; Nakashima, Fumihiro; Jin, Ge; Eto, Daichi; Hattori, Hayami; Miyoshi, Noriko; Kirimoto, Kenta; Sun, Yong

2017-08-01

The effects of the external electric field on the height of the Schottky barrier at the Gd3N@C80/Au interface were studied by measuring current-voltage characteristics at various temperatures from 200 K to 450 K. The Gd3N@C80 sample with the conduction/forbidden/valence energy band structure had a face-centered cubic crystal structure with the average grain size of several nanometers. The height of the Gd3N@C80/Au Schottky barrier was confirmed to be 400 meV at a low electric field at room temperature. Moreover, the height decreases with the increasing external electric field through a change of permittivity in the Gd3N@C80 sample due to a polarization of the [Gd3] 9 +-[N3 -+("separators="|C80 ) 6 -] dipoles in the Gd3N@C80 molecule. The field-dependence of the barrier height can be described using a power math function of the electric field strength. The results of the field-dependent barrier height indicate that the reduction in the Schottky barrier is due to an image force effect of the transport charge carrier at the Gd3N@C80/Au interface.

Combined Studies

DTIC Science & Technology

1976-08-31

SSH, (1-1) where H viands for conjugate transpose, and S is the total signal vector recorded at an array of sensors, defined by: S...time delay, and a = a scale constant (for convenience, yet without loss of gen- erality, les us assume (|a(<l) ), The complex cepstrum x(n

XENOBIOTIC INDUCED ORGAN-SPECIFIC GENE EXPRESSION AND MACRO/MICROARRAY DEVELOPMENT IN MEDAKA (ORYZIAS LATIPES)

EPA Science Inventory

As part of an ongoing effort to understand and address the short and long-term consequences of increasing levels of environmental contaminants, we used suppressive subtractive hydridization (SSH) to develop gene expression profiles from Japanese medaka (Oryzias latipes) exposed ...

Suppression subtractive hybridization as a tool to identify anthocyanin metabolism-related genes in apple skin.

PubMed

Ban, Yusuke; Moriguchi, Takaya

2010-01-01

The pigmentation of anthocyanins is one of the important determinants for consumer preference and marketability in horticultural crops such as fruits and flowers. To elucidate the mechanisms underlying the physiological process leading to the pigmentation of anthocyanins, identification of the genes differentially expressed in response to anthocyanin accumulation is a useful strategy. Currently, microarrays have been widely used to isolate differentially expressed genes. However, the use of microarrays is limited by its high cost of special apparatus and materials. Therefore, availability of microarrays is limited and does not come into common use at present. Suppression subtractive hybridization (SSH) is an alternative tool that has been widely used to identify differentially expressed genes due to its easy handling and relatively low cost. This chapter describes the procedures for SSH, including RNA extraction from polysaccharides and polyphenol-rich samples, poly(A)+ RNA purification, evaluation of subtraction efficiency, and differential screening using reverse northern in apple skin.

Thrombospondin Type-1 Repeat Domain-Containing Proteins Are Strongly Expressed in the Head Region of Hydra

PubMed Central

Hamaguchi-Hamada, Kayoko; Kurumata-Shigeto, Mami; Minobe, Sumiko; Fukuoka, Nozomi; Sato, Manami; Matsufuji, Miyuki; Koizumi, Osamu; Hamada, Shun

2016-01-01

The head region of Hydra, the hypostome, is a key body part for developmental control and the nervous system. We herein examined genes specifically expressed in the head region of Hydra oligactis using suppression subtractive hybridization (SSH) cloning. A total of 1414 subtracted clones were sequenced and found to be derived from at least 540 different genes by BLASTN analyses. Approximately 25% of the subtracted clones had sequences encoding thrombospondin type-1 repeat (TSR) domains, and were derived from 17 genes. We identified 11 TSR domain-containing genes among the top 36 genes that were the most frequently detected in our SSH library. Whole-mount in situ hybridization analyses confirmed that at least 13 out of 17 TSR domain-containing genes were expressed in the hypostome of Hydra oligactis. The prominent expression of TSR domain-containing genes suggests that these genes play significant roles in the hypostome of Hydra oligactis. PMID:27043211

[Construction of fetal mesenchymal stem cell cDNA subtractive library].

PubMed

Yang, Li; Wang, Dong-Mei; Li, Liang; Bai, Ci-Xian; Cao, Hua; Li, Ting-Yu; Pei, Xue-Tao

2002-04-01

To identify differentially expressed genes between fetal mesenchymal stem cell (MSC) and adult MSC, especially specified genes expressed in fetal MSC, a cDNA subtractive library of fetal MSC was constructed using suppression subtractive hybridization (SSH) technique. At first, total RNA was isolated from fetal and adult MSC. Using SMART PCR synthesis method, single-strand and double-strand cDNAs were synthesized. After Rsa I digestion, fetal MSC cDNAs were divided into two groups and ligated to adaptor 1 and adaptor 2 respectively. Results showed that the amplified library contains 890 clones. Analysis of 890 clones with PCR demonstrated that 768 clones were positive. The positive rate is 86.3%. The size of inserted fragments in these positive clones was between 0.2 - 1 kb, with an average of 400 - 600 bp. SSH is a convenient and effective method for screening differentially expressed genes. The constructed cDNA subtractive library of fetal MSC cDNA lays solid foundation for screening and cloning new and specific function related genes of fetal MSC.

Deriving Temporal Height Information for Maize Breeding

NASA Astrophysics Data System (ADS)

Malambo, L.; Popescu, S. C.; Murray, S.; Sheridan, R.; Richardson, G.; Putman, E.

2016-12-01

Phenotypic data such as height provide useful information to crop breeders to better understand their field experiments and associated field variability. However, the measurement of crop height in many breeding programs is done manually which demands significant effort and time and does not scale well when large field experiments are involved. Through structure from motion (SfM) techniques, small unmanned aerial vehicles (sUAV) or drones offer tremendous potential for generating crop height data and other morphological data such as canopy area and biomass in cost-effective and efficient way. We present results of an on-going UAV application project aimed at generating temporal height metrics for maize breeding at the Texas A&M AgriLife Research farm in Burleson County, Texas. We outline the activities involved from the drone aerial surveys, image processing and generation of crop height metrics. The experimental period ran from April (planting) through August (harvest) 2016 and involved 36 maize hybrids replicated over 288 plots ( 1.7 Ha). During the time, crop heights were manually measured per plot at weekly intervals. Corresponding aerial flights were carried out using a DJI Phantom 3 Professional UAV at each interval and images captured processed into point clouds and image mosaics using Pix4D (Pix4D SA; Lausanne, Switzerland) software. LiDAR data was also captured at two intervals (05/06 and 07/29) to provide another source of height information. To obtain height data per plot from SfM point clouds and LiDAR data, percentile height metrics were then generated using FUSION software. Results of the comparison between SfM and field measurement height show high correlation (R2 > 0.7), showing that use of sUAV can replace laborious manual height measurement and enhance plant breeding programs. Similar results were also obtained from the comparison of SfM and LiDAR heights. Outputs of this project are helping plant breeders at Texas A&M automate routine height measurements in maize and quickly make actionable decisions and discover new hybrids.

The Aging of the U.S. Population: Human Resource Implications.

ERIC Educational Resources Information Center

Morrison, Malcolm H.

1983-01-01

This article argues that in the upcoming decades, older workers will be competing against the largest cohort of middle-aged workers in our country's history. In the absence of other options, the elderly may feel increased pressure to retire or work part time. (Author/SSH)

E-Control: First Public Release of Remote Control Software for VLBI Telescopes

NASA Technical Reports Server (NTRS)

Neidhardt, Alexander; Ettl, Martin; Rottmann, Helge; Ploetz, Christian; Muehlbauer, Matthias; Hase, Hayo; Alef, Walter; Sobarzo, Sergio; Herrera, Cristian; Himwich, Ed

2010-01-01

Automating and remotely controlling observations are important for future operations in a Global Geodetic Observing System (GGOS). At the Geodetic Observatory Wettzell, in cooperation with the Max-Planck-Institute for Radio Astronomy in Bonn, a software extension to the existing NASA Field System has been developed for remote control. It uses the principle of a remotely accessible, autonomous process cell as a server extension for the Field System. The communication is realized for low transfer rates using Remote Procedure Calls (RPC). It uses generative programming with the interface software generator idl2rpc.pl developed at Wettzell. The user interacts with this system over a modern graphical user interface created with wxWidgets. For security reasons the communication is automatically tunneled through a Secure Shell (SSH) session to the telescope. There are already successful test observations with the telescopes at O Higgins, Concepcion, and Wettzell. At Wettzell the software is already used routinely for weekend observations. Therefore the first public release of the software is now available, which will also be useful for other telescopes.

Results on SSH neural network forecasting in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Rixen, Michel; Beckers, Jean-Marie; Alvarez, Alberto; Tintore, Joaquim

2002-01-01

Nowadays, satellites are the only monitoring systems that cover almost continuously all possible ocean areas and are now an essential part of operational oceanography. A novel approach based on artificial intelligence (AI) concepts, exploits pasts time series of satellite images to infer near future ocean conditions at the surface by neural networks and genetic algorithms. The size of the AI problem is drastically reduced by splitting the spatio-temporal variability contained in the remote sensing data by using empirical orthogonal function (EOF) decomposition. The problem of forecasting the dynamics of a 2D surface field can thus be reduced by selecting the most relevant empirical modes, and non-linear time series predictors are then applied on the amplitudes only. In the present case study, we use altimetric maps of the Mediterranean Sea, combining TOPEX-POSEIDON and ERS-1/2 data for the period 1992 to 1997. The learning procedure is applied to each mode individually. The final forecast is then reconstructed form the EOFs and the forecasted amplitudes and compared to the real observed field for validation of the method.

The effect of interface hopping on inelastic scattering of oppositely charged polarons in polymers

NASA Astrophysics Data System (ADS)

Di, Bing; Wang, Ya-Dong; Zhang, Ya-Lin; An, Zhong

2013-06-01

The inelastic scattering of oppositely charge polarons in polymer heterojunctions is believed to be of fundamental importance for the light-emitting and transport properties of conjugated polymers. Based on the tight-binding SSH model, and by using a nonadiabatic molecular dynamic method, we investigate the effects of interface hopping on inelastic scattering of oppositely charged polarons in a polymer heterojunction. It is found that the scattering processes of the charge and lattice defect depend sensitively on the hopping integrals at the polymer/polymer interface when the interface potential barrier and applied electric field strength are constant. In particular, at an intermediate electric field, when the interface hopping integral of the polymer/polymer heterojunction material is increased beyond a critical value, two polarons can combine to become a lattice deformation in one of the two polymer chains, with the electron and the hole bound together, i.e., a self-trapped polaron—exciton. The yield of excitons then increases to a peak value. These results show that interface hopping is of fundamental importance and facilitates the formation of polaron—excitons.

Inner Plasma Structure of the Low-Latitude Reconnection Layer

NASA Technical Reports Server (NTRS)

Zhang, Q.-H.; Dunlop, M. W.; Lockwood, M.; Lavraud, B.; Bogdanova, Y. V.; Hasegawa, H.; Yang, H. -G.; Liu, R. -Y.; Hu, H. -Q.; Zhang, B. -C.;

The Correlation of Learning Styles with Student Performance In Academic and Clinical Course Work.

ERIC Educational Resources Information Center

Cunningham, M. Jo; Trickey, Becki A.

1983-01-01

The purpose of this study was to determine any correlation between learning styles and performance in the academic and clinical course work of occupational therapy students at the Medical University of South Carolina. (Availability: RAM Associates LTD., P.O. Box N, Laurel, MD 20707) (SSH)

Testing the Shallow Structure Hypothesis in L2 Japanese

ERIC Educational Resources Information Center

Smith, Megan

2016-01-01

Language processing heuristics are one of the possible sources of divergence between first and second language systems. The Shallow Structure Hypothesis (SSH) (Clahsen and Felser, 2006) proposes that non-native language processing relies primarily on semantic, and not syntactic, information, and that second language (L2) processing is therefore…

Application of Competency Testing Mandates to Handicapped Children.

ERIC Educational Resources Information Center

McCarthy, Martha M.

1983-01-01

The author considers the legality of minimum competency testing diploma requirements applied to the handicapped in light of (1) their constitutional and statutory rights to nondiscriminatory treatment, (2) their statutory right to an appropriate education, and (3) their constitutional right to substantive and procedural due process. (Author/SSH)

Current Developments in DETER Cybersecurity Testbed Technology

DTIC Science & Technology

2015-12-08

management on PlanetLab [12], such as Plush and Nebula [4], PlMan [19], Stork [20], pShell [21], Planetlab Application Manager [22], parallel open...SSH tools [23], plDist [24], Nixes [25], PLDeploy [26] and vxargs [27]. With the exception of Plush and Nebula , these tools are all low-level

Operations Management and Curriculum Design.

ERIC Educational Resources Information Center

Slack, Nigel

1983-01-01

The last few years have seen developments in the academic treatment of operations management which both broaden the subject to include a much wider range of industries in the nonmanufacturing sectors and place the operations function in a more strategic context. (MEAD Subscriptions, CSML, University of Lancaster, Lancaster LA1 4YX, England) (SSH)

Identifying differentially expressed genes in leaves of Glycine tomentella in the presence of the fungal pathogen Phakopsora pachyrhizi

USDA-ARS?s Scientific Manuscript database

Transcription profiles of Glycine tomentella genotypes having different responses to soybean rust, caused by the fungal pathogen Phakopsora pachyrhizi, were compared using suppression subtractive hybridization (SSH). Four cDNA libraries were constructed from infected and non-infected leaves of resis...

Productivity Increased in 1981 in Most Industries Measured.

ERIC Educational Resources Information Center

Herman, Arthur S.

1982-01-01

Although productivity growth slowed during 1976-81 for most of the industries surveyed, a majority of significant industries showed advances in output per employee hour in 1981. The growth in industry productivity was consistent with the gain in the nonfarm business sector of the economy, which grew 1.4 percent. (SSH)

Ethical Problems in the Practice of Organization Development.

ERIC Educational Resources Information Center

Wooten, Kevin C.; White, Louis P.

1983-01-01

This article discusses forces that affect the professional ethics of organizational development (OD). Both driving forces and restraining forces have influenced the current status of OD ethics. These forces have operated since the emergence of OD itself, and their fluctuating intensity results in the dynamic nature of the OD profession. (SSH)

Education and Training: Have the Japanese Beaten Us Again?

ERIC Educational Resources Information Center

Rehder, Robert R.

1983-01-01

Japan is often likened to a giant corporation--Japan Inc.--in which the educational credentials of its employees largely determine their social and economic status. This first international report of 1983 discusses why the U.S. should study the pros and cons of the Japanese educational system. (SSH)

Time-Series Evidence of the Effect of the Minimum Wage on Youth Employment and Unemployment.

ERIC Educational Resources Information Center

Brown, Charles; And Others

1983-01-01

The study finds that a 10 percent increase in the federal minimum wage (or the coverage rate) would reduce teenage (16-19) employment by about one percent, which is at the lower end of the range of estimates from previous studies. (Author/SSH)

Occupational Safety and Health Systems: A Three-Country Comparison.

ERIC Educational Resources Information Center

Singleton, W. T.

1983-01-01

This article compares the occupational safety and health systems of Switzerland, the United Kingdom, and the United States, looking at the origins of their legislation and its effects on occupational safety and health, with a view to determining what lessons may emerge, particularly for developing countries. (Author/SSH)

Time dependent genetic analysis links field and controlled environment phenotypes in the model C 4 grass Setaria

DOE PAGES

Feldman, Max J.; Paul, Rachel E.; Banan, Darshi; ...

2017-06-23

Vertical growth of plants is a dynamic process that is influenced by genetic and environmental factors and has a pronounced effect on overall plant architecture and biomass composition. For this research, we have performed six controlled growth trials of an interspecific Setaria italica x Setaria viridis recombinant inbred line population to assess how the genetic architecture of plant height is influenced by developmental queues, water availability and planting density. The non-destructive nature of plant height measurements has enabled us to monitor height throughout the plant life cycle in both field and controlled environments. We find that plant height is reducedmore » under water limitation and high density planting and affected by growth environment (field vs. growth chamber). The results support a model where plant height is a heritable, polygenic trait and that the major genetic loci that influence plant height function independent of growth environment. The identity and contribution of loci that influence height changes dynamically throughout development and the reduction of growth observed in water limited environments is a consequence of delayed progression through the genetic program which establishes plant height in Setaria. In this population, alleles inherited from the weedy S. viridis parent act to increase plant height early, whereas a larger number of small effect alleles inherited from the domesticated S. italica parent collectively act to increase plant height later in development.« less

Time dependent genetic analysis links field and controlled environment phenotypes in the model C 4 grass Setaria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feldman, Max J.; Paul, Rachel E.; Banan, Darshi

Vertical growth of plants is a dynamic process that is influenced by genetic and environmental factors and has a pronounced effect on overall plant architecture and biomass composition. For this research, we have performed six controlled growth trials of an interspecific Setaria italica x Setaria viridis recombinant inbred line population to assess how the genetic architecture of plant height is influenced by developmental queues, water availability and planting density. The non-destructive nature of plant height measurements has enabled us to monitor height throughout the plant life cycle in both field and controlled environments. We find that plant height is reducedmore » under water limitation and high density planting and affected by growth environment (field vs. growth chamber). The results support a model where plant height is a heritable, polygenic trait and that the major genetic loci that influence plant height function independent of growth environment. The identity and contribution of loci that influence height changes dynamically throughout development and the reduction of growth observed in water limited environments is a consequence of delayed progression through the genetic program which establishes plant height in Setaria. In this population, alleles inherited from the weedy S. viridis parent act to increase plant height early, whereas a larger number of small effect alleles inherited from the domesticated S. italica parent collectively act to increase plant height later in development.« less

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria

PubMed Central

Paul, Rachel E.; Sebastian, Jose; Yee, Muh-Ching; Jiang, Hui; Lipka, Alexander E.; Brutnell, Thomas P.; Dinneny, José R.; Leakey, Andrew D. B.

2017-01-01

Vertical growth of plants is a dynamic process that is influenced by genetic and environmental factors and has a pronounced effect on overall plant architecture and biomass composition. We have performed six controlled growth trials of an interspecific Setaria italica x Setaria viridis recombinant inbred line population to assess how the genetic architecture of plant height is influenced by developmental queues, water availability and planting density. The non-destructive nature of plant height measurements has enabled us to monitor height throughout the plant life cycle in both field and controlled environments. We find that plant height is reduced under water limitation and high density planting and affected by growth environment (field vs. growth chamber). The results support a model where plant height is a heritable, polygenic trait and that the major genetic loci that influence plant height function independent of growth environment. The identity and contribution of loci that influence height changes dynamically throughout development and the reduction of growth observed in water limited environments is a consequence of delayed progression through the genetic program which establishes plant height in Setaria. In this population, alleles inherited from the weedy S. viridis parent act to increase plant height early, whereas a larger number of small effect alleles inherited from the domesticated S. italica parent collectively act to increase plant height later in development. PMID:28644860

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.

PubMed

Feldman, Max J; Paul, Rachel E; Banan, Darshi; Barrett, Jennifer F; Sebastian, Jose; Yee, Muh-Ching; Jiang, Hui; Lipka, Alexander E; Brutnell, Thomas P; Dinneny, José R; Leakey, Andrew D B; Baxter, Ivan

2017-06-01

Vertical growth of plants is a dynamic process that is influenced by genetic and environmental factors and has a pronounced effect on overall plant architecture and biomass composition. We have performed six controlled growth trials of an interspecific Setaria italica x Setaria viridis recombinant inbred line population to assess how the genetic architecture of plant height is influenced by developmental queues, water availability and planting density. The non-destructive nature of plant height measurements has enabled us to monitor height throughout the plant life cycle in both field and controlled environments. We find that plant height is reduced under water limitation and high density planting and affected by growth environment (field vs. growth chamber). The results support a model where plant height is a heritable, polygenic trait and that the major genetic loci that influence plant height function independent of growth environment. The identity and contribution of loci that influence height changes dynamically throughout development and the reduction of growth observed in water limited environments is a consequence of delayed progression through the genetic program which establishes plant height in Setaria. In this population, alleles inherited from the weedy S. viridis parent act to increase plant height early, whereas a larger number of small effect alleles inherited from the domesticated S. italica parent collectively act to increase plant height later in development.

Comparisons of modeled height predictions to ocular height estimates

Treesearch

W.A. Bechtold; S.J. Zarnoch; W.G. Burkman

1998-01-01

Equations used by USDA Forest Service Forest Inventory and Analysis projects to predict individual tree heights on the basis of species and d.b.h. were improved by the addition of mean overstory height. However, ocular estimates of total height by field crews were more accurate than the statistically improved models, especially for hardwood species. Height predictions...

Global height datum unification: a new approach in gravity potential space

NASA Astrophysics Data System (ADS)

Ardalan, A. A.; Safari, A.

2005-12-01

The problem of “global height datum unification” is solved in the gravity potential space based on: (1) high-resolution local gravity field modeling, (2) geocentric coordinates of the reference benchmark, and (3) a known value of the geoid’s potential. The high-resolution local gravity field model is derived based on a solution of the fixed-free two-boundary-value problem of the Earth’s gravity field using (a) potential difference values (from precise leveling), (b) modulus of the gravity vector (from gravimetry), (c) astronomical longitude and latitude (from geodetic astronomy and/or combination of (GNSS) Global Navigation Satellite System observations with total station measurements), (d) and satellite altimetry. Knowing the height of the reference benchmark in the national height system and its geocentric GNSS coordinates, and using the derived high-resolution local gravity field model, the gravity potential value of the zero point of the height system is computed. The difference between the derived gravity potential value of the zero point of the height system and the geoid’s potential value is computed. This potential difference gives the offset of the zero point of the height system from geoid in the “potential space”, which is transferred into “geometry space” using the transformation formula derived in this paper. The method was applied to the computation of the offset of the zero point of the Iranian height datum from the geoid’s potential value W 0=62636855.8 m2/s2. According to the geometry space computations, the height datum of Iran is 0.09 m below the geoid.

Identification of low Ca(2+) stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL).

PubMed

Chen, Hua; Zhang, Chong; Cai, Tie Cheng; Deng, Ye; Zhou, Shuangbiao; Zheng, Yixiong; Ma, Shiwei; Tang, Ronghua; Varshney, Rajeev K; Zhuang, Weijian

2016-02-01

Calcium is a universal signal in the regulation of wide aspects in biology, but few are known about the function of calcium in the control of early embryo development. Ca(2+) deficiency in soil induces early embryo abortion in peanut, producing empty pods, which is a general problem; however, the underlying mechanism remains unclear. In this study, embryo abortion was characterized to be caused by apoptosis marked with cell wall degradation. Using a method of SSH cDNA libraries associated with library lift (SSHaLL), 62 differentially expressed genes were isolated from young peanut embryos. These genes were classified to be stress responses, catabolic process, carbohydrate and lipid metabolism, embryo morphogenesis, regulation, etc. The cell retardation with cell wall degradation was caused by up-regulated cell wall hydrolases and down-regulated cellular synthases genes. HsfA4a, which was characterized to be important to embryo development, was significantly down-regulated under Ca(2+) -deficient conditions from 15 days after pegging (DAP) to 30 DAP. Two AhCYP707A4 genes, encoding abscisic acid (ABA) 8'-hydroxylases, key enzymes for ABA catabolism, were up-regulated by 21-fold under Ca(2+) -deficient conditions upstream of HsfA4a, reducing the ABA level in early embryos. Over-expression of AhCYP707A4 in Nicotiana benthamiana showed a phenotype of low ABA content with high numbers of aborted embryos, small pods and less seeds, which confirms that AhCYP707A4 is a key player in regulation of Ca(2+) deficiency-induced embryo abortion via ABA-mediated apoptosis. The results elucidated the mechanism of low Ca(2+) -induced embryo abortion and described the method for other fields of study. © 2015 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Early Student Support for SST Control by Subsurface Mixing during Indian Ocean Monsoons

DTIC Science & Technology

2015-09-30

Lee and Rainville), and NRL (Wijesekera). OBJECTIVES The objectives of this project are to: 1. use satellite-measured SSS , SST, and SSH to...forcing, and 5. synthesize the above information and products to examine links and feedbacks between the SST and SSS of the SLD and local precipitation

Adult Education in the People's Republic of China.

ERIC Educational Resources Information Center

Sidel, Mark

1982-01-01

This report was based on the author's study in China in 1980-81 and on the findings of other observers, Chinese data, and analyses of the post-Mao adult education system (1977-1982). It focuses particularly on the shifts in adult education priorities and programs and on the political and pedagogical debates. (SSH)

International Trends in Productivity and Labor Costs.

ERIC Educational Resources Information Center

Capdevielle, Patricia; And Others

1982-01-01

Productivity increased in 1981 in the United States, Japan, and European countries studied. Gains ranged from 2 to 4 percent in the US, Japan, France, Germany, Italy, and the Netherlands, to 6 percent in England and Denmark, and more than 7 percent in Belgium. In Canada and Sweden, productivity remained essentially unchanged. (SSH)

The Robots Are Coming! Training Tomorrow's High-Tech Workers.

ERIC Educational Resources Information Center

Zemke, Ron

1983-01-01

The United States, running second to Japan in the robot race, is employing 19 percent of the world's robots. This article presents six classes of robots that were defined by the Japanese trade association. All are multifunctional, equipped with a memory device, capable of rotation, and able to replace human workers. (SSH)

Non-local electron transport through normal and topological ladder-like atomic systems

NASA Astrophysics Data System (ADS)

Kurzyna, Marcin; Kwapiński, Tomasz

2018-05-01

We propose a locally protected ladder-like atomic system (nanoconductor) on a substrate that is insensitive to external perturbations. The system corresponds to coupled atomic chains fabricated on different surfaces. Electron transport properties of such conductors are studied theoretically using the model tight-binding Su-Schriffer-Hegger (SSH) Hamiltonian and Green's function formalism. We have found that the conductance of the system is almost insensitive to single adatoms and oscillates as a function of the side chain length with very large periods. Non-local character of the electron transport was observed also for topological SSH chains where nontrivial end states survive in the presence of disturbances as well as for different substrates. We have found that the careful inspection of the density of states or charge waves can provide the information about the atom energy levels and hopping amplitudes. Moreover, the ladder-like geometry allows one to distinguish between normal and topological zero-energy states. It is important that topological chains do not reveal Friedel oscillations which are observed in non-topological chains.

Regulating ehrlich and demethiolation pathways for alcohols production by the expression of ubiquitin-protein ligase gene HUWE1.

PubMed

Zhang, Quan; Jia, Kai-Zhi; Xia, Shi-Tao; Xu, Yang-Hua; Liu, Rui-Sang; Li, Hong-Mei; Tang, Ya-Jie

2016-02-10

Ehrlich and demethiolation pathways as two competing branches converted amino acid into alcohols. Controlling both pathways offers considerable potential for industrial applications including alcohols overproduction, flavor-quality control and developing new flavors. While how to regulate ehrlich and demethiolation pathways is still not applicable. Taking the conversion of methionine into methionol and methanethiol for example, we constructed two suppression subtractive cDNA libraries of Clonostachys rosea by using suppression subtractive hybridization (SSH) technology for screening regulators controlling the conversion. E3 ubiquitin-protein ligase gene HUWE1 screened from forward SSH library was validated to be related with the biosynthesis of end products. Overexpressing HUWE1 in C. rosea and S. cerevisiae significantly increased the biosynthesis of methanethiol and its derivatives in demethiolation pathway, while suppressed the biosynthesis of methional and methionol in ehrlich pathway. These results attained the directional regulation of both pathways by overexpressing HUWE1. Thus, HUWE1 has potential to be a key target for controlling and enhancing alcohols production by metabolic engineering.

An SSH library responsive to azadirachtin A constructed in Spodoptera litura Fabricius cell lines.

PubMed

Yan, Chao; Zhang, Zhi-Xiang; Xu, Han-Hong

2012-05-31

The present study revealed differentially expressed genes responsive to azadirachtin A (Aza) in Spodoptera litura cell line through suppression subtractive hybridization. In the Aza-responsive SSH library, approximately 270 sequences represent 53 different identified genes encoding proteins with various predicted functions, and the percentages of the gene clusters were 26.09% (genetic information processing), 11.41% (cell growth and death), 7.07% (metabolism), 6.52% (signal transduction/transport) and 2.72% (immunity), respectively. Eleven clones homologous to identified genes were selected to be confirmed through quantitative real time polymerase chain reaction. Among the eleven clones validated, all but one transcript of lipase showed an increase in SL cell line collected from ETA, whereas the transcripts of other genes were lower in the SL cell line collected from ETA compared with that of UETA. These genes were considered to be related to the response of SL cell line to Aza. These will provide a new clue to uncover the molecular mechanisms of Aza acting on SL cell line. Copyright © 2012 Elsevier B.V. All rights reserved.

Access and accounting schemes of wireless broadband

NASA Astrophysics Data System (ADS)

Zhang, Jian; Huang, Benxiong; Wang, Yan; Yu, Xing

2004-04-01

In this paper, two wireless broadband access and accounting schemes were introduced. There are some differences in the client and the access router module between them. In one scheme, Secure Shell (SSH) protocol is used in the access system. The SSH server makes the authentication based on private key cryptography. The advantage of this scheme is the security of the user's information, and we have sophisticated access control. In the other scheme, Secure Sockets Layer (SSL) protocol is used the access system. It uses the technology of public privacy key. Nowadays, web browser generally combines HTTP and SSL protocol and we use the SSL protocol to implement the encryption of the data between the clients and the access route. The schemes are same in the radius sever part. Remote Authentication Dial in User Service (RADIUS), as a security protocol in the form of Client/Sever, is becoming an authentication/accounting protocol for standard access to the Internet. It will be explained in a flow chart. In our scheme, the access router serves as the client to the radius server.

SSH2S: Hydrogen storage in complex hydrides for an auxiliary power unit based on high temperature proton exchange membrane fuel cells

NASA Astrophysics Data System (ADS)

Baricco, Marcello; Bang, Mads; Fichtner, Maximilian; Hauback, Bjorn; Linder, Marc; Luetto, Carlo; Moretto, Pietro; Sgroi, Mauro

2017-02-01

The main objective of the SSH2S (Fuel Cell Coupled Solid State Hydrogen Storage Tank) project was to develop a solid state hydrogen storage tank based on complex hydrides and to fully integrate it with a High Temperature Proton Exchange Membrane (HT-PEM) fuel cell stack. A mixed lithium amide/magnesium hydride system was used as the main storage material for the tank, due to its high gravimetric storage capacity and relatively low hydrogen desorption temperature. The mixed lithium amide/magnesium hydride system was coupled with a standard intermetallic compound to take advantage of its capability to release hydrogen at ambient temperature and to ensure a fast start-up of the system. The hydrogen storage tank was designed to feed a 1 kW HT-PEM stack for 2 h to be used for an Auxiliary Power Unit (APU). A full thermal integration was possible thanks to the high operation temperature of the fuel cell and to the relative low temperature (170 °C) for hydrogen release from the mixed lithium amide/magnesium hydride system.

Variation of Marine Geoid Due to Ocean Circulation and Sea Level Change

NASA Astrophysics Data System (ADS)

Chu, P. C.

2017-12-01

Sea level (S) change and ocean circulation largely affect the gravity field and in turns the marine geoid (N). Difference between the two, D = S - N, is the dynamic ocean topography (DOT), whose gradient represents the large-scale surface geostrophic circulations. Thus, temporal variability of marine geoid (δN) is caused by the sea level change (δS) and the DOT variation (δD), δN = δS - δD. Here, δS is identified from temporally varying satellite altimeter measures; δD is calculated from the change of DOT. For large-scale processes with conservation of potential vorticity, the geostrophic flows take minimum energy state. Based on that, a new elliptic equation is derived in this study to determine D. Here, H is the water depth; and (X, Y) are forcing functions calculated from the in-situ density. The well-posed elliptic equation is integrated numerically on 1o grids for the world oceans with the boundary values taken from the mean DOT (1993-2006) field at the NASA/JPL website: https://grace.jpl.nasa.gov/data/get-data/dynamic-ocean-typography/, the forcing function F calculated from the three-dimensional temperature and salinity of the NOAA National Centers for Environmental Information (NCEI) World Ocean Atlas 2013 version 2, and sea-floor topography (H) from the NOAA ETOPO5. The numerical solution compares reasonably well (relative root mean square difference of 0.09) with the NASA/JPL satellite observation of the difference between the time-averaged sea surface height and the geoid. In-situ ocean measurements of temperature, salinity, and velocity have also rapidly advanced such that the global ocean is now continuously monitored by near 4,000 free-drifting profiling floats (called Argo) from the surface to 2000 m depth with all data being relayed and made publicly available within hours after collection (http://www.argo.ucsd.edu/). This provides a huge database of temperature and salinity and in turns the forcing function F for the governing elliptic equation of DOT. Along with satellite altimetry data, the marine geoid (N) can be updated in a short time period. Further application of this elliptic equation method on the high-precision altimetry measurements of SSH such as the Surface Water and Ocean Topography (SWOT) is also presented.

Modeling vegetation heights from high resolution stereo aerial photography: an application for broad-scale rangeland monitoring.

PubMed

Gillan, Jeffrey K; Karl, Jason W; Duniway, Michael; Elaksher, Ahmed

2014-11-01

Vertical vegetation structure in rangeland ecosystems can be a valuable indicator for assessing rangeland health and monitoring riparian areas, post-fire recovery, available forage for livestock, and wildlife habitat. Federal land management agencies are directed to monitor and manage rangelands at landscapes scales, but traditional field methods for measuring vegetation heights are often too costly and time consuming to apply at these broad scales. Most emerging remote sensing techniques capable of measuring surface and vegetation height (e.g., LiDAR or synthetic aperture radar) are often too expensive, and require specialized sensors. An alternative remote sensing approach that is potentially more practical for managers is to measure vegetation heights from digital stereo aerial photographs. As aerial photography is already commonly used for rangeland monitoring, acquiring it in stereo enables three-dimensional modeling and estimation of vegetation height. The purpose of this study was to test the feasibility and accuracy of estimating shrub heights from high-resolution (HR, 3-cm ground sampling distance) digital stereo-pair aerial images. Overlapping HR imagery was taken in March 2009 near Lake Mead, Nevada and 5-cm resolution digital surface models (DSMs) were created by photogrammetric methods (aerial triangulation, digital image matching) for twenty-six test plots. We compared the heights of individual shrubs and plot averages derived from the DSMs to field measurements. We found strong positive correlations between field and image measurements for several metrics. Individual shrub heights tended to be underestimated in the imagery, however, accuracy was higher for dense, compact shrubs compared with shrubs with thin branches. Plot averages of shrub height from DSMs were also strongly correlated to field measurements but consistently underestimated. Grasses and forbs were generally too small to be detected with the resolution of the DSMs. Estimates of vertical structure will be more accurate in plots having low herbaceous cover and high amounts of dense shrubs. Through the use of statistically derived correction factors or choosing field methods that better correlate with the imagery, vegetation heights from HR DSMs could be a valuable technique for broad-scale rangeland monitoring needs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Modeling vegetation heights from high resolution stereo aerial photography: an application for broad-scale rangeland monitoring

USGS Publications Warehouse

Gillan, Jeffrey K.; Karl, Jason W.; Duniway, Michael; Elaksher, Ahmed

2014-01-01

Vertical vegetation structure in rangeland ecosystems can be a valuable indicator for assessing rangeland health and monitoring riparian areas, post-fire recovery, available forage for livestock, and wildlife habitat. Federal land management agencies are directed to monitor and manage rangelands at landscapes scales, but traditional field methods for measuring vegetation heights are often too costly and time consuming to apply at these broad scales. Most emerging remote sensing techniques capable of measuring surface and vegetation height (e.g., LiDAR or synthetic aperture radar) are often too expensive, and require specialized sensors. An alternative remote sensing approach that is potentially more practical for managers is to measure vegetation heights from digital stereo aerial photographs. As aerial photography is already commonly used for rangeland monitoring, acquiring it in stereo enables three-dimensional modeling and estimation of vegetation height. The purpose of this study was to test the feasibility and accuracy of estimating shrub heights from high-resolution (HR, 3-cm ground sampling distance) digital stereo-pair aerial images. Overlapping HR imagery was taken in March 2009 near Lake Mead, Nevada and 5-cm resolution digital surface models (DSMs) were created by photogrammetric methods (aerial triangulation, digital image matching) for twenty-six test plots. We compared the heights of individual shrubs and plot averages derived from the DSMs to field measurements. We found strong positive correlations between field and image measurements for several metrics. Individual shrub heights tended to be underestimated in the imagery, however, accuracy was higher for dense, compact shrubs compared with shrubs with thin branches. Plot averages of shrub height from DSMs were also strongly correlated to field measurements but consistently underestimated. Grasses and forbs were generally too small to be detected with the resolution of the DSMs. Estimates of vertical structure will be more accurate in plots having low herbaceous cover and high amounts of dense shrubs. Through the use of statistically derived correction factors or choosing field methods that better correlate with the imagery, vegetation heights from HR DSMs could be a valuable technique for broad-scale rangeland monitoring needs.

A comparison of remote vs. local influence of El Niño on the coastal circulation of the northeast Pacific

NASA Astrophysics Data System (ADS)

Hermann, Albert J.; Curchitser, Enrique N.; Haidvogel, Dale B.; Dobbins, Elizabeth L.

2009-12-01

A set of spatially nested circulation models is used to explore interannual change in the northeast Pacific (NEP) during 1997-2002, and remote vs. local influence of the 1997-1998 El Niño on this region. Our nested set is based on the primitive equations of motion, and includes a basin-scale model of the north Pacific at ˜40-km resolution (NPac), and a regional model of the Northeast Pacific at ˜10-km resolution. The NEP model spans an area from Baja California through the Bering Sea, from the coast to ˜2000-km offshore. In this context, "remote influence" refers to effects driven by changes in ocean velocity and temperature outside of the NEP domain; "local influence" refers to direct forcing by winds and runoff within the NEP domain. A base run of this model using hindcast winds and runoff for 1996-2002 replicates the dominant spatial modes of sea-surface height anomalies from satellite data, and coastal sea level from tide gauges. We have performed a series of sensitivity runs with the NEP model for 1997-1998, which analyze the response of coastal sea level to: (1) hindcast winds and coastal runoff, as compared to their monthly climatologies and (2) hindcast boundary conditions (from the NPac model), as compared to their monthly climatologies. Results indicate penetration of sea-surface height (SSH) from the basin-scale model into the NEP domain (e.g., remote influence), with propagation as coastal trapped waves from Baja up through Alaska. Most of the coastal sea-level anomaly off Alaska in El Niño years appears due to direct forcing by local winds and runoff (local influence), and such anomalies are much stronger than those produced off California. We quantify these effects as a function of distance along the coastline, and consider how they might impact the coastal ecosystems of the NEP.

Observing and Studying Extreme Low Pressure Events with Altimetry

PubMed Central

Carrère, Loren; Mertz, Françoise; Dorandeu, Joel; Quilfen, Yves; Patoux, Jerome

2009-01-01

The ability of altimetry to detect extreme low pressure events and the relationship between sea level pressure and sea level anomalies during extra-tropical depressions have been investigated. Specific altimeter treatments have been developed for tropical cyclones and applied to obtain a relevant along-track sea surface height (SSH) signal: the case of tropical cyclone Isabel is presented here. The S- and C-band measurements are used because they are less impacted by rain than the Ku-band, and new sea state bias (SSB) and wet troposphere corrections are proposed. More accurate strong altimeter wind speeds are computed thanks to the Young algorithm. Ocean signals not related to atmospheric pressure can be removed with accuracy, even within a Near Real Time context, by removing the maps of sea level anomaly (SLA) provided by SSALTO/Duacs. In the case of Extra-Tropical Depressions, the classical altimeter processing can be used. Ocean signal not related to atmospheric pressure is along-track filtered. The sea level pressure (SLP)-SLA relationship is investigated for the North Atlantic, North Pacific and Indian oceans; three regression models are proposed allowing restoring an altimeter SLP with a mean error of 5 hPa if compared to ECMWF or buoys SLP. The analysis of barotropic simulation outputs points out the regional variability of the SLP/Model Sea Level relationship and the wind effects. PMID:22573955

Experimental investigation of internal tides generated by finite-height topography

NASA Astrophysics Data System (ADS)

Wang, Shuya; Chen, Xu; Wang, Jinhu; Meng, Jing

2018-06-01

Internal tides generated by finite-height topography are investigated in the laboratory, and the particle image velocimetry (PIV) technique is applied to measure the velocity fields. The energy, energy flux, and vertical mode structure of the internal tides are calculated and analyzed. The experimental results indicate that the strength of the wave field is mainly affected by the normalized topography height. The rays radiated from the taller topography are wider than those radiated from the lower topography. Both the experimental and theoretical results indicate that the normalized energy and energy flux of the internal tides are mainly determined by the normalized topography height, and the increase of the two quantities follows a quadratic function, and they almost remain unchanged with different normalized frequencies except for higher frequency. The percentage of energy for mode-1 and mode-2 internal tides is determined not only by frequency but also by topography height. In addition, an "inherent normalized frequency" is observed in the experiment, at which the percentage of energy for mode 1 and mode 2 does not vary with topography height. The decay rate of internal tide energy in the near field and far field is also estimated, with average values of 36.5 and 7.5%, respectively.

Peregrine System User Basics | High-Performance Computing | NREL

Science.gov Websites

peregrine.hpc.nrel.gov or to one of the login nodes. Example commands to access Peregrine from a Linux or Mac OS X system Code Example Create a file called hello.F90 containing the following code: program hello write(6 information by enclosing it in brackets < >. For example: $ ssh -Y

Running STAR-CCM+ Software on the Peregrine System | High-Performance

Science.gov Websites

/bin/lmutil lmstat -c 1999@wind-lms.nrel.gov -a module load star-ccm export TMPDIR="/scratch/$USER + -power -rsh "ssh -oStrictHostKeyChecking=no" -machinefile nodelist -np $(($nodes*$cores , type the commands from the SLURM script and make sure the job runs: module load star-ccm export TMPDIR

Characterization and expression analysis of two cDNAs encoding Xa1 and oxysterol binding proteins in sorghum (Sorghum bicolor)

USDA-ARS?s Scientific Manuscript database

Using suppression subtractive hybridization (SSH) and subsequent microarray analysis, expression profiles of sorghum genes responsive to greenbug phloem-feeding were obtained and identified. Among the profiles, two cDNAs designated to MM73 and MM95 were identified to encode Xa1 (Xa1) and oxysterol ...

A generalized multivariate regression model for modelling ocean wave heights

NASA Astrophysics Data System (ADS)

Wang, X. L.; Feng, Y.; Swail, V. R.

2012-04-01

In this study, a generalized multivariate linear regression model is developed to represent the relationship between 6-hourly ocean significant wave heights (Hs) and the corresponding 6-hourly mean sea level pressure (MSLP) fields. The model is calibrated using the ERA-Interim reanalysis of Hs and MSLP fields for 1981-2000, and is validated using the ERA-Interim reanalysis for 2001-2010 and ERA40 reanalysis of Hs and MSLP for 1958-2001. The performance of the fitted model is evaluated in terms of Pierce skill score, frequency bias index, and correlation skill score. Being not normally distributed, wave heights are subjected to a data adaptive Box-Cox transformation before being used in the model fitting. Also, since 6-hourly data are being modelled, lag-1 autocorrelation must be and is accounted for. The models with and without Box-Cox transformation, and with and without accounting for autocorrelation, are inter-compared in terms of their prediction skills. The fitted MSLP-Hs relationship is then used to reconstruct historical wave height climate from the 6-hourly MSLP fields taken from the Twentieth Century Reanalysis (20CR, Compo et al. 2011), and to project possible future wave height climates using CMIP5 model simulations of MSLP fields. The reconstructed and projected wave heights, both seasonal means and maxima, are subject to a trend analysis that allows for non-linear (polynomial) trends.

Fabrication of near-field optical apertures in aluminium by a highly selective corrosion process in the evanescent field.

PubMed

Haefliger, D; Stemmer, A

2003-03-01

A simple, one-step process to fabricate high-quality apertures for scanning near-field optical microscope probes based on aluminium-coated silicon nitride cantilevers is presented. A thin evanescent optical field at a glass-water interface was used to heat the aluminium at the tip apex due to light absorption. The heat induced a breakdown of the passivating oxide layer and local corrosion of the metal, which selectively exposed the front-most part of the probe tip from the aluminium. Apertures with a protruding silicon nitride tip up to 72 nm in height were fabricated. The height of the protrusion was controlled by the extent of the evanescent field, whereas the diameter depended on the geometry of the probe substrate. The corrosion process proved to be self-terminating, yielding highly reproducible tip heights. Near-field optical resolution in a transmission mode of 85 nm was demonstrated.

Monitoring small pioneer trees in the forest-tundra ecotone: using multi-temporal airborne laser scanning data to model height growth.

PubMed

Hauglin, Marius; Bollandsås, Ole Martin; Gobakken, Terje; Næsset, Erik

2017-12-08

Monitoring of forest resources through national forest inventory programmes is carried out in many countries. The expected climate changes will affect trees and forests and might cause an expansion of trees into presently treeless areas, such as above the current alpine tree line. It is therefore a need to develop methods that enable the inclusion of also these areas into monitoring programmes. Airborne laser scanning (ALS) is an established tool in operational forest inventories, and could be a viable option for monitoring tasks. In the present study, we used multi-temporal ALS data with point density of 8-15 points per m 2 , together with field measurements from single trees in the forest-tundra ecotone along a 1500-km-long transect in Norway. The material comprised 262 small trees with an average height of 1.78 m. The field-measured height growth was derived from height measurements at two points in time. The elapsed time between the two measurements was 4 years. Regression models were then used to model the relationship between ALS-derived variables and tree heights as well as the height growth. Strong relationships between ALS-derived variables and tree heights were found, with R 2 values of 0.93 and 0.97 for the two points in time. The relationship between the ALS data and the field-derived height growth was weaker, with R 2 values of 0.36-0.42. A cross-validation gave corresponding results, with root mean square errors of 19 and 11% for the ALS height models and 60% for the model relating ALS data to single-tree height growth.

Potential of Multitemporal Tandem-X Derived Crop Surface Models for Maize Growth Monitoring

NASA Astrophysics Data System (ADS)

Hütt, C.; Tilly, N.; Schiedung, H.; Bareth, G.

2016-06-01

In this study, first results of retrieving plant heights of maize fields from multitemporal TanDEM-X images are shown. Three TanDEM-X dual polarization spotlight acquisitions were taken over a rural area in Germany in the growing season 2014. By interferometric processing, digital terrain models (DTM) were derived for each date with 5m resolution. From the data of the first acquisition (June 1st) taken before planting, a DTM of the bare ground is generated. The data of the following acquisition dates (July 15th, July 26th) are used to establish crop surface models (CSM). A CSM represents the crop surface of a whole field in a high resolution. By subtracting the DTM of the ground from each CSM, the actual plant height is calculated. Within these data sets 30 maize fields in the area of interest could be detected and verified by external land use data. Besides the spaceborne measurements, one of the maize fields was intensively investigated using terrestrial laser scanning (TLS), which was carried out at the same dates as the predicted TanDEM-X acquisitions. Visual inspection of the derived plant heights, and accordance of the individually processed polarisations over the maize fields, demonstrate the feasibility of the proposed method. Unfortunately, the infield variability of the intensively monitored field could not be successfully captured in the TanDEM-X derived plant heights and merely the general trend is visible. Nevertheless, the study shows the potential of the TanDEM-X constellation for maize height monitoring on field level.

Time Series of Tropical-Forest Structure from TanDEM-X, Transformed to Time Series of Biomass by MODIS

NASA Astrophysics Data System (ADS)

Treuhaft, R. N.; Baccini, A.; Goncalves, F. G.; Lei, Y.; Keller, M.; Walker, W. S.

2017-12-01

Tropical forests account for about 50% of the world's forested biomass, and play a critical role in the control of atmospheric carbon dioxide. Large-scale (1000's of km) changes in forest structure and biomass bear on global carbon source-sink dynamics, while small-scale (< 100 m) changes bear on deforestation and degradation monitoring. After describing the interferometric SAR (InSAR) phase-height observation, we show forest phase-height time series from the TanDEM-X radar interferometer at X-band (3 cm), taken with monthly and sub-hectare temporal and spatial resolution, respectively. The measurements were taken with more than 30 TanDEM-X passes over Tapajós National Forest in the Brazilian Amazon between 2011 and 2014. The transformation of phase-height rates into aboveground biomass (AGB) rates is based on the idea that the change in AGB due to a change in phase-height depends on the plot's AGB. Plots with higher AGB will produce more AGB for a given increase in height or phase-height. Postulating a power-law dependence of plot-level mass density on physical height, we previously found that the best conversion factors for transforming phase-height rate to AGB rate were indeed dependent on AGB. For 78 plots, we demonstrated AGB rates from InSAR phase-height rates using AGB from field measurements. For regional modeling of the Amazon Basin, field measurements of AGB, to specify the conversion factors, is impractical. Conversion factors from InSAR phase-height rate to AGB rate in this talk will be based on AGB derived from the Moderate Resolution Imaging Spectroradiometer (MODIS). AGB measurement from MODIS is based on the spectral reflectance of 7 bands from the visible to short wave infrared, and auxiliary metrics describing the variance in reflectance. The mapping of MODIS reflectance to AGB is enabled by training a machine learning algorithm with lidar-derived AGB data, which are in turn trained by field measurements for small areas. The performance of TanDEM-X AGB rate from MODIS-derived conversion factors will be compared to that derived from field-based conversion factors. We will also attempt to improve phase-height rate to AGB rate transformation by deriving improved models of mass density dependences on height, based on the aggregation of single-stem allometrics.

Assessment of headlamp glare and potential countermeasures : the effects of headlamp mounting height

DOT National Transportation Integrated Search

2008-01-01

This project examined the effects of headlamp mounting height on the disability and the sensation of discomfort caused by glare. This was performed through a field study and a simulation study. In the field study, subjects evaluated the degree of gla...

An antithetic variate to facilitate upper-stem height measurements for critical height sampling with importance sampling

Treesearch

Thomas B. Lynch; Jeffrey H. Gove

2013-01-01

Critical height sampling (CHS) estimates cubic volume per unit area by multiplying the sum of critical heights measured on trees tallied in a horizontal point sample (HPS) by the HPS basal area factor. One of the barriers to practical application of CHS is the fact that trees near the field location of the point-sampling sample point have critical heights that occur...

All-sky photogrammetry techniques to georeference a cloud field

NASA Astrophysics Data System (ADS)

Crispel, Pierre; Roberts, Gregory

2018-01-01

In this study, we present a novel method of identifying and geolocalizing cloud field elements from a portable all-sky camera stereo network based on the ground and oriented towards zenith. The methodology is mainly based on stereophotogrammetry which is a 3-D reconstruction technique based on triangulation from corresponding stereo pixels in rectified images. In cases where clouds are horizontally separated, identifying individual positions is performed with segmentation techniques based on hue filtering and contour detection algorithms. Macroscopic cloud field characteristics such as cloud layer base heights and velocity fields are also deduced. In addition, the methodology is fitted to the context of measurement campaigns which impose simplicity of implementation, auto-calibration, and portability. Camera internal geometry models are achieved a priori in the laboratory and validated to ensure a certain accuracy in the peripheral parts of the all-sky image. Then, stereophotogrammetry with dense 3-D reconstruction is applied with cameras spaced 150 m apart for two validation cases. The first validation case is carried out with cumulus clouds having a cloud base height at 1500 m a.g.l. The second validation case is carried out with two cloud layers: a cumulus fractus layer with a base height at 1000 m a.g.l. and an altocumulus stratiformis layer with a base height of 2300 m a.g.l. Velocity fields at cloud base are computed by tracking image rectangular patterns through successive shots. The height uncertainty is estimated by comparison with a Vaisala CL31 ceilometer located on the site. The uncertainty on the horizontal coordinates and on the velocity field are theoretically quantified by using the experimental uncertainties of the cloud base height and camera orientation. In the first cumulus case, segmentation of the image is performed to identify individuals clouds in the cloud field and determine the horizontal positions of the cloud centers.

Workload-Driven Design and Evaluation of Large-Scale Data-Centric Systems

DTIC Science & Technology

2012-05-09

in the batch zone in and out of a low-power state, e.g., sending a “ hibernate ” command via ssh and using Wake-on-LAN or related technologies [85]. If...parameter values for experiments with stand-alone jobs. The mapred.child.java.opts parameter sets the maximum virtual memory of the Java child pro- cesses

Using ANSYS Fluent on the Peregrine System | High-Performance Computing |

Science.gov Websites

two ways to run ANSYS CFD interactively on NREL HPC systems. When graphics rendering is not a critical when used as above is quite low (e.g., windows take a long time to come up). For small tasks, it may be , go to Category/Connection/SSH, and check off the box "enable compression". When graphics

The Implications of the Concept of Lifelong Education for the Secondary School in the United Kingdom.

ERIC Educational Resources Information Center

Fincham, David

1982-01-01

Rapid changes in social circumstances and conditions will have a profound effect on ideas and attitudes concerning the role of the school. Schools ought to take account of these considerations and to examine critically their relationship with the wider society. (Falmer Press, Falmer House, Barcombe, Nr Lewes, East Sussex, BN8 5DL, UK) (SSH)

Comparison study of noise reduction algorithms in dual energy chest digital tomosynthesis

NASA Astrophysics Data System (ADS)

Lee, D.; Kim, Y.-S.; Choi, S.; Lee, H.; Choi, S.; Kim, H.-J.

2018-04-01

Dual energy chest digital tomosynthesis (CDT) is a recently developed medical technique that takes advantage of both tomosynthesis and dual energy X-ray images. However, quantum noise, which occurs in dual energy X-ray images, strongly interferes with diagnosis in various clinical situations. Therefore, noise reduction is necessary in dual energy CDT. In this study, noise-compensating algorithms, including a simple smoothing of high-energy images (SSH) and anti-correlated noise reduction (ACNR), were evaluated in a CDT system. We used a newly developed prototype CDT system and anthropomorphic chest phantom for experimental studies. The resulting images demonstrated that dual energy CDT can selectively image anatomical structures, such as bone and soft tissue. Among the resulting images, those acquired with ACNR showed the best image quality. Both coefficient of variation and contrast to noise ratio (CNR) were the highest in ACNR among the three different dual energy techniques, and the CNR of bone was significantly improved compared to the reconstructed images acquired at a single energy. This study demonstrated the clinical value of dual energy CDT and quantitatively showed that ACNR is the most suitable among the three developed dual energy techniques, including standard log subtraction, SSH, and ACNR.

On the relation between the peak frequency and the corresponding rise time of solar microwave impulsive bursts and the height dependence of magnetic fields

NASA Astrophysics Data System (ADS)

Zhao, Ren-Yang; Magun, Andreas; Schanda, Erwin

1990-12-01

Results are reported from a correlation analysis for 57 microwave impulsive bursts observed at six frequencies. A regression line between the peak frequency and the corresponding rise time of microwave impulsive bursts is obtained, with a correlation coefficient of -0.43. This can be explained in the frame of a thermal model. The magnetic field decrease with height has to be much slower than in a dipole field in order to explain the weak dependence of f(p) on t(r). This decrease of magnetic field with height in burst sources is based on the relationship between f(p) and t(r) found by assuming a thermal flare model with a collisionless conduction front.

Modulation of the electronic property of phosphorene by wrinkle and vertical electric field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Yan; Wei, Zhongming, E-mail: zmwei@semi.ac.cn; Li, Jingbo, E-mail: jbli@semi.ac.cn

2015-09-14

The electronic properties of wrinkled phosphorene and its response to charge injection and external vertical electric field have been studied using first-principles calculations. It is found that small-size wrinkle systems have lower energy than wrinkle-free monolayer, suggesting that free-standing phosphorene spontaneously forms small protrusion on its nanosheet. The ratio of wrinkle height to curvature radius increases with enlarging height, indicating a promotion of field enhancement factor. Furthermore, the injected charges mostly distribute at peak and valley. Direct-to-indirect band-gap transition has been found for zigzag wrinkle with height of 14.81 Å. The band gaps of wrinkled nanosheets decrease almost linearly with increasingmore » field, which is caused by charge separation of valence band maximum and conduction band minimum.« less

A Browser-Based Multi-User Working Environment for Physicists

NASA Astrophysics Data System (ADS)

Erdmann, M.; Fischer, R.; Glaser, C.; Klingebiel, D.; Komm, M.; Müller, G.; Rieger, M.; Steggemann, J.; Urban, M.; Winchen, T.

2014-06-01

Many programs in experimental particle physics do not yet have a graphical interface, or demand strong platform and software requirements. With the most recent development of the VISPA project, we provide graphical interfaces to existing software programs and access to multiple computing clusters through standard web browsers. The scalable clientserver system allows analyses to be performed in sizable teams, and disburdens the individual physicist from installing and maintaining a software environment. The VISPA graphical interfaces are implemented in HTML, JavaScript and extensions to the Python webserver. The webserver uses SSH and RPC to access user data, code and processes on remote sites. As example applications we present graphical interfaces for steering the reconstruction framework OFFLINE of the Pierre-Auger experiment, and the analysis development toolkit PXL. The browser based VISPA system was field-tested in biweekly homework of a third year physics course by more than 100 students. We discuss the system deployment and the evaluation by the students.

Gene Expression Profiling in Fish Toxicology: A Review.

PubMed

Kumar, Girish; Denslow, Nancy D

In this review, we present an overview of transcriptomic responses to chemical exposures in a variety of fish species. We have discussed the use of several molecular approaches such as northern blotting, differential display reverse transcription-polymerase chain reaction (DDRT-PCR), suppression subtractive hybridization (SSH), real time quantitative PCR (RT-qPCR), microarrays, and next-generation sequencing (NGS) for measuring gene expression. These techniques have been mainly used to measure the toxic effects of single compounds or simple mixtures in laboratory conditions. In addition, only few studies have been conducted to examine the biological significance of differentially expressed gene sets following chemical exposure. Therefore, future studies should focus more under field conditions using a multidisciplinary approach (genomics, proteomics and metabolomics) to understand the synergetic effects of multiple environmental stressors and to determine the functional significance of differentially expressed genes. Nevertheless, recent developments in NGS technologies and decreasing costs of sequencing holds the promise to uncover the complexity of anthropogenic impacts and biological effects in wild fish populations.

Coronal magnetic fields from multiple type II bursts

NASA Astrophysics Data System (ADS)

Honnappa, Vijayakumar; Raveesha, K. H.; Subramanian, K. R.

Coronal magnetic fields from multiple type II bursts Vijayakumar H Doddamani1*, Raveesha K H2 and Subramanian3 1Bangalore University, Bangalore, Karnataka state, India 2CMR Institute of Technology, Bangalore, Karnataka state, India 3 Retd, Indian Institute of Astrophysics, Bangalore, Karnataka state, India Abstract Magnetic fields play an important role in the astrophysical processes occurring in solar corona. In the solar atmosphere, magnetic field interacts with the plasma, producing abundant eruptive activities. They are considered to be the main factors for coronal heating, particle acceleration and the formation of structures like prominences, flares and Coronal Mass Ejections. The magnetic field in solar atmosphere in the range of 1.1-3 Rsun is especially important as an interface between the photospheric magnetic field and the solar wind. Its structure and time dependent change affects space weather by modifying solar wind conditions, Cho (2000). Type II doublet bursts can be used for the estimation of the strength of the magnetic field at two different heights. Two type II bursts occur sometimes in sequence. By relating the speed of the type II radio burst to Alfven Mach Number, the Alfven speed of the shock wave generating type II radio burst can be calculated. Using the relation between the Alfven speed and the mean frequency of emission, the magnetic field strength can be determined at a particular height. We have used the relative bandwidth and drift rate properties of multiple type II radio bursts to derive magnetic field strengths at two different heights and also the gradient of the magnetic field in the outer corona. The magnetic field strength has been derived for different density factors. It varied from 1.2 to 2.5 gauss at a solar height of 1.4 Rsun. The empirical relation of the variation of the magnetic field with height is found to be of the form B(R) = In the present case the power law index ‘γ’ varied from -3 to -2 for variation of density factor from 1 to 5. Key Words: Magnetic field, photosphere, corona, solar wind, bursts *Email:drvkdmani@gmail.com

Mapping forest height in Alaska using GLAS, Landsat composites, and airborne LiDAR

USGS Publications Warehouse

Peterson, Birgit; Nelson, Kurtis

2014-01-01

Vegetation structure, including forest canopy height, is an important input variable to fire behavior modeling systems for simulating wildfire behavior. As such, forest canopy height is one of a nationwide suite of products generated by the LANDFIRE program. In the past, LANDFIRE has relied on a combination of field observations and Landsat imagery to develop existing vegetation structure products. The paucity of field data in the remote Alaskan forests has led to a very simple forest canopy height classification for the original LANDFIRE forest height map. To better meet the needs of data users and refine the map legend, LANDFIRE incorporated ICESat Geoscience Laser Altimeter System (GLAS) data into the updating process when developing the LANDFIRE 2010 product. The high latitude of this region enabled dense coverage of discrete GLAS samples, from which forest height was calculated. Different methods for deriving height from the GLAS waveform data were applied, including an attempt to correct for slope. These methods were then evaluated and integrated into the final map according to predefined criteria. The resulting map of forest canopy height includes more height classes than the original map, thereby better depicting the heterogeneity of the landscape, and provides seamless data for fire behavior analysts and other users of LANDFIRE data.

Solar magnetic field studies using the 12 micron emission lines. II - Stokes profiles and vector field samples in sunspots

NASA Technical Reports Server (NTRS)

Hewagama, Tilak; Deming, Drake; Jennings, Donald E.; Osherovich, Vladimir; Wiedemann, Gunter; Zipoy, David; Mickey, Donald L.; Garcia, Howard

1993-01-01

Polarimetric observations at 12 microns of two sunpots are reported. The horizontal distribution of parameters such as magnetic field strength, inclination, azimuth, and magnetic field filling factors are presented along with information about the height dependence of the magnetic field strength. Comparisons with contemporary magnetostatic sunspot models are made. The magnetic data are used to estimate the height of 12 micron line formation. From the data, it is concluded that within a stable sunspot there are no regions that are magnetically filamentary, in the sense of containing both strong-field and field-free regions.

Wavelet-based hierarchical surface approximation from height fields

Treesearch

Sang-Mook Lee; A. Lynn Abbott; Daniel L. Schmoldt

2004-01-01

This paper presents a novel hierarchical approach to triangular mesh generation from height fields. A wavelet-based multiresolution analysis technique is used to estimate local shape information at different levels of resolution. Using predefined templates at the coarsest level, the method constructs an initial triangulation in which underlying object shapes are well...

Estimating Stability Class in the Field

Treesearch

Leonidas G. Lavdas

1997-01-01

A simple and easily remembered method is described for estimating cloud ceiling height in the field. Estimating ceiling height provides the means to estimate stability class, a parameter used to help determine Dispersion Index and Low Visibility Occurrence Risk Index, indices used as smoke management aids. Stability class is also used as an input to VSMOKE, an...

Estimating vehicle height using homographic projections

DOEpatents

Cunningham, Mark F; Fabris, Lorenzo; Gee, Timothy F; Ghebretati, Jr., Frezghi H; Goddard, James S; Karnowski, Thomas P; Ziock, Klaus-peter

2013-07-16

Multiple homography transformations corresponding to different heights are generated in the field of view. A group of salient points within a common estimated height range is identified in a time series of video images of a moving object. Inter-salient point distances are measured for the group of salient points under the multiple homography transformations corresponding to the different heights. Variations in the inter-salient point distances under the multiple homography transformations are compared. The height of the group of salient points is estimated to be the height corresponding to the homography transformation that minimizes the variations.

Spatiotemporal analysis of brightness induction

PubMed Central

McCourt, Mark E.

2011-01-01

Brightness induction refers to a class of visual illusions in which the perceived intensity of a region of space is influenced by the luminance of surrounding regions. These illusions are significant because they provide insight into the neural organization of the visual system. A novel quadrature-phase motion cancelation technique was developed to measure the magnitude of the grating induction brightness illusion across a wide range of spatial frequencies, temporal frequencies and test field heights. Canceling contrast is greatest at low frequencies and declines with increasing frequency in both dimensions, and with increasing test field height. Canceling contrast scales as the product of inducing grating spatial frequency and test field height (the number of inducing grating cycles per test field height). When plotted using a spatial axis which indexes this product, the spatiotemporal induction surfaces for four test field heights can be described as four partially overlapping sections of a single larger surface. These properties of brightness induction are explained in the context of multiscale spatial filtering. The present study is the first to measure the magnitude of grating induction as a function of temporal frequency. Taken in conjunction with several other studies (Blakeslee & McCourt, 2008; Robinson & de Sa, 2008; Magnussen & Glad, 1975) the results of this study illustrate that at least one form of brightness induction is very much faster than that reported by DeValois et al. (1986) and Rossi and Paradiso (1996), and are inconsistent with the proposition that brightness induction results from a slow “filling in” process. PMID:21763339

On the relation between the peak frequency and the corresponding rise time of solar microwave impulsive bursts and the height dependence of magnetic fields

NASA Astrophysics Data System (ADS)

Ren-Yang, Zhao; Magun, Andreas; Schanda, Erwin

1990-12-01

In the present paper we report the results of a correlation analysis for 57 microwave impulsive bursts observed at six frequencies in which we have obtained a regression line between the peak frequency and the corresponding rise time of microwave impulsive bursts: {ie361-01} (with a correlation coefficient of - 0.43). This can be explained in the frame of a thermal model. The magnetic field decrease with height has to be much slower than in a dipole field in order to explain the weak dependence of f p on t r . This decrease of magnetic field with height in burst sources is based on the relationship between f p and t r found by assuming a thermal flare model with a collisionless conduction front.

Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States)

PubMed Central

Bowers, John C.; Griffitt, Kimberly J.; Molina, Vanessa; Clostio, Rachel W.; Pei, Shaofeng; Laws, Edward; Paranjpye, Rohinee N.; Strom, Mark S.; Chen, Arlene; Hasan, Nur A.; Huq, Anwar; Noriea, Nicholas F.; Grimes, D. Jay; Colwell, Rita R.

2012-01-01

Vibrio parahaemolyticus and Vibrio vulnificus, which are native to estuaries globally, are agents of seafood-borne or wound infections, both potentially fatal. Like all vibrios autochthonous to coastal regions, their abundance varies with changes in environmental parameters. Sea surface temperature (SST), sea surface height (SSH), and chlorophyll have been shown to be predictors of zooplankton and thus factors linked to vibrio populations. The contribution of salinity, conductivity, turbidity, and dissolved organic carbon to the incidence and distribution of Vibrio spp. has also been reported. Here, a multicoastal, 21-month study was conducted to determine relationships between environmental parameters and V. parahaemolyticus and V. vulnificus populations in water, oysters, and sediment in three coastal areas of the United States. Because ecologically unique sites were included in the study, it was possible to analyze individual parameters over wide ranges. Molecular methods were used to detect genes for thermolabile hemolysin (tlh), thermostable direct hemolysin (tdh), and tdh-related hemolysin (trh) as indicators of V. parahaemolyticus and the hemolysin gene vvhA for V. vulnificus. SST and suspended particulate matter were found to be strong predictors of total and potentially pathogenic V. parahaemolyticus and V. vulnificus. Other predictors included chlorophyll a, salinity, and dissolved organic carbon. For the ecologically unique sites included in the study, SST was confirmed as an effective predictor of annual variation in vibrio abundance, with other parameters explaining a portion of the variation not attributable to SST. PMID:22865080

Spectral Interpretation of Wave-vortex Duality in Northern South China Sea

NASA Astrophysics Data System (ADS)

Cao, H.; Jing, Z.; Yan, T.

2017-12-01

The mesoscale to submesocale oceanic dynamics are characterized by a joint effect of vortex and wave component, which primarily declares the partition between geostrophic balanced and unbalanced flows. The spectral method is a favorable approach that can afford the muti-scale analysis. This study investigates the characteristics of horizontal wavenumber spectra in Nothern South China Sea using orbital altimeter data (SARA/AltiKa), 13-yr shipboard ADCP (Acoustic Doppler Current Profiler) measurements (2014-2016), and a high-resolution numerical simulation (llc4320 Mitgcm). The observed SSH (sea surface height) spectrum presents a conspicuous transition at scales of 50-100 km, which clearly shows the inconsistency with geostrophic balance. The Helmholtz decomposition separating the wave and vortex energy for the spectra of ADCP and numerical model data shows that ageostrophic flows should be responsible for the spectral discrepancy with the QG (qusi-geostrophic) turbulence theory. Generally, it is found that inertia-gravity waves (including internal tides) govern the significant kinetic energy in the submesoscale range in Northern South China Sea. More specific analysis suggests that the wave kinetic energy can extend to a large scale of 500 km or more from the zonal velocity spectra at the left-center of Luzon Strait, which appears to be dominated by inertia-gravity waves likely emitted by the intrusion of the west pacific at Luzon Strait. Instead, the development of eddy kinetic energy at this place is strictly constrained by the width of the strait.

Applications That Participate in Their Own Defense (APOD)

DTIC Science & Technology

2003-05-01

bandwidth requirements from multiple applications and uses ssh to directly login the RSVP routers to reconfigure the priority queues. This approach...detect flooding. 3 Emerald makes use of some signature matching techniques on BSM logs, but the unique strength of Emerald technology is in event...mechanisms that provide awareness, and IDSs form an important class of these4. We investigated several COTS and research IDSs including Emerald

A Technique for Presenting a Deceptive Dynamic Network Topology

DTIC Science & Technology

2013-03-01

Comment RIP Routing Information Protocol SNOS Systemic Network Obfuscation System SSH Secure Shell TCP Transmission Control Protocol TTL time to live...because it sacrifices elements available in Transmission Control Protocol ( TCP ) such as ordered delivery of packets, delivery confirmation and duplication...avoidance [4]. Of note, some traceroute implementations use TCP packets since they are able to pass through firewalls which are typically configured

Similarities and Differences in Patterns and Geolocation of SSH Attack Data

DTIC Science & Technology

2015-09-01

failed inputs. ..................................................................................14  Figure 7.  Latest “ passwd ” commands entered by...also has fake file contents to allow an attacker to “cat” files like /etc/ passwd [12]. Kippo saves all downloaded files for later inspection. The...overall post-compromise activity, human activity inside the honeypot, top 10 inputs (overall), top 10 successful inputs, top 10 failed inputs, passwd

Characterization of resistance to pine wood nematode infection in Pinus thunbergii using suppression subtractive hybridization.

PubMed

Hirao, Tomonori; Fukatsu, Eitaro; Watanabe, Atsushi

2012-01-24

Pine wilt disease is caused by the pine wood nematode, Bursaphelenchus xylophilus, which threatens pine forests and forest ecosystems worldwide and causes serious economic losses. In the 40 years since the pathogen was identified, the physiological changes occurring as the disease progresses have been characterized using anatomical and biochemical methods, and resistant trees have been selected via breeding programs. However, no studies have assessed the molecular genetics, e.g. transcriptional changes, associated with infection-induced physiological changes in resistant or susceptible trees. We constructed seven subtractive suppression hybridization (SSH) cDNA libraries using time-course sampling of trees inoculated with pine wood nematode at 1, 3, or 7 days post-inoculation (dpi) in susceptible trees and at 1, 3, 7, or 14 dpi in resistant trees. A total of 3,299 sequences was obtained from these cDNA libraries, including from 138 to 315 non-redundant sequences in susceptible SSH libraries and from 351 to 435 in resistant SSH libraries. Using Gene Ontology hierarchy, those non-redundant sequences were classified into 15 subcategories of the biological process Gene Ontology category and 17 subcategories of the molecular function category. The transcriptional components revealed by the Gene Ontology classification clearly differed between resistant and susceptible libraries. Some transcripts were discriminative: expression of antimicrobial peptide and putative pathogenesis-related genes (e.g., PR-1b, 2, 3, 4, 5, 6) was much higher in susceptible trees than in resistant trees at every time point, whereas expression of PR-9, PR-10, and cell wall-related genes (e.g., for hydroxyproline-rich glycoprotein precursor and extensin) was higher in resistant trees than in susceptible trees at 7 and 14 dpi. Following inoculation with pine wood nematode, there were marked differences between resistant and susceptible trees in transcript diversity and the timing and level of transcripts expressed in common; in particular, expression of stress response and defense genes differed. This study provided new insight into the differences in the physiological changes between resistant and susceptible trees that have been observed in anatomical and biochemical studies.

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels.

PubMed

Pieretti, Isabelle; Royer, Monique; Barbe, Valérie; Carrere, Sébastien; Koebnik, Ralf; Couloux, Arnaud; Darrasse, Armelle; Gouzy, Jérôme; Jacques, Marie-Agnès; Lauber, Emmanuelle; Manceau, Charles; Mangenot, Sophie; Poussier, Stéphane; Segurens, Béatrice; Szurek, Boris; Verdier, Valérie; Arlat, Matthieu; Gabriel, Dean W; Rott, Philippe; Cociancich, Stéphane

2012-11-21

Xanthomonas albilineans causes leaf scald, a lethal disease of sugarcane. X. albilineans exhibits distinctive pathogenic mechanisms, ecology and taxonomy compared to other species of Xanthomonas. For example, this species produces a potent DNA gyrase inhibitor called albicidin that is largely responsible for inducing disease symptoms; its habitat is limited to xylem; and the species exhibits large variability. A first manuscript on the complete genome sequence of the highly pathogenic X. albilineans strain GPE PC73 focused exclusively on distinctive genomic features shared with Xylella fastidiosa-another xylem-limited Xanthomonadaceae. The present manuscript on the same genome sequence aims to describe all other pathogenicity-related genomic features of X. albilineans, and to compare, using suppression subtractive hybridization (SSH), genomic features of two strains differing in pathogenicity. Comparative genomic analyses showed that most of the known pathogenicity factors from other Xanthomonas species are conserved in X. albilineans, with the notable absence of two major determinants of the "artillery" of other plant pathogenic species of Xanthomonas: the xanthan gum biosynthesis gene cluster, and the type III secretion system Hrp (hypersensitive response and pathogenicity). Genomic features specific to X. albilineans that may contribute to specific adaptation of this pathogen to sugarcane xylem vessels were also revealed. SSH experiments led to the identification of 20 genes common to three highly pathogenic strains but missing in a less pathogenic strain. These 20 genes, which include four ABC transporter genes, a methyl-accepting chemotaxis protein gene and an oxidoreductase gene, could play a key role in pathogenicity. With the exception of hypothetical proteins revealed by our comparative genomic analyses and SSH experiments, no genes potentially involved in any offensive or counter-defensive mechanism specific to X. albilineans were identified, supposing that X. albilineans has a reduced artillery compared to other pathogenic Xanthomonas species. Particular attention has therefore been given to genomic features specific to X. albilineans making it more capable of evading sugarcane surveillance systems or resisting sugarcane defense systems. This study confirms that X. albilineans is a highly distinctive species within the genus Xanthomonas, and opens new perpectives towards a greater understanding of the pathogenicity of this destructive sugarcane pathogen.

Challenges in Defining Tsunami Wave Height

NASA Astrophysics Data System (ADS)

Stroker, K. J.; Dunbar, P. K.; Mungov, G.; Sweeney, A.; Arcos, N. P.

2017-12-01

The NOAA National Centers for Environmental Information (NCEI) and co-located World Data Service for Geophysics maintain the global tsunami archive consisting of the historical tsunami database, imagery, and raw and processed water level data. The historical tsunami database incorporates, where available, maximum wave heights for each coastal tide gauge and deep-ocean buoy that recorded a tsunami signal. These data are important because they are used for tsunami hazard assessment, model calibration, validation, and forecast and warning. There have been ongoing discussions in the tsunami community about the correct way to measure and report these wave heights. It is important to understand how these measurements might vary depending on how the data were processed and the definition of maximum wave height. On September 16, 2015, an 8.3 Mw earthquake located 48 km west of Illapel, Chile generated a tsunami that was observed all over the Pacific region. We processed the time-series water level data for 57 tide gauges that recorded this tsunami and compared the maximum wave heights determined from different definitions. We also compared the maximum wave heights from the NCEI-processed data with the heights reported by the NOAA Tsunami Warning Centers. We found that in the near field different methods of determining the maximum tsunami wave heights could result in large differences due to possible instrumental clipping. We also found that the maximum peak is usually larger than the maximum amplitude (½ peak-to-trough), but the differences for the majority of the stations were <20 cm. For this event, the maximum tsunami wave heights determined by either definition (maximum peak or amplitude) would have validated the forecasts issued by the NOAA Tsunami Warning Centers. Since there is currently only one field in the NCEI historical tsunami database to store the maximum tsunami wave height, NCEI will consider adding an additional field for the maximum peak measurement.

Challenges in Defining Tsunami Wave Heights

NASA Astrophysics Data System (ADS)

Dunbar, Paula; Mungov, George; Sweeney, Aaron; Stroker, Kelly; Arcos, Nicolas

2017-08-01

The National Oceanic and Atmospheric Administration (NOAA) National Centers for Environmental Information (NCEI) and co-located World Data Service for Geophysics maintain the global tsunami archive consisting of the historical tsunami database, imagery, and raw and processed water level data. The historical tsunami database incorporates, where available, maximum wave heights for each coastal tide gauge and deep-ocean buoy that recorded a tsunami signal. These data are important because they are used for tsunami hazard assessment, model calibration, validation, and forecast and warning. There have been ongoing discussions in the tsunami community about the correct way to measure and report these wave heights. It is important to understand how these measurements might vary depending on how the data were processed and the definition of maximum wave height. On September 16, 2015, an 8.3 M w earthquake located 48 km west of Illapel, Chile generated a tsunami that was observed all over the Pacific region. We processed the time-series water level data for 57 coastal tide gauges that recorded this tsunami and compared the maximum wave heights determined from different definitions. We also compared the maximum wave heights from the NCEI-processed data with the heights reported by the NOAA Tsunami Warning Centers. We found that in the near field different methods of determining the maximum tsunami wave heights could result in large differences due to possible instrumental clipping. We also found that the maximum peak is usually larger than the maximum amplitude (½ peak-to-trough), but the differences for the majority of the stations were <20 cm. For this event, the maximum tsunami wave heights determined by either definition (maximum peak or amplitude) would have validated the forecasts issued by the NOAA Tsunami Warning Centers. Since there is currently only one field in the NCEI historical tsunami database to store the maximum tsunami wave height for each tide gauge and deep-ocean buoy, NCEI will consider adding an additional field for the maximum peak measurement.

Field performance of Nuttall Oak on former agricultural fields: Initial effects of nursery source and competition control

Treesearch

Emile S. Gardiner; K. Francis Salifu; Douglass F. Jacobs; George Hernandez; Ronald P. Overton

2007-01-01

Nuttall oak (Quercus nuttallii Palm.) seedlings raised at state nurseries in Mississippi, Louisiana, and Arkansas were morphologically different in height, root collar diameter, fresh mass, number of first-order lateral roots, root volume, and height-to-root collar diameter ratio. When outplanted on afforestation sites in the Lower Mississippi...

Field performance of Nuttall oak on former agricultural fields: Initial effects of nursery source and competition control

Treesearch

Emile S. Gardiner; K. Francis Salifu; Douglass F. Jacobs; George Hernandez; Ronald P. Overton

2007-01-01

Nuttall oak (Quercus nuttallii Palm.) seedlings raised at state nurseries in Mississippi, Louisiana, and Arkansas were morphologically different in height, root collar diameter, fresh mass, number of first-order lateral roots, root volume, and height-to-root collar diameter ratio. When outplanted on afforestation sites in the Lower Mississippi...

Spectropolarimetric Observations of a Small Active Region with IBIS

NASA Astrophysics Data System (ADS)

Tarr, Lucas; Judge, Philip G.

2014-06-01

We have used the Interferometric BI--dimensional Spectrograph (IBIS) instrument at the Dunn Solar Telescope to measure the polarimetric Stokes IQUV signals for the small active region, NOAA 11304. We used three lines generally corresponding to three atmospheric heights ranging from the photosphere to low corona: Fe I 6302Å, NaI 5896Å, and CaII 8542Å. Each set of profiles has been inverted using the NICOLE code to determine the vector magnetic field at the three heights throughout the field of view, or the line--of--sight field, as allowed by the level of polarization signal. Comparisons are made between the magnetic and thermal structures with the goal of constraining chromospheric models with the information obtained at multiple heights.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suárez, D. Orozco; Ramos, A. Asensio; Bueno, J. Trujillo, E-mail: dorozco@iac.es

Proving the magnetic configuration of solar spicules has hitherto been difficult due to the lack of spatial resolution and image stability during off-limb ground-based observations. We report spectropolarimetric observations of spicules taken in the He i 1083 nm spectral region with the Tenerife Infrared Polarimeter II at the German Vacuum Tower Telescope of the Observatorio del Teide (Tenerife, Canary Islands, Spain). The data provide the variation with geometrical height of the Stokes I, Q, U, and V profiles, whose encoded information allows the determination of the magnetic field vector by means of the HAZEL inversion code. The inferred results showmore » that the average magnetic field strength at the base of solar spicules is about 80 gauss, and then it decreases rapidly with height to about 30 gauss at a height of 3000 km above the visible solar surface. Moreover, the magnetic field vector is close to vertical at the base of the chromosphere and has mid-inclinations (about 50°) above 2 Mm height.« less

A study of acoustic halos in active region NOAA 11330 using multi-height SDO observations

NASA Astrophysics Data System (ADS)

Tripathy, S. C.; Jain, K.; Kholikov, S.; Hill, F.; Rajaguru, S. P.; Cally, P. S.

2018-01-01

We analyze data from the Helioseismic Magnetic Imager (HMI) and the Atmospheric Imaging Assembly (AIA) instruments on board the Solar Dynamics Observatory (SDO) to characterize the spatio-temporal acoustic power distribution in active regions as a function of the height in the solar atmosphere. For this, we use Doppler velocity and continuum intensity observed using the magnetically sensitive line at 6173 Å as well as intensity at 1600 Å and 1700 Å. We focus on the power enhancements seen around AR 11330 as a function of wave frequency, magnetic field strength, field inclination and observation height. We find that acoustic halos occur above the acoustic cutoff frequency and extends up to 10 mHz in HMI Doppler and AIA 1700 Å observations. Halos are also found to be strong functions of magnetic field and their inclination angle. We further calculate and examine the spatially averaged relative phases and cross-coherence spectra and find different wave characteristics at different heights.

47 CFR 73.314 - Field strength measurements.

Code of Federal Regulations, 2011 CFR

2011-10-01

..., such as topography, height and types of vegetation, buildings, obstacles, weather, and other local... the approximate time of measurement, weather, topography, overhead wiring, heights and types of...

47 CFR 73.314 - Field strength measurements.

Code of Federal Regulations, 2014 CFR

2014-10-01

..., such as topography, height and types of vegetation, buildings, obstacles, weather, and other local... the approximate time of measurement, weather, topography, overhead wiring, heights and types of...

47 CFR 73.314 - Field strength measurements.

Code of Federal Regulations, 2012 CFR

2012-10-01

..., such as topography, height and types of vegetation, buildings, obstacles, weather, and other local... the approximate time of measurement, weather, topography, overhead wiring, heights and types of...

47 CFR 73.314 - Field strength measurements.

Code of Federal Regulations, 2013 CFR

2013-10-01

..., such as topography, height and types of vegetation, buildings, obstacles, weather, and other local... the approximate time of measurement, weather, topography, overhead wiring, heights and types of...

Morphologic Quality of DSMs Based on Optical and Radar Space Imagery

NASA Astrophysics Data System (ADS)

Sefercik, U. G.; Bayik, C.; Karakis, S.; Jacobsen, K.

2011-09-01

Digital Surface Models (DSMs) are representing the visible surface of the earth by the height corresponding to its X-, Y-location and height value Z. The quality of a DSM can be described by the accuracy and the morphologic details. Both depend upon the used input information, the used technique and the roughness of the terrain. The influence of the topographic details to the DSM quality is shown for the test fields Istanbul and Zonguldak. Zonguldak has a rough mountainous character with heights from sea level up to 1640m, while Istanbul is dominated by rolling hills going up to an elevation of 435m. DSMs from SPOT-5, the SRTM C-band height models and ASTER GDEM have been investigated. The DSMs have been verified with height models from large scale aerial photos being more accurate and including morphologic details. It was necessary to determine and respect shifts of the height models caused by datum problems and orientation of the height models. The DSM quality is analyzed depending upon the terrain inclination. The DSM quality differs for both test fields. The morphologic quality depends upon the point spacing of the analyzed DSMs and the terrain characteristics.

Impact of source height on the characteristic of U-shaped channel tunnel field-effect transistor

NASA Astrophysics Data System (ADS)

Yang, Zhaonian; Zhang, Yue; Yang, Yuan; Yu, Ningmei

2017-11-01

Tunnel field-effect transistor (TFET) is very attractive in replacing a MOSFET, particularly for low-power nanoelectronic circuits. The U-shaped channel TFET (U-TFET) was proposed to improve the drain-source current with a reduced footprint. In this work, the impact of the source height (HS) on the characteristic of the U-shaped channel tunnel field-effect transistor (U-TFET) is investigated by using TCAD simulation. It is found that with a fixed gate height (HG) the drain-source current has a negative correlation with HS. This is because when the gate region is deeper than the source region, the electric field near the corner of the tunneling junction can be enhanced and the tunneling rate is increased. When HS becomes very thin, the drain-source current is limited by the source region volume. The U-TFET with an n+ pocket is also studied and the same trend is observed.

Secular trend: morphology and performance.

PubMed

Sedeaud, Adrien; Marc, Andy; Schipman, Julien; Schaal, Karine; Danial, Mario; Guillaume, Marion; Berthelot, Geoffroy; Toussaint, Jean-François

2014-01-01

In a context of morphological expansion of the general population, how do athletes follow such a pattern of anthropometric growth? Is there any relation to performance? Biometric data including mass, height, body mass index (BMI) and age were collected for 50,376 American athletes representing 249,336 annual performers playing in professional baseball, football, ice hockey and basketball. Distributions by mass in National Football League (NFL) players are described by periods. Field goals have been studied in relation to players' height in the National Basketball Association (NBA). Between 1871 and 2011, athletes from the four sports have increased significantly in mass, height and BMI, following a multi-exponential function series. Consequently, biometric differences between athletes and the general population are increasing gradually. Changes in the mass distribution within the NFL show the emergence of a biometrical specificity in relation to the field position. At the professional level, performance remains structured around precise biometric values. In the NBA, a height-attractor at 201.3 ± 6.3 cm for the best scorers is invariant, regardless of the level of play. These results suggest that laws of growth and biometrics drive high-level sport and organise performance around the specific constraint of each field position. Discrepancies between some mass and height developments question the (disproportionate) large mass increase (relative to the height increase) during the 1980s and 1990s.

Mapping vegetation heights in China using slope correction ICESat data, SRTM, MODIS-derived and climate data

NASA Astrophysics Data System (ADS)

Huang, Huabing; Liu, Caixia; Wang, Xiaoyi; Biging, Gregory S.; Chen, Yanlei; Yang, Jun; Gong, Peng

2017-07-01

Vegetation height is an important parameter for biomass assessment and vegetation classification. However, vegetation height data over large areas are difficult to obtain. The existing vegetation height data derived from the Ice, Cloud and land Elevation Satellite (ICESat) data only include laser footprints in relatively flat forest regions (<5°). Thus, a large portion of ICESat data over sloping areas has not been used. In this study, we used a new slope correction method to improve the accuracy of estimates of vegetation heights for regions where slopes fall between 5° and 15°. The new method enabled us to use more than 20% additional laser data compared with the existing vegetation height data which only uses ICESat data in relatively flat areas (slope < 5°) in China. With the vegetation height data extracted from ICESat footprints and ancillary data including Moderate Resolution Imaging Spectroradiometer (MODIS) derived data (canopy cover, reflectances and leaf area index), climate data, and topographic data, we developed a wall to wall vegetation height map of China using the Random Forest algorithm. We used the data from 416 field measurements to validate the new vegetation height product. The coefficient of determination (R2) and RMSE of the new vegetation height product were 0.89 and 4.73 m respectively. The accuracy of the product is significantly better than that of the two existing global forest height products produced by Lefsky (2010) and Simard et al. (2011), when compared with the data from 227 field measurements in our study area. The new vegetation height data demonstrated clear distinctions among forest, shrub and grassland, which is promising for improving the classification of vegetation and above-ground forest biomass assessment in China.

Statistical models for sediment/detritus and dissolved absorption coefficients in coastal waters of the northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Green, Rebecca E.; Gould, Richard W., Jr.; Ko, Dong S.

2008-06-01

We developed statistically-based, optical models to estimate tripton (sediment/detrital) and colored dissolved organic matter (CDOM) absorption coefficients ( a sd, a g) from physical hydrographic and atmospheric properties. The models were developed for northern Gulf of Mexico shelf waters using multi-year satellite and physical data. First, empirical algorithms for satellite-derived a sd and a g were developed, based on comparison with a large data set of cruise measurements from northern Gulf shelf waters; these algorithms were then applied to a time series of ocean color (SeaWiFS) satellite imagery for 2002-2005. Unique seasonal timing was observed in satellite-derived optical properties, with a sd peaking most often in fall/winter on the shelf, in contrast to summertime peaks observed in a g. Next, the satellite-derived values were coupled with the physical data to form multiple regression models. A suite of physical forcing variables were tested for inclusion in the models: discharge from the Mississippi River and Mobile Bay, Alabama; gridded fields for winds, precipitation, solar radiation, sea surface temperature and height (SST, SSH); and modeled surface salinity and currents (Navy Coastal Ocean Model, NCOM). For satellite-derived a sd and a g time series (2002-2004), correlation and stepwise regression analyses revealed the most important physical forcing variables. Over our region of interest, the best predictors of tripton absorption were wind speed, river discharge, and SST, whereas dissolved absorption was best predicted by east-west wind speed, river discharge, and river discharge lagged by 1 month. These results suggest the importance of vertical mixing (as a function of winds and thermal stratification) in controlling a sd distribution patterns over large regions of the shelf, in comparison to advection as the most important control on a g. The multiple linear regression models for estimating a sd and a g were applied on a pixel-by-pixel basis and results were compared to monthly SeaWiFS composite imagery. The models performed well in resolving seasonal and interannual optical variability in model development years (2002-2004) (mean error of 32% for a sd and 29% for a g) and in predicting shelfwide optical patterns in a year independent of model development (2005; mean error of 41% for a sd and 46% for a g). The models provide insight into the dominant processes controlling optical distributions in this region, and they can be used to predict the optical fields from the physical properties at monthly timescales.

Systematic Assessment of the Impact of User Roles on Network Flow Patterns

DTIC Science & Technology

2017-09-01

Protocol SNMP Simple Network Management Protocol SQL Structured Query Language SSH Secure Shell SYN TCP Sync Flag SVDD Support Vector Data Description SVM...and evaluating users based on roles provide the best approach for defining normal digital behaviors? People are individuals, with different interests...activities on the network. We evaluate the assumption that users sharing similar roles exhibit similar network behaviors, and contrast the level of similarity

Hardware Assisted Stealthy Diversity (CHECKMATE)

DTIC Science & Technology

2013-09-01

applicable across multiple architectures. Figure 29 shows an example an attack against an interpreted environment with a Java executable. CHECKMATE can...Architectures ARM PPCx86 Java VM Java VMJava VM Java Executable Attack APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED 33 a user executes “/usr/bin/wget...Server 1 - Administration Server 2 – Database ( mySQL ) Server 3 – Web server (Mongoose) Server 4 – File server (SSH) Server 5 – Email server

Setting Up Git Software Tool on Linux | High-Performance Computing | NREL

Science.gov Websites

system. Before you can get started using the github.nrel.gov git repos, you'll have to do some basic shell (SSH) keys created on those systems. If this is the case, for more information, see using the git Steps - Using a Remote Git Repository Now you have all the basic configuration for using git with a

Identification of genes differentially expressed by calorie restriction in the rotifer (Brachionus plicatilis).

PubMed

Oo, Aung Kyaw Swar; Kaneko, Gen; Hirayama, Makoto; Kinoshita, Shigeharu; Watabe, Shugo

2010-01-01

A monogonont rotifer Brachionus plicatilis has been widely used as a model organism for physiological, ecological studies and for ecotoxicology. Because of the availability of parthenogenetic mode of reproduction as well as its versatility to be used as live food in aquaculture, the population dynamic studies using the rotifer have become more important and acquired the priority over those using other species. Although many studies have been conducted to identify environmental factors that influence rotifer populations, the molecular mechanisms involved still remain to be elucidated. In this study, gene(s) differentially expressed by calorie restriction in the rotifer was analyzed, where a calorie-restricted group was fed 3 h day(-1) and a well-fed group fed ad libitum. A subtracted cDNA library from the calorie-restricted rotifer was constructed using suppression subtractive hybridization (SSH). One hundred sixty-three expressed sequence tags (ESTs) were identified, which included 109 putative genes with a high identity to known genes in the publicly available database as well as 54 unknown ESTs. After assembling, a total of 38 different genes were obtained among 109 ESTs. Further validation of expression by semi-quantitative reverse transcription-PCR showed that 29 out of the 38 genes obtained by SSH were up regulated by calorie restriction.

Identification of genes differentially expressed in association with acquired cisplatin resistance

PubMed Central

Johnsson, A; Zeelenberg, I; Min, Y; Hilinski, J; Berry, C; Howell, S B; Los, G

2000-01-01

The goal of this study was to identify genes whose mRNA levels are differentially expressed in human cells with acquired cisplatin (cDDP) resistance. Using the parental UMSCC10b head and neck carcinoma cell line and the 5.9-fold cDDP-resistant subline, UMSCC10b/Pt-S15, two suppressive subtraction hybridization (SSH) cDNA libraries were prepared. One library represented mRNAs whose levels were increased in the cDDP resistant variant (the UP library), the other one represented mRNAs whose levels were decreased in the resistant cells (the DOWN library). Arrays constructed with inserts recovered from these libraries were hybridized with SSH products to identify truly differentially expressed elements. A total of 51 cDNA fragments present in the UP library and 16 in the DOWN library met the criteria established for differential expression. The sequences of 87% of these cDNA fragments were identified in Genbank. Among the mRNAs in the UP library that were frequently isolated and that showed high levels of differential expression were cytochrome oxidase I, ribosomal protein 28S, elongation factor 1α, α-enolase, stathmin, and HSP70. The approach taken in this study permitted identification of many genes never before linked to the cDDP-resistant phenotype. © 2000 Cancer Research Campaign PMID:10993653

Contributing opportunistic resources to the grid with HTCondor-CE-Bosco

NASA Astrophysics Data System (ADS)

Weitzel, Derek; Bockelman, Brian

2017-10-01

The HTCondor-CE [1] is the primary Compute Element (CE) software for the Open Science Grid. While it offers many advantages for large sites, for smaller, WLCG Tier-3 sites or opportunistic clusters, it can be a difficult task to install, configure, and maintain the HTCondor-CE. Installing a CE typically involves understanding several pieces of software, installing hundreds of packages on a dedicated node, updating several configuration files, and implementing grid authentication mechanisms. On the other hand, accessing remote clusters from personal computers has been dramatically improved with Bosco: site admins only need to setup SSH public key authentication and appropriate accounts on a login host. In this paper, we take a new approach with the HTCondor-CE-Bosco, a CE which combines the flexibility and reliability of the HTCondor-CE with the easy-to-install Bosco. The administrators of the opportunistic resource are not required to install any software: only SSH access and a user account are required from the host site. The OSG can then run the grid-specific portions from a central location. This provides a new, more centralized, model for running grid services, which complements the traditional distributed model. We will show the architecture of a HTCondor-CE-Bosco enabled site, as well as feedback from multiple sites that have deployed it.

Genes up-regulated during red coloration in UV-B irradiated lettuce leaves.

PubMed

Park, Jong-Sug; Choung, Myoung-Gun; Kim, Jung-Bong; Hahn, Bum-Soo; Kim, Jong-Bum; Bae, Shin-Chul; Roh, Kyung-Hee; Kim, Yong-Hwan; Cheon, Choong-Ill; Sung, Mi-Kyung; Cho, Kang-Jin

2007-04-01

Molecular analysis of gene expression differences between green and red lettuce leaves was performed using the SSH method. BlastX comparisons of subtractive expressed sequence tags (ESTs) indicated that 7.6% of clones encoded enzymes involved in secondary metabolism. Such clones had a particularly high abundance of flavonoid-metabolism proteins (6.5%). Following SSH, 566 clones were rescreened for differential gene expression using dot-blot hybridization. Of these, 53 were found to overexpressed during red coloration. The up-regulated expression of six genes was confirmed by Northern blot analyses. The expression of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), and dihydroflavonol 4-reductase (DFR) genes showed a positive correlation with anthocyanin accumulation in UV-B-irradiated lettuce leaves; flavonoid 3',5'-hydroxylase (F3',5'H) and anthocyanidin synthase (ANS) were expressed continuously in both samples. These results indicated that the genes CHS, F3H, and DFR coincided with increases in anthocyanin accumulation during the red coloration of lettuce leaves. This study show a relationship between red coloration and the expression of up-regulated genes in lettuce. The subtractive cDNA library and EST database described in this study represent a valuable resource for further research for secondary metabolism in the vegetable crops.

Rain Splash Dispersal of Gibberella zeae Within Wheat Canopies in Ohio.

PubMed

Paul, P A; El-Allaf, S M; Lipps, P E; Madden, L V

2004-12-01

ABSTRACT Rain splash dispersal of Gibberella zeae, causal agent of Fusarium head blight of wheat, was investigated in field studies in Ohio between 2001 and 2003. Samplers placed at 0, 30, and 100 cm above the soil surface were used to collect rain splash in wheat fields with maize residue on the surface and fields with G. zeae-infested maize kernels. Rain splash was collected during separate rain episodes throughout the wheat-growing seasons. Aliquots of splashed rain were transferred to petri dishes containing Komada's selective medium, and G. zeae was identified based on colony and spore morphology. Dispersed spores were measured in CFU/ml. Intensity of splashed rain was highest at 100 cm and ranged from 0.2 to 10.2 mm h(-1), depending on incident rain intensity and sampler height. Spores were recovered from splash samples at all heights in both locations for all sampled rain events. Both macroconidia and ascospores were found based on microscopic examination of random samples of splashed rain. Spore density and spore flux density per rain episode ranged from 0.4 to 40.9 CFU cm(-2) and 0.4 to 84.8 CFU cm(-2) h(-1), respectively. Spore flux density was higher in fields with G. zeae-infested maize kernels than in fields with maize debris, and generally was higher at 0 and 30 cm than at 100 cm at both locations. However, on average, spore flux density was only 30% lower at 100 cm (height of wheat spikes) than at the other heights. The log of spore flux density was linearly related to the log of splashed rain intensity and the log of incident rain intensity. The regression slopes were not significantly affected by year, location, height, and their interactions, but the intercepts were significantly affected by both sampler height and location. Thus, our results show that spores of G. zeae were consistently splash dispersed to spike heights within wheat canopies, and splashed rain intensity and spore flux density could be predicted based on incident rain intensity in order to estimate inoculum dispersal within the wheat canopy.

Predicting the Mobility and Burial of Underwater Unexploded Ordnance (UXO) using the UXO Mobility Model. Field Test Report (PMRF Barking Sands, Kauai, Hawaii)

DTIC Science & Technology

2008-05-20

of the demonstration; yellow stars indicate the inshore and offshore fields. ................. 39 Figure 19. Wave height (upper) and current...demonstration; yellow stars indicate the inshore and offshore fields. 40 Figure 19. Wave height (upper) and current magnitude (lower) measured...State Park to Barking Sands, are composed of material eroded from the Kokee Highlands, remnant of a shield volcano that is dissected on its western side

SU-E-T-399: Evaluation of Selection Criteria for Computational Human Phantoms for Use in Out-Of-Field Organ Dosimetry for Radiotherapy Patients

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pelletier, C; Jung, J; Lee, C

2015-06-15

Purpose: To quantify the dosimetric uncertainty due to organ position errors when using height and weight as phantom selection criteria in the UF/NCI Hybrid Phantom Library for the purpose of out-of-field organ dose reconstruction. Methods: Four diagnostic patient CT images were used to create 7-field IMRT plans. For each patient, dose to the liver, right lung, and left lung were calculated using the XVMC Monte Carlo code. These doses were taken to be the ground truth. For each patient, the phantom with the most closely matching height and weight was selected from the body size dependent phantom library. The patientmore » plans were then transferred to the computational phantoms and organ doses were recalculated. Each plan was also run on 4 additional phantoms with reference heights and or weights. Maximum and mean doses for the three organs were computed, and the DVHs were extracted and compared. One sample t-tests were performed to compare the accuracy of the height and weight matched phantoms against the additional phantoms in regards to both maximum and mean dose. Results: For one of the patients, the height and weight matched phantom yielded the most accurate results across all three organs for both maximum and mean doses. For two additional patients, the matched phantom yielded the best match for one organ only. In 13 of the 24 cases, the matched phantom yielded better results than the average of the other four phantoms, though the results were only statistically significant at the .05 level for three cases. Conclusion: Using height and weight matched phantoms does yield better results in regards to out-of-field dosimetry than using average phantoms. Height and weight appear to be moderately good selection criteria, though this selection criteria failed to yield any better results for one patient.« less

Terrestrial 3D laser scanning to track the increase in canopy height of both monocot and dicot crop species under field conditions.

PubMed

Friedli, Michael; Kirchgessner, Norbert; Grieder, Christoph; Liebisch, Frank; Mannale, Michael; Walter, Achim

2016-01-01

Plant growth is a good indicator of crop performance and can be measured by different methods and on different spatial and temporal scales. In this study, we measured the canopy height growth of maize (Zea mays), soybean (Glycine max) and wheat (Triticum aestivum) under field conditions by terrestrial laser scanning (TLS). We tested the hypotheses whether such measurements are capable to elucidate (1) differences in architecture that exist between genotypes; (2) genotypic differences between canopy height growth during the season and (3) short-term growth fluctuations (within 24 h), which could e.g. indicate responses to rapidly fluctuating environmental conditions. The canopies were scanned with a commercially available 3D laser scanner and canopy height growth over time was analyzed with a novel and simple approach using spherical targets with fixed positions during the whole season. This way, a high precision of the measurement was obtained allowing for comparison of canopy parameters (e.g. canopy height growth) at subsequent time points. Three filtering approaches for canopy height calculation from TLS were evaluated and the most suitable approach was used for the subsequent analyses. For wheat, high coefficients of determination (R(2)) of the linear regression between manually measured and TLS-derived canopy height were achieved. The temporal resolution that can be achieved with our approach depends on the scanned crop. For maize, a temporal resolution of several hours can be achieved, whereas soybean is ideally scanned only once per day, after leaves have reached their most horizontal orientation. Additionally, we could show for maize that plant architectural traits are potentially detectable with our method. The TLS approach presented here allows for measuring canopy height growth of different crops under field conditions with a high temporal resolution, depending on crop species. This method will enable advances in automated phenotyping for breeding and precision agriculture applications. In future studies, the TLS method can be readily applied to detect the effects of plant stresses such as drought, limited nutrient availability or compacted soil on different genotypes or on spatial variance in fields.

Determination of ionospheric electron content from the Faraday rotation of geostationary satellite signals.

NASA Technical Reports Server (NTRS)

Titheridge, J. E.

1972-01-01

Observation that calculations of the integrated electron content up to the height of the satellite, using a wide range of model ionospheres (with a peak at 300 km) could be up to four times the value deduced from Faraday rotation measurements. However, using a fixed mean field height of 400 km, the observed Faraday rotation gives the electron content up to a height h sub F of 2000 km with an accuracy of plus or minus 3%. For observations at different magnetic and geographic latitudes, and geostationary satellites at different longitudes, the optimum value of h sub F varies by only plus or minus 200 km. Nighttime increases in the height of the ionosphere have little effect on h sub F, but increase the mean field height to about 470 km. Using a fixed value of 420 km, with h sub F = 2000 km, gives an accuracy of plus or minus 5% under most conditions.

47 CFR 80.767 - Propagation curve.

Code of Federal Regulations, 2010 CFR

2010-10-01

... land (smooth earth); transmitting antena heights of 4,800, 3,200, 1,600, 800, 400, 200, and 100 feet; based on a receiving antenna height of 9 meters (30 feet), for the 156-162 MHz band. The use of this is... antenna heights lower than 9 meters (30 feet), assume that the field strength is the same as at 9 meters...

3D Participatory Sensing with Low-Cost Mobile Devices for Crop Height Assessment--A Comparison with Terrestrial Laser Scanning Data.

PubMed

Marx, Sabrina; Hämmerle, Martin; Klonner, Carolin; Höfle, Bernhard

2016-01-01

The integration of local agricultural knowledge deepens the understanding of complex phenomena such as the association between climate variability, crop yields and undernutrition. Participatory Sensing (PS) is a concept which enables laymen to easily gather geodata with standard low-cost mobile devices, offering new and efficient opportunities for agricultural monitoring. This study presents a methodological approach for crop height assessment based on PS. In-field crop height variations of a maize field in Heidelberg, Germany, are gathered with smartphones and handheld GPS devices by 19 participants. The comparison of crop height values measured by the participants to reference data based on terrestrial laser scanning (TLS) results in R2 = 0.63 for the handheld GPS devices and R2 = 0.24 for the smartphone-based approach. RMSE for the comparison between crop height models (CHM) derived from PS and TLS data is 10.45 cm (GPS devices) and 14.69 cm (smartphones). Furthermore, the results indicate that incorporating participants' cognitive abilities in the data collection process potentially improves the quality data captured with the PS approach. The proposed PS methods serve as a fundament to collect agricultural parameters on field-level by incorporating local people. Combined with other methods such as remote sensing, PS opens new perspectives to support agricultural development.

A stingless bee can use visual odometry to estimate both height and distance.

PubMed

Eckles, M A; Roubik, D W; Nieh, J C

2012-09-15

Bees move and forage within three dimensions and rely heavily on vision for navigation. The use of vision-based odometry has been studied extensively in horizontal distance measurement, but not vertical distance measurement. The honey bee Apis mellifera and the stingless bee Melipona seminigra measure distance visually using optic flow-movement of images as they pass across the retina. The honey bees gauge height using image motion in the ventral visual field. The stingless bees forage at different tropical forest canopy levels, ranging up to 40 m at our site. Thus, estimating height would be advantageous. We provide the first evidence that the stingless bee Melipona panamica utilizes optic flow information to gauge not only distance traveled but also height above ground, by processing information primarily from the lateral visual field. After training bees to forage at a set height in a vertical tunnel lined with black and white stripes, we observed foragers that explored a new tunnel with no feeder. In a new tunnel, bees searched at the same height they were trained to. In a narrower tunnel, bees experienced more image motion and significantly lowered their search height. In a wider tunnel, bees experienced less image motion and searched at significantly greater heights. In a tunnel without optic cues, bees were disoriented and searched at random heights. A horizontal tunnel testing these variables similarly affected foraging, but bees exhibited less precision (greater variance in search positions). Accurately gauging flight height above ground may be crucial for this species and others that compete for resources located at heights ranging from ground level to the high tropical forest canopies.

Two Types of Long-duration Quasi-static Evolution of Solar Filaments

NASA Astrophysics Data System (ADS)

Xing, C.; Li, H. C.; Jiang, B.; Cheng, X.; Ding, M. D.

2018-04-01

In this Letter, we investigate the long-duration quasi-static evolution of 12 pre-eruptive filaments (four active region (AR) and eight quiescent filaments), mainly focusing on the evolution of the filament height in 3D and the decay index of the background magnetic field. The filament height in 3D is derived through two-perspective observations of Solar Dynamics Observatory (SDO) and Solar TErrestrial RElations Observatory (STEREO). The coronal magnetic field is reconstructed using the potential field source surface model. A new finding is that the filaments we studied show two types of long-duration evolution: one type comprises a long-duration static phase and a short, slow rise phase with a duration of less than 12 hr and a speed of 0.1–0.7 km s‑1, while the other one only presents a slow rise phase but with an extremely long duration of more than 60 hr and a smaller speed of 0.01–0.2 km s‑1. At the moment approaching the eruption, the decay index of the background magnetic field at the filament height is similar for both AR and quiescent filaments. The average value and upper limit are ∼0.9 and ∼1.4, close to the critical index of torus instability. Moreover, the filament height and background magnetic field strength are also found to be linearly and exponentially related with the filament length, respectively.

Automatic analysis of stereoscopic satellite image pairs for determination of cloud-top height and structure

NASA Technical Reports Server (NTRS)

Hasler, A. F.; Strong, J.; Woodward, R. H.; Pierce, H.

1991-01-01

Results are presented on an automatic stereo analysis of cloud-top heights from nearly simultaneous satellite image pairs from the GOES and NOAA satellites, using a massively parallel processor computer. Comparisons of computer-derived height fields and manually analyzed fields show that the automatic analysis technique shows promise for performing routine stereo analysis in a real-time environment, providing a useful forecasting tool by augmenting observational data sets of severe thunderstorms and hurricanes. Simulations using synthetic stereo data show that it is possible to automatically resolve small-scale features such as 4000-m-diam clouds to about 1500 m in the vertical.

Indirect Phase Height Measurements in Central and Eastern Europe for Monitoring D Region Plasma

NASA Technical Reports Server (NTRS)

Cossart, G. V.; Pakhomov, S. V.

1984-01-01

Low-frequency propagation experiments for the investigation of the lower part of the ionospheric D region were at first used by BRACEWELL et al. (1951) in the early fifties. Among these was the method of indirect phase height measurements for continuous monitoring of the lower ionosphere. It is based upon field strength measurements of commercial radio transmitters in the frequency range between 50 and 200 kHz at distances from 500 to 1500 km. The field strength records show characteristic diurnal variations with maxima and minima, produced by interference between the ground wave and the ionospherically reflected sky wave, the phase difference between varies in correspondence to the diurnal variation of the reflection height. In order to check the validity of interpretations of indirect phase height data, comparisons were made with simultaneous rocket soundings. Results are summarized.

On the Factors Determining the Eruptive Character of Solar Flares

NASA Astrophysics Data System (ADS)

Baumgartner, Christian; Thalmann, Julia K.; Veronig, Astrid M.

2018-02-01

We investigated how the magnetic field in solar active regions (ARs) controls flare activity, i.e., whether a confined or eruptive flare occurs. We analyzed 44 flares of GOES class M5.0 and larger that occurred during 2011–2015. We used 3D potential magnetic field models to study their location (using the flare distance from the flux-weighted AR center d FC) and the strength of the magnetic field in the corona above (via decay index n and flux ratio). We also present a first systematic study of the orientation of the coronal magnetic field, using the orientation φ of the flare-relevant polarity inversion line as a measure. We analyzed all quantities with respect to the size of the underlying dipole field, characterized by the distance between the opposite-polarity centers, d PC. Flares originating from underneath the AR dipole (d FC/d PC < 0.5) tend to be eruptive if launched from compact ARs (d PC ≤ 60 Mm) and confined if launched from extended ARs. Flares ejected from the periphery of ARs (d FC/d PC > 0.5) are predominantly eruptive. In confined events, the flare-relevant field adjusts its orientation quickly to that of the underlying dipole with height (Δφ ≳ 40° until the apex of the dipole field), in contrast to eruptive events where it changes more slowly with height. The critical height for torus instability, h crit = h(n = 1.5), discriminates best between confined (h crit ≳ 40 Mm) and eruptive flares (h crit ≲ 40 Mm). It discriminates better than Δφ, implying that the decay of the confining field plays a stronger role than its orientation at different heights.

Interception of spray drift by border structures. Part 1: wind tunnel experiments.

PubMed

De Schampheleire, M; Nuyttens, D; Dekeyser, D; Verboven, P; Cornelis, W; Gabriels, D; Spanoghe, P

2008-01-01

This research investigated the drift-intercepting potential of structures surrounding the field borders, like artificial screens and crops, which are not yet a part of the drift mitigation measures for field crop sprayers in Belgium. Drift-interception experiments were performed in the wind tunnel of the International Centre for Eremology (Ghent University, Belgium) with various interception structures: Artificial screens with heights of 0.5, 0.75 and 1 m and screen open areas of 16, 36 and 63%; a row of plastic Christmas trees with heights of 0.5 and 0.75 m; and a potato canopy. The interception structure was positioned at 1 m from the field border. From the results it was found that type of border structure has a pronounced effect on the drift interception, while the height of the border structure had no significant effect.

An Analysis of the Computer Security Ramifications of Weakened Asymmetric Cryptographic Algorithms

DTIC Science & Technology

2012-06-01

OpenVPN (Yonan). TLS (and by extension SSL) obviously rely on encryption to provide the confidentiality, integrity and authentication services it...Secure Shell (SSH) Transport Layer Protocol.” IETF, Jan. 2006. <tools.ietf.org/html/rfc4253> Yonan, James, and Mattock. " OpenVPN ." SourceForge...11 May 2012. <http://sourceforge.net/projects/ openvpn /> 92 REPORT DOCUMENTATION PAGE Form Approved OMB No. 074-0188 The public reporting

Dynamic Policy Evaluation for Containing Network Attacks (DEFCN)

DTIC Science & Technology

2005-03-01

API reads policy information from the target users ".ssh" directory and applies those policies to determine whether remote login is allowed to a...types of events that can be controlled by the threshold detectors and reported by the GAA-API include the number of failed login attempts within a given...other uses of the system. Emerald architecture [2] includes a data- collection module integrated with Apache Web server. The module extracts the request

Methods for monitoring multiple gene expression

DOEpatents

Berka, Randy; Bachkirova, Elena; Rey, Michael

2013-10-01

The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

System Connection via SSH Gateway | High-Performance Computing | NREL

Science.gov Websites

;@peregrine.hpc.nrel.gov First time logging in? If this is the first time you've logged in with your new account, you will password. You will be prompted to enter it a second time, then you will be logged off. Just reconnect with your HPC password at any time, you can simply use the passwd command. Remote Users If you're connecting

Trans-polyacetylene within the extended tight-binding picture and evidence for next-nearest neighbour hopping from the dispersion of interband transition edges

NASA Astrophysics Data System (ADS)

Drechsler, S. L.; Heiner, E.; Osipov, V. A.

1986-11-01

The influence of additional non-nearest neighbour hopping processes is investigated in a SSH-like model. The enhanced splitting of absorption peaks due to Π-Π ∗ interband transitions (deduced from new electron loss data of Fink and Leising /17/) can be explained by a reasonable value of the next-nearest neighbour hopping integral |t 2| ≈0.05 t 0.

Methods for monitoring multiple gene expression

DOEpatents

Berka, Randy [Davis, CA; Bachkirova, Elena [Davis, CA; Rey, Michael [Davis, CA

2012-05-01

The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

Methods for monitoring multiple gene expression

DOEpatents

Berka, Randy [Davis, CA; Bachkirova, Elena [Davis, CA; Rey, Michael [Davis, CA

2008-06-01

The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

A comparison of several techniques to assign heights to cloud tracers

NASA Technical Reports Server (NTRS)

Nieman, Steven J.; Schmetz, Johannes; Menzel, W. P.

1993-01-01

Experimental results are presented which suggest that the water-vapor technique of radiance measurement is a viable alternative to the CO2 technique for inferring the height of semitransparent cloud elements. Future environmental satellites will rely on H2O-derived cloud-height assignments in the wind-field determinations with the next operational geostationary satellite. On a given day, the heights from the H2O and CO2 approaches compare to within 60-110 hPa rms.

Study for Air Vehicles at High Speeds, Identifying the Potential Benefits to Transport Aircraft of a Continuously Variable Geometry Trailing-Edge Structure that can be Utilized for Aircraft Control, Trim, Load-Alleviation, and High Lift

DTIC Science & Technology

2011-08-01

Field Length is defined as the total distance from brake release to the point at which the aircraft clears a height of 35 ft. The clearance height is...height clearance. The AEFL comprises two parts, the ground roll from brake release to lift-off (GR) plus the distance from lift-off to 35 ft height

Anthropometric Sizing Systems for Army Women’s Field Clothing

DTIC Science & Technology

1981-03-01

panties and bra (not pictured). HEIGHTS ANKLE HEIGHT (68): the height of the level of minimum circumference of the ankle. AXILLA HEIGHT (4): vertical...Patterson Air Force Base, Ohio, 1959. (AD 130 917) 3O’Brien, R., M.A. Girshick and E.P. Hunt. Body Measurements of American Boys and Girls for...O’Brien, Ruth, Meyer A. Girshick and Eleanor P. Hunt. 1941. Body Measurements of American Boys and Girls for Garment and Pattern Construction. U.S. De

Hurricane Juliette

Atmospheric Science Data Center

2013-04-19

... right is the cloud-top height field derived using automated computer processing of the data from multiple MISR cameras. Relative height ... NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Science Mission Directorate, Washington, D.C. The Terra spacecraft is managed ...

A Comparison of Several Techniques to Assign Heights to Cloud Tracers.

NASA Astrophysics Data System (ADS)

Nieman, Steven J.; Schmetz, Johannes; Menzel, W. Paul

1993-09-01

Satellite-derived cloud-motion vector (CMV) production has been troubled by inaccurate height assignment of cloud tracers, especially in thin semitransparent clouds. This paper presents the results of an intercomparison of current operational height assignment techniques. Currently, heights are assigned by one of three techniques when the appropriate spectral radiance measurements are available. The infrared window (IRW) technique compares measured brightness temperatures to forecast temperature profiles and thus infers opaque cloud levels. In semitransparent or small subpixel clouds, the carbon dioxide (CO2) technique uses the ratio of radiances from different layers of the atmosphere to infer the correct cloud height. In the water vapor (H2O) technique, radiances influenced by upper-tropospheric moisture and IRW radiances are measured for several pixels viewing different cloud amounts, and their linear relationship is used to extrapolate the correct cloud height. The results presented in this paper suggest that the H2O technique is a viable alternative to the CO2 technique for inferring the heights of semitransparent cloud elements. This is important since future National Environmental Satellite, Data, and Information Service (NESDIS) operations will have to rely on H20-derived cloud-height assignments in the wind field determinations with the next operational geostationary satellite. On a given day, the heights from the two approaches compare to within 60 110 hPa rms; drier atmospheric conditions tend to reduce the effectiveness of the H2O technique. By inference one can conclude that the present height algorithms used operationally at NESDIS (with the C02 technique) and at the European Satellite Operations Center (ESOC) (with their version of the H20 technique) are providing similar results. Sample wind fields produced with the ESOC and NESDIS algorithms using Meteosat-4 data show good agreement.

Hilfiker retaining walls with full height cast-in-place panels

DOT National Transportation Integrated Search

1998-02-01

Construction of retaining walls utilizing full height panels introduces a degree of indeterminacy to the structure. The ability to effectively analyze the internal behavior of such systems, and limited field performance, qualifies them as appropriate...

Anomalous circulation in the Pacific sector of the Arctic Ocean in July-December 2008

NASA Astrophysics Data System (ADS)

Panteleev, G.; Francis, O. P.; Yaremchuk, M.; Zhang, J.; Kulakov, M.; Onat, Y.

2017-12-01

Variability of the mean summer-fall ocean state in the Pacific Sector of the Arctic Ocean (PSAO) is studied using a dynamically constrained synthesis (4Dvar) of historical in situ observations collected during 1972 to 2008. Specifically, the oceanic response to the cyclonic (1989-1996) and anticyclonic (1972-1978, 1997-2006) phases o f the Arctic Ocean Oscillation (AOO) is assessed for the purpose of quantitatively comparing the 2008 circulation pattern that followed the 2007 ice cover minimum.It is shown that the PSAO circulation during July-December of 2008 was characterized by a pronounced negative Sea Surface Height (SSH) anomaly along theEurasian shelf break, which caused a significant decline of the transport in the Atlantic Water (AW) inflow region into the PSAO and increased the sea level difference betweenthe Bering and Chukchi Seas. This anomaly could be one of the reasons for the observed amplification of the Bering Strait transport carrying fresh Pacific Waters into the PSAO. Largrangian analysis of the optimized solution suggests that the freshwater (FW) accumulation in the Beaufort Gyre has a negligible contribution from the East Siberian Sea and is likely caused by the enhanced FW export from the region north of the Canadian Archipelago/Greenland.The inverse modeling results are confirmed by validation against independent altimetry observations and in situ velocity data from NABOS moorings. It is also shown that presented results are in significantly better agreement with the data than the output of the PIOMAS model run utilized as a first guess solution for the 4dVar analysis.

Geodesic detection of Agulhas rings

NASA Astrophysics Data System (ADS)

Beron-Vera, F. J.; Wang, Y.; Olascoaga, M. J.; Goni, G. J.; Haller, G.

2012-12-01

Mesoscale oceanic eddies are routinely detected from instantaneous velocities. While simple to implement, this Eulerian approach gives frame-dependent results and often hides true material transport by eddies. Building on the recent geodesic theory of transport barriers, we develop an objective (i.e., frame-independent) method for accurately locating coherent Lagrangian eddies. These eddies act as compact water bodies, with boundaries showing no leakage or filamentation over long periods of time. Applying the algorithm to altimetry-derived velocities in the South Atlantic, we detect, for the first time, Agulhas rings that preserve their material coherence for several months, while eddy candidates yielded by other approaches tend to disperse or leak within weeks. These findings suggest that current Eulerian estimates of the Agulhas leakage need significant revision.Temporal evolution of fluid patches identified as eddies by different methods. First column: eddies extracted using geodesic eddy identification [1,2]. Second column: eddies identified from sea surface height (SSH) using the methodology of Chelton et al. [2] with U/c > 1. Third column: eddies identified as elliptic regions by the Okubo-Weiss (OW) criterion [e.g., 3]. Fourth column: eddies identified as mesoelliptic (ME) regions by Mezic et al.'s [4] criterion. References: [1] Beron-Vera et al. (2012). Geodesic eddy detection suggests reassessment of Agulhas leakage. Proc. Nat. Acad. Sci. USA, submitted. [2] Haller & Beron-Vera (2012). Geodesic theory of transport barriers in two-dimensional flows. Physica D, in press. [2] Chelton et al. (2011). Prog. Oceanog. 91, 167. [3] Chelton et al. (2007). Geophys. Res. Lett. 34, L5606. [4] Mezic et al. (2010). Science 330, 486.

On the dynamics of the Sri Lanka Dome in the Bay of Bengal

NASA Astrophysics Data System (ADS)

Burns, Jessica M.; Subrahmanyam, Bulusu; Murty, V. S. N.

2017-09-01

East of Sri Lanka, in the northern Indian Ocean, a cold dome, known as the Sri Lanka Dome (SLD), develops during southwest monsoon season (June-September). The SLD first forms around May, matures in July, and decays around September, in association with the strong cyclonic wind stress curl. In this study, the structure and dynamics of SLD in response to the climatic events such as the Indian Ocean Dipole (IOD) are examined. Our results reveal that these climatic events modulated the subsurface temperature variability in the thermocline at ˜100 m depth, whose signature was also evident in the satellite-derived sea surface height (SSH) anomaly in the SLD region. We find that the mechanisms for the formation of SLD are consistent with previous research, and there is year-to-year variability in the SLD dynamics. This study also reveals that the atmospheric parameters including vertical wind shear and midtropospheric relative humidity are high over the SLD region and adjacent southern Bay of Bengal and show an upward (increasing) trend over the decades. This has impacted the atmospheric parameters over the northern Bay of Bengal over the decades and as a consequence the total number of monsoon depressions (June-September) decreased over the decades from 1980 to 2015, as reported by the India Meteorological Department, New Delhi. Thus, the new insight emerged from this study is the variability in the cyclogenesis and the occurrence of total number of monsoon depressions over northern Bay of Bengal over the decades is much related to the SLD dynamics.

Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression

PubMed Central

2013-01-01

Background Caligid copepods, also called sea lice, are fish ectoparasites, some species of which cause significant problems in the mariculture of salmon, where the annual cost of infection is in excess of €300 million globally. At present, caligid control on farms is mainly achieved using medicinal treatments. However, the continued use of a restricted number of medicine actives potentially favours the development of drug resistance. Here, we report transcriptional changes in a laboratory strain of the caligid Lepeophtheirus salmonis (Krøyer, 1837) that is moderately (~7-fold) resistant to the avermectin compound emamectin benzoate (EMB), a component of the anti-salmon louse agent SLICE® (Merck Animal Health). Results Suppression subtractive hybridisation (SSH) was used to enrich transcripts differentially expressed between EMB-resistant (PT) and drug-susceptible (S) laboratory strains of L. salmonis. SSH libraries were subjected to 454 sequencing. Further L. salmonis transcript sequences were available as expressed sequence tags (EST) from GenBank. Contiguous sequences were generated from both SSH and EST sequences and annotated. Transcriptional responses in PT and S salmon lice were investigated using custom 15 K oligonucleotide microarrays designed using the above sequence resources. In the absence of EMB exposure, 359 targets differed in transcript abundance between the two strains, these genes being enriched for functions such as calcium ion binding, chitin metabolism and muscle structure. γ-aminobutyric acid (GABA)-gated chloride channel (GABA-Cl) and neuronal acetylcholine receptor (nAChR) subunits showed significantly lower transcript levels in PT lice compared to S lice. Using RT-qPCR, the decrease in mRNA levels was estimated at ~1.4-fold for GABA-Cl and ~2.8-fold for nAChR. Salmon lice from the PT strain showed few transcriptional responses following acute exposure (1 or 3 h) to 200 μg L-1 of EMB, a drug concentration tolerated by PT lice, but toxic for S lice. Conclusions Avermectins are believed to exert their toxicity to invertebrates through interaction with glutamate-gated and GABA-gated chloride channels. Further potential drug targets include other Cys-loop ion channels such as nAChR. The present study demonstrates decreased transcript abundances of GABA-Cl and nAChR subunits in EMB-resistant salmon lice, suggesting their involvement in avermectin toxicity in caligids. PMID:23773482

Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression.

PubMed

Carmichael, Stephen N; Bron, James E; Taggart, John B; Ireland, Jacqueline H; Bekaert, Michaël; Burgess, Stewart Tg; Skuce, Philip J; Nisbet, Alasdair J; Gharbi, Karim; Sturm, Armin

2013-06-18

Caligid copepods, also called sea lice, are fish ectoparasites, some species of which cause significant problems in the mariculture of salmon, where the annual cost of infection is in excess of €300 million globally. At present, caligid control on farms is mainly achieved using medicinal treatments. However, the continued use of a restricted number of medicine actives potentially favours the development of drug resistance. Here, we report transcriptional changes in a laboratory strain of the caligid Lepeophtheirus salmonis (Krøyer, 1837) that is moderately (~7-fold) resistant to the avermectin compound emamectin benzoate (EMB), a component of the anti-salmon louse agent SLICE® (Merck Animal Health). Suppression subtractive hybridisation (SSH) was used to enrich transcripts differentially expressed between EMB-resistant (PT) and drug-susceptible (S) laboratory strains of L. salmonis. SSH libraries were subjected to 454 sequencing. Further L. salmonis transcript sequences were available as expressed sequence tags (EST) from GenBank. Contiguous sequences were generated from both SSH and EST sequences and annotated. Transcriptional responses in PT and S salmon lice were investigated using custom 15 K oligonucleotide microarrays designed using the above sequence resources. In the absence of EMB exposure, 359 targets differed in transcript abundance between the two strains, these genes being enriched for functions such as calcium ion binding, chitin metabolism and muscle structure. γ-aminobutyric acid (GABA)-gated chloride channel (GABA-Cl) and neuronal acetylcholine receptor (nAChR) subunits showed significantly lower transcript levels in PT lice compared to S lice. Using RT-qPCR, the decrease in mRNA levels was estimated at ~1.4-fold for GABA-Cl and ~2.8-fold for nAChR. Salmon lice from the PT strain showed few transcriptional responses following acute exposure (1 or 3 h) to 200 μg L-1 of EMB, a drug concentration tolerated by PT lice, but toxic for S lice. Avermectins are believed to exert their toxicity to invertebrates through interaction with glutamate-gated and GABA-gated chloride channels. Further potential drug targets include other Cys-loop ion channels such as nAChR. The present study demonstrates decreased transcript abundances of GABA-Cl and nAChR subunits in EMB-resistant salmon lice, suggesting their involvement in avermectin toxicity in caligids.

Identification and Functional Annotation of Genes Differentially Expressed in the Reproductive Tissues of the Olive Tree (Olea europaea L.) through the Generation of Subtractive Libraries

PubMed Central

Zafra, Adoración; Carmona, Rosario; Traverso, José A.; Hancock, John T.; Goldman, Maria H. S.; Claros, M. Gonzalo; Hiscock, Simon J.; Alche, Juan D.

2017-01-01

The olive tree is a crop of high socio-economical importance in the Mediterranean area. Sexual reproduction in this plant is an essential process, which determines the yield. Successful fertilization is mainly favored and sometimes needed of the presence of pollen grains from a different cultivar as the olive seizes a self-incompatibility system allegedly determined of the sporophytic type. The purpose of the present study was to identify key gene products involved in the function of olive pollen and pistil, in order to help elucidate the events and signaling processes, which happen during the courtship, pollen grain germination, and fertilization in olive. The use of subtractive SSH libraries constructed using, on the one hand one specific stage of the pistil development with germinating pollen grains, and on the other hand mature pollen grains may help to reveal the specific transcripts involved in the cited events. Such libraries have also been created by subtracting vegetative mRNAs (from leaves), in order to identify reproductive sequences only. A variety of transcripts have been identified in the mature pollen grains and in the pistil at the receptive stage. Among them, those related to defense, transport and oxidative metabolism are highlighted mainly in the pistil libraries where transcripts related to stress, and response to biotic and abiotic stimulus have a prominent position. Extensive lists containing information as regard to the specific transcripts determined for each stage and tissue are provided, as well as functional classifications of these gene products. Such lists were faced up to two recent datasets obtained in olive after transcriptomic and genomic approaches. The sequences and the differential expression level of the SSH-transcripts identified here, highly matched the transcriptomic information. Moreover, the unique presence of a representative number of these transcripts has been validated by means of qPCR approaches. The construction of SSH libraries using pistil and pollen, considering the high interaction between male-female counterparts, allowed the identification of transcripts with important roles in stigma physiology. The functions of many of the transcripts obtained are intimately related, and most of them are of pivotal importance in defense, pollen-stigma interaction and signaling. PMID:28955364

ESD practice through global approach -7-year practices of developing science lessen modules and fostering integrated decision making ability-

NASA Astrophysics Data System (ADS)

Kajiyama, Kosei

2016-04-01

Hiroshima University High School (HUHS) has devised and carried out overseas exchange programs on ESD issues for 7 years. These programs have been carried out as a part of a government-aided project called SSH (Super Science High School) *1. To start with, we had cooperative study program with a school in Germany in 2009, and next year with a school in Korea, and then gradually have expanded the cooperative schools. Since 2013, we have worked with schools in four countries; Korea, Thailand, Czech and Germany. Science lesson modules here refers to an assembly of a set of lessons, newly developed and improved for the project. These modules characteristically require the students to make decisions by themselves on given problems. In the course of the decision making, students learn what kind of data or facts should be presented as evidence and how they can make their decisions known to others. Among several modules we have designed, the one introduced here deals with the use of solar energy, which we carried out with a school in Korea in 2014-2015. It also includes lessons of the fuel cells using energy from hydrogen gas generated by solar cells. It aims to develop global human resources through carefully planned activities. First, the students of both schools make mixed groups and conduct experiments in physics, chemistry or biology on a given problem related to solar energy. Then they discuss in groups using data obtained from the experiments and through the Internet as evidence. After the thorough discussion, each group gives a presentation on their decision. The analysis of the presentations and the questionnaire to the students revealed the following points: 1) Students have come to have multidimensional perspectives on the utilization of solar energy. 2) Students have come to combine the results of different experiments when making decisions. 3) Students have developed flexible attitudes toward other cultures. 4) Students have developed communication skills in English. *1 SSH: Since 2002, the Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT) have designated schools that focus their education on science and math as Super Science High Schools and our school has been designated as one of SSH schools since 2003

Within-field variability of plant and soil parameters

NASA Technical Reports Server (NTRS)

Ulaby, F. T. (Principal Investigator); Brisco, B.; Dobson, C.

1981-01-01

The variability of ground truth data collected for vegetation experiments was investigated. Two fields of wheat and one field of corn were sampled on two different dates. The variability of crop and soil parameters within a field, between two fields of the same type, and within a field over time were compared statistically. The number of samples from each test site required in order to be able to determine with confidence the mean and standard deviations for a given variable was determined. Eight samples were found to be adequate for plant height determinations, while twenty samples were required for plant moisture and soil moisture characterization. Eighteen samples were necessary for detecting within field variability over time and for between field variability for the same crop. The necessary sample sites vary according to the physiological growth stage of the crop and recent weather events that affect the moisture and/or height characteristics of the field in question.

Two-step solar filament eruptions

NASA Astrophysics Data System (ADS)

Filippov, B.

2018-04-01

Coronal mass ejections (CMEs) are closely related to eruptive filaments and usually are the continuation of the same eruptive process into the upper corona. There are failed filament eruptions when a filament decelerates and stops at some greater height in the corona. Sometimes the filament after several hours starts to rise again and develops into the successful eruption with a CME formation. We propose a simple model for the interpretation of such two-step eruptions in terms of equilibrium of a flux rope in a two-scale ambient magnetic field. The eruption is caused by a slow decrease of the holding magnetic field. The presence of two critical heights for the initiation of the flux-rope vertical instability allows the flux rope to stay after the first jump some time in a metastable equilibrium near the second critical height. If the decrease of the ambient field continues, the next eruption step follows.

A diameter distribution approach to estimating average stand dominant height in Appalachian hardwoods

Treesearch

John R. Brooks

2007-01-01

A technique for estimating stand average dominant height based solely on field inventory data is investigated. Using only 45.0919 percent of the largest trees per acre in the diameter distribution resulted in estimates of average dominant height that were within 4.3 feet of the actual value, when averaged over stands of very different structure and history. Cubic foot...

Estimates of site index and height growth for Douglas-fir in high-elevation forests of the Oregon-Washington Cascade Range: curves and tables for field application.

Treesearch

Donald J. DeMars; Francis R. Herman

1987-01-01

Estimation equations for height growth and site index were derived from stem-analysis data of Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco var. menziesii) in the highelevation forests of the Cascade Range in Oregon and Washington. Two sets of height-growth and site-index estimation curves and tables produced from...

Intercontinental height datum connection with GOCE and GPS-levelling data

NASA Astrophysics Data System (ADS)

Gruber, T.; Gerlach, C.; Haagmans, R.

2012-12-01

In this study an attempt is made to establish height system datum connections based upon a gravity field and steady-state ocean circulation explorer (GOCE) gravity field model and a set of global positioning system (GPS) and levelling data. The procedure applied in principle is straightforward. First local geoid heights are obtained point wise from GPS and levelling data. Then the mean of these geoid heights is computed for regions nominally referring to the same height datum. Subsequently, these local mean geoid heights are compared with a mean global geoid from GOCE for the same region. This way one can identify an offset of the local to the global geoid per region. This procedure is applied to a number of regions distributed worldwide. Results show that the vertical datum offset estimates strongly depend on the nature of the omission error, i.e. the signal not represented in the GOCE model. For a smooth gravity field the commission error of GOCE, the quality of the GPS and levelling data and the averaging control the accuracy of the vertical datum offset estimates. In case the omission error does not cancel out in the mean value computation, because of a sub-optimal point distribution or a characteristic behaviour of the omitted part of the geoid signal, one needs to estimate a correction for the omission error from other sources. For areas with dense and high quality ground observations the EGM2008 global model is a good choice to estimate the omission error correction in theses cases. Relative intercontinental height datum offsets are estimated by applying this procedure between the United State of America (USA), Australia and Germany. These are compared to historical values provided in the literature and computed with the same procedure. The results obtained in this study agree on a level of 10 cm to the historical results. The changes mainly can be attributed to the new global geoid information from GOCE, rather than to the ellipsoidal heights or the levelled heights. These historical levelling data are still in use in many countries. This conclusion is supported by other results on the validation of the GOCE models.

In Situ Height and Width Estimation of Sorghum Plants from 2.5d Infrared Images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baharav, Tavor; Bariya, Mohini; Zakhor, Avideh

Plant phenotyping, or the measurement of plant traits such as stem width and plant height, is a critical step in the development and evaluation of higher yield biofuel crops. Phenotyping allows biologists to quantitatively estimate the biomass of plant varieties and therefore their potential for biofuel production. Manual phenotyping is costly, time-consuming, and errorprone, requiring a person to walk through the fields measuring individual plants with a tape measure and notebook. In this work we describe an alternative system consisting of an autonomous robot equipped with two infrared cameras that travels through fields, collecting 2.5D image data of sorghum plants.more » We develop novel image processing based algorithms to estimate plant height and stem width from the image data. Our proposed method has the advantage of working in situ using images of plants from only one side. This allows phenotypic data to be collected nondestructively throughout the growing cycle, providing biologists with valuable information on crop growth patterns. Our approach first estimates plant heights and stem widths from individual frames. It then uses tracking algorithms to refine these estimates across frames and avoid double counting the same plant in multiple frames. The result is a histogram of stem widths and plant heights for each plot of a particular genetically engineered sorghum variety. In-field testing and comparison with human collected ground truth data demonstrates that our system achieves 13% average absolute error for stem width estimation and 15% average absolute error for plant height estimation.« less

In Situ Height and Width Estimation of Sorghum Plants from 2.5d Infrared Images

DOE PAGES

Baharav, Tavor; Bariya, Mohini; Zakhor, Avideh

2017-01-29

Plant phenotyping, or the measurement of plant traits such as stem width and plant height, is a critical step in the development and evaluation of higher yield biofuel crops. Phenotyping allows biologists to quantitatively estimate the biomass of plant varieties and therefore their potential for biofuel production. Manual phenotyping is costly, time-consuming, and errorprone, requiring a person to walk through the fields measuring individual plants with a tape measure and notebook. In this work we describe an alternative system consisting of an autonomous robot equipped with two infrared cameras that travels through fields, collecting 2.5D image data of sorghum plants.more » We develop novel image processing based algorithms to estimate plant height and stem width from the image data. Our proposed method has the advantage of working in situ using images of plants from only one side. This allows phenotypic data to be collected nondestructively throughout the growing cycle, providing biologists with valuable information on crop growth patterns. Our approach first estimates plant heights and stem widths from individual frames. It then uses tracking algorithms to refine these estimates across frames and avoid double counting the same plant in multiple frames. The result is a histogram of stem widths and plant heights for each plot of a particular genetically engineered sorghum variety. In-field testing and comparison with human collected ground truth data demonstrates that our system achieves 13% average absolute error for stem width estimation and 15% average absolute error for plant height estimation.« less

Volcanic plume height measured by seismic waves based on a mechanical model

USGS Publications Warehouse

Prejean, Stephanie G.; Brodsky, Emily E.

2011-01-01

In August 2008 an unmonitored, largely unstudied Aleutian volcano, Kasatochi, erupted catastrophically. Here we use seismic data to infer the height of large eruptive columns such as those of Kasatochi based on a combination of existing fluid and solid mechanical models. In so doing, we propose a connection between a common, observable, short-period seismic wave amplitude to the physics of an eruptive column. To construct a combined model, we estimate the mass ejection rate of material from the vent on the basis of the plume height, assuming that the height is controlled by thermal buoyancy for a continuous plume. Using the estimated mass ejection rate, we then derive the equivalent vertical force on the Earth through a momentum balance. Finally, we calculate the far-field surface waves resulting from the vertical force. The model performs well for recent eruptions of Kasatochi and Augustine volcanoes if v, the velocity of material exiting the vent, is 120-230 m s-1. The consistency between the seismically inferred and measured plume heights indicates that in these cases the far-field ~1 s seismic energy radiated by fluctuating flow in the volcanic jet during the eruption is a useful indicator of overall mass ejection rates. Thus, use of the model holds promise for characterizing eruptions and evaluating ash hazards to aircraft in real time on the basis of far-field short-period seismic data. This study emphasizes the need for better measurements of eruptive plume heights and a more detailed understanding of the full spectrum of seismic energy radiated coeruptively.

3D Participatory Sensing with Low-Cost Mobile Devices for Crop Height Assessment – A Comparison with Terrestrial Laser Scanning Data

PubMed Central

Marx, Sabrina; Hämmerle, Martin; Klonner, Carolin; Höfle, Bernhard

2016-01-01

The integration of local agricultural knowledge deepens the understanding of complex phenomena such as the association between climate variability, crop yields and undernutrition. Participatory Sensing (PS) is a concept which enables laymen to easily gather geodata with standard low-cost mobile devices, offering new and efficient opportunities for agricultural monitoring. This study presents a methodological approach for crop height assessment based on PS. In-field crop height variations of a maize field in Heidelberg, Germany, are gathered with smartphones and handheld GPS devices by 19 participants. The comparison of crop height values measured by the participants to reference data based on terrestrial laser scanning (TLS) results in R2 = 0.63 for the handheld GPS devices and R2 = 0.24 for the smartphone-based approach. RMSE for the comparison between crop height models (CHM) derived from PS and TLS data is 10.45 cm (GPS devices) and 14.69 cm (smartphones). Furthermore, the results indicate that incorporating participants’ cognitive abilities in the data collection process potentially improves the quality data captured with the PS approach. The proposed PS methods serve as a fundament to collect agricultural parameters on field-level by incorporating local people. Combined with other methods such as remote sensing, PS opens new perspectives to support agricultural development. PMID:27073917

Toward an automated low-cost three-dimensional crop surface monitoring system using oblique stereo imagery from consumer-grade smart cameras

NASA Astrophysics Data System (ADS)

Brocks, Sebastian; Bendig, Juliane; Bareth, Georg

2016-10-01

Crop surface models (CSMs) representing plant height above ground level are a useful tool for monitoring in-field crop growth variability and enabling precision agriculture applications. A semiautomated system for generating CSMs was implemented. It combines an Android application running on a set of smart cameras for image acquisition and transmission and a set of Python scripts automating the structure-from-motion (SfM) software package Agisoft Photoscan and ArcGIS. Only ground-control-point (GCP) marking was performed manually. This system was set up on a barley field experiment with nine different barley cultivars in the growing period of 2014. Images were acquired three times a day for a period of two months. CSMs were successfully generated for 95 out of 98 acquisitions between May 2 and June 30. The best linear regressions of the CSM-derived plot-wise averaged plant-heights compared to manual plant height measurements taken at four dates resulted in a coefficient of determination R2 of 0.87 and a root-mean-square error (RMSE) of 0.08 m, with Willmott's refined index of model performance dr equaling 0.78. In total, 103 mean plot heights were used in the regression based on the noon acquisition time. The presented system succeeded in semiautomatedly monitoring crop height on a plot scale to field scale.

Open Source Software Projects Needing Security Investments

DTIC Science & Technology

2015-06-19

modtls, BouncyCastle, gpg, otr, axolotl. 7. Static analyzers: Clang, Frama-C. 8. Nginx. 9. OpenVPN . It was noted that the funding model may be similar...to OpenSSL, where consulting funds the company. It was also noted that OpenVPN needs to correctly use OpenSSL in order to be secure, so focusing on...Dovecot 4. Other high-impact network services: OpenSSH, OpenVPN , BIND, ISC DHCP, University of Delaware NTPD 5. Core infrastructure data parsers

SSH gene expression profile of Eisenia andrei exposed in situ to a naturally contaminated soil from an abandoned uranium mine.

PubMed

Lourenço, Joana; Pereira, Ruth; Gonçalves, Fernando; Mendo, Sónia

2013-02-01

The effects of the exposure of earthworms (Eisenia andrei) to contaminated soil from an abandoned uranium mine, were assessed through gene expression profile evaluation by Suppression Subtractive Hybridization (SSH). Organisms were exposed in situ for 56 days, in containers placed both in a contaminated and in a non-contaminated site (reference). Organisms were sampled after 14 and 56 days of exposure. Results showed that the main physiological functions affected by the exposure to metals and radionuclides were: metabolism, oxireductase activity, redox homeostasis and response to chemical stimulus and stress. The relative expression of NADH dehydrogenase subunit 1 and elongation factor 1 alpha was also affected, since the genes encoding these enzymes were significantly up and down-regulated, after 14 and 56 days of exposure, respectively. Also, an EST with homology for SET oncogene was found to be up-regulated. To the best of our knowledge, this is the first time that this gene was identified in earthworms and thus, further studies are required, to clarify its involvement in the toxicity of metals and radionuclides. Considering the results herein presented, gene expression profiling proved to be a very useful tool to detect earthworms underlying responses to metals and radionuclides exposure, pointing out for the detection and development of potential new biomarkers. Copyright © 2012 Elsevier Inc. All rights reserved.

Construction and analysis of an SSH cDNA library of early heat-induced genes of Vigna aconitifolia variety RMO-40.

PubMed

Rampuria, Sakshi; Joshi, Uma; Palit, Paramita; Deokar, Amit A; Meghwal, Raju R; Mohapatra, T; Srinivasan, R; Bhatt, K V; Sharma, Ramavtar

2012-11-01

Moth bean ( Vigna aconitifolia (Jacq.) Marechal) is an important grain legume crop grown in rain fed areas of hot desert regions of Thar, India, under scorching sun rays with very little supplementation of water. An SSH cDNA library was generated from leaf tissues of V. aconitifolia var. RMO-40 exposed to an elevated temperature of 42 °C for 5 min to identify early-induced genes. A total of 488 unigenes (114 contigs and 374 singletons) were derived by cluster assembly and sequence alignment of 738 ESTs; out of 206 ESTs (28%) of unknown proteins, 160 ESTs (14%) were found to be novel to moth bean. Only 578 ESTs (78%) showed significant BLASTX similarity (<1 × 10(-6)) in the NCBI non-redundant database. Gene ontology functional classification terms were retrieved for 479 (65%) sequences, and 339 sequences were annotated with 165 EC codes and mapped to 68 different KEGG pathways. Four hundred and fifty-two ESTs were further annotated with InterProScan (IPS), and no IPS was assigned to 153 ESTs. In addition, the expression level of 27 ESTs in response to heat stress was evaluated through semiquantitative RT-PCR assay. Approximately 20 different signaling genes and 16 different transcription factors have been shown to be associated with heat stress in moth bean for the first time.

Transcriptional Analysis of Drought-Induced Genes in the Roots of a Tolerant Genotype of the Common Bean (Phaseolus vulgaris L.)

PubMed Central

Recchia, Gustavo Henrique; Caldas, Danielle Gregorio Gomes; Beraldo, Ana Luiza Ahern; da Silva, Márcio José; Tsai, Siu Mui

2013-01-01

In Brazil, common bean (Phaseolus vulgaris L.) productivity is severely affected by drought stress due to low technology cultivation systems. Our purpose was to identify differentially expressed genes in roots of a genotype tolerant to water deficit (BAT 477) when submitted to an interruption of irrigation during its development. A SSH library was constructed taking as “driver” the genotype Carioca 80SH (susceptible to drought). After clustering and data mining, 1572 valid reads were obtained, resulting in 1120 ESTs (expressed sequence tags). We found sequences for transcription factors, carbohydrates metabolism, proline-rich proteins, aquaporins, chaperones and ubiquitins, all of them organized according to their biological processes. Our suppressive subtractive hybridization (SSH) library was validated through RT-qPCR experiment by assessing the expression patterns of 10 selected genes in both genotypes under stressed and control conditions. Finally, the expression patterns of 31 ESTs, putatively related to drought responses, were analyzed in a time-course experiment. Our results confirmed that such genes are more expressed in the tolerant genotype during stress; however, they are not exclusive, since different levels of these transcripts were also detected in the susceptible genotype. In addition, we observed a fluctuation in gene regulation over time for both the genotypes, which seem to adopt and adapt different strategies in order to develop tolerance against this stress. PMID:23538843

A case report of rapid spontaneous redistribution of acute supratentorial subdural hematoma to the entire spinal subdural space presenting as a Pourfour du Petit syndrome and review of the literature.

PubMed

Balik, Vladimir; Kolembus, Petr; Svajdler, Marian; Sulla, Igor; Vaverka, Miroslav; Hrabalek, Lumir

2013-07-01

This report illustrates the rare rapid spontaneous redistribution of an acute intracranial supratentorial subdural hematoma (AISSDH) to the entire spinal subdural space (SSS). The study is also unique in that the spinal subdural hematoma (SSH) manifested by the extremely rare Pourfour du Petit Syndrome (PPS). A 66-year-old man sustained blunt head trauma. On admission to the regional hospital, he scored 6 on GCS and his pupils were of equal size reacting to light. Initial computed tomography (CT) scan showed a unilateral AISSDH. The patient was referred to our department and arrived 16 h following the accident, at which time a repeat CT scan revealed almost complete resolution of the AISSDH without clinical improvement. On the 9th postinjury day transient anisocoria and tachycardia without spinal symptomatology developed. Since neither neurological examination nor follow-up CT scans showed intracranial pathology explaining the anisocoria, the patient was treated further conservatively. During the next 3 days circulatory instability developed and the patient succumbed to primary traumatic injury. Autopsy revealed a SSH occupying the entire SSS. This case calls attention to the unique combination of the displacement of an AISSDH to the SSS and the presentation of this clinical entity by the PPS. Copyright © 2012 Elsevier B.V. All rights reserved.

Molecular characterization of Brucella abortus chromosome II recombination.

PubMed

Tsoktouridis, Georgios; Merz, Christian A; Manning, Simon P; Giovagnoli-Kurtz, Renée; Williams, Leanne E; Mujer, Cesar V; Hagius, Sue; Elzer, Philip; Redkar, Rajendra J; Patra, Guy; DelVecchio, Vito G

2003-10-01

Large-scale genomic rearrangements including inversions, deletions, and duplications are significant in bacterial evolution. The recently completed Brucella melitensis 16M and Brucella suis 1330 genomes have facilitated the investigation of such events in the Brucella spp. Suppressive subtractive hybridization (SSH) was employed in identifying genomic differences between B. melitensis 16M and Brucella abortus 2308. Analysis of 45 SSH clones revealed several deletions on chromosomes of B. abortus and B. melitensis that encoded proteins of various metabolic pathways. A 640-kb inversion on chromosome II of B. abortus has been reported previously (S. Michaux Charachon, G. Bourg, E. Jumas Bilak, P. Guigue Talet, A. Allardet Servent, D. O'Callaghan, and M. Ramuz, J. Bacteriol. 179:3244-3249, 1997) and is further described in this study. One end of the inverted region is located on a deleted TATGC site between open reading frames BMEII0292 and BMEII0293. The other end inserted at a GTGTC site of the cyclic-di-GMP phosphodiesterase A (PDEA) gene (BMEII1009), dividing PDEA into two unequal DNA segments of 160 and 977 bp. As a consequence of inversion, the 160-bp segment that encodes the N-terminal region of PDEA was relocated at the opposite end of the inverted chromosomal region. The splitting of the PDEA gene most likely inactivated the function of this enzyme. A recombination mechanism responsible for this inversion is proposed.

Molecular Characterization of Brucella abortus Chromosome II Recombination

PubMed Central

Tsoktouridis, Georgios; Merz, Christian A.; Manning, Simon P.; Giovagnoli-Kurtz, Renée; Williams, Leanne E.; Mujer, Cesar V.; Hagius, Sue; Elzer, Philip; Redkar, Rajendra J.; Patra, Guy; DelVecchio, Vito G.

2003-01-01

Large-scale genomic rearrangements including inversions, deletions, and duplications are significant in bacterial evolution. The recently completed Brucella melitensis 16M and Brucella suis 1330 genomes have facilitated the investigation of such events in the Brucella spp. Suppressive subtractive hybridization (SSH) was employed in identifying genomic differences between B. melitensis 16M and Brucella abortus 2308. Analysis of 45 SSH clones revealed several deletions on chromosomes of B. abortus and B. melitensis that encoded proteins of various metabolic pathways. A 640-kb inversion on chromosome II of B. abortus has been reported previously (S. Michaux Charachon, G. Bourg, E. Jumas Bilak, P. Guigue Talet, A. Allardet Servent, D. O'Callaghan, and M. Ramuz, J. Bacteriol. 179:3244-3249, 1997) and is further described in this study. One end of the inverted region is located on a deleted TATGC site between open reading frames BMEII0292 and BMEII0293. The other end inserted at a GTGTC site of the cyclic-di-GMP phosphodiesterase A (PDEA) gene (BMEII1009), dividing PDEA into two unequal DNA segments of 160 and 977 bp. As a consequence of inversion, the 160-bp segment that encodes the N-terminal region of PDEA was relocated at the opposite end of the inverted chromosomal region. The splitting of the PDEA gene most likely inactivated the function of this enzyme. A recombination mechanism responsible for this inversion is proposed. PMID:14526025

Identification of differentially expressed genes in human lung squamous cell carcinoma using suppression subtractive hybridization.

PubMed

Sun, Wenyue; Zhang, Kaitai; Zhang, Xinyu; Lei, Wendong; Xiao, Ting; Ma, Jinfang; Guo, Suping; Shao, Shujuan; Zhang, Husheng; Liu, Yan; Yuan, Jinsong; Hu, Zhi; Ma, Ying; Feng, Xiaoli; Hu, Songnian; Zhou, Jun; Cheng, Shujun; Gao, Yanning

2004-08-20

Lung cancer is one of the major causes of cancer-related deaths. Over the past decade, much has been known about the molecular changes associated with lung carcinogenesis; however, our understanding to lung tumorigenesis is still incomplete. To identify genes that are differentially expressed in squamous cell carcinoma (SCC) of the lung, we compared the expression profiles between primarily cultured SCC tumor cells and bronchial epithelial cells derived from morphologically normal bronchial epithelium of the same patient. Using suppression subtractive hybridization (SSH), two cDNA libraries containing up- and down-regulated genes in the tumor cells were constructed, named as LCTP and LCBP. The two libraries comprise 258 known genes and 133 unknown genes in total. The known up-regulated genes in the library LCTP represented a variety of functional groups; including metabolism-, cell adhesion and migration-, signal transduction-, and anti-apoptosis-related genes. Using semi-quantitative reverse transcription-polymerase chain reaction, seven genes chosen randomly from the LCTP were analyzed in the tumor tissue paired with its corresponding adjacent normal lung tissue derived from 16 cases of the SCC. Among them, the IQGAP1, RAP1GDS1, PAICS, MLF1, and MARK1 genes showed a consistent expression pattern with that of the SSH analysis. Identification and further characterization of these genes may allow a better understanding of lung carcinogenesis.

Motivation and motor control: hemispheric specialization for approach motivation reverses with handedness.

PubMed

Brookshire, Geoffrey; Casasanto, Daniel

2012-01-01

According to decades of research on affective motivation in the human brain, approach motivational states are supported primarily by the left hemisphere and avoidance states by the right hemisphere. The underlying cause of this specialization, however, has remained unknown. Here we conducted a first test of the Sword and Shield Hypothesis (SSH), according to which the hemispheric laterality of affective motivation depends on the laterality of motor control for the dominant hand (i.e., the "sword hand," used preferentially to perform approach actions) and the nondominant hand (i.e., the "shield hand," used preferentially to perform avoidance actions). To determine whether the laterality of approach motivation varies with handedness, we measured alpha-band power (an inverse index of neural activity) in right- and left-handers during resting-state electroencephalography and analyzed hemispheric alpha-power asymmetries as a function of the participants' trait approach motivational tendencies. Stronger approach motivation was associated with more left-hemisphere activity in right-handers, but with more right-hemisphere activity in left-handers. The hemispheric correlates of approach motivation reversed between right- and left-handers, consistent with the way they typically use their dominant and nondominant hands to perform approach and avoidance actions. In both right- and left-handers, approach motivation was lateralized to the same hemisphere that controls the dominant hand. This covariation between neural systems for action and emotion provides initial support for the SSH.

[Differential gene expression in incompatible interaction between Lilium regale Wilson and Fusarium oxysporum f. sp. lilii revealed by combined SSH and microarray analysis].

PubMed

Rao, J; Liu, D; Zhang, N; He, H; Ge, F; Chen, C

2014-01-01

Fusarium wilt, caused by a soilborne pathogen Fusarium oxysporum f. sp. lilii, is the major disease of lily (Lilium L.). In order to isolate the genes differentially expressed in a resistant reaction to F. oxysporum in L. regale Wilson, a cDNA library was constructed with L. regale root during F. oxysporum infection using the suppression subtractive hybridization (SSH), and a total of 585 unique expressed sequence tags (ESTs) were obtained. Furthermore, the gene expression profiles in the incompatible interaction between L. regale and F. oxysporum were revealed by oligonucleotide microarray analysis of 585 unique ESTs comparison to the compatible interaction between a susceptible Lilium Oriental Hybrid 'Siberia' and F. oxysporum. The result of expression profile analysis indicated that the genes encoding pathogenesis-related proteins (PRs), antioxidative stress enzymes, secondary metabolism enzymes, transcription factors, signal transduction proteins as well as a large number of unknown genes were involved in early defense response of L. regale to F. oxysporum infection. Moreover, the following quantitative reverse transcription PCR (QRT-PCR) analysis confirmed reliability of the oligonucleotide microarray data. In the present study, isolation of differentially expressed genes in L. regale during response to F. oxysporum helped to uncover the molecular mechanism associated with the resistance of L. regale against F. oxysporum.

Characteristics of Mini-Magnetospheres Formed by Paleo-Magnetic Fields of Mars

NASA Technical Reports Server (NTRS)

Ness, N. F.; Krymskii, A. M.; Crider, D. H.; Breus, T. K.; Acuna, M. H.; Hinson, D.; Barashyan, K. K.

2003-01-01

The intensely and non-uniformly magnetized crustal sources generate an effective large-scale magnetic field. In the Southern hemisphere the strongest crustal fields lead to the formation of large-scale mini-magnetospheres. In the Northern hemisphere, the crustal fields are rather weak and there are only isolated mini-magnetospheres. Re-connection with the interplanetary magnetic field (IMF) occurs in many localized regions. This may occur not only in cusp-like structures above nearly vertical field anomalies but also in halos extending several hundreds of kilometers from these sources. Re-connection will permit solar wind (SW) and more energetic particles to precipitate into and heat the neutral atmosphere. Electron density profiles of the ionosphere of Mars derived from radio occultation data obtained by the Radio Science Mars Global Surveyor (MGS) experiment are concentrated in the near polar regions. The effective scale-height of the neutral atmosphere density in the vicinity of the ionization peak has been derived for each of the profiles studied. The effective scale-heights have been compared with the crustal magnetic fields measured by the MGS Magnetometer/Electron Reflectometer (MAG/ER) experiment. A significant difference between the large-scale mini-magnetospheres and regions outside of them has been found. The neutral atmosphere is cooler inside the large-scale mini-magnetospheres. It appears that outside of the cusps the strong crustal magnetic fields prevent additional heating of the neutral atmosphere by direct interaction of the SW. The scale-height of the neutral atmosphere density derived from the experiment with the MGS Accelerometer has been compared with MAG/ER data. The scale-height was found to be usually larger than mean value near the boundaries of potential mini-magnetospheres and around cusps . It may indicate that the paleo-magnetic/IMF field re-connection is characteristic of the mini-magnetospheres at Mars.

Magnetic field and electric current structure in the chromosphere

NASA Technical Reports Server (NTRS)

Dravins, D.

1974-01-01

The three-dimensional vector magnetic field structure in the chromosphere above an active region is deduced by using high-resolution H-alpha filtergrams together with a simultaneous digital magnetogram. An analog model of the field is made with 400 metal wires representing field lines that outline the H-alpha structure. The height extent of the field is determined from vertical field-gradient observations around sunspots, from observed fibril heights, and from an assumption that the sources of the field are largely local. The computed electric currents (typically 10 mA/sq m) are found to flow in patterns not similar to observed features and not parallel to magnetic fields. Force structures correspond to observed solar features; the dynamics to be expected include: downward motion in bipolar areas in the lower chromosphere, an outflow of the outer chromosphere into the corona with radially outward flow above bipolar plage regions, and motion of arch filament systems.

Transition in a Supersonic Boundary-Layer Due to Roughness and Acoustic Disturbances

NASA Technical Reports Server (NTRS)

Balakumar, P.

2003-01-01

The transition process induced by the interaction of an isolated roughness with acoustic disturbances in the free stream is numerically investigated for a boundary layer over a flat plate with a blunted leading edge at a free stream Mach number of 3.5. The roughness is assumed to be of Gaussian shape and the acoustic disturbances are introduced as boundary condition at the outer field. The governing equations are solved using the 5'h-rder accurate weighted essentially non-oscillatory (WENO) scheme for space discretization and using third- order total-variation-diminishing (TVD) Runge- Kutta scheme for time integration. The steady field induced by the two and three-dimensional roughness is also computed. The flow field induced by two-dimensional roughness exhibits different characteristics depending on the roughness heights. At small roughness heights the flow passes smoothly over the roughness, at moderate heights the flow separates downstream of the roughness and at larger roughness heights the flow separates upstream and downstream of the roughness. Computations also show that disturbances inside the boundary layer is due to the direct interaction of the acoustic waves and isolated roughness plays a minor role in generating instability waves.

Southern Ocean monthly wave fields for austral winters 1985-1988 by Geosat radar altimeter

USGS Publications Warehouse

Josberger, E.G.; Mognard, N.M.

1996-01-01

Four years of monthly averaged wave height fields for the austral winters 19851988 derived from the Geosat altimeter data show a spatial variability of the scale of 500-1000 km that varies monthly and annually. This variability is superimposed on the zonal patterns surrounding the Antarctic continent and characteristic of the climatology derived from the U.S. Navy [1992] Marine Climatic Atlas of the World. The location and the intensity of these large-scale features, which are not found in the climatological fields, exhibit strong monthly and yearly variations. A global underestimation of the climatological mean wave heights by more than l m is also found over large regions of the Southern Ocean. The largest monthly averaged significant wave heights are above 5 m and are found during August of every year in the Indian Ocean, south of 40??S. The monthly wave fields show more variability in the Atlantic and Pacific Oceans than in the Indian Ocean. The Seasat data from 1978 and the Geosat data from 1985 and 1988 show an eastward rotation of the largest wave heights. However, this rotation is absent in 1986 and 1987; the former was a year of unusually low sea states, and the latter was a year of unusually high sea states, which suggests a link to the El Nin??o-Southern Oscillation event of 1986. Copyright 1996 by the American Geophysical Union.

Building capacity for providing canopy cover and canopy height at FIA plot locations using high-resolution imagery and leaf-off LiDAR

Treesearch

Rachel Riemann; Jarlath O' Neil-Dunne; Greg C. Liknes

2012-01-01

Tree canopy cover and canopy height information are essential for estimating volume, biomass, and carbon; defining forest cover; and characterizing wildlife habitat. The amount of tree canopy cover also influences water quality and quantity in both rural and urban settings. Tree canopy cover and canopy height are currently collected at FIA plots either in the field or...

Milky Way red dwarfs in the BoRG survey; galactic scale-height and the distribution of dwarf stars in WFC3 imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holwerda, B. W.; Bouwens, R.; Trenti, M.

2014-06-10

We present a tally of Milky Way late-type dwarf stars in 68 Wide Field Camera 3 (WFC3) pure-parallel fields (227 arcmin{sup 2}) from the Brightest of Reionizing Galaxies survey for high-redshift galaxies. Using spectroscopically identified M-dwarfs in two public surveys, the Cosmic Assembly Near-IR Deep Extragalactic Legacy Survey and the Early Release Science mosaics, we identify a morphological selection criterion using the half-light radius (r {sub 50}), a near-infrared J – H, G – J color region where M-dwarfs are found, and a V – J relation with M-dwarf subtype. We apply this morphological selection of stellar objects, color-color selectionmore » of M-dwarfs, and optical-near-infrared color subtyping to compile a catalog of 274 M-dwarfs belonging to the disk of the Milky Way with a limiting magnitude of m {sub F125W} < 24(AB). Based on the M-dwarf statistics, we conclude that (1) the previously identified north-south discrepancy in M-dwarf numbers persists in our sample; there are more M-dwarfs in the northern fields on average than in southern ones, (2) the Milky Way's single disk scale-height for M-dwarfs is 0.3-4 kpc, depending on subtype, (3) the scale-height depends on M-dwarf subtype with early types (M0-4) high scale-height (z {sub 0} = 3-4 kpc) and later types M5 and above in the thin disk (z {sub 0} = 0.3-0.5 kpc), (4) a second component is visible in the vertical distribution, with a different, much higher scale-height in the southern fields compared to the northern ones. We report the M-dwarf component of the Sagittarius stream in one of our fields with 11 confirmed M-dwarfs, seven of which are at the stream's distance. In addition to the M-dwarf catalog, we report the discovery of 1 T-dwarfs and 30 L-dwarfs from their near-infrared colors. The dwarf scale-height and the relative low incidence in our fields of L- and T-dwarfs in these fields makes it unlikely that these stars will be interlopers in great numbers in color-selected samples of high-redshift galaxies. The relative ubiquity of M-dwarfs however will make them ideal tracers of Galactic halo substructure with EUCLID and reference stars for James Webb Space Telescope observations.« less

Magnetic fields in spiral galaxies

NASA Astrophysics Data System (ADS)

Krause, Marita

2015-03-01

The magnetic field structure in edge-on galaxies observed so far shows a plane-parallel magnetic field component in the disk of the galaxy and an X-shaped field in its halo. The plane-parallel field is thought to be the projected axisymmetric (ASS) disk field as observed in face-on galaxies. Some galaxies addionionally exhibit strong vertical magnetic fields in the halo right above and below the central region of the disk. The mean-field dynamo theory in the disk cannot explain these observed fields without the action of a wind, which also probably plays an important role to keep the vertical scale heights constant in galaxies of different Hubble types and star formation activities, as has been observed in the radio continuum: At λ6 cm the vertical scale heights of the thin disk and the thick disk/halo in a sample of five edge-on galaxies are similar with a mean value of 300 +/- 50 pc for the thin disk and 1.8 +/- 0.2 kpc for the thick disk (a table and references are given in Krause 2011) with our sample including the brightest halo observed so far, NGC 253, with strong star formation, as well as one of the weakest halos, NGC 4565, with weak star formation. If synchrotron emission is the dominant loss process of the relativistic electrons the outer shape of the radio emission should be dumbbell-like as has been observed in several edge-on galaxies like e.g. NGC 253 (Heesen et al. 2009) and NGC 4565. As the synchrotron lifetime t syn at a single frequency is proportional to the total magnetic field strength B t -1.5, a cosmic ray bulk speed (velocity of a galactic wind) can be defined as v CR = h CR /t syn = 2 h z /t syn , where h CR and h z are the scale heights of the cosmic rays and the observed radio emission at this freqnency. Similar observed radio scale heights imply a self regulation mechanism between the galactic wind velocity, the total magnetic field strength and the star formation rate SFR in the disk: v CR ~ B t 1.5 ~ SFR ~ 0.5 (Niklas & Beck 1997).

Differential expression of genes encoding anti-oxidant enzymes in Sydney rock oysters, Saccostrea glomerata (Gould) selected for disease resistance.

PubMed

Green, Timothy J; Dixon, Tom J; Devic, Emilie; Adlard, Robert D; Barnes, Andrew C

2009-05-01

Sydney rock oysters (Saccostrea glomerata) selectively bred for disease resistance (R) and wild-caught control oysters (W) were exposed to a field infection of disseminating neoplasia. Cumulative mortality of W oysters (31.7%) was significantly greater than R oysters (0.0%) over the 118 days of the experiment. In an attempt to understand the biochemical and molecular pathways involved in disease resistance, differentially expressed sequence tags (ESTs) between R and W S. glomerata hemocytes were identified using the PCR technique, suppression subtractive hybridisation (SSH). Sequencing of 300 clones from two SSH libraries revealed 183 distinct sequences of which 113 shared high similarity to sequences in the public databases. Putative function could be assigned to 64 of the sequences. Expression of nine ESTs homologous to genes previously shown to be involved in bivalve immunity was further studied using quantitative reverse-transcriptase PCR (qRT-PCR). The base-line expression of an extracellular superoxide dismutase (ecSOD) and a small heat shock protein (sHsP) were significantly increased, whilst peroxiredoxin 6 (Prx6) and interferon inhibiting cytokine factor (IK) were significantly decreased in R oysters. From these results it was hypothesised that R oysters would be able to generate the anti-parasitic compound, hydrogen peroxide (H(2)O(2)) faster and to higher concentrations during respiratory burst due to the differential expression of genes for the two anti-oxidant enzymes of ecSOD and Prx6. To investigate this hypothesis, protein extracts from hemolymph were analysed for oxidative burst enzyme activity. Analysis of the cell free hemolymph proteins separated by native-polyacrylamide gel electrophoresis (PAGE) failed to detect true superoxide dismutase (SOD) activity by assaying dismutation of superoxide anion in zymograms. However, the ecSOD enzyme appears to generate hydrogen peroxide, presumably via another process, which is yet to be elucidated. This corroborates our hypothesis, whilst phylogenetic analysis of the complete coding sequence (CDS) of the S. glomerata ecSOD gene is supportive of the atypical nature of the ecSOD enzyme. Results obtained from this work further the current understanding of the molecular mechanisms involved in resistance to disease in this economically important bivalve, and shed further light on the anomalous oxidative processes involved.

47 CFR 73.186 - Establishment of effective field at one kilometer.

Code of Federal Regulations, 2013 CFR

2013-10-01

... radiation (not less than one wave length or 5 times the vertical height in the case of a single element, i.e... lieu of the required minimum physical heights of the antennas proper. Also, in other situations, it may...

47 CFR 73.186 - Establishment of effective field at one kilometer.

Code of Federal Regulations, 2014 CFR

2014-10-01

... radiation (not less than one wave length or 5 times the vertical height in the case of a single element, i.e... lieu of the required minimum physical heights of the antennas proper. Also, in other situations, it may...

47 CFR 73.186 - Establishment of effective field at one kilometer.

Code of Federal Regulations, 2012 CFR

2012-10-01

... radiation (not less than one wave length or 5 times the vertical height in the case of a single element, i.e... lieu of the required minimum physical heights of the antennas proper. Also, in other situations, it may...

47 CFR 73.186 - Establishment of effective field at one kilometer.

Code of Federal Regulations, 2011 CFR

2011-10-01

... radiation (not less than one wave length or 5 times the vertical height in the case of a single element, i.e... lieu of the required minimum physical heights of the antennas proper. Also, in other situations, it may...

Response of rice cultivars to rates of nitrogen and potassium application in field and pot conditions.

PubMed

Bahmaniar, M A; Ranjbar, G A

2007-05-01

Nitrogen and potassium are the yield-limiting nutrients in rice production regions of Iran. Use of N and K efficient cultivars is an important complementary strategy in improving rice yield, increasing the quality properties of rice grains and reducing cost of production. In order to consider the effects of different amounts of N and K application on rice (Oryza sativa L.) yield and yield components in pot and field conditions these experiments were undertaken in 2004 at Sari Agricultural Station, Iran. Four levels of N (0, 50, 100 and 150 Kg N ha(-1) in field and 0, 0.6, 1.2 and 1.8 g N pot(-1) in pot) corresponding with four levels of K (0, 75, 150 and 225 kg K2O ha(-1) in field and 0, 0.5, 1 and 1.5 g K2O pot(-1) in pot) were applied in a split-factorial plot design with three replications in both pot and field experiments, variously. Grain yield, number of grain per panicle, number of tiller, plant height, length of flag leaf, total and shoot dry matter, 1000 grain weight and harvest index have been increased by N application in field conditions. However, in pot conditions grain yield, number of grain per panicle, number of tiller, plant height, width of flag leaf, total and shoot dry matter, leaf nitrogen contents and harvest index have significantly been increased (p < or = 0.05). Potassium application in field conditions has significantly affected on all characteristics but 1000 grain weight and leaf N and K contents. Simultaneous application of N and K have increasingly affected on grain yield, plant height, shoot dry matter and harvest index in field conditions and on plant height, length of flag leaf and shoot dry matter in pot conditions (p < or = 0.05).

Coaligned observations of solar magnetic fields at different heights: MSFC Center director's discretionary fund final report (Project No. 88-10)

NASA Technical Reports Server (NTRS)

Hagyard, M. J.; West, E. A.; Gary, G. A.; Smith, J. E.

1990-01-01

The objective was to develop the capability for and coaligned observations of the structure and evolution of the Sun's magnetic field at two different heights in the solar atmosphere: the photosphere, which is the lowest region observable with optical telescopes; and the chromosphere, which lies just above the photosphere and is the region where the magnetic field dominates the gas motion so that a well-ordered structure governed by the field is observed. By obtaining this three-dimensional picture of the solar magnetic field, a better understanding can be developed of the magnetic forces that produce and control the dynamic, high-energy phenomena occurring in the solar atmosphere that can affect the entire heliosphere, including the terrestrial environment.

Neural network-based estimates of Southern Ocean net community production from in-situ O2 / Ar and satellite observation: a methodological study

NASA Astrophysics Data System (ADS)

Chang, C.-H.; Johnson, N. C.; Cassar, N.

2013-10-01

Southern Ocean organic carbon export plays an important role in the global carbon cycle, yet its basin-scale climatology and variability are uncertain due to limited coverage of in situ observations. In this study, a neural network approach based on the self-organizing map (SOM) is adopted to construct weekly gridded (1° × 1°) maps of organic carbon export for the Southern Ocean from 1998 to 2009. The SOM is trained with in situ measurements of O2 / Ar-derived net community production (NCP) that are tightly linked to the carbon export in the mixed layer on timescales of 1-2 weeks, and six potential NCP predictors: photosynthetically available radiation (PAR), particulate organic carbon (POC), chlorophyll (Chl), sea surface temperature (SST), sea surface height (SSH), and mixed layer depth (MLD). This non-parametric approach is based entirely on the observed statistical relationships between NCP and the predictors, and therefore is strongly constrained by observations. A thorough cross-validation yields three retained NCP predictors, Chl, PAR, and MLD. Our constructed NCP is further validated by good agreement with previously published independent in situ derived NCP of weekly or longer temporal resolution through real-time and climatological comparisons at various sampling sites. The resulting November-March NCP climatology reveals a pronounced zonal band of high NCP roughly following the subtropical front in the Atlantic, Indian and western Pacific sectors, and turns southeastward shortly after the dateline. Other regions of elevated NCP include the upwelling zones off Chile and Namibia, Patagonian Shelf, Antarctic coast, and areas surrounding the Islands of Kerguelen, South Georgia, and Crozet. This basin-scale NCP climatology closely resembles that of the satellite POC field and observed air-sea CO2 flux. The long-term mean area-integrated NCP south of 50° S from our dataset, 14 mmol C m-2 d-1, falls within the range of 8.3-24 mmol C m-2 d-1 from other model estimates. A broad agreement is found in the basin-wide NCP climatology among various models but with significant spatial variations, particularly in the Patagonian Shelf. Our approach provides a comprehensive view of the Southern Ocean NCP climatology and a potential opportunity to further investigate interannual and intraseasonal variability.

Neural network-based estimates of Southern Ocean net community production from in situ O2 / Ar and satellite observation: a methodological study

NASA Astrophysics Data System (ADS)

Chang, C.-H.; Johnson, N. C.; Cassar, N.

2014-06-01

Southern Ocean organic carbon export plays an important role in the global carbon cycle, yet its basin-scale climatology and variability are uncertain due to limited coverage of in situ observations. In this study, a neural network approach based on the self-organizing map (SOM) is adopted to construct weekly gridded (1° × 1°) maps of organic carbon export for the Southern Ocean from 1998 to 2009. The SOM is trained with in situ measurements of O2 / Ar-derived net community production (NCP) that are tightly linked to the carbon export in the mixed layer on timescales of one to two weeks and with six potential NCP predictors: photosynthetically available radiation (PAR), particulate organic carbon (POC), chlorophyll (Chl), sea surface temperature (SST), sea surface height (SSH), and mixed layer depth (MLD). This nonparametric approach is based entirely on the observed statistical relationships between NCP and the predictors and, therefore, is strongly constrained by observations. A thorough cross-validation yields three retained NCP predictors, Chl, PAR, and MLD. Our constructed NCP is further validated by good agreement with previously published, independent in situ derived NCP of weekly or longer temporal resolution through real-time and climatological comparisons at various sampling sites. The resulting November-March NCP climatology reveals a pronounced zonal band of high NCP roughly following the Subtropical Front in the Atlantic, Indian, and western Pacific sectors, and turns southeastward shortly after the dateline. Other regions of elevated NCP include the upwelling zones off Chile and Namibia, the Patagonian Shelf, the Antarctic coast, and areas surrounding the Islands of Kerguelen, South Georgia, and Crozet. This basin-scale NCP climatology closely resembles that of the satellite POC field and observed air-sea CO2 flux. The long-term mean area-integrated NCP south of 50° S from our dataset, 17.9 mmol C m-2 d-1, falls within the range of 8.3 to 24 mmol C m-2 d-1 from other model estimates. A broad agreement is found in the basin-wide NCP climatology among various models but with significant spatial variations, particularly in the Patagonian Shelf. Our approach provides a comprehensive view of the Southern Ocean NCP climatology and a potential opportunity to further investigate interannual and intraseasonal variability.

Observed seasonal and interannual variability of the near-surface thermal structure of the Arabian Sea Warm Pool

NASA Astrophysics Data System (ADS)

Rao, R. R.; Ramakrishna, S. S. V. S.

2017-06-01

The observed seasonal and interannual variability of near-surface thermal structure of the Arabian Sea Warm Pool (ASWP) is examined utilizing a reanalysis data set for the period 1990-2008. During a year, the ASWP progressively builds from February, reaches its peak by May only in the topmost 60 m water column. The ASWP Index showed a strong seasonal cycle with distinct interannual signatures. The years with higher (lower) sea surface temperature (SST) and larger (smaller) spatial extent are termed as strong (weak) ASWP years. The differences in the magnitude and spatial extent of thermal structure between the strong and weak ASWP regimes are seen more prominently in the topmost 40 m water column. The heat content values with respect to 28 °C isotherm (HC28) are relatively higher (lower) during strong (weak) ASWP years. Even the secondary peak in HC28 seen during the preceding November-December showed higher (lower) magnitude during the strong ASWP (weak) years. The influence of the observed variability in the surface wind field, surface net air-sea heat flux, near-surface mixed layer thickness, sea surface height (SSH) anomaly, depth of 20 °C isotherm and barrier layer thickness is examined to explain the observed differences in the near-surface thermal structure of the ASWP between strong and weak regimes. The surface wind speed is much weaker in particular during the preceding October and February-March corresponding to the strong ASWP years when compared to those of the weak ASWP years implying its important role. Both stronger winter cooling during weak ASWP years and stronger pre-monsoon heating during strong ASWP years through the surface air-sea heat fluxes contribute to the observed sharp contrast in the magnitudes of both the regimes of the ASWP. The upwelling Rossby wave during the preceding summer monsoon, post-monsoon and winter seasons is stronger corresponding to the weak ASWP regime when compared to the strong ASWP regime resulting in greater cooling of the near-surface layers during the summer monsoon season of the preceding year. On the other hand, the downwelling Rossby wave is stronger during pre-monsoon months during the strong ASWP regime when compared to weak ASWP regime leading to lesser cooling during strong ASWP regime.

Application of Lidar remote sensing to the estimation of forest canopy and stand structure

NASA Astrophysics Data System (ADS)

Lefsky, Michael Andrew

A new remote sensing instrument, SLICER (Scanning Lidar Imager of Canopies by Echo Recovery), has been applied to the problem of remote sensing the canopy and stand structure of two groups of deciduous forests, Tulip Poplar-Oak stands in the vicinity of Annapolis, MD. and bottomland hardwood stands near Williamston, NC. The ability of the SLICER instrument to remotely sense the vertical distribution of canopy structure (Canopy Height Profile), bulk canopy transmittance, and several indices of canopy height has been successfully validated using twelve stands with coincident field and SLICER estimates of canopy structure. Principal components analysis has been applied to canopy height profiles from both field sites, and three significant factors were identified, each closely related to the amount of foliage in a recognizable layer of the forest, either understory, midstory, or overstory. The distribution of canopy structure to these layers is significantly correlated with the size and number of stems supporting them. The same layered structure was shown to apply to both field and SLICER remotely sensed canopy height profiles, and to apply to SLICER remotely sensed canopy profiles from both the bottomland hardwood stands in the coastal plain of North Carolina, and to mesic Tulip-Poplars stands in the upland coastal plain of Maryland. Linear regressions have demonstrated that canopy and stand structure are correlated to both a statistically significant and useful degree. Stand age and stem density is more highly correlated to stand height, while stand basal area and aboveground biomass are more closely related to a new measure of canopy structure, the quadratic mean canopy height. A geometric model of canopy structure has been shown to explain the differing relationships between canopy structure and stand basal area for stands of Eastern Deciduous Forest and Douglas Fir Forest.

Titan dune heights retrieval by using Cassini Radar Altimeter

NASA Astrophysics Data System (ADS)

Mastrogiuseppe, M.; Poggiali, V.; Seu, R.; Martufi, R.; Notarnicola, C.

2014-02-01

The Cassini Radar is a Ku band multimode instrument capable of providing topographic and mapping information. During several of the 93 Titan fly-bys performed by Cassini, the radar collected a large amount of data observing many dune fields in multiple modes such as SAR, Altimeter, Scatterometer and Radiometer. Understanding dune characteristics, such as shape and height, will reveal important clues on Titan's climatic and geological history providing a better understanding of aeolian processes on Earth. Dunes are believed to be sculpted by the action of the wind, weak at the surface but still able to activate the process of sand-sized particle transport. This work aims to estimate dunes height by modeling the shape of the real Cassini Radar Altimeter echoes. Joint processing of SAR/Altimeter data has been adopted to localize the altimeter footprints overlapping dune fields excluding non-dune features. The height of the dunes was estimated by applying Maximum Likelihood Estimation along with a non-coherent electromagnetic (EM) echo model, thus comparing the real averaged waveform with the theoretical curves. Such analysis has been performed over the Fensal dune field observed during the T30 flyby (May 2007). As a result we found that the estimated dunes' peak to trough heights difference was in the order of 60-120 m. Estimation accuracy and robustness of the MLE for different complex scenarios was assessed via radar simulations and Monte-Carlo approach. We simulated dunes-interdunes different composition and roughness for a large set of values verifying that, in the range of possible Titan environment conditions, these two surface parameters have weak effects on our estimates of standard dune heights deviation. Results presented here are the first part of a study that will cover all Titan's sand seas.

On the performance of surface renewal analysis to estimate sensible heat flux over two growing rice fields under the influence of regional advection

NASA Astrophysics Data System (ADS)

Castellví, F.; Snyder, R. L.

2009-09-01

SummaryHigh-frequency temperature data were recorded at one height and they were used in Surface Renewal (SR) analysis to estimate sensible heat flux during the full growing season of two rice fields located north-northeast of Colusa, CA (in the Sacramento Valley). One of the fields was seeded into a flooded paddy and the other was drill seeded before flooding. To minimize fetch requirements, the measurement height was selected to be close to the maximum expected canopy height. The roughness sub-layer depth was estimated to discriminate if the temperature data came from the inertial or roughness sub-layer. The equation to estimate the roughness sub-layer depth was derived by combining simple mixing-length theory, mixing-layer analogy, equations to account for stable atmospheric surface layer conditions, and semi-empirical canopy-architecture relationships. The potential for SR analysis as a method that operates in the full surface boundary layer was tested using data collected over growing vegetation at a site influenced by regional advection of sensible heat flux. The inputs used to estimate the sensible heat fluxes included air temperature sampled at 10 Hz, the mean and variance of the horizontal wind speed, the canopy height, and the plant area index for a given intermediate height of the canopy. Regardless of the stability conditions and measurement height above the canopy, sensible heat flux estimates using SR analysis gave results that were similar to those measured with the eddy covariance method. Under unstable cases, it was shown that the performance was sensitive to estimation of the roughness sub-layer depth. However, an expression was provided to select the crucial scale required for its estimation.

Satellite Moisture Retrieval Techniques. Volume 1. Technique Development and Evaluation

DTIC Science & Technology

1983-01-01

M3H 5T4 ONTARIO, CANADA BIBLIOTECA INSTITUTE ANARTICO CHILENO LUIS THAYER OJEDA 814 SANTIAGO , CHILE METEORO. OFFICE LIBRARY LONDON ROAD...levels (which could in practice be determined from CO2 sounding channels). The water vapor amounts at the different tropospheric levels are the...parameters for the gases H2O, CO2 , O3, N2O, CO, CH4 and O2. Water vapor was the largest contributor to absorption for all SSH/2 channels with smaller

Summer Generation of the Southern Gulf of California Eddy Train

DTIC Science & Technology

2008-06-24

from Cabo Corrientes to the northern GOC), -100 km in the offshore direction, and decay poleward (Figures 1 and 2). These PEBC are formed by the Mexican...added in al I panel (c). The positions of Cabo Corrientes (CC), Mazatlin (MZT), San Lorenzo River (SLR), Sinaloa River (SIN), 244 S MS am us Topolobampo...1984] show that is evidenced by the SSH maximums at Cabo Corrientes that in a 3-layer system, the wavelength with the fastest (Topolobampo), which

A Scenario-Based Protocol Checker for Public-Key Authentication Scheme

NASA Astrophysics Data System (ADS)

Saito, Takamichi

Security protocol provides communication security for the internet. One of the important features of it is authentication with key exchange. Its correctness is a requirement of the whole of the communication security. In this paper, we introduce three attack models realized as their attack scenarios, and provide an authentication-protocol checker for applying three attack-scenarios based on the models. We also utilize it to check two popular security protocols: Secure SHell (SSH) and Secure Socket Layer/Transport Layer Security (SSL/TLS).

Distinguishing Internet-facing ICS Devices Using PLC Programming Information

DTIC Science & Technology

2014-06-19

the course of this research. I would also like to thank the faculty and students at AFIT who helped me think through some of these problems. Finally, I...21 FTP 143 IMAP 1900 UPnP 6379 Redis 22 SSH 161 SNMP 2323 Telnet 7777 Oracle 23 Telnet 443 HTTPS 3306 MySQL 8000 Qconn 25 SMTP 445 SMB 3389 RDP 8080...250ms over the course of 10,000 samples provided sufficient data to test for statistically significant changes to ladder logic execution times with a

How Stationary Are the Internal Tides in a High-Resolution Global Ocean Circulation Model?

DTIC Science & Technology

2014-05-12

Egbert et al., 1994] and that the model global internal tide amplitudes compare well with an altimetric-based tidal analysis [Ray and Byrne, 2010]. The... analysis [Foreman, 1977] applied to the HYCOM total SSH. We will follow Shriver et al. [2012], analyzing the tides along satellite altimeter tracks...spots,’’ the comparison between the model and altimetric analysis is not as good due, in part, to two prob- lems, errors in the model barotropic tides and

Mobile Virtual Private Networking

NASA Astrophysics Data System (ADS)

Pulkkis, Göran; Grahn, Kaj; Mårtens, Mathias; Mattsson, Jonny

Mobile Virtual Private Networking (VPN) solutions based on the Internet Security Protocol (IPSec), Transport Layer Security/Secure Socket Layer (SSL/TLS), Secure Shell (SSH), 3G/GPRS cellular networks, Mobile IP, and the presently experimental Host Identity Protocol (HIP) are described, compared and evaluated. Mobile VPN solutions based on HIP are recommended for future networking because of superior processing efficiency and network capacity demand features. Mobile VPN implementation issues associated with the IP protocol versions IPv4 and IPv6 are also evaluated. Mobile VPN implementation experiences are presented and discussed.

Monitoring height and greenness of non-woody floodplain vegetation with UAV time series

NASA Astrophysics Data System (ADS)

van Iersel, Wimala; Straatsma, Menno; Addink, Elisabeth; Middelkoop, Hans

2018-07-01

Vegetation in river floodplains has important functions for biodiversity, but can also have a negative influence on flood safety. Floodplain vegetation is becoming increasingly heterogeneous in space and time as a result of river restoration projects. To document the spatio-temporal patterns of the floodplain vegetation, the need arises for efficient monitoring techniques. Monitoring is commonly performed by mapping floodplains based on single-epoch remote sensing data, thereby not considering seasonal dynamics of vegetation. The rising availability of unmanned airborne vehicles (UAV) increases monitoring frequency potential. Therefore, we aimed to evaluate the performance of multi-temporal high-spatial-resolution imagery, collected with a UAV, to record the dynamics in floodplain vegetation height and greenness over a growing season. Since the classification accuracy of current airborne surveys remains insufficient for low vegetation types, we focussed on seasonal variation of herbaceous and grassy vegetation with a height up to 3 m. Field reference data on vegetation height were collected six times during one year in 28 field plots within a single floodplain along the Waal River, the main distributary of the Rhine River in the Netherlands. Simultaneously with each field survey, we recorded UAV true-colour and false-colour imagery from which normalized digital surface models (nDSMs) and a consumer-grade camera vegetation index (CGCVI) were calculated. We observed that: (1) the accuracy of a UAV-derived digital terrain model (DTM) varies over the growing season and is most accurate during winter when the vegetation is dormant, (2) vegetation height can be determined from the nDSMs in leaf-on conditions via linear regression (RSME = 0.17-0.33 m), (3) the multitemporal nDSMs yielded meaningful temporal profiles of greenness and vegetation height and (4) herbaceous vegetation shows hysteresis for greenness and vegetation height, but no clear hysteresis was observed for grassland vegetation. These results show the high potential of using UAV-borne sensors for increasing the classification accuracy of low floodplain vegetation within the framework of floodplain monitoring.

A GIS-based approach to stand visualization and spatial pattern analysis in a mixed hardwood forest in West Virginia

Treesearch

Benktesh D. Sharma; Jingxin Wang; Gary Miller

2008-01-01

Tree spatial patterns were characterized for a 75-year-old mixed hardwood forest dominated by northern red oak, chestnut oak, red maple and yellow-poplar. All trees ≥5 inches diameter at breast height (d.b.h.) were measured for diameter, total height, crown height, and crown width along with their locations in the field over an area of 8 acres. The spatial...

Simulation Studies of the Effect of Forest Spatial Structure on InSAR Signature

NASA Technical Reports Server (NTRS)

Sun, Guoqing; Liu, Dawei; Ranson, K. Jon; Koetz, Benjamin

2007-01-01

The height of scattering phase retrieved from InSAR data is considered being correlated with the tree height and the spatial structure of the forest stand. Though some researchers have used simple backscattering models to estimate tree height from the height of scattering center, the effect of forest spatial structure on InSAR data is not well understood yet. A three-dimensional coherent radar backscattering model for forest canopies based on realistic three-dimensional scene was used to investigate the effect in this paper. The realistic spatial structure of forest canopies was established either by field measurements (stem map) or through use of forest growth model. Field measurements or a forest growth model parameterized using local environmental parameters provides information of forest species composition and tree sizes in certain growth phases. A fractal tree model (L-system) was used to simulate individual 3- D tree structure of different ages or heights. Trees were positioned in a stand in certain patterns resulting in a 3-D medium of discrete scatterers. The radar coherent backscatter model took the 3-D forest scene as input and simulates the coherent radar backscattering signature. Interferometric SAR images of 3D scenes were simulated and heights of scattering phase centers were estimated from the simulated InSAR data. The effects of tree height, crown cover, crown depth, and the spatial distribution patterns of trees on the scattering phase center were analyzed. The results will be presented in the paper.

Development of inexpensive prosthetic feet for high-heeled shoes using simple shoe insole model.

PubMed

Meier, Margrit R; Tucker, Kerice A; Hansen, Andrew H

2014-01-01

The large majority of prosthetic feet are aimed at low-heeled shoes, with a few models allowing a heel height of up to 5 cm. However, a survey by the American Podiatric Medical Association indicates that most women wear heels over 5 cm; thus, current prosthetic feet limit most female prosthesis users in their choice. Some prosthetic foot components are heel-height adjustable; however, their plantar surface shapes do not change to match the insole shapes of the shoes with different heel heights. The aims of the study were therefore (1) to develop a model that allows prediction of insole shape for various heel height shoes in combination with different shoe sizes and (2) to develop and field-test low-cost prototypes of prosthetic feet whose insole shapes were based on the new model. An equation was developed to calculate insole shapes independent of shoe size. Field testing of prototype prosthetic feet fabricated based on the equation was successful and demonstrated the utility of the equation.

Determination of the functioning parameters in asymmetrical flow field-flow fractionation with an exponential channel.

PubMed

Déjardin, P

2013-08-30

The flow conditions in normal mode asymmetric flow field-flow fractionation are determined to approach the high retention limit with the requirement d≪l≪w, where d is the particle diameter, l the characteristic length of the sample exponential distribution and w the channel height. The optimal entrance velocity is determined from the solute characteristics, the channel geometry (exponential to rectangular) and the membrane properties, according to a model providing the velocity fields all over the cell length. In addition, a method is proposed for in situ determination of the channel height. Copyright © 2013 Elsevier B.V. All rights reserved.

Airborne Lidar measurements of aerosols, mixed layer heights, and ozone during the 1980 PEPE/NEROS summer field experiment

NASA Technical Reports Server (NTRS)

Browell, E. V.; Shipley, S. T.; Butler, C. F.; Ismail, S.

1985-01-01

A detailed summary of the NASA Ultraviolet Differential Absorption Lidar (UV DIAL) data archive obtained during the EPA Persistent Elevated Pollution Episode/Northeast Regional Oxidant Study (PEPE/NEROS) Summer Field Experiment Program (July through August 1980) is presented. The UV dial data set consists of remote measurements of mixed layer heights, aerosol backscatter cross sections, and sequential ozone profiles taken during 14 long-range flights onboard the NASA Wallops Flight Center Electra aircraft. These data are presented in graphic and tabular form, and they have been submitted to the PEPE/NEROS data archive on digital magnetic tape. The derivation of mixing heights and ozone profiles from UV Dial signals is discussed, and detailed intercomparisons with measurements obtained by in situ sensors are presented.

Effects of observation heights and atmospheric wave evolution in sunspot seismology: a study using HMI and AIA (1600 A and 1700 A) data

NASA Astrophysics Data System (ADS)

Rajaguru, S. P.; Couvidaa, S.

2011-10-01

In achieving a high cadence and whole Sun coverage required of them, Doppler imagers such as HMI/SDO and MDI/SOHO necessarily forgo certain intricacies associated with magnetic and velocity field interactions, which require high (spectral) resolution spectropolarimetry for their accurate measurements with straightforward derivation of physical quantities (or observables). Magnetic field modified wave evolution, due to much reduced acoustic cut-off frequencies, in inclined field regions is one such situation. We first show, using a high cadence imaging spectropolarimetric observations made with IBIS instrument at NSO/Sac Peak, that significant contributions to seismically measured travel times arise from the line formation layers. We then present a comparative study of time-distance helioseismic measurements made over three sunspot regions using HMI and AIA (1600 A and 1700 A) data, which provide oscillation signals from three different heights. We bring out clear signals of height dependent wave phases and hence height dependent travel times. We further show that such signatures, from their differing contributions in one way travel times (in- or out-going wave travel times), could explain a significant part of the discrepancies between time-distance and other local helioseismic measurements and inferences.

Questing height of nymphs of the bush tick, Haemaphysalis longicornis, and its closely related species, H. mageshimaensis: correlation with body size of the host.

PubMed

Tsunoda, T; Tatsuzawa, S

2004-05-01

The questing height (i.e. ambush height) of ticks on a plant plays an important role in host selection. To test the hypothesis that the questing height of ticks in a locality had adapted to the body size of the host in that locality, we examined the questing height of nymphs of the ticks, Haemaphysalis longicornis and H. mageshimaensis, at 7 locations in Japan. Sika deer, Cervus nippon, is the primary host of these ticks and there is considerable geographical variation in the body size of sika deer. Multiple regression analysis revealed that the questing height in the field was influenced by the height of the plants and by the body size of deer at a location. However, the questing height of ticks at some locations may have been constrained by the height of the plants and might not be the same as their intrinsic questing height. When ticks were placed in vertical glass tubes in the laboratory, the questing height of ticks from a locality was correlated with the mean body size of deer at that locality. Therefore, the prominent cue determining the questing height of H. longicornis and H. mageshimaensis seems to be the body size of the host deer.

Selection of putative Terra Maranhão plantain cultivar mutants obtained by gamma radiation.

PubMed

Reis, R V; Amorim, E P; Ledo, C A S; Pestana, R K N; Gonçalves, Z S; Borém, A

2015-05-11

The aim of this study was to select putative Terra Maranhão plantain cultivar mutants obtained by gamma radiation, with good agronomic traits and short height. A total of 315 buds were irradiated in vitro with gamma rays in doses of 20 Gy and were subcultivated and evaluated in the field over 2 production cycles. The clones were evaluated to select the best 10% of the plants. Cultivation was undertaken at a spacing of 3 x 4 m, and fertilization was carried out according to the technical recommendations for the crop. A total of 111 irradiated plants and 41 controls were evaluated in the field. Among the irradiated plants selected, genotypes that exhibited reduced height were observed. The genotypes Irra 04, Irra 13, Irra 19, and Irra 21 exhibited a height of 3.6 m, which was below the mean value of the controls selected. Other irradiated genotypes selected such as Irra 14 and Irra 16, with a height of 3.65 m, are promising because, in addition to reduced height, they exhibited good bunch weight and shorter period to flowering in relation to the mean value of the controls, which is a significant factor for the next stages in breeding. These results confirm the possibility of inducing mutations in Terra type banana plants to obtain desirable agronomic traits and short height.

Investigation of the relationship between hurricane waves and extreme runup

NASA Astrophysics Data System (ADS)

Thompson, D. M.; Stockdon, H. F.

2006-12-01

In addition to storm surge, the elevation of wave-induced runup plays a significant role in forcing geomorphic change during extreme storms. Empirical formulations for extreme runup, defined as the 2% exceedence level, are dependent on some measure of significant offshore wave height. Accurate prediction of extreme runup, particularly during hurricanes when wave heights are large, depends on selecting the most appropriate measure of wave height that provides energy to the nearshore system. Using measurements from deep-water wave buoys results in an overprediction of runup elevation. Under storm forcing these large waves dissipate across the shelf through friction, whitecapping and depth-limited breaking before reaching the beach and forcing swash processes. The use of a local, shallow water wave height has been shown to provide a more accurate estimate of extreme runup elevation (Stockdon, et. al. 2006); however, a specific definition of this local wave height has yet to be defined. Using observations of nearshore waves from the U.S. Army Corps of Engineers' Field Research Facility (FRF) in Duck, NC during Hurricane Isabel, the most relevant measure of wave height for use in empirical runup parameterizations was examined. Spatial and temporal variability of the hurricane wave field, which made landfall on September 18, 2003, were modeled using SWAN. Comparisons with wave data from FRF gages and deep-water buoys operated by NOAA's National Data Buoy Center were used for model calibration. Various measures of local wave height (breaking, dissipation-based, etc.) were extracted from the model domain and used as input to the runup parameterizations. Video based observations of runup collected at the FRF during the storm were used to ground truth modeled values. Assessment of the most appropriate measure of wave height can be extended over a large area through comparisons to observations of storm- induced geomorphic change.

Wind-Induced Air-Flow Patterns in an Urban Setting: Observations and Numerical Modeling

NASA Astrophysics Data System (ADS)

Sattar, Ahmed M. A.; Elhakeem, Mohamed; Gerges, Bishoy N.; Gharabaghi, Bahram; Gultepe, Ismail

2018-04-01

City planning can have a significant effect on wind flow velocity patterns and thus natural ventilation. Buildings with different heights are roughness elements that can affect the near- and far-field wind flow velocity. This paper aims at investigating the impact of an increase in building height on the nearby velocity fields. A prototype urban setting of buildings with two different heights (25 and 62.5 cm) is built up and placed in a wind tunnel. Wind flow velocity around the buildings is mapped at different heights. Wind tunnel measurements are used to validate a 3D-numerical Reynolds averaged Naviers-Stokes model. The validated model is further used to calculate the wind flow velocity patterns for cases with different building heights. It was found that increasing the height of some buildings in an urban setting can lead to the formation of large horseshoe vortices and eddies around building corners. A separation area is formed at the leeward side of the building, and the recirculation of air behind the building leads to the formation of slow rotation vortices. The opposite effect is observed in the wake (cavity) region of the buildings, where both the cavity length and width are significantly reduced, and this resulted in a pronounced increase in the wind flow velocity. A significant increase in the wind flow velocity in the wake region of tall buildings with a value of up to 30% is observed. The spatially averaged velocities around short buildings also increased by 25% compared to those around buildings with different heights. The increase in the height of some buildings is found to have a positive effect on the wind ventilation at the pedestrian level.

Lightning Attachment to Wind Turbines in Central Kansas: Video Observations, Correlation with the NLDN and in-situ Peak Current Measurements

NASA Astrophysics Data System (ADS)

Myers, J.; Cummins, K. L.; Hutchinson, M.; Nag, A.

2012-12-01

Lightning attachment to tall objects has been studied for decades. The attachment of lightning to electric power transmission towers in elevated terrain has driven much of the quantitative assessment of lightning characteristics in the 1970's and 80's. This has led to the understanding that in flat terrain, the probability of upward-initiated lightning is negligible for tower heights less than 100 m. For tower heights greater than 100, the probability increases roughly linearly with the log of height, reaching 100% at a height of 400 m. Additionally, the probability of upward initiation increases when the object resides on locally-elevated terrain. Over the last decade, there has been renewed interest in the study of lightning attachment to tall objects in general, and wind turbines in particular, following the establishment of large "wind farms" in lightning-prone regions. In this study, we present video observations, radiation magnetic field, and in-situ peak current measurements of lightning from an ongoing field program in a large wind farm in north-central Kansas, located in the U.S. Central Great Plains. The terrain variations within the wind farm are small rolling hills with peak variations on the order of 25 m. All turbines had a turbine hub height of 80 m, and a blade tip maximum height of 125 m. Two digital video camera systems (60 fields-per-second) were configured to self-trigger 2-second video sequences using a sequential-field-subtraction scene analysis (ufo-Capture). The two cameras had a common field of view that included 8 of the wind turbines. Nearby NLDN sensors were configured to record information that allows reconstruction of magnetic field waveforms within the bandwidth of the NLDN sensors. Some of the turbines were equipped with semi-quantitative in-situ peak current measuring devices. To date, more than 100 cloud-to-ground (CG) flashes have terminated within the perimeter of the wind farm. Video observations of flashes that attached to turbines (all to turbine blades) include five natural (downward leader) flashes and two "upward flashes" (fully developed upward leaders lasting 10's of milliseconds). Both upward flashes appear to have been triggered by nearby positive CG flashes, resulting in upward (presumably positive) leaders. Selected video observations in conjunction with NLDN data and waveform measurements, and in situ current measurements obtained during this campaign, will be presented and discussed in the context of storm characteristics. Differences with previous findings for fixed towers (no rotating blades) will also be discussed.

Vorticity and Vertical Motions Diagnosed from Satellite Deep-Layer Temperatures. Revised

NASA Technical Reports Server (NTRS)

Spencer, Roy W.; Lapenta, William M.; Robertson, Franklin R.

1994-01-01

Spatial fields of satellite-measured deep-layer temperatures are examined in the context of quasigeostrophic theory. It is found that midtropospheric geostrophic vorticity and quasigeostrophic vertical motions can be diagnosed from microwave temperature measurements of only two deep layers. The lower- ( 1000-400 hPa) and upper- (400-50 hPa) layer temperatures are estimated from limb-corrected TIROS-N Microwave Sounding Units (MSU) channel 2 and 3 data, spatial fields of which can be used to estimate the midtropospheric thermal wind and geostrophic vorticity fields. Together with Trenberth's simplification of the quasigeostrophic omega equation, these two quantities can be then used to estimate the geostrophic vorticity advection by the thermal wind, which is related to the quasigeostrophic vertical velocity in the midtroposphere. Critical to the technique is the observation that geostrophic vorticity fields calculated from the channel 3 temperature features are very similar to those calculated from traditional, 'bottom-up' integrated height fields from radiosonde data. This suggests a lack of cyclone-scale height features near the top of the channel 3 weighting function, making the channel 3 cyclone-scale 'thickness' features approximately the same as height features near the bottom of the weighting function. Thus, the MSU data provide observational validation of the LID (level of insignificant dynamics) assumption of Hirshberg and Fritsch.

Testing simple deceptive honeypot tools

NASA Astrophysics Data System (ADS)

Yahyaoui, Aymen; Rowe, Neil C.

2015-05-01

Deception can be a useful defensive technique against cyber-attacks; it has the advantage of unexpectedness to attackers and offers a variety of tactics. Honeypots are a good tool for deception. They act as decoy computers to confuse attackers and exhaust their time and resources. This work tested the effectiveness of two free honeypot tools in real networks by varying their location and virtualization, and the effects of adding more deception to them. We tested a Web honeypot tool, Glastopf and an SSH honeypot tool Kippo. We deployed the Web honeypot in both a residential network and our organization's network and as both real and virtual machines; the organization honeypot attracted more attackers starting in the third week. Results also showed that the virtual honeypots received attacks from more unique IP addresses. They also showed that adding deception to the Web honeypot, in the form of additional linked Web pages and interactive features, generated more interest by attackers. For the purpose of comparison, we used examined log files of a legitimate Web-site www.cmand.org. The traffic distributions for the Web honeypot and the legitimate Web site showed similarities (with much malicious traffic from Brazil), but the SSH honeypot was different (with much malicious traffic from China). Contrary to previous experiments where traffic to static honeypots decreased quickly, our honeypots received increasing traffic over a period of three months. It appears that both honeypot tools are useful for providing intelligence about cyber-attack methods, and that additional deception is helpful.

Genomic comparison of the endophyte Herbaspirillum seropedicae SmR1 and the phytopathogen Herbaspirillum rubrisubalbicans M1 by suppressive subtractive hybridization and partial genome sequencing.

PubMed

Monteiro, Rose A; Balsanelli, Eduardo; Tuleski, Thalita; Faoro, Helison; Cruz, Leonardo M; Wassem, Roseli; de Baura, Valter A; Tadra-Sfeir, Michelle Z; Weiss, Vinícius; DaRocha, Wanderson D; Muller-Santos, Marcelo; Chubatsu, Leda S; Huergo, Luciano F; Pedrosa, Fábio O; de Souza, Emanuel M

2012-05-01

Herbaspirillum rubrisubalbicans M1 causes the mottled stripe disease in sugarcane cv. B-4362. Inoculation of this cultivar with Herbaspirillum seropedicae SmR1 does not produce disease symptoms. A comparison of the genomic sequences of these closely related species may permit a better understanding of contrasting phenotype such as endophytic association and pathogenic life style. To achieve this goal, we constructed suppressive subtractive hybridization (SSH) libraries to identify DNA fragments present in one species and absent in the other. In a parallel approach, partial genomic sequence from H. rubrisubalbicans M1 was directly compared in silico with the H. seropedicae SmR1 genome. The genomic differences between the two organisms revealed by SSH suggested that lipopolysaccharide and adhesins are potential molecular factors involved in the different phenotypic behavior. The cluster wss probably involved in cellulose biosynthesis was found in H. rubrisubalbicans M1. Expression of this gene cluster was increased in H. rubrisubalbicans M1 cells attached to the surface of maize root, and knockout of wssD gene led to decrease in maize root surface attachment and endophytic colonization. The production of cellulose could be responsible for the maize attachment pattern of H. rubrisubalbicans M1 that is capable of outcompeting H. seropedicae SmR1. © 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Listeners are maximally flexible in updating phonetic beliefs over time.

PubMed

Saltzman, David; Myers, Emily

2018-04-01

Perceptual learning serves as a mechanism for listenexrs to adapt to novel phonetic information. Distributional tracking theories posit that this adaptation occurs as a result of listeners accumulating talker-specific distributional information about the phonetic category in question (Kleinschmidt & Jaeger, 2015, Psychological Review, 122). What is not known is how listeners build these talker-specific distributions; that is, if they aggregate all information received over a certain time period, or if they rely more heavily upon the most recent information received and down-weight older, consolidated information. In the present experiment, listeners were exposed to four interleaved blocks of a lexical decision task and a phonetic categorization task in which the lexical decision blocks were designed to bias perception in opposite directions along a "s"-"sh" continuum. Listeners returned several days later and completed the identical task again. Evidence was consistent with listeners using a relatively short temporal window of integration at the individual session level. Namely, in each individual session, listeners' perception of a "s"-"sh" contrast was biased by the information in the immediately preceding lexical decision block, and there was no evidence that listeners summed their experience with the talker over the entire session. Similarly, the magnitude of the bias effect did not change between sessions, consistent with the idea that talker-specific information remains flexible, even after consolidation. In general, results suggest that listeners are maximally flexible when considering how to categorize speech from a novel talker.

FDTD Modeling of LEMP Propagation in the Earth-Ionosphere Waveguide With Emphasis on Realistic Representation of Lightning Source

NASA Astrophysics Data System (ADS)

Tran, Thang H.; Baba, Yoshihiro; Somu, Vijaya B.; Rakov, Vladimir A.

2017-12-01

The finite difference time domain (FDTD) method in the 2-D cylindrical coordinate system was used to compute the nearly full-frequency-bandwidth vertical electric field and azimuthal magnetic field waveforms produced on the ground surface by lightning return strokes. The lightning source was represented by the modified transmission-line model with linear current decay with height, which was implemented in the FDTD computations as an appropriate vertical phased-current-source array. The conductivity of atmosphere was assumed to increase exponentially with height, with different conductivity profiles being used for daytime and nighttime conditions. The fields were computed at distances ranging from 50 to 500 km. Sky waves (reflections from the ionosphere) were identified in computed waveforms and used for estimation of apparent ionospheric reflection heights. It was found that our model reproduces reasonably well the daytime electric field waveforms measured at different distances and simulated (using a more sophisticated propagation model) by Qin et al. (2017). Sensitivity of model predictions to changes in the parameters of atmospheric conductivity profile, as well as influences of the lightning source characteristics (current waveshape parameters, return-stroke speed, and channel length) and ground conductivity were examined.

The origin and development of extragalactic radio astronomy: the role of CSIRO's Division of Radiophysics Dover Heights Field Station in Sydney

NASA Astrophysics Data System (ADS)

Orchiston, Wayne; Robertson, Peter

2017-12-01

Initial post-war developments in non-solar radio astronomy were inspired by Hey, Phillips and Parson’s report in 1946 of an intense source of radio emission in Cygnus. This so-called ‘radio star’ was unique, and questions immediately were raised about its true nature. But it did not remain unique for long. Observing from Sydney, John Bolton, Gordon Stanley and Bruce Slee followed up the Cygnus discovery with more radio star detections, beginning what would evolve into a long-term multi-faceted research program and one of the mainstays of the CSIRO’s Division of Radiophysics. But more than this, these early discoveries in England and in Sydney opened up a whole new field of investigation, extragalactic radio astronomy, which has remained a major area of investigation through to the present day. This paper focusses on the early years of this program when the observations were carried out at Dover Heights Field Station in Sydney, and the ways in which new developments in instrumentation that allowed a major expansion of the program eventually led to the closure of Dover Heights and the founding of the Fleurs Field Station.

Tuning the electronic properties and Schottky barrier height of the vertical graphene/MoS2 heterostructure by an electric gating

NASA Astrophysics Data System (ADS)

Nguyen, Chuong V.

2018-04-01

In this paper, the electronic properties and Schottky contact in graphene/MoS2 (G/MoS2) heterostructure under an applied electric field are investigated by means of the density functional theory. It can be seen that the electronic properties of the G/MoS2 heterostructure are preserved upon contacting owing to the weak van der Waals interaction. We found that the n-type Schottky contact is formed in the G/MoS2 heterostructure with the Schottky barrier height of 0.49 eV. Furthermore, both Schottky contact and Schottky barrier height in the G/MoS2 heterostructure could be controlled by the applied electric field. If a positive electric field of 4 V/nm is applied to the system, a transformation from the n-type Schottky contact to the p-type one was observed, whereas the system keeps an n-type Schottky contact when a negative electric field is applied. Our results may provide helpful information to design, fabricate, and understand the physics mechanism in the graphene-based two-dimensional van der Waals heterostructures like as G/MoS2 heterostructure.

Sea level hazards: Altimetric monitoring of tsunamis and sea level rise

NASA Astrophysics Data System (ADS)

Hamlington, Benjamin Dillon

Whether on the short timescale of an impending tsunami or the much longer timescale of climate change-driven sea level rise, the threat stemming from rising and inundating ocean waters is a great concern to coastal populations. Timely and accurate observations of potentially dangerous changes in sea level are vital in determining the precautionary steps that need to be taken in order to protect coastal communities. While instruments from the past have provided in situ measurements of sea level at specific locations across the globe, satellites can be used to provide improved spatial and temporal sampling of the ocean in addition to producing more accurate measurements. Since 1993, satellite altimetry has provided accurate measurements of sea surface height (SSH) with near-global coverage. Not only have these measurements led to the first definitive estimates of global mean sea level rise, satellite altimetry observations have also been used to detect tsunami waves in the open ocean where wave amplitudes are relatively small, a vital step in providing early warning to those potentially affected by the impending tsunami. The use of satellite altimetry to monitor two specific sea level hazards is examined in this thesis. The first section will focus on the detection of tsunamis in the open ocean for the purpose of providing early warning to coastal inhabitants. The second section will focus on estimating secular trends using satellite altimetry data with the hope of improving our understanding of future sea level change. Results presented here will show the utility of satellite altimetry for sea level monitoring and will lay the foundation for further advancement in the detection of the two sea level hazards considered.

Eddy forced variations in on- and off-margin summertime circulation along the 1000-m isobath of the northern Gulf of Mexico, 2000-2003, and links with sperm whale distributions along the middle slope

NASA Astrophysics Data System (ADS)

Biggs, Douglas C.; Jochens, Ann E.; Howard, Matthew K.; DiMarco, Steven F.; Mullin, Keith D.; Leben, Robert R.; Muller-Karger, Frank E.; Hu, Chuanmin

In summers 2000-2003, NOAA Ship Gordon Gunter and TAMU R/V Gyre dropped XBTs and logged ADCP data while carrying out visual and passive-acoustic surveys for sperm whales along the 1000-m isobath of the northern Gulf of Mexico. The ships also made CTD casts, particularly when/where the XBT and ADCP data indicated the ships were passing into or out of anticyclonic and/or cyclonic slope eddies. The fine-scale resolution of the ship surveys, when combined with the meso-scale resolution of remote sensing surveys of sea surface height and ocean color, document the summer-to-summer variability in the intensity and geographic location of Loop Current eddies, warm slope eddies, and areas of cyclonic circulation over this middle slope region of the northern Gulf of Mexico. These variations forced striking year-to-year differences in the locations along the 1000-m isobath where there was on-margin and off-margin flow, and in locations where sperm whales were encountered along the 1000-m isobath. For example, when there was on-margin flow into the Mississippi Canyon region in early summer 2003, sperm whales were very rarely seen or heard there. In contrast, later that summer and during other summers when flow was along-margin or off-margin there, sperm whales were locally abundant. In this report we describe how eddy-forced variations in on-margin and off-margin flow changed the meso-scale circulation along the 1000-m isobath, and we show that most sperm whales were encountered in regions of negative SSH and/or higher-than-average surface chlorophyll.

Thick Disks in the Hubble Space Telescope Frontier Fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elmegreen, Bruce G.; Elmegreen, Debra Meloy; Tompkins, Brittany

Thick disk evolution is studied using edge-on galaxies in two Hubble Space Telescope Frontier Field Parallels. The galaxies were separated into 72 clumpy types and 35 spiral types with bulges. Perpendicular light profiles in F435W, F606W, and F814W ( B , V , and I ) passbands were measured at 1 pixel intervals along the major axes and fitted to sech{sup 2} functions convolved with the instrument line spread function (LSF). The LSF was determined from the average point spread function of ∼20 stars in each passband and field, convolved with a line of uniform brightness to simulate disk blurring.more » A spread function for a clumpy disk was also used for comparison. The resulting scale heights were found to be proportional to galactic mass, with the average height for a 10{sup 10±0.5} M {sub ⊙} galaxy at z = 2 ± 0.5 equal to 0.63 ± 0.24 kpc. This value is probably the result of a blend between thin and thick disk components that cannot be resolved. Evidence for such two-component structure is present in an inverse correlation between height and midplane surface brightness. Models suggest that the thick disk is observed best between the clumps, and there the average scale height is 1.06 ± 0.43 kpc for the same mass and redshift. A 0.63 ± 0.68 mag V − I color differential with height is also evidence for a mixture of thin and thick components.« less

Comparing the accuracy of terrestrial laser scanner in measuring forest inventory variables to enhance better decision making for potential fire hazards

NASA Astrophysics Data System (ADS)

Ghimire, Suman; Xystrakis, Fotios; Koutsias, Nikos

2017-04-01

Forest inventory variables are essential in accessing the potential of wildfire hazard, obtaining above ground biomass and carbon sequestration which helps developing strategies for sustainable management of forests. Effective management of forest resources relies on the accuracy of such inventory variables. This study aims to compare the accuracy in obtaining the forest inventory variables like diameter at breast height (DBH) and tree height from Terrestrial Laser Scanner (Faro Focus 3D X 330) with that from the traditional forest inventory techniques in the Mediterranean forests of Greece. The data acquisition was carried out on an area of 9,539.8 m2 with six plots each of radius 6 m. Computree algorithm was applied for automatic detection of DBH from terrestrial laser scanner data. Similarly, tree height was estimated manually using CloudCompare software for the terrestrial laser scanner data. The field estimates of DBH and tree height was carried out using calipers and Nikon Forestry 550 Laser Rangefinder. The comparison of DBH measured between field estimates and Terrestrial Laser Scanner (TLS), resulted in R squared values ranging from 0.75 to 0.96 at the plot level. An average R2 and RMSE value of 0.80 and 1.07 m respectively was obtained when comparing the tree height between TLS and field data. Our results confirm that terrestrial laser scanner can provide nondestructive, high-resolution, and precise determination of forest inventory for better decision making in sustainable forest management and assessing potential of forest fire hazards.

Spatio-temporal evaluation of plant height in corn via unmanned aerial systems

NASA Astrophysics Data System (ADS)

Varela, Sebastian; Assefa, Yared; Vara Prasad, P. V.; Peralta, Nahuel R.; Griffin, Terry W.; Sharda, Ajay; Ferguson, Allison; Ciampitti, Ignacio A.

2017-07-01

Detailed spatial and temporal data on plant growth are critical to guide crop management. Conventional methods to determine field plant traits are intensive, time-consuming, expensive, and limited to small areas. The objective of this study was to examine the integration of data collected via unmanned aerial systems (UAS) at critical corn (Zea mays L.) developmental stages for plant height and its relation to plant biomass. The main steps followed in this research were (1) workflow development for an ultrahigh resolution crop surface model (CSM) with the goal of determining plant height (CSM-estimated plant height) using data gathered from the UAS missions; (2) validation of CSM-estimated plant height with ground-truthing plant height (measured plant height); and (3) final estimation of plant biomass via integration of CSM-estimated plant height with ground-truthing stem diameter data. Results indicated a correlation between CSM-estimated plant height and ground-truthing plant height data at two weeks prior to flowering and at flowering stage, but high predictability at the later growth stage. Log-log analysis on the temporal data confirmed that these relationships are stable, presenting equal slopes for both crop stages evaluated. Concluding, data collected from low-altitude and with a low-cost sensor could be useful in estimating plant height.

Automated lidar-derived canopy height estimates for the Upper Mississippi River System

USGS Publications Warehouse

Hlavacek, Enrika

2015-01-01

Land cover/land use (LCU) classifications serve as important decision support products for researchers and land managers. The LCU classifications produced by the U.S. Geological Survey’s Upper Midwest Environmental Sciences Center (UMESC) include canopy height estimates that are assigned through manual aerial photography interpretation techniques. In an effort to improve upon these techniques, this project investigated the use of high-density lidar data for the Upper Mississippi River System to determine canopy height. An ArcGIS tool was developed to automatically derive height modifier information based on the extent of land cover features for forest classes. The measurement of canopy height included a calculation of the average height from lidar point cloud data as well as the inclusion of a local maximum filter to identify individual tree canopies. Results were compared to original manually interpreted height modifiers and to field survey data from U.S. Forest Service Forest Inventory and Analysis plots. This project demonstrated the effectiveness of utilizing lidar data to more efficiently assign height modifier attributes to LCU classifications produced by the UMESC.

Soft computing methods for geoidal height transformation

NASA Astrophysics Data System (ADS)

Akyilmaz, O.; Özlüdemir, M. T.; Ayan, T.; Çelik, R. N.

2009-07-01

Soft computing techniques, such as fuzzy logic and artificial neural network (ANN) approaches, have enabled researchers to create precise models for use in many scientific and engineering applications. Applications that can be employed in geodetic studies include the estimation of earth rotation parameters and the determination of mean sea level changes. Another important field of geodesy in which these computing techniques can be applied is geoidal height transformation. We report here our use of a conventional polynomial model, the Adaptive Network-based Fuzzy (or in some publications, Adaptive Neuro-Fuzzy) Inference System (ANFIS), an ANN and a modified ANN approach to approximate geoid heights. These approximation models have been tested on a number of test points. The results obtained through the transformation processes from ellipsoidal heights into local levelling heights have also been compared.

Influence of channel base current and varying return stroke speed on the calculated fields of three important return stroke models

NASA Technical Reports Server (NTRS)

Thottappillil, Rajeev; Uman, Martin A.; Diendorfer, Gerhard

1991-01-01

Compared here are the calculated fields of the Traveling Current Source (TCS), Modified Transmission Line (MTL), and the Diendorfer-Uman (DU) models with a channel base current assumed in Nucci et al. on the one hand and with the channel base current assumed in Diendorfer and Uman on the other hand. The characteristics of the field wave shapes are shown to be very sensitive to the channel base current, especially the field zero crossing at 100 km for the TCS and DU models, and the magnetic hump after the initial peak at close range for the TCS models. Also, the DU model is theoretically extended to include any arbitrarily varying return stroke speed with height. A brief discussion is presented on the effects of an exponentially decreasing speed with height on the calculated fields for the TCS, MTL, and DU models.

Nomarski imaging interferometry to measure the displacement field of micro-electro-mechanical systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amiot, Fabien; Roger, Jean Paul

2006-10-20

We propose to use a Nomarski imaging interferometer to measure the out-of-plane displacement field of micro-electro-mechanical systems. It is shown that the measured optical phase arises from both height and slope gradients. By using four integrating buckets, a more efficient approach to unwrap the measured phase is presented,thus making the method well suited for highly curved objects. Slope and height effects are then decoupled by expanding the displacement field on a functions basis, and the inverse transformation is applied to get a displacement field from a measured optical phase map change with a mechanical loading. A measurement reproducibility of approximatelymore » 10 pm is achieved, and typical results are shown on a microcantilever under thermal actuation, thereby proving the ability of such a setup to provide a reliable full-field kinematic measurement without surface modification.« less

Fluid Flow and Mass Transfer in Micro/Nano-Channels

NASA Astrophysics Data System (ADS)

Conlisk, A. T.; McFerran, Jennifer; Hansford, Derek; Zheng, Zhi

2001-11-01

In this work the fluid flow and mass transfer due to the presence of an electric field in a rectangular channel is examined. We consider a mixture of water or other neutral solvent and a salt compound such as sodium chloride for which the ionic species are entirely dissociated. Results are produced for the case where the channel height is much greater than the electric double layer(EDL)(microchannel) and for the case where the channel height is of the order or somewhat greater than the width of the EDL(nanochannel). For the electroosmotic flow so induced, the velocity field and the potential are similar. The fluid is assumed to behave as a continuum and the Boltzmann distribution for the mole fractions of the ions emerges from the classical dilute mass transfer equation in the limiting case where the EDL thickness is much less than the channel height. Depending on the relative magnitude of the mole fractions at the walls of the channel, both forward and reversed flow may occur. The volume flow rate is observed to vary linearly with channel height for electrically driven flow in contrast to pressure driven flow which varies as height cubed. This means that power requirements for small channels are much greater for pressure driven flow. Supported by DARPA

Validation of an inertial measurement unit for the measurement of jump count and height.

PubMed

MacDonald, Kerry; Bahr, Roald; Baltich, Jennifer; Whittaker, Jackie L; Meeuwisse, Willem H

2017-05-01

To validate the use of an inertial measurement unit (IMU) for the collection of total jump count and assess the validity of an IMU for the measurement of jump height against 3-D motion analysis. Cross sectional validation study. 3D motion-capture laboratory and field based settings. Thirteen elite adolescent volleyball players. Participants performed structured drills, played a 4 set volleyball match and performed twelve counter movement jumps. Jump counts from structured drills and match play were validated against visual count from recorded video. Jump height during the counter movement jumps was validated against concurrent 3-D motion-capture data. The IMU device captured more total jumps (1032) than visual inspection (977) during match play. During structured practice, device jump count sensitivity was strong (96.8%) while specificity was perfect (100%). The IMU underestimated jump height compared to 3D motion-capture with mean differences for maximal and submaximal jumps of 2.5 cm (95%CI: 1.3 to 3.8) and 4.1 cm (3.1-5.1), respectively. The IMU offers a valid measuring tool for jump count. Although the IMU underestimates maximal and submaximal jump height, our findings demonstrate its practical utility for field-based measurement of jump load. Copyright © 2016 Elsevier Ltd. All rights reserved.

47 CFR 73.160 - Vertical plane radiation characteristics, f(θ).

Code of Federal Regulations, 2011 CFR

2011-10-01

..., f(θ). (a) The vertical plane radiation characteristics show the relative field being radiated at a... the electrical height of the tower, not including the base insulator and pier. (In the case of a folded unipole tower, the entire radiating structure's electrical height is used.) (2) For a top-loaded...

Experimental investigation of five parallel plane jets with variation of Reynolds number and outlet conditions

NASA Astrophysics Data System (ADS)

Daubner, Tomas; Kizhofer, Jens; Dinulescu, Mircea

2018-06-01

This article describes an experimental investigation in the near field of five parallel plane jets. The study applies 2D Particle Image Velocimetry (PIV) for ventilated and unventilated jets, where ventilated means exiting into a duct with expansion ratio 3.5 and unventilated means exiting to the free atmosphere. Results are presented for Reynolds numbers 1408, 5857 and 10510. The Reynolds number is calculated for the middle channel and is based on the height of the nozzle (channel) equivalent diameter 2h. All characteristic regions of the methodology to describe multiple interacting jets are observed by the PIV measurements - converging, merging and combined. Each of the five parallel channels has an aspect ratio of 25 defined as nozzle width (w) to height (h). The channels have a length of 185 times the channel height guaranteeing a fully developed velocity profile at the exit from the channel. Spacing between the single plane jets is 3 times the channel height. The near field of multiple mixing jets is depended on outlet nozzle geometry. Blunt geometry of the nozzle was chosen (sudden contraction).

Strategic guidelines for street canyon geometry to achieve sustainable street air quality—part II: multiple canopies and canyons

NASA Astrophysics Data System (ADS)

Chan, Andy T.; Au, William T. W.; So, Ellen S. P.

The flow field and pollutant dispersion characteristics in a three-dimensional urban street canyon are investigated for various building array geometries. The street canyon in consideration is located in a multi-canopy building array that is similar to realistic estate situations. The pollutant dispersion characteristics are studied for various canopy aspect ratios, namely: the canyon height to width ratio, canyon length to height ratio, canyon breadth ratio and crossroad locations are studied. A three-dimensional field-size canyon has been analysed through numerical simulations using k- ɛ turbulence model. As expected, the wind flow and mode of pollutant dispersion is strongly dependent on the various flow geometric configurations and that the results can be different from that of a single canyon system. For example, it is found that the pollutant retention value is minimum when the canyon height-to-width ratio is approximately 0.8, or that the building height ratio is 0.5. Various rules of thumbs on urban canyon geometry have been established for good pollutant dispersion.

Microgravity Geyser and Flow Field Prediction

NASA Technical Reports Server (NTRS)

Hochstein, J. I.; Marchetta, J. G.; Thornton, R. J.

2006-01-01

Modeling and prediction of flow fields and geyser formation in microgravity cryogenic propellant tanks was investigated. A computational simulation was used to reproduce the test matrix of experimental results performed by other investigators, as well as to model the flows in a larger tank. An underprediction of geyser height by the model led to a sensitivity study to determine if variations in surface tension coefficient, contact angle, or jet pipe turbulence significantly influence the simulations. It was determined that computational geyser height is not sensitive to slight variations in any of these items. An existing empirical correlation based on dimensionless parameters was re-examined in an effort to improve the accuracy of geyser prediction. This resulted in the proposal for a re-formulation of two dimensionless parameters used in the correlation; the non-dimensional geyser height and the Bond number. It was concluded that the new non-dimensional geyser height shows little promise. Although further data will be required to make a definite judgement, the reformulation of the Bond number provided correlations that are more accurate and appear to be more general than the previously established correlation.

An alternative method for calibration of flow field flow fractionation channels for hydrodynamic radius determination: The nanoemulsion method (featuring multi angle light scattering).

PubMed

Bolinsson, Hans; Lu, Yi; Hall, Stephen; Nilsson, Lars; Håkansson, Andreas

2018-01-19

This study suggests a novel method for determination of the channel height in asymmetrical flow field-flow fractionation (AF4), which can be used for calibration of the channel for hydrodynamic radius determinations. The novel method uses an oil-in-water nanoemulsion together with multi angle light scattering (MALS) and elution theory to determine channel height from an AF4 experiment. The method is validated using two orthogonal methods; first, by using standard particle elution experiments and, secondly, by imaging an assembled and carrier liquid filled channel by x-ray computed tomography (XCT). It is concluded that the channel height can be determined with approximately the same accuracy as with the traditional channel height determination technique. However, the nanoemulsion method can be used under more challenging conditions than standard particles, as the nanoemulsion remains stable in a wider pH range than the previously used standard particles. Moreover, the novel method is also more cost effective. Copyright © 2017 Elsevier B.V. All rights reserved.

A single field of view method for retrieving tropospheric temperature profiles from cloud-contaminated radiance data

NASA Technical Reports Server (NTRS)

Hodges, D. B.

1976-01-01

An iterative method is presented to retrieve single field of view (FOV) tropospheric temperature profiles directly from cloud-contaminated radiance data. A well-defined temperature profile may be calculated from the radiative transfer equation (RTE) for a partly cloudy atmosphere when the average fractional cloud amount and cloud-top height for the FOV are known. A cloud model is formulated to calculate the fractional cloud amount from an estimated cloud-top height. The method is then examined through use of simulated radiance data calculated through vertical integration of the RTE for a partly cloudy atmosphere using known values of cloud-top height(s) and fractional cloud amount(s). Temperature profiles are retrieved from the simulated data assuming various errors in the cloud parameters. Temperature profiles are retrieved from NOAA-4 satellite-measured radiance data obtained over an area dominated by an active cold front and with considerable cloud cover and compared with radiosonde data. The effects of using various guessed profiles and the number of iterations are considered.

Quantifying vegetation distribution and structure using high resolution drone-based structure-from-motion photogrammetry

NASA Astrophysics Data System (ADS)

Zhang, J.; Okin, G.

2017-12-01

Vegetation is one of the most important driving factors of different ecosystem processes in drylands. The structure of vegetation controls the spatial distribution of moisture and heat in the canopy and the surrounding area. Also, the structure of vegetation influences both airflow and boundary layer resistance above the land surface. Multispectral satellite remote sensing has been widely used to monitor vegetation coverage and its change; however, it can only capture 2D images, which do not contain the vertical information of vegetation. In situ observation uses different methods to measure the structure of vegetation, and their results are accurate; however, these methods are laborious and time-consuming, and susceptible to undersampling in spatial heterogeneity. Drylands are sparsely covered by short plants, which allows the drone fly at a relatively low height to obtain ultra-high resolution images. Structure-from-motion (SfM) is a photogrammetric method that was proved to produce 3D model based on 2D images. Drone-based remote sensing can obtain the multiangle images for one object, which can be used to constructed 3D models of vegetation in drylands. Using these images detected by the drone, the orthomosaics and digital surface model (DSM) can be built. In this study, the drone-based remote sensing was conducted in Jornada Basin, New Mexico, in the spring of 2016 and 2017, and three derived vegetation parameters (i.e., canopy size, bare soil gap size, and plant height) were compared with those obtained with field measurement. The correlation coefficient of canopy size, bare soil gap size, and plant height between drone images and field data are 0.91, 0.96, and 0.84, respectively. The two-year averaged root-mean-square error (RMSE) of canopy size, bare soil gap size, and plant height between drone images and field data are 0.61 m, 1.21 m, and 0.25 cm, respectively. The two-year averaged measure error (ME) of canopy size, bare soil gap size, and plant height between drone images and field data are 0.02 m, -0.03, and -0.1 m, respectively. These results indicate a good agreement between drone-based remote sensing and field measurement.

Polarimetric SAR Interferometry based modeling for tree height and aboveground biomass retrieval in a tropical deciduous forest

NASA Astrophysics Data System (ADS)

Kumar, Shashi; Khati, Unmesh G.; Chandola, Shreya; Agrawal, Shefali; Kushwaha, Satya P. S.

2017-08-01

The regulation of the carbon cycle is a critical ecosystem service provided by forests globally. It is, therefore, necessary to have robust techniques for speedy assessment of forest biophysical parameters at the landscape level. It is arduous and time taking to monitor the status of vast forest landscapes using traditional field methods. Remote sensing and GIS techniques are efficient tools that can monitor the health of forests regularly. Biomass estimation is a key parameter in the assessment of forest health. Polarimetric SAR (PolSAR) remote sensing has already shown its potential for forest biophysical parameter retrieval. The current research work focuses on the retrieval of forest biophysical parameters of tropical deciduous forest, using fully polarimetric spaceborne C-band data with Polarimetric SAR Interferometry (PolInSAR) techniques. PolSAR based Interferometric Water Cloud Model (IWCM) has been used to estimate aboveground biomass (AGB). Input parameters to the IWCM have been extracted from the decomposition modeling of SAR data as well as PolInSAR coherence estimation. The technique of forest tree height retrieval utilized PolInSAR coherence based modeling approach. Two techniques - Coherence Amplitude Inversion (CAI) and Three Stage Inversion (TSI) - for forest height estimation are discussed, compared and validated. These techniques allow estimation of forest stand height and true ground topography. The accuracy of the forest height estimated is assessed using ground-based measurements. PolInSAR based forest height models showed enervation in the identification of forest vegetation and as a result height values were obtained in river channels and plain areas. Overestimation in forest height was also noticed at several patches of the forest. To overcome this problem, coherence and backscatter based threshold technique is introduced for forest area identification and accurate height estimation in non-forested regions. IWCM based modeling for forest AGB retrieval showed R2 value of 0.5, RMSE of 62.73 (t ha-1) and a percent accuracy of 51%. TSI based PolInSAR inversion modeling showed the most accurate result for forest height estimation. The correlation between the field measured forest height and the estimated tree height using TSI technique is 62% with an average accuracy of 91.56% and RMSE of 2.28 m. The study suggested that PolInSAR coherence based modeling approach has significant potential for retrieval of forest biophysical parameters.

Numerical modelling of flow structures over idealized transverse aeolian dunes of varying geometry

NASA Astrophysics Data System (ADS)

Parsons, Daniel R.; Walker, Ian J.; Wiggs, Giles F. S.

2004-04-01

A Computational Fluid Dynamics (CFD) model (PHOENICS™ 3.5) previously validated for wind tunnel measurements is used to simulate the streamwise and vertical velocity flow fields over idealized transverse dunes of varying height ( h) and stoss slope basal length ( L). The model accurately reproduced patterns of: flow deceleration at the dune toe; stoss flow acceleration; vertical lift in the crest region; lee-side flow separation, re-attachment and reversal; and flow recovery distance. Results indicate that the flow field over transverse dunes is particularly sensitive to changes in dune height, with an increase in height resulting in flow deceleration at the toe, streamwise acceleration and vertical lift at the crest, and an increase in the extent of, and strength of reversed flows within, the lee-side separation cell. In general, the length of the separation zone varied from 3 to 15 h from the crest and increased over taller, steeper dunes. Similarly, the flow recovery distance ranged from 45 to >75 h and was more sensitive to changes in dune height. For the range of dune shapes investigated in this study, the differing effects of height and stoss slope length raise questions regarding the applicability of dune aspect ratio as a parameter for explaining airflow over transverse dunes. Evidence is also provided to support existing research on: streamline curvature and the maintenance of sand transport in the toe region; vertical lift in the crest region and its effect on grainfall delivery; relations between the turbulent shear layer and downward forcing of flow re-attachment; and extended flow recovery distances beyond the separation cell. Field validation is required to test these findings in natural settings. Future applications of the model will characterize turbulence and shear stress fields, examine the effects of more complex isolated dune forms and investigate flow over multiple dunes.

A contrastive study on the influences of radial and three-dimensional satellite gravity gradiometry on the accuracy of the Earth's gravitational field recovery

NASA Astrophysics Data System (ADS)

Zheng, Wei; Hsu, Hou-Tse; Zhong, Min; Yun, Mei-Juan

2012-10-01

The accuracy of the Earth's gravitational field measured from the gravity field and steady-state ocean circulation explorer (GOCE), up to 250 degrees, influenced by the radial gravity gradient Vzz and three-dimensional gravity gradient Vij from the satellite gravity gradiometry (SGG) are contrastively demonstrated based on the analytical error model and numerical simulation, respectively. Firstly, the new analytical error model of the cumulative geoid height, influenced by the radial gravity gradient Vzz and three-dimensional gravity gradient Vij are established, respectively. In 250 degrees, the GOCE cumulative geoid height error measured by the radial gravity gradient Vzz is about 2½ times higher than that measured by the three-dimensional gravity gradient Vij. Secondly, the Earth's gravitational field from GOCE completely up to 250 degrees is recovered using the radial gravity gradient Vzz and three-dimensional gravity gradient Vij by numerical simulation, respectively. The study results show that when the measurement error of the gravity gradient is 3 × 10-12/s2, the cumulative geoid height errors using the radial gravity gradient Vzz and three-dimensional gravity gradient Vij are 12.319 cm and 9.295 cm at 250 degrees, respectively. The accuracy of the cumulative geoid height using the three-dimensional gravity gradient Vij is improved by 30%-40% on average compared with that using the radial gravity gradient Vzz in 250 degrees. Finally, by mutual verification of the analytical error model and numerical simulation, the orders of magnitude from the accuracies of the Earth's gravitational field recovery make no substantial differences based on the radial and three-dimensional gravity gradients, respectively. Therefore, it is feasible to develop in advance a radial cold-atom interferometric gradiometer with a measurement accuracy of 10-13/s2-10-15/s2 for precisely producing the next-generation GOCE Follow-On Earth gravity field model with a high spatial resolution.

Spatiotemporal Variability in Observations of Urban Mixed-Layer Heights from Surface-based Lidar Systems during DISCOVER-AQ 2011

NASA Astrophysics Data System (ADS)

Lewis, J. R.; Banks, R. F.; Berkoff, T.; Welton, E. J.; Joseph, E.; Thompson, A. M.; Decola, P.; Hegarty, J. D.

2015-12-01

Accurate characterization of the planetary boundary layer height is crucial for numerical weather prediction, estimating pollution emissions and modeling air quality. More so, given the increasing trend in global urban populations, there is a growing need to improve our understanding of the urban boundary layer structure and development. The Deriving Information on Surface conditions from COlumn and VERtically resolved observations relevant to Air Quality (DISCOVER-AQ) 2011 field campaign, which took place in the Baltimore-Washington DC region, offered a unique opportunity to study boundary layer processes in an urban area using a geographically dense collection of surface-based lidar systems (see figure). Lidars use aerosols as tracers for atmospheric boundary layer dynamics with high vertical and temporal resolutions. In this study, we use data from two permanent Micropulse Lidar Network (MPLNET) sites and five field deployed Micropulse lidar (MPL) systems in order to observe spatiotemporal variations in the daytime mixed layer height. We present and compare lidar-derived retrievals of the mixed layer height using two different methods. The first method uses the wavelet covariance transform and a "fuzzy logic" attribution scheme in order to determine the mixed layer height. The second method uses an objective approach utilizing a time-adaptive extended Kalman filter. Independent measurements of the boundary layer height are obtained using profiles from ozonesonde launches at the Beltsville and Edgewood sites for comparison with lidar observations.

Proceedings of the Zel’Dovich Memorial International Conference on Combustion, Detonation, Shock Waves Held in Moscow, Russia on 12-17 September 1994. Volume 2

DTIC Science & Technology

1994-09-17

spin propagation theory [4]. Usual In(p/Po assumptions concerning homogeneity I of the reacting medium with respect 16. mto the diffusion processes and... higher temperatures was made using Schwarts-Slawsky-Herzfeld (SSH) theory which takes into account nonadiabatic collisions. It has been shown that, at T...with the Zel’dovich-Frank-Kamnenetskii theory , developed in late 30s Assovskii offers the review of current studies of ignition and extinction of

Bird use of agricultural fields under reduced and conventional tillage in the Texas Panhandle

USGS Publications Warehouse

Flickinger, Edward L.; Pendleton, G.W.

1994-01-01

We conducted bird surveys in reduced-tillage and conventional tillage fields in spring, summer, fall, and winter from 1987 to 1991 in the Texas Panhandle. Eastern meadowlarks, longspurs, and savannah sparrows were more common in reduced-tillage (sorghum and wheat stubble) fields than in conventionally tilled (plowed) fields in at least 1 season. Other species also had patterns suggestive of greater abundance in reduced-tillage fields. Hornedlarks, which prefer habitat with sparse vegetation, were more abundant in plowed fields in all seasons except summer. Bird diversity was greater in reduced-tillage fields than in conventionally tilled fields in summer. Cover density and height were greater in reduced tillage fields in all seasons except spring. Cover density and height rather than cover composition (e.g.,grain stubble or live plants) seemed to be the important factors affecting bird distribution. Patterns of bird abundance between sorghum and wheat stubble fields also were dependent on cover. Herbicide use was not greater in reduced-tillage fields than in conventionally tilled fields. Reduced-tillage agriculture for sorghum and wheat farming should be encouraged in the southern Great Plains as a means of improving the attractiveness of agricultural land to many bird species.

Oregon Washington Coastal Ocean Forecast System: Real-time Modeling and Data Assimilation

NASA Astrophysics Data System (ADS)

Erofeeva, S.; Kurapov, A. L.; Pasmans, I.

2016-02-01

Three-day forecasts of ocean currents, temperature and salinity along the Oregon and Washington coasts are produced daily by a numerical ROMS-based ocean circulation model. NAM is used to derive atmospheric forcing for the model. Fresh water discharge from Columbia River, Fraser River, and small rivers in Puget Sound are included. The forecast is constrained by open boundary conditions derived from the global Navy HYCOM model and once in 3 days assimilation of recent data, including HF radar surface currents, sea surface temperature from the GOES satellite, and SSH from several satellite altimetry missions. 4-dimensional variational data assimilation is implemented in 3-day time windows using the tangent linear and adjoint codes developed at OSU. The system is semi-autonomous - all the data, including NAM and HYCOM fields are automatically updated, and daily operational forecast is automatically initiated. The pre-assimilation data quality control and post-assimilation forecast quality control require the operator's involvement. The daily forecast and 60 days of hindcast fields are available for public on opendap. As part of the system model validation plots to various satellites and SEAGLIDER are also automatically updated and available on the web (http://ingria.coas.oregonstate.edu/rtdavow/). Lessons learned in this pilot real-time coastal ocean forecasting project help develop and test metrics for forecast skill assessment for the West Coast Operational Forecast System (WCOFS), currently at testing and development phase at the National Oceanic and Atmospheric Administration (NOAA).

Effect of Scintillometer Height on Structure Parameter of the Refractive Index of Air Measurements

NASA Astrophysics Data System (ADS)

Gowda, P. H.; Howell, T. A.; Hartogensis, O.; Basu, S.; Scanlon, B. R.

2009-12-01

Scintillometers measure amount of scintillations by emitting a beam of light over a horizontal path and expresses as the atmospheric turbulence structure parameter as the refractive index of air (Cn2). Cn2 represents the turbulent strength of the atmosphere and describes the ability of the atmosphere to transport heat and humidity. The main objective of this study was to evaluate the effect of scintillometer height on Cn2 measurements and on the estimation of latent heat fluxes. The study was conducted during the 2009 summer growing season in the USDA-ARS Conservation and Production Research Laboratory (CPRL) at Bushland [350 11' N, 1020 06' W; 1,170 m elevation MSL], Texas. Field experiment consisted of two steps: (1) cross-calibration of scintillometers and (2) measurement of Cn2 at different heights. In the first step, three large aperture scintillometers (LAS) were deployed across two large lysimeter fields with bare soil surfaces. During the 3-week cross-calibration period, all three scintillometers were installed at a 2-m height with a path length of 420 m. Cn2 was monitored at a 1-min interval and averaged for 15-min periods. Cn2 measurements were synchronized with weather station and weighing lysimeter measurements. After the cross-calibration period, scintillometers were installed at 2-, 2.5- and 3-m heights, and Cn2 measurements were continued for another 3-week period. In addition to the Cn2 measurements, net radiation (Rn) and soil heat fluxes (G) were measured in both lysimeter fields. Cn2 values were corrected for inner scale dependence before cross calibration and estimation of sensible heat fluxes. Measurements of wind speed, air temperature, and relative humidity were used with Cn2 data to derive sensible heat fluxes. Latent heat fluxes were estimated as a residual from the energy balance and compared with lysimeter data. Results of cross calibration and effects of scintillometer height on the estimation of latent heat fluxes were reported and discussed.

The Effectiveness, Costs and Coastal Protection Benefits of Natural and Nature-Based Defences.

PubMed

Narayan, Siddharth; Beck, Michael W; Reguero, Borja G; Losada, Iñigo J; van Wesenbeeck, Bregje; Pontee, Nigel; Sanchirico, James N; Ingram, Jane Carter; Lange, Glenn-Marie; Burks-Copes, Kelly A

2016-01-01

There is great interest in the restoration and conservation of coastal habitats for protection from flooding and erosion. This is evidenced by the growing number of analyses and reviews of the effectiveness of habitats as natural defences and increasing funding world-wide for nature-based defences-i.e. restoration projects aimed at coastal protection; yet, there is no synthetic information on what kinds of projects are effective and cost effective for this purpose. This paper addresses two issues critical for designing restoration projects for coastal protection: (i) a synthesis of the costs and benefits of projects designed for coastal protection (nature-based defences) and (ii) analyses of the effectiveness of coastal habitats (natural defences) in reducing wave heights and the biophysical parameters that influence this effectiveness. We (i) analyse data from sixty-nine field measurements in coastal habitats globally and examine measures of effectiveness of mangroves, salt-marshes, coral reefs and seagrass/kelp beds for wave height reduction; (ii) synthesise the costs and coastal protection benefits of fifty-two nature-based defence projects and; (iii) estimate the benefits of each restoration project by combining information on restoration costs with data from nearby field measurements. The analyses of field measurements show that coastal habitats have significant potential for reducing wave heights that varies by habitat and site. In general, coral reefs and salt-marshes have the highest overall potential. Habitat effectiveness is influenced by: a) the ratios of wave height-to-water depth and habitat width-to-wavelength in coral reefs; and b) the ratio of vegetation height-to-water depth in salt-marshes. The comparison of costs of nature-based defence projects and engineering structures show that salt-marshes and mangroves can be two to five times cheaper than a submerged breakwater for wave heights up to half a metre and, within their limits, become more cost effective at greater depths. Nature-based defence projects also report benefits ranging from reductions in storm damage to reductions in coastal structure costs.

Ocean Wave Simulation Based on Wind Field

PubMed Central

2016-01-01

Ocean wave simulation has a wide range of applications in movies, video games and training systems. Wind force is the main energy resource for generating ocean waves, which are the result of the interaction between wind and the ocean surface. While numerous methods to handle simulating oceans and other fluid phenomena have undergone rapid development during the past years in the field of computer graphic, few of them consider to construct ocean surface height field from the perspective of wind force driving ocean waves. We introduce wind force to the construction of the ocean surface height field through applying wind field data and wind-driven wave particles. Continual and realistic ocean waves result from the overlap of wind-driven wave particles, and a strategy was proposed to control these discrete wave particles and simulate an endless ocean surface. The results showed that the new method is capable of obtaining a realistic ocean scene under the influence of wind fields at real time rates. PMID:26808718

Ocean Wave Simulation Based on Wind Field.

PubMed

Li, Zhongyi; Wang, Hao

2016-01-01

Ocean wave simulation has a wide range of applications in movies, video games and training systems. Wind force is the main energy resource for generating ocean waves, which are the result of the interaction between wind and the ocean surface. While numerous methods to handle simulating oceans and other fluid phenomena have undergone rapid development during the past years in the field of computer graphic, few of them consider to construct ocean surface height field from the perspective of wind force driving ocean waves. We introduce wind force to the construction of the ocean surface height field through applying wind field data and wind-driven wave particles. Continual and realistic ocean waves result from the overlap of wind-driven wave particles, and a strategy was proposed to control these discrete wave particles and simulate an endless ocean surface. The results showed that the new method is capable of obtaining a realistic ocean scene under the influence of wind fields at real time rates.

Self-consistent molecular dynamics formulation for electric-field-mediated electrolyte transport through nanochannels

NASA Astrophysics Data System (ADS)

Raghunathan, A. V.; Aluru, N. R.

2007-07-01

A self-consistent molecular dynamics (SCMD) formulation is presented for electric-field-mediated transport of water and ions through a nanochannel connected to reservoirs or baths. The SCMD formulation is compared with a uniform field MD approach, where the applied electric field is assumed to be uniform, for 2nm and 3.5nm wide nanochannels immersed in a 0.5M KCl solution. Reservoir ionic concentrations are maintained using the dual-control-volume grand canonical molecular dynamics technique. Simulation results with varying channel height indicate that the SCMD approach calculates the electrostatic potential in the simulation domain more accurately compared to the uniform field approach, with the deviation in results increasing with the channel height. The translocation times and ionic fluxes predicted by uniform field MD can be substantially different from those predicted by the SCMD approach. Our results also indicate that during a 2ns simulation time K+ ions can permeate through a 1nm channel when the applied electric field is computed self-consistently, while the permeation is not observed when the electric field is assumed to be uniform.

The effect of magnetic field on chiral transmission in p-n-p graphene junctions.

PubMed

Li, Yuan; Wan, Qi; Peng, Yingzi; Wang, Guanqing; Qian, Zhenghong; Zhou, Guanghui; Jalil, Mansoor B A

2015-12-18

We investigate Klein tunneling in graphene heterojunctions under the influence of a perpendicular magnetic field via the non-equilibrium Green's function method. We find that the angular dependence of electron transmission is deflected sideways, resulting in the suppression of normally incident electrons and overall decrease in conductance. The off-normal symmetry axis of the transmission profile was analytically derived. Overall tunneling conductance decreases to almost zero regardless of the potential barrier height V0 when the magnetic field (B-field) exceeds a critical value, thus achieving effective confinement of Dirac fermions. The critical field occurs when the width of the magnetic field region matches the diameter of the cyclotron orbit. The potential barrier also induces distinct Fabry-Pérot fringe patterns, with a "constriction region" of low transmission when V0 is close to the Fermi energy. Application of B-field deflects the Fabry-Pérot interference pattern to an off-normal angle. Thus, the conductance of the graphene heterojunctions can be sharply modulated by adjusting the B-field strength and the potential barrier height relative to the Fermi energy.

The effect of magnetic field on chiral transmission in p-n-p graphene junctions

NASA Astrophysics Data System (ADS)

Li, Yuan; Wan, Qi; Peng, Yingzi; Wang, Guanqing; Qian, Zhenghong; Zhou, Guanghui; Jalil, Mansoor B. A.

2015-12-01

We investigate Klein tunneling in graphene heterojunctions under the influence of a perpendicular magnetic field via the non-equilibrium Green’s function method. We find that the angular dependence of electron transmission is deflected sideways, resulting in the suppression of normally incident electrons and overall decrease in conductance. The off-normal symmetry axis of the transmission profile was analytically derived. Overall tunneling conductance decreases to almost zero regardless of the potential barrier height when the magnetic field (B-field) exceeds a critical value, thus achieving effective confinement of Dirac fermions. The critical field occurs when the width of the magnetic field region matches the diameter of the cyclotron orbit. The potential barrier also induces distinct Fabry-Pérot fringe patterns, with a “constriction region” of low transmission when is close to the Fermi energy. Application of B-field deflects the Fabry-Pérot interference pattern to an off-normal angle. Thus, the conductance of the graphene heterojunctions can be sharply modulated by adjusting the B-field strength and the potential barrier height relative to the Fermi energy.

Height unification using GOCE

NASA Astrophysics Data System (ADS)

Rummel, R.

2012-12-01

With the gravity field and steady-state ocean circulation explorer (GOCE) (preferably combined with the gravity field and climate experiment (GRACE)) a new generation of geoid models will become available for use in height determination. These models will be globally consistent, accurate (<3 cm) and with a spatial resolution up to degree and order 200, when expressed in terms of a spherical harmonic expansion. GOCE is a mission of the European Space Agency (ESA). It is the first satellite equipped with a gravitational gradiometer, in the case of GOCE it measures the gradient components Vxx , Vyy, Vzzand Vxz. The GOCE gravitational sensor system comprises also a geodetic global positioning system (GPS)-receiver, three star sensors and ion-thrusters for drag compensation in flight direction. GOCE was launched in March 2009 and will fly till the end of 2013. Several gravity models have been derived from its data, their maximum degree is typically between 240 and 250. In summer 2012 a first re-processing of all level-1b data took place. One of the science objectives of GOCE is the unification of height systems. The existing height offsets among the datum zones can be determined by least-squares adjustment. This requires several precise geodetic reference points available in each height datum zone, physical heights from spirit levelling (plus gravimetry), the GOCE geoid and, in addition, short wavelength geoid refinement from terrestrial gravity anomalies. GOCE allows for important simplifications of the functional and stochastic part of the adjustment model. The future trend will be the direct determination of physical heights (orthometric as well as normal) from precise global navigation satellite system (GNSS)-positioning in combination with a next generation combined satellite-terrestrial high-resolution geoid model.

Combining 3D structure of real video and synthetic objects

NASA Astrophysics Data System (ADS)

Kim, Man-Bae; Song, Mun-Sup; Kim, Do-Kyoon

1998-04-01

This paper presents a new approach of combining real video and synthetic objects. The purpose of this work is to use the proposed technology in the fields of advanced animation, virtual reality, games, and so forth. Computer graphics has been used in the fields previously mentioned. Recently, some applications have added real video to graphic scenes for the purpose of augmenting the realism that the computer graphics lacks in. This approach called augmented or mixed reality can produce more realistic environment that the entire use of computer graphics. Our approach differs from the virtual reality and augmented reality in the manner that computer- generated graphic objects are combined to 3D structure extracted from monocular image sequences. The extraction of the 3D structure requires the estimation of 3D depth followed by the construction of a height map. Graphic objects are then combined to the height map. The realization of our proposed approach is carried out in the following steps: (1) We derive 3D structure from test image sequences. The extraction of the 3D structure requires the estimation of depth and the construction of a height map. Due to the contents of the test sequence, the height map represents the 3D structure. (2) The height map is modeled by Delaunay triangulation or Bezier surface and each planar surface is texture-mapped. (3) Finally, graphic objects are combined to the height map. Because 3D structure of the height map is already known, Step (3) is easily manipulated. Following this procedure, we produced an animation video demonstrating the combination of the 3D structure and graphic models. Users can navigate the realistic 3D world whose associated image is rendered on the display monitor.

Validating the WRF-Chem model for wind energy applications using High Resolution Doppler Lidar data from a Utah 2012 field campaign

NASA Astrophysics Data System (ADS)

Mitchell, M. J.; Pichugina, Y. L.; Banta, R. M.

2015-12-01

Models are important tools for assessing potential of wind energy sites, but the accuracy of these projections has not been properly validated. In this study, High Resolution Doppler Lidar (HRDL) data obtained with high temporal and spatial resolution at heights of modern turbine rotors were compared to output from the WRF-chem model in order to help improve the performance of the model in producing accurate wind forecasts for the industry. HRDL data were collected from January 23-March 1, 2012 during the Uintah Basin Winter Ozone Study (UBWOS) field campaign. A model validation method was based on the qualitative comparison of the wind field images, time-series analysis and statistical analysis of the observed and modeled wind speed and direction, both for case studies and for the whole experiment. To compare the WRF-chem model output to the HRDL observations, the model heights and forecast times were interpolated to match the observed times and heights. Then, time-height cross-sections of the HRDL and WRF-Chem wind speed and directions were plotted to select case studies. Cross-sections of the differences between the observed and forecasted wind speed and directions were also plotted to visually analyze the model performance in different wind flow conditions. A statistical analysis includes the calculation of vertical profiles and time series of bias, correlation coefficient, root mean squared error, and coefficient of determination between two datasets. The results from this analysis reveals where and when the model typically struggles in forecasting winds at heights of modern turbine rotors so that in the future the model can be improved for the industry.

Canopy Height and Vertical Structure from Multibaseline Polarimetric InSAR: First Results of the 2016 NASA/ESA AfriSAR Campaign

NASA Astrophysics Data System (ADS)

Lavalle, M.; Hensley, S.; Lou, Y.; Saatchi, S. S.; Pinto, N.; Simard, M.; Fatoyinbo, T. E.; Duncanson, L.; Dubayah, R.; Hofton, M. A.; Blair, J. B.; Armston, J.

2016-12-01

In this paper we explore the derivation of canopy height and vertical structure from polarimetric-interferometric SAR (PolInSAR) data collected during the 2016 AfriSAR campaign in Gabon. AfriSAR is a joint effort between NASA and ESA to acquire multi-baseline L- and P-band radar data, lidar data and field data over tropical forests and savannah sites to support calibration, validation and algorithm development in preparation for the NISAR, GEDI and BIOMASS missions. Here we focus on the L-band UAVSAR dataset acquired over the Lope National Park in Central Gabon to demonstrate mapping of canopy height and vertical structure using PolInSAR and tomographic techniques. The Lope site features a natural gradient of forest biomass from the forest-savanna boundary (< 100 Mg/ha) to dense undisturbed humid tropical forests (> 400 Mg/ha). Our dataset includes 9 long-baseline, full-polarimetric UAVSAR acquisitions along with field and lidar data from the Laser Vegetation Ice Sensor (LVIS). We first present a brief theoretical background of the PolInSAR and tomographic techniques. We then show the results of our PolInSAR algorithms to create maps of canopy height generated via inversion of the random-volume-over-ground (RVOG) and random-motion-over-ground (RVoG) models. In our approach multiple interferometric baselines are merged incoherently to maximize the interferometric sensitivity over a broad range of tree heights. Finally we show how traditional tomographic algorithms are used for the retrieval of the full vertical canopy profile. We compare our results from the different PolInSAR/tomographic algorithms to validation data derived from lidar and field data.

Heating of the solar middle chromosphere by large-scale electric currents

NASA Technical Reports Server (NTRS)

Goodman, M. L.

1995-01-01

A global resistive, two-dimensional, time-dependent magnetohydrodynamic (MHD) model is used to introduce and support the hypothesis that the quiet solar middle chromosphere is heated by resistive dissipation of large-scale electric currents which fill most of its volume. The scale height and maximum magnitude of the current density are 400 km and 31.3 m/sq m, respectively. The associated magnetic field is almost horizontal, has the same scale height as the current density, and has a maximum magnitude of 153 G. The current is carried by electrons flowing across magnetic field lines at 1 m/s. The resistivity is the electron contribution to the Pedersen resitivity for a weakly ionized, strongly magnetized, hydrogen gas. The model does not include a driving mechanism. Most of the physical quantities in the model decrease exponentially with time on a resistive timescale of 41.3 minutes. However, the initial values and spatial; dependence of these quantities are expected to be essentially the same as they would be if the correct driving mechanism were included in a more general model. The heating rate per unit mass is found to be 4.5 x 10(exp 9) ergs/g/s, independent of height and latitude. The electron density scale height is found to be 800 km. The model predicts that 90% of the thermal energy required to heat the middle chromosphere is deposited in the height range 300-760 km above the temperature minimum. It is shown to be consistent to assume that the radiation rate per unit volume is proportional to the magnetic energy density, and then it follows that the heating rate per unit volume is also proportional to the energy from the photosphere into the overlying chromosphere are briefly discussed as possible driving mechanisms for establishing and maintaining the current system. The case in which part of or all of the current is carried by protons and metal ions, and the contribution of electron-proton scattering to the current are also considered, with the conclusion that these effects do not change the qualitative prediction of the model, but probably change the quantitative predictions slightly, mainly by increasing the maximum magntiude of the current density and magnetic field to at most approximately 100 mA/m and approximately 484 G, respectively. The heating rate per unit mass, current density scale height, magnetic field scale height, temperatures, and pressures are unchanged or are only slightly changed by including these additional effects due to protons and ions.

Modeling the height of young forests regenerating from recent disturbances in Mississippi using Landsat and ICESat data

USGS Publications Warehouse

Li, Ainong; Huang, Chengquan; Sun, Guoqing; Shi, Hua; Toney, Chris; Zhu, Zhiliang; Rollins, Matthew G.; Goward, Samuel N.; Masek, Jeffery G.

2011-01-01

Many forestry and earth science applications require spatially detailed forest height data sets. Among the various remote sensing technologies, lidar offers the most potential for obtaining reliable height measurement. However, existing and planned spaceborne lidar systems do not have the capability to produce spatially contiguous, fine resolution forest height maps over large areas. This paper describes a Landsat–lidar fusion approach for modeling the height of young forests by integrating historical Landsat observations with lidar data acquired by the Geoscience Laser Altimeter System (GLAS) instrument onboard the Ice, Cloud, and land Elevation (ICESat) satellite. In this approach, “young” forests refer to forests reestablished following recent disturbances mapped using Landsat time-series stacks (LTSS) and a vegetation change tracker (VCT) algorithm. The GLAS lidar data is used to retrieve forest height at sample locations represented by the footprints of the lidar data. These samples are used to establish relationships between lidar-based forest height measurements and LTSS–VCT disturbance products. The height of “young” forest is then mapped based on the derived relationships and the LTSS–VCT disturbance products. This approach was developed and tested over the state of Mississippi. Of the various models evaluated, a regression tree model predicting forest height from age since disturbance and three cumulative indices produced by the LTSS–VCT method yielded the lowest cross validation error. The R2 and root mean square difference (RMSD) between predicted and GLAS-based height measurements were 0.91 and 1.97 m, respectively. Predictions of this model had much higher errors than indicated by cross validation analysis when evaluated using field plot data collected through the Forest Inventory and Analysis Program of USDA Forest Service. Much of these errors were due to a lack of separation between stand clearing and non-stand clearing disturbances in current LTSS–VCT products and difficulty in deriving reliable forest height measurements using GLAS samples when terrain relief was present within their footprints. In addition, a systematic underestimation of about 5 m by the developed model was also observed, half of which could be explained by forest growth that occurred between field measurement year and model target year. The remaining difference suggests that tree height measurements derived using waveform lidar data could be significantly underestimated, especially for young pine forests. Options for improving the height modeling approach developed in this study were discussed.

Modeling the Height of Young Forests Regenerating from Recent Disturbances in Mississippi using Landsat and ICESat data

NASA Technical Reports Server (NTRS)

Li, Ainong; Huang, Chengquan; Sun, Guoqing; Shi, Hua; Toney, Chris; Zhu, Zhiliang; Rollins, Matthew G.; Goward, Samuel N.; Masek, Jeffrey G.

2011-01-01

Many forestry and earth science applications require spatially detailed forest height data sets. Among the various remote sensing technologies, lidar offers the most potential for obtaining reliable height measurement. However, existing and planned spaceborne lidar systems do not have the capability to produce spatially contiguous, fine resolution forest height maps over large areas. This paper describes a Landsat-lidar fusion approach for modeling the height of young forests by integrating historical Landsat observations with lidar data acquired by the Geoscience Laser Altimeter System (GLAS) instrument onboard the Ice, Cloud, and land Elevation (ICESat) satellite. In this approach, "young" forests refer to forests reestablished following recent disturbances mapped using Landsat time-series stacks (LTSS) and a vegetation change tracker (VCT) algorithm. The GLAS lidar data is used to retrieve forest height at sample locations represented by the footprints of the lidar data. These samples are used to establish relationships between lidar-based forest height measurements and LTSS-VCT disturbance products. The height of "young" forest is then mapped based on the derived relationships and the LTSS-VCT disturbance products. This approach was developed and tested over the state of Mississippi. Of the various models evaluated, a regression tree model predicting forest height from age since disturbance and three cumulative indices produced by the LTSS-VCT method yielded the lowest cross validation error. The R(exp 2) and root mean square difference (RMSD) between predicted and GLAS-based height measurements were 0.91 and 1.97 m, respectively. Predictions of this model had much higher errors than indicated by cross validation analysis when evaluated using field plot data collected through the Forest Inventory and Analysis Program of USDA Forest Service. Much of these errors were due to a lack of separation between stand clearing and non-stand clearing disturbances in current LTSS-VCT products and difficulty in deriving reliable forest height measurements using GLAS samples when terrain relief was present within their footprints. In addition, a systematic underestimation of about 5 m by the developed model was also observed, half of which could be explained by forest growth that occurred between field measurement year and model target year. The remaining difference suggests that tree height measurements derived using waveform lidar data could be significantly underestimated, especially for young pine forests. Options for improving the height modeling approach developed in this study were discussed.

Site and stand factors affecting height growth curves of longleaf pine plantations

Treesearch

William D. Boyer

1981-01-01

Abstract Some factors related to the form of height-over- age curves in longleaf pine plantations were identified from analyses of 660 periodically remeasured plots.Seventy percent of the variation among 32 plantations in form the growth curve was accounted for by stratifying planting sites into old fields, mechanically prepared and unprepared cut-...

Multitemporal Observations of Sugarcane by TerraSAR-X Images

PubMed Central

Baghdadi, Nicolas; Cresson, Rémi; Todoroff, Pierre; Moinet, Soizic

2010-01-01

The objective of this study is to investigate the potential of TerraSAR-X (X-band) in monitoring sugarcane growth on Reunion Island (located in the Indian Ocean). Multi-temporal TerraSAR data acquired at various incidence angles (17°, 31°, 37°, 47°, 58°) and polarizations (HH, HV, VV) were analyzed in order to study the behaviour of SAR (synthetic aperture radar) signal as a function of sugarcane height and NDVI (Normalized Difference Vegetation Index). The potential of TerraSAR for mapping the sugarcane harvest was also studied. Radar signal increased quickly with crop height until a threshold height, which depended on polarization and incidence angle. Beyond this threshold, the signal increased only slightly, remained constant, or even decreased. The threshold height is slightly higher with cross polarization and higher incidence angles (47° in comparison with 17° and 31°). Results also showed that the co-polarizations channels (HH and VV) were well correlated. High correlation between SAR signal and NDVI calculated from SPOT-4/5 images was observed. TerraSAR data showed that after strong rains the soil contribution to the backscattering of sugarcane fields can be important for canes with heights of terminal visible dewlap (htvd) less than 50 cm (total cane heights around 155 cm). This increase in radar signal after strong rains could involve an ambiguity between young and mature canes. Indeed, the radar signal on TerraSAR images acquired in wet soil conditions could be of the same order for fields recently harvested and mature sugarcane fields, making difficult the detection of cuts. Finally, TerraSAR data at high spatial resolution were shown to be useful for monitoring sugarcane harvest when the fields are of small size or when the cut is spread out in time. The comparison between incidence angles of 17°, 37° and 58° shows that 37° is more suitable to monitor the sugarcane harvest. The cut is easily detectable on TerraSAR images for data acquired less than two or three months after the cut. The radar signal decreases about 5dB for images acquired some days after the cut and 3 dB for data acquired two month after the cut (VV-37°). The difference in radar signal becomes negligible (<1 dB) between harvested fields and mature canes for sugarcane harvested since three months or more. PMID:22163387

Development of an eddy-resolving reanalysis using the 1/12° global HYbrid Coordinate Ocean Model and the Navy Coupled Ocean Data Assimilation Scheme

NASA Astrophysics Data System (ADS)

Allard, Richard; Metzger, E. Joseph; Broome, Robert; Franklin, Deborah; Smedstad, Ole Martin; Wallcraft, Alan

2013-04-01

Multiple international agencies have performed atmospheric reanalyses using static dynamical models and assimilation schemes while ingesting all available quality controlled observational data. Some are clearly aimed at climate time scales while others focus on the more recent time period in which assimilated satellite data are used to constrain the system. Typically these are performed at horizontal and vertical resolutions that are coarser than the existing operational atmospheric prediction system. Multiple agencies have also performed ocean reanalyses using some of the atmospheric forcing products described above. However, only a few are eddy-permitting and none are capable of resolving oceanic mesoscale features (eddies and current meanders) across the entire globe. To fill this void, the Naval Research Laboratory is performing an eddy-resolving 1993-2010 ocean reanalysis using the 1/12° global HYbrid Coordinate Ocean Model (HYCOM) that employs the Navy Coupled Ocean Data Assimilation (NCODA) scheme. A 1/12° global HYCOM/NCODA prediction system has been running in real-time at the Naval Oceanographic Office (NAVOCEANO) since 22 December 2006. It has undergone operational testing and will become an operational product by early 2013. It is capable of nowcasting and forecasting the oceanic "weather" which includes the 3D ocean temperature, salinity and current structure, the surface mixed layer, and the location of mesoscale features such as eddies, meandering currents and fronts. The system has a mid-latitude resolution of ~7 km and employs 32 hybrid vertical coordinate surfaces. Compared to traditional isopycnal coordinate models, the hybrid vertical coordinate extends the geographic range of applicability toward shallow coastal seas and the unstratified parts of the world ocean. HYCOM contains a built-in thermodynamic ice model, where ice grows and melts due to heat flux and sea surface temperature (SST) changes, but it does not contain advanced rheological physics. The ice edge is constrained by satellite ice concentration. Once per day, NCODA performs a 3D ocean analysis using all available observational data and the 1-day HYCOM forecast as the first guess in a sequential incremental update cycle. Observational data include surface observations from satellites, including sea surface height (SSH) anomalies, SST, and sea ice concentrations, plus in-situ SST observations from ships and buoys as well as temperature and salinity profiles from XBTs, CTDs and Argo profiling floats. Surface information is projected downward using synthetic profiles from the Modular Ocean Data Assimilation System (MODAS) at those locations with a predefined SSH anomaly. Unlike previous reanalyses, this ocean reanalysis will be integrated at the same horizontal and vertical resolution as the operational system running at NAVOCEANO. The system is forced with atmospheric output from the National Centers for Environmental Prediction (NCEP) Climate Forecast System Reanalysis (CFSR) and the observations listed above. The reanalysis began in 1993 because of the advent of satellite altimeter data that will constrain the oceanic mesoscale. Significant effort has been put into obtaining and quality controlling all input observational data, with special emphasis on the profile data. The computational resources are obtained through the High Performance Computing Modernization Office.

Magnetic Field Configuration of Active Region NOAA 6555 at the Time of a Long Duration Flare on 23 March 1991: An Exception to Standard Flare Reconnection Model

NASA Technical Reports Server (NTRS)

Choudhary, Debi Prasad; Gary, Allen G.

1998-01-01

The high-resolution H(sub alpha) images observed during the decay phase of a long duration flare on 23 March 1991 are used to study the three-dimensional magnetic field configuration of the active region NOAA 6555. Whereas, all the large flares in NOAA 6555 occurred at the location of high magnetic shear and flux emergence, this long duration flare was observed in the region of low magnetic shear at the photosphere. The H(sub alpha) loop activity started soon after the maximum phase of the flare. There were few long loop at the initial phase of the activity. Some of these were sheared in the chromosphere at an angle of about 45 deg with the east-west axis. Gradually, increasing number of shorter loops, oriented along the east-west axis, started appearing. The chromospheric Dopplergrams show blue-shifts at the end points of the loops. By using different magnetic field models, we have extrapolated the photospheric magnetograms to the chromospheric heights. The magnetic field lines computed by using the potential field model correspond to most of the observed H(sub alpha) loops. The height of the H(sub alpha) loops were derived by comparing them with the computed field lines. From the temporal evolution of the H(sub alpha) loop activity, we derive the negative rate of appearance of H(sub alpha) features as a function of height. It is found that the field lines oriented along one of the neutral lines was sheared and low lying. The higher field lines were mostly potential. The paper also outlines a possible scenario for describing the post-flare stage of the observed long duration flare.

Upregulated Genes In Sporadic, Idiopathic Pulmonary Arterial Hypertension

PubMed Central

Edgar, Alasdair J; Chacón, Matilde R; Bishop, Anne E; Yacoub, Magdi H; Polak, Julia M

2006-01-01

Background To elucidate further the pathogenesis of sporadic, idiopathic pulmonary arterial hypertension (IPAH) and identify potential therapeutic avenues, differential gene expression in IPAH was examined by suppression subtractive hybridisation (SSH). Methods Peripheral lung samples were obtained immediately after removal from patients undergoing lung transplant for IPAH without familial disease, and control tissues consisted of similarly sampled pieces of donor lungs not utilised during transplantation. Pools of lung mRNA from IPAH cases containing plexiform lesions and normal donor lungs were used to generate the tester and driver cDNA libraries, respectively. A subtracted IPAH cDNA library was made by SSH. Clones isolated from this subtracted library were examined for up regulated expression in IPAH using dot blot arrays of positive colony PCR products using both pooled cDNA libraries as probes. Clones verified as being upregulated were sequenced. For two genes the increase in expression was verified by northern blotting and data analysed using Student's unpaired two-tailed t-test. Results We present preliminary findings concerning candidate genes upregulated in IPAH. Twenty-seven upregulated genes were identified out of 192 clones examined. Upregulation in individual cases of IPAH was shown by northern blot for tissue inhibitor of metalloproteinase-3 and decorin (P < 0.01) compared with the housekeeping gene glyceraldehydes-3-phosphate dehydrogenase. Conclusion Four of the up regulated genes, magic roundabout, hevin, thrombomodulin and sucrose non-fermenting protein-related kinase-1 are expressed specifically by endothelial cells and one, muscleblind-1, by muscle cells, suggesting that they may be associated with plexiform lesions and hypertrophic arterial wall remodelling, respectively. PMID:16390543

[Cloning and expression analysis of differentially expressed genes in Chinese fir stems treated by different concentrations of exogenous IAA].

PubMed

Yang, Li-Wei; Shi, Ji-Sen

2012-04-01

To reveal the potential genetic mechanisms of indole-3-acetic acid (IAA) that regulate Chinese fir wood formation, cloned the differentially expressed genes via suppress subtractive hybridization (SSH) using the truncated stems treated by 0 and 3 mg IAA/g lanolin as the driver and tester, respectively. A total of 332 unigenes that were involved in cell organization and biosynthesis, developmental processes control, electron transport, stress response, and signal transduction. To further test the results from SSH, we selected those unigenes, whose putative encoding proteins showed significantly homologous with HIRA, PGY1, SMP1, TCT, TRN2, and ARF4, and analyzed their expressed specificity in the wood formative tissues and their response to the secondary developmental changes of vascular cambium stimulated by 0, 1, and 3 mg.IAA/g.lanolin treatment. The results showed that ClHIRA, ClPGY1, and ClARF4, which were specifically expressed in the adaxial zone of stem, were positively response to the activities of cell division and tracheid differentiation stimulated by exogenous IAA treatment. However, ClSMP1, ClTCTP1, and ClTRN2, which were mainly expressed in the abaxial zones of stems, showed negative correlation with the treated levels of exogenous IAA and activities of vascular cambium secondary development at the transcriptional level. This result showed that the differential response of developmental regulatory genes located in different vascular tissues to the level changes of edogenous IAA in stems is likely to be an important molecular mechanism of auxin regulating wood formation.