Experiments on helical modes in magnetized thin foil-plasmas

NASA Astrophysics Data System (ADS)

Yager-Elorriaga, David

2017-10-01

This paper gives an in-depth experimental study of helical features on magnetized, ultrathin foil-plasmas driven by the 1-MA linear transformer driver at University of Michigan. Three types of cylindrical liner loads were designed to produce: (a) pure magneto-hydrodynamic (MHD) modes (defined as being void of the acceleration-driven magneto-Rayleigh-Taylor instability, MRT) using a non-imploding geometry, (b) pure kink modes using a non-imploding, kink-seeded geometry, and (c) MRT-MHD coupled modes in an unseeded, imploding geometry. For each configuration, we applied relatively small axial magnetic fields of Bz = 0.2-2.0 T (compared to peak azimuthal fields of 30-40 T). The resulting liner-plasmas and instabilities were imaged using 12-frame laser shadowgraphy and visible self-emission on a fast framing camera. The azimuthal mode number was carefully identified with a tracking algorithm of self-emission minima. Our experiments show that the helical structures are a manifestation of discrete eigenmodes. The pitch angle of the helix is simply m / kR , from implosion to explosion, where m, k, and R are the azimuthal mode number, axial wavenumber, and radius of the helical instability. Thus, the pitch angle increases (decreases) during implosion (explosion) as R becomes smaller (larger). We found that there are one, or at most two, discrete helical modes that arise for magnetized liners, with no apparent threshold on the applied Bz for the appearance of helical modes; increasing the axial magnetic field from zero to 0.5 T changes the relative weight between the m = 0 and m = 1 modes. Further increasing the applied axial magnetic fields yield higher m modes. Finally, the seeded kink instability overwhelms the intrinsic instability modes of the plasma. These results are corroborated with our analytic theory on the effects of radial acceleration on the classical sausage, kink, and higher m modes. Work supported by US DOE award DE-SC0012328, Sandia National Laboratories

Verification of gyrokinetic particle simulation of current-driven instability in fusion plasmas. I. Internal kink mode

DOE Office of Scientific and Technical Information (OSTI.GOV)

McClenaghan, J.; Lin, Z.; Holod, I.

The gyrokinetic toroidal code (GTC) capability has been extended for simulating internal kink instability with kinetic effects in toroidal geometry. The global simulation domain covers the magnetic axis, which is necessary for simulating current-driven instabilities. GTC simulation in the fluid limit of the kink modes in cylindrical geometry is verified by benchmarking with a magnetohydrodynamic eigenvalue code. Gyrokinetic simulations of the kink modes in the toroidal geometry find that ion kinetic effects significantly reduce the growth rate even when the banana orbit width is much smaller than the radial width of the perturbed current layer at the mode rational surface.

Helical instability in film blowing process: Analogy to buckling instability

NASA Astrophysics Data System (ADS)

Lee, Joo Sung; Kwon, Ilyoung; Jung, Hyun Wook; Hyun, Jae Chun

2017-12-01

The film blowing process is one of the most important polymer processing operations, widely used for producing bi-axially oriented film products in a single-step process. Among the instabilities observed in this film blowing process, i.e., draw resonance and helical motion occurring on the inflated film bubble, the helical instability is a unique phenomenon portraying the snake-like undulation motion of the bubble, having the period on the order of few seconds. This helical instability in the film blowing process is commonly found at the process conditions of a high blow-up ratio with too low a freezeline position and/or too high extrusion temperature. In this study, employing an analogy to the buckling instability for falling viscous threads, the compressive force caused by the pressure difference between inside and outside of the film bubble is introduced into the simulation model along with the scaling law derived from the force balance between viscous force and centripetal force of the film bubble. The simulation using this model reveals a close agreement with the experimental results of the film blowing process of polyethylene polymers such as low density polyethylene and linear low density polyethylene.

Interaction of rotating helical magnetic field with the HIST spherical torus plasmas

NASA Astrophysics Data System (ADS)

Kikuchi, Yusuke; Sugahara, Masato; Yamada, Satoshi; Yoshikawa, Tatsuya; Fukumoto, Naoyuki; Nagata, Masayoshi

2006-10-01

The physical mechanism of current drive by co-axial helicity injection (CHI) has been experimentally investigated on both spheromak and spherical torus (ST) configurations on the HIST device [1]. It has been observed that the n = 1 kink mode rotates toroidally with a frequency of 10-20 kHz in the ExB direction. It seems that the induced toroidal current by CHI strongly relates with the observed rotating kink mode. On the other hand, it is well known that MHD instabilities can be controlled or even suppressed by an externally applied helical magnetic field in tokamak devices. Therefore, we have started to install two sets of external helical coils in order to produce a rotating helical magnetic field on HIST. Mode structures of the generated rotating helical magnetic field and preliminary experimental results of the interaction of the rotating helical magnetic field with the HIST plasmas will be shown in the conference. [1] M. Nagata, et al., Physics of Plasmas 10, 2932 (2003)

Spontaneous, Defect-Free Kinking via Capillary Instability during Vapor-Liquid-Solid Nanowire Growth.

PubMed

Li, Yanying; Wang, Yanming; Ryu, Seunghwa; Marshall, Ann F; Cai, Wei; McIntyre, Paul C

2016-03-09

Kinking, a common anomaly in nanowire (NW) vapor-liquid-solid (VLS) growth, represents a sudden change of the wire's axial growth orientation. This study focuses on defect-free kinking during germanium NW VLS growth, after nucleation on a Ge (111) single crystal substrate, using Au-Ge catalyst liquid droplets of defined size. Statistical analysis of the fraction of kinked NWs reveals the dependence of kinking probability on the wire diameter and the growth temperature. The morphologies of kinked Ge NWs studied by electron microscopy show two distinct, defect-free, kinking modes, whose underlying mechanisms are explained with the help of 3D multiphase field simulations. Type I kinking, in which the growth axis changes from vertical [111] to ⟨110⟩, was observed in Ge NWs with a nominal diameter of ∼ 20 nm. This size coincides with a critical diameter at which a spontaneous transition from ⟨111⟩ to ⟨110⟩ growth occurs in the phase field simulations. Larger diameter NWs only exhibit Type II kinking, in which the growth axis changes from vertical [111] directly to an inclined ⟨111⟩ axis during the initial stages of wire growth. This is caused by an error in sidewall facet development, which produces a shrinkage in the area of the (111) growth facet with increasing NW length, causing an instability of the Au-Ge liquid droplet at the tip of the NW.

The Writhe of Helical Structures in the Solar Corona

NASA Technical Reports Server (NTRS)

Toeroek, T.; Berger, M. A.; Kliem, B.

2010-01-01

Context. Helicity is a fundamental property of magnetic fields, conserved in ideal MHD. In flux rope topology, it consists of twist and writhe helicity. Despite the common occurrence of helical structures in the solar atmosphere, little is known about how their shape relates to the writhe, which fraction of helicity is contained in writhe, and how much helicity is exchanged between twist and writhe when they erupt. Aims. Here we perform a quantitative investigation of these questions relevant for coronal flux ropes. Methods. The decomposition of the writhe of a curve into local and nonlocal components greatly facilitates its computation. We use it to study the relation between writhe and projected S shape of helical curves and to measure writhe and twist in numerical simulations of flux rope instabilities. The results are discussed with regard to filament eruptions and coronal mass ejections (CMEs). Results. (1) We demonstrate that the relation between writhe and projected S shape is not unique in principle, but that the ambiguity does not affect low-lying structures, thus supporting the established empirical rule which associates stable forward (reverse) S shaped structures low in the corona with positive (negative) helicity. (2) Kink-unstable erupting flux ropes are found to transform a far smaller fraction of their twist helicity into writhe helicity than often assumed. (3) Confined flux rope eruptions tend to show stronger writhe at low heights than ejective eruptions (CMEs). This argues against suggestions that the writhing facilitates the rise of the rope through the overlying field. (4) Erupting filaments which are S shaped already before the eruption and keep the sign of their axis writhe (which is expected if field of one chirality dominates the source volume of the eruption), must reverse their S shape in the course of the rise. Implications for the occurrence of the helical kink instability in such events are discussed.

Streaming sausage, kink and tearing instabilities in a current sheet with applications to the earth's magnetotail

NASA Technical Reports Server (NTRS)

Lee, L. C.; Wang, S.; Wei, C. Q.; Tsurutani, B. T.

1988-01-01

This paper investigates the growth rates and eigenmode structures of the streaming sausage, kink, and tearing instabilities in a current sheet with a super-Alfvenic flow. The growth rates and eigenmode structures are first considered in the ideal incompressible limit by using a four-layer model, as well as a more realistic case in which all plasma parameters and the magnetic field vary continuously along the direction perpendicular to the magnetic field and plasma flow. An initial-value method is applied to obtain the growth rate and eigenmode profiles of the fastest growing mode, which is either the sausage mode or kink mode. It is shown that, in the earth's magnetotail, where super-Alfvenic plasma flows are observed in the plasma sheet and the ratio between the plasma and magnetic pressures far away from the current layer is about 0.1-0.3 in the lobes, the streaming sausage and streaming tearing instabilities, but not kink modes, are likely to occur.

Long-wave instabilities of two interlaced helical vortices

NASA Astrophysics Data System (ADS)

Quaranta, H. U.; Brynjell-Rahkola, M.; Leweke, T.; Henningson, D. S.

2016-09-01

We present a comparison between experimental observations and theoretical predictions concerning long-wave displacement instabilities of the helical vortices in the wake of a two-bladed rotor. Experiments are performed with a small-scale rotor in a water channel, using a set-up that allows the individual triggering of various instability modes at different azimuthal wave numbers, leading to local or global pairing of successive vortex loops. The initial development of the instability and the measured growth rates are in good agreement with the predictions from linear stability theory, based on an approach where the helical vortex system is represented by filaments. At later times, local pairing develops into large-scale distortions of the vortices, whereas for global pairing the non-linear evolution returns the system almost to its initial geometry.

Helical vortices: viscous dynamics and instability

NASA Astrophysics Data System (ADS)

Rossi, Maurice; Selcuk, Can; Delbende, Ivan; Ijlra-Upmc Team; Limsi-Cnrs Team

2014-11-01

Understanding the dynamical properties of helical vortices is of great importance for numerous applications such as wind turbines, helicopter rotors, ship propellers. Locally these flows often display a helical symmetry: fields are invariant through combined axial translation of distance Δz and rotation of angle θ = Δz / L around the same z-axis, where 2 πL denotes the helix pitch. A DNS code with built-in helical symmetry has been developed in order to compute viscous quasi-steady basic states with one or multiple vortices. These states will be characterized (core structure, ellipticity, ...) as a function of the pitch, without or with an axial flow component. The instability modes growing in the above base flows and their growth rates are investigated by a linearized version of the DNS code coupled to an Arnoldi procedure. This analysis is complemented by a helical thin-cored vortex filaments model. ANR HELIX.

Coupling of sausage, kink, and magneto-Rayleigh-Taylor instabilities in a cylindrical liner

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weis, M. R.; Zhang, P.; Lau, Y. Y., E-mail: yylau@umich.edu

This paper analyzes the coupling of magneto-Rayleigh-Taylor (MRT), sausage, and kink modes in an imploding cylindrical liner, using ideal MHD. A uniform axial magnetic field of arbitrary value is included in each region: liner, its interior, and its exterior. The dispersion relation is solved exactly, for arbitrary radial acceleration (-g), axial wavenumber (k), azimuthal mode number (m), liner aspect ratio, and equilibrium quantities in each region. For small k, a positive g (inward radial acceleration in the lab frame) tends to stabilize the sausage mode, but destabilize the kink mode. For large k, a positive g destabilizes both the kinkmore » and sausage mode. Using the 1D-HYDRA simulation results for an equilibrium model that includes a pre-existing axial magnetic field and a preheated fuel, we identify several stages of MRT-sausage-kink mode evolution. We find that the m = 1 kink-MRT mode has a higher growth rate at the initial stage and stagnation stage of the implosion, and that the m = 0 sausage-MRT mode dominates at the main part of implosion. This analysis also sheds light on a puzzling feature in Harris' classic paper of MRT [E. G. Harris, Phys. Fluids 5, 1057 (1962)]. An attempt is made to interpret the persistence of the observed helical structures [Awe et al., Phys. Rev. Lett. 111, 235005 (2013)] in terms of non-axisymmetric eigenmode.« less

Control of External Kink Instability

NASA Astrophysics Data System (ADS)

Navratil, Gerald

2004-11-01

A fundamental pressure and current limiting phenomenon in magnetically confined plasmas for fusion energy is the long wavelength ideal-MHD kink mode. These modes have been extensively studied in tokamak and reversed field pinch (RFP) devices. They are characterized by significant amplitude on the boundary of the confined plasma and can therefore be controlled by manipulation of the external boundary conditions. In the past ten years, the theoretically predicted stabilizing effect of a nearby conducting wall has been documented in experiments, which opens the possibility of a significant increase in maximum stable plasma pressure. While these modes are predicted to remain unstable when the stabilizing wall is resistive, their growth rates are greatly reduced from the hydrodynamic time scale to the time scale of magnetic diffusion through the resistive wall. These resistive wall slowed kink modes have been identified as limiting phenomena in tokamak (DIII-D, PBX-M, HBT-EP, JT-60U, JET, NSTX) and RFP (HBTX, Extrap, T2R) devices. The theoretical prediction of stabilization to nearly the ideal wall pressure limit by toroidal plasma rotation and/or active feedback control using coils has recently been realized experimentally. Sustained, stable operation at double the no-wall pressure limit has been achieved. Discovery of the phenomenon of resonant field amplification by marginally stable kink modes and its role in the momentum balance of rotationally stabilized plasmas has emerged as a key feature. A theoretical framework, based on an extension of the very successful treatment of the n=0 axisymmetric mode developed in the early 1990's, to understand the stabilization mechanisms and model the performance of active feedback control systems is now established. This allows design of kink control systems for burning plasma experiments like ITER.

Absolute versus convective helical magnetorotational instability in a Taylor-Couette flow.

PubMed

Priede, Jānis; Gerbeth, Gunter

2009-04-01

We analyze numerically the magnetorotational instability of a Taylor-Couette flow in a helical magnetic field [helical magnetorotational instability (HMRI)] using the inductionless approximation defined by a zero magnetic Prandtl number (Pr_{m}=0) . The Chebyshev collocation method is used to calculate the eigenvalue spectrum for small-amplitude perturbations. First, we carry out a detailed conventional linear stability analysis with respect to perturbations in the form of Fourier modes that corresponds to the convective instability which is not in general self-sustained. The helical magnetic field is found to extend the instability to a relatively narrow range beyond its purely hydrodynamic limit defined by the Rayleigh line. There is not only a lower critical threshold at which HMRI appears but also an upper one at which it disappears again. The latter distinguishes the HMRI from a magnetically modified Taylor vortex flow. Second, we find an absolute instability threshold as well. In the hydrodynamically unstable regime before the Rayleigh line, the threshold of absolute instability is just slightly above the convective one although the critical wavelength of the former is noticeably shorter than that of the latter. Beyond the Rayleigh line the lower threshold of absolute instability rises significantly above the corresponding convective one while the upper one descends significantly below its convective counterpart. As a result, the extension of the absolute HMRI beyond the Rayleigh line is considerably shorter than that of the convective instability. The absolute HMRI is supposed to be self-sustained and, thus, experimentally observable without any external excitation in a system of sufficiently large axial extension.

Observations of nonlinear and nonuniform kink dynamics in a laboratory flux rope

NASA Astrophysics Data System (ADS)

Sears, J.; Intrator, T.; Feng, Y.; Swan, H.; Gao, K.; Chapdelaine, L.

2013-12-01

A plasma column with axial magnetic field and current has helically twisted field lines. When current density in the column exceeds the kink instability threshold this magnetic configuration becomes unstable. Flux ropes in the solar wind and some solar prominences exhibit this topology, with their dynamics strongly and nonlinearly coupled to the ratio of axial current to magnetic field. The current-driven kink mode is ubiquitous in laboratory plasmas and well suited to laboratory study. In the Reconnection Scaling Experiment (RSX), nonlinear stability properties beyond the simple perturbative kink model are observed and readily diagnosed. We use a plasma gun to generate a single plasma column 0.50 m in length, in which we then drive an axial plasma current at the limit of marginal kink stability. With plasma current maintained at this threshold, we observe a deformation to a new dynamic equilibrium with finite gyration amplitude, where the currents and magnetic fields that support the force balance have surprising axial structure. Three dimensional measurements of magnetic field, plasma density, plasma potential, and ion flow velocity in the deformed plasma column show variation in the axial direction of the instability parameter and in the terms of the momentum equation. Likewise the pitch of the kink is measured to be nonuniform over the column length. In addition there is a return current antiparallel to the driven plasma current at distances up to 0.30 m from the gun that also modifies the force balance. These axial inhomogeneities, which are not considered in the model of an ideal kink, may be the terms that allow the deformed equilibrium of the RSX plasma to exist. Supported by DOE Office of Fusion Energy Sciences under LANS contract DE-AC52-06NA25369, NASA Geospace NNHIOA044I, Basic. This work performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

Instabilities of a rotating helical rod

NASA Astrophysics Data System (ADS)

Park, Yunyoung; Ko, William; Kim, Yongsam; Lim, Sookkyung

2016-11-01

Bacteria such as Escherichia coli and Vibrio alginolyticus have helical flagellar filament. By rotating a motor, which is located at the bottom end of the flagellar filament embedded in the cell body, CCW or CW, they swim forward or backward. We model a left-handed helix by the Kirchhoff rod theory and use regularized Stokes formulation to study an interaction between the surrounding fluid and the flagellar filament. We perform numerical studies focusing on relations between physical parameters and critical angular frequency of the motor, which separates overwhiring from twirling. We are also interested in the buckling instability of the hook, which is very flexible elastic rod. By measuring buckling angle, which is an angle between rotational axis and helical axis, we observe the effects of physical parameters on buckling of the hook.

Structural details (kinks and non-α conformations) in transmembrane helices are intrahelically determined and can be predicted by sequence pattern descriptors

PubMed Central

Rigoutsos, Isidore; Riek, Peter; Graham, Robert M.; Novotny, Jiri

2003-01-01

One of the promising methods of protein structure prediction involves the use of amino acid sequence-derived patterns. Here we report on the creation of non-degenerate motif descriptors derived through data mining of training sets of residues taken from the transmembrane-spanning segments of polytopic proteins. These residues correspond to short regions in which there is a deviation from the regular α-helical character (i.e. π-helices, 310-helices and kinks). A ‘search engine’ derived from these motif descriptors correctly identifies, and discriminates amongst instances of the above ‘non-canonical’ helical motifs contained in the SwissProt/TrEMBL database of protein primary structures. Our results suggest that deviations from α-helicity are encoded locally in sequence patterns only about 7–9 residues long and can be determined in silico directly from the amino acid sequence. Delineation of such variations in helical habit is critical to understanding the complex structure–function relationships of polytopic proteins and for drug discovery. The success of our current methodology foretells development of similar prediction tools capable of identifying other structural motifs from sequence alone. The method described here has been implemented and is available on the World Wide Web at http://cbcsrv.watson.ibm.com/Ttkw.html. PMID:12888523

Structural details (kinks and non-alpha conformations) in transmembrane helices are intrahelically determined and can be predicted by sequence pattern descriptors.

PubMed

Rigoutsos, Isidore; Riek, Peter; Graham, Robert M; Novotny, Jiri

2003-08-01

One of the promising methods of protein structure prediction involves the use of amino acid sequence-derived patterns. Here we report on the creation of non-degenerate motif descriptors derived through data mining of training sets of residues taken from the transmembrane-spanning segments of polytopic proteins. These residues correspond to short regions in which there is a deviation from the regular alpha-helical character (i.e. pi-helices, 3(10)-helices and kinks). A 'search engine' derived from these motif descriptors correctly identifies, and discriminates amongst instances of the above 'non-canonical' helical motifs contained in the SwissProt/TrEMBL database of protein primary structures. Our results suggest that deviations from alpha-helicity are encoded locally in sequence patterns only about 7-9 residues long and can be determined in silico directly from the amino acid sequence. Delineation of such variations in helical habit is critical to understanding the complex structure-function relationships of polytopic proteins and for drug discovery. The success of our current methodology foretells development of similar prediction tools capable of identifying other structural motifs from sequence alone. The method described here has been implemented and is available on the World Wide Web at http://cbcsrv.watson.ibm.com/Ttkw.html.

Simulations of AGN jets: magnetic kink instability versus conical shocks

NASA Astrophysics Data System (ADS)

Barniol Duran, Rodolfo; Tchekhovskoy, Alexander; Giannios, Dimitrios

2017-08-01

Relativistic jets in active galactic nuclei (AGN) convert as much as half of their energy into radiation. To explore the poorly understood processes that are responsible for this conversion, we carry out fully 3D magnetohydrodynamic (MHD) simulations of relativistic magnetized jets. Unlike the standard approach of injecting the jets at large radii, our simulated jets self-consistently form at the source and propagate and accelerate outwards for several orders of magnitude in distance before they interact with the ambient medium. We find that this interaction can trigger strong energy dissipation of two kinds inside the jets, depending on the properties of the ambient medium. Those jets that form in a new outburst and drill a fresh hole through the ambient medium fall victim to a 3D magnetic kink instability and dissipate their energy primarily through magnetic reconnection in the current sheets formed by the instability. On the other hand, those jets that form during repeated cycles of AGN activity and escape through a pre-existing hole in the ambient medium maintain their stability and dissipate their energy primarily at MHD recollimation shocks. In both cases, the dissipation region can be associated with a change in the density profile of the ambient gas. The Bondi radius in AGN jets serves as such a location.

Propulsion and Instability of a Flexible Helical Rod Rotating in a Viscous Fluid

NASA Astrophysics Data System (ADS)

Jawed, M. K.; Khouri, N. K.; Da, F.; Grinspun, E.; Reis, P. M.

2015-10-01

We combine experiments with simulations to investigate the fluid-structure interaction of a flexible helical rod rotating in a viscous fluid, under low Reynolds number conditions. Our analysis takes into account the coupling between the geometrically nonlinear behavior of the elastic rod with a nonlocal hydrodynamic model for the fluid loading. We quantify the resulting propulsive force, as well as the buckling instability of the originally helical filament that occurs above a critical rotation velocity. A scaling analysis is performed to rationalize the onset of this instability. A universal phase diagram is constructed to map out the region of successful propulsion and the corresponding boundary of stability is established. Comparing our results with data for flagellated bacteria suggests that this instability may be exploited in nature for physiological purposes.

The external kink mode in diverted tokamaks

DOE PAGES

Turnbull, Alan D.; Hanson, Jeremy M.; Turco, Francesca; ...

2016-06-16

Here, an explanation is provided for the disruptive instability in diverted tokamaks when the safety factor at the 95% poloidal flux surface, q 95, is driven below 2.0. The instability is a resistive kink counterpart to the current-driven ideal mode that traditionally explained the corresponding disruption in limited cross-sections when q edge, the safety factor at the outermost closed flux surface, lies just below a rational value. Experimentally, external kink modes are observed in limiter configurations as the current in a tokamak is ramped up and q edge decreases through successive rational surfaces. For q edge < 2, the instabilitymore » is always encountered and is highly disruptive. However, diverted plasmas, in which q edge is formally infinite in the magnetohydrodynamic (MHD) model, have presented a longstanding difficulty since the theory would predict stability, yet, the disruptive limit occurs in practice when q 95, reaches 2. It is shown from numerical calculations that a resistive kink mode is linearly destabilized by the rapidly increasing resistivity at the plasma edge when q 95 < 2, but q edge >> 2. The resistive kink behaves much like the ideal kink with predominantly kink or interchange parity and no real sign of a tearing component. However, the growth rates scale with a fractional power of the resistivity near the q = 2 surface. The results have a direct bearing on the conventional edge cutoff procedures used in most ideal MHD codes, as well as implications for ITER and for future reactor options.« less

Measurements of Magnetic Helicity within Two Interacting Flux Ropes

NASA Astrophysics Data System (ADS)

Dehaas, Timothy; Gekelman, Walter

2016-10-01

Magnetic helicity (HM) has become a useful tool in the exploration of astrophysical plasmas. Its conservation in the MHD limit (and even some fluid approaches) constrains the global behavior of large plasma structures. One such astrophysical structure is a magnetic flux rope: a rope-like, current-carrying plasma embedded in an external magnetic field. Bundles of these ropes are commonly observed extending from the solar surface and can be found in the near-earth environment. In this well-diagnosed experiment (3D measurements of ne, Te, Vp, B, J, E, uflow) , two magnetic flux ropes were generated in the Large Plasma Device at UCLA. These ropes were driven kink-unstable, commencing complex motion. As they interact, helicity conservation is broken in regions of reconnection, turbulence, and instabilities. The changes in helicity can be visualized as 1) the transport of helicity (ϕB +E × A) and 2) the dissipation of the helicity (-2EB). Magnetic helicity is observed to have a negative sign and its counterpart, cross helicity, a positive one. These qualities oscillate 8% peak-to-peak. As the ropes move and the topology of the field lines change, a quasi-separatrix layer (QSL) is formed. The volume averaged HM and the largest value of Q both oscillate but not in phase. In addition to magnetic helicity, similar quantities such as self-helicity, mutual-helicity, vorticity, and canonical helicity are derived and will be presented. This work is supported by LANL-UC research Grant and done at the Basic Plasma Science Facility, which is funded by DOE and NSF.

TORNADO-LIKE EVOLUTION OF A KINK-UNSTABLE SOLAR PROMINENCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Wensi; Liu, Rui; Wang, Yuming, E-mail: rliu@ustc.edu.cn

We report on the tornado-like evolution of a quiescent prominence on 2014 November 1. The eastern section of the prominence first rose slowly, transforming into an arch-shaped structure as high as ∼150 Mm above the limb; the arch then writhed moderately in a left-handed sense, while the original dark prominence material emitted in the Fe ix 171 Å passband, and a braided structure appeared at the eastern edge of the warped arch. The unraveling of the braided structure was associated with a transient brightening in the EUV and apparently contributed to the formation of a curtain-like structure (CLS). The CLSmore » consisted of myriad thread-like loops rotating counterclockwise about the vertical if viewed from above. Heated prominence material was observed to slide along these loops and land outside the filament channel. The tornado eventually disintegrated and the remaining material flew along a left-handed helical path constituting approximately a full turn, as corroborated through stereoscopic reconstruction, into the cavity of the stable, western section of the prominence. We suggest that the tornado-like evolution of the prominence was governed by the helical kink instability, and that the CLS formed through magnetic reconnections between the prominence field and the overlying coronal field.« less

Tornado-Like Evolution of A Kink-Unstable Solar Prominence

NASA Astrophysics Data System (ADS)

Wang, W.; Liu, R.; Wang, Y.

2016-12-01

We report on the tornado-like evolution of a quiescent prominence on 2014 November 1. The evolution started with a slow rise of the eastern section of the prominence into an arch-shaped structure as high as 150 Mm above the limb, and then the arch experienced a moderate, left-handed writhing. Following the writhing, the originally dark prominence material became in emission in the Fe IX 171 °A passband, and a braiding structure appeared at the eastern edge of the writhing prominence body, whose unraveling process was associated with a transient brightening in EUV and apparently contributed to the formation of a curtain-like structure (CLS), which consisted of myriads of thread-like loops rotating counterclockwise about the vertical if viewed from above. Material sliding along these loops landed outside of the prominence channel. The tornado was eventually disintegrated and the remaining material flew along a lefthanded helical path of approximately a full turn, as confirmed through stereoscopic reconstruction, into the cavity of the stable, western section of the prominence. We suggest that the tornado-like evolution of the prominence was regulated by the helical kink instability, and that the CLS forms through magnetic reconnections between the flux-rope flux and the overlying flux.

Tornado-like Evolution of a Kink-unstable Solar Prominence

NASA Astrophysics Data System (ADS)

Wang, Wensi; Liu, Rui; Wang, Yuming

2017-01-01

We report on the tornado-like evolution of a quiescent prominence on 2014 November 1. The eastern section of the prominence first rose slowly, transforming into an arch-shaped structure as high as ˜150 Mm above the limb; the arch then writhed moderately in a left-handed sense, while the original dark prominence material emitted in the Fe ix 171 Å passband, and a braided structure appeared at the eastern edge of the warped arch. The unraveling of the braided structure was associated with a transient brightening in the EUV and apparently contributed to the formation of a curtain-like structure (CLS). The CLS consisted of myriad thread-like loops rotating counterclockwise about the vertical if viewed from above. Heated prominence material was observed to slide along these loops and land outside the filament channel. The tornado eventually disintegrated and the remaining material flew along a left-handed helical path constituting approximately a full turn, as corroborated through stereoscopic reconstruction, into the cavity of the stable, western section of the prominence. We suggest that the tornado-like evolution of the prominence was governed by the helical kink instability, and that the CLS formed through magnetic reconnections between the prominence field and the overlying coronal field.

Helical magnetorotational instability in magnetized Taylor-Couette flow.

PubMed

Liu, Wei; Goodman, Jeremy; Herron, Isom; Ji, Hantao

2006-11-01

Hollerbach and Rüdiger have reported a new type of magnetorotational instability (MRI) in magnetized Taylor-Couette flow in the presence of combined axial and azimuthal magnetic fields. The salient advantage of this "helical" MRI (HMRI) is that marginal instability occurs at arbitrarily low magnetic Reynolds and Lundquist numbers, suggesting that HMRI might be easier to realize than standard MRI (axial field only), and that it might be relevant to cooler astrophysical disks, especially those around protostars, which may be quite resistive. We confirm previous results for marginal stability and calculate HMRI growth rates. We show that in the resistive limit, HMRI is a weakly destabilized inertial oscillation propagating in a unique direction along the axis. But we report other features of HMRI that make it less attractive for experiments and for resistive astrophysical disks. Large axial currents are required. More fundamentally, instability of highly resistive flow is peculiar to infinitely long or periodic cylinders: finite cylinders with insulating endcaps are shown to be stable in this limit, at least if viscosity is neglected. Also, Keplerian rotation profiles are stable in the resistive limit regardless of axial boundary conditions. Nevertheless, the addition of a toroidal field lowers thresholds for instability even in finite cylinders.

Local study of helical magnetorotational instability in viscous Keplerian disks

NASA Astrophysics Data System (ADS)

MahdaviGharavi, M.; Hajisharifi, K.; Mehidan, H.

2018-03-01

In this paper, regarding the recent detection of significant azimuthal magnetic field in some accretion disks such as protostellar (Donati et al. in Nature 438:466, 2005), the multi-fluid model has been employed to analysis the stability of Keplerian rotational viscous dusty plasma system in a current-free helical magnetic field structure. Using the fluid-Maxwell equations, the general dispersion relation of the excited modes in the system has been obtained by applying the local approximation method in the linear perturbation theory. The typical numerical analysis of the obtained dispersion relation in the high-frequency regime shows that the presence of azimuthal magnetic field component in Keplerian flow has a considerable role in the stability conditions of the system. It also shows that the magnetic field helicity has a stabilization role against the magnetorotational instability (MRI) in the system due to contraction of the unstable wavelength region and decreasing the maximum growth rate of the instability. In this sense, the stabilization role of the viscosity term is more considerable for HMRI (instability in the presence of azimuthal magnetic field component) than the corresponding MRI (instability in the absence of azimuthal magnetic field component). Moreover, considering the discovered azimuthal magnetic field in these systems, the MRI can be arisen in the over-all range of dust grains construction values in contract with traditional MRI. This investigation can greatly contribute to better understanding the physics of some astrophysical phenomena, such as the main source of turbulence and angular momentum transport in protostellar and the other sufficiently ionized astrophysical disks, where the azimuthal magnetic field component in these systems can play a significant role.

Scrape-off-layer characterization and current-control of kink modes in HBT-EP

NASA Astrophysics Data System (ADS)

Brooks, John; Stewart, Ian; Levesque, Jeffrey; Mauel, Mike; Navratil, Gerald

2017-10-01

Scrape-off layer (SOL) currents and their paths through tokamaks are not well understood, but their control may prove crucial to the success of ITER and future fusion energy devices. We extend Columbia University's High Beta Tokamak-Extended Pulse (HBT-EP) experiment and active GPU feedback system to study the SOL and control MHD kink instabilities by actively controlling these currents. First, the radial plasma profiles and the edge structure of kink instabilities are measured with two triple probes. Second, we use active feedback control of a radially adjustable biased electrode to change the rotation and magnitude of slowly growing kink instabilities. By changing the phase between the probe's voltage and the edge instability with active feedback, we study its ability to influence and control plasma MHD structures. This work is in preparation for a planned 2018 multi-electrode SOL control upgrade. Supported by U.S. DOE Grant DE-FG02-86ER53222.

Double Current Sheet Instabilities and the Transition to Turbulence.

NASA Astrophysics Data System (ADS)

Pucci, F.; Velli, M.; Biferale, L.; Sahoo, G.

2016-12-01

The double tearing instability has often been studied as a proxy for the m=1 kink mode in cylindrical plasma. In this paper we describe the results of 3D simulations of an initially periodic double current sheet described by Harris equilibria with a guide field in two cases: 1) zero net helicity and an average magnetic field and 2) a well defined helicity (force free but non constant alpha). We study and contrast the de-stabilization and transition to turbulence for these two cases: we describe spectra, cascades, and possible application to heliospheric phenomena, in particular CME evolution and relaxation. The research leading to these results has received fund- ing from the European Union's Seventh Framework Pro- gramme (FP7/2007-2013) under grant agreement No. 339032

Energetic-ion-driven global instabilities in stellarator/helical plasmas and comparison with tokamak plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toi, K.; Ogawa, K.; Isobe, M.

2011-01-01

Comprehensive understanding of energetic-ion-driven global instabilities such as Alfven eigenmodes (AEs) and their impact on energetic ions and bulk plasma is crucially important for tokamak and stellarator/helical plasmas and in the future for deuterium-tritium (DT) burning plasma experiments. Various types of global modes and their associated enhanced energetic ion transport are commonly observed in toroidal plasmas. Toroidicity-induced AEs and ellipticity-induced AEs, whose gaps are generated through poloidal mode coupling, are observed in both tokamak and stellarator/helical plasmas. Global AEs and reversed shear AEs, where toroidal couplings are not as dominant were also observed in those plasmas. Helicity induced AEs thatmore » exist only in 3D plasmas are observed in the large helical device (LHD) and Wendelstein 7 Advanced Stellarator plasmas. In addition, the geodesic acoustic mode that comes from plasma compressibility is destabilized by energetic ions in both tokamak and LHD plasmas. Nonlinear interaction of these modes and their influence on the confinement of the bulk plasma as well as energetic ions are observed in both plasmas. In this paper, the similarities and differences in these instabilities and their consequences for tokamak and stellarator/helical plasmas are summarized through comparison with the data sets obtained in LHD. In particular, this paper focuses on the differences caused by the rotational transform profile and the 2D or 3D geometrical structure of the plasma equilibrium. Important issues left for future study are listed.« less

Kink-induced full and failed eruptions of two coupled flux tubes of the same filament

NASA Astrophysics Data System (ADS)

Dechev, M.; Koleva, K.; Duchlev, P.

2018-02-01

In this work, we report results from the study of a filament/prominence eruption on 2014 May 4. This eruption belongs to the class of rarely reported causally linked eruptions of two coupled flux tubes (FTs) of a quiet region filament. We made a comparative analysis based on multiwave observations from Solar Dynamics Observatory (SDO) and Solar Terrestrial Relations Observatory (STEREO) A and B combining the high temporal and spatial data taken from three different viewpoints. The main results of the study are as follows: (1) The source of the eruptive prominence consists of two coupled FTs located near the eastern limb: top-located one (FT1) and bottom-located one (FT2). (2) FT1 and FT2 had the same helicity, i.e. left-handed twist and writhe. Their untwisting motion during eruption suggests that kink instability seems to act. (3) The kinematic evolution of the FT1 suggests a slow successful eruption that was associated with a slow CME. (4) The FT2 exhibited failed kinked eruption with a non-radial propagation followed by its reformation. This eruption was accompanied of apparent mass draining in the legs, flare-ribbons and post-flare EUV arcade.

Topological solitons in helical strings

NASA Astrophysics Data System (ADS)

Nisoli, Cristiano; Balatsky, Alexander V.

2015-06-01

The low-energy physics of (quasi)degenerate one-dimensional systems is typically understood as the particle-like dynamics of kinks between stable, ordered structures. Such dynamics, we show, becomes highly nontrivial when the ground states are topologically constrained: a dynamics of the domains rather than on the domains which the kinks separate. Motivated by recently reported observations of charged polymers physio-adsorbed on nanotubes, we study kinks between helical structures of a string wrapping around a cylinder. While their motion cannot be disentangled from domain dynamics, and energy and momentum is not concentrated in the solitons, the dynamics of the domains can be folded back into a particle-like description of the local excitations.

Proline-induced kink in a helix arises primarily from dihedral angle energy: a molecular dynamics simulation on alamethicin

NASA Astrophysics Data System (ADS)

Cheng, Shu-Fang; Chang, Ding-Kwo

1999-03-01

To investigate the cause of the kink in a helix induced by proline, a restrained molecular dynamics simulation was performed on alamethicin (Alm), a channel-forming peptide. Results on the linear and kinked helices indicated that the kinked form has lower energy than the linear one and the difference can be attributed largely to the dihedral angle term. The argument is strengthened by calculated results on the peptide in which proline 14 was substituted by alanine. The kinked and linear forms had virtually the same total and dihedral angle energies for the alanine analog. Possible implications for Alm voltage-gating are discussed.

Working the kinks out of nucleosomal DNA

PubMed Central

Olson, Wilma K.; Zhurkin, Victor B.

2011-01-01

Condensation of DNA in the nucleosome takes advantage of its double-helical architecture. The DNA deforms at sites where the base pairs face the histone octamer. The largest so-called kink-and-slide deformations occur in the vicinity of arginines that penetrate the minor groove. Nucleosome structures formed from the 601 positioning sequence differ subtly from those incorporating an AT-rich human α-satellite DNA. Restraints imposed by the histone arginines on the displacement of base pairs can modulate the sequence-dependent deformability of DNA and potentially contribute to the unique features of the different nucleosomes. Steric barriers mimicking constraints found in the nucleosome induce the simulated large-scale rearrangement of canonical B-DNA to kink-and-slide states. The pathway to these states shows non-harmonic behavior consistent with bending profiles inferred from AFM measurements. PMID:21482100

Kink dynamics in a one-dimensional growing surface

NASA Astrophysics Data System (ADS)

Politi, Paolo

1998-07-01

A high-symmetry crystal surface may undergo a kinetic instability during the growth, such that its late stage evolution resembles a phase separation process. This parallel is rigorous in one dimension, if the conserved surface current is derivable from a free energy. We study the problem in the presence of a physically relevant term breaking the up-down symmetry of the surface and that cannot be derived from a free energy. Following the treatment introduced by Kawasaki and Ohta [Physica A 116, 573 (1982)] for the symmetric case, we are able to translate the problem of the surface evolution into a problem of nonlinear dynamics of kinks (domain walls). Because of the break of symmetry, two different classes (A and B) of kinks appear and their analytical form is derived. The effect of the adding term is to shrink a kink A and to widen the neighboring kink B in such a way that the product of their widths keeps constant. Concerning the dynamics, this implies that kinks A move much faster than kinks B. Since the kink profiles approach exponentially the asymptotical values, the time dependence of the average distance L(t) between kinks does not change: L(t)~lnt in the absence of noise, and L(t)~t1/3 in the presence of (shot) noise. However, the crossover time between the first and the second regime may increase even of some orders of magnitude. Finally, our results show that kinks A may be so narrow that their width is comparable to the lattice constant: in this case, they indeed represent a discontinuity of the surface slope, that is, an angular point, and a different approach to coarsening should be used.

MHD and Reconnection Activity During Local Helicity Injection

NASA Astrophysics Data System (ADS)

Barr, J. L.; Bongard, M. W.; Burke, M. G.; Fonck, R. J.; Reusch, J. A.; Richner, N. J.

2016-10-01

Scaling local helicity injection (LHI) to larger devices requires a validated, predictive model of its current drive mechanism. NIMROD simulations predict the injected helical current streams persist in the edge and periodically reconnect to form axisymmetric current rings that travel into the bulk plasma to grow Ip and poloidal flux. In simulation, these events result in discrete bursts of Alfvénic-frequency MHD activity and jumps in Ip of order ΔIp Iinj , in qualitative agreement with large n = 1 activity found in experiment. Fast imaging prior to tokamak formation supports the instability of, and apparent reconnection between, adjacent helical streams. The bursts exhibit toroidal amplitude asymmetries consistent with a kink structure singly line-tied to the injectors. Internal measurements localize this activity to the injector radial location. Pairwise correlations of poloidal Mirnov coil amplitude and phase match expectations of an edge-localized current stream carrying Iinj. Prior to tokamak formation, reconnection from both adjacent helical windings and co-injected current streams are shown to strongly heat impurity ions. After tokamak formation, strong anomalous ion heating in the plasma edge is attributed to continuous reconnection between colinear streams. The n = 1 bursts occur less frequently as Ip rises, likely caused by increased stream stability as Bv rises and qedge drops. This evidence supports the general NIMROD model of LHI, confirms the persistence and role of the edge current streams, and motivates experiments at higher Iinj and BT. Supported by US DOE Grants DE-FG02-96ER54375, DE-SC0006928.

Helicity Transformation under the Collision and Merging of Magnetic Flux Ropes

NASA Astrophysics Data System (ADS)

Dehaas, Timothy

2016-10-01

A magnetic flux rope is a tube-like, current carrying plasma embedded in an external magnetic field. The magnetic field lines resemble threads in a rope, which vary in pitch according to radius. Flux ropes are ubiquitous in astrophysical plasmas, and bundles of these structures play an important role in the dynamics of the space environment. They are observed in the solar atmosphere and near-earth environment where they are seen to twist, merge, tear, and writhe. In this MHD context, their global dynamics are bound by rules of magnetic helicity conservation, unless, under a non-ideal process, helicity is transformed through magnetic reconnection, turbulence, or localized instabilities. These processes are tested under experimental conditions in the Large Plasma Device (LAPD). The device is a twenty-meter long, one-meter diameter, cylindrical vacuum vessel designed to generate a highly reproducible, magnetized plasma. Reliable shot-to-shot repetition of plasma parameters and over four hundred diagnostic ports enable the collection of volumetric datasets (measurements of ne, Te, Vp, B, J, E, uflow) as two kink-unstable flux ropes form, move, collide, and merge. Similar experiments on the LAPD have utilized these volumetric datasets, visualizing magnetic reconnection through a topological quasi-separatrix layer, or QSL. This QSL is shown to be spatially coincident with the reconnection rate, ∫ E . dl , and oscillates (although out of phase) with global helicity. Magnetic helicity is observed to have a negative sign and its counterpart, cross helicity, a positive one. These quantities oscillate 8% peak-to-peak, and the changes in helicity are visualized as 1) the transport of helicity (ϕB + E × A) and 2) the dissipation of the helicity - 2 E . B . This work is supported by LANL-UC research Grant and done at the Basic Plasma Science Facility, which is funded by DOE and NSF.

A Continuum Damage Mechanics Model to Predict Kink-Band Propagation Using Deformation Gradient Tensor Decomposition

NASA Technical Reports Server (NTRS)

Bergan, Andrew C.; Leone, Frank A., Jr.

2016-01-01

A new model is proposed that represents the kinematics of kink-band formation and propagation within the framework of a mesoscale continuum damage mechanics (CDM) model. The model uses the recently proposed deformation gradient decomposition approach to represent a kink band as a displacement jump via a cohesive interface that is embedded in an elastic bulk material. The model is capable of representing the combination of matrix failure in the frame of a misaligned fiber and instability due to shear nonlinearity. In contrast to conventional linear or bilinear strain softening laws used in most mesoscale CDM models for longitudinal compression, the constitutive response of the proposed model includes features predicted by detailed micromechanical models. These features include: 1) the rotational kinematics of the kink band, 2) an instability when the peak load is reached, and 3) a nonzero plateau stress under large strains.

Scaled laboratory experiments explain the kink behaviour of the Crab Nebula jet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, C. K.; Tzeferacos, P.; Lamb, D.

X-ray images from the Chandra X-ray Observatory show that the South-East jet in the Crab nebula changes direction every few years. This remarkable phenomenon is also observed in jets associated with pulsar wind nebulae and other astrophysical objects, and therefore is a fundamental feature of astrophysical jet evolution that needs to be understood. Theoretical modeling and numerical simulations have suggested that this phenomenon may be a consequence of magnetic fields (B) and current-driven magnetohydrodynamic (MHD) instabilities taking place in the jet, but until now there has been no verification of this process in a controlled laboratory environment. Here we reportmore » the first such experiments, using scaled laboratory plasma jets generated by high-power lasers to model the Crab jet and monoenergetic-proton radiography to provide direct visualization and measurement of magnetic fields and their behavior. The toroidal magnetic field embedded in the supersonic jet triggered plasma instabilities and resulted in considerable deflections throughout the jet propagation, mimicking the kinks in the Crab jet. We also demonstrated that these kinks are stabilized by high jet velocity, consistent with the observation that instabilities alter the jet orientation but do not disrupt the overall jet structure. We successfully modeled these laboratory experiments with a validated three-dimensional (3D) numerical simulation, which in conjunction with the experiments provide compelling evidence that we have an accurate model of the most important physics of magnetic fields and MHD instabilities in the observed, kinked jet in the Crab nebula. The experiments initiate a novel approach in the laboratory for visualizing fields and instabilities associated with jets observed in various astrophysical objects, ranging from stellar to extragalactic systems. We expect that future work along this line will have important impact on the study and understanding of such fundamental

Scaled laboratory experiments explain the kink behaviour of the Crab Nebula jet

DOE PAGES

Li, C. K.; Tzeferacos, P.; Lamb, D.; ...

2016-10-07

X-ray images from the Chandra X-ray Observatory show that the South-East jet in the Crab nebula changes direction every few years. This remarkable phenomenon is also observed in jets associated with pulsar wind nebulae and other astrophysical objects, and therefore is a fundamental feature of astrophysical jet evolution that needs to be understood. Theoretical modeling and numerical simulations have suggested that this phenomenon may be a consequence of magnetic fields (B) and current-driven magnetohydrodynamic (MHD) instabilities taking place in the jet, but until now there has been no verification of this process in a controlled laboratory environment. Here we reportmore » the first such experiments, using scaled laboratory plasma jets generated by high-power lasers to model the Crab jet and monoenergetic-proton radiography to provide direct visualization and measurement of magnetic fields and their behavior. The toroidal magnetic field embedded in the supersonic jet triggered plasma instabilities and resulted in considerable deflections throughout the jet propagation, mimicking the kinks in the Crab jet. We also demonstrated that these kinks are stabilized by high jet velocity, consistent with the observation that instabilities alter the jet orientation but do not disrupt the overall jet structure. We successfully modeled these laboratory experiments with a validated three-dimensional (3D) numerical simulation, which in conjunction with the experiments provide compelling evidence that we have an accurate model of the most important physics of magnetic fields and MHD instabilities in the observed, kinked jet in the Crab nebula. The experiments initiate a novel approach in the laboratory for visualizing fields and instabilities associated with jets observed in various astrophysical objects, ranging from stellar to extragalactic systems. We expect that future work along this line will have important impact on the study and understanding of such fundamental

Shock heating in numerical simulations of kink-unstable coronal loops

PubMed Central

Bareford, M. R.; Hood, A. W.

2015-01-01

An analysis of the importance of shock heating within coronal magnetic fields has hitherto been a neglected area of study. We present new results obtained from nonlinear magnetohydrodynamic simulations of straight coronal loops. This work shows how the energy released from the magnetic field, following an ideal instability, can be converted into thermal energy, thereby heating the solar corona. Fast dissipation of magnetic energy is necessary for coronal heating and this requirement is compatible with the time scales associated with ideal instabilities. Therefore, we choose an initial loop configuration that is susceptible to the fast-growing kink, an instability that is likely to be created by convectively driven vortices, occurring where the loop field intersects the photosphere (i.e. the loop footpoints). The large-scale deformation of the field caused by the kinking creates the conditions for the formation of strong current sheets and magnetic reconnection, which have previously been considered as sites of heating, under the assumption of an enhanced resistivity. However, our simulations indicate that slow mode shocks are the primary heating mechanism, since, as well as creating current sheets, magnetic reconnection also generates plasma flows that are faster than the slow magnetoacoustic wave speed. PMID:25897092

Probing the role of intercalating protein sidechains for kink formation in DNA

PubMed Central

Sandmann, Achim

2018-01-01

Protein binding can induce DNA kinks, which are for example important to enhance the specificity of the interaction and to facilitate the assembly of multi protein complexes. The respective proteins frequently exhibit amino acid sidechains that intercalate between the DNA base steps at the site of the kink. However, on a molecular level there is only little information available about the role of individual sidechains for kink formation. To unravel structural principles of protein-induced DNA kinking we have performed molecular dynamics (MD) simulations of five complexes that varied in their architecture, function, and identity of intercalated residues. Simulations were performed for the DNA complexes of wildtype proteins (Sac7d, Sox-4, CcpA, TFAM, TBP) and for mutants, in which the intercalating residues were individually or combined replaced by alanine. The work revealed that for systems with multiple intercalated residues, not all of them are necessarily required for kink formation. In some complexes (Sox-4, TBP), one of the residues proved to be essential for kink formation, whereas the second residue has only a very small effect on the magnitude of the kink. In other systems (e.g. Sac7d) each of the intercalated residues proved to be individually capable of conferring a strong kink suggesting a partially redundant role of the intercalating residues. Mutation of the key residues responsible for kinking either resulted in stable complexes with reduced kink angles or caused conformational instability as evidenced by a shift of the kink to an adjacent base step. Thus, MD simulations can help to identify the role of individual inserted residues for kinking, which is not readily apparent from an inspection of the static structures. This information might be helpful for understanding protein-DNA interactions in more detail and for designing proteins with altered DNA binding properties in the future. PMID:29432448

Probing the role of intercalating protein sidechains for kink formation in DNA.

PubMed

Sandmann, Achim; Sticht, Heinrich

2018-01-01

Protein binding can induce DNA kinks, which are for example important to enhance the specificity of the interaction and to facilitate the assembly of multi protein complexes. The respective proteins frequently exhibit amino acid sidechains that intercalate between the DNA base steps at the site of the kink. However, on a molecular level there is only little information available about the role of individual sidechains for kink formation. To unravel structural principles of protein-induced DNA kinking we have performed molecular dynamics (MD) simulations of five complexes that varied in their architecture, function, and identity of intercalated residues. Simulations were performed for the DNA complexes of wildtype proteins (Sac7d, Sox-4, CcpA, TFAM, TBP) and for mutants, in which the intercalating residues were individually or combined replaced by alanine. The work revealed that for systems with multiple intercalated residues, not all of them are necessarily required for kink formation. In some complexes (Sox-4, TBP), one of the residues proved to be essential for kink formation, whereas the second residue has only a very small effect on the magnitude of the kink. In other systems (e.g. Sac7d) each of the intercalated residues proved to be individually capable of conferring a strong kink suggesting a partially redundant role of the intercalating residues. Mutation of the key residues responsible for kinking either resulted in stable complexes with reduced kink angles or caused conformational instability as evidenced by a shift of the kink to an adjacent base step. Thus, MD simulations can help to identify the role of individual inserted residues for kinking, which is not readily apparent from an inspection of the static structures. This information might be helpful for understanding protein-DNA interactions in more detail and for designing proteins with altered DNA binding properties in the future.

Transverse kink oscillations in the presence of twist

NASA Astrophysics Data System (ADS)

Terradas, J.; Goossens, M.

2012-12-01

Context. Magnetic twist is thought to play an important role in coronal loops. The effects of magnetic twist on stable magnetohydrodynamic (MHD) waves is poorly understood because they are seldom studied for relevant cases. Aims: The goal of this work is to study the fingerprints of magnetic twist on stable transverse kink oscillations. Methods: We numerically calculated the eigenmodes of propagating and standing MHD waves for a model of a loop with magnetic twist. The azimuthal component of the magnetic field was assumed to be small in comparison to the longitudinal component. We did not consider resonantly damped modes or kink instabilities in our analysis. Results: For a nonconstant twist the frequencies of the MHD wave modes are split, which has important consequences for standing waves. This is different from the degenerated situation for equilibrium models with constant twist, which are characterised by an azimuthal component of the magnetic field that linearly increases with the radial coordinate. Conclusions: In the presence of twist standing kink solutions are characterised by a change in polarisation of the transverse displacement along the tube. For weak twist, and in the thin tube approximation, the frequency of standing modes is unaltered and the tube oscillates at the kink speed of the corresponding straight tube. The change in polarisation is linearly proportional to the degree of twist. This has implications with regard to observations of kink modes, since the detection of this variation in polarisation can be used as an indirect method to estimate the twist in oscillating loops.

Off-equatorial current-driven instabilities ahead of approaching dipolarization fronts

NASA Astrophysics Data System (ADS)

Zhang, Xu; Angelopoulos, V.; Pritchett, P. L.; Liu, Jiang

2017-05-01

Recent kinetic simulations have revealed that electromagnetic instabilities near the ion gyrofrequency and slightly away from the equatorial plane can be driven by a current parallel to the magnetic field prior to the arrival of dipolarization fronts. Such instabilities are important because of their potential contribution to global electromagnetic energy conversion near dipolarization fronts. Of the several instabilities that may be consistent with such waves, the most notable are the current-driven electromagnetic ion cyclotron instability and the current-driven kink-like instability. To confirm the existence and characteristics of these instabilities, we used observations by two Time History of Events and Macroscale Interactions during Substorms satellites, one near the neutral sheet observing dipolarization fronts and the other at the boundary layer observing precursor waves and currents. We found that such instabilities with monochromatic signatures are rare, but one of the few cases was selected for further study. Two different instabilities, one at about 0.3 Hz and the other at a much lower frequency, 0.02 Hz, were seen in the data from the off-equatorial spacecraft. A parallel current attributed to an electron beam coexisted with the waves. Our instability analysis attributes the higher-frequency instability to a current-driven ion cyclotron instability and the lower frequency instability to a kink-like instability. The current-driven kink-like instability we observed is consistent with the instabilities observed in the simulation. We suggest that the currents needed to excite these low-frequency instabilities are so intense that the associated electron beams are easily thermalized and hence difficult to observe.

Spiroplasma swim by a processive change in body helicity.

NASA Astrophysics Data System (ADS)

Shaevitz, Joshua

2006-03-01

Microscopic organisms must rely on very different strategies than their macroscopic counterparts to swim through liquid. To date, the best understood method for prokaryotic swimming employs the rotation of flagella. I will present data that Spiroplasma, tiny helical bacteria that infect plants and insects, use a very different approach. By measuring cell kinematics during free swimming, we find that propulsion is generated by the propagation of kink pairs down the length of the cell body. A processive change in the helicity of the body creates these waves and enables directional movement. Unlike the motion of other helical swimmers such as Spirochetes, Spiroplasma swimming velocity increases with increasing viscosity. In addition, cell morphological parameters such as helical pitch and cell length influence swimming velocity.

Kinks, loops, and protein folding, with protein A as an example

PubMed Central

Krokhotin, Andrey; Liwo, Adam; Maisuradze, Gia G.; Niemi, Antti J.; Scheraga, Harold A.

2014-01-01

The dynamics and energetics of formation of loops in the 46-residue N-terminal fragment of the B-domain of staphylococcal protein A has been studied. Numerical simulations have been performed using coarse-grained molecular dynamics with the united-residue (UNRES) force field. The results have been analyzed in terms of a kink (heteroclinic standing wave solution) of a generalized discrete nonlinear Schrödinger (DNLS) equation. In the case of proteins, the DNLS equation arises from a Cα-trace-based energy function. Three individual kink profiles were identified in the experimental three-α-helix structure of protein A, in the range of the Glu16-Asn29, Leu20-Asn29, and Gln33-Asn44 residues, respectively; these correspond to two loops in the native structure. UNRES simulations were started from the full right-handed α-helix to obtain a clear picture of kink formation, which would otherwise be blurred by helix formation. All three kinks emerged during coarse-grained simulations. It was found that the formation of each is accompanied by a local free energy increase; this is expressed as the change of UNRES energy which has the physical sense of the potential of mean force of a polypeptide chain. The increase is about 7 kcal/mol. This value can thus be considered as the free energy barrier to kink formation in full α-helical segments of polypeptide chains. During the simulations, the kinks emerge, disappear, propagate, and annihilate each other many times. It was found that the formation of a kink is initiated by an abrupt change in the orientation of a pair of consecutive side chains in the loop region. This resembles the formation of a Bloch wall along a spin chain, where the Cα backbone corresponds to the chain, and the amino acid side chains are interpreted as the spin variables. This observation suggests that nearest-neighbor side chain–side chain interactions are responsible for initiation of loop formation. It was also found that the individual kinks are

PARTIAL ERUPTION OF A FILAMENT WITH TWISTING NON-UNIFORM FIELDS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bi, Yi; Jiang, Yunchun; Yang, Jiayan

The eruption of a filament in a kinklike fashion is often regarded as a signature of kink instability. However, the kink instability threshold for the filament’s magnetic structure is not widely understood. Using Hα observations from the New Vacuum Solar Telescope, we present a partial eruptive filament. During the eruption, the filament thread appeared to split from its middle and to break out in a kinklike fashion. In this period, the remaining filament material stayed below and erupted without the kinking motion later on. The coronal magnetic field lines associated with the filament are obtained from nonlinear force-free field extrapolationsmore » using the twelve-minute-cadence vector magnetograms of the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamic Observatory. We studied the extrapolated field lines passing through the magnetic dips which are in good agreement with the observed filament. The field lines are non-uniformly twisted and appear to be composed of two twisted flux ropes winding around each other. One of them has a higher twist than the other, and the flux rope with the higher twist has its dips aligned with the kinking eruptive thread at the beginning of its eruption. Before the eruption, moreover, the flux rope with the higher twist was found to expand with an approximately constant field twist. In addition, the helicity flux maps deduced from the HMI magnetograms show that some helicity is injected into the overlying magnetic arcade, but no significant helicity is injected into the flux ropes. Accordingly, we suggest that the highly twisted flux rope became kink unstable when the instability threshold declined with the expansion of the flux rope.« less

Emergent kink stability of a magnetized plasma jet injected into a transverse background magnetic field

NASA Astrophysics Data System (ADS)

Zhang, Yue; Gilmore, Mark; Hsu, Scott C.; Fisher, Dustin M.; Lynn, Alan G.

2017-11-01

We report experimental results on the injection of a magnetized plasma jet into a transverse background magnetic field in the HelCat linear plasma device at the University of New Mexico [M. Gilmore et al., J. Plasma Phys. 81(1), 345810104 (2015)]. After the plasma jet leaves the plasma-gun muzzle, a tension force arising from an increasing curvature of the background magnetic field induces in the jet a sheared axial-flow gradient above the theoretical kink-stabilization threshold. We observe that this emergent sheared axial flow stabilizes the n = 1 kink mode in the jet, whereas a kink instability is observed in the jet when there is no background magnetic field present.

Magneto Rayleigh-Taylor, Sausage, and Kink Instability Experiments on a MegaAmpere Linear Transformer Driver

NASA Astrophysics Data System (ADS)

Yager-Elorriaga, D. A.; Steiner, A. M.; Patel, S. G.; Jordan, N. M.; Gilgenbach, R. M.; Lau, Y. Y.; Weis, M. R.; Zhang, P.

2015-11-01

At the Michigan Accelerator for Inductive Z-Pinch Experiments (MAIZE) facility, a 1-MA Linear Transformer Driver (LTD) is being used to deliver 500-600 kA to cylindrical liners in order to study the magneto Rayleigh-Taylor (MRT), sausage, and kink instabilities in imploding and exploding Al plasmas. The liners studied in this experiment had thicknesses of 400 nm to 30 μm, heights of 1-2 cm, and diameters of 1-6 mm. The plasmas were imaged using 4-time-frame, laser shadowgraphy and shearing-interferometry at 532 nm. For imploding liners, the measured acceleration was found to be less than predicted from the current pulse, indicating significant diffusion of the azimuthal magnetic field. A simple experimental configuration is presented for ``end-on'' laser probing in the r- θ plane in order to study the interior of the liner. Finally, the effects of axial magnetic fields are determined by modifying the return current posts and incorporating external coils. Experimental growth rates are determined and discussed. This work was supported by DOE award DE-SC0012328. S.G. Patel supported by Sandia National Labs. D.A. Yager was supported by NSF fellowship grant DGE 1256260.

Conductance of kinked nanowires

NASA Astrophysics Data System (ADS)

Cook, B. G.; Varga, K.

2011-01-01

The conductance properties of kinked nanowires are studied by first-principles transport calculations within a recently developed complex potential framework. Using prototypical examples of monoatomic Au chains as well as small diameter single-crystalline silicon nanowires we show that transmission strongly depends on the kink geometry and one can tune the conductance properties by the kink angle and other geometrical factors. In the case of a silicon nanowire the presence of a kink drastically reduces the conductance.

Experimental evidence of a helical, supercritical instability in pipe flow of shear thinning fluids

NASA Astrophysics Data System (ADS)

Picaut, L.; Ronsin, O.; Caroli, C.; Baumberger, T.

2017-08-01

We study experimentally the flow stability of entangled polymer solutions extruded through glass capillaries. We show that the pipe flow becomes linearly unstable beyond a critical value (Wic≃5 ) of the Weissenberg number, via a supercritical bifurcation which results in a helical distortion of the extrudate. We find that the amplitude of the undulation vanishes as the aspect ratio L /R of the capillary tends to zero, and saturates for large L /R , indicating that the instability affects the whole pipe flow, rather than the contraction or exit regions. These results, when compared to previous theoretical and experimental works, lead us to argue that the nature of the instability is controlled by the level of shear thinning of the fluids. In addition, we provide strong hints that the nonlinear development of the instabiilty is mitigated, in our system, by the gradual emergence of gross wall slip.

Experimental evidence for a transient Tayler instability in a cylindrical liquid-metal column.

PubMed

Seilmayer, Martin; Stefani, Frank; Gundrum, Thomas; Weier, Tom; Gerbeth, Gunter; Gellert, Marcus; Rüdiger, Günther

2012-06-15

In the current-driven, kink-type Tayler instability (TI) a sufficiently strong azimuthal magnetic field becomes unstable against nonaxisymmetric perturbations. The TI has been discussed as a possible ingredient of the solar dynamo mechanism and a source of the helical structures in cosmic jets. It is also considered as a size-limiting factor for liquid metal batteries. We report on a liquid metal TI experiment using a cylindrical column of the eutectic alloy GaInSn to which electrical currents of up to 8 kA are applied. We present results of external magnetic field measurements that indicate the transient occurrence of the TI in good agreement with numerical predictions. The interference of TI with the competing large-scale convection, resulting from Joule heating, is also discussed.

Linear calculations of edge current driven kink modes with BOUT++ code

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, G. Q., E-mail: ligq@ipp.ac.cn; Xia, T. Y.; Lawrence Livermore National Laboratory, Livermore, California 94550

This work extends previous BOUT++ work to systematically study the impact of edge current density on edge localized modes, and to benchmark with the GATO and ELITE codes. Using the CORSICA code, a set of equilibria was generated with different edge current densities by keeping total current and pressure profile fixed. Based on these equilibria, the effects of the edge current density on the MHD instabilities were studied with the 3-field BOUT++ code. For the linear calculations, with increasing edge current density, the dominant modes are changed from intermediate-n and high-n ballooning modes to low-n kink modes, and the linearmore » growth rate becomes smaller. The edge current provides stabilizing effects on ballooning modes due to the increase of local shear at the outer mid-plane with the edge current. For edge kink modes, however, the edge current does not always provide a destabilizing effect; with increasing edge current, the linear growth rate first increases, and then decreases. In benchmark calculations for BOUT++ against the linear results with the GATO and ELITE codes, the vacuum model has important effects on the edge kink mode calculations. By setting a realistic density profile and Spitzer resistivity profile in the vacuum region, the resistivity was found to have a destabilizing effect on both the kink mode and on the ballooning mode. With diamagnetic effects included, the intermediate-n and high-n ballooning modes can be totally stabilized for finite edge current density.« less

Magnetic control of magnetohydrodynamic instabilities in tokamaks

DOE PAGES

Strait, Edward J.

2014-11-24

Externally applied, non-axisymmetric magnetic fields form the basis of several relatively simple and direct methods to control magnetohydrodynamic (MHD) instabilities in a tokamak, and most present and planned tokamaks now include a set of non-axisymmetric control coils for application of fields with low toroidal mode numbers. Non-axisymmetric applied fields are routinely used to compensate small asymmetries ( δB/B ~ 10 -3 to 10 -4) of the nominally axisymmetric field, which otherwise can lead to instabilities through braking of plasma rotation and through direct stimulus of tearing modes or kink modes. This compensation may be feedback-controlled, based on the magnetic responsemore » of the plasma to the external fields. Non-axisymmetric fields are used for direct magnetic stabilization of the resistive wall mode — a kink instability with a growth rate slow enough that feedback control is practical. Saturated magnetic islands are also manipulated directly with non-axisymmetric fields, in order to unlock them from the wall and spin them to aid stabilization, or position them for suppression by localized current drive. Several recent scientific advances form the foundation of these developments in the control of instabilities. Most fundamental is the understanding that stable kink modes play a crucial role in the coupling of non-axisymmetric fields to the plasma, determining which field configurations couple most strongly, how the coupling depends on plasma conditions, and whether external asymmetries are amplified by the plasma. A major advance for the physics of high-beta plasmas ( β = plasma pressure/magnetic field pressure) has been the understanding that drift-kinetic resonances can stabilize the resistive wall mode at pressures well above the ideal-MHD stability limit, but also that such discharges can be very sensitive to external asymmetries. The common physics of stable kink modes has brought significant unification to the topics of static error

Effects of stochastic field lines on the pressure driven MHD instabilities in the Large Helical Device

NASA Astrophysics Data System (ADS)

Ohdachi, Satoshi; Watanabe, Kiyomasa; Sakakibara, Satoru; Suzuki, Yasuhiro; Tsuchiya, Hayato; Ming, Tingfeng; Du, Xiaodi; LHD Expriment Group Team

2014-10-01

In the Large Helical Device (LHD), the plasma is surrounded by the so-called magnetic stochastic region, where the Kolmogorov length of the magnetic field lines is very short, from several tens of meters and to thousands meters. Finite pressure gradient are formed in this region and MHD instabilities localized in this region is observed since the edge region of the LHD is always unstable against the pressure driven mode. Therefore, the saturation level of the instabilities is the key issue in order to evaluate the risk of this kind of MHD instabilities. The saturation level depends on the pressure gradient and on the magnetic Reynolds number; there results are similar to the MHD mode in the closed magnetic surface region. The saturation level in the stochastic region is affected also by the stocasticity itself. Parameter dependence of the saturation level of the MHD activities in the region is discussed in detail. It is supported by NIFS budget code ULPP021, 028 and is also partially supported by the Ministry of Education, Science, Sports and Culture, Grant-in-Aid for Scientific Research 26249144, by the JSPS-NRF-NSFC A3 Foresight Program NSFC: No. 11261140328.

Stabilizing effect of helical current drive on tearing modes

NASA Astrophysics Data System (ADS)

Yuan, Y.; Lu, X. Q.; Dong, J. Q.; Gong, X. Y.; Zhang, R. B.

2018-01-01

The effect of helical driven current on the m = 2/n = 1 tearing mode is studied numerically in a cylindrical geometry using the method of reduced magneto-hydro-dynamic simulation. The results show that the local persistent helical current drive from the beginning time can be applied to control the tearing modes, and will cause a rebound effect called flip instability when the driven current reaches a certain value. The current intensity threshold value for the occurrence of flip instability is about 0.00087I0. The method of controlling the development of tearing mode with comparative economy is given. If the local helical driven current is discontinuous, the magnetic island can be controlled within a certain range, and then, the tearing modes stop growing; thus, the flip instability can be avoided. We also find that the flip instability will become impatient with delay injection of the driven current because the high order harmonics have been developed in the original O-point. The tearing mode instability can be controlled by using the electron cyclotron current drive to reduce the gradient of the current intensity on the rational surfaces.

Mixed lump-kink and rogue wave-kink solutions for a (3 + 1) -dimensional B-type Kadomtsev-Petviashvili equation in fluid mechanics

NASA Astrophysics Data System (ADS)

Hu, Cong-Cong; Tian, Bo; Wu, Xiao-Yu; Yuan, Yu-Qiang; Du, Zhong

2018-02-01

Under investigation is a (3 + 1) -dimensional B-type Kadomtsev-Petviashvili equation, which describes the weakly dispersive waves in a fluid. Via the Hirota method and symbolic computation, we obtain the mixed lump-kink and mixed rogue wave-kink solutions. Through the mixed lump-kink solutions, we observe three different phenomena between a lump and one kink. For the fusion phenomenon, a lump and a kink are merged with the lump's energy transferring into the kink gradually, until the lump merges into the kink completely. Fission phenomenon displays that a lump separates from a kink. The last phenomenon shows that a lump travels together with a kink with their amplitudes unchanged. In addition, we graphically study the interaction between a rogue wave and a pair of the kinks. It can be observed that the rogue wave arises from one kink and disappears into the other kink. At certain time, the amplitude of the rogue wave reaches the maximum.

Reconnection and Associated Flares in Global Relativistic Jets Containing Helical Magnetic Fields with PIC Simulations

NASA Astrophysics Data System (ADS)

Nishikawa, Ken-Ichi; Hartmann, Dieter; Mizuno, Yosuke; Niemiec, Jacek; Dutan, Ioana; Kobzar, Oleh; Gomez, Jose; Meli, Athina; POHL, Martin

2018-01-01

In the study of relativistic jets one of the key open questions is their interaction with theenvironment on the microscopic level. Here, we study the initial evolution of both electron–proton and electron–positron relativistic jets containing helical magnetic fields, focusing on their interaction with an ambient plasma. We have performed simulations of “global” jets containing helical magnetic fields in order to examine how helical magnetic fields affect kinetic instabilities such as the Weibel instability, the kinetic Kelvin-Helmholtz instability (kKHI) and the Mushroom instability (MI) using a larger jet radius. In our initial simulation study these kinetic instabilities are suppressed and new types of instabilities can grow. In the electron-proton jet simulation a recollimation-like instability occurs near the center of jet. In the electron-positron jet simulation mixed kinetic instabilities grow and the jet electrons are accelerated. The evolution of electron-ion jets will be investigated with different mass ratios. Simulations using much larger systems are required in order to thoroughly follow the evolution of global jets containing helical magnetic fields. We will investigate mechanisms of flares possibly due to reconnection.

Bifurcated helical core equilibrium states in tokamaks

NASA Astrophysics Data System (ADS)

Cooper, W. A.; Chapman, I. T.; Schmitz, O.; Turnbull, A. D.; Tobias, B. J.; Lazarus, E. A.; Turco, F.; Lanctot, M. J.; Evans, T. E.; Graves, J. P.; Brunetti, D.; Pfefferlé, D.; Reimerdes, H.; Sauter, O.; Halpern, F. D.; Tran, T. M.; Coda, S.; Duval, B. P.; Labit, B.; Pochelon, A.; Turnyanskiy, M. R.; Lao, L.; Luce, T. C.; Buttery, R.; Ferron, J. R.; Hollmann, E. M.; Petty, C. C.; van Zeeland, M.; Fenstermacher, M. E.; Hanson, J. M.; Lütjens, H.

2013-07-01

Tokamaks with weak to moderate reversed central shear in which the minimum inverse rotational transform (safety factor) qmin is in the neighbourhood of unity can trigger bifurcated magnetohydrodynamic equilibrium states, one of which is similar to a saturated ideal internal kink mode. Peaked prescribed pressure profiles reproduce the ‘snake’ structures observed in many tokamaks which has led to a novel explanation of the snake as a bifurcated equilibrium state. Snake equilibrium structures are computed in simulations of the tokamak à configuration variable (TCV), DIII-D and mega amp spherical torus (MAST) tokamaks. The internal helical deformations only weakly modulate the plasma-vacuum interface which is more sensitive to ripple and resonant magnetic perturbations. On the other hand, the external perturbations do not alter the helical core deformation in a significant manner. The confinement of fast particles in MAST simulations deteriorate with the amplitude of the helical core distortion. These three-dimensional bifurcated solutions constitute a paradigm shift that motivates the applications of tools developed for stellarator research in tokamak physics investigations.

Scaled laboratory experiments explain the kink behaviour of the Crab Nebula jet

PubMed Central

Li, C. K.; Tzeferacos, P.; Lamb, D.; Gregori, G.; Norreys, P. A.; Rosenberg, M. J.; Follett, R. K.; Froula, D. H.; Koenig, M.; Seguin, F. H.; Frenje, J. A.; Rinderknecht, H. G.; Sio, H.; Zylstra, A. B.; Petrasso, R. D.; Amendt, P. A.; Park, H. S.; Remington, B. A.; Ryutov, D. D.; Wilks, S. C.; Betti, R.; Frank, A.; Hu, S. X.; Sangster, T. C.; Hartigan, P.; Drake, R. P.; Kuranz, C. C.; Lebedev, S. V.; Woolsey, N. C.

2016-01-01

The remarkable discovery by the Chandra X-ray observatory that the Crab nebula's jet periodically changes direction provides a challenge to our understanding of astrophysical jet dynamics. It has been suggested that this phenomenon may be the consequence of magnetic fields and magnetohydrodynamic instabilities, but experimental demonstration in a controlled laboratory environment has remained elusive. Here we report experiments that use high-power lasers to create a plasma jet that can be directly compared with the Crab jet through well-defined physical scaling laws. The jet generates its own embedded toroidal magnetic fields; as it moves, plasma instabilities result in multiple deflections of the propagation direction, mimicking the kink behaviour of the Crab jet. The experiment is modelled with three-dimensional numerical simulations that show exactly how the instability develops and results in changes of direction of the jet. PMID:27713403

Scaled laboratory experiments explain the kink behaviour of the Crab Nebula jet.

PubMed

Li, C K; Tzeferacos, P; Lamb, D; Gregori, G; Norreys, P A; Rosenberg, M J; Follett, R K; Froula, D H; Koenig, M; Seguin, F H; Frenje, J A; Rinderknecht, H G; Sio, H; Zylstra, A B; Petrasso, R D; Amendt, P A; Park, H S; Remington, B A; Ryutov, D D; Wilks, S C; Betti, R; Frank, A; Hu, S X; Sangster, T C; Hartigan, P; Drake, R P; Kuranz, C C; Lebedev, S V; Woolsey, N C

2016-10-07

The remarkable discovery by the Chandra X-ray observatory that the Crab nebula's jet periodically changes direction provides a challenge to our understanding of astrophysical jet dynamics. It has been suggested that this phenomenon may be the consequence of magnetic fields and magnetohydrodynamic instabilities, but experimental demonstration in a controlled laboratory environment has remained elusive. Here we report experiments that use high-power lasers to create a plasma jet that can be directly compared with the Crab jet through well-defined physical scaling laws. The jet generates its own embedded toroidal magnetic fields; as it moves, plasma instabilities result in multiple deflections of the propagation direction, mimicking the kink behaviour of the Crab jet. The experiment is modelled with three-dimensional numerical simulations that show exactly how the instability develops and results in changes of direction of the jet.

Helicity transformation under the collision and merging of two magnetic flux ropes

NASA Astrophysics Data System (ADS)

DeHaas, Timothy; Gekelman, Walter

2017-07-01

Magnetic helicity has become a useful tool in the analysis of astrophysical plasmas. Its conservation in the magnetohydrodynamic limit (and other fluid approaches) constrains the global behavior of large plasma structures. One such astrophysical structure is a magnetic flux rope: a tube-like, current-carrying plasma embedded in an external magnetic field. Bundles of these ropes are commonly observed in the near-earth environment and solar atmosphere. In this well-diagnosed experiment (three-dimensional measurements of ne, Te, Vp, B, J, E, and uflow), two magnetic flux ropes are generated in the Large Plasma Device at UCLA. These ropes are driven kink-unstable to trigger complex motion. As they interact, helicity conservation is examined in regions of reconnection. We examine (1) the transport of helicity and (2) the dissipation of the helicity. As the ropes move and the topology of the field lines diverge, a quasi-separatrix layer (QSL) is formed. As the QSL forms, magnetic helicity is dissipated within this region. At the same time, there is an influx of canonical helicity into the region such that the temporal derivative of magnetic helicity is zero.

Helical vortices: linear stability analysis and nonlinear dynamics

NASA Astrophysics Data System (ADS)

Selçuk, C.; Delbende, I.; Rossi, M.

2018-02-01

We numerically investigate, within the context of helical symmetry, the dynamics of a regular array of two or three helical vortices with or without a straight central hub vortex. The Navier-Stokes equations are linearised to study the instabilities of such basic states. For vortices with low pitches, an unstable mode is extracted which corresponds to a displacement mode and growth rates are found to compare well with results valid for an infinite row of point vortices or an infinite alley of vortex rings. For larger pitches, the system is stable with respect to helically symmetric perturbations. In the nonlinear regime, we follow the time-evolution of the above basic states when initially perturbed by the dominant instability mode. For two vortices, sequences of overtaking events, leapfrogging and eventually merging are observed. The transition between such behaviours occurs at a critical ratio involving the core size and the vortex-separation distance. Cases with three helical vortices are also presented.

Extreme ultraviolet diagnostic upgrades for kink mode control on the HBT-EP tokamak

NASA Astrophysics Data System (ADS)

Levesque, J. P.; Brooks, J. W.; Desanto, S.; Mauel, M. E.; Navratil, G. A.; Page, J. W.; Hansen, C. J.; Delgado-Aparicio, L.

2016-10-01

Optical diagnostics can provide non-invasive measurements of tokamak equilibria and the internal characteristics of MHD mode activity. We present research plans and ongoing progress on upgrading extreme ultraviolet (EUV) diagnostics in the HBT-EP tokamak. Four sets of 16 poloidal views will allow tomographic reconstruction of plasma emissivity and internal kink mode structure. Emission characteristics of naturally-occurring m/n = 2/1, 3/2, and 3/1 tearing and kink modes will be compared with expectations from a synthetic diagnostic. Coupling between internal and external modes leading up to disruptions is studied. The internal plasma response to external magnetic perturbations is investigated, and compared with magnetic response measurements. Correlation between internal emissivity and external magnetic measurements provides a global picture of long-wavelength MHD instabilities. Measurements are input to HBT-EP's GPU-based feedback system, allowing active feedback for kink modes using only optical sensors and both magnetic and edge current actuators. A separate two-color, 16-chord tangential system will be installed next year to allow reconstruction of temperature profiles and their fluctuations versus time. Supported by U.S. DOE Grant DE-FG02-86ER53222.

Effect of Magnetic Twist on Nonlinear Transverse Kink Oscillations of Line-tied Magnetic Flux Tubes

NASA Astrophysics Data System (ADS)

Terradas, J.; Magyar, N.; Van Doorsselaere, T.

2018-01-01

Magnetic twist is thought to play an important role in many structures of the solar atmosphere. One of the effects of twist is to modify the properties of the eigenmodes of magnetic tubes. In the linear regime standing kink solutions are characterized by a change in polarization of the transverse displacement along the twisted tube. In the nonlinear regime, magnetic twist affects the development of shear instabilities that appear at the tube boundary when it is oscillating laterally. These Kelvin–Helmholtz instabilities (KHI) are produced either by the jump in the azimuthal component of the velocity at the edge of the sharp boundary between the internal and external part of the tube or by the continuous small length scales produced by phase mixing when there is a smooth inhomogeneous layer. In this work the effect of twist is consistently investigated by solving the time-dependent problem including the process of energy transfer to the inhomogeneous layer. It is found that twist always delays the appearance of the shear instability, but for tubes with thin inhomogeneous layers the effect is relatively small for moderate values of twist. On the contrary, for tubes with thick layers, the effect of twist is much stronger. This can have some important implications regarding observations of transverse kink modes and the KHI itself.

Investigation of MHD Instabilities in Jets and Bubbles Using a Compact Coaxial Plasma Gun in a Background Magnetized Plasma

NASA Astrophysics Data System (ADS)

Zhang, Y.; Fisher, D. M.; Wallace, B.; Gilmore, M.; Hsu, S. C.

2016-10-01

A compact coaxial plasma gun is employed for experimental investigation of launching plasma into a lower density background magnetized plasma. Experiments are being conducted in the linear device HelCat at UNM. Four distinct operational regimes with qualitatively different dynamics are identified by fast CCD camera images. For regime I plasma jet formation, a global helical magnetic configuration is determined by a B-dot probe array data. Also the m =1 kink instability is observed and verified. Furthermore, when the jet is propagating into background magnetic field, a longer length and lifetime jet is formed. Axial shear flow caused by the background magnetic tension force contributes to the increased stability of the jet body. In regime II, a spheromak-like plasma bubble formation is identified when the gun plasma is injected into vacuum. In contrast, when the bubble propagates into a background magnetic field, the closed magnetic field configuration does not hold anymore and a lateral side, Reilgh-Taylor instability develops. Detailed experimental data and analysis will be presented for these cases.

Kink effect in ultrathin FDSOI MOSFETs

NASA Astrophysics Data System (ADS)

Park, H. J.; Bawedin, M.; Choi, H. G.; Cristoloveanu, S.

2018-05-01

Systematic experiments demonstrate the presence of the kink effect even in FDSOI MOSFETs. The back-gate bias controls the kink effect via the formation of a back accumulation channel. The kink is more or less pronounced according to the film thickness and channel length. However, in ultrathin (<10 nm) and/or very short transistors (L < 50 nm), the kink is totally absent as a consequence of super-coupling effect. For the first time, thanks to the availability of body contacts, the body potential is probed to evidence the impact of majority carrier accumulation and drain pulse duration on the kink effect onset. He is currently working toward the Ph.D. degree in FDSOI device characterization and simulation at a laboratory of IMEP-lahc, Université Grenoble Alpes, Minatec, Grenoble, France. His research interests include residual floating body effects, electrical characterization, and device simulation for ultra FDSOI MOSFETs.

Sawtooth Stabilization and Onset of Alfvenic Instabilities

NASA Astrophysics Data System (ADS)

Nishimura, Y.; Cheng, C. Z.

2011-10-01

Tokamak sawtooth instabilities can be stabilized by high energy particles as a consequence of conservation of the third adiabatic invariant.On the other hand, termination of the stabilized period is reported due to the onset of Alfvenic instabilities (and thus the absence of the stabilizing mechanism). In this work, employing a kinetic-fluid model, the interaction of m=1 resistive kink mode and high energy particles is investigated. The onset of Alfvenic instabilities is examined as a function of the inversion radius location. D.J. Campbell et al., Phys. Rev. Lett. 60, 2148 (1988); F. Porcelli, Plasma Phys. Controlled Fusion 33, 1601 (1991).

On the resonance amplification of magnetic perturbations near the threshold of tearing instability in a tokamak

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arsenin, V. V., E-mail: arsenin-vv@nrcki.ru; Skovoroda, A. A., E-mail: skovoroda-aa@nrcki.ru

2015-12-15

Using a cylindrical model, a relatively simple description is presented of how a magnetic field perturbation stimulated by a low external helical current or a small helical distortion of the boundary and generating magnetic islands penetrates into a plasma column with a magnetic surface q=m/n to which tearing instability is attached. Linear analysis of the classical instability with an aperiodic growth of the perturbation in time shows that the perturbation amplitude in plasma increases in a resonant manner as the discharge parameters approach the threshold of tearing instability. In a stationary case, under the assumption on the helical character ofmore » equilibrium, which can be found from the two-dimensional nonlinear equation for the helical flux, there is no requirement for the small size of the island. Examples of calculations in which magnetic islands are large near the threshold of tearing instability are presented. The bifurcation of equilibrium near the threshold of tearing instability in plasma with a cylindrical boundary, i.e., the existence of helical equilibrium (along with cylindrical equilibrium) with large islands, is described. Moreover, helical equilibrium can also exist in the absence of instability.« less

Switch-on Shock and Nonlinear Kink Alfvén Waves in Solar Polar Jets

NASA Astrophysics Data System (ADS)

DeVore, C. Richard; Karpen, Judith T.; Antiochos, Spiro K.; Uritsky, Vadim

2016-05-01

It is widely accepted that solar polar jets are produced by fast magnetic reconnection in the low corona, whether driven directly by flux emergence from below or indirectly by instability onset above the photosphere. In either scenario, twisted flux on closed magnetic field lines reconnects with untwisted flux on nearby open field lines. Part of the twist is inherited by the newly reconnected open flux, which rapidly relaxes due to magnetic tension forces that transmit the twist impulsively into the outer corona and heliosphere. We propose that this transfer of twist launches switch-on MHD shock waves, which propagate parallel to the ambient coronal magnetic field ahead of the shock and convect a perpendicular component of magnetic field behind the shock. In the frame moving with the shock front, the post-shock flow is precisely Alfvénic in all three directions, whereas the pre-shock flow is super-Alfvénic along the ambient magnetic field, yielding a density enhancement at the shock front. Nonlinear kink Alfvén waves are exact solutions of the time-dependent MHD equations in the post-shock region when the ambient corona is uniform and the magnetic field is straight. We have performed and analyzed 3D Cartesian and spherical simulations of polar jets driven by instability onset in the corona. The results of both simulations are consistent with the generation of MHD switch-on shocks trailed predominantly by incompressible kink Alfvén waves. It is noteworthy that the kink waves are irrotational, in sharp contrast to the vorticity-bearing torsional waves reported from previous numerical studies. We will discuss the implications of the results for understanding solar polar jets and predicting their heliospheric signatures. Our research was supported by NASA’s LWS TR&T and H-SR programs.

Stochastic particle instability for electron motion in combined helical wiggler, radiation, and longitudinal wave fields

NASA Astrophysics Data System (ADS)

Davidson, Ronald C.; McMullin, Wayne A.

1982-07-01

The relativistic motion of an electron is calculated in the combined fields of a transverse helical wiggler field (axial wavelength is λ0=2πk0) and the constant-amplitude, circularly polarized primary electromagnetic wave (δBT,ω,k) propagating in the z direction. For particle velocity near the beat-wave phase velocity ω(k+k0) of the primary wave, it is shown that the presence of a second, moderate-amplitude longitudinal wave (δÊL,ω,k) or transverse electromagnetic wave (δB2,ω2,k2) can lead to stochastic particle instability in which particles trapped near the separatrix of the primary wave undergo a systematic departure from the potential well. The condition for onset of instability is calculated, and the importance of these results for free-electron-laser (FEL) application is discussed. For development of long-pulse or steady-state free-electron lasers, the maintenance of beam integrity for an extended period of time will be of considerable practical importance. The fact that the presence of secondary, moderate-amplitude longitudinal or transverse electromagnetic waves can destroy coherent motion for certain classes of beam particles moving with velocity near ω(k+k0) may lead to a degradation of beam quality and concomitant modification of FEL emission properties.

The kinked interface crack

NASA Astrophysics Data System (ADS)

Heitzer, Joerg

1992-05-01

Two methods for the numerical solution of the integral equation describing the kinked interface crack, one proposed by Erdogan et al. (1973) and the other by Theokaris and Iokimidis (1979), are examined. The method of Erdogan et al. is then used to solve the equation in order to determine the kinking angle of the interface crack. Results are presented for two material combinations, aluminum/epoxy and glass/ceramic, under uniaxial tension in the direction normal to the interface.

The external kink mode in diverted tokamaks

NASA Astrophysics Data System (ADS)

Turnbull, A. D.; Hanson, J. M.; Turco, F.; Ferraro, N. M.; Lanctot, M. J.; Lao, L. L.; Strait, E. J.; Piovesan, P.; Martin, P.

2016-06-01

> . The resistive kink behaves much like the ideal kink with predominantly kink or interchange parity and no real sign of a tearing component. However, the growth rates scale with a fractional power of the resistivity near the surface. The results have a direct bearing on the conventional edge cutoff procedures used in most ideal MHD codes, as well as implications for ITER and for future reactor options.

Kink dynamics in a topological φ4 lattice

NASA Astrophysics Data System (ADS)

Adib, A. B.; Almeida, C. A. S.

2001-09-01

Recently proposed was a discretization for nonlinear Klein-Gordon field theories in which the resulting lattice preserves the topological (Bogomol'nyi) lower bound on the kink energy and, as a consequence, has no Peierls-Nabarro barrier even for large spatial discretizations (h~1.0). It was then suggested that these ``topological discrete systems'' are a natural choice for the numerical study of continuum kink dynamics. Giving particular emphasis to the φ4 theory, we numerically investigate kink-antikink scattering and breather formation in these topological lattices. Our results indicate that, even though these systems are quite accurate for studying free kinks in coarse lattices, for legitimate dynamical kink problems the accuracy is rather restricted to fine lattices (h~0.1). We suggest that this fact is related to the breaking of the Bogomol'nyi bound during the kink-antikink interaction, where the field profile loses its static property as required by the Bogomol'nyi argument. We conclude, therefore, that these lattices are not suitable for the study of more general kink dynamics, since a standard discretization is simpler and has effectively the same accuracy for such resolutions.

A Parametric Study of Erupting Flux Rope Rotation: Modeling the 'Cartwheel CME' on 9 April 2008

NASA Technical Reports Server (NTRS)

Kliem, B.; Toeroek, T.; Thompson, W. T.

2012-01-01

The rotation of erupting filaments in the solar corona is addressed through a parametric simulation study of unstable, rotating flux ropes in bipolar force-free initial equilibrium. The Lorentz force due to the external shear-field component and the relaxation of tension in the twisted field are the major contributors to the rotation in this model, while reconnection with the ambient field is of minor importance, due to the field's simple structure. In the low-beta corona, the rotation is not guided by the changing orientation of the vertical field component's polarity inversion line with height. The model yields strong initial rotations which saturate in the corona and differ qualitatively from the profile of rotation vs. height obtained in a recent simulation of an eruption without preexisting flux rope. Both major mechanisms writhe the flux rope axis, converting part of the initial twist helicity, and produce rotation profiles which, to a large part, are very similar within a range of shear-twist combinations. A difference lies in the tendency of twist-driven rotation to saturate at lower heights than shear-driven rotation. For parameters characteristic of the source regions of erupting filaments and coronal mass ejections, the shear field is found to be the dominant origin of rotations in the corona and to be required if the rotation reaches angles of order 90 degrees and higher; it dominates even if the twist exceeds the threshold of the helical kink instability. The contributions by shear and twist to the total rotation can be disentangled in the analysis of observations if the rotation and rise profiles are simultaneously compared with model calculations. The resulting twist estimate allows one to judge whether the helical kink instability occurred. This is demonstrated for the erupting prominence in the "Cartwheel CME" on 9 April 2008, which has shown a rotation of approximately 115 deg. up to a height of 1.5 Solar R above the photosphere. Out of a range of

Small deformations of kinks and walls

NASA Astrophysics Data System (ADS)

Morris, J. R.

2018-06-01

A Rayleigh-Schrödinger type of perturbation scheme is employed to study weak self-interacting scalar potential perturbations occurring in scalar field models describing 1D domain kinks and 3D domain walls. The solutions for the unperturbed defects are modified by the perturbing potentials. An illustration is provided by adding a cubic potential to the familiar quartic kink potential and solving for the first order correction to the kink solution, using a "slab approximation". A result is the appearance of an asymmetric scalar potential with different, nondegenerate, vacuum values and the subsequent formation of vacuum bubbles.

Magnetic helicity and flux tube dynamics in the solar convection zone: Comparisons between observation and theory

NASA Astrophysics Data System (ADS)

Nandy, Dibyendu

2006-12-01

kink instability mechanism that results in the formation of δ spot or non-Hale active regions.

Coulomb double helical structure

NASA Astrophysics Data System (ADS)

Kamimura, Tetsuo; Ishihara, Osamu

2012-01-01

Structures of Coulomb clusters formed by dust particles in a plasma are studied by numerical simulation. Our study reveals the presence of various types of self-organized structures of a cluster confined in a prolate spheroidal electrostatic potential. The stable configurations depend on a prolateness parameter for the confining potential as well as on the number of dust particles in a cluster. One-dimensional string, two-dimensional zigzag structure and three-dimensional double helical structure are found as a result of the transition controlled by the prolateness parameter. The formation of stable double helical structures resulted from the transition associated with the instability of angular perturbations on double strings. Analytical perturbation study supports the findings of numerical simulations.

On the stability of the internal kink mode in the banana regime

NASA Astrophysics Data System (ADS)

Fogaccia, G.; Romanelli, F.

1995-01-01

The stability of the internal kink mode is investigated taking into account the kinetic response associated to the trapped thermal ions. Ion-ion collisions and diamagnetic effects in the layer are also considered. A significant stabilizing contribution is obtained, even at low-β values, on the mode, which might be stable, on present experiments, even though predicted unstable according to the Bussac criterion [Bussac et al., Phys. Rev. Lett. 35, 1638 (1975)]. In addition, a trapped-ion instability is found, characterized by mode frequency of the order of the trapped-ion bounce-averaged magnetic drift frequency.

Constraining Higgsino kink tracks from existing LHC searches

DOE PAGES

Jung, Sunghoon; Lee, Hye -Sung

2017-04-26

Considering the supersymmetric model with the long-lived charged Higgsino, we discuss how Higgsino kink signals can show up in the latest LHC Disappearing Track (DT) and stable chargino searches. We derive constraints on the Higgsino kink signal, and characterize it in comparison to the Wino DT and the slepton kink track. Here, we also discuss how to infer Higgsino model kinematics.

Development of kinks in car-following models

NASA Astrophysics Data System (ADS)

Kurtze, Douglas A.

2017-03-01

Many car-following models of traffic flow admit the possibility of absolute stability, a situation in which uniform traffic flow at any spacing is linearly stable. Near the threshold of absolute stability, these models can often be reduced to a modified Korteweg-deVries (mKdV) equation plus small corrections. The hyperbolic-tangent "kink" solutions of the mKdV equation are usually of particular interest, as they represent transition zones between regions of different traffic spacings. Solvability analysis is believed to show that only a single member of the one-parameter family of kink solutions is preserved by the correction terms, and this is interpreted as a kind of selection. We show, however, that the usual solvability calculation rests on an unstated, unjustified assumption, and that without this assumption it merely gives a first-order correction to the relation between the traffic spacings far behind and far ahead of the kink, rather than any kind of "selection" criterion for the family of kink solutions. On the other hand, we display a two-parameter family of traveling wave solutions of the mKdV equation, which describe regions of one traffic spacing embedded in traffic of a different spacing; this family includes the kink solutions as a limiting case. We carry out a multiple-time-scales calculation and find conditions under which the inclusions decay, conditions that lead to a selected inclusion, and conditions for which the inclusion evolves into a pair of kinks.

Scattering of the double sine-Gordon kinks

NASA Astrophysics Data System (ADS)

Gani, Vakhid A.; Marjaneh, Aliakbar Moradi; Askari, Alidad; Belendryasova, Ekaterina; Saadatmand, Danial

2018-04-01

We study the scattering of kink and antikink of the double sine-Gordon model. There is a critical value of the initial velocity v_{{cr}} of the colliding kinks, which separates different regimes of the collision. At v_{in}>v_{cr} we observe kinks reflection, while at v_{in}kinks' velocities at which the oscillons do not escape, and the final configuration looks like a bound state of two oscillons.

Strain fields induced by kink band propagation in Cu-Nb nanolaminate composites

DOE PAGES

Nizolek, T. J.; Begley, M. R.; McCabe, R. J.; ...

2017-07-01

Kink band formation is a common deformation mode for anisotropic materials and has been observed in polymer matrix fiber composites, single crystals, geological formations, and recently in metallic nanolaminates. While numerous studies have been devoted to kink band formation, the majority do not consider the often rapid and unstable process of kink band propagation. In this paper, we take advantage of stable kink band formation in Cu-Nb nanolaminates to quantitatively map the local strain fields surrounding a propagating kink band during uniaxial compression. Kink bands are observed to initiate at specimen edges, propagate across the sample during a rising globalmore » stress, and induce extended strain fields in the non-kinked material surrounding the propagating kink band. Finally, it is proposed that these stress/strain fields significantly contribute to the total energy dissipated during kinking and, analogous to crack tip stress/strain fields, influence the direction of kink propagation and therefore the kink band inclination angle.« less

Impact of helical boundary conditions in MHD modeling of RFP and tokamak plasmas

NASA Astrophysics Data System (ADS)

Bonfiglio, D.; Cappello, S.; Escande, D. F.; Piovesan, P.; Veranda, M.; Chacón, L.

2012-10-01

Helical boundary conditions imposed by the active control system of the RFX-mod device provide a handle to govern the plasma dynamics in both RFP and Ohmic tokamak discharges [1]. By applying an edge radial magnetic field with proper helicity, it is possible to increase the persistence of the spontaneous helical RFP states at high current,and to stimulate them also at low current or high density. Helical BCs even allow to access helical states with different helicity than the spontaneous one [2]. In Ohmic tokamak operation at q(a)<2, the presence of the 2/1 RWM reduces the sawtoothing activity of the 1/1 internal kink, which takes a stationary snake-like character instead. Many of these features are qualitatively reproduced in 3D nonlinear MHD modeling. We study the impact of helical BCs on the MHD dynamics in both RFP and tokamak with two successfully benchmarked numerical tools, SpeCyl and PIXIE3D [3]. We recover the bifurcation from a sawtooth to a snake solution when imposing a 2/1 BC in the tokamak case and we interpret this as a toroidal/nonlinear coupling effect. We show that the bifurcation is more easily stimulated with a 1/1 BC.[4pt] [1] P. Piovesan, invited talk this meeting[0pt] [2] M. Veranda et al EPS-ICPP Conference (2012) P4.004[0pt] [3] D. Bonfiglio et al Phys. Plasmas (2010)

Observational Signatures of a Kink-unstable Coronal Flux Rope Using Hinode /EIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Snow, B.; Botha, G. J. J.; Régnier, S.

The signatures of energy release and energy transport for a kink-unstable coronal flux rope are investigated via forward modeling. Synthetic intensity and Doppler maps are generated from a 3D numerical simulation. The CHIANTI database is used to compute intensities for three Hinode /EIS emission lines that cover the thermal range of the loop. The intensities and Doppler velocities at simulation-resolution are spatially degraded to the Hinode /EIS pixel size (1″), convolved using a Gaussian point-spread function (3″), and exposed for a characteristic time of 50 s. The synthetic images generated for rasters (moving slit) and sit-and-stare (stationary slit) are analyzedmore » to find the signatures of the twisted flux and the associated instability. We find that there are several qualities of a kink-unstable coronal flux rope that can be detected observationally using Hinode /EIS, namely the growth of the loop radius, the increase in intensity toward the radial edge of the loop, and the Doppler velocity following an internal twisted magnetic field line. However, EIS cannot resolve the small, transient features present in the simulation, such as sites of small-scale reconnection (e.g., nanoflares).« less

Mixed-mode stress intensity factors for kink cracks with finite kink length loaded in tension and bending: application to dentin and enamel.

PubMed

Bechtle, Sabine; Fett, Theo; Rizzi, Gabriele; Habelitz, Stefan; Schneider, Gerold A

2010-05-01

Fracture toughness resistance curves describe a material's resistance against crack propagation. These curves are often used to characterize biomaterials like bone, nacre or dentin as these materials commonly exhibit a pronounced increase in fracture toughness with crack extension due to co-acting mechanisms such as crack bridging, crack deflection and microcracking. The knowledge of appropriate stress intensity factors which depend on the sample and crack geometry is essential for determining these curves. For the dental biomaterials enamel and dentin it was observed that, under bending and tensile loading, crack propagation occurs under certain constant angles to the initial notch direction during testing procedures used for fracture resistance curve determination. For this special crack geometry (a kink crack of finite length in a finite body) appropriate geometric function solutions are missing. Hence, we present in this study new mixed-mode stress intensity factors for kink cracks with finite kink length within samples of finite dimensions for two loading cases (tension and bending) which were derived from a combination of mixed-mode stress intensity factors of kink cracks with infinitely small kinks and of slant cracks. These results were further applied to determine the fracture resistance curves of enamel and dentin by testing single edge notched bending (SENB) specimens. It was found that kink cracks with finite kink length exhibit identical stress fields to slant cracks as soon as the kink length exceeds 0.15 times the initial straight crack or notch length. The use of stress intensity factor solutions for infinitely small kink cracks for the determination of dentin fracture resistance curves (as was done by other researchers) leads to an overestimation of dentin's fracture resistance of up to 30%. Copyright 2010 Elsevier Ltd. All rights reserved.

Near integrability of kink lattice with higher order interactions

NASA Astrophysics Data System (ADS)

Jiang, Yun-Guo; Liu, Jia-Zhen; He, Song

2017-11-01

We make use of Manton’s analytical method to investigate the force between kinks and anti-kinks at large distances in 1+1 dimensional field theory. The related potential has infinite order corrections of exponential pattern, and the coefficients for each order are determined. These coefficients can also be obtained by solving the equation of the fluctuations around the vacuum. At the lowest order, the kink lattice represents the Toda lattice. With higher order correction terms, the kink lattice can represent one kind of generic Toda lattice. With only two sites, the kink lattice is classically integrable. If the number of sites of the lattice is larger than two, the kink lattice is not integrable but is a near integrable system. We make use of Flaschka’s variables to study the Lax pair of the kink lattice. These Flaschka’s variables have interesting algebraic relations and non-integrability can be manifested. We also discuss the higher Hamiltonians for the deformed open Toda lattice, which has a similar result to the ordinary deformed Toda. Supported by Shandong Provincial Natural Science Foundation (ZR2014AQ007), National Natural Science Foundation of China (11403015, U1531105), S. He is supported by Max-Planck fellowship in Germany and National Natural Science Foundation of China (11305235)

Reflection, transmutation, annihilation, and resonance in two-component kink collisions

NASA Astrophysics Data System (ADS)

Alonso-Izquierdo, A.

2018-02-01

In this paper, the study of collisions between kinks arising in the family of MSTB models is addressed. Phenomena such as elastic kink reflection, mutual annihilation, kink-antikink transmutation and inelastic reflection are found and depend on the impact velocity.

Linear study of the precessional fishbone instability

NASA Astrophysics Data System (ADS)

Idouakass, M.; Faganello, M.; Berk, H. L.; Garbet, X.; Benkadda, S.

2016-10-01

The precessional fishbone instability is an m = n = 1 internal kink mode destabilized by a population of trapped energetic particles. The linear phase of this instability is studied here, analytically and numerically, with a simplified model. This model uses the reduced magneto-hydrodynamics equations for the bulk plasma and the Vlasov equation for a population of energetic particles with a radially decreasing density. A threshold condition for the instability is found, as well as a linear growth rate and frequency. It is shown that the mode frequency is given by the precession frequency of the deeply trapped energetic particles at the position of strongest radial gradient. The growth rate is shown to scale with the energetic particle density and particle energy while it is decreased by continuum damping.

Altered Helical Axis Patterns of the Lumbar Spine Indicate Increased Instability with Disc Degeneration

PubMed Central

Ellingson, Arin M.; Nuckley, David J.

2014-01-01

Although the causes of low back pain are poorly defined and indistinct, degeneration of the intervertebral disc is most often implicated as the origin of pain. The biochemical and mechanical changes associated with degeneration result in the discs’ inability to maintain structure and function, leading to spinal instability and ultimately pain. Traditionally, a clinical exam assessing functional range-of-motion coupled with T2-weighted MRI revealing disc morphology are used to evaluate spinal health; however, these subjective measures fail to correlate well with pain or provide useful patient stratification. Therefore, improved quantification of spinal motion and objective MRI measures of disc health are necessary. An instantaneous helical axis (IHA) approach provides rich temporal three-dimensional data describing the pathway of motion, which is easily visualized. Eighteen cadaveric osteoligamentous lumbar spines (L4-5) from throughout the degenerative spectrum were tested in a pure moment fashion. IHA were calculated for flexion-extension and lateral bending. A correlational study design was used to determine the relationship between disc measurements from quantitative T2* MRI and IHA metrics. Increased instability and out-of-plane rotation with diminished disc health was observed during lateral bending, but not flexion-extension. This new analysis strategy examines the entire pathway of motion, rather than simplifying spinal kinematics to its terminal ends of motion and provides a more sensitive kinematic measurement of disc health. Ultimately, through the use of 3D dynamic fluoroscopy or similar methods, a patient's functional IHA in lateral bending may be measured and used to assess their disc health for diagnosis, progression tracking, and treatment evaluation. PMID:25481221

Nonlinear External Kink Computing with NIMROD

NASA Astrophysics Data System (ADS)

Bunkers, K. J.; Sovinec, C. R.

2016-10-01

Vertical displacement events (VDEs) during disruptions often include non-axisymmetric activity, including external kink modes, which are driven unstable as contact with the wall eats into the q-profile. The NIMROD code is being applied to study external-kink-unstable tokamak profiles in toroidal and cylindrical geometries. Simulations with external kinks show the plasma swallowing a vacuum bubble, similar to. NIMROD reproduces external kinks in both geometries, using an outer vacuum region (modeled as a plasma with a large resistivity), but as the boundary between the vacuum and plasma regions becomes more 3D, the resistivity becomes a 3D function, and it becomes more difficult for algebraic solves to converge. To help allow non-axisymmetric, nonlinear VDE calculations to proceed without restrictively small time-steps, several computational algorithms have been tested. Flexible GMRES, using a Fourier and real space representation for the toroidal angle has shown improvements. Off-diagonal preconditioning and a multigrid approach were tested and showed little improvement. A least squares finite element method (LSQFEM) has also helped improve the algebraic solve. This effort is supported by the U.S. Dept. of Energy, Award Numbers DE-FG02-06ER54850 and DE-FC02-08ER54975.

Defect Facilitated Phonon Transport through Kinks in Boron Carbide Nanowires

DOE PAGES

Zhang, Qian; Cui, Zhiguang; Wei, Zhiyong; ...

2017-05-08

Nanowires of complex morphologies, such as kinked wires, have been recently synthesized and demonstrated for novel devices and applications. However, the effects of these morphologies on thermal transport have not been well studied. Through systematic experimental measurements, we show in this paper that single-crystalline, defect-free kinks in boron carbide nanowires can pose a thermal resistance up to ~30 times larger than that of a straight wire segment of equivalent length. Analysis suggests that this pronounced resistance can be attributed to the combined effects of backscattering of highly focused phonons and required mode conversion at the kink. Interestingly, it is alsomore » found that instead of posing resistance, structural defects in the kink can actually assist phonon transport through the kink and reduce its resistance. Finally, given the common kink-like wire morphology in nanoelectronic devices and required low thermal conductivity for thermoelectric devices, these findings have important implications in precise thermal management of electronic devices and thermoelectrics.« less

Defect Facilitated Phonon Transport through Kinks in Boron Carbide Nanowires

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Qian; Cui, Zhiguang; Wei, Zhiyong

Nanowires of complex morphologies, such as kinked wires, have been recently synthesized and demonstrated for novel devices and applications. However, the effects of these morphologies on thermal transport have not been well studied. Through systematic experimental measurements, we show in this paper that single-crystalline, defect-free kinks in boron carbide nanowires can pose a thermal resistance up to ~30 times larger than that of a straight wire segment of equivalent length. Analysis suggests that this pronounced resistance can be attributed to the combined effects of backscattering of highly focused phonons and required mode conversion at the kink. Interestingly, it is alsomore » found that instead of posing resistance, structural defects in the kink can actually assist phonon transport through the kink and reduce its resistance. Finally, given the common kink-like wire morphology in nanoelectronic devices and required low thermal conductivity for thermoelectric devices, these findings have important implications in precise thermal management of electronic devices and thermoelectrics.« less

{Phi}{sup 4} kinks: Statistical mechanics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Habib, S.

1995-12-31

Some recent investigations of the thermal equilibrium properties of kinks in a 1+1-dimensional, classical {phi}{sup 4} field theory are reviewed. The distribution function, kink density, correlation function, and certain thermodynamic quantities were studied both theoretically and via large scale simulations. A simple double Gaussian variational approach within the transfer operator formalism was shown to give good results in the intermediate temperature range where the dilute gas theory is known to fail.

Polarized Kink Waves in Magnetic Elements: Evidence for Chromospheric Helical Waves

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stangalini, M.; Giannattasio, F.; Erdélyi, R.

In recent years, new high spatial resolution observations of the Sun's atmosphere have revealed the presence of a plethora of small-scale magnetic elements down to the resolution limit of the current cohort of solar telescopes (∼100–120 km on the solar photosphere). These small magnetic field concentrations, due to the granular buffeting, can support and guide several magnetohydrodynamic wave modes that would eventually contribute to the energy budget of the upper layers of the atmosphere. In this work, exploiting the high spatial and temporal resolution chromospheric data acquired with the Swedish 1 m Solar Telescope, and applying the empirical mode decompositionmore » technique to the tracking of the solar magnetic features, we analyze the perturbations of the horizontal velocity vector of a set of chromospheric magnetic elements. We find observational evidence that suggests a phase relation between the two components of the velocity vector itself, resulting in its helical motion.« less

The Physics of Local Helicity Injection Non-Solenoidal Tokamak Startup

NASA Astrophysics Data System (ADS)

Redd, A. J.; Barr, J. L.; Bongard, M. W.; Fonck, R. J.; Hinson, E. T.; Jardin, S.

2013-10-01

Non-solenoidal startup via Local Helicity Injection (LHI) uses compact current injectors to produce toroidal plasma current Ip up to 170 kA in the PEGASUS Toroidal Experiment, driven by 4-8 kA injector current on timescales of 5-20 milliseconds. Increasing the Ip buildup duration enables experimental demonstration of plasma position control on timescales relevant for high-current startup. LHI-driven discharges exhibit bursty MHD activity, apparently line-tied kinking of LHI-driven field lines, with the bursts correlating with rapid equilibrium changes, sharp Ip rises, and sharp drops in the injector impedance. Preliminary NIMROD results suggest that helical LHI-driven current channels remain coherent, with Ip increases due to reconnection between adjacent helical turns forming axisymmetric plasmoids, and corresponding sharp drops in the bias circuit impedance. The DC injector impedance is consistent with a space charge limit at low bias current and a magnetic limit at high bias current. Internal measurements show the current density profile starts strongly hollow and rapidly fills in during Ip buildup. Simulations of LHI discharges using the Tokamak Simulation Code (TSC) will provide insight into the detailed current drive mechanism and guide experiments on PEFASUS and NSTX-U. Work supported by US DOE Grants DE-FG02-96ER54375 and DE-SC0006928.

SPATIAL DAMPING OF PROPAGATING KINK WAVES IN PROMINENCE THREADS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soler, R.; Oliver, R.; Ballester, J. L., E-mail: roberto.soler@wis.kuleuven.be

Transverse oscillations and propagating waves are frequently observed in threads of solar prominences/filaments and have been interpreted as kink magnetohydrodynamic (MHD) modes. We investigate the spatial damping of propagating kink MHD waves in transversely nonuniform and partially ionized prominence threads. Resonant absorption and ion-neutral collisions (Cowling's diffusion) are the damping mechanisms taken into account. The dispersion relation of resonant kink waves in a partially ionized magnetic flux tube is numerically solved by considering prominence conditions. Analytical expressions of the wavelength and damping length as functions of the kink mode frequency are obtained in the thin tube and thin boundary approximations.more » For typically reported periods of thread oscillations, resonant absorption is an efficient mechanism for the kink mode spatial damping, while ion-neutral collisions have a minor role. Cowling's diffusion dominates both the propagation and damping for periods much shorter than those observed. Resonant absorption may explain the observed spatial damping of kink waves in prominence threads. The transverse inhomogeneity length scale of the threads can be estimated by comparing the observed wavelengths and damping lengths with the theoretically predicted values. However, the ignorance of the form of the density profile in the transversely nonuniform layer introduces inaccuracies in the determination of the inhomogeneity length scale.« less

Optimization of Kink Stability in High-Beta Quasi-axisymmetric Stellarators

NASA Astrophysics Data System (ADS)

Fu, G. Y.; Ku, L.-P.; Manickam, J.; Cooper, W. A.

1998-11-01

A key issue for design of Quasi-axisymmetric stellarators( A. Reiman et al, this conference.) (QAS) is the stability of external kink modes driven by pressure-induced bootstrap current. In this work, the 3D MHD stability code TERPSICHORE(W.A. Cooper, Phys. Plasmas 3), 275(1996). is used to calculate the stability of low-n external kink modes in a high-beta QAS. The kink stability is optimized by adjusting plasma boundary shape (i.e., external coil configuration) as well as plasma pressure and current profiles. For this purpose, the TERPSICHORE code has been implemented successfully in an optimizer which maximizes kink stability as well as quasi-symmetry. A key factor for kink stability is rotational transform profile. It is found that the edge magnetic shear is strongly stabilizing. The amount of the shear needed for complete stabilization increases with edge transform. It is also found that the plasma boundary shape plays an important role in the kink stability besides transform profile. The physics mechanisms for the kink stability are being studied by examining the contributions of individual terms in δ W of the energy principle: the field line bending term, the current-driven term, the pressure-driven term, and the vacuum term. Detailed results will be reported.

Emergent kink statistics at finite temperature

DOE PAGES

Lopez-Ruiz, Miguel Angel; Yepez-Martinez, Tochtli; Szczepaniak, Adam; ...

2017-07-25

In this paper we use 1D quantum mechanical systems with Higgs-like interaction potential to study the emergence of topological objects at finite temperature. Two different model systems are studied, the standard double-well potential model and a newly introduced discrete kink model. Using Monte-Carlo simulations as well as analytic methods, we demonstrate how kinks become abundant at low temperatures. These results may shed useful insights on how topological phenomena may occur in QCD.

Effects of Magnetic and Kinetic Helicities on the Growth of Magnetic Fields in Laminar and Turbulent Flows by Helical Fourier Decomposition

DOE Office of Scientific and Technical Information (OSTI.GOV)

Linkmann, Moritz; Sahoo, Ganapati; Biferale, Luca

We present a numerical and analytical study of incompressible homogeneous conducting fluids using a helical Fourier representation. We analytically study both small- and large-scale dynamo properties, as well as the inverse cascade of magnetic helicity, in the most general minimal subset of interacting velocity and magnetic fields on a closed Fourier triad. We mainly focus on the dependency of magnetic field growth as a function of the distribution of kinetic and magnetic helicities among the three interacting wavenumbers. By combining direct numerical simulations of the full magnetohydrodynamics equations with the helical Fourier decomposition, we numerically confirm that in the kinematicmore » dynamo regime the system develops a large-scale magnetic helicity with opposite sign compared to the small-scale kinetic helicity, a sort of triad-by-triad α -effect in Fourier space. Concerning the small-scale perturbations, we predict theoretically and confirm numerically that the largest instability is achived for the magnetic component with the same helicity of the flow, in agreement with the Stretch–Twist–Fold mechanism. Vice versa, in the presence of Lorentz feedback on the velocity, we find that the inverse cascade of magnetic helicity is mostly local if magnetic and kinetic helicities have opposite signs, while it is more nonlocal and more intense if they have the same sign, as predicted by the analytical approach. Our analytical and numerical results further demonstrate the potential of the helical Fourier decomposition to elucidate the entangled dynamics of magnetic and kinetic helicities both in fully developed turbulence and in laminar flows.« less

Simulation of Non-resonant Internal Kink Mode with Toroidal Rotation in NSTX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fu, Guoyong

2013-07-16

Plasmas in spherical and conventional tokamaks, with weakly reversed shear q pro le and minimum q above but close to unity, are susceptible to an non-resonant (m, n ) = (1, 1) internal kink mode. This mode can saturate and persist and can induce a (2; 1) seed island for Neoclassical Tearing Mode (NTMs)1 . The mode can also lead to large energetic particle transport and signi cant broadening of beam-driven current. Motivated by these important e ects, we have carried out extensive nonlinear simulations of the mode with nite toroidal rotation using parameters and pro les of an NTSXmore » plasma with a weakly reversed shear pro le. The numerical results show that, at the experimental level, plasma rotation has little e ect on either equilibrium or linear stability. However, rotation can signi cantly inuence the nonlinear dynamics of the (1, 1) mode and the the induced (2, 1) magnetic island. The simulation results show that a rotating helical equilibrium is formed and maintained in the nonlinear phase at nite plasma rotation. In contrast, for non-rotating cases, the nonlinear evolution exhibits dynamic oscillations between a quasi-2D state and a helical state. Furthermore, the e ects of rotation are found to greatly suppress the (2, 1) magnetic island even at a low level.« less

Modeling of toroidal torques exerted by internal kink instability in a tokamak plasma

NASA Astrophysics Data System (ADS)

Zhang, N.; Liu, Y. Q.; Yu, D. L.; Wang, S.; Xia, G. L.; Dong, G. Q.; Bai, X.

2017-08-01

Toroidal modeling efforts are initiated to systematically compute and compare various toroidal torques, exerted by an unstable internal kink in a tokamak plasma, using the MARS-F/K/Q suite of codes. The torques considered here include the resonant electromagnetic torque due to the Maxwell stress (the EM or JXB torque), the neoclassical toroidal viscous (NTV) torque, and the torque associated with the Reynolds stress. Numerical results show that the relative magnitude of the net resonant electromagnetic and the Reynolds stress torques increases with the equilibrium flow speed of the plasma, whilst the net NTV torque follows the opposite trend. The global flow shear sensitively affects the Reynolds stress torque, but not the electromagnetic and the NTV torques. Detailed examinations reveal dominant contributions to the Maxwell and Reynolds stress torques, in terms of the poloidal harmonic numbers of various perturbation fields, as well as their relative toroidal phasing.

Taming instability of magnetic field in chiral medium

NASA Astrophysics Data System (ADS)

Tuchin, Kirill

2018-01-01

Magnetic field is unstable in a medium with time-independent chiral conductivity. Owing to the chiral anomaly, the electromagnetic field and the medium exchange helicity which results in time-evolution of the chiral conductivity. Using the fastest growing momentum and helicity state of the vector potential as an ansatz, the time-evolution of the chiral conductivity and magnetic field is solved analytically. The solution for the hot and cold equations of state shows that the magnetic field does not develop an instability due to helicity conservation. Moreover, as a function of time, it develops a peak only if a significant part of the initial helicity is stored in the medium. The initial helicity determines the height and position of the peak.

Evolution of sausage and helical modes in magnetized thin-foil cylindrical liners driven by a Z-pinch

NASA Astrophysics Data System (ADS)

Yager-Elorriaga, D. A.; Lau, Y. Y.; Zhang, P.; Campbell, P. C.; Steiner, A. M.; Jordan, N. M.; McBride, R. D.; Gilgenbach, R. M.

2018-05-01

In this paper, we present experimental results on axially magnetized (Bz = 0.5 - 2.0 T), thin-foil (400 nm-thick) cylindrical liner-plasmas driven with ˜600 kA by the Michigan Accelerator for Inductive Z-Pinch Experiments, which is a linear transformer driver at the University of Michigan. We show that: (1) the applied axial magnetic field, irrespective of its direction (e.g., parallel or anti-parallel to the flow of current), reduces the instability amplitude for pure magnetohydrodynamic (MHD) modes [defined as modes devoid of the acceleration-driven magneto-Rayleigh-Taylor (MRT) instability]; (2) axially magnetized, imploding liners (where MHD modes couple to MRT) generate m = 1 or m = 2 helical modes that persist from the implosion to the subsequent explosion stage; (3) the merging of instability structures is a mechanism that enables the appearance of an exponential instability growth rate for a longer than expected time-period; and (4) an inverse cascade in both the axial and azimuthal wavenumbers, k and m, may be responsible for the final m = 2 helical structure observed in our experiments. These experiments are particularly relevant to the magnetized liner inertial fusion program pursued at Sandia National Laboratories, where helical instabilities have been observed.

MHD instabilities in astrophysical plasmas: very different from MHD instabilities in tokamaks!

NASA Astrophysics Data System (ADS)

Goedbloed, J. P.

2018-01-01

The extensive studies of MHD instabilities in thermonuclear magnetic confinement experiments, in particular of the tokamak as the most promising candidate for a future energy producing machine, have led to an ‘intuitive’ description based on the energy principle that is very misleading for most astrophysical plasmas. The ‘intuitive’ picture almost directly singles out the dominant stabilizing field line bending energy of the Alfvén waves and, consequently, concentrates on expansion schemes that minimize that contribution. This happens when the wave vector {{k}}0 of the perturbations, on average, is perpendicular to the magnetic field {B}. Hence, all macroscopic instabilities of tokamaks (kinks, interchanges, ballooning modes, ELMs, neoclassical tearing modes, etc) are characterized by satisfying the condition {{k}}0 \\perp {B}, or nearly so. In contrast, some of the major macroscopic instabilities of astrophysical plasmas (the Parker instability and the magneto-rotational instability) occur when precisely the opposite condition is satisfied: {{k}}0 \\parallel {B}. How do those instabilities escape from the dominance of the stabilizing Alfvén wave? The answer to that question involves, foremost, the recognition that MHD spectral theory of waves and instabilities of laboratory plasmas could be developed to such great depth since those plasmas are assumed to be in static equilibrium. This assumption is invalid for astrophysical plasmas where rotational and gravitational accelerations produce equilibria that are at best stationary, and the associated spectral theory is widely, and incorrectly, believed to be non-self adjoint. These complications are addressed, and cured, in the theory of the Spectral Web, recently developed by the author. Using this method, an extensive survey of instabilities of astrophysical plasmas demonstrates how the Alfvén wave is pushed into insignificance under these conditions to give rise to a host of instabilities that do not

Kinks in higher derivative scalar field theory

NASA Astrophysics Data System (ADS)

Zhong, Yuan; Guo, Rong-Zhen; Fu, Chun-E.; Liu, Yu-Xiao

2018-07-01

We study static kink configurations in a type of two-dimensional higher derivative scalar field theory whose Lagrangian contains second-order derivative terms of the field. The linear fluctuation around arbitrary static kink solutions is analyzed. We find that, the linear spectrum can be described by a supersymmetric quantum mechanics problem, and the criteria for stable static solutions can be given analytically. We also construct a superpotential formalism for finding analytical static kink solutions. Using this formalism we first reproduce some existed solutions and then offer a new solution. The properties of our solution is studied and compared with those preexisted. We also show the possibility in constructing twinlike model in the higher derivative theory, and give the consistency conditions for twinlike models corresponding to the canonical scalar field theory.

Quasi-two-dimensional nonlinear evolution of helical magnetorotational instability in a magnetized Taylor-Couette flow

NASA Astrophysics Data System (ADS)

Mamatsashvili, G.; Stefani, F.; Guseva, A.; Avila, M.

2018-01-01

Magnetorotational instability (MRI) is one of the fundamental processes in astrophysics, driving angular momentum transport and mass accretion in a wide variety of cosmic objects. Despite much theoretical/numerical and experimental efforts over the last decades, its saturation mechanism and amplitude, which sets the angular momentum transport rate, remains not well understood, especially in the limit of high resistivity, or small magnetic Prandtl numbers typical to interiors (dead zones) of protoplanetary disks, liquid cores of planets and liquid metals in laboratory. Using direct numerical simulations, in this paper we investigate the nonlinear development and saturation properties of the helical magnetorotational instability (HMRI)—a relative of the standard MRI—in a magnetized Taylor-Couette flow at very low magnetic Prandtl number (correspondingly at low magnetic Reynolds number) relevant to liquid metals. For simplicity, the ratio of azimuthal field to axial field is kept fixed. From the linear theory of HMRI, it is known that the Elsasser number, or interaction parameter determines its growth rate and plays a special role in the dynamics. We show that this parameter is also important in the nonlinear problem. By increasing its value, a sudden transition from weakly nonlinear, where the system is slightly above the linear stability threshold, to strongly nonlinear, or turbulent regime occurs. We calculate the azimuthal and axial energy spectra corresponding to these two regimes and show that they differ qualitatively. Remarkably, the nonlinear state remains in all cases nearly axisymmetric suggesting that this HMRI-driven turbulence is quasi two-dimensional in nature. Although the contribution of non-axisymmetric modes increases moderately with the Elsasser number, their total energy remains much smaller than that of the axisymmetric ones.

Fifty Shades of Stigma: Exploring the Health Care Experiences of Kink-Oriented Patients.

PubMed

Waldura, Jessica F; Arora, Ishika; Randall, Anna M; Farala, John Paul; Sprott, Richard A

2016-12-01

The term kink describes sexual behaviors and identities encompassing bondage, discipline, domination and submission, and sadism and masochism (collectively known as BDSM) and sexual fetishism. Individuals who engage in kink could be at risk for health complications because of their sexual behaviors, and they could be vulnerable to stigma in the health care setting. However, although previous research has addressed experiences in mental health care, very little research has detailed the medical care experiences of kink-oriented patients. To broadly explore the health care experiences of kink-oriented patients using a community-engaged research approach. As part of the Kink Health Project, we gathered qualitative data from 115 kink-oriented San Francisco area residents using focus groups and interviews. Interview questions were generated in collaboration with a community advisory board. Data were analyzed using a thematic analysis approach. Themes relating to kink-oriented patients' experience with health and healthcare. Major themes included (i) kink and physical health, (ii) sociocultural aspects of kink orientation, (iii) the role of stigma in shaping health care interactions, (iv) coming out to health care providers, and (v) working toward a vision of kink-aware medical care. The study found that kink-oriented patients have genuine health care needs relating to their kink behaviors and social context. Most patients would prefer to be out to their health care providers so they can receive individualized care. However, fewer than half were out to their current provider, with anticipated stigma being the most common reason for avoiding disclosure. Patients are often concerned that clinicians will confuse their behaviors with intimate partner violence and they emphasized the consensual nature of their kink interactions. Like other sexual minorities, kink-oriented patients have a desire to engage with their health care providers in meaningful discussions about

Characterization of individual straight and kinked boron carbide nanowires

NASA Astrophysics Data System (ADS)

Cui, Zhiguang

Boron carbides represent a class of ceramic materials with p-type semiconductor natures, complex structures and a wide homogeneous range of carbon compositions. Bulk boron carbides have long been projected as promising high temperature thermoelectric materials, but with limited performance. Bringing the bulk boron carbides to low dimensions (e.g., nanowires) is believed to be an option to enhance their thermoelectric performance because of the quantum size effects. However, the fundamental studies on the microstructure-thermal property relation of boron carbide nanowires are elusive. In this dissertation work, systematic structural characterization and thermal conductivity measurement of individual straight and kinked boron carbide nanowires were carried out to establish the true structure-thermal transport relation. In addition, a preliminary Raman spectroscopy study on identifying the defects in individual boron carbide nanowires was conducted. After the synthesis of single crystalline boron carbide nanowires, straight nanowires accompanied by the kinked ones were observed. Detailed structures of straight boron carbide nanowires have been reported, but not the kinked ones. After carefully examining tens of kinked nanowires utilizing Transmission Electron Microscopy (TEM), it was found that they could be categorized into five cases depending on the stacking faults orientations in the two arms of the kink: TF-TF, AF-TF, AF-AF, TF-IF and AF-IF kinks, in which TF, AF and IF denotes transverse faults (preferred growth direction perpendicular to the stacking fault planes), axial faults (preferred growth direction in parallel with the stacking fault planes) and inclined faults (preferred growth direction neither perpendicular to nor in parallel with the stacking fault planes). Simple structure models describing the characteristics of TF-TF, AF-TF, AF-AF kinked nanowires are constructed in SolidWorks, which help to differentiate the kinked nanowires viewed from the zone

Generation of large-scale vorticity in rotating stratified turbulence with inhomogeneous helicity: mean-field theory

NASA Astrophysics Data System (ADS)

Kleeorin, N.

2018-06-01

We discuss a mean-field theory of the generation of large-scale vorticity in a rotating density stratified developed turbulence with inhomogeneous kinetic helicity. We show that the large-scale non-uniform flow is produced due to either a combined action of a density stratified rotating turbulence and uniform kinetic helicity or a combined effect of a rotating incompressible turbulence and inhomogeneous kinetic helicity. These effects result in the formation of a large-scale shear, and in turn its interaction with the small-scale turbulence causes an excitation of the large-scale instability (known as a vorticity dynamo) due to a combined effect of the large-scale shear and Reynolds stress-induced generation of the mean vorticity. The latter is due to the effect of large-scale shear on the Reynolds stress. A fast rotation suppresses this large-scale instability.

Influence of helical external driven current on nonlinear resistive tearing mode evolution and saturation in tokamaks

NASA Astrophysics Data System (ADS)

Zhang, W.; Wang, S.; Ma, Z. W.

2017-06-01

The influences of helical driven currents on nonlinear resistive tearing mode evolution and saturation are studied by using a three-dimensional toroidal resistive magnetohydrodynamic code (CLT). We carried out three types of helical driven currents: stationary, time-dependent amplitude, and thickness. It is found that the helical driven current is much more efficient than the Gaussian driven current used in our previous study [S. Wang et al., Phys. Plasmas 23(5), 052503 (2016)]. The stationary helical driven current cannot persistently control tearing mode instabilities. For the time-dependent helical driven current with f c d = 0.01 and δ c d < 0.04 , the island size can be reduced to its saturated level that is about one third of the initial island size. However, if the total driven current increases to about 7% of the total plasma current, tearing mode instabilities will rebound again due to the excitation of the triple tearing mode. For the helical driven current with time dependent strength and thickness, the reduction speed of the radial perturbation component of the magnetic field increases with an increase in the driven current and then saturates at a quite low level. The tearing mode is always controlled even for a large driven current.

Controlling Kink Geometry in Nanowires Fabricated by Alternating Metal-Assisted Chemical Etching.

PubMed

Chen, Yun; Li, Liyi; Zhang, Cheng; Tuan, Chia-Chi; Chen, Xin; Gao, Jian; Wong, Ching-Ping

2017-02-08

Kinked silicon (Si) nanowires (NWs) have many special properties that make them attractive for a number of applications, such as microfluidics devices, microelectronic devices, and biosensors. However, fabricating NWs with controlled three-dimensional (3D) geometry has been challenging. In this work, a novel method called alternating metal-assisted chemical etching is reported for the fabrication of kinked Si NWs with controlled 3D geometry. By the use of multiple etchants with carefully selected composition, one can control the number of kinks, their locations, and their angles by controlling the number of etchant alternations and the time in each etchant. The resulting number of kinks equals the number times the etchant is alternated, the length of each segment separated by kinks has a linear relationship with the etching time, and the kinking angle is related to the surface tension and viscosity of the etchants. This facile method may provide a feasible and economical way to fabricate novel silicon nanowires, nanostructures, and devices for broad applications.

Formation mechanisms for the dominant kinks with different angles in InP nanowires.

PubMed

Zhang, Minghuan; Wang, Fengyun; Wang, Chao; Wang, Yiqian; Yip, SenPo; Ho, Johnny C

2014-01-01

The morphologies and microstructures of kinked InP nanowires (NWs) prepared by solid-source chemical vapor deposition method were examined using scanning electron microscopy (SEM) and high-resolution transmission electron microscopy (HRTEM). Statistical analysis and structural characterization reveal that four different kinds of kinks are dominant in the grown InP NWs with a bending angle of approximately 70°, 90°, 110°, and 170°, respectively. The formation mechanisms of these kinks are discussed. Specifically, the existence of kinks with bending angles of approximately 70° and 110° are mainly attributed to the occurrence of stacking faults and nanotwins in the NWs, which could easily form by the glide of {111} planes, while approximately 90° kinks result from the local amorphorization of InP NWs. Also, approximately 170° kinks are mainly caused by small-angle boundaries, where the insertion of extra atomic planes could make the NWs slightly bent. In addition, multiple kinks with various angles are also observed. Importantly, all these results are beneficial to understand the formation mechanisms of kinks in compound semiconductor NWs, which could guide the design of nanostructured materials, morphologies, microstructures, and/or enhanced mechanical properties.

Formation mechanisms for the dominant kinks with different angles in InP nanowires

PubMed Central

2014-01-01

The morphologies and microstructures of kinked InP nanowires (NWs) prepared by solid-source chemical vapor deposition method were examined using scanning electron microscopy (SEM) and high-resolution transmission electron microscopy (HRTEM). Statistical analysis and structural characterization reveal that four different kinds of kinks are dominant in the grown InP NWs with a bending angle of approximately 70°, 90°, 110°, and 170°, respectively. The formation mechanisms of these kinks are discussed. Specifically, the existence of kinks with bending angles of approximately 70° and 110° are mainly attributed to the occurrence of stacking faults and nanotwins in the NWs, which could easily form by the glide of {111} planes, while approximately 90° kinks result from the local amorphorization of InP NWs. Also, approximately 170° kinks are mainly caused by small-angle boundaries, where the insertion of extra atomic planes could make the NWs slightly bent. In addition, multiple kinks with various angles are also observed. Importantly, all these results are beneficial to understand the formation mechanisms of kinks in compound semiconductor NWs, which could guide the design of nanostructured materials, morphologies, microstructures, and/or enhanced mechanical properties. PMID:24910572

Frenkel-Kontorova model with a transversal degree of freedom: Static properties of kinks

NASA Astrophysics Data System (ADS)

Braun, Oleg M.; Chubykalo, Oksana A.; Kivshar, Yuri S.; Vázquez, Luis

1993-08-01

We consider a generalized Frenkel-Kontorova (FK) model with a transversal degree of freedom proposed by Braun and Kivshar [Phys. Rev. B 44, 7694 (1991)]. The model describes an atomic chain subjected to a two-dimensional (2D) substrate potential that is periodic in one direction and parabolic in the transversal direction, the interatomic interaction being exponentially repulsive. The ground state of the system undergoes a phase transition from the trivial one-dimensional (1D) to a quasi-2D state when the repulsion exceeds a certain critical value. The quasi-2D ground state admits two different types of kinks, ``massive,'' kinks which may be considered as a generalization of the kinks of the standard 1D FK chain, and ``nonmassive'' (phase) kinks, which appear to be due to dimerization of the ground state. We investigate the static characteristics of these two kinds of the kinks (the kink effective mass, the kink rest energy, and the height of the Peierls-Nabarro potential) analytically as well as by means of numerical simulations when the chain with the periodic boundary conditions contains a single kink. In particular, we show that the ``massive'' kinks may be described in the continuum approximation by a perturbed sine-Gordon equation while properties of the ``nonmassive'' kinks may be analyzed within the framework of an effective φ4 model derived for translational displacements. The role of the transversal degree of freedom in mass-transport properties of the generalized FK model applied to describe surface diffusion is also discussed.

Tomographic reconstruction of heat release rate perturbations induced by helical modes in turbulent swirl flames

NASA Astrophysics Data System (ADS)

Moeck, Jonas P.; Bourgouin, Jean-François; Durox, Daniel; Schuller, Thierry; Candel, Sébastien

2013-04-01

Swirl flows with vortex breakdown are widely used in industrial combustion systems for flame stabilization. This type of flow is known to sustain a hydrodynamic instability with a rotating helical structure, one common manifestation of it being the precessing vortex core. The role of this unsteady flow mode in combustion is not well understood, and its interaction with combustion instabilities and flame stabilization remains unclear. It is therefore important to assess the structure of the perturbation in the flame that is induced by this helical mode. Based on principles of tomographic reconstruction, a method is presented to determine the 3-D distribution of the heat release rate perturbation associated with the helical mode. Since this flow instability is rotating, a phase-resolved sequence of projection images of light emitted from the flame is identical to the Radon transform of the light intensity distribution in the combustor volume and thus can be used for tomographic reconstruction. This is achieved with one stationary camera only, a vast reduction in experimental and hardware requirements compared to a multi-camera setup or camera repositioning, which is typically required for tomographic reconstruction. Different approaches to extract the coherent part of the oscillation from the images are discussed. Two novel tomographic reconstruction algorithms specifically tailored to the structure of the heat release rate perturbations related to the helical mode are derived. The reconstruction techniques are first applied to an artificial field to illustrate the accuracy. High-speed imaging data acquired in a turbulent swirl-stabilized combustor setup with strong helical mode oscillations are then used to reconstruct the 3-D structure of the associated perturbation in the flame.

A current-driven resistive instability and its nonlinear effects in simulations of coaxial helicity injection in a tokamak

DOE PAGES

Hooper, E. B.; Sovinec, C. R.

2016-10-06

An instability observed in whole-device, resistive magnetohydrodynamic simulations of the driven phase of coaxial helicity injection in the National Spherical Torus eXperiment is identified as a current-driven resistive mode in an unusual geometry that transiently generates a current sheet. The mode consists of plasma flow velocity and magnetic field eddies in a tube aligned with the magnetic field at the surface of the injected magnetic flux. At low plasma temperatures (~10–20 eV), the mode is benign, but at high temperatures (~100 eV) its amplitude undergoes relaxation oscillations, broadening the layer of injected current and flow at the surface of themore » injected toroidal flux and background plasma. The poloidal-field structure is affected and the magnetic surface closure is generally prevented while the mode undergoes relaxation oscillations during injection. Furthermore, this study describes the mode and uses linearized numerical computations and an analytic slab model to identify the unstable mode.« less

Resistive MHD Simulation of Quasi-Single-Helicity State on KTX

NASA Astrophysics Data System (ADS)

Luo, Bing; Zhu, Ping; Li, Hong; Liu, Wandong

2016-10-01

The potential formation of quasi-single-helicity (QSH) state on Keda Torus eXperiment (KTX) is evaluated in resistive MHD simulations using the NIMROD code. In this work, we focus on the effects of finite resistivity on the mode structure and characteristics of the dominant linear and nonlinear resistive tearing-mode instability in a finite β, cylindrical reversed field pinch model configuration for KTX. In the typical resistivity regimes of KTX where Lundquist number S =105 , the plasma reaches a steady QSH state after the initial transient phase of multiple helicities. The dominat mode of the QSH state is developed from the dominat linear tearing mode instability. The conditions for and the variations of the formation of QSH states in different resistivity regimes of KTX will be reported and discussed. Supported by National Magnetic Confinement Fusion Science Program of China Grant Nos. 2014GB124002, 2015GB101004, 2011GB106000, and 2011GB106003.

Magnetic Helicity Injection and Thermal Transport

NASA Astrophysics Data System (ADS)

Moses, Ronald; Gerwin, Richard; Schoenberg, Kurt

1999-11-01

In magnetic helicity injection, a current is driven between electrodes, parallel to the magnetic field in the edge plasma of a machine.^1 Plasma instabilities distribute current throughout the plasma. To model the injection of magnetic helicity, K, into an arbitrary closed surface, K is defined as the volume integral of A^.B. To make K unique, a gauge is chosen where the tangential surface components of A are purely solenoidal. If magnetic fields within a plasma are time varying, yet undergo no macroscopic changes over an extended period, and if the plasma is subject to an Ohm’s law with Hall terms, then it is shown that no closed magnetic surfaces with sustained internal currents can exist continuously within the plasma.^2 It is also shown that parallel thermal transport connects all parts of the plasma to the helicity injection electrodes and requires the electrode voltage difference to be at least 2.5 to 3 times the peak plasma temperature. This ratio is almost independent of the length of the electron mean-free path. If magnetic helicity injection is to be used for fusion-grade plasmas, then high-voltage, high-impedance injection techniques must be developed. ^1T. R. Jarboe, Plasma Physics and Controlled Fusion, V36, 945-990 (June 1994). ^2R. W. Moses, 1991 Sherwood International Fusion Theory Conference, Seattle, WA (April 22-24, 1991).

Sensual, erotic, and sexual behaviors of women from the "kink" community.

PubMed

Rehor, Jennifer Eve

2015-05-01

Unconventional sensual, erotic, and sexual behaviors (herein referred to as kink behaviors) investigated by academia are based largely on clinical and criminal cases, and most published, peer-reviewed, quantitative research on these behaviors is based almost exclusively on male participants. For this study, information was collected and analyzed from 1580 female participants recruited from the kink community, using a non-clinical and non-criminal sample. We explored and described the preferences and diversity of more than 126 sensual, erotic, and sexual behaviors found among these participants, along with recommendations for continued research. Gaining a better understanding of the breadth and depth of activities engaged in by female kink practitioners could benefit educators, counselors, therapists, medical doctors, and other professionals when interacting with members of the kink community.

Proline Kink Angle Distributions for GWALP23 in Lipid Bilayers of Different Thickness†

PubMed Central

Rankenberg, Johanna M.; Vostrikov, Vitaly V.; DuVall, Christopher D.; Greathouse, Denise V.; Koeppe, Roger E.; Grant, Christopher V.; Opella, Stanley J.

2013-01-01

By using selected 2H and 15N labels, we have examined the influence of a central proline residue upon the properties of a defined peptide that spans lipid bilayer membranes by solid-state NMR spectroscopy. For this purpose, GWALP23 (acetyl-GGALW5LALALALALALALW19LAGA-ethanolamide) is a suitable model peptide that employs—for the purpose of interfacial anchoring—only one tryptophan residue on either end of a central alpha-helical core sequence. Because of its systematic behavior in lipid bilayer membranes of differing thickness (see J. Biol. Chem. 285, 31723), we utilize GWALP23 as a well-characterized framework for introducing guest residues within a transmembrane sequence; for example, a central proline yields acetyl-GGALW5LALALAP12ALALALW19LAGA-ethanolamide. We synthesized the GWALP23-P12 with specifically placed 2H and 15N labels for solid-state NMR spectroscopy, and examined the peptide orientation and segmental tilt in oriented DMPC lipid bilayer membranes using combined (2H)-GALA and (15N-1H) high resolution separated local field methods. In DMPC bilayer membranes, the peptide segments N-terminal and C-terminal to the proline are both tilted substantially with respect to the bilayer normal, by about 34° and 29° (± 5°), respectively. While the tilt increases for both segments when proline is present, the range and extent of the individual segment motions are comparable or less than those of the entire GWALP23 peptide in bilayer membranes. In DMPC, the proline induces a kink of about 30° (± 5°), with an apparent helix unwinding or “swivel” angle of about 70°. In DLPC and DOPC, based on 2H NMR data only, the kink angle and swivel angle probability distributions overlap those of DMPC, yet the most probable kink angle appears somewhat smaller than in DMPC. As has been described for GWALP23 itself, the C-terminal helix ends before Ala-21 in the phospholipids DMPC and DLPC, yet remains intact through Ala-21 in DOPC. The dynamics of bilayer

Edge plasma boundary layer generated by kink modes in tokamaks

NASA Astrophysics Data System (ADS)

Zakharov, Leonid E.

2011-06-01

This paper describes the structure of the electric current generated by external wall touching and free boundary kink modes at the plasma edge using the ideally conducting plasma model. Both kinds of modes generate δ-functional surface current at the plasma edge. Free boundary kink modes also perturb the core plasma current, which in the plasma edge compensates the difference between the δ-functional surface currents of free boundary and wall touching kink modes. In addition, the resolution of an apparent paradox with the pressure balance across the plasma boundary in the presence of the surface currents is provided.

Use of reconstructed 3D equilibria to determine onset conditions of helical cores in tokamaks for extrapolation to ITER

NASA Astrophysics Data System (ADS)

Wingen, A.; Wilcox, R. S.; Seal, S. K.; Unterberg, E. A.; Cianciosa, M. R.; Delgado-Aparicio, L. F.; Hirshman, S. P.; Lao, L. L.

2018-03-01

Large, spontaneous m/n  =  1/1 helical cores are shown to be expected in tokamaks such as ITER with extended regions of low- or reversed- magnetic shear profiles and q near 1 in the core. The threshold for this spontaneous symmetry breaking is determined using VMEC scans, beginning with reconstructed 3D equilibria from DIII-D and Alcator C-Mod based on observed internal 3D deformations. The helical core is a saturated internal kink mode (Wesson 1986 Plasma Phys. Control. Fusion 28 243); its onset threshold is shown to be proportional to (dp/dρ)/B_t2 around q  =  1. Below the threshold, applied 3D fields can drive a helical core to finite size, as in DIII-D. The helical core size thereby depends on the magnitude of the applied perturbation. Above it, a small, random 3D kick causes a bifurcation from axisymmetry and excites a spontaneous helical core, which is independent of the kick size. Systematic scans of the q-profile show that the onset threshold is very sensitive to the q-shear in the core. Helical cores occur frequently in Alcator C-Mod during ramp-up when slow current penetration results in a reversed shear q-profile, which is favorable for helical core formation. Finally, a comparison of the helical core onset threshold for discharges from DIII-D, Alcator C-Mod and ITER confirms that while DIII-D is marginally stable, Alcator C-Mod and especially ITER are highly susceptible to helical core formation without being driven by an externally applied 3D magnetic field.

Use of reconstructed 3D equilibria to determine onset conditions of helical cores in tokamaks for extrapolation to ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wingen, A.; Wilcox, R. S.; Seal, S. K.

In this paper, large, spontaneous m/n = 1/1 helical cores are shown to be expected in tokamaks such as ITER with extended regions of low- or reversed- magnetic shear profiles and q near 1 in the core. The threshold for this spontaneous symmetry breaking is determined using VMEC scans, beginning with reconstructed 3D equilibria from DIII-D and Alcator C-Mod based on observed internal 3D deformations. The helical core is a saturated internal kink mode (Wesson 1986 Plasma Phys. Control. Fusion 28 243); its onset threshold is shown to be proportional tomore » $$({\\rm d}p/{\\rm d}\\rho)/B_t^2$$ around q = 1. Below the threshold, applied 3D fields can drive a helical core to finite size, as in DIII-D. The helical core size thereby depends on the magnitude of the applied perturbation. Above it, a small, random 3D kick causes a bifurcation from axisymmetry and excites a spontaneous helical core, which is independent of the kick size. Systematic scans of the q-profile show that the onset threshold is very sensitive to the q-shear in the core. Helical cores occur frequently in Alcator C-Mod during ramp-up when slow current penetration results in a reversed shear q-profile, which is favorable for helical core formation. In conclusion, a comparison of the helical core onset threshold for discharges from DIII-D, Alcator C-Mod and ITER confirms that while DIII-D is marginally stable, Alcator C-Mod and especially ITER are highly susceptible to helical core formation without being driven by an externally applied 3D magnetic field.« less

Use of reconstructed 3D equilibria to determine onset conditions of helical cores in tokamaks for extrapolation to ITER

DOE PAGES

Wingen, A.; Wilcox, R. S.; Seal, S. K.; ...

2018-01-15

In this paper, large, spontaneous m/n = 1/1 helical cores are shown to be expected in tokamaks such as ITER with extended regions of low- or reversed- magnetic shear profiles and q near 1 in the core. The threshold for this spontaneous symmetry breaking is determined using VMEC scans, beginning with reconstructed 3D equilibria from DIII-D and Alcator C-Mod based on observed internal 3D deformations. The helical core is a saturated internal kink mode (Wesson 1986 Plasma Phys. Control. Fusion 28 243); its onset threshold is shown to be proportional tomore » $$({\\rm d}p/{\\rm d}\\rho)/B_t^2$$ around q = 1. Below the threshold, applied 3D fields can drive a helical core to finite size, as in DIII-D. The helical core size thereby depends on the magnitude of the applied perturbation. Above it, a small, random 3D kick causes a bifurcation from axisymmetry and excites a spontaneous helical core, which is independent of the kick size. Systematic scans of the q-profile show that the onset threshold is very sensitive to the q-shear in the core. Helical cores occur frequently in Alcator C-Mod during ramp-up when slow current penetration results in a reversed shear q-profile, which is favorable for helical core formation. In conclusion, a comparison of the helical core onset threshold for discharges from DIII-D, Alcator C-Mod and ITER confirms that while DIII-D is marginally stable, Alcator C-Mod and especially ITER are highly susceptible to helical core formation without being driven by an externally applied 3D magnetic field.« less

Dynamics of Single Flux Rope in the Reconnection Scaling Experiment

NASA Astrophysics Data System (ADS)

Feng, Y.; Sears, J.; Intrator, T.; Weber, T.; Swan, H.; Dunn, J. P.; Gao, K.; Chapdelaine, L.

2013-12-01

A magnetic flux tube threaded by current is a flux rope with helically twisted field lines. In the Reconnection Scaling Experiment (RSX) we use a plasma gun to generate a single flux rope with a choice of axial boundary conditions. If this flux rope is driven hard enough, i.e., when J●B /B2 is larger than the kink instability threshold, we measure a helically distorted kinked structure. Rather than exploding in an Alfvén time, this kink appears to saturate to a steady amplitude, helical, gyrating flux rope, which persists as long as the plasma gun sources the current. To understand it, we have experimentally measured three-dimensional (3D) profiles of various quantities of this flux rope. These quantities include magnetic field B, plasma density n and potential φ, ion flow velocity vi, so that current density J, electron flow velocity ve and electron pressure Pe can also be derived. Consequently we can analyze the single flux rope dynamics systematically in 3D. Besides gyrating (writhe), we also find the flux rope has a spin (twist) center, around which the J×B - ▽Pe ≠ 0 suggesting that there should be other forces for the radial balance. We also find that there is a reverse current moving around with the flux rope at some locations, i.e. there are local induced currents that are not at all apparent from measurements outside the 3D volume. Work supported by LANL-DOE, DOE Fusion Energy Sciences DE-AC52-06NA25396, NASA Geospace NNHIOA044I Basic, CMSO, SULI, NUF.

Simulation of multi-pulse coaxial helicity injection in the Sustained Spheromak Physics Experiment

NASA Astrophysics Data System (ADS)

O'Bryan, J. B.; Romero-Talamás, C. A.; Woodruff, S.

2018-03-01

Nonlinear, numerical computation with the NIMROD code is used to explore magnetic self-organization during multi-pulse coaxial helicity injection in the Sustained Spheromak Physics eXperiment. We describe multiple distinct phases of spheromak evolution, starting from vacuum magnetic fields and the formation of the initial magnetic flux bubble through multiple refluxing pulses and the eventual onset of the column mode instability. Experimental and computational magnetic diagnostics agree on the onset of the column mode instability, which first occurs during the second refluxing pulse of the simulated discharge. Our computations also reproduce the injector voltage traces, despite only specifying the injector current and not explicitly modeling the external capacitor bank circuit. The computations demonstrate that global magnetic evolution is fairly robust to different transport models and, therefore, that a single fluid-temperature model is sufficient for a broader, qualitative assessment of spheromak performance. Although discharges with similar traces of normalized injector current produce similar global spheromak evolution, details of the current distribution during the column mode instability impact the relative degree of poloidal flux amplification and magnetic helicity content.

First Demonstration of a Coronal Mass Ejection Driven by Helicity Condensation

NASA Astrophysics Data System (ADS)

Dahlin, J. T.; Antiochos, S. K.; DeVore, C. R.

2017-12-01

Understanding the mechanism for CMEs/eruptive flares is one of the most important problems in all space science. Two classes of theories have been proposed: ideal processes such as the torus instability, or magnetic reconnection as in the breakout model. Previous simulations of eruptions have used special assumptions, such as a particular initial condition ripe for instability and/or particular boundary conditions designed to induce eruption. We report on a simulation in which the initial state is the minimum-energy potential field, and the system is driven solely by the small-scale random motions observed for photospheric convection. The only requirement on the system is that the flows are sufficiently complex to induce pervasive and random reconnection throughout the volume, as expected for coronal heating, and a net helicity is injected into the corona, in agreement with the observed hemispheric helicity preference. We find that as a result of a turbulent-like cascade, the helicity "condenses" onto a polarity inversion line forming a filament channel, which eventually erupts explosively. We discuss the implications of this fully self-consistent eruption simulation for understanding CMEs/flares and for interpreting coronal observations. This work was supported by the NASA LWS and SR Programs.

Micro-Mechanical Analysis About Kink Band in Carbon Fiber/Epoxy Composites Under Longitudinal Compression

NASA Astrophysics Data System (ADS)

Zhang, Mi; Guan, Zhidong; Wang, Xiaodong; Du, Shanyi

2017-10-01

Kink band is a typical phenomenon for composites under longitudinal compression. In this paper, theoretical analysis and finite element simulation were conducted to analyze kink angle as well as compressive strength of composites. Kink angle was considered to be an important character throughout longitudinal compression process. Three factors including plastic matrix, initial fiber misalignment and rotation due to loading were considered for theoretical analysis. Besides, the relationship between kink angle and fiber volume fraction was improved and optimized by theoretical derivation. In addition, finite element models considering fiber stochastic strength and Drucker-Prager constitutive model for matrix were conducted in ABAQUS to analyze kink band formation process, which corresponded with the experimental results. Through simulation, the loading and failure procedure can be evidently divided into three stages: elastic stage, softening stage, and fiber break stage. It also shows that kink band is a result of fiber misalignment and plastic matrix. Different values of initial fiber misalignment angle, wavelength and fiber volume fraction were considered to explore the effects on compressive strength and kink angle. Results show that compressive strength increases with the decreasing of initial fiber misalignment angle, the decreasing of initial fiber misalignment wavelength and the increasing of fiber volume fraction, while kink angle decreases in these situations. Orthogonal array in statistics was also built to distinguish the effect degree of these factors. It indicates that initial fiber misalignment angle has the largest impact on compressive strength and kink angle.

Two-dimensional Nonlinear Simulations of Temperature-anisotropy Instabilities with a Proton-alpha Drift

NASA Astrophysics Data System (ADS)

Markovskii, S. A.; Chandran, Benjamin D. G.; Vasquez, Bernard J.

2018-04-01

We present two-dimensional hybrid simulations of proton-cyclotron and mirror instabilities in a proton-alpha plasma with particle-in-cell ions and a neutralizing electron fluid. The instabilities are driven by the protons with temperature perpendicular to the background magnetic field larger than the parallel temperature. The alpha particles with initially isotropic temperature have a nonzero drift speed with respect to the protons. The minor ions are known to influence the relative effect of the proton-cyclotron and mirror instabilities. In this paper, we show that the mirror mode can dominate the power spectrum at the nonlinear stage even if its linear growth rate is significantly lower than that of the proton-cyclotron mode. The proton-cyclotron instability combined with the alpha-proton drift is a possible cause of the nonzero magnetic helicity observed in the solar wind for fluctuations propagating nearly parallel to the magnetic field. Our simulations generally confirm this concept but reveal a complex helicity spectrum that is not anticipated from the linear theory of the instability.

Behavior of MHD Instabilities of the Large Helical Device near the Effective Plasma Boundary in the Magnetic Stochastic Region

NASA Astrophysics Data System (ADS)

Ohdachi, S.; Suzuki, Y.; Sakakibara, S.; Watanabe, K. Y.; Ida, K.; Goto, M.; Du, X. D.; Narushima, Y.; Takemura, Y.; Yamada, H.

In the high beta experiments of the Large Helical Device (LHD), the plasma tends to expand from the last closed flux surface (LCFS) determined by the vacuum magnetic field. The pressure/temperature gradient in the external region is finite. The scale length of the pressure profile does not change so much even when the mean free path of electrons exceeds the connection length of the magnetic field line to the wall. There appear MHD instabilities with amplitude of 10-4 of the toroidal magnetic field. From the mode number of the activities (m/n = 2/3, 1/2, 2/4), the location of the corresponding rational surface is outside the vacuum LCFS. The location of the mode is consistent with the fluctuation measurement, e.g., soft X-ray detector arrays. The MHD mode localized in the magnetic stochastic region is affected by the magnetic field structure estimated by the connection length to the wall using 3D equilibrium calculation.

Semirelativity and Kink Solitons

ERIC Educational Resources Information Center

Nowak, Mariusz Karol

2014-01-01

It is hard to observe relativistic effects in everyday life. However, table experiments using a mechanical transmission line for solitons may be an efficient and simple way to show effects such as Lorentz contraction in a classroom. A kink soliton is a deformation of a lattice of several dozen or more pendulums placed on a wire and connected by a…

Standing Kink modes in three-dimensional coronal loops

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pascoe, D. J.; De Moortel, I., E-mail: dpascoe@mcs.st-andrews.ac.uk

2014-04-01

So far, the straight flux tube model proposed by Edwin and Roberts is the most commonly used tool in practical coronal seismology, in particular, to infer values of the (coronal) magnetic field from observed, standing kink mode oscillations. In this paper, we compare the period predicted by this basic model with three-dimensional (3D) numerical simulations of standing kink mode oscillations, as the period is a crucial parameter in the seismological inversion to determine the magnetic field. We perform numerical simulations of standing kink modes in both straight and curved 3D coronal loops and consider excitation by internal and external drivers.more » The period of oscillation for the displacement of dense coronal loops is determined by the loop length and the kink speed, in agreement with the estimate based on analytical theory for straight flux tubes. For curved coronal loops embedded in a magnetic arcade and excited by an external driver, a secondary mode with a period determined by the loop length and external Alfvén speed is also present. When a low number of oscillations is considered, these two periods can result in a single, non-resolved (broad) peak in the power spectrum, particularly for low values of the density contrast for which the two periods will be relatively similar. In that case (and for this particular geometry), the presence of this additional mode would lead to ambiguous seismological estimates of the magnetic field strength.« less

Interaction of external n = 1 magnetic fields with the sawtooth instability in low- q RFX-mod and DIII-D tokamaks

DOE PAGES

Piron, C.; Martin, P.; Bonfiglio, D.; ...

2016-08-11

External n = 1 magnetic fields are applied in RFX-mod and DIII-D low safety factor Tokamak plasmas to investigate their interaction with the internal MHD dynamics and in particular with the sawtooth instability. In these experiments the applied magnetic fields cause a reduction of both the sawtooth amplitude and period, leading to an overall stabilizing effect on the oscillations. In RFX-mod sawteeth eventually disappear and are replaced by a stationary m = 1, n = 1 helical equilibrium without an increase in disruptivity. However toroidal rotation is significantly reduced in these plasmas, thus it is likely that the sawtooth mitigationmore » in these experiments is due to the combination of the helically deformed core and the reduced rotation. The former effect is qualitatively well reproduced by nonlinear MHD simulations performed with the PIXIE3D code. The results obtained in these RFX-mod experiments motivated similar ones in DIII-D L-mode diverted Tokamak plasmas at low q 95. These experiments succeeded in reproducing the sawtooth mitigation with the approach developed in RFX-mod. In DIII-D this effect is correlated with a clear increase of the n = 1 plasma response, that indicates an enhancement of the coupling to the marginally stable n = 1 external kink, as simulations with the linear MHD code IPEC suggest. A significant rotation braking in the plasma core is also observed in DIII-D. Finally, numerical calculations of the neoclassical toroidal viscosity (NTV) carried out with PENT identify this torque as a possible contributor for this effect.« less

A worldwide photographic network for wide-field observations of Halley's Comet in 1985-1986

NASA Technical Reports Server (NTRS)

Niedner, M. B., Jr.; Brandt, J. C.; Rahe, J.

1982-01-01

A global network of ground-based observatories for the study of Halley's Comet in 1985/1986 is discussed. Recommendations are made with respect to improving coordination between reporting observatories, in order to ensure detailed imaging of such fast-generating cometary phenomena as plasma-tail knots, helices, disconnected tails, rays and condensations. A method for calibrating telescopes is considered by which well-studied objects will be photographed to provide references for images of Halley's Comet. This procedure is expected to reduce errors to approximately 0.05 mag. A coordinated study of Halley's Comet will provide important data on the physical properties of the Comet. Examples of the topics of study related to the plasma physics of the Comet's tail include: magnetic reconnection, rippling and tearing modes, kink instability, Kelvin-Helmholtz instability, and the flute instability.

Development of kink bands in granodiorite: Effect of mechanical heterogeneities, fault geometry, and friction

NASA Astrophysics Data System (ADS)

Chheda, T. D.; Nevitt, J. M.; Pollard, D. D.

2014-12-01

The formation of monoclinal right-lateral kink bands in Lake Edison granodiorite (central Sierra Nevada, CA) is investigated through field observations and mechanics based numerical modeling. Vertical faults act as weak surfaces within the granodiorite, and vertical granodiorite slabs bounded by closely-spaced faults curve into a kink. Leucocratic dikes are observed in association with kinking. Measurements were made on maps of Hilgard, Waterfall, Trail Fork, Kip Camp (Pollard and Segall, 1983b) and Bear Creek kink bands (Martel, 1998). Outcrop scale geometric parameters such as fault length andspacing, kink angle, and dike width are used to construct a representative geometry to be used in a finite element model. Three orders of fault were classified, length = 1.8, 7.2 and 28.8 m, and spacing = 0.3, 1.2 and 3.6 m, respectively. The model faults are oriented at 25° to the direction of shortening (horizontal most compressive stress), consistent with measurements of wing crack orientations in the field area. The model also includes a vertical leucocratic dike, oriented perpendicular to the faults and with material properties consistent with aplite. Curvature of the deformed faults across the kink band was used to compare the effects of material properties, strain, and fault and dike geometry. Model results indicate that the presence of the dike, which provides a mechanical heterogeneity, is critical to kinking in these rocks. Keeping properties of the model granodiorite constant, curvature increased with decrease in yield strength and Young's modulus of the dike. Curvature increased significantly as yield strength decreased from 95 to 90 MPa, and below this threshold value, limb rotation for the kink band was restricted to the dike. Changing Poisson's ratio had no significant effect. The addition of small faults between bounding faults, decreasing fault spacing or increasing dike width increases the curvature. Increasing friction along the faults decreases slip, so

Resonant interaction of ϕ4 kink with PT-symmetric perturbation with spatially periodic gain/loss coefficient

NASA Astrophysics Data System (ADS)

Saadatmand, Danial; Borisov, Denis I.; Kevrekidis, Panayotis G.; Zhou, Kun; Dmitriev, Sergey V.

2018-03-01

The resonant interaction of the ϕ4 kink with a PT-symmetric perturbation is observed in the numerical study performed in the frame of the continuum model and with the help of a two degree of freedom collective variable model derived in PRA 89, 010102(R). The perturbation is in the form of first partial derivative in time term with a spatially periodic gain/loss coefficient. When the kink interacts with the perturbation, the kink's internal mode is excited with the amplitude varying in time quasiperiodically. The maximal value of the amplitude was found to grow when the kink velocity is such that it travels one period of the gain/loss prefactor in nearly one period of the kink's internal mode. It is also found that the kink's translational and vibrational modes are coupled in a way that an increase in the kink's internal mode amplitude results in a decrease in kink velocity. The results obtained with the collective variable method are in a good qualitative agreement with the numerical simulations for the continuum model. The results of the present study suggest that kink dynamics in open systems with balanced gain and loss can have new features in comparison with the case of conservative systems.

Morphology and Growth Kinetics of Straight and Kinked Tin Whiskers

NASA Astrophysics Data System (ADS)

Susan, Donald; Michael, Joseph; Grant, Richard P.; McKenzie, Bonnie; Yelton, W. Graham

2013-03-01

Time-lapse SEM studies of Sn whiskers were conducted to estimate growth kinetics and document whisker morphologies. For straight whiskers, growth rates of 3 to 4 microns per day were measured at room temperature. Two types of kinked whiskers were observed. For Type A kinks, the original growth segment spatial orientation remains unchanged, there are no other changes in morphology or diameter, and growth continues. For Type B kinks, the spatial orientation of the original segment changes and it appears that the whisker bends over. Whiskers with Type B kinks show changes in morphology and diameter at the base, indicating grain boundary motion in the film, which eliminates the conditions suitable for long-term whisker growth. To estimate the errors in the whisker growth measurements, a technique is presented to correct for SEM projection effects. With this technique, the actual growth angles and lengths of a large number of whiskers were collected. It was found that most whiskers grow at moderate or shallow angles with respect to the surface; few straight whiskers grow nearly normal to the surface. In addition, there is no simple correlation between growth angles and lengths for whiskers observed over an approximate 2-year period.

Using Ab-Initio Calculations to Appraise Stm-Based - and Kink-Formation Energies

NASA Astrophysics Data System (ADS)

Feibelman, Peter J.

2001-03-01

Ab-initio total energies can and should be used to test the typically model-dependent results of interpreting STM morphologies. The benefits of such tests are illustrated here by ab-initio energies of step- and kink-formation on Pb and Pt(111) which show that the STM-based values of the kink energies must be revised. On Pt(111), the computed kink-energies for (100)- and (111)-microfacet steps are about 0.25 and 0.18 eV. These results imply a specific ratio of formation energies for the two step types, namely 1.14, in excellent agreement with experiment. If kink-formation actually cost the same energy on the two step types, an inference drawn from scanning probe observations of step wandering,(M. Giesen et al., Surf. Sci. 366, 229(1996).) this ratio ought to be 1. In the case of Pb(111), though computed energies to form (100)- and (111)-microfacet steps agree with measurement, the ab-initio kink-formation energies for the two step types, 41 and 60 meV, are 40-50% below experimental values drawn from STM images.(K. Arenhold et al., Surf. Sci. 424, 271(1999).) The discrepancy results from interpreting the images with a step-stiffness vs. kink-energy relation appropriate to (100) but not (111) surfaces. Good agreement is found when proper account of the trigonal symmetry of Pb(111) is taken in reinterpreting the step-stiffness data.

FORWARD MODELING OF STANDING KINK MODES IN CORONAL LOOPS. I. SYNTHETIC VIEWS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yuan, Ding; Doorsselaere, Tom Van, E-mail: DYuan2@uclan.ac.uk

2016-04-15

Kink magnetohydrodynamic (MHD) waves are frequently observed in various magnetic structures of the solar atmosphere. They may contribute significantly to coronal heating and could be used as a tool to diagnose the solar plasma. In this study, we synthesize the Fe ix λ171.073 Å emission of a coronal loop supporting a standing kink MHD mode. The kink MHD wave solution of a plasma cylinder is mapped into a semi-torus structure to simulate a curved coronal loop. We decompose the solution into a quasi-rigid kink motion and a quadrupole term, which dominate the plasma inside and outside of the flux tube, respectively.more » At the loop edges, the line of sight integrates relatively more ambient plasma, and the background emission becomes significant. The plasma motion associated with the quadrupole term causes spectral line broadening and emission suppression. The periodic intensity suppression will modulate the integrated intensity and the effective loop width, which both exhibit oscillatory variations at half of the kink period. The quadrupole term can be directly observed as a pendular motion at the front view.« less

Proline kink angle distributions for GWALP23 in lipid bilayers of different thicknesses.

PubMed

Rankenberg, Johanna M; Vostrikov, Vitaly V; DuVall, Christopher D; Greathouse, Denise V; Koeppe, Roger E; Grant, Christopher V; Opella, Stanley J

2012-05-01

By using selected (2)H and (15)N labels, we have examined the influence of a central proline residue on the properties of a defined peptide that spans lipid bilayer membranes by solid-state nuclear magnetic resonance (NMR) spectroscopy. For this purpose, GWALP23 (acetyl-GGALW(5)LALALALALALALW(19)LAGA-ethanolamide) is a suitable model peptide that employs, for the purpose of interfacial anchoring, only one tryptophan residue on either end of a central α-helical core sequence. Because of its systematic behavior in lipid bilayer membranes of differing thicknesses [Vostrikov, V. V., et al. (2010) J. Biol. Chem. 285, 31723-31730], we utilize GWALP23 as a well-characterized framework for introducing guest residues within a transmembrane sequence; for example, a central proline yields acetyl-GGALW(5)LALALAP(12)ALALALW(19)LAGA-ethanolamide. We synthesized GWALP23-P12 with specifically placed (2)H and (15)N labels for solid-state NMR spectroscopy and examined the peptide orientation and segmental tilt in oriented DMPC lipid bilayer membranes using combined (2)H GALA and (15)N-(1)H high-resolution separated local field methods. In DMPC bilayer membranes, the peptide segments N-terminal and C-terminal to the proline are both tilted substantially with respect to the bilayer normal, by ~34 ± 5° and 29 ± 5°, respectively. While the tilt increases for both segments when proline is present, the range and extent of the individual segment motions are comparable to or smaller than those of the entire GWALP23 peptide in bilayer membranes. In DMPC, the proline induces a kink of ~30 ± 5°, with an apparent helix unwinding or "swivel" angle of ~70°. In DLPC and DOPC, on the basis of (2)H NMR data only, the kink angle and swivel angle probability distributions overlap those of DMPC, yet the most probable kink angle appears to be somewhat smaller than in DMPC. As has been described for GWALP23 itself, the C-terminal helix ends before Ala(21) in the phospholipids DMPC and DLPC yet

Kinks and antikinks of buckled graphene: A testing ground for the φ4 field model

NASA Astrophysics Data System (ADS)

Yamaletdinov, R. D.; Slipko, V. A.; Pershin, Y. V.

2017-09-01

Kinks and antikinks of the classical φ4 field model are topological solutions connecting its two distinct ground states. Here we establish an analogy between the excitations of a long graphene nanoribbon buckled in the transverse direction and φ4 model results. Using molecular dynamics simulations, we investigated the dynamics of a buckled graphene nanoribbon with a single kink and with a kink-antikink pair. Several features of the φ4 model have been observed including the kink-antikink capture at low energies, kink-antikink reflection at high energies, and a bounce resonance. Our results pave the way towards the experimental observation of a rich variety of φ4 model predictions based on graphene.

Improvement of kink characteristic of proton-implanted VCSEL with ITO overcoating

NASA Astrophysics Data System (ADS)

Lai, Fang-I.; Chang, Ya-Hsien; Laih, Li-Hong; Kuo, Hao-chung; Wang, S. C.

2004-06-01

Proton implanted VCSEL has been demonstrated with good reliability and decent modulation speed up to 1.25 Gb/s. However, kinks in current vs light output (L-I) has been always an issue in the gain-guided proton implant VCSEL. The kink related jitter and noise performance made it difficult to meet 2.5 Gb/s (OC-48) requirement. The kinks in L-I curve can be attributed to non-uniform carrier distribution induced non-uniform gain distribution within emission area. In this paper, the effects of a Ti/ITO transparent over-coating on the proton-implanted AlGaAs/GaAs VCSELs (15um diameter aperture) are investigated. The kinks distribution in L-I characteristics from a 2 inch wafer is greatly improved compared to conventional process. These VCSELs exhibit nearly kink-free L-I output performance with threshold currents ~3 mA, and the slope efficiencies ~ 0.25 W/A. The near-field emission patterns suggest the Ti/ITO over-coating facilitates the current spreading and uniform carrier distribution of the top VCSEL contact thus enhancing the laser performance. Finally, we performed high speed modulation measurement. The eye diagram of proton-implanted VCSELs with Ti/ITO transparent over-coating operating at 2.125 Gb/s with 10mA bias and 9dB extinction ratio shows very clean eye with jitter less than 35 ps.

Grooves and Kinks in the Rings

NASA Image and Video Library

2017-06-19

Many of the features seen in Saturn's rings are shaped by the planet's moons. This view from NASA's Cassini spacecraft shows two different effects of moons that cause waves in the A ring and kinks in a faint ringlet. The view captures the outer edge of the 200-mile-wide (320-kilometer-wide) Encke Gap, in the outer portion of Saturn's A ring. This is the same region features the large propeller called Earhart. Also visible here is one of several kinked and clumpy ringlets found within the gap. Kinks and clumps in the Encke ringlet move about, and even appear and disappear, in part due to the gravitational effects of Pan -- which orbits in the gap and whose gravitational influence holds it open. The A ring, which takes up most of the image on the left side, displays wave features caused by Pan, as well as the moons Pandora and Prometheus, which orbit a bit farther from Saturn on both sides of the planet's F ring. This view was taken in visible light with the Cassini spacecraft narrow-angle camera on March 22, 2017, and looks toward the sunlit side of the rings from about 22 degrees above the ring plane. The view was acquired at a distance of approximately 63,000 miles (101,000 kilometers) from Saturn and at a phase angle (the angle between the sun, the rings and the spacecraft) of 59 degrees. Image scale is 1,979 feet (603 meters) per pixel. https://photojournal.jpl.nasa.gov/catalog/PIA21333

Predator-prey modeling of the coupling of co-propagating CAE to kink modes

NASA Astrophysics Data System (ADS)

Fredrickson, Eric

2012-10-01

Co-propagating Compressional Alfven eigenmodes (CAE) with shorter wavelength and higher frequency than the counter-propagating CAE and Global Alfven eigenmodes (GAE) often accompany a low frequency n=1 kink. The lower frequency CAE and GAE are excited through a Doppler-shifted cyclotron resonance; the high frequency CAE (hfCAE) through a simple parallel resonance. We present measurements of the mode structure and spectrum of the hfCAE, and compare those measurements to predictions of a simple model for CAE. The modes are bursting with a typical burst frequency on the order of a few kHz. The n=1 kink frequency is usually higher than this, but when the kink frequency does drop towards the hfCAE burst frequency, the hfCAE burst frequency can become locked with the kink frequency. A simple predator-prey model to simulate the hfCAE bursting demonstrates that a modulation of the growth or damping rate by a few percent, at a frequency near the natural burst frequency, can lock the burst frequency to the modulation frequency. The modulation of the damping rate is postulated to be through a coupling of the kink with a symmetry-breaking error field. The deeper question is how the kink interaction with a locked mode can affect the damping/growth rates of the CAE.

[A fluoride-sensor for kink structure in DNA condensation process].

PubMed

Liu, Yan-Hui; Zhang, Jing; Chen, Ying-Bing; Li, Yu-Pu; Hu, Lin

2014-01-01

Bloomfield has pointed out that the kink structure occurs for sharp bending during DNA condensation process, until now, which has not been proved by experiments. Using UV Spectrophotometer, the effects of fluoride and chlorine on the polyamine-DNA condensation system can be detected. Fluoride and chlorine both belong to the halogen family, but their effects on spermine-DNA condensation system are totally different. Fluoride ions make blue-shift and hyperchromicity appear in the spermine-DNA condensation system, but chlorine ions only make insignificant hyperchromicity happen in this system. Both fluoride ions and chlorine ions only make insignificant hyperchromicity happen in spermidine-DNA condensation system. Based on the distinguished character of fluoride, a fluoride-sensor for "kink" structure in DNA condensation was developed and the second kind of "kink" structure only appear in the spermine-DNA condensation system.

Improved calculation of the gravitational wave spectrum from kinks on infinite cosmic strings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsui, Yuka; Horiguchi, Koichiro; Nitta, Daisuke

2016-11-01

Gravitational wave observations provide unique opportunities to search for cosmic strings. One of the strongest sources of gravitational waves is discontinuities of cosmic strings, called kinks, which are generated at points of intersection. Kinks on infinite strings are known to generate a gravitational wave background over a wide range of frequencies. In this paper, we calculate the spectrum of the gravitational wave background by numerically solving the evolution equation for the distribution function of the kink sharpness. We find that the number of kinks for small sharpness is larger than the analytical estimate used in a previous work, which makesmore » a difference in the spectral shape. Our numerical approach enables us to make a more precise prediction on the spectral amplitude for future gravitational wave experiments.« less

Modulation of thermal conductivity in kinked silicon nanowires: phonon interchanging and pinching effects.

PubMed

Jiang, Jin-Wu; Yang, Nuo; Wang, Bing-Shen; Rabczuk, Timon

2013-04-10

We perform molecular dynamics simulations to investigate the reduction of the thermal conductivity by kinks in silicon nanowires. The reduction percentage can be as high as 70% at room temperature. The temperature dependence of the reduction is also calculated. By calculating phonon polarization vectors, two mechanisms are found to be responsible for the reduced thermal conductivity: (1) the interchanging effect between the longitudinal and transverse phonon modes and (2) the pinching effect, that is, a new type of localization, for the twisting and transverse phonon modes in the kinked silicon nanowires. Our work demonstrates that the phonon interchanging and pinching effects, induced by kinking, are brand-new and effective ways in modulating heat transfer in nanowires, which enables the kinked silicon nanowires to be a promising candidate for thermoelectric materials.

Kinks in the σ band of graphene induced by electron-phonon coupling.

PubMed

Mazzola, Federico; Wells, Justin W; Yakimova, Rositza; Ulstrup, Søren; Miwa, Jill A; Balog, Richard; Bianchi, Marco; Leandersson, Mats; Adell, Johan; Hofmann, Philip; Balasubramanian, T

2013-11-22

Angle-resolved photoemission spectroscopy reveals pronounced kinks in the dispersion of the σ band of graphene. Such kinks are usually caused by the combination of a strong electron-boson interaction and the cutoff in the Fermi-Dirac distribution. They are therefore not expected for the σ band of graphene that has a binding energy of more than ≈3.5 eV. We argue that the observed kinks are indeed caused by the electron-phonon interaction, but the role of the Fermi-Dirac distribution cutoff is assumed by a cutoff in the density of σ states. The existence of the effect suggests a very weak coupling of holes in the σ band not only to the π electrons of graphene but also to the substrate electronic states. This is confirmed by the presence of such kinks for graphene on several different substrates that all show a strong coupling constant of λ≈1.

The importance of being kinked: role of Pro residues in the selectivity of the helical antimicrobial peptide P5.

PubMed

Bobone, Sara; Bocchinfuso, Gianfranco; Park, Yoonkyung; Palleschi, Antonio; Hahm, Kyung-Soo; Stella, Lorenzo

2013-12-01

Antimicrobial peptides (AMPs) are promising compounds for developing new antibiotic drugs against drug-resistant bacteria. Many of them kill bacteria by perturbing their membranes but exhibit no significant toxicity towards eukaryotic cells. The identification of the features responsible for this selectivity is essential for their pharmacological development. AMPs exhibit few conserved features, but a statistical analysis of an AMP sequence database indicated that many α-helical AMPs surprisingly have a helix-breaking Pro residue in the middle of their sequence. To discriminate among the different possible hypotheses for the functional role of this feature, we designed an analogue of the antimicrobial peptide P5, in which the central Pro was deleted (analogue P5Del). Pro removal resulted in a dramatic increase of toxicity. This was explained by the observation that P5Del binds both charged and neutral membranes, whereas P5 has no appreciable affinity towards neutral bilayers. CD and simulative data provided a rationalization of this behavior. In solution P5, due to the presence of Pro, attains compact conformations, in which its apolar residues are partially shielded from the solvent, whereas P5Del is more helical. These structural differences reduce the hydrophobic driving force for association of P5 to neutral membranes, whereas its binding to anionic bilayers can still take place because of electrostatic attraction. After membrane binding, the Pro residue does not preclude the attainment of a membrane-active amphiphilic helical conformation. These findings shed light on the role of Pro residues in the selectivity of AMPs and provide hints for the design of new, highly selective compounds. Copyright © 2013 European Peptide Society and John Wiley & Sons, Ltd.

ABC of kink kinetics and density in a complex solution

DOE PAGES

Chernov, A. A.; DeYoreo, J. J.; Rashkovich, L. N.

2007-06-14

This tutorial lecture explains the ways supersaturation in complex solutions may be introduced to be most relevant to describe experimental data on kink and step kinetics. To do so, we express the kink rate via the frequencies of attachment and detachment of the building units and then link these frequencies to the measurable activities of these units in solution. Furthermore, possible reasons for violation of the Gibbs–Thomson law are also briefly discussed with reference to our earlier work.

π-kink propagation in the damped Frenkel-Kontorova model

NASA Astrophysics Data System (ADS)

Alfaro-Bittner, K.; Clerc, M. G.; García-Ñustes, M. A.; Rojas, R. G.

2017-08-01

Coupled dissipative nonlinear oscillators exhibit complex spatiotemporal dynamics. Frenkel-Kontorova is a prototype model of coupled nonlinear oscillators, which exhibits coexistence between stable and unstable state. This model accounts for several physical systems such as the movement of atoms in condensed matter and magnetic chains, dynamics of coupled pendulums, and phase dynamics between superconductors. Here, we investigate kinks propagation into an unstable state in the Frenkel-Kontorova model with dissipation. We show that unlike point-like particles π-kinks spread in a pulsating manner. Using numerical simulations, we have characterized the shape of the π-kink oscillation. Different parts of the front propagate with the same mean speed, oscillating with the same frequency but different amplitude. The asymptotic behavior of this propagation allows us to determine the minimum mean speed of fronts analytically as a function of the coupling constant. A generalization of the Peierls-Nabarro potential is introduced to obtain an effective continuous description of the system. Numerical simulations show quite fair agreement between the Frenkel-Kontorova model and the proposed continuous description.

On the inverse transfer of (non-)helical magnetic energy in a decaying magnetohydrodynamic turbulence

NASA Astrophysics Data System (ADS)

Park, Kiwan

2017-12-01

In our conventional understanding, large-scale magnetic fields are thought to originate from an inverse cascade in the presence of magnetic helicity, differential rotation or a magneto-rotational instability. However, as recent simulations have given strong indications that an inverse cascade (transfer) may occur even in the absence of magnetic helicity, the physical origin of this inverse cascade is still not fully understood. We here present two simulations of freely decaying helical and non-helical magnetohydrodynamic (MHD) turbulence. We verified the inverse transfer of helical and non-helical magnetic fields in both cases, but we found the underlying physical principles to be fundamentally different. In the former case, the helical magnetic component leads to an inverse cascade of magnetic energy. We derived a semi-analytic formula for the evolution of large-scale magnetic field using α coefficient and compared it with the simulation data. But in the latter case, the α effect, including other conventional dynamo theories, is not suitable to describe the inverse transfer of non-helical magnetic energy. To obtain a better understanding of the physics at work here, we introduced a 'field structure model' based on the magnetic induction equation in the presence of inhomogeneities. This model illustrates how the curl of the electromotive force leads to the build up of a large-scale magnetic field without the requirement of magnetic helicity. And we applied a quasi-normal approximation to the inverse transfer of magnetic energy.

Differential diagnosis of ventriculomegaly and brainstem kinking on fetal MRI.

PubMed

Amir, Tali; Poretti, Andrea; Boltshauser, Eugen; Huisman, Thierry A G M

2016-01-01

Fetal ventriculomegaly is a common and frequently leading neuroimaging finding in complex brain malformations. Here we report on pre- and postnatal neuroimaging findings in three fetuses with prenatal ventriculomegaly and brainstem kinking. We aim to identify key neuroimaging features that may allow the prenatal differentiation between diseases associated with fetal ventriculomegaly and brainstem kinking. All pre- and postnatal magnetic resonance imaging (MRI) data were qualitatively evaluated for infra- and supratentorial abnormalities. Data about clinical features and genetic findings were collected from clinical histories. In all three patients, fetal MRI showed ventriculomegaly and brainstem kinking. In two patients, postnatal MRI also showed supratentorial migration abnormalities and eye abnormalities were found. In these children, the diagnosis of α-dystroglycanopathy was genetically confirmed. In the third patient, basal ganglia had an abnormal shape on MRI suggesting a tubulinopathy. The differential diagnosis of prenatal ventriculomegaly and brainstem kinking includes α-dystroglycanopathies, X-linked hydrocephalus due to mutations in L1CAM, and tubulinopathies. The prenatal differentiation between these diseases may be difficult. The presence of ocular abnormalities on prenatal neuroimaging may favor α-dystroglycanopathies, while dysplastic basal ganglia may suggest a tubulinopathy. However, in some patients the final differentiation between these diseases is possible only postnatally. Copyright © 2015 The Japanese Society of Child Neurology. Published by Elsevier B.V. All rights reserved.

Hall effect on magnetohydrodynamic instabilities at an elliptic magnetic stagnation line

NASA Astrophysics Data System (ADS)

Spies, Günther O.; Faghihi, Mustafa

1987-06-01

To answer the question whether the Hall effect removes the unphysical feature of ideal magnetohydrodynamics of predicting small wavelength kink instabilities at any elliptic magnetic stagnation line, a normal mode analysis is performed of the motion of an incompressible Hall fluid about cylindrical Z-pinch equilibria with circular cross sections. The eigenvalue loci in the complex frequency plane are derived for the equilibrium with constant current density. Every particular mode becomes stable as the Hall parameter exceeds a critical value. This value, however, depends on the mode such that it increases to infinity as the ideal growth rate decreases to zero, implying that there always remains an infinite number of slowly growing instabilities. Correspondingly, the stability criterion for equilibria with arbitrary current distributions is independent of the Hall parameter.

Investigation on de-trapping mechanisms related to non-monotonic kink pattern in GaN HEMT devices

NASA Astrophysics Data System (ADS)

Sharma, Chandan; Laishram, Robert; Amit, Rawal, Dipendra Singh; Vinayak, Seema; Singh, Rajendra

2017-08-01

This article reports an experimental approach to analyze the kink effect phenomenon which is usually observed during the GaN high electron mobility transistor (HEMT) operation. De-trapping of charge carriers is one of the prominent reasons behind the kink effect. The commonly observed non-monotonic behavior of kink pattern is analyzed under two different device operating conditions and it is found that two different de-trapping mechanisms are responsible for a particular kink behavior. These different de-trapping mechanisms are investigated through a time delay analysis which shows the presence of traps with different time constants. Further voltage sweep and temperature analysis corroborates the finding that different de-trapping mechanisms play a role in kink behavior under different device operating conditions.

Dynamics of an n = 1 explosive instability and its role in high-β disruptions

NASA Astrophysics Data System (ADS)

Aydemir, A. Y.; Park, B. H.; In, Y. K.

2018-01-01

Some low-n kink-ballooning modes not far from marginal stability are shown to exhibit a bifurcation between two very distinct nonlinear paths that depends sensitively on the background transport levels and linear perturbation amplitudes. The particular instability studied in this work is an n=1 mode dominated by an m/n=2/1 component. It is driven by a large pressure gradient in weak magnetic shear and can appear in various high- \

Decay-less kink oscillations in coronal loops

NASA Astrophysics Data System (ADS)

Anfinogentov, S.; Nisticò, G.; Nakariakov, V. M.

2013-12-01

Context. Kink oscillations of coronal loops in an off-limb active region are detected with the Imaging Assembly Array (AIA) instruments of the Solar Dynamics Observatory (SDO) at 171 Å. Aims: We aim to measure periods and amplitudes of kink oscillations of different loops and to determinate the evolution of the oscillation phase along the oscillating loop. Methods: Oscillating coronal loops were visually identified in the field of view of SDO/AIA and STEREO/EUVI-A: the loop length was derived by three-dimensional analysis. Several slits were taken along the loops to assemble time-distance maps. We identified oscillatory patterns and retrieved periods and amplitudes of the oscillations. We applied the cross-correlation technique to estimate the phase shift between oscillations at different segments of oscillating loops. Results: We found that all analysed loops show low-amplitude undamped transverse oscillations. Oscillation periods of loops in the same active region range from 2.5 to 11 min, and are different for different loops. The displacement amplitude is lower than 1 Mm. The oscillation phase is constant along each analysed loop. The spatial structure of the phase of the oscillations corresponds to the fundamental standing kink mode. We conclude that the observed behaviour is consistent with the empirical model in terms of a damped harmonic resonator affected by a non-resonant continuously operating external force. A movie is available in electronic form at http://www.aanda.org

Magnetic resonance imaging of the kinked fetal brain stem: a sign of severe dysgenesis.

PubMed

Stroustrup Smith, Annemarie; Levine, Deborah; Barnes, Patrick D; Robertson, Richard L

2005-12-01

Magnetic resonance imaging (MRI) allows visualization of the fetal brain stem in a manner not previously possible. A "kinked" brain stem is a sign of severe neurodysgenesis. The purpose of this series was to describe cases of a kinked brain stem detected on prenatal MRI and to discuss the possible genetic and syndromic etiologies. Seven cases of a kinked brain stem on fetal MRI (gestational age range, 18-34 weeks) were reviewed and correlated with other clinical, genetic, imaging, and autopsy findings. In all cases, there was associated cerebellar hypogenesis. Additional findings were ventriculomegaly (4 cases), cerebral hypogenesis (3 cases), microcephaly (4 cases), schizencephaly (1 case), cephalocele (1 case), hypogenesis of the corpus callosum (1 case), and hydrocephalus (1 case). In 2 cases, prenatal sonography misidentified the kinked brain stem as the cerebellum. A kinked brain stem is an indicator of severe neurodysgenesis arising early in gestation. Magnetic resonance imaging provides the necessary resolution to detect this sign and delineate any associated anomalies in utero to assist with further genetic evaluation, management, and counseling.

On the influence of the local maxima of total pressure on the current sheet stability to the kink-like (flapping) mode

NASA Astrophysics Data System (ADS)

Korovinskiy, D. B.; Erkaev, N. V.; Semenov, V. S.; Ivanov, I. B.; Kiehas, S. A.; Ryzhkov, I. I.

2018-02-01

The stability of the Fadeev-like current sheet with respect to transversally propagating kink-like perturbations (flapping mode) is considered in terms of two-dimensional linear magnetohydrodynamic numerical simulations. It is found that the current sheet is stable when the total pressure minimum is located in the sheet center and unstable when the maximum value is reached there. It is shown that an unstable spot of any size enforces the whole sheet to be unstable, though the increment of instability decreases with the reduction of the unstable domain. In unstable sheets, the dispersion curve of instability shows a good match with the double-gradient (DG) model prediction. Here, the typical growth rate (short-wavelength limit) is close to the DG estimate averaged over the unstable region. In stable configurations, the typical frequency matches the maximum DG estimate. The dispersion curve of oscillations demonstrates a local maximum at wavelength ˜0.7 sheet half-width, which is a new feature that is absent in simplified analytical solutions.

The kink-soliton and antikink-soliton in quasi-one-dimensional nonlinear monoatomic lattice

NASA Astrophysics Data System (ADS)

Xu, Quan; Tian, Qiang

2005-04-01

The quasi-one-dimensional nonlinear monoatomic lattice is analyzed. The kink-soliton and antikink-soliton are presented. When the interaction of the lattice is strong in the x-direction and weak in the y-direction, the two-dimensional (2D) lattice changes to a quasi-one-dimensional lattice. Taking nearest-neighbor interaction into account, the vibration equation can be transformed into the KPI, KPII and MKP equation. Considering the cubic nonlinear potential of the vibration in the lattice, the kink-soliton solution is presented. Considering the quartic nonlinear potential and the cubic interaction potential, the kink-soliton and antikink-soliton solutions are presented.

A statistical study of decaying kink oscillations detected using SDO/AIA

NASA Astrophysics Data System (ADS)

Goddard, C. R.; Nisticò, G.; Nakariakov, V. M.; Zimovets, I. V.

2016-01-01

Context. Despite intensive studies of kink oscillations of coronal loops in the last decade, a large-scale statistically significant investigation of the oscillation parameters has not been made using data from the Solar Dynamics Observatory (SDO). Aims: We carry out a statistical study of kink oscillations using extreme ultraviolet imaging data from a previously compiled catalogue. Methods: We analysed 58 kink oscillation events observed by the Atmospheric Imaging Assembly (AIA) on board SDO during its first four years of operation (2010-2014). Parameters of the oscillations, including the initial apparent amplitude, period, length of the oscillating loop, and damping are studied for 120 individual loop oscillations. Results: Analysis of the initial loop displacement and oscillation amplitude leads to the conclusion that the initial loop displacement prescribes the initial amplitude of oscillation in general. The period is found to scale with the loop length, and a linear fit of the data cloud gives a kink speed of Ck = (1330 ± 50) km s-1. The main body of the data corresponds to kink speeds in the range Ck = (800-3300) km s-1. Measurements of 52 exponential damping times were made, and it was noted that at least 21 of the damping profiles may be better approximated by a combination of non-exponential and exponential profiles rather than a purely exponential damping envelope. There are nine additional cases where the profile appears to be purely non-exponential and no damping time was measured. A scaling of the exponential damping time with the period is found, following the previously established linear scaling between these two parameters.

Instability mechanisms and transition scenarios of spiral turbulence in Taylor-Couette flow.

PubMed

Meseguer, Alvaro; Mellibovsky, Fernando; Avila, Marc; Marques, Francisco

2009-10-01

Alternating laminar and turbulent helical bands appearing in shear flows between counterrotating cylinders are accurately computed and the near-wall instability phenomena responsible for their generation identified. The computations show that this intermittent regime can only exist within large domains and that its spiral coherence is not dictated by endwall boundary conditions. A supercritical transition route, consisting of a progressive helical alignment of localized turbulent spots, is carefully studied. Subcritical routes disconnected from secondary laminar flows have also been identified.

Irreversibility and the Point of No Return in the Evolution of Eruptive Active Regions

NASA Astrophysics Data System (ADS)

Georgoulis, Manolis K.

We combine multiple methods and findings to demonstrate that those eruptive solar active regions that form intense photospheric magnetic polarity inversion lines (PILs) enter a domain of irreversible evolution that will unavoidably force them to erupt at least once, giving rise to a major flare and an associated fast CME. Electric currents, Lorentz forces, free magnetic energy storage, and magnetic helicity, all play major roles in bringing the magnetic configuration on the verge of instability. The inferred irreversibility stems from the conservative properties of magnetic helicity in high magnetic Reynolds-number plasmas. In addition, the long-standing and fiercely debated classification of eruptive magnetic structures into sheared arcades and flux ropes is found to be of relatively little meaning: by means of the evolution above, the simplest possible sheared-arcade structure may gradually evolve into a flux rope susceptible to the helical-kink and the torus instabilities, among other destabilization mechanisms. Research partially supported by the EU Seventh Framework Programme under grant agreement No. PIRG07-GA-2010-268245 and by the European Union Social Fund (ESF) and Greek national funds through the Operational Program "Education and Lifelong Learning" of the National Strategic Reference Framework (NSRF) - Research Funding Program: Thales. Investing in knowledge society through the European Social Fund.

Automated detection of kinks from blood vessels for optic cup segmentation in retinal images

NASA Astrophysics Data System (ADS)

Wong, D. W. K.; Liu, J.; Lim, J. H.; Li, H.; Wong, T. Y.

2009-02-01

The accurate localization of the optic cup in retinal images is important to assess the cup to disc ratio (CDR) for glaucoma screening and management. Glaucoma is physiologically assessed by the increased excavation of the optic cup within the optic nerve head, also known as the optic disc. The CDR is thus an important indicator of risk and severity of glaucoma. In this paper, we propose a method of determining the cup boundary using non-stereographic retinal images by the automatic detection of a morphological feature within the optic disc known as kinks. Kinks are defined as the bendings of small vessels as they traverse from the disc to the cup, providing physiological validation for the cup boundary. To detect kinks, localized patches are first generated from a preliminary cup boundary obtained via level set. Features obtained using edge detection and wavelet transform are combined using a statistical approach rule to identify likely vessel edges. The kinks are then obtained automatically by analyzing the detected vessel edges for angular changes, and these kinks are subsequently used to obtain the cup boundary. A set of retinal images from the Singapore Eye Research Institute was obtained to assess the performance of the method, with each image being clinically graded for the CDR. From experiments, when kinks were used, the error on the CDR was reduced to less than 0.1 CDR units relative to the clinical CDR, which is within the intra-observer variability of 0.2 CDR units.

Apex Dips of Experimental Flux Ropes: Helix or Cusp?

NASA Astrophysics Data System (ADS)

Wongwaitayakornkul, Pakorn; Haw, Magnus A.; Li, Hui; Li, Shengtai; Bellan, Paul M.

2017-10-01

We present a new theory for the presence of apex dips in certain experimental flux ropes. Previously such dips were thought to be projections of a helical loop axis generated by the kink instability. However, new evidence from experiments and simulations suggest that the feature is a 2D cusp rather than a 3D helix. The proposed mechanism for cusp formation is a density pileup region generated by nonlinear interaction of neutral gas cones emitted from fast-gas nozzles. The results indicate that density perturbations can result in large distortions of an erupting flux rope, even in the absence of significant pressure or gravitational forces. The density pileup at the apex also suppresses the m = 1 kink mode by acting as a stationary node. Consequently, more accurate density profiles should be considered when attempting to model the stability and shape of solar and astrophysical flux ropes.

Ultrastructural instability of paired helical filaments from corticobasal degeneration as examined by scanning transmission electron microscopy.

PubMed Central

Ksiezak-Reding, H.; Tracz, E.; Yang, L. S.; Dickson, D. W.; Simon, M.; Wall, J. S.

1996-01-01

Paired helical filaments (PHFs) accumulate in the brains of subjects affected with Alzheimer's disease (AD) and certain other neurodegenerative disorders, including corticobasal degeneration (CBD). Electron microscope studies have shown that PHFs from CBD differ from those of AD by being wider and having a longer periodicity of the helical twist. Moreover, PHFs from CBD have been shown to be primarily composed of two rather than three highly phosphorylated polypeptides of tau (PHF-tau), with these polypeptides expressing no exons 3 and 10. To further explore the relationship between the heterogeneity of PHF-tau and the appearance of abnormal filaments, the ultrastructure and physical parameters such as mass per unit length and dimensions were compared in filaments from CBD and AD using high resolution scanning transmission electron microscopy (STEM). Filament-enriched fractions were isolated as Sarcosyl-insoluble pellets and for STEM studies, samples were freeze-dried without prior fixation or staining. Ultrastructurally, PHFs from CBD were shown to be a heterogeneous population as double- and single-stranded filaments could be identified based on their width and physical mass per unit length expressed in kilodaltons (kd) per nanometer (nm). Less abundant, double-stranded filaments had a maximal width of 29 nm and a mass per unit length of 133 kd/nm, whereas three times more abundant single-stranded filaments were 15 nm wide and bad a mass per unit length of 62 kd/nm. Double-stranded filaments also displayed a distinct axial region of less dense mass, which appeared to divide the PHFs into two protofilament-like strands. Furthermore, these filaments were frequently observed to physically separate along the long axis into two single strands or to break longitudinally. In contrast, PHFs from AD were ultrastructurally stable and uniform both in their width (22 nm) and physical mass per unit length (104 kd/nm). The ultrastructural features indicate that filaments of

A remarkable solvent effect on the nuclearity of neutral titanium(IV)-based helicate assemblies.

PubMed

Weekes, David Michael; Diebold, Carine; Mobian, Pierre; Huguenard, Clarisse; Allouche, Lionel; Henry, Marc

2014-04-22

The spontaneous self-assembly of a neutral circular trinuclear Ti(IV) -based helicate is described through the reaction of titanium(IV) isopropoxide with a rationally designed tetraphenolic ligand. The trimeric ring helicate was obtained after diffusion of n-pentane into a solution with dichloromethane. The circular helicate has been characterized by using single-crystal X-ray diffraction study, (13) C CP-MAS NMR and (1) H NMR DOSY solution spectroscopic, and positive electrospray ionization mass-spectrometric analysis. These analytical data were compared with those obtained from a previously reported double-stranded helicate that crystallizes in toluene. The trimeric ring was unstable in a pure solution with dichloromethane and transformed into the double-stranded helicate. Thermodynamic analysis by means of the PACHA software revealed that formation of the double-stranded helicates was characterized by ΔH(toluene)=-30 kJ mol(-1) and ΔS(toluene)=+357 J K(-1)  mol(-1) , whereas these values were ΔH(CH2 Cl2 )=-75 kJ mol(-1) and ΔS(CH2 Cl2 )=-37 J K(-1)  mol(-1) for the ring helicate. The transformation of the ring helicate into the double-stranded helicate was a strongly endothermic process characterized by ΔH(CH2 Cl2 )=+127 kJ mol(-1) and ΔH(n-pentane)=+644 kJ mol(-1) associated with a large positive entropy change ΔS=+1115 J K(-1) ⋅mol(-1) . Consequently, the instability of the ring helicate in pure dichloromethane was attributed to the rather high dielectric constant and dipole moment of dichloromethane relative to n-pentane. Suggestions for increasing the stability of the ring helicate are given. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Interaction of external n  =  1 magnetic fields with the sawtooth instability in low-q RFX-mod and DIII-D tokamaks

NASA Astrophysics Data System (ADS)

Piron, C.; Martin, P.; Bonfiglio, D.; Hanson, J.; Logan, N. C.; Paz-Soldan, C.; Piovesan, P.; Turco, F.; Bialek, J.; Franz, P.; Jackson, G.; Lanctot, M. J.; Navratil, G. A.; Okabayashi, M.; Strait, E.; Terranova, D.; Turnbull, A.

2016-10-01

External n  =  1 magnetic fields are applied in RFX-mod and DIII-D low safety factor Tokamak plasmas to investigate their interaction with the internal MHD dynamics and in particular with the sawtooth instability. In these experiments the applied magnetic fields cause a reduction of both the sawtooth amplitude and period, leading to an overall stabilizing effect on the oscillations. In RFX-mod sawteeth eventually disappear and are replaced by a stationary m  =  1, n  =  1 helical equilibrium without an increase in disruptivity. However toroidal rotation is significantly reduced in these plasmas, thus it is likely that the sawtooth mitigation in these experiments is due to the combination of the helically deformed core and the reduced rotation. The former effect is qualitatively well reproduced by nonlinear MHD simulations performed with the PIXIE3D code. The results obtained in these RFX-mod experiments motivated similar ones in DIII-D L-mode diverted Tokamak plasmas at low q 95. These experiments succeeded in reproducing the sawtooth mitigation with the approach developed in RFX-mod. In DIII-D this effect is correlated with a clear increase of the n  =  1 plasma response, that indicates an enhancement of the coupling to the marginally stable n  =  1 external kink, as simulations with the linear MHD code IPEC suggest. A significant rotation braking in the plasma core is also observed in DIII-D. Numerical calculations of the neoclassical toroidal viscosity (NTV) carried out with PENT identify this torque as a possible contributor for this effect.

Multiscale Fiber Kinking: Computational Micromechanics and a Mesoscale Continuum Damage Mechanics Models

NASA Technical Reports Server (NTRS)

Herraez, Miguel; Bergan, Andrew C.; Gonzalez, Carlos; Lopes, Claudio S.

2017-01-01

In this work, the fiber kinking phenomenon, which is known as the failure mechanism that takes place when a fiber reinforced polymer is loaded under longitudinal compression, is studied. A computational micromechanics model is employed to interrogate the assumptions of a recently developed mesoscale continuum damage mechanics (CDM) model for fiber kinking based on the deformation gradient decomposition (DGD) and the LaRC04 failure criteria.

Kink-style detachment folding in Bachu fold belt of central Tarim Basin, China: geometry and seismic interpretation

NASA Astrophysics Data System (ADS)

Bo, Zhang; Jinjiang, Zhang; Shuyu, Yan; Jiang, Liu; Jinhai, Zhang; Zhongpei, Zhang

2010-05-01

The phenomenon of Kink banding is well known throughout the engineering and geophysical sciences. Associated with layered structures compressed in a layer-parallel direction, it arises for example in stratified geological systems under tectonic compression. Our work documented it is also possible to develop super large-scale kink-bands in sedimentary sequences. We interpret the Bachu fold uplift belt of the central Tarim basin in western China to be composed of detachment folds flanked by megascopic-scale kink-bands. Those previous principal fold models for the Bachu uplift belt incorporated components of large-scale thrust faulting, such as the imbricate fault-related fold model and the high-angle, reverse-faulted detachment fold model. Based on our observations in the outcrops and on the two-dimension seismic profiles, we interpret that first-order structures in the region are kink-band style detachment folds to accommodate regional shortening, and thrust faulting can be a second-order deformation style occurring on the limb of the detachment folds or at the cores of some folds to accommodate the further strain of these folds. The belt mainly consists of detachment folds overlying a ductile decollement layer. The crests of the detachment folds are bounded by large-scale kink-bands, which are zones of angularly folded strata. These low-signal-tonoise, low-reflectivity zones observed on seismic profiles across the Bachu belt are poorly imaged sections, which resulted from steeply dipping bedding in the kink-bands. The substantial width (beyond 200m) of these low-reflectivity zones, their sub-parallel edges in cross section, and their orientations at a high angle to layering between 50 and 60 degrees, as well as their conjugate geometry, support a kink-band interpretation. The kink-band interpretation model is based on the Maximum Effective Moment Criteria for continuous deformation, rather than Mohr-Column Criteria for brittle fracture. Seismic modeling is done to

Collagenolytic Matrix Metalloproteinase Activities toward Peptomeric Triple-Helical Substrates.

PubMed

Stawikowski, Maciej J; Stawikowska, Roma; Fields, Gregg B

2015-05-19

Although collagenolytic matrix metalloproteinases (MMPs) possess common domain organizations, there are subtle differences in their processing of collagenous triple-helical substrates. In this study, we have incorporated peptoid residues into collagen model triple-helical peptides and examined MMP activities toward these peptomeric chimeras. Several different peptoid residues were incorporated into triple-helical substrates at subsites P3, P1, P1', and P10' individually or in combination, and the effects of the peptoid residues were evaluated on the activities of full-length MMP-1, MMP-8, MMP-13, and MMP-14/MT1-MMP. Most peptomers showed little discrimination between MMPs. However, a peptomer containing N-methyl Gly (sarcosine) in the P1' subsite and N-isobutyl Gly (NLeu) in the P10' subsite was hydrolyzed efficiently only by MMP-13 [nomenclature relative to the α1(I)772-786 sequence]. Cleavage site analysis showed hydrolysis at the Gly-Gln bond, indicating a shifted binding of the triple helix compared to the parent sequence. Favorable hydrolysis by MMP-13 was not due to sequence specificity or instability of the substrate triple helix but rather was based on the specific interactions of the P7' peptoid residue with the MMP-13 hemopexin-like domain. A fluorescence resonance energy transfer triple-helical peptomer was constructed and found to be readily processed by MMP-13, not cleaved by MMP-1 and MMP-8, and weakly hydrolyzed by MT1-MMP. The influence of the triple-helical structure containing peptoid residues on the interaction between MMP subsites and individual substrate residues may provide additional information about the mechanism of collagenolysis, the understanding of collagen specificity, and the design of selective MMP probes.

RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn

PubMed Central

Schroeder, Kersten T.; Daldrop, Peter; Lilley, David M.J.

2011-01-01

Summary The kink turn is a widespread RNA motif that introduces an acute kink into the axis of duplex RNA, typically comprising a bulge followed by a G⋅A and A⋅G pairs. The kinked conformation is stabilized by metal ions, or the binding of proteins including L7Ae. We now demonstrate a third mechanism for the stabilization of k-turn structure, involving tertiary interactions within a larger RNA structure. The SAM-I riboswitch contains an essential standard k-turn sequence that kinks a helix so that its terminal loop can make a long-range interaction. We find that some sequence variations in the k-turn within the riboswitch do not prevent SAM binding, despite preventing the folding of the k-turn in isolation. Furthermore, two crystal structures show that the sequence-variant k-turns are conventionally folded within the riboswitch. This study shows that the folded structure of the k-turn can be stabilized by tertiary interactions within a larger RNA structure. PMID:21893284

Topologically protected refraction of robust kink states in valley photonic crystals

NASA Astrophysics Data System (ADS)

Gao, Fei; Xue, Haoran; Yang, Zhaoju; Lai, Kueifu; Yu, Yang; Lin, Xiao; Chong, Yidong; Shvets, Gennady; Zhang, Baile

2018-02-01

Recently discovered valley photonic crystals (VPCs) mimic many of the unusual properties of two-dimensional (2D) gapped valleytronic materials. Of the utmost interest to optical communications is their ability to support topologically protected chiral edge (kink) states at the internal domain wall between two VPCs with opposite valley-Chern indices. Here we experimentally demonstrate valley-polarized kink states with polarization multiplexing in VPCs, designed from a spin-compatible four-band model. When the valley pseudospin is conserved, we show that the kink states exhibit nearly perfect out-coupling efficiency into directional beams, through the intersection between the internal domain wall and the external edge separating the VPCs from ambient space. The out-coupling behaviour remains topologically protected even when we break the spin-like polarization degree of freedom (DOF), by introducing an effective spin-orbit coupling in one of the VPC domains. This also constitutes the first realization of spin-valley locking for topological valley transport.

Kink detachment fold in the southwest Montana fold and thrust belt

NASA Astrophysics Data System (ADS)

Mitchell, Michael M.; Woodward, Nicholas B.

1988-02-01

The Hossfeldt anticline in the southwest Montana thrust belt is characterized by a kink geometry and probably overlies a thrust detachment at depth. The mesofabric distribution in the limbs documents that the eastern overturned limb has undergone most of the rotation and internal deformation during folding, leaving the gently dipping western limb virtually undeformed. The anticline exhibits unique mesofabrics in its hinge region that require a pinned anticlinal hinge during its evolution. The half-wavelength of the Hossfeldt anticline-Eustis syncline pair coincides with that predicted from buckling theory, if one considers the massive carbonates of the Paleozoic section as a competent beam. Although the geometry and mesofabric distribution of the Hossfeldt anticline satisfy the geometric requirements of either a fault-propagation fold or a detachment kink fold, the buckling wavelength strongly suggests that its origin was as a kink-buckle fold above a flat detachment rather than as a fault-propagation fold above a thrust ramp.

Wall-touching kink mode calculations with the M3D code

DOE Office of Scientific and Technical Information (OSTI.GOV)

Breslau, J. A., E-mail: jbreslau@pppl.gov; Bhattacharjee, A.

This paper seeks to address a controversy regarding the applicability of the 3D nonlinear extended MHD code M3D [W. Park et al., Phys. Plasmas 6, 1796 (1999)] and similar codes to calculations of the electromagnetic interaction of a disrupting tokamak plasma with the surrounding vessel structures. M3D is applied to a simple test problem involving an external kink mode in an ideal cylindrical plasma, used also by the Disruption Simulation Code (DSC) as a model case for illustrating the nature of transient vessel currents during a major disruption. While comparison of the results with those of the DSC is complicatedmore » by effects arising from the higher dimensionality and complexity of M3D, we verify that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the “Hiro” currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.« less

Godbillon Vey Helicity and Magnetic Helicity in Magnetohydrodynamics

NASA Astrophysics Data System (ADS)

Webb, G. M.; Hu, Q.; Anco, S.; Zank, G. P.

2017-12-01

The Godbillon-Vey invariant arises in homology theory, and algebraic topology, where conditions for a layered family of 2D surfaces forms a 3D manifold were elucidated. The magnetic Godbillon-Vey helicity invariant in magnetohydrodynamics (MHD) is a helicity invariant that occurs for flows, in which the magnetic helicity density hm= A\\cdotB=0 where A is the magnetic vector potential and B is the magnetic induction. Our purpose is to elucidate the evolution of the magnetic Godbillon-Vey field η =A×B/|A|2 and the Godbillon-Vey helicity hgv}= η \\cdot∇ × η in general MHD flows in which the magnetic helicity hm≠q 0. It is shown that hm acts as a source term in the Godbillon-Vey helicity transport equation, in which hm is coupled to hgv via the shear tensor of the background flow. The transport equation for hgv depends on the electric field potential ψ , which is related to the gauge for A, which takes its simplest form for the advected A gauge in which ψ =A\\cdot u where u is the fluid velocity.

Sigmoidal equilibria and eruptive instabilities in laboratory magnetic flux ropes

NASA Astrophysics Data System (ADS)

Myers, C. E.; Yamada, M.; Belova, E.; Ji, H.; Yoo, J.

2013-12-01

The Magnetic Reconnection Experiment (MRX) has recently been modified to study quasi-statically driven line-tied magnetic flux ropes in the context of storage-and-release eruptions in the corona. Detailed in situ magnetic measurements and supporting MHD simulations permit quantitative analysis of the plasma behavior. We find that the behavior of these flux ropes depends strongly on the properties of the applied potential magnetic field arcade. For example, when the arcade is aligned parallel to the flux rope footpoints, force free currents induced in the expanding rope modify the pressure and tension in the arcade, resulting in a confined, quiescent discharge with a saturated kink instability. When the arcade is obliquely aligned to the footpoints, on the other hand, a highly sigmoidal equilibrium forms that can dynamically erupt (see Fig. 1 and Fig. 2). To our knowledge, these storage-and-release eruptions are the first of their kind to be produced in the laboratory. A new 2D magnetic probe array is used to map out the internal structure of the flux ropes during both the storage and the release phases of the discharge. The kink instability and the torus instability are studied as candidate eruptive mechanisms--the latter by varying the vertical gradient of the potential field arcade. We also investigate magnetic reconnection events that accompany the eruptions. The long-term objective of this work is to use internal magnetic measurements of the flux rope structure to better understand the evolution and eruption of comparable structures in the corona. This research is supported by DoE Contract Number DE-AC02-09CH11466 and by the Center for Magnetic Self-Organization (CMSO). Qualitative sketches of flux ropes formed in (1) a parallel potential field arcade; and (2) an oblique potential field arcade. One-dimensional magnetic measurements from (1) a parallel arcade discharge that is confined; and (2) an oblique arcade discharge that erupts.

KINK AND SAUSAGE MODES IN NONUNIFORM MAGNETIC SLABS WITH CONTINUOUS TRANSVERSE DENSITY DISTRIBUTIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, Hui; Li, Bo; Chen, Shao-Xia

2015-11-20

We examine the influence of a continuous density structuring transverse to coronal slabs on the dispersive properties of fundamental standing kink and sausage modes supported therein. We derive generic dispersion relations (DRs) governing linear fast waves in pressureless straight slabs with general transverse density distributions, and focus on cases where the density inhomogeneity takes place in a layer of arbitrary width and in arbitrary form. The physical relevance of the solutions to the DRs is demonstrated by the corresponding time-dependent computations. For all profiles examined, the lowest order kink modes are trapped regardless of longitudinal wavenumber k. A continuous density distribution introducesmore » a difference to their periods of ≲13% when k is the observed range relative to the case where the density profile takes a step function form. Sausage modes and other branches of kink modes are leaky at small k, and their periods and damping times are heavily influenced by how the transverse density profile is prescribed, in particular the length scale. These modes have sufficiently high quality to be observable only for physical parameters representative of flare loops. We conclude that while the simpler DR pertinent to a step function profile can be used for the lowest order kink modes, the detailed information on the transverse density structuring needs to be incorporated into studies of sausage modes and higher order kink modes.« less

Dynamin's helical geometry does not destabilize membranes during fission.

PubMed

McDargh, Zachary A; Deserno, Markus

2018-05-01

It is now widely accepted that dynamin-mediated fission is a fundamentally mechanical process: dynamin undergoes a GTP-dependent conformational change, constricting the neck between two compartments, somehow inducing their fission. However, the exact connection between dynamin's conformational change and the scission of the neck is still unclear. In this paper, we re-evaluate the suggestion that a change in the pitch or radius of dynamin's helical geometry drives the lipid bilayer through a mechanical instability, similar to a well-known phenomenon occurring in soap films. We find that, contrary to previous claims, there is no such instability. This lends credence to an alternative model, in which dynamin drives the membrane up an energy barrier, allowing thermal fluctuations to take it into the hemifission state. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

The Weakly Nonlinear Magnetorotational Instability in a Global, Cylindrical Taylor–Couette Flow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clark, S. E.; Oishi, Jeffrey S., E-mail: seclark@astro.columbia.edu

We conduct a global, weakly nonlinear analysis of the magnetorotational instability (MRI) in a Taylor–Couette flow. This is a multiscale, perturbative treatment of the nonideal, axisymmetric MRI near threshold, subject to realistic radial boundary conditions and cylindrical geometry. We analyze both the standard MRI, initialized by a constant vertical background magnetic field, and the helical MRI, with an azimuthal background field component. This is the first weakly nonlinear analysis of the MRI in a global Taylor–Couette geometry, as well as the first weakly nonlinear analysis of the helical MRI. We find that the evolution of the amplitude of the standardmore » MRI is described by a real Ginzburg–Landau equation (GLE), whereas the amplitude of the helical MRI takes the form of a complex GLE. This suggests that the saturated state of the helical MRI may itself be unstable on long spatial and temporal scales.« less

Abduction of Arm Facilitates Correction of Kinked Peel-Away Sheath During Subclavian Central Line Placement.

PubMed

Kim, Sunghoon

2015-12-01

A tunneled central line catheter placement using a subclavian vein approach can be complicated by an occurrence of peel-away sheath kink which prevents the advancement of the catheter through the sheath. The kink is created due to the angular junction of subclavian and brachiocephalic veins which meet at 90 degree angle. A technique is described which corrects the peel-away sheath kink by extending the subclavian/brachiocephalic vein angle to greater than 90 degrees by abducting the patient's arm. Copyright © 2015 Elsevier Inc. All rights reserved.

Temperature and doping dependence of the high-energy kink in cuprates.

PubMed

Zemljic, M M; Prelovsek, P; Tohyama, T

2008-01-25

It is shown that spectral functions within the extended t-J model, evaluated using the finite-temperature diagonalization of small clusters, exhibit the high-energy kink in single-particle dispersion consistent with recent angle-resolved photoemission results on hole-doped cuprates. The kink and waterfall-like features persist up to large doping and to temperatures beyond J; hence, the origin can be generally attributed to strong correlations and incoherent hole propagation at large binding energies. In contrast, our analysis predicts that electron-doped cuprates do not exhibit these phenomena in photoemission.

Oscillations of kinks on dislocation lines in crystals and low-temperature transport anomalies as a ``passport'' of newly-induced defects

NASA Astrophysics Data System (ADS)

Mezhov-Deglin, L. P.; Mukhin, S. I.

2011-10-01

The possible interpretation of experimental data on low-temperature anomalies in weakly deformed metallic crystals prepared form ultra-pure lead, copper, and silver, as well as in crystals of 4He is discussed within the previously proposed theoretical picture of dislocations with dynamical kinks. In the case of pure metals the theoretical predictions give a general picture of interaction of conduction electrons in a sample with newly-introduced dislocations, containing dynamic kinks in the Peierls potential relief. In the field of random stresses appearing due to plastic deformation of a sample, kinks on the dislocation line form a set of one-dimensional oscillators in potential wells of different shapes. In the low temperature region at low enough density of defects pinning kinks the inelastic scattering of electrons on kinks should lead to deviations from the Wiedemann-Franz law. In particular, the inelastic scattering on kinks should result in a quadratic temperature dependence of the thermal conductivity in a metallic sample along preferential directions of dislocation axes. In the plane normal to the dislocation axis the elastic large-angle scattering of electrons is prevalent. The kink pinning by a point defect or by additional dislocations as well as the sample annealing leading to the disappearance of kinks should induce suppression of transport anomalies. Thus, the energy interval for the spectrum of kink oscillations restricted by characteristic amplitude of the Peierls relief is a "passport of deformation history" for each specific sample. For instance, in copper the temperature/energy region of the order of 1 K corresponds to it. It is also planned to discuss in the other publication applicability of mechanism of phonon scattering on mobile dislocation kinks and pinning of kinks by impurities in order to explain anomalies of phonon thermal conductivity of 4He crystals and deformed crystals of pure lead in a superconducting state.

Coronal loop seismology using damping of standing kink oscillations by mode coupling

NASA Astrophysics Data System (ADS)

Pascoe, D. J.; Goddard, C. R.; Nisticò, G.; Anfinogentov, S.; Nakariakov, V. M.

2016-05-01

Context. Kink oscillations of solar coronal loops are frequently observed to be strongly damped. The damping can be explained by mode coupling on the condition that loops have a finite inhomogeneous layer between the higher density core and lower density background. The damping rate depends on the loop density contrast ratio and inhomogeneous layer width. Aims: The theoretical description for mode coupling of kink waves has been extended to include the initial Gaussian damping regime in addition to the exponential asymptotic state. Observation of these damping regimes would provide information about the structuring of the coronal loop and so provide a seismological tool. Methods: We consider three examples of standing kink oscillations observed by the Atmospheric Imaging Assembly (AIA) of the Solar Dynamics Observatory (SDO) for which the general damping profile (Gaussian and exponential regimes) can be fitted. Determining the Gaussian and exponential damping times allows us to perform seismological inversions for the loop density contrast ratio and the inhomogeneous layer width normalised to the loop radius. The layer width and loop minor radius are found separately by comparing the observed loop intensity profile with forward modelling based on our seismological results. Results: The seismological method which allows the density contrast ratio and inhomogeneous layer width to be simultaneously determined from the kink mode damping profile has been applied to observational data for the first time. This allows the internal and external Alfvén speeds to be calculated, and estimates for the magnetic field strength can be dramatically improved using the given plasma density. Conclusions: The kink mode damping rate can be used as a powerful diagnostic tool to determine the coronal loop density profile. This information can be used for further calculations such as the magnetic field strength or phase mixing rate.

Apex Dips of Experimental Flux Ropes: Helix or Cusp?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wongwaitayakornkul, Pakorn; Haw, Magnus A.; Bellan, Paul M.

We present a new theory for the presence of apex dips in certain experimental flux ropes. Previously such dips were thought to be projections of a helical loop axis generated by the kink instability. However, new evidence from experiments and simulations suggest that the feature is a 2D cusp rather than a 3D helix. The proposed mechanism for cusp formation is a density pileup region generated by nonlinear interaction of neutral gas cones emitted from fast-gas nozzles. The results indicate that density perturbations can result in large distortions of an erupting flux rope, even in the absence of significant pressuremore » or gravitational forces. The density pileup at the apex also suppresses the m = 1 kink mode by acting as a stationary node. Consequently, more accurate density profiles should be considered when attempting to model the stability and shape of solar and astrophysical flux ropes.« less

Advancing High Current Startup via Localized Helicity Injection in the PEGASUS Toroidal Experiment

NASA Astrophysics Data System (ADS)

Hinson, E. T.; Barr, J. L.; Bongard, M. W.; Burke, M. G.; Fonck, R. J.; Perry, J. M.; Redd, A. J.; Schlossberg, D. J.

2013-10-01

Non-solenoidal startup via local helicity injection (LHI) and poloidal field induction is used to produce Ip = 0 . 17 MA tokamak discharges. Impurity contamination has been reduced to negligible levels by use of conical frustum cathode geometry and local scraper limiters. Attainable currents are governed by global limits of helicity and energy balance, and Taylor relaxation. A simple lumped parameter model based on these limits is used to project discharge evolution, and indicates that attaining 1 MA in NSTX-U will require LHI-driven effective loop voltages to dominate contributions from dLp / dt . This regime contrasts with results to date and will be tested at 0.3 MA in PEGASUS with a new integrated multi-injector array. Injector impedance characteristics are consistent with magnetically-limited regimes observed in higher-power foilless diodes. Bursts of MHD are measured on time scales of order ~ 100 μ s, and correlate with rapid equilibrium changes, discrete rises in Ip, redistribution of the toroidal current, ion heating (Ti ~ 1 keV), transient drops in injector voltage, and apparent n = 1 line-tied kink activity at the injector. NIMROD simulations of high-field-side HI discharges in PEGASUS are in qualitative agreement, suggesting Ip buildup results from inward propagating toroidal current loops created by intermittent reconnection of injected current streams. Work supported by US DOE Grant DE-FG02-96ER54375.

Nonlinear MHD simulation of current drive by multi-pulsed coaxial helicity injection in spherical torus

NASA Astrophysics Data System (ADS)

Kanki, Takashi; Nagata, Masayoshi; Kagei, Yasuhiro

2011-10-01

The dynamics of structures of magnetic field, current density, and plasma flow generated during multi-pulsed coaxial helicity injection in spherical torus is investigated by 3-D nonlinear MHD simulations. During the driven phase, the flux and current amplifications occur due to the merging and magnetic reconnection between the preexisting plasma in the confinement region and the ejected plasma from the gun region involving the n = 1 helical kink distortion of the central open flux column (COFC). Interestingly, the diamagnetic poloidal flow which tends toward the gun region is then observed due to the steep pressure gradients of the COFC generated by ohmic heating through an injection current winding around the inboard field lines, resulting in the formation of the strong poloidal flow shear at the interface between the COFC and the core region. This result is consistent with the flow shear observed in the HIST. During the decay phase, the configuration approaches the axisymmetric MHD equilibrium state without flow because of the dissipation of magnetic fluctuation energy to increase the closed flux surfaces, suggesting the generation of ordered magnetic field structure. The parallel current density λ concentrated in the COFC then diffuses to the core region so as to reduce the gradient in λ, relaxing in the direction of the Taylor state.

Helical and rod-shaped bacteria swim in helical trajectories with little additional propulsion from helical shape

PubMed Central

Constantino, Maira A.; Jabbarzadeh, Mehdi; Fu, Henry C.; Bansil, Rama

2016-01-01

It has frequently been hypothesized that the helical body shapes of flagellated bacteria may yield some advantage in swimming ability. In particular, the helical-shaped pathogen Helicobacter pylori is often claimed to swim like a corkscrew through its harsh gastric habitat, but there has been no direct confirmation or quantification of such claims. Using fast time-resolution and high-magnification two-dimensional (2D) phase-contrast microscopy to simultaneously image and track individual bacteria in bacterial broth as well as mucin solutions, we show that both helical and rod-shaped H. pylori rotated as they swam, producing a helical trajectory. Cell shape analysis enabled us to determine shape as well as the rotational and translational speed for both forward and reverse motions, thereby inferring flagellar kinematics. Using the method of regularized Stokeslets, we directly compare observed speeds and trajectories to numerical calculations for both helical and rod-shaped bacteria in mucin and broth to validate the numerical model. Although experimental observations are limited to select cases, the model allows quantification of the effects of body helicity, length, and diameter. We find that due to relatively slow body rotation rates, the helical shape makes at most a 15% contribution to propulsive thrust. The effect of body shape on swimming speeds is instead dominated by variations in translational drag required to move the cell body. Because helical cells are one of the strongest candidates for propulsion arising from the cell body, our results imply that quite generally, swimming speeds of flagellated bacteria can only be increased a little by body propulsion. PMID:28138539

Two Non Linear Dynamics Plasma Astrophysics Experiments At LANL

NASA Astrophysics Data System (ADS)

Intrator, T.; Weber, T.; Feng, Y.; Sears, J.; Smith, R. J.; Swan, H.; Hutchinson, T.; Boguski, J.; Gao, K.; Chapdelaine, L.; Dunn, J. P.

2013-12-01

Two laboratory experiments at Los Alamos National Laboratory (LANL) have been built to gain access to a wide range of fundamental plasma physics issues germane to astro, space, and fusion plasmas. The over arching theme is magnetized plasma dynamics that include currents, MHD forces and instabilities, sheared flows and shocks, along with creation and annihilation of magnetic field. The Relaxation Scaling Experiment (RSX) creates current sheets and flux ropes that exhibit fully 3D dynamics, that are observed to kink, bounce, merge and reconnect, shred, and reform in complicated ways. We show recent movies from a large detailed data set that describe the 3D magnetic structure and helicity budget of a driven and dissipative system that spontaneously self saturates a kink instability. The Magnetized Shock Experiment (MSX) uses a Field reversed configuration (FRC) that is ejected at high speed and then stagnated onto a stopping mirror field, which drives a collisionless magnetized shock. A plasmoid accelerator will also access super critical shocks at much larger Alfven Mach numbers. Unique features include access to parallel, oblique and perpendicular shocks, in regions much larger than ion gyro radius and inertial length, large magnetic and fluid Reynolds numbers, and volume for turbulence.

Two non linear dynamics plasma astrophysics experiments at LANL

NASA Astrophysics Data System (ADS)

Intrator, T. P.; Weber, T. E.; Feng, Y.; Sears, J. A.; Swan, H.; Hutchinson, T.; Boguski, J.; Gao, K.; Chapdelaine, L.; Dunn, J.

2013-10-01

Two laboratory experiments at Los Alamos National Laboratory (LANL) have been built to gain access to a wide range of fundamental plasma physics issues germane astro, space, and fusion plasmas. The over arching theme is magnetized plasma dynamics that include currents, MHD forces and instabilities, sheared flows and shocks, creation and annihilation of magnetic field. The Reconnection Scaling Experiment (RSX) creates current sheets and flux ropes that exhibit fully 3D dynamics, that can kink, bounce, merge and reconnect, shred, and reform in complicated ways. The most recent movies from a large detailed data set describe the 3D magnetic structure and helicity budget of a driven and dissipative system that spontaneously self saturates a kink instability. The Magnetized Shock Experiment (MSX) uses a Field reversed configuration (FRC) that is ejected at high speed and then stagnated onto a stopping mirror field, which drives a collisionless magnetized shock. A plasmoid accelerator will also access super critical shocks at much larger Alfven Mach numbers. Unique features include access to parallel, oblique and perpendicular shocks, in regions much larger than ion gyro radius and inertial length, large magnetic and fluid Reynolds numbers, and volume for turbulence. Center for Magnetic Self Organization, NASA Geospace NNHIOA044I-Basic, Department of Energy DE-AC52-06NA25369.

Chemotaxis without Conventional Two-Component System, Based on Cell Polarity and Aerobic Conditions in Helicity-Switching Swimming of Spiroplasma eriocheiris

PubMed Central

Liu, Peng; Zheng, Huajun; Meng, Qingguo; Terahara, Natsuho; Gu, Wei; Wang, Shengyue; Zhao, Guoping; Nakane, Daisuke; Wang, Wen; Miyata, Makoto

2017-01-01

Spiroplasma eriocheiris is a pathogen that causes mass mortality in Chinese mitten crab, Eriocheir sinensis. S. eriocheiris causes tremor disease and infects almost all of the artificial breeding crustaceans, resulting in disastrous effects on the aquaculture economy in China. S. eriocheiris is a wall-less helical bacterium, measuring 2.0 to 10.0 μm long, and can swim up to 5 μm per second in a viscous medium without flagella by switching the cell helicity at a kink traveling from the front to the tail. In this study, we showed that S. eriocheiris performs chemotaxis without the conventional two-component system, a system commonly found in bacterial chemotaxis. The chemotaxis of S. eriocheiris was observed more clearly when the cells were cultivated under anaerobic conditions. The cells were polarized as evidenced by a tip structure, swimming in the direction of the tip, and were shown to reverse their swimming direction in response to attractants. Triton X-100 treatment revealed the internal structure, a dumbbell-shaped core in the tip that is connected by a flat ribbon, which traces the shortest line in the helical cell shape from the tip to the other pole. Sixteen proteins were identified as the components of the internal structure by mass spectrometry, including Fibril protein and four types of MreB proteins. PMID:28217108

Vortex multiplication in applied flow: A precursor to superfluid turbulence.

PubMed

Finne, A P; Eltsov, V B; Eska, G; Hänninen, R; Kopu, J; Krusius, M; Thuneberg, E V; Tsubota, M

2006-03-03

A surface-mediated process is identified in 3He-B which generates vortices at a roughly constant rate. It precedes a faster form of turbulence where intervortex interactions dominate. This precursor becomes observable when vortex loops are introduced in low-velocity rotating flow at sufficiently low mutual friction dissipation at temperatures below 0.5Tc. Our measurements indicate that the formation of new loops is associated with a single vortex interacting in the applied flow with the sample boundary. Numerical calculations show that the single-vortex instability arises when a helical Kelvin wave expands from a reconnection kink at the wall and then intersects again with the wall.

Step and Kink Dynamics in Inorganic and Protein Crystallization

NASA Technical Reports Server (NTRS)

Chernov, A. A.; Rashkovich, L. N.; Vekilov, P. G.; DeYoreo, J. J.

2004-01-01

Behavior of low-kink-density steps in solution growth and consequences for general understanding of spiral crystal growth processes will be overviewed. Also, influence of turbulence on step bunching and possibility to diminish this bunching will be presented.

Conversion from mutual helicity to self-helicity observed with IRIS

NASA Astrophysics Data System (ADS)

Li, L. P.; Peter, H.; Chen, F.; Zhang, J.

2014-10-01

Context. In the upper atmosphere of the Sun observations show convincing evidence for crossing and twisted structures, which are interpreted as mutual helicity and self-helicity. Aims: We use observations with the new Interface Region Imaging Spectrograph (IRIS) to show the conversion of mutual helicity into self-helicity in coronal structures on the Sun. Methods: Using far UV spectra and slit-jaw images from IRIS and coronal images and magnetograms from SDO, we investigated the evolution of two crossing loops in an active region, in particular, the properties of the Si IV line profile in cool loops. Results: In the early stage two cool loops cross each other and accordingly have mutual helicity. The Doppler shifts in the loops indicate that they wind around each other. As a consequence, near the crossing point of the loops (interchange) reconnection sets in, which heats the plasma. This is consistent with the observed increase of the line width and of the appearance of the loops at higher temperatures. After this interaction, the two new loops run in parallel, and in one of them shows a clear spectral tilt of the Si IV line profile. This is indicative of a helical (twisting) motion, which is the same as to say that the loop has self-helicity. Conclusions: The high spatial and spectral resolution of IRIS allowed us to see the conversion of mutual helicity to self-helicity in the (interchange) reconnection of two loops. This is observational evidence for earlier theoretical speculations. Movie associated with Fig. 1 and Appendix A are available in electronic form at http://www.aanda.org

Two high-mobility group box domains act together to underwind and kink DNA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sánchez-Giraldo, R.; Acosta-Reyes, F. J.; Malarkey, C. S.

The crystal structure of HMGB1 box A bound to an unmodified AT-rich DNA fragment is reported at a resolution of 2 Å. A new mode of DNA recognition for HMG box proteins is found in which two box A domains bind in an unusual configuration generating a highly kinked DNA structure. High-mobility group protein 1 (HMGB1) is an essential and ubiquitous DNA architectural factor that influences a myriad of cellular processes. HMGB1 contains two DNA-binding domains, box A and box B, which have little sequence specificity but have remarkable abilities to underwind and bend DNA. Although HMGB1 box A ismore » thought to be responsible for the majority of HMGB1–DNA interactions with pre-bent or kinked DNA, little is known about how it recognizes unmodified DNA. Here, the crystal structure of HMGB1 box A bound to an AT-rich DNA fragment is reported at a resolution of 2 Å. Two box A domains of HMGB1 collaborate in an unusual configuration in which the Phe37 residues of both domains stack together and intercalate the same CG base pair, generating highly kinked DNA. This represents a novel mode of DNA recognition for HMGB proteins and reveals a mechanism by which structure-specific HMG boxes kink linear DNA.« less

Kink modes and surface currents associated with vertical displacement events

NASA Astrophysics Data System (ADS)

Manickam, Janardhan; Boozer, Allen; Gerhardt, Stefan

2012-08-01

The fast termination phase of a vertical displacement event (VDE) in a tokamak is modeled as a sequence of shrinking equilibria, where the core current profile remains constant so that the safety-factor at the axis, qaxis, remains fixed and the qedge systematically decreases. At some point, the n = 1 kink mode is destabilized. Kink modes distort the magnetic field lines outside the plasma, and surface currents are required to nullify the normal component of the B-field at the plasma boundary and maintain equilibrium at finite pressure. If the plasma touches a conductor, the current can be transferred to the conductor, and may be measurable by the halo current monitors. This report describes a practical method to model the plasma as it evolves during a VDE, and determine the surface currents, needed to maintain equilibrium. The main results are that the onset conditions for the disruption are that the growth-rate of the n = 1 kink exceeds half the Alfven time and the associated surface current needed to maintain equilibrium exceeds one half of the core plasma current. This occurs when qedge drops below a low integer, usually 2. Application to NSTX provides favorable comparison with non-axisymmetric halo-current measurements. The model is also applied to ITER and shows that the 2/1 mode is projected to be the most likely cause of the final disruption.

Low edge safety factor operation and passive disruption avoidance in current carrying plasmas by the addition of stellarator rotational transform

NASA Astrophysics Data System (ADS)

Pandya, M. D.; ArchMiller, M. C.; Cianciosa, M. R.; Ennis, D. A.; Hanson, J. D.; Hartwell, G. J.; Hebert, J. D.; Herfindal, J. L.; Knowlton, S. F.; Ma, X.; Massidda, S.; Maurer, D. A.; Roberds, N. A.; Traverso, P. J.

2015-11-01

Low edge safety factor operation at a value less than two ( q (a )=1 /ι̷tot(a )<2 ) is routine on the Compact Toroidal Hybrid device with the addition of sufficient external rotational transform. Presently, the operational space of this current carrying stellarator extends down to q (a )=1.2 without significant n = 1 kink mode activity after the initial plasma current rise phase of the discharge. The disruption dynamics of these low edge safety factor plasmas depend upon the fraction of helical field rotational transform from external stellarator coils to that generated by the plasma current. We observe that with approximately 10% of the total rotational transform supplied by the stellarator coils, low edge q disruptions are passively suppressed and avoided even though q(a) < 2. When the plasma does disrupt, the instability precursors measured and implicated as the cause are internal tearing modes with poloidal, m, and toroidal, n, helical mode numbers of m /n =3 /2 and 4/3 observed on external magnetic sensors and m /n =1 /1 activity observed on core soft x-ray emissivity measurements. Even though the edge safety factor passes through and becomes much less than q(a) < 2, external n = 1 kink mode activity does not appear to play a significant role in the disruption phenomenology observed.

Bile duct kinking after adult living donor liver transplantation: Case reports and literature review.

PubMed

Wan, Ping; Xia, Qiang; Zhang, Jian Jun; Li, Qi Gen; Xu, Ning; Zhang, Ming; Chen, Xiao Song; Han, Long Zhi

2015-10-01

Regeneration of the partial allograft and the growth of children may cause kinking of the biliary tract after pediatric living donor liver transplantation (LDLT), but bile duct kinking after adult LDLT is rarely reported. We herein presented two patients who suffered from anastomotic strictures caused by severe bile duct kinking after LDLT. The first patient was a 57-year-old woman with hepatitis B virus (HBV)-related liver cirrhosis, who developed biliary stricture 5 months after receiving right-lobe LDLT. Subsequently, endoscopic and percutaneous treatments were attempted, but both failed to solve the problem. The second was a 44-year-old woman also having HBV-related liver cirrhosis. Biliary stricture occurred 14 months after LDLT. Likewise, the guide wire failed to pass through the stricture when endoscopic interventions were conducted. Afterwards, both of the two cases underwent reexploration, showing that compensatory hypertrophy of the allografts resulted in kinking and sharp angulation of the bile ducts, and the anastomotic sites were found to be severely stenotic. Finally, re-anastomosis by Roux-en-Y procedure was successfully performed, and long-term stenosis-free survival was achieved in both of them. Our experience suggests that bile duct kinking after LDLT may play a role in the high incidence of anastomotic strictures in adult LDLT recipients, which may also result in the treatment failure of the non-surgical techniques for anastomotic strictures. Re-anastomosis in the form of Roux-en-Y hepaticojejunostomy is an effective surgical option for the treatment of such a condition. © 2015 Chinese Medical Association Shanghai Branch, Chinese Society of Gastroenterology, Renji Hospital Affiliated to Shanghai Jiaotong University School of Medicine and Wiley Publishing Asia Pty Ltd.

Dynamo-driven plasmoid formation from a current-sheet instability

DOE PAGES

Ebrahimi, F.

2016-12-15

Axisymmetric current-carrying plasmoids are formed in the presence of nonaxisymmetric fluctuations during nonlinear three-dimensional resistive MHD simulations in a global toroidal geometry. In this study, we utilize the helicity injection technique to form an initial poloidal flux in the presence of a toroidal guide field. As helicity is injected, two types of current sheets are formed from the oppositely directed field lines in the injector region (primary reconnecting current sheet), and the poloidal flux compression near the plasma edge (edge current sheet). We first find that nonaxisymmetric fluctuations arising from the current-sheet instability isolated near the plasma edge have tearingmore » parity but can nevertheless grow fast (on the poloidal Alfven time scale). These modes saturate by breaking up the current sheet. Second, for the first time, a dynamo poloidal flux amplification is observed at the reconnection site (in the region of the oppositely directed magnetic field). This fluctuation-induced flux amplification increases the local Lundquist number, which then triggers a plasmoid instability and breaks the primary current sheet at the reconnection site. Finally, the plasmoids formation driven by large-scale flux amplification, i.e., a large-scale dynamo, observed here has strong implications for astrophysical reconnection as well as fast reconnection events in laboratory plasmas.« less

Instability of low viscosity elliptic jets with varying aspect ratio

NASA Astrophysics Data System (ADS)

Kulkarni, Varun

2011-11-01

In this work an analytical description of capillary instability of liquid elliptic jets with varying aspect ratio is presented. Linear stability analysis in the long wave approximation with negligible gravitational effects is employed. Elliptic cylindrical coordinate system is used and perturbation velocity potential substituted in the Laplace equation to yield Mathieu and Modified Mathieu differential equations. The dispersion relation for elliptical orifices of any aspect ratio is derived and validated for axisymmetric disturbances with m = 0, in the limit of aspect ratio, μ = 1 , i.e. the case of a circular jet. As Mathieu functions and Modified Mathieu function solutions converge to Bessel's functions in this limit the Rayleigh-Plateau instability criterion is met. Also, stability of solutions corresponding to asymmetric disturbances for the kink mode, m = 1 and flute modes corresponding to m >= 2 is discussed. Experimental data from earlier works is used to compare observations made for elliptical orifices with μ ≠ 1 . This novel approach aims at generalizing the results pertaining to cylindrical jets with circular cross section leading to better understanding of breakup in liquid jets of various geometries.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sugiyama, Linda E.

The m/n = 1/1 helical ion density 'snake' located near the q = 1 magnetic surface in a toroidal, magnetically confined plasma arises naturally in resistive MHD, when the plasma density evolves separately from pressure. Nonlinear numerical simulations show that a helical density perturbation applied around q = 1 can form a quasi-steady state over q Greater-Than-Or-Equivalent-To 1 with T(tilde sign) of opposite average sign to n. Two principal outcomes depend on the magnitude of n/n and the underlying stability of the 1/1 internal kink mode. For a small q<1 central region, a moderate helical density drives a new, slowlymore » growing type of nonlinear 1/1 internal kink inside q<1, with small n and {nabla}p(tilde sign) Asymptotically-Equal-To {nabla}(nT(tilde sign)). The hot kink core moves away from, or perpendicular to, the high density region near q Asymptotically-Equal-To 1, preserving the snake density during a sawtooth crash. The mode resembles the early stage of heavy-impurity-ion snakes in ohmic discharges, including recent observations in Alcator C-Mod. For a larger, more unstable q<1 region, the helical density perturbation drives a conventional 1/1 kink where n aligns with T(tilde sign), leading to a rapid sawtooth crash. The crash redistributes the density to a localized helical concentration inside q Less-Than-Or-Equivalent-To 1, similar to experimentally observed snakes that are initiated by a sawtooth crash.« less

Lab experiments investigating astrophysical jet physics

NASA Astrophysics Data System (ADS)

Bellan, Paul

2014-10-01

Dynamics relevant to astrophysical plasmas is being investigated in lab experiments having similar physics and topology, but much smaller time and space scales. High speed movies and numerical simulations both show that highly collimated MHD-driven plasma flows are a critical feature; these collimated flows can be considered to be a lab version of an astrophysical jet. Having both axial and azimuthal magnetic fields, the jet is effectively an axially lengthening plasma-confining flux tube with embedded helical magnetic field (flux rope). The jet velocity is in good agreement with an MHD acceleration model. Axial stagnation of the jet compresses embedded azimuthal magnetic flux and so results in jet self-collimation. Jets kink when they breach the Kruskal-Shafranov stability limit. The lateral acceleration of a sufficiently strong kink can provide an effective gravity which provides the environment for a spontaneously-developing, fine-scale, extremely fast Rayleigh-Taylor instability that erodes the current channel to be smaller than the ion skin depth. This cascade from the ideal MHD scale of the kink to the non-MHD ion skin depth scale can result in a fast magnetic reconnection whereby the jet breaks off from its source electrode. Supported by USDOE and NSF.

Dissipative instability in a partially ionised prominence plasma slab

NASA Astrophysics Data System (ADS)

Ballai, I.; Pintér, B.; Oliver, R.; Alexandrou, M.

2017-07-01

Aims: We aim to investigate the nature of dissipative instability appearing in a prominence planar thread filled with partially ionised plasma in the incompressible limit. The importance of partial ionisation is investigated in terms of the ionisation factor and the wavelength of sausage and kink waves propagating in the slab. Methods: In order to highlight the role of partial ionisation, we have constructed models describing various situations we can meet in solar prominence fine structure. Matching the solutions for the transversal component of the velocity and total pressure at the interfaces between the prominence slab and surrounding plasmas, we derived a dispersion relation whose imaginary part describes the evolution of the instability. Results were obtained in the limit of weak dissipation. We have investigated the appearance of instabilities in prominence dark plumes using single and two-fluid approximations. Results: Using simple analytical methods, we show that dissipative instabilities appear for flow speeds that are less than the Kelvin-Helmholtz instability threshold. The onset of instability is determined by the equilibrium flow strength, the ionisation factor of the plasma, the wavelength of waves and the ion-neutral collisional rate. For a given wavelength and for ionisation degrees closer to a neutral gas, the propagating waves become unstable for a narrow band of flow speeds, meaning that neutrals have a stabilising effect. Our results show that the partially ionised plasma describing prominence dark plumes becomes unstable only in a two-fluid (charged particles-neutrals) model, that is for periods that are smaller than the ion-neutral collision time. Conclusions: The present study improves our understanding of the complexity of dynamical processes and stability of solar prominences and the role partial ionisation in destabilising the plasma. We showed the necessity of two-fluid approximation when discussing the nature of instabilities: waves in

Wall touching kink mode calculations with the M3D code

NASA Astrophysics Data System (ADS)

Breslau, J. A.

2014-10-01

In recent years there have been a number of results published concerning the transient vessel currents and forces occurring during a tokamak VDE, as predicted by simulations with the nonlinear MHD code M3D. The nature of the simulations is such that these currents and forces occur at the boundary of the computational domain, making the proper choice of boundary conditions critical to the reliability of the results. The M3D boundary condition includes the prescription that the normal component of the velocity vanish at the wall. It has been argued that this prescription invalidates the calculations because it would seem to rule out the possibility of advection of plasma surface currents into the wall. This claim has been tested by applying M3D to an idealized case - a kink-unstable plasma column - in order to abstract the essential physics from the complications involved in the attempt to model real devices. While comparison of the results is complicated by effects arising from the higher dimensionality and complexity of M3D, we have verified that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the ``Hiro'' currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.

Kelvin-Helmholtz instability in an active region jet observed with Hinode

NASA Astrophysics Data System (ADS)

Zhelyazkov, I.; Chandra, R.; Srivastava, A. K.

2016-02-01

Over past ten years a variety of jet-like phenomena were detected in the solar atmosphere, including plasma ejections over a range of coronal temperatures being observed as extreme ultraviolet (EUV) and X-ray jets. We study the possibility for the development of Kelvin-Helmholtz (KH) instability of transverse magnetohydrodynamic (MHD) waves traveling along an EUV jet situated on the west side of NOAA AR 10938 and observed by three instruments on board Hinode on 2007 January 15/16 (Chifor et al. in Astron. Astrophys. 481:L57, 2008b). The jet was observed around log Te = 6.2 with up-flow velocities exceeded 150 km s^{-1}. Using Fe xii λ186 and λ195 line ratios, the measured densities were found to be above log Ne = 11. We have modeled that EUV jet as a vertically moving magnetic flux tube (untwisted and weakly twisted) and have studied the propagation characteristics of the kink (m = 1) mode and the higher m modes with azimuthal mode numbers m = 2, 3, 4. It turns out that all these MHD waves can become unstable at flow velocities in the range of 112-114.8 km s^{-1}. The lowest critical jet velocity of 112 km s^{-1} is obtained when modeling the jet as compressible plasma contained in an untwisted magnetic flux tube. When the jet and its environments are treated as incompressible media, the critical jet velocity becomes higher, namely 114.8 km s^{-1}. A weak twist of the equilibrium magnetic field in the same approximation of incompressible plasmas slightly decreases the threshold Alfvén Mach number, MA^{cr}, and consequently the corresponding critical velocities, notably to 114.4 km s^{-1} for the kink mode and to 112.4 km s^{-1} for the higher m modes. We have also compared two analytically found criteria for predicting the threshold Alfvén Mach number for the onset of KH instability and have concluded that one of them yields reliable values for MA^{cr}. Our study of the nature of stable and unstable MHD modes propagating on the jet shows that in a stable regime

Helical and rod-shaped bacteria swim in helical trajectories with little additional propulsion from helical shape

NASA Astrophysics Data System (ADS)

Fu, Henry; Constantino, Maira; Jabbarzadeh, Mehdi; Bansil, Rama

2017-11-01

It has frequently been hypothesized that the helical body shapes of flagellated bacteria may yield some advantage in swimming ability. The helical-shaped pathogen Helicobacter pylori allows us to test these claims. Using fast time-resolution and high-magnification phase-contrast microscopy to simultaneously image and track individual bacteria we determine cell body shape as well as rotational and translational speeds. Using the method of regularized Stokeslets, we directly compare observed speeds and trajectories to numerical calculations to validate the numerical model. Although experimental observations are limited to select cases, the model allows quantification of the effects of body helicity, length, and diameter. We find that due to relatively slow body rotation rates, the helical shape makes at most a 15% contribution to propulsive thrust. The effect of body shape on swimming speeds is instead dominated by variations in translational drag required to move the cell body. Because helical cells are one of the strongest candidates for propulsion arising from the cell body, our results imply that quite generally, swimming speeds of flagellated bacteria can only be increased a little by by body propulsion.

Decayless low-amplitude kink oscillations: a common phenomenon in the solar corona?

NASA Astrophysics Data System (ADS)

Anfinogentov, S. A.; Nakariakov, V. M.; Nisticò, G.

2015-11-01

Context. We investigate the decayless regime of coronal kink oscillations recently discovered in the Solar Dynamics Observatory (SDO)/AIA data. In contrast to decaying kink oscillations that are excited by impulsive dynamical processes, this type of transverse oscillations is not connected to any external impulsive impact, such as a flare or coronal mass ejection, and does not show any significant decay. Moreover the amplitude of these decayless oscillations is typically lower than that of decaying oscillations. Aims: The aim of this research is to estimate the prevalence of this phenomenon and its characteristic signatures. Methods: We analysed 21 active regions (NOAA 11637-11657) observed in January 2013 in the 171 Å channel of SDO/AIA. For each active region we inspected six hours of observations, constructing time-distance plots for the slits positioned across pronounced bright loops. The oscillatory patterns in time-distance plots were visually identified and the oscillation periods and amplitudes were measured. We also estimated the length of each oscillating loop. Results: Low-amplitude decayless kink oscillations are found to be present in the majority of the analysed active regions. The oscillation periods lie in the range from 1.5 to 10 min. In two active regions with insufficient observation conditions we did not identify any oscillation patterns. The oscillation periods are found to increase with the length of the oscillating loop. Conclusions: The considered type of coronal oscillations is a common phenomenon in the corona. The established dependence of the oscillation period on the loop length is consistent with their interpretation in terms of standing kink waves. Appendix A is available in electronic form at http://www.aanda.org

A hybrid Rayleigh-Taylor-current-driven coupled instability in a magnetohydrodynamically collimated cylindrical plasma with lateral gravity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhai, Xiang, E-mail: xzhai@caltech.edu; Bellan, Paul M., E-mail: pbellan@caltech.edu

We present an MHD theory of Rayleigh-Taylor instability on the surface of a magnetically confined cylindrical plasma flux rope in a lateral external gravity field. The Rayleigh-Taylor instability is found to couple to the classic current-driven instability, resulting in a new type of hybrid instability that cannot be described by either of the two instabilities alone. The lateral gravity breaks the axisymmetry of the system and couples all azimuthal modes together. The coupled instability, produced by combination of helical magnetic field, curvature of the cylindrical geometry, and lateral gravity, is fundamentally different from the classic magnetic Rayleigh-Taylor instability occurring atmore » a two-dimensional planar interface. The theory successfully explains the lateral Rayleigh-Taylor instability observed in the Caltech plasma jet experiment [Moser and Bellan, Nature 482, 379 (2012)]. Potential applications of the theory include magnetic controlled fusion, solar emerging flux, solar prominences, coronal mass ejections, and other space and astrophysical plasma processes.« less

Fermion number of twisted kinks in the NJL2 model revisited

NASA Astrophysics Data System (ADS)

Thies, Michael

2018-03-01

As a consequence of axial current conservation, fermions cannot be bound in localized lumps in the massless Nambu-Jona-Lasinio model. In the case of twisted kinks, this manifests itself in a cancellation between the valence fermion density and the fermion density induced in the Dirac sea. To attribute the correct fermion number to these bound states requires an infrared regularization. Recently, this has been achieved by introducing a bare fermion mass, at least in the nonrelativistic regime of small twist angles and fermion numbers. Here, we propose a simpler regularization using a finite box which preserves integrability and can be applied at any twist angle. A consistent and physically plausible assignment of fermion number to all twisted kinks emerges.

Kinked silicon nanowires-enabled interweaving electrode configuration for lithium-ion batteries.

PubMed

Sandu, Georgiana; Coulombier, Michael; Kumar, Vishank; Kassa, Hailu G; Avram, Ionel; Ye, Ran; Stopin, Antoine; Bonifazi, Davide; Gohy, Jean-François; Leclère, Philippe; Gonze, Xavier; Pardoen, Thomas; Vlad, Alexandru; Melinte, Sorin

2018-06-28

A tri-dimensional interweaving kinked silicon nanowires (k-SiNWs) assembly, with a Ni current collector co-integrated, is evaluated as electrode configuration for lithium ion batteries. The large-scale fabrication of k-SiNWs is based on a procedure for continuous metal assisted chemical etching of Si, supported by a chemical peeling step that enables the reuse of the Si substrate. The kinks are triggered by a simple, repetitive etch-quench sequence in a HF and H 2 O 2 -based etchant. We find that the inter-locking frameworks of k-SiNWs and multi-walled carbon nanotubes exhibit beneficial mechanical properties with a foam-like behavior amplified by the kinks and a suitable porosity for a minimal electrode deformation upon Li insertion. In addition, ionic liquid electrolyte systems associated with the integrated Ni current collector repress the detrimental effects related to the Si-Li alloying reaction, enabling high cycling stability with 80% capacity retention (1695 mAh/g Si ) after 100 cycles. Areal capacities of 2.42 mAh/cm 2 (1276 mAh/g electrode ) can be achieved at the maximum evaluated thickness (corresponding to 1.3 mg Si /cm 2 ). This work emphasizes the versatility of the metal assisted chemical etching for the synthesis of advanced Si nanostructures for high performance lithium ion battery electrodes.

Apex Dips of Experimental Flux Ropes: Helix or Cusp?

NASA Astrophysics Data System (ADS)

Haw, Magnus; Wongwaitayakornkul, Pakorn; Li, Hui; Li, Shengtai; Bellan, Paul M.

2017-10-01

We present a new theory for the presence of apex dips in certain experimental flux ropes. Previously such dips were thought to be projections of a helical loop axis generated by the kink instability. However, new evidence from experiments and simulations suggest that the feature is a 2D cusp rather than a 3D helix. The proposed mechanism for cusp formation is a density pileup region generated by nonlinear interaction of neutral gas cones emitted from fast-gas nozzles. The results indicate that small density perturbations can result in large distortions of an erupting flux rope, even in the absence of significant pressure or gravity forces. The density pileup at the apex also suppresses the m=1 kink mode by acting as a stationary node. Consequently, more accurate density profiles should be considered when attempting to precisely model the stability and eruption of solar flux ropes such as CME's. This work was supported by NSF under award 1348393, AFOSR under award FA9550-11-1-0184, and DOE under awards DE-FG02-04ER54755 and DE-SC0010471.

An Exploratory Study of a New Kink Activity: "Pup Play".

PubMed

Wignall, Liam; McCormack, Mark

2017-04-01

This study presents the narratives and experiences of 30 gay and bisexual men who participate in a behavior known as "pup play." Never empirically studied before, we use in-depth interviews and a modified form of grounded theory to describe the dynamics of pup play and develop a conceptual framework with which to understand it. We discuss the dynamics of pup play, demonstrating that it primarily consists of mimicking the behaviors and adopting the role of a dog. We show that the majority of participants use pup play for sexual satisfaction. It is also a form of relaxation, demonstrated primarily through the existence of a "headspace." We classify pup play as a kink, and find no evidence for the framing of it as a form of zoophilia. We call for further research on pup play as a sexual kink and leisure activity from both qualitative and quantitative perspectives.

Stimuli-Driven Control of the Helical Axis of Self-Organized Soft Helical Superstructures.

PubMed

Bisoyi, Hari Krishna; Bunning, Timothy J; Li, Quan

2018-06-01

Supramolecular and macromolecular functional helical superstructures are ubiquitous in nature and display an impressive catalog of intriguing and elegant properties and performances. In materials science, self-organized soft helical superstructures, i.e., cholesteric liquid crystals (CLCs), serve as model systems toward the understanding of morphology- and orientation-dependent properties of supramolecular dynamic helical architectures and their potential for technological applications. Moreover, most of the fascinating device applications of CLCs are primarily determined by different orientations of the helical axis. Here, the control of the helical axis orientation of CLCs and its dynamic switching in two and three dimensions using different external stimuli are summarized. Electric-field-, magnetic-field-, and light-irradiation-driven orientation control and reorientation of the helical axis of CLCs are described and highlighted. Different techniques and strategies developed to achieve a uniform lying helix structure are explored. Helical axis control in recently developed heliconical cholesteric systems is examined. The control of the helical axis orientation in spherical geometries such as microdroplets and microshells fabricated from these enticing photonic fluids is also explored. Future challenges and opportunities in this exciting area involving anisotropic chiral liquids are then discussed. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Biot-Savart helicity versus physical helicity: A topological description of ideal flows

NASA Astrophysics Data System (ADS)

Sahihi, Taliya; Eshraghi, Homayoon

2014-08-01

For an isentropic (thus compressible) flow, fluid trajectories are considered as orbits of a family of one parameter, smooth, orientation-preserving, and nonsingular diffeomorphisms on a compact and smooth-boundary domain in the Euclidian 3-space which necessarily preserve a finite measure, later interpreted as the fluid mass. Under such diffeomorphisms the Biot-Savart helicity of the pushforward of a divergence-free and tangent to the boundary vector field is proved to be conserved and since these circumstances present an isentropic flow, the conservation of the "Biot-Savart helicity" is established for such flows. On the other hand, the well known helicity conservation in ideal flows which here we call it "physical helicity" is found to be an independent constant with respect to the Biot-Savart helicity. The difference between these two helicities reflects some topological features of the domain as well as the velocity and vorticity fields which is discussed and is shown for simply connected domains the two helicities coincide. The energy variation of the vorticity field is shown to be formally the same as for the incompressible flow obtained before. For fluid domains consisting of several disjoint solid tori, at each time, the harmonic knot subspace of smooth vector fields on the fluid domain is found to have two independent base sets with a special type of orthogonality between these two bases by which a topological description of the vortex and velocity fields depending on the helicity difference is achieved since this difference is shown to depend only on the harmonic knot parts of velocity, vorticity, and its Biot-Savart vector field. For an ideal magnetohydrodynamics (MHD) flow three independent constant helicities are reviewed while the helicity of magnetic potential is generalized for non-simply connected domains by inserting a special harmonic knot field in the dynamics of the magnetic potential. It is proved that the harmonic knot part of the vorticity

Resistive MHD modelling of the quasi-single helicity state in the KTX regimes

NASA Astrophysics Data System (ADS)

Luo, Bing; Zhu, Ping; Li, Hong; Liu, Wandong; KTX Team

2018-01-01

The potential formation of a quasi-single-helicity (QSH) state in the Keda Torus eXperiment (KTX) is investigated in resistive MHD simulations using the NIMROD code. We focus on the effects of finite resistivity on the mode structure and characteristics of the dominant linear and nonlinear resistive tearing-mode in a finite β, cylindrical configuration of a reversed field pinch model for KTX. In the typical resistive regimes of KTX where the Lundquist number S=5 × 104 , the plasma transitions to a steady QSH state after evolving through an initial transient phase with multiple helicities. The dominant mode of the QSH state develops from the dominant linear tearing mode instability. In the lower β regime, the QSH state is intermittent and short in duration; in the higher β regime, the QSH state persists for a longer time and should be more easily observed in experiments.

Hydrodynamic mode associated with the pinch flow in RFP simulations

NASA Astrophysics Data System (ADS)

Delzanno, Gian Luca; Chacon, Luis; Finn, John

2007-11-01

We present a systematic study of single helicity (SH) states and quasi-single helicity (QSH) states in RFPs. We begin with cylindrical paramagnetic pinch equilibria with uniform resistivity, characterized by a single dimensionless parameter proportional to the toroidal electric field, or the RFP toroidal current parameter θ. For sufficiently high θ, there are several unstable m=1 ideal MHD instabilities, typically one of which is nonresonant, with 1/n just above q(r=0). We evolve these modes nonlinearly to saturation for low Hartmann number H. We show the existence of a new class of unstable modes [1], besides the electromagnetic kink modes typically responsible for the reversal of the axial magnetic field at the edge in RFPs. This new instability is hydrodynamic in nature and is due to the inward equilibrium pinch flow and suitable boundary conditions. In these circumstances, the total angular momentum of the system must grow in response to the flux of particles coming from the boundary. The hydrodynamic mode dominates the nonlinear phase of the velocity field but has little effect on the dynamics of the magnetic field. [1] G.L. Delzanno, L. Chac'on, J.M. Finn, Hydrodynamic mode associated with the pinch flow in Reversed Field Pinch simulations, submitted (2007).

Particle drift model for Z-pinch-driven magneto-Rayleigh-Taylor instability

NASA Astrophysics Data System (ADS)

Dan, Jia Kun; Xu, Qiang; Wang, Kun Lun; Ren, Xiao Dong; Huang, Xian Bin

2016-09-01

A theoretical model of Z-pinch driven magneto-Rayleigh-Taylor instability is proposed based on the particle drift point of view, which can explain the helical instability structure observed in premagnetized imploding liner experiments. It is demonstrated that all possible drift motions, including polarization drift, gradient drift, and curvature drift, which can lead to charge separations, each will attribute to an effective gravity acceleration. Theoretical predictions given by this model are dramatically different from those given by previous theories which have been readily recovered in the theory presented here as a limiting case. The theory shows qualitative agreement with available experimental data of the pitch angle and provides certain predictions to be verified.

Diffusion on an Ising chain with kinks

NASA Astrophysics Data System (ADS)

Hamma, Alioscia; Mansour, Toufik; Severini, Simone

2009-07-01

We count the number of histories between the two degenerate minimum energy configurations of the Ising model on a chain, as a function of the length n and the number d of kinks that appear above the critical temperature. This is equivalent to count permutations of length n avoiding certain subsequences depending on d. We give explicit generating functions and compute the asymptotics. The setting considered has a role when describing dynamics induced by quantum Hamiltonians with deconfined quasi-particles.

Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d

PubMed Central

Chen, Chin-Yu; Ko, Tzu-Ping; Lin, Ting-Wan; Chou, Chia-Cheng; Chen, Chun-Jung; Wang, Andrew H.-J.

2005-01-01

Sac7d, a small, abundant, sequence-general DNA-binding protein from the hyperthermophilic archaeon Sulfolobus acidocaldarius, causes a single-step sharp kink in DNA (∼60°) via the intercalation of both Val26 and Met29. These two amino acids were systematically changed in size to probe their effects on DNA kinking. Eight crystal structures of five Sac7d mutant–DNA complexes have been analyzed. The DNA-binding pattern of the V26A and M29A single mutants is similar to that of the wild-type, whereas the V26A/M29A protein binds DNA without side chain intercalation, resulting in a smaller overall bending (∼50°). The M29F mutant inserts the Phe29 side chain orthogonally to the C2pG3 step without stacking with base pairs, inducing a sharp kink (∼80°). In the V26F/M29F-GCGATCGC complex, Phe26 intercalates deeply into DNA bases by stacking with the G3 base, whereas Phe29 is stacked on the G15 deoxyribose, in a way similar to those used by the TATA box-binding proteins. All mutants have reduced DNA-stabilizing ability, as indicated by their lower Tm values. The DNA kink patterns caused by different combinations of hydrophobic side chains may be relevant in understanding the manner by which other minor groove-binding proteins interact with DNA. PMID:15653643

Statistical description of the motion of dislocation kinks in a random field of impurities adsorbed by a dislocation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Petukhov, B. V., E-mail: petukhov@ns.crys.ras.r

2010-01-15

A model has been proposed for describing the influence of impurities adsorbed by dislocation cores on the mobility of dislocation kinks in materials with a high crystalline relief (Peierls barriers). The delay time spectrum of kinks at statistical fluctuations of the impurity density has been calculated for a sufficiently high energy of interaction between impurities and dislocations when the migration potential is not reduced to a random Gaussian potential. It has been shown that fluctuations in the impurity distribution substantially change the character of the migration of dislocation kinks due to the slow decrease in the probability of long delaymore » times. The dependences of the position of the boundary of the dynamic phase transition to a sublinear drift of kinks x {proportional_to} t{sup {delta}} ({delta} {sigma} 1) and the characteristics of the anomalous mobility on the physical parameters (stress, impurity concentration, experimental temperature, etc.) have been calculated.« less

Experimental and theoretical developments in the Mochi project

NASA Astrophysics Data System (ADS)

You, Setthivoine; von der Linden, Jens; Vereen, Keon; Lavine, Eric Sander; Carroll, Evan; Card, Alexander; Azuara-Rosales, Manuel; Quinley, Morgan; Yun, Gunsu

2015-11-01

The Mochi project investigates the interaction between magnetic fields and plasma flows in cylindrical and toroidal geometries. The configuration is designed to tailor the radial electric field profile with three annular electrodes and allow for shear helical flows in magnetized plasma jets or merging spheromaks. First plasma has been achieved and characterization is in progress with images, magnetic probes, an energy analyzer, an interferometer, a fast ion gauge, and optical and RF spectroscopy. Vector tomography of ion Doppler spectroscopy is progressing with the design of the custom fiber bundle and implementation of the numerical code. The first experiments are investigating the coupling of sausage and kink instabilities, comparing measurements to a new stability criterion and a numerical stability code. A new canonical field theory has been developed to help interpret the dynamics of plasma self-organization. The theory augments the Lagrangian of general dynamical systems to rigourously demonstrate that canonical helicity transport is valid across single particle, kinetic and fluid regimes, that dynamical equations can be re-formulated as a form of Maxwell's equations, and that helicity is conserved only when density gradients are shallow. This work is supported by US DOE Grant DE-SC0010340.

Damping profile of standing kink oscillations observed by SDO/AIA

NASA Astrophysics Data System (ADS)

Pascoe, D. J.; Goddard, C. R.; Nisticò, G.; Anfinogentov, S.; Nakariakov, V. M.

2016-01-01

Aims: Strongly damped standing and propagating kink oscillations are observed in the solar corona. This can be understood in terms of mode coupling, which causes the wave energy to be converted from the bulk transverse oscillation to localised, unresolved azimuthal motions. The damping rate can provide information about the loop structure, and theory predicts two possible damping profiles. Methods: We used the recently compiled catalogue of decaying standing kink oscillations of coronal loops to search for examples with high spatial and temporal resolution and sufficient signal quality to allow the damping profile to be examined. The location of the loop axis was tracked, detrended, and fitted with sinusoidal oscillations with Gaussian and exponential damping profiles. Results: Using the highest quality data currently available, we find that for the majority of our cases a Gaussian profile describes the damping behaviour at least as well as an exponential profile, which is consistent with the recently developed theory for the damping profile due to mode coupling.

Bearing capacity of helical pile foundation in peat soil from different, diameter and spacing of helical plates

NASA Astrophysics Data System (ADS)

Fatnanta, F.; Satibi, S.; Muhardi

2018-03-01

In an area dominated by thick peat soil layers, driven piles foundation is often used. These piles are generally skin friction piles where the pile tips do not reach hard stratum. Since the bearing capacity of the piles rely on the resistance of their smooth skin, the bearing capacity of the piles are generally low. One way to increase the bearing capacity of the piles is by installing helical plates around the pile tips. Many research has been performed on helical pile foundation. However, literature on the use of helical pile foundation on peat soil is still hardly found. This research focus on the study of axial bearing capacity of helical pile foundation in peat soil, especially in Riau Province. These full-scale tests on helical pile foundation were performed in a rectangular box partially embedded into the ground. The box is filled with peat soil, which was taken from Rimbo Panjang area in the district of Kampar, Riau Province. Several helical piles with different number, diameter and spacing of the helical plates have been tested and analysed. The tests result show that helical pile with three helical plates of uniform diameter has better bearing capacity compared to other helical piles with varying diameter and different number of helical plates. The bearing capacity of helical pile foundation is affected by the spacing between helical plates. It is found that the effective helical plates spacing for helical pile foundation with diameter of 15cm to 35cm is between 20cm to 30cm. This behaviour may be considered to apply to other type of helical pile foundations in peat soil.

Trehalose radial networks protect Renilla luciferase helical layers against thermal inactivation.

PubMed

Liyaghatdar, Zahra; Emamzadeh, Rahman; Rasa, Sayed Mohammad Mahdi; Nazari, Mahboobeh

2017-12-01

Renilla luciferase (Rluc) from Renilla reniformis is an appropriate protein reporter for the detection of specific molecular targets due to its bioluminescent feature, although its relatively low stability limits the application. To investigate the effects of trehalose and sucrose as chemical chaperones on the kinetic stability of Rluc, we assayed the activity of the enzyme in the presence of these additives at high temperatures and to comprehend the mechanism of stability, molecular dynamic (MD) simulation was carried out. In the presence of trehalose a thermostabilizing effect which was considerable in comparison with other systems was observed. It is proposed that a wide radial like network of trehalose molecules supports α-helix structures that are located in the N-terminus and C-terminus of the protein. However, in the water simulation box, these helices alter to instable structures at high temperatures. Reduction of the fluctuation of these helices in the presence of trehalose molecules, may prevent the protein from unfolding and increase its shelf life. Copyright © 2017 Elsevier B.V. All rights reserved.

Results in a consecutive series of 83 surgical corrections of symptomatic stenotic kinking of the internal carotid artery.

PubMed

Illuminati, Giulio; Ricco, Jean-Baptiste; Caliò, Francesco G; D'Urso, Antonio; Ceccanei, Gianluca; Vietri, Francesco

2008-01-01

Although there is a growing body of evidence to document the safety and efficacy of operative treatment of carotid stenosis, surgical indications for elongation and kinking of the internal carotid artery remain controversial. The goal of this study was to evaluate the efficacy of surgical correction of internal carotid artery kinking in patients with persistent hemispheric symptoms despite antiplatelet therapy. A consecutive series of 81 patients (mean age, 64 years) underwent 83 surgical procedures to correct kinking of the internal carotid artery either by shortening and reimplanting the vessel on the common carotid artery, inserting a bypass graft, or transposing the vessel onto the external carotid artery. Mean follow-up was 56 months (range, 15-135 months). Study endpoints were 30-day mortality and any stroke occurring during follow-up. No postoperative death was observed. The postoperative stroke rate was 1%. Primary patency, freedom from neurologic symptoms, and late survival at 5 years (x +/- standard deviation) were 89 +/- 4.1%, 92 +/- 4%, and 71 +/- 6%, respectively. The findings of this study indicate that surgical correction for symptomatic stenotic kinking of the internal carotid artery is safe and effective in relieving symptoms and preventing stroke. Operative correction should be considered as the standard treatment for patients with symptomatic carotid kinking that does not respond to antiplatelet therapy.

Magnetic helical micromachines.

PubMed

Peyer, Kathrin E; Tottori, Soichiro; Qiu, Famin; Zhang, Li; Nelson, Bradley J

2013-01-02

Helical microrobots have the potential to be used in a variety of application areas, such as in medical procedures, cell biology, or lab-on-a-chip. They are powered and steered wirelessly using low-strength rotating magnetic fields. The helical shape of the device allows propulsion through numerous types of materials and fluids, from tissue to different types of bodily fluids. Helical propulsion is suitable for pipe flow conditions or for 3D swimming in open fluidic environments. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Self-Assembly of Helical Ribbons

NASA Astrophysics Data System (ADS)

Zastavker, Yevgeniya V.; Asherie, Neer; Lomakin, Aleksey; Pande, Jayanti; Donovan, Joanne M.; Schnur, Joel M.; Benedek, George B.

1999-07-01

The self-assembly of helical ribbons is examined in a variety of multicomponent enantiomerically pure systems that contain a bile salt or a nonionic detergent, a phosphatidylcholine or a fatty acid, and a steroid analog of cholesterol. In almost all systems, two different pitch types of helical ribbons are observed: high pitch, with a pitch angle of 54± 2 degrees, and low pitch, with a pitch angle of 11± 2 degrees. Although the majority of these helices are right-handed, a small proportion of left-handed helices is observed. Additionally, a third type of helical ribbon, with a pitch angle in the range 30-47 degrees, is occasionally found. These experimental findings suggest that the helical ribbons are crystalline rather than liquid crystal in nature and also suggest that molecular chirality may not be the determining factor in helix formation. The large yields of helices produced will permit a systematic investigation of their individual kinetic evolution and their elastic moduli.

Magnetic design constraints of helical solenoids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lopes, M. L.; Krave, S. T.; Tompkins, J. C.

2015-01-30

Helical solenoids have been proposed as an option for a Helical Cooling Channel for muons in a proposed Muon Collider. Helical solenoids can provide the required three main field components: solenoidal, helical dipole, and a helical gradient. In general terms, the last two are a function of many geometric parameters: coil aperture, coil radial and longitudinal dimensions, helix period and orbit radius. In this paper, we present design studies of a Helical Solenoid, addressing the geometric tunability limits and auxiliary correction system.

Resonant kink-antikink scattering through quasinormal modes

NASA Astrophysics Data System (ADS)

Dorey, Patrick; Romańczukiewicz, Tomasz

2018-04-01

We investigate the role that quasinormal modes can play in kink-antikink collisions, via an example based on a deformation of the ϕ4 model. We find that narrow quasinormal modes can store energy during collision processes and later return it to the translational degrees of freedom. Quasinormal modes also decay, which leads to energy leakage, causing a closing of resonance windows and an increase of the critical velocity. We observe similar phenomena in an effective model, a small modification of the collective-coordinate approach to the ϕ4 model.

Experiments on the instabilities in swirling and non-swirling free jets

NASA Astrophysics Data System (ADS)

Panda, Jayanta

1990-08-01

Instabilities present in a free swirling jet in Reynolds number range from 20,000 to 60,000 and swirl number of 0.45 were studied using smoke visualization and hot wire measurements. A nonswirling jet of Reynolds number 60,000 produced from the same facility was also studied for validation of the experimental procedures and direct comparison with the swirling jet. Time-mean velocity components and turbulence intensity were surveyed using a single hot wire (nonswirling jet) and a V wire (swirling jet) probe. To enhance the understanding of these instabilities, axisymmetric and helical waves were excited in the Strouhal number range 0.75 to 1.5 (swirling jet) and 0.9 to 3.75 (nonswirling jet) by acoustic excitation.

Observation of the Kelvin–Helmholtz Instability in a Solar Prominence

NASA Astrophysics Data System (ADS)

Yang, Heesu; Xu, Zhi; Lim, Eun-Kyung; Kim, Sujin; Cho, Kyung-Suk; Kim, Yeon-Han; Chae, Jongchul; Cho, Kyuhyoun; Ji, Kaifan

2018-04-01

Many solar prominences end their lives in eruptions or abrupt disappearances that are associated with dynamical or thermal instabilities. Such instabilities are important because they may be responsible for energy transport and conversion. We present a clear observation of a streaming kink-mode Kelvin–Helmholtz Instability (KHI) taking place in a solar prominence using the Hα Lyot filter installed at the New Vacuum Solar Telescope, Fuxian-lake Solar Observatory in Yunnan, China. On one side of the prominence, a series of plasma blobs floated up from the chromosphere and streamed parallel to the limb. The plasma stream was accelerated to about 20–60 km s‑1 and then undulated. We found that 2″- and 5″-size vortices formed, floated along the stream, and then broke up. After the 5″-size vortex, a plasma ejection out of the stream was detected in the Solar Dynamics Observatory/Atmospheric Imaging Assembly images. Just before the formation of the 5″-size vortex, the stream displayed an oscillatory transverse motion with a period of 255 s with the amplitude growing at the rate of 0.001 s‑1. We attribute this oscillation of the stream and the subsequent formation of the vortex to the KHI triggered by velocity shear between the stream, guided by the magnetic field and the surrounding media. The plasma ejection suggests the transport of prominence material into the upper layer by the KHI in its nonlinear stage.

STABILITY OF ROTATING MAGNETIZED JETS IN THE SOLAR ATMOSPHERE. I. KELVIN–HELMHOLTZ INSTABILITY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zaqarashvili, Teimuraz V.; Zhelyazkov, Ivan; Ofman, Leon, E-mail: teimuraz.zaqarashvili@uni-graz.at

2015-11-10

Observations show various jets in the solar atmosphere with significant rotational motions, which may undergo instabilities leading to heat ambient plasma. We study the Kelvin–Helmholtz instability (KHI) of twisted and rotating jets caused by the velocity jumps near the jet surface. We derive a dispersion equation with appropriate boundary conditions for total pressure (including centrifugal force of tube rotation), which governs the dynamics of incompressible jets. Then, we obtain analytical instability criteria of KHI in various cases, which were verified by numerical solutions to the dispersion equation. We find that twisted and rotating jets are unstable to KHI when themore » kinetic energy of rotation is more than the magnetic energy of the twist. Our analysis shows that the azimuthal magnetic field of 1–5 G can stabilize observed rotations in spicule/macrospicules and X-ray/extreme-ultraviolet (EUV) jets. On the other hand, nontwisted jets are always unstable to KHI. In this case, the instability growth time is several seconds for spicule/macrospicules and a few minutes (or less) for EUV/X-ray jets. We also find that standing kink and torsional Alfvén waves are always unstable near the antinodes, owing to the jump of azimuthal velocity at the surface, while the propagating waves are generally stable. Kelvin–Helmholtz (KH) vortices may lead to enhanced turbulence development and heating of surrounding plasma; therefore, rotating jets may provide energy for chromospheric and coronal heating.« less

Effects of Defects on the Mechanical Properties of Kinked Silicon Nanowires.

PubMed

Chen, Yun; Zhang, Cheng; Li, Liyi; Tuan, Chia-Chi; Chen, Xin; Gao, Jian; He, Yunbo; Wong, Ching-Ping

2017-12-01

Kinked silicon nanowires (KSiNWs) have many special properties that make them attractive for a number of applications. The mechanical properties of KSiNWs play important roles in the performance of sensors. In this work, the effects of defects on the mechanical properties of KSiNWs are studied using molecular dynamics simulations and indirectly validated by experiments. It is found that kinks are weak points in the nanowire (NW) because of inharmonious deformation, resulting in a smaller elastic modulus than that of straight NWs. In addition, surface defects have more significant effects on the mechanical properties of KSiNWs than internal defects. The effects of the width or the diameter of the defects are larger than those of the length of the defects. Overall, the elastic modulus of KSiNWs is not sensitive to defects; therefore, KSiNWs have a great potential as strain or stress sensors in special applications.

Surface currents associated with external kink modes in tokamak plasmas during a major disruption

NASA Astrophysics Data System (ADS)

Ng, C. S.; Bhattacharjee, A.

2017-10-01

The surface current on the plasma-vacuum interface during a disruption event involving kink instability can play an important role in driving current into the vacuum vessel. However, there have been disagreements over the nature or even the sign of the surface current in recent theoretical calculations based on idealized step-function background plasma profiles. We revisit such calculations by replacing step-function profiles with more realistic profiles characterized by a strong but finite gradient along the radial direction. It is shown that the resulting surface current is no longer a delta-function current density, but a finite and smooth current density profile with an internal structure, concentrated within the region with a strong plasma pressure gradient. Moreover, this current density profile has peaks of both signs, unlike the delta-function case with a sign opposite to, or the same as the plasma current. We show analytically and numerically that such current density can be separated into two parts, with one of them, called the convective current density, describing the transport of the background plasma density by the displacement, and the other part that remains, called the residual current density. It is argued that consideration of both types of current density is important and can resolve past controversies.

Coiled-coil intermediate filament stutter instability and molecular unfolding.

PubMed

Arslan, Melis; Qin, Zhao; Buehler, Markus J

2011-05-01

Intermediate filaments (IFs) are the key components of cytoskeleton in eukaryotic cells and are critical for cell mechanics. The building block of IFs is a coiled-coil alpha-helical dimer, consisting of several domains that include linkers and other structural discontinuities. One of the discontinuities in the dimer's coiled-coil region is the so-called 'stutter' region. The stutter is a region where a variation of the amino acid sequence pattern from other parts of the alpha-helical domains of the protein is found. It was suggested in earlier works that due to this sequence variation, the perfect coiled-coil arrangement ceases to exist. Here, we show using explicit water molecular dynamics and well-tempered metadynamics that for the coil2 domain of vimentin IFs the stutter is more stable in a non-alpha-helical, unfolded state. This causes a local structural disturbance in the alpha helix, which has a global effect on the nanomechanics of the structure. Our analysis suggests that the stutter features an enhanced tendency to unfolding even under the absence of external forces, implying a much greater structural instability than previously assumed. As a result it features a smaller local bending stiffness than other segments and presents a seed for the initiation of molecular bending and unfolding at large deformation.

Pulling Helices inside Bacteria: Imperfect Helices and Rings

NASA Astrophysics Data System (ADS)

Allard, Jun F.; Rutenberg, Andrew D.

2009-04-01

We study steady-state configurations of intrinsically-straight elastic filaments constrained within rod-shaped bacteria that have applied forces distributed along their length. Perfect steady-state helices result from axial or azimuthal forces applied at filament ends, however azimuthal forces are required for the small pitches observed for MreB filaments within bacteria. Helix-like configurations can result from distributed forces, including coexistence between rings and imperfect helices. Levels of expression and/or bundling of the polymeric protein could mediate this coexistence.

Ion flow measurements during the rotating kink behavior of the central column in the HIST device

NASA Astrophysics Data System (ADS)

Yamada, S.; Yoshikawa, T.; Hashimoto, S.; Nishioka, T.; Kikuchi, Y.; Fukumoto, N.; Nagata, M.

2007-11-01

Plasma flow is essentially driven in self-organization and magnetic reconnection process of compact spherical torus (ST) and spheromak in the helicity-driven systems. For example, when reversing the external toroidal field of ST, the direction not only of the plasma current but also of the toroidal ion flow is self-reversed during the formation of the flipped ST relaxed states. Mach probe measurement shows that the velocity of the ion flow reversed after the flip increases to about 20 km/s. We have been newly developing an ion Doppler spectrometer (IDS) system using a compact 16 or 64 channel photomultiplier tube (PMT) in order to measure the spatial profile of ion temperature and rotation velocity in the HIST device. The IDS system consists of a light collection system including optical fibers, 1 m-spectrometer and the PMT detector. The optical fibers covered with glass tubes are inserted into the plasma. The glass tubes can be rotated in the poloidal and the toroidal directions. The new IDS system will be applied to observations of ion temperature and plasma rotation in the flipped ST formation and in the MHD control of kinking behaviors of the central column by using the rotating magnetic field (RMF). Preliminary IDS results will be compared to those from Mach probe measurements in space.

Magnetic helicity balance at Taylor relaxed states sustained by AC helicity injection

NASA Astrophysics Data System (ADS)

Hirota, Makoto; Morrison, Philip J.; Horton, Wendell; Hattori, Yuji

2017-10-01

Magnitudes of Taylor relaxed states that are sustained by AC magnetic helicity injection (also known as oscillating field current drive, OFCD) are investigated numerically in a cylindrical geometry. Compared with the amplitude of the oscillating magnetic field at the skin layer (which is normalized to 1), the strength of the axial guide field Bz 0 is shown to be an important parameter. The relaxation process seems to be active only when Bz 0 < 1 . Moreover, in the case of weak guide field Bz 0 < 0.2 , a helically-symmetric relaxed state is self-generated instead of the axisymmetric reversed-field pinch. As a theoretical model, the helicity balance is considered in a similar way to R. G. O'Neill et al., where the helicity injection rate is directly equated with the dissipation rate at the Taylor states. Then, the bifurcation to the helical Taylor state is predicted theoretically and the estimated magnitudes of the relaxed states reasonably agree with numerical results as far as Bz 0 < 1 . This work was supported by JSPS KAKENHI Grant Number 16K05627.

Quasi-particles ultrafastly releasing kink bosons to form Fermi arcs in a cuprate superconductor.

PubMed

Ishida, Y; Saitoh, T; Mochiku, T; Nakane, T; Hirata, K; Shin, S

2016-01-05

In a conventional framework, superconductivity is lost at a critical temperature (Tc) because, at higher temperatures, gluing bosons can no longer bind two electrons into a Cooper pair. In high-Tc cuprates, it is still unknown how superconductivity vanishes at Tc. We provide evidence that the so-called ≲ 70-meV kink bosons that dress the quasi-particle excitations are playing a key role in the loss of superconductivity in a cuprate. We irradiated a 170-fs laser pulse on Bi2Sr2CaCu2O(8+δ) and monitored the responses of the superconducting gap and dressed quasi-particles by time- and angle-resolved photoemission spectroscopy. We observe an ultrafast loss of superconducting gap near the d-wave node, or light-induced Fermi arcs, which is accompanied by spectral broadenings and weight redistributions occurring within the kink binding energy. We discuss that the underlying mechanism of the spectral broadening that induce the Fermi arc is the undressing of quasi-particles from the kink bosons. The loss mechanism is beyond the conventional framework, and can accept the unconventional phenomena such as the signatures of Cooper pairs remaining at temperatures above Tc.

Quasi-particles ultrafastly releasing kink bosons to form Fermi arcs in a cuprate superconductor

PubMed Central

Ishida, Y.; Saitoh, T.; Mochiku, T.; Nakane, T.; Hirata, K.; Shin, S.

2016-01-01

In a conventional framework, superconductivity is lost at a critical temperature (Tc) because, at higher temperatures, gluing bosons can no longer bind two electrons into a Cooper pair. In high-Tc cuprates, it is still unknown how superconductivity vanishes at Tc. We provide evidence that the so-called ≲70-meV kink bosons that dress the quasi-particle excitations are playing a key role in the loss of superconductivity in a cuprate. We irradiated a 170-fs laser pulse on Bi2Sr2CaCu2O8+δ and monitored the responses of the superconducting gap and dressed quasi-particles by time- and angle-resolved photoemission spectroscopy. We observe an ultrafast loss of superconducting gap near the d-wave node, or light-induced Fermi arcs, which is accompanied by spectral broadenings and weight redistributions occurring within the kink binding energy. We discuss that the underlying mechanism of the spectral broadening that induce the Fermi arc is the undressing of quasi-particles from the kink bosons. The loss mechanism is beyond the conventional framework, and can accept the unconventional phenomena such as the signatures of Cooper pairs remaining at temperatures above Tc. PMID:26728626

Pulling helices inside bacteria: imperfect helices and rings

NASA Astrophysics Data System (ADS)

Rutenberg, Andrew; Allard, Jun

2009-03-01

We study steady-state configurations of intrinsically-straight elastic filaments constrained within rod-shaped bacteria that have applied forces distributed along their length. Perfect steady-state helices result from axial or azimuthal forces applied at filament ends, however azimuthal forces are required for the small pitches observed for MreB filaments within bacteria. Helix-like configurations can result from distributed forces, including co-existence between rings and imperfect helices. Levels of expression and/or bundling of the polymeric protein could mediate this co-existence.

Enhancement of optic cup detection through an improved vessel kink detection framework

NASA Astrophysics Data System (ADS)

Wong, Damon W. K.; Liu, Jiang; Tan, Ngan Meng; Zhang, Zhuo; Lu, Shijian; Lim, Joo Hwee; Li, Huiqi; Wong, Tien Yin

2010-03-01

Glaucoma is a leading cause of blindness. The presence and extent of progression of glaucoma can be determined if the optic cup can be accurately segmented from retinal images. In this paper, we present a framework which improves the detection of the optic cup. First, a region of interest is obtained from the retinal fundus image, and a pallor-based preliminary cup contour estimate is determined. Patches are then extracted from the ROI along this contour. To improve the usability of the patches, adaptive methods are introduced to ensure the patches are within the optic disc and to minimize redundant information. The patches are then analyzed for vessels by an edge transform which generates pixel segments of likely vessel candidates. Wavelet, color and gradient information are used as input features for a SVM model to classify the candidates as vessel or non-vessel. Subsequently, a rigourous non-parametric method is adopted in which a bi-stage multi-resolution approach is used to probe and localize the location of kinks along the vessels. Finally, contenxtual information is used to fuse pallor and kink information to obtain an enhanced optic cup segmentation. Using a batch of 21 images obtained from the Singapore Eye Research Institute, the new method results in a 12.64% reduction in the average overlap error against a pallor only cup, indicating viable improvements in the segmentation and supporting the use of kinks for optic cup detection.

A proline-hinge alters the characteristics of the amphipathic α-helical AMPs.

PubMed

Lee, Jong Kook; Gopal, Ramamourthy; Park, Seong-Cheol; Ko, Hyun Sook; Kim, Yangmee; Hahm, Kyung-Soo; Park, Yoonkyung

2013-01-01

HP (2-20) is a 19-aa, amphipathic, α-helical peptide with antimicrobial properties that was derived from the N-terminus of Helicobacter pylori ribosomal protein L1. We previously showed that increasing the net hydrophobicity of HP (2-20) by substituting Trp for Gln(17) and Asp(19) (Anal 3) increased the peptide's antimicrobial activity. In hydrophobic medium, Anal 3 forms an amphipathic structure consisting of an N-terminal random coil region (residues 2-5) and an extended helical region (residues 6-20). To investigate the structure-activity relationship of Anal 3, we substituted Pro for Glu(9) (Anal 3-Pro) and then examined the new peptide's three-dimensional structure, antimicrobial activity and mechanism of action. Anal 3-Pro had an α-helical structure in the presence of trifluoroethanol (TFE) and sodium dodecyl sulfate (SDS). NMR spectroscopic analysis of Anal 3-Pro's tertiary structure in SDS micelles confirmed that the kink potential introduced by Pro(10) was responsible for the helix distortion. We also found that Anal 3-Pro exhibited about 4 times greater antimicrobial activity than Anal 3. Fluorescence activated flow cytometry and confocal fluorescence microscopy showed that incorporating a Pro-hinge into Anal 3 markedly reduced its membrane permeability so that it accumulated in the cytoplasm without remaining in the cell membrane. To investigate the translocation mechanism, we assessed its ability to release of FITC-dextran. The result showed Anal 3-Pro created a pore <1.8 nm in diameter, which is similar to buforin II. Notably, scanning electron microscopic observation of Candida albicans revealed that Anal 3-Pro and buforin II exert similar effects on cell membranes, whereas magainin 2 exerts a different, more damaging, effect. In addition, Anal 3-Pro assumed a helix-hinge-helix structure in the presence of biological membranes and formed micropores in both bacterial and fungal membranes, through which it entered the cytoplasm and tightly bound to

Design of the Helicity Injected Torus with Steady Inductive Helicity Injection (HIT-SI)

NASA Astrophysics Data System (ADS)

Sieck, P. E.; Gu, P.; Hamp, W. T.; Izzo, V. A.; McCollam, K. J.; Jarboe, T. R.; Nelson, B. A.; Redd, A. J.; Rogers, J. A.; Shumlak, U.

2000-10-01

Steady Inductive Helicity Injection (SIHI) is an inductive current drive method that injects helicity at a nearly constant rate, without open field lines, and without removing any helicity or magnetic energy from the plasma(T.R. Jarboe, Fusion Technology 36), p. 85, 1999. SIHI directly produces a rotating magnetic field structure, and the current profile is nearly time independent in the frame of the rotating field. The Helicity Injected Torus with SIHI (HIT-SI) is a ``bow tie'' spheromak designed to implement SIHI so that the current profile in the rotating frame is optimized. SIHI is accomplished using two inductive helicity injectors that operate 90^o out of phase with each other. Each helicity injector is a 180^o segment of a ZT-P size (a ≈ 8cm, R ≈ 32cm) RFP. The presence of a spheromak equilibrium will be readily apparent on several diagnostics, including the surface magnetic probes. The design of HIT-SI is presented, including the manufacturing techniques and metallurgical processes being used in the construction of the one-meter diameter close-fitting flux conserver. Several small prototype tests have been performed to prove the vacuum seal and electrical insulation capabilities of the design, and a finite element stress analysis of the flux conserver will be presented.

Kinked Loop Stretching Between Two Active Regions

NASA Image and Video Library

2017-07-25

Numerous arches of magnetic field lines danced and swayed above a large active region over about a 30-hour period (July 17-18, 2017). We can also see the magnetic field lines from the large active region reached out and connected with a smaller active region. Those linked lines then strengthened (become brighter), but soon began to develop a kink in them and rather swiftly faded from view. All of this activity is driven by strong magnetic forces associated with the active regions. The images were taken in a wavelength of extreme ultraviolet light. https://photojournal.jpl.nasa.gov/catalog/PIA21838

Prevention of Kinked Stent Graft Limb Due to Severe Angulated Proximal Neck during Endovascular Repair for Abdominal Aortic Aneurysm.

PubMed

Oh, Pyung Chun; Kim, Minsu; Shin, Eak Kyun; Kang, Woong Chol

2018-04-20

Although the technology of endovascular aortic repair (EVAR) for abdominal aortic aneurysm (AAA) is evolving that make it appealing for challenging anatomy, proximal aortic neck morphology, especially severe angulation, is still one of the most determinants for a successful procedure. We describe a patient of AAA with severely angulated proximal neck, in whom kinked stent graft limb occurred against severe angulation of proximal neck. Then, we suggested how to prevent this complication in the second patient. Our case demonstrated the stent graft limb could be kinked by severe aortic neck angulation, making it challenging. However, the kinked stent graft limb could be prevented by deploying stent graft limbs below the most severely angulated aortic neck intentionally.

Synchronous oscillation prior to disruption caused by kink modes in HL-2A tokamak plasmas

NASA Astrophysics Data System (ADS)

Jiang, M.; Hu, D.; Wang, X. G.; Shi, Z. B.; Xu, Y.; Chen, W.; Ding, X. T.; Zhong, W. L.; Dong, Y. B.; Ji, X. Q.; Zhang, Y. P.; Gao, J. M.; Li, J. X.; Yang, Z. C.; Li, Y. G.; Liu, Y.

2015-08-01

A class of evident MHD activities prior to major disruption has been observed during recent radiation induced disruptions of the HL-2A tokamak discharges. It can be named SOD, synchronous oscillations prior to disruption, characterized by synchronous oscillation of electron cyclotron emission (ECE), core soft x-ray, Mirnov coil, and {{D}α} radiation signals at the divertor plate. The SOD activity is mostly observed in a parametric regime where the poloidal beta is low enough before disruption, typically corresponding to those radiation-induced disruptions. It has been found that the m/n = 2/1 mode is dominant during the SODs, and consequently it is the drop of the mode frequency and the final mode locking that lead to thermal quench. The mode frequency before the mode locking corresponds to the toroidal rotation frequency of the edge plasma. It is also found that during SODs, the location of the q = 2 surface is moving outward, and most of the plasma current is enclosed within the surface. This demonstrates that the current channel lies inside the rational surface during SOD, and thus the resistive kink mode is unstable. Further analysis of the electron temperature perturbation structure shows that the plasma is indeed dominated by the resistive kink mode, with kink-like perturbation in the core plasma region. It suggests that it is the nonlinear growth of the m/n = 2/1 resistive kink mode and its higher order harmonics, rather than the spontaneous overlapping of multiple neighboring islands, that ultimately triggered the disruption.

Flexible helical-axis stellarator

DOEpatents

Harris, Jeffrey H.; Hender, Timothy C.; Carreras, Benjamin A.; Cantrell, Jack L.; Morris, Robert N.

1988-01-01

An 1=1 helical winding which spirals about a conventional planar, circular central conductor of a helical-axis stellarator adds a significant degree of flexibility by making it possible to control the rotational transform profile and shear of the magnetic fields confining the plasma in a helical-axis stellarator. The toroidal central conductor links a plurality of toroidal field coils which are separately disposed to follow a helical path around the central conductor in phase with the helical path of the 1=1 winding. This coil configuration produces bean-shaped magnetic flux surfaces which rotate around the central circular conductor in the same manner as the toroidal field generating coils. The additional 1=1 winding provides flexible control of the magnetic field generated by the central conductor to prevent the formation of low-order resonances in the rotational transform profile which can produce break-up of the equilibrium magnetic surfaces. Further, this additional winding can deepen the magnetic well which together with the flexible control provides increased stability.

Helicity patterns on the Sun

NASA Astrophysics Data System (ADS)

Pevtsov, A.

Solar magnetic fields exhibit hemispheric preference for negative (pos- itive) helicity in northern (southern) hemisphere. The hemispheric he- licity rule, however, is not very strong, - the patterns of opposite sign helicity were observed on different spatial scales in each hemisphere. For instance, many individual sunspots exhibit patches of opposite he- licity inside the single polarity field. There are also helicity patterns on scales larger than the size of typical active region. Such patterns were observed in distribution of active regions with abnormal (for a give hemisphere) helicity, in large-scale photospheric magnetic fields and coronal flux systems. We will review the observations of large-scale pat- terns of helicity in solar atmosphere and their possible relationship with (sub-)photospheric processes. The emphasis will be on large-scale pho- tospheric magnetic field and solar corona.

A MAGNETOHYDRODYNAMIC MODEL OF THE M87 JET. I. SUPERLUMINAL KNOT EJECTIONS FROM HST-1 AS TRAILS OF QUAD RELATIVISTIC MHD SHOCKS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nakamura, Masanori; Garofalo, David; Meier, David L., E-mail: nakamura@stsci.ed, E-mail: david.a.garofalo@jpl.nasa.go, E-mail: david.l.meier@jpl.nasa.go

2010-10-01

This is the first in a series of papers that introduces a new paradigm for understanding the jet in M87: a collimated relativistic flow in which strong magnetic fields play a dominant dynamical role. Here, we focus on the flow downstream of HST-1-an essentially stationary flaring feature that ejects trails of superluminal components. We propose that these components are quad relativistic magnetohydrodynamic shock fronts (forward/reverse fast and slow modes) in a narrow jet with a helically twisted magnetic structure. And we demonstrate the properties of such shocks with simple one-dimensional numerical simulations. Quasi-periodic ejections of similar component trails may bemore » responsible for the M87 jet substructures observed further downstream on 10{sup 2}-10{sup 3} pc scales. This new paradigm requires the assimilation of some new concepts into the astrophysical jet community, particularly the behavior of slow/fast-mode waves/shocks and of current-driven helical kink instabilities. However, the prospects of these ideas applying to a large number of other jet systems may make this worth the effort.« less

The next large helical devices

NASA Astrophysics Data System (ADS)

Iiyoshi, Atsuo; Yamazaki, Kozo

1995-06-01

Helical systems have the strong advantage of inherent steady-state operation for fusion reactors. Two large helical devices with fully superconducting coil systems are presently under design and construction. One is the LHD (Large Helical Device) [Fusion Technol. 17, 169 (1990)] with major radius=3.9 m and magnetic field=3-4 T, that is under construction during 1990-1997 at NIFS (National Institute for Fusion Science), Nagoya/Toki, Japan; it features continuous helical coils and a clean helical divertor focusing on edge configuration optimization. The other one in the W7-X (Wendelstein 7-X) [in Plasma Physics and Controlled Fusion Nuclear Research, 1990, (International Atomic Energy Agency, Vienna, 1991), Vol. 3, p. 525] with major radius=5.5 m and magnetic field=3 T, that is under review at IPP (Max-Planck Institute for Plasma Physics), Garching, Germany; it has adopted a modular coil system after elaborate optimization studies. These two programs are complementary in promoting world helical fusion research and in extending the understanding of toroidal plasmas through comparisons with large tokamaks.

DNS of helicity-induced stratified turbulent flow

NASA Astrophysics Data System (ADS)

Chandy, Abhilash J.; Rahimi, Abbas

2013-11-01

Helical flows undergoing density stratification have wide applications in meteorological phenomena such as dust devils, tornadoes, and hurricanes due to the complexity and disasters caused by them. Direct numerical simulations (DNS) of transition to turbulence in a stably stratified Boussinesq fluid are presented for different rotation and stratification intensities. In order to understand the effect of velocity on the energy cascade, comparisons are made between helicity initiated and non-helical flows. Results show that stratification decelerates the helicity decay and causes velocity and vorticity to align with each other. With respect to the helical and non-helical flow comparisons, the total energy in the presence of stratification decays faster with helicity. In addition, the behavior of length scales were examined by comparing temporal variations of the vertical shearing of velocities. Results showed a growing asymmetry with time in the case of helical flow, while non-helical flow stayed close to begin symmetric.

Magnetic swirls and associated fast magnetoacoustic kink waves in a solar chromospheric flux tube

NASA Astrophysics Data System (ADS)

Murawski, K.; Kayshap, P.; Srivastava, A. K.; Pascoe, D. J.; Jelínek, P.; Kuźma, B.; Fedun, V.

2018-02-01

We perform numerical simulations of impulsively generated magnetic swirls in an isolated flux tube that is rooted in the solar photosphere. These swirls are triggered by an initial pulse in a horizontal component of the velocity. The initial pulse is launched either (a) centrally, within the localized magnetic flux tube or (b) off-central, in the ambient medium. The evolution and dynamics of the flux tube are described by three-dimensional, ideal magnetohydrodynamic equations. These equations are numerically solved to reveal that in case (a) dipole-like swirls associated with the fast magnetoacoustic kink and m = 1 Alfvén waves are generated. In case (b), the fast magnetoacoustic kink and m = 0 Alfvén modes are excited. In both these cases, the excited fast magnetoacoustic kink and Alfvén waves consist of a similar flow pattern and magnetic shells are also generated with clockwise and counter-clockwise rotating plasma within them, which can be the proxy of dipole-shaped chromospheric swirls. The complex dynamics of vortices and wave perturbations reveals the channelling of sufficient amount of energy to fulfil energy losses in the chromosphere (˜104 W m-1) and in the corona (˜102 W m-1). Some of these numerical findings are reminiscent of signatures in recent observational data.

A GLOBAL GALACTIC DYNAMO WITH A CORONA CONSTRAINED BY RELATIVE HELICITY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prasad, A.; Mangalam, A., E-mail: avijeet@iiap.res.in, E-mail: mangalam@iiap.res.in

We present a model for a global axisymmetric turbulent dynamo operating in a galaxy with a corona that treats the parameters of turbulence driven by supernovae and by magneto-rotational instability under a common formalism. The nonlinear quenching of the dynamo is alleviated by the inclusion of small-scale advective and diffusive magnetic helicity fluxes, which allow the gauge-invariant magnetic helicity to be transferred outside the disk and consequently to build up a corona during the course of dynamo action. The time-dependent dynamo equations are expressed in a separable form and solved through an eigenvector expansion constructed using the steady-state solutions ofmore » the dynamo equation. The parametric evolution of the dynamo solution allows us to estimate the final structure of the global magnetic field and the saturated value of the turbulence parameter α{sub m}, even before solving the dynamical equations for evolution of magnetic fields in the disk and the corona, along with α-quenching. We then solve these equations simultaneously to study the saturation of the large-scale magnetic field, its dependence on the small-scale magnetic helicity fluxes, and the corresponding evolution of the force-free field in the corona. The quadrupolar large-scale magnetic field in the disk is found to reach equipartition strength within a timescale of 1 Gyr. The large-scale magnetic field in the corona obtained is much weaker than the field inside the disk and has only a weak impact on the dynamo operation.« less

Fully Kinetic Large-scale Simulations of the Collisionless Magnetorotational Instability

NASA Astrophysics Data System (ADS)

Inchingolo, Giannandrea; Grismayer, Thomas; Loureiro, Nuno F.; Fonseca, Ricardo A.; Silva, Luis O.

2018-06-01

We present two-dimensional particle-in-cell simulations of the fully kinetic collisionless magnetorotational instability (MRI) in weakly magnetized (high β) pair plasma. The central result of this numerical analysis is the emergence of a self-induced turbulent regime in the saturation state of the collisionless MRI, which can only be captured for large enough simulation domains. One of the underlying mechanisms for the development of this turbulent state is the drift-kink instability (DKI) of the current sheets resulting from the nonlinear evolution of the channel modes. The onset of the DKI can only be observed for simulation domain sizes exceeding several linear MRI wavelengths. The DKI and ensuing magnetic reconnection activate the turbulent motion of the plasma in the late stage of the nonlinear evolution of the MRI. At steady-state, the magnetic energy has an MHD-like spectrum with a slope of k ‑5/3 for kρ < 1 and k ‑3 for sub-Larmor scale (kρ > 1). We also examine the role of the collisionless MRI and associated magnetic reconnection in the development of pressure anisotropy. We study the stability of the system due to this pressure anisotropy, observing the development of mirror instability during the early-stage of the MRI. We further discuss the importance of magnetic reconnection for particle acceleration during the turbulence regime. In particular, consistent with reconnection studies, we show that at late times the kinetic energy presents a characteristic slope of ɛ ‑2 in the high-energy region.

The Emergence of Kinked Flux Tubes as the Source of Delta-Spots on the Photosphere

NASA Astrophysics Data System (ADS)

Knizhnik, K. J.; Linton, M.; Norton, A. A.; DeVore, C. R.

2017-12-01

It has been observationally well established that the magnetic configurations most favorable to producing energetic flaring events reside in so called delta-spots. These delta-spots are a subclass of sunspots, and are classified as sunspots which have umbrae (dark regions in the interior of sunspots) with opposite magnetic polarities that share a common penumbra. They are characterized by strong rotation and an extremely compact magnetic configuration, and are observed to follow an inverse-Hale law. They are also observed to have strong twist. It has been shown that over 90% of X-class flares that occurred during solar cycles 22 and 23 originated in delta-spots (Guo, Lin & Deng, 2014). Understanding the origin of delta-spots, therefore, is a crucial step towards the ultimate goal of space weather forecasting. In this work, we argue that delta-spots arise during the emergence of kinked flux tubes into the corona, and that their unique properties are due to the emergence of knots present in the kink mode of twisted flux tubes. We present numerical simulations that study the emergence of both kink-stable and unstable flux tubes into the solar corona, and demonstrate quantitatively that their photospheric signatures are drastically different, with the latter flux tubes demonstrating strong coherent rotation and a very tight flux distribution on the photosphere. We show that the coronal magnetic field resulting from the emergence of a kinked flux tube contains more free energy than the unkinked case, potentially leading to more energetic flares. We discuss the implications of our simulations for observations. This work was supported by the Chief of Naval Research through the National Research Council.

Observations of decay-less low-amplitude kink oscillations of EUV coronal loops

NASA Astrophysics Data System (ADS)

Nisticò, Giuseppe; Nakariakov, Valery; Anfinogentov, Sergey

The high spatial and temporal resolution observations at Extreme Ultra-Violet (EUV) wavelengths from the Atmospheric Imaging Assembly (AIA) of the Solar Dynamics Observatory (SDO) reveal new features in kink oscillations of coronal loops. We show that, in addition to the well-known rapidly decaying oscillations, a new type of kink waves is present, characterized by low-amplitude and undamped oscillations, that we define as decay-less. Typical periods range from 2.5 to 12 min in both regimes and are different for different loops, increasing with the loop length. Estimates of the loop lengths are supported by three dimensional reconstruction of the loop geometry. The amplitude for the decay-less regime is about 1 Mm, close to the spatial resolution of the AIA instruments. The oscillation phase, measured by the cross-correlation method, is found to be constant along each analysed loop, and the spatial structure of the phase of the oscillations corresponds to the fundamental standing kink mode. We show that the observed behaviours are consistent with the empirical model of a damped linear oscillator excited by a continuous low-amplitude harmonic driver, in addition to an eventual impulsive high-amplitude driver. The observed life-time of the oscillations is likely to be determined by the observational conditions rather than any physical damping. However, the balance between the driving and damping is a necessary ingredient of this model. The properties of this type of transverse oscillations make them interesting object of study in the framework of resonant absorption theory and coronal heating process.

Helicity in dynamic atmospheric processes

NASA Astrophysics Data System (ADS)

Kurgansky, M. V.

2017-03-01

An overview on the helicity of the velocity field and the role played by this concept in modern research in the field of geophysical fluid dynamics and dynamic meteorology is given. Different (both previously known in the literature and first presented) formulations of the equation of helicity balance in atmospheric motions (including those with allowance for effects of air compressibility and Earth's rotation) are brought together. Equations and relationships are given which are valid in different approximations accepted in dynamic meteorology: Boussinesq approximation, quasi-static approximation, and quasi-geostrophic approximation. Emphasis is placed on the analysis of helicity budget in large-scale quasi-geostrophic systems of motion; a formula for the helicity flux across the upper boundary of the nonlinear Ekman boundary layer is given, and this flux is shown to be exactly compensated for by the helicity destruction inside the Ekman boundary layer.

Dynamics of internetwork chromospheric fibrils: Basic properties and magnetohydrodynamic kink waves

NASA Astrophysics Data System (ADS)

Mooroogen, K.; Morton, R. J.; Henriques, V.

2017-11-01

Aims: Current observational instruments are now providing data with the necessary temporal and spatial cadences required to examine highly dynamic, fine-scale magnetic structures in the solar atmosphere. Using the spectroscopic imaging capabilities of the Swedish Solar Telescope, we aim to provide the first investigation on the nature and dynamics of elongated absorption features (fibrils) observed in Hα in the internetwork. Methods: We observe and identify a number of internetwork fibrils, which form away from the kilogauss, network magnetic flux, and we provide a synoptic view on their behaviour. The internetwork fibrils are found to support wave-like behaviour, which we interpret as magnetohydrodynamic (MHD) kink waves. The properties of these waves, that is, amplitude, period, and propagation speed, are measured from time-distance diagrams and we attempt to exploit them via magneto-seismology in order to probe the variation of plasma properties along the wave-guides. Results: We found that the Internetwork (IN) fibrils appear, disappear, and re-appear on timescales of tens of minutes, suggesting that they are subject to repeated heating. No clear photospheric footpoints for the fibrils are found in photospheric magnetograms or Hα wing images. However, we suggest that they are magnetised features as the majority of them show evidence of supporting propagating MHD kink waves, with a modal period of 120 s. Additionally, one IN fibril is seen to support a flow directed along its elongated axis, suggesting a guiding field. The wave motions are found to propagate at speeds significantly greater than estimates for typical chromospheric sound speeds. Through their interpretation as kink waves, the measured speeds provide an estimate for local average Alfvén speeds. Furthermore, the amplitudes of the waves are also found to vary as a function of distance along the fibrils, which can be interpreted as evidence of stratification of the plasma in the neighbourhood of

Disconnections kinks and competing modes in shear-coupled grain boundary migration

NASA Astrophysics Data System (ADS)

Combe, N.; Mompiou, F.; Legros, M.

2016-01-01

The response of small-grained metals to mechanical stress is investigated by a theoretical study of the elementary mechanisms occurring during the shear-coupled migration of grain boundaries (GB). Investigating a model Σ 17 (410 ) GB in a copper bicrystal, both <110 > and <100 > GB migration modes are studied focusing on both the structural and energetic characteristics. The minimum energy paths of these shear-coupled GB migrations are computed using the nudge elastic band method. For both modes, the GB migration occurs through the nucleation and motion of disconnections. However, the atomic mechanisms of both modes qualitatively differ: While the <110 > mode presents no metastable state, the <100 > mode shows multiple metastable states, some of them evidencing some kinks along the disconnection lines. Disconnection kinks nucleation and motion activation energies are evaluated. Besides, the activation energies of the <100 > mode are smaller than those of the <110 > one except for very high stresses. These results significantly improve our knowledge of the GB migration mechanisms and the conditions under which they occur.

Fission and fusion interaction phenomena of mixed lump kink solutions for a generalized (3+1)-dimensional B-type Kadomtsev-Petviashvili equation

NASA Astrophysics Data System (ADS)

Liu, Yaqing; Wen, Xiaoyong

2018-05-01

In this paper, a generalized (3+1)-dimensional B-type Kadomtsev-Petviashvili (gBKP) equation is investigated by using the Hirota’s bilinear method. With the aid of symbolic computation, some new lump, mixed lump kink and periodic lump solutions are derived. Based on the derived solutions, some novel interaction phenomena like the fission and fusion interactions between one lump soliton and one kink soliton, the fission and fusion interactions between one lump soliton and a pair of kink solitons and the interactions between two periodic lump solitons are discussed graphically. Results might be helpful for understanding the propagation of the shallow water wave.

18-gauge needle cap as adjunct to prevent kinking of endotracheal tube.

PubMed

Chan, Fuan Chiang; Kawamoto, Henry K; Bradley, James P

2012-11-01

A self-retaining Dingman mouth retractor is widely used to keep the mouth open during cleft palate and intraoral surgery. The airway is at risk of being crushed or occluded as the gag (tongue plate) of the Dingman mouth retractor is being pushed against the endotracheal tube.Kinking of the endotracheal tube between the teeth and Dingman mouth retractor has been reported even with the oral Ring-Adair-Elwyn or flexometallic or armored endotracheal tubes. To minimize kinking of the endotracheal tube and its consequent complications, we routinely insert an 18-gauge needle cap at the potential space between the teeth and the tongue plate (gag) of the Dingman mouth retractor, which is situated lateral to the endotracheal tube. In our experience of approximately 5000 intraoral cases using a Dingman mouth retractor and 18-gauge needle cap, we have not had any tooth avulsion or aspiration of the 18-gauge foreign body while maintaining a consistent and secured airway during cleft palate and intraoral surgery.

Pyrolysis of Helical Coordination Polymers for Metal-Sulfide-Based Helices with Broadband Chiroptical Activity.

PubMed

Hirai, Kenji; Yeom, Bongjun; Sada, Kazuki

2017-06-27

Fabrication of chiroptical materials with broadband response in the visible light region is vital to fully realize their potential applications. One way to achieve broadband chiroptical activity is to fabricate chiral nanostructures from materials that exhibit broadband absorption in the visible light region. However, the compounds used for chiroptical materials have predominantly been limited to materials with narrowband spectral response. Here, we synthesize Ag 2 S-based nanohelices derived from helical coordination polymers. The right- and left-handed coordination helices used as precursors are prepared from l- and d-glutathione with Ag + and a small amount of Cu 2+ . The pyrolysis of the coordination helices yields right- and left-handed helices of Cu 0.12 Ag 1.94 S/C, which exhibit chiroptical activity spanning the entire visible light region. Finite element method simulations substantiate that the broadband chiroptical activity is attributed to synergistic broadband light absorption and light scattering. Furthermore, another series of Cu 0.10 Ag 1.90 S/C nanohelices are synthesized by choosing the l- or d-Glu-Cys as starting materials. The pitch length of nanohelicies is controlled by changing the peptides, which alters their chiroptical properties. The pyrolysis of coordination helices enables one to fabricate helical Ag 2 S-based materials that enable broadband chiroptical activity but have not been explored owing to the lack of synthetic routes.

Chiral self-assembly of helical particles.

PubMed

Kolli, Hima Bindu; Cinacchi, Giorgio; Ferrarini, Alberta; Giacometti, Achille

2016-01-01

The shape of the building blocks plays a crucial role in directing self-assembly towards desired architectures. Out of the many different shapes, the helix has a unique position. Helical structures are ubiquitous in nature and a helical shape is exhibited by the most important biopolymers like polynucleotides, polypeptides and polysaccharides as well as by cellular organelles like flagella. Helical particles can self-assemble into chiral superstructures, which may have a variety of applications, e.g. as photonic (meta)materials. However, a clear and definite understanding of these structures has not been entirely achieved yet. We have recently undertaken an extensive investigation on the phase behaviour of hard helical particles, using numerical simulations and classical density functional theory. Here we present a detailed study of the phase diagram of hard helices as a function of their morphology. This includes a variety of liquid-crystal phases, with different degrees of orientational and positional ordering. We show how, by tuning the helix parameters, it is possible to control the organization of the system. Starting from slender helices, whose phase behaviour is similar to that of rodlike particles, an increase in curliness leads to the onset of azimuthal correlations between the particles and the formation of phases specific to helices. These phases feature a new kind of screw order, of which there is experimental evidence in colloidal suspensions of helical flagella.

Processing and plating helical metallic coils

NASA Technical Reports Server (NTRS)

1972-01-01

The results of research efforts to develop an optimized nickel cobalt coating suitable as a recording medium are outlined. The coating is to be used directly on a BeCu helical coil substrate of a helical coil NASA recorder. Specifically, efforts were made to: optimize the coating thickness; establish processes and techniques adaptable for the production of finalized plated helical coils; design and fabricate the equipment required for production and testing of the coils; and deliver finalized helical coils to NASA.

The crystal structure of the calcium-bound con-G[Q6A] peptide reveals a novel metal-dependent helical trimer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cnudde, Sara E.; Prorok, Mary; Jia, Xaofei

2012-02-15

The ability to form and control both secondary structure and oligomerization in short peptides has proven to be challenging owing to the structural instability of such peptides. The conantokin peptides are a family of {gamma}-carboxyglutamic acid containing peptides produced in the venoms of predatory sea snails of the Conus family. They are examples of short peptides that form stable helical structures, especially in the presence of divalent cations. Both monomeric and dimeric conantokin peptides have been identified and represent a new mechanism of helix association, 'the metallozipper motif' that is devoid of a hydrophobic interface between monomers. In the presentmore » study, a parallel/antiparallel three-helix bundle was identified and its crystal structure determined at high resolution. The three helices are almost perfectly parallel and represent a novel helix-helix association. The trimer interface is dominated by metal chelation between the three helices, and contains no interfacial hydrophobic interactions. It is now possible to produce stable monomeric, dimeric, or trimeric metallozippers depending on the peptide sequence and metal ion. Such structures have important applications in protein design.« less

Successive phase transitions and kink solutions in Φ⁸, Φ¹⁰, and Φ¹² field theories

DOE PAGES

Khare, Avinash; Christov, Ivan C.; Saxena, Avadh

2014-08-27

We obtain exact solutions for kinks in Φ⁸, Φ¹⁰, and Φ¹² field theories with degenerate minima, which can describe a second-order phase transition followed by a first-order one, a succession of two first-order phase transitions and a second-order phase transition followed by two first-order phase transitions, respectively. Such phase transitions are known to occur in ferroelastic and ferroelectric crystals and in meson physics. In particular, we find that the higher-order field theories have kink solutions with algebraically-decaying tails and also asymmetric cases with mixed exponential-algebraic tail decay, unlike the lower-order Φ⁴ and Φ⁶ theories. Additionally, we construct distinct kinks withmore » equal energies in all three field theories considered, and we show the co-existence of up to three distinct kinks (for a Φ¹² potential with six degenerate minima). We also summarize phonon dispersion relations for these systems, showing that the higher-order field theories have specific cases in which only nonlinear phonons are allowed. For the Φ¹⁰ field theory, which is a quasi-exactly solvable (QES) model akin to Φ⁶, we are also able to obtain three analytical solutions for the classical free energy as well as the probability distribution function in the thermodynamic limit.« less

The effect of surfactants on path instability of a rising bubble

NASA Astrophysics Data System (ADS)

Tagawa, Yoshiyuki; Takagi, Shu; Matsumoto, Yoichiro

2013-11-01

We experimentally investigate the surfactant effect on path instability of an air bubble rising in quiescent water. An addition of surfactant varies the gas-water boundary condition from zero shear stress to non-zero shear stress. We report three main findings: firstly, while the drag force acting on the bubble increases with the surfactant concentration as expected, the lift force shows a non-monotonic behavior; secondly, the transient trajectory starting from helical to zigzag is observed, which has never been reported in the case of purified water; lastly, a bubble with the intermediate slip conditions between free-slip and no-slip show a helical motion for a broad range of the Reynolds number. Aforementioned results are rationalized by considering the adsorption-desorption kinetics of the surfactants on gas-water interface and the wake dynamics. Y.T. thanks for financial support from Grant-in-Aid for JSPS Fellows (20-10701). We also thank for Grant-in-Aid for Scientific Research (B) (21360079).

Growth from Solutions: Kink dynamics, Stoichiometry, Face Kinetics and stability in turbulent flow

NASA Technical Reports Server (NTRS)

Chernov, A. A.; DeYoreo, J. J.; Rashkovich, L. N.; Vekilov, P. G.

2005-01-01

1. Kink dynamics. The first segment of a polygomized dislocation spiral step measured by AFM demonstrates up to 60% scattering in the critical length l*- the length when the segment starts to propagate. On orthorhombic lysozyme, this length is shorter than that the observed interkink distance. Step energy from the critical segment length based on the Gibbs-Thomson law (GTL), l* = 20(omega)alpha/(Delta)mu is several times larger than the energy from 2D nucleation rate. Here o is tine building block specific voiume, a is the step riser specific free energy, Delta(mu) is the crystallization driving force. These new data support our earlier assumption that the classical Frenkel, Burton -Cabrera-Frank concept of the abundant kink supply by fluctuations is not applicable for strongly polygonized steps. Step rate measurements on brushite confirms that statement. This is the1D nucleation of kinks that control step propagation. The GTL is valid only if l* kink that has diffusivity Dk and average growth velocity vk. This is equivalent to supersaturations sigma less than approx. alpha/2l*, where alpha is the building block size. For lysozyme, sigma much less than (1%). Conventionally used interstep distance generated by screw dislocation, 19(omega)alpha/Delta(mu) should be replaced by the very different real one, approx.4l*. 2. Stoichiometry. Kink, and thus step and face rates of a non-Kossel complex molecular monocomponent or any binary, AB, lattice was found theoretically to be proportional to 1/(zeta(sup 1/2) + zeta(sup - 1/2)), where zeta = [B]/[A] is the stoichiometry ratio in solution. The velocities reach maxima at zeta = 1. AFM studies of step rates on CaOxalate monohydrate (kidney stones) from aqueous solution was found to obey the law mentioned above. Generalization for more complex lattice will be discussed. 3. Turbulence. In agreement with theory, high precision in-situ laser interferometry of the (101) KDP crystal face shows step

Connections between centrifugal, stratorotational, and radiative instabilities in viscous Taylor-Couette flow

NASA Astrophysics Data System (ADS)

Leclercq, Colin; Nguyen, Florian; Kerswell, Rich R.

2016-10-01

The "Rayleigh line" μ =η2 , where μ =Ωo/Ωi and η =ri/ro are respectively the rotation and radius ratios between inner (subscript i ) and outer (subscript o ) cylinders, is regarded as marking the limit of centrifugal instability (CI) in unstratified inviscid Taylor-Couette flow, for both axisymmetric and nonaxisymmetric modes. Nonaxisymmetric stratorotational instability (SRI) is known to set in for anticyclonic rotation ratios beyond that line, i.e., η2<μ <1 for axially stably stratified Taylor-Couette flow, but the competition between CI and SRI in the range μ <η2 has not yet been addressed. In this paper, we establish continuous connections between the two instabilities at finite Reynolds number Re, as previously suggested by Le Bars and Le Gal [Phys. Rev. Lett. 99, 064502 (2007), 10.1103/PhysRevLett.99.064502], making them indistinguishable at onset. Both instabilities are also continuously connected to the radiative instability at finite Re. These results demonstrate the complex impact viscosity has on the linear stability properties of this flow. Several other qualitative differences with inviscid theory were found, among which are the instability of a nonaxisymmetric mode localized at the outer cylinder without stratification and the instability of a mode propagating against the inner cylinder rotation with stratification. The combination of viscosity and stratification can also lead to a "collision" between (axisymmetric) Taylor vortex branches, causing the axisymmetric oscillatory state already observed in past experiments. Perhaps more surprising is the instability of a centrifugal-like helical mode beyond the Rayleigh line, caused by the joint effects of stratification and viscosity. The threshold μ =η2 seems to remain, however, an impassable instability limit for axisymmetric modes, regardless of stratification, viscosity, and even disturbance amplitude.

High-latitude Pi2 pulsations associated with kink-like neutral sheet oscillations

NASA Astrophysics Data System (ADS)

Wang, G. Q.; Volwerk, M.; Zhang, T. L.; Schmid, D.; Yoshikawa, A.

2017-03-01

A kink-like neutral sheet oscillation event observed by Cluster between 1436 and 1445 UT on 15 October 2004 has been investigated. The oscillations with periods between 40 and 60 s, observed at (-13.1, 8.7, -0.5) RE, are dominant in BX and BY. And they propagate mainly duskward with a velocity of (86, 147, 46) km/s. Their periods and velocity can be explained by the magnetic double-gradient instability. These oscillations are accompanied by strong field-aligned currents (FACs), which prefer to occur near the strongly tilted current sheet, and local maximum FAC tends to occur near the neutral sheet. The FACs show one-to-one correlated with a high-latitude Pi2 pulsation event recorded by KTN and TIK stations with a delay time of 60 and 90 s, respectively. Both the Pi2 and oscillations propagate westward with a comparative conjunctive speed. These findings suggest a strong relation between the FACs and Pi2, and we infer that the Pi2 is caused by the FACs. The periods of the FACs are modulated by the oscillations but not exactly equal, which is one possible reason that the period of the Pi2 caused by the FACs could be different from the oscillations. We speculate that a current circuit between the plasma sheet and ionosphere can be formed during strongly tilted current sheet, and successive tilted current sheet could generate quasiperiodic multiple FAC systems, which can generate high-latitude Pi2 pulsations and control their periods.

Autonomously folded α-helical lockers promote RNAi*

NASA Astrophysics Data System (ADS)

Guyader, Christian P. E.; Lamarre, Baptiste; de Santis, Emiliana; Noble, James E.; Slater, Nigel K.; Ryadnov, Maxim G.

2016-10-01

RNAi is an indispensable research tool with a substantial therapeutic potential. However, the complete transition of the approach to an applied capability remains hampered due to poorly understood relationships between siRNA delivery and gene suppression. Here we propose that interfacial tertiary contacts between α-helices can regulate siRNA cytoplasmic delivery and RNAi. We introduce a rationale of helical amphipathic lockers that differentiates autonomously folded helices, which promote gene silencing, from helices folded with siRNA, which do not. Each of the helical designs can deliver siRNA into cells via energy-dependent endocytosis, while only autonomously folded helices with pre-locked hydrophobic interfaces were able to promote statistically appreciable gene silencing. We propose that it is the amphipathic locking of interfacing helices prior to binding to siRNA that enables RNAi. The rationale offers structurally balanced amphipathic scaffolds to advance the exploitation of functional RNAi.

Autonomously folded α-helical lockers promote RNAi*

PubMed Central

Guyader, Christian P. E.; Lamarre, Baptiste; De Santis, Emiliana; Noble, James E.; Slater, Nigel K.; Ryadnov, Maxim G.

2016-01-01

RNAi is an indispensable research tool with a substantial therapeutic potential. However, the complete transition of the approach to an applied capability remains hampered due to poorly understood relationships between siRNA delivery and gene suppression. Here we propose that interfacial tertiary contacts between α-helices can regulate siRNA cytoplasmic delivery and RNAi. We introduce a rationale of helical amphipathic lockers that differentiates autonomously folded helices, which promote gene silencing, from helices folded with siRNA, which do not. Each of the helical designs can deliver siRNA into cells via energy-dependent endocytosis, while only autonomously folded helices with pre-locked hydrophobic interfaces were able to promote statistically appreciable gene silencing. We propose that it is the amphipathic locking of interfacing helices prior to binding to siRNA that enables RNAi. The rationale offers structurally balanced amphipathic scaffolds to advance the exploitation of functional RNAi. PMID:27721465

Autonomously folded α-helical lockers promote RNAi.

PubMed

Guyader, Christian P E; Lamarre, Baptiste; De Santis, Emiliana; Noble, James E; Slater, Nigel K; Ryadnov, Maxim G

2016-10-10

RNAi is an indispensable research tool with a substantial therapeutic potential. However, the complete transition of the approach to an applied capability remains hampered due to poorly understood relationships between siRNA delivery and gene suppression. Here we propose that interfacial tertiary contacts between α-helices can regulate siRNA cytoplasmic delivery and RNAi. We introduce a rationale of helical amphipathic lockers that differentiates autonomously folded helices, which promote gene silencing, from helices folded with siRNA, which do not. Each of the helical designs can deliver siRNA into cells via energy-dependent endocytosis, while only autonomously folded helices with pre-locked hydrophobic interfaces were able to promote statistically appreciable gene silencing. We propose that it is the amphipathic locking of interfacing helices prior to binding to siRNA that enables RNAi. The rationale offers structurally balanced amphipathic scaffolds to advance the exploitation of functional RNAi.

Kink-bands: Shock deformation of biotite resulting from a nuclear explosion

USGS Publications Warehouse

Cummings, D.

1965-01-01

Microscopic examination of granodiorite samples from the shock region around a nuclear explosion reveals sharply folded lens-shaped zones (kink-bands) in the mineral biotite. Fifty percent of these zones are oriented approximately 90?? to the direction of shock-wave propagation, but other zones are symmetrically concentrated at shear angles of 50?? and 70?? to the direction of shock-wave propagation.

Helicity within the vortex filament model.

PubMed

Hänninen, R; Hietala, N; Salman, H

2016-11-24

Kinetic helicity is one of the invariants of the Euler equations that is associated with the topology of vortex lines within the fluid. In superfluids, the vorticity is concentrated along vortex filaments. In this setting, helicity would be expected to acquire its simplest form. However, the lack of a core structure for vortex filaments appears to result in a helicity that does not retain its key attribute as a quadratic invariant. By defining a spanwise vector to the vortex through the use of a Seifert framing, we are able to introduce twist and henceforth recover the key properties of helicity. We present several examples for calculating internal twist to illustrate why the centreline helicity alone will lead to ambiguous results if a twist contribution is not introduced. Our choice of the spanwise vector can be expressed in terms of the tangential component of velocity along the filament. Since the tangential velocity does not alter the configuration of the vortex at later times, we are able to recover a similar equation for the internal twist angle to that of classical vortex tubes. Our results allow us to explain how a quasi-classical limit of helicity emerges from helicity considerations for individual superfluid vortex filaments.

Helicity within the vortex filament model

PubMed Central

Hänninen, R.; Hietala, N.; Salman, H.

2016-01-01

Kinetic helicity is one of the invariants of the Euler equations that is associated with the topology of vortex lines within the fluid. In superfluids, the vorticity is concentrated along vortex filaments. In this setting, helicity would be expected to acquire its simplest form. However, the lack of a core structure for vortex filaments appears to result in a helicity that does not retain its key attribute as a quadratic invariant. By defining a spanwise vector to the vortex through the use of a Seifert framing, we are able to introduce twist and henceforth recover the key properties of helicity. We present several examples for calculating internal twist to illustrate why the centreline helicity alone will lead to ambiguous results if a twist contribution is not introduced. Our choice of the spanwise vector can be expressed in terms of the tangential component of velocity along the filament. Since the tangential velocity does not alter the configuration of the vortex at later times, we are able to recover a similar equation for the internal twist angle to that of classical vortex tubes. Our results allow us to explain how a quasi-classical limit of helicity emerges from helicity considerations for individual superfluid vortex filaments. PMID:27883029

Flow through triple helical microchannel

NASA Astrophysics Data System (ADS)

Rajbanshi, Pravat; Ghatak, Animangsu

2018-02-01

Flow through helical tubes and channels have been examined in different contexts, for facilitating heat and mass transfer at low Reynolds number flow, for generating plug flow to minimize reactor volume for many reactions. The curvature and torsion of the helices have been shown to engender secondary flow in addition to the primary axial flow, which enhances passive in-plane mixing between different fluid streams. Most of these studies, however, involve a single spiral with circular cross-section, which in essence is symmetric. It is not known, however, how the coupled effect of asymmetry of cross-section and the curvature and torsion of channel would affect the flow profile inside such tubes or channels. In this context, we have presented here the analysis of fluid flow at low Reynolds number inside a novel triple helical channel that consists of three helical flow paths joined along their contour length forming a single channel. We have carried out both microparticle image velocimetry (micro-PIV) and 3D simulation in FLUENT of flow of a Newtonian fluid through such channels. Our analysis shows that whereas in conventional single helices, the secondary flow is characterized by two counter-rotating vortices, in the case of triple helical channels, number of such vortices increases with the helix angle. Such flow profile is expected to enhance possibility of mixing between the liquids, yet diminish the pressure drop.

The Caltech experimental investigation of fast 3D non-equilbrium dynamics: an overview

NASA Astrophysics Data System (ADS)

Bellan, Paul; Shikama, Taiichi; Chai, Kilbyoung; Ha, Bao; Chaplin, Vernon; Kendall, Mark; Moser, Auna; Stenson, Eve; Tobin, Zachary; Zhai, Xiang

2012-10-01

The formation and dynamics of writhing, plasma-filled, twisted open magnetic flux tubes is being investigated using pulsed-power laboratory experiments. This work is relevant to solar corona loops, astrophysical jets, spheromak formation, and open field lines in tokamaks and RFP's. MHD forces have been observed to drive fast axial plasma flows into the flux tube from the boundary it intercepts. These flows fill the flux tube with plasma while simultaneously injecting linked frozen-in azimuthal flux; helicity injection is thus associated with mass injection. Recent results include observation of a secondary instability (Rayleigh-Taylor driven by the effective gravity of an exponentially growing kink mode), color-coded plasmas manifesting bidirectional axial flows in a geometry similar to a solar corona loop, and spectroscopic measurements of the internal vector magnetic field. Experiments underway include investigating how an external magnetic field straps down a solar loop, investigation of the details of the Rayleigh-Taylor instability, development of a fast EUV movie camera, increasing the jet velocity, excitation of Alfven waves, and investigating 3D magnetic reconnection.

Laboratory Studies of the Nonlinear Interactions of Kink-Unstable Flux Ropes and Shear Alfvén Waves

NASA Astrophysics Data System (ADS)

Vincena, S. T.; Tripathi, S.; Gekelman, W. N.; DeHaas, T.; Pribyl, P.

2017-12-01

Magnetic flux ropes and shear Alfvén waves occur simultaneously in plasmas ranging from solar prominences, to the solar wind, to planetary magnetospheres. If the flux ropes evolve to become unstable to the kink mode, interactions between the kink oscillations and the shear waves can arise, and may even lead to nonlinear phenomena. Experiments aimed at elucidating such interactions are performed in the upgraded Large Plasma Device at UCLA. Flux ropes are generated using a 20 cm x 20 cm LaB6 cathode-anode discharge (with L = 18 m and β ˜ 0.1.) The ropes are embedded in a larger, otherwise current-free, cylindrical (r = 30cm) ambient plasma produced by a second cathode. Shear Alfvén waves are launched using externally fed antennas having three separate polarizations (azimuthal mode numbers.) The counter-propagating, kink-unstable oscillations and driven shear waves are observed to nonlinearly generate sidebands about the higher, shear wave frequency (evident in power spectra) via three-wave coupling. This is demonstrated though bi-coherence calculations and k-matching. With a fixed kink-mode polarization, a total of six daughter wave patterns are presented. Energy flow is shown to proceed from larger to smaller perpendicular wavelengths. Future work will focus on increasing the plasma beta and wave amplitudes in the quest to observe an evolution to a turbulent state. Work is performed at the US Basic Plasma Science Facility, which is supported by the US Department of Energy and the National Science Foundation.

Stability of short-axial-wavelength internal kink modes of an anisotropic plasma

NASA Astrophysics Data System (ADS)

Faghihi, M.; Scheffel, J.

1987-12-01

The double adiabatic equations are used to study the stability of a cylindrical Z-pinch with respect to small axial wavelength, internal kink (m ≥ 1) modes. It is found that marginally (ideally) unstable, isotropic equilibria are stabilized. Also, constant-current-density equilibria can be stabilized for P > P and large β

A unified convention for biological assemblies with helical symmetry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsai, Chung-Jung, E-mail: tsaic@mail.nih.gov; Nussinov, Ruth; Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978

A new representation of helical structure by four parameters, [n{sub 1}, n{sub 2}, twist, rise], is able to generate an entire helical construct from asymmetric units, including cases of helical assembly with a seam. Assemblies with helical symmetry can be conveniently formulated in many distinct ways. Here, a new convention is presented which unifies the two most commonly used helical systems for generating helical assemblies from asymmetric units determined by X-ray fibre diffraction and EM imaging. A helical assembly is viewed as being composed of identical repetitive units in a one- or two-dimensional lattice, named 1-D and 2-D helical systems,more » respectively. The unification suggests that a new helical description with only four parameters [n{sub 1}, n{sub 2}, twist, rise], which is called the augmented 1-D helical system, can generate the complete set of helical arrangements, including coverage of helical discontinuities (seams). A unified four-parameter characterization implies similar parameters for similar assemblies, can eliminate errors in reproducing structures of helical assemblies and facilitates the generation of polymorphic ensembles from helical atomic models or EM density maps. Further, guidelines are provided for such a unique description that reflects the structural signature of an assembly, as well as rules for manipulating the helical symmetry presentation.« less

Helicity-dependent single-walled carbon nanotube alignment on graphite for helical angle and handedness recognition

PubMed Central

Chen, Yabin; Shen, Ziyong; Xu, Ziwei; Hu, Yue; Xu, Haitao; Wang, Sheng; Guo, Xiaolei; Zhang, Yanfeng; Peng, Lianmao; Ding, Feng; Liu, Zhongfan; Zhang, Jin

2013-01-01

Aligned single-walled carbon nanotube arrays provide a great potential for the carbon-based nanodevices and circuit integration. Aligning single-walled carbon nanotubes with selected helicities and identifying their helical structures remain a daunting issue. The widely used gas-directed and surface-directed growth modes generally suffer the drawbacks of mixed and unknown helicities of the aligned single-walled carbon nanotubes. Here we develop a rational approach to anchor the single-walled carbon nanotubes on graphite surfaces, on which the orientation of each single-walled carbon nanotube sensitively depends on its helical angle and handedness. This approach can be exploited to conveniently measure both the helical angle and handedness of the single-walled carbon nanotube simultaneously at a low cost. In addition, by combining with the resonant Raman spectroscopy, the (n,m) index of anchored single-walled carbon nanotube can be further determined from the (d,θ) plot, and the assigned (n,m) values by this approach are validated by both the electronic transition energy Eii measurement and nanodevice application. PMID:23892334

Segregation of helicity in inertial wave packets

NASA Astrophysics Data System (ADS)

Ranjan, A.

2017-03-01

Inertial waves are known to exist in the Earth's rapidly rotating outer core and could be important for the dynamo generation. It is well known that a monochromatic inertial plane wave traveling parallel to the rotation axis (along positive z ) has negative helicity while the wave traveling antiparallel (negative z ) has positive helicity. Such a helicity segregation, north and south of the equator, is necessary for the α2-dynamo model based on inertial waves [Davidson, Geophys. J. Int. 198, 1832 (2014), 10.1093/gji/ggu220] to work. The core is likely to contain a myriad of inertial waves of different wave numbers and frequencies. In this study, we investigate whether this characteristic of helicity segregation also holds for an inertial wave packet comprising waves with the same sign of Cg ,z, the z component of group velocity. We first derive the polarization relations for inertial waves and subsequently derive the resultant helicity in wave packets forming as a result of superposition of two or more waves. We find that the helicity segregation does hold for an inertial wave packet unless the wave numbers of the constituent waves are widely separated. In the latter case, regions of opposite color helicity do appear, but the mean helicity retains the expected sign. An illustration of this observation is provided by (a) calculating the resultant helicity for a wave packet formed by superposition of four upward-propagating inertial waves with different wave vectors and (b) conducting the direct numerical simulation of a Gaussian eddy under rapid rotation. Last, the possible effects of other forces such as the viscous dissipation, the Lorentz force, buoyancy stratification, and nonlinearity on helicity are investigated and discussed. The helical structure of the wave packet is likely to remain unaffected by dissipation or the magnetic field, but can be modified by the presence of linearly stable stratification and nonlinearity.

Helical screw viscometer

DOEpatents

Aubert, J.H.; Chapman, R.N.; Kraynik, A.M.

1983-06-30

A helical screw viscometer for the measurement of the viscosity of Newtonian and non-Newtonian fluids comprising an elongated cylindrical container closed by end caps defining a circular cylindrical cavity within the container, a cylindrical rotor member having a helical screw or ribbon flight carried by the outer periphery thereof rotatably carried within the cavity whereby the fluid to be measured is confined in the cavity filling the space between the rotor and the container wall. The rotor member is supported by axle members journaled in the end caps, one axle extending through one end cap and connectable to a drive source. A pair of longitudinally spaced ports are provided through the wall of the container in communication with the cavity and a differential pressure meter is connected between the ports for measuring the pressure drop caused by the rotation of the helical screw rotor acting on the confined fluid for computing viscosity.

Helical plasma thruster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beklemishev, A. D., E-mail: bekl@bk.ru

2015-10-15

A new scheme of plasma thruster is proposed. It is based on axial acceleration of rotating magnetized plasmas in magnetic field with helical corrugation. The idea is that the propellant ionization zone can be placed into the local magnetic well, so that initially the ions are trapped. The E × B rotation is provided by an applied radial electric field that makes the setup similar to a magnetron discharge. Then, from the rotating plasma viewpoint, the magnetic wells of the helically corrugated field look like axially moving mirror traps. Specific shaping of the corrugation can allow continuous acceleration of trapped plasma ionsmore » along the magnetic field by diamagnetic forces. The accelerated propellant is expelled through the expanding field of magnetic nozzle. By features of the acceleration principle, the helical plasma thruster may operate at high energy densities but requires a rather high axial magnetic field, which places it in the same class as the VASIMR{sup ®} rocket engine.« less

Detection of the Second Harmonic of Decay-less Kink Oscillations in the Solar Corona

NASA Astrophysics Data System (ADS)

Duckenfield, T.; Anfinogentov, S. A.; Pascoe, D. J.; Nakariakov, V. M.

2018-02-01

EUV observations of a multi-thermal coronal loop, taken by the Atmospheric Imaging Assembly of the Solar Dynamics Observatory, which exhibits decay-less kink oscillations are presented. The data cube of the quiet-Sun coronal loop was passed through a motion magnification algorithm to accentuate transverse oscillations. Time–distance maps are made from multiple slits evenly spaced along the loop axis and oriented orthogonal to the loop axis. Displacements of the intensity peak are tracked to generate time series of the loop displacement. Fourier analysis on the time series shows the presence of two periods within the loop: {P}1={10.3}-1.7+1.5 minutes and {P}2={7.4}-1.3+1.1 minutes. The longer period component is greatest in amplitude at the apex and remains in phase throughout the loop length. The shorter period component is strongest further down from the apex on both legs and displays an anti-phase behavior between the two loop legs. We interpret these results as the coexistence of the fundamental and second harmonics of the standing kink mode within the loop in the decay-less oscillation regime. An illustration of seismological application using the ratio P 1/2P 2 ∼ 0.7 to estimate the density scale height is presented. The existence of multiple harmonics has implications for understanding the driving and damping mechanisms for decay-less oscillations and adds credence to their interpretation as standing kink mode oscillations.

A Combined Study of Photospheric Magnetic and Current Helicities and Subsurface Kinetic Helicities of Solar Active Regions during 2006-2013

NASA Astrophysics Data System (ADS)

Seligman, D.; Petrie, G. J. D.; Komm, R.

2014-11-01

We compare the average photospheric current helicity Hc , photospheric twist parameter α (a well-known proxy for the full relative magnetic helicity), and subsurface kinetic helicity Hk for 194 active regions observed between 2006-2013. We use 2440 Hinode photospheric vector magnetograms, and the corresponding subsurface fluid velocity data derived from GONG (2006-2012) and Helioseismic and Magnetic Imager (2010-2013) dopplergrams. We find a significant hemispheric bias in all three parameters. The subsurface kinetic helicity is preferentially positive in the southern hemisphere and negative in the northern hemisphere. The photospheric current helicity and the α parameter have the same bias for strong fields (|B| > 1000 G) and no significant bias for weak fields (100 G <|B| < 500 G). We find no significant region-by-region correlation between the subsurface kinetic helicity and either the strong-field current helicity or α. Subsurface fluid motions of a given handedness correspond to photospheric helicities of both signs in approximately equal numbers. However, common variations appear in annual averages of these quantities over all regions. Furthermore, in a subset of 77 regions, we find significant correlations between the temporal profiles of the subsurface and photospheric helicities. In these cases, the sign of the linear correlation coefficient matches the sign relationship between the helicities, indicating that the photospheric magnetic field twist is sensitive to the twisting motions below the surface.

Helical vortices: Quasiequilibrium states and their time evolution

NASA Astrophysics Data System (ADS)

Selçuk, Can; Delbende, Ivan; Rossi, Maurice

2017-08-01

The time evolution of a viscous helical vortex is investigated by direct numerical simulations of the Navier-Stokes equations where helical symmetry is enforced. Using conservation laws in the framework of helical symmetry, we elaborate an initial condition consisting in a finite core vortex, the time evolution of which leads to a generic quasiequilibrium state independent of the initial core size. Numerical results at different helical pitch values provide an accurate characterization in time for such helical states, for which specific techniques have been introduced: helix radius, angular velocity, stream function-velocity-vorticity relationships, and core properties (size, self-similarity, and ellipticity). Viscosity is shown to be at the origin of a small helical velocity component, which we relate to the helical vorticity component. Finally, changes in time of the flow topology are studied using the helical stream function and three-dimensional Lagrangian orbits.

Evaluation of helicity generation in the tropical storm Gonu

NASA Astrophysics Data System (ADS)

Farahani, Majid M.; Khansalari, Sakineh; Azadi, Majid

2017-06-01

Helicity is a valuable dynamical concept for the study of rotating flows. Consequently helicity flux, indicative of the source or sink of helicity, owns comparable importance. In this study, while reviewing the existing methods, a mathematical relation between helicity and helicity-flux is introduced, discussed and examined. The computed values of helicity and helicity fluxes in an actual case, using the classical and this proposed method are compared. The down-stream helicity flux including sources and sinks of helicity is considered for the tropical storm Gonu that occurred over the coasts of Oman and Iran on June 2-7, 2007. Results show that the buoyancy, through the upper troposphere down to a height within boundary layer, is the main source in producing helicity, and surface friction from earth surface up to a height within boundary layer, is the main dissipating element of helicity. The dominance of buoyancy forcing over the dissipative friction forcing results in generation of vortex or enhancement of it after bouncing the land. Furthermore, the increase (decrease) of helicity results in an increase (decrease) in the height of the level in which maximum helicity flux occurs. It is suggested that the maximum helicity flux occurs at the top of the turbulent boundary layer, so that the height of boundary layer could be obtained.

Ideal kink and neoclassical tearing mode identification in DIII-D with ECE

NASA Astrophysics Data System (ADS)

Zhao, Hailin; Austin, Max; Brookman, Michale; Rowan, William; La Haye, R. J.

2017-10-01

Detection of neoclassical tearing modes (NTMs), which can degrade plasma confinement or cause disruptions, is important in tokamaks. We have developed a code to cross-correlate ECE/magnetics data to get the amplitude and phase profiles of the electron temperature (Te) oscillation caused by the rotating magnetic island and/or a kink. It has been observed that the ΔTe amplitude on the two sides of the island center can be very different in some discharges. Also, a discrepancy often exists between the location of the rational q surface according to MSE-constrained EFIT and the location of island center according to ECE; this can be an issue for ECCD suppression of NTMs. We explore the possible causes of these two phenomena in terms of ECE location and calibration accuracy. By analyzing the Te fluctuation phase evolution after a large sawtooth crash which triggers an NTM, the presence of a kink-like mode before the onset of NTM can be discerned. Work supported by the US DOE under DE-FG02-97ER54415 and DE-FC02-04ER54698.

Four-stranded mini microtubules formed by Prosthecobacter BtubAB show dynamic instability.

PubMed

Deng, Xian; Fink, Gero; Bharat, Tanmay A M; He, Shaoda; Kureisaite-Ciziene, Danguole; Löwe, Jan

2017-07-18

Microtubules, the dynamic, yet stiff hollow tubes built from αβ-tubulin protein heterodimers, are thought to be present only in eukaryotic cells. Here, we report a 3.6-Å helical reconstruction electron cryomicroscopy structure of four-stranded mini microtubules formed by bacterial tubulin-like Prosthecobacter dejongeii BtubAB proteins. Despite their much smaller diameter, mini microtubules share many key structural features with eukaryotic microtubules, such as an M-loop, alternating subunits, and a seam that breaks overall helical symmetry. Using in vitro total internal reflection fluorescence microscopy, we show that bacterial mini microtubules treadmill and display dynamic instability, another hallmark of eukaryotic microtubules. The third protein in the btub gene cluster, BtubC, previously known as "bacterial kinesin light chain," binds along protofilaments every 8 nm, inhibits BtubAB mini microtubule catastrophe, and increases rescue. Our work reveals that some bacteria contain regulated and dynamic cytomotive microtubule systems that were once thought to be only useful in much larger and sophisticated eukaryotic cells.

Dynamics of zonal flows in helical systems.

PubMed

Sugama, H; Watanabe, T-H

2005-03-25

A theory for describing collisionless long-time behavior of zonal flows in helical systems is presented and its validity is verified by gyrokinetic-Vlasov simulation. It is shown that, under the influence of particles trapped in helical ripples, the response of zonal flows to a given source becomes weaker for lower radial wave numbers and deeper helical ripples while a high-level zonal-flow response, which is not affected by helical-ripple-trapped particles, can be maintained for a longer time by reducing their bounce-averaged radial drift velocity. This implies a possibility that helical configurations optimized for reducing neoclassical ripple transport can simultaneously enhance zonal flows which lower anomalous transport.

Building blocks for subleading helicity operators

DOE PAGES

Kolodrubetz, Daniel W.; Moult, Ian; Stewart, Iain W.

2016-05-24

On-shell helicity methods provide powerful tools for determining scattering amplitudes, which have a one-to-one correspondence with leading power helicity operators in the Soft-Collinear Effective Theory (SCET) away from singular regions of phase space. We show that helicity based operators are also useful for enumerating power suppressed SCET operators, which encode subleading amplitude information about singular limits. In particular, we present a complete set of scalar helicity building blocks that are valid for constructing operators at any order in the SCET power expansion. In conclusion, we also describe an interesting angular momentum selection rule that restricts how these building blocks canmore » be assembled.« less

A combined study of photospheric magnetic and current helicities and subsurface kinetic helicities of solar active regions during 2006-2013

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seligman, D.; Petrie, G. J. D.; Komm, R.

2014-11-10

We compare the average photospheric current helicity H{sub c} , photospheric twist parameter α (a well-known proxy for the full relative magnetic helicity), and subsurface kinetic helicity H{sub k} for 194 active regions observed between 2006-2013. We use 2440 Hinode photospheric vector magnetograms, and the corresponding subsurface fluid velocity data derived from GONG (2006-2012) and Helioseismic and Magnetic Imager (2010-2013) dopplergrams. We find a significant hemispheric bias in all three parameters. The subsurface kinetic helicity is preferentially positive in the southern hemisphere and negative in the northern hemisphere. The photospheric current helicity and the α parameter have the same biasmore » for strong fields (|B| > 1000 G) and no significant bias for weak fields (100 G <|B| < 500 G). We find no significant region-by-region correlation between the subsurface kinetic helicity and either the strong-field current helicity or α. Subsurface fluid motions of a given handedness correspond to photospheric helicities of both signs in approximately equal numbers. However, common variations appear in annual averages of these quantities over all regions. Furthermore, in a subset of 77 regions, we find significant correlations between the temporal profiles of the subsurface and photospheric helicities. In these cases, the sign of the linear correlation coefficient matches the sign relationship between the helicities, indicating that the photospheric magnetic field twist is sensitive to the twisting motions below the surface.« less

Studying the Transfer of Magnetic Helicity in Solar Active Regions with the Connectivity-based Helicity Flux Density Method

NASA Astrophysics Data System (ADS)

Dalmasse, K.; Pariat, É.; Valori, G.; Jing, J.; Démoulin, P.

2018-01-01

In the solar corona, magnetic helicity slowly and continuously accumulates in response to plasma flows tangential to the photosphere and magnetic flux emergence through it. Analyzing this transfer of magnetic helicity is key for identifying its role in the dynamics of active regions (ARs). The connectivity-based helicity flux density method was recently developed for studying the 2D and 3D transfer of magnetic helicity in ARs. The method takes into account the 3D nature of magnetic helicity by explicitly using knowledge of the magnetic field connectivity, which allows it to faithfully track the photospheric flux of magnetic helicity. Because the magnetic field is not measured in the solar corona, modeled 3D solutions obtained from force-free magnetic field extrapolations must be used to derive the magnetic connectivity. Different extrapolation methods can lead to markedly different 3D magnetic field connectivities, thus questioning the reliability of the connectivity-based approach in observational applications. We address these concerns by applying this method to the isolated and internally complex AR 11158 with different magnetic field extrapolation models. We show that the connectivity-based calculations are robust to different extrapolation methods, in particular with regard to identifying regions of opposite magnetic helicity flux. We conclude that the connectivity-based approach can be reliably used in observational analyses and is a promising tool for studying the transfer of magnetic helicity in ARs and relating it to their flaring activity.

Structure and interactions of biological helices

NASA Astrophysics Data System (ADS)

Kornyshev, Alexei A.; Lee, Dominic J.; Leikin, Sergey; Wynveen, Aaron

2007-07-01

Helices are essential building blocks of living organisms, be they molecular fragments of proteins ( α -helices), macromolecules (DNA and collagen), or multimolecular assemblies (microtubules and viruses). Their interactions are involved in packing of meters of genetic material within cells and phage heads, recognition of homologous genes in recombination and DNA repair, stability of tissues, and many other processes. Helical molecules form a variety of mesophases in vivo and in vitro. Recent structural studies, direct measurements of intermolecular forces, single-molecule manipulations, and other experiments have accumulated a wealth of information and revealed many puzzling physical phenomena. It is becoming increasingly clear that in many cases the physics of biological helices cannot be described by theories that treat them as simple, unstructured polyelectrolytes. The present article focuses on the most important and interesting aspects of the physics of structured macromolecules, highlighting various manifestations of the helical motif in their structure, elasticity, interactions with counterions, aggregation, and poly- and mesomorphic transitions.

DIRECT OBSERVATIONS OF TETHER-CUTTING RECONNECTION DURING A MAJOR SOLAR EVENT FROM 2014 FEBRUARY 24 TO 25

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Huadong; Zhang, Jun; Yang, Shuhong

2014-12-20

Using multi-wavelength data from the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory, we investigated two successive solar flares, a C5.1 confined flare and an X4.9 ejective flare with a halo coronal mass ejection, in NOAA active region 11990 from 2014 February 24 to 25. Before the confined flare onset, EUV brightening beneath the filament was detected. As the flare began, a twisted helical flux rope (FR) wrapping around the filament moved upward and then stopped, and in the meantime an obvious X-ray source below it was observed. Prior to the ejective X4.9 flare, some pre-existing loop structures inmore » the active region interacted with each other, which produced a brightening region beneath the filament. Meanwhile, a small flaring loop appeared below the interaction region and some new helical lines connecting the far ends of the loop structures were gradually formed and continually added into the former twisted FR. Then, due to the resulting imbalance between the magnetic pressure and tension, the new FR, together with the filament, erupted outward. Our observations coincide well with a tether-cutting model, suggesting that the two flares probably have the same triggering mechanism, i.e., tether-cutting reconnection. To our knowledge, this is the first direct observation of tether-cutting reconnection occurring between pre-existing loops in an active region. In the ejective flare case, the erupting filament exhibited an Ω-like kinked structure and underwent an exponential rise after a slow-rise phase, indicating that the kink instability might be also responsible for the eruption initiation.« less

Helicity multiplexed broadband metasurface holograms.

PubMed

Wen, Dandan; Yue, Fuyong; Li, Guixin; Zheng, Guoxing; Chan, Kinlong; Chen, Shumei; Chen, Ming; Li, King Fai; Wong, Polis Wing Han; Cheah, Kok Wai; Pun, Edwin Yue Bun; Zhang, Shuang; Chen, Xianzhong

2015-09-10

Metasurfaces are engineered interfaces that contain a thin layer of plasmonic or dielectric nanostructures capable of manipulating light in a desirable manner. Advances in metasurfaces have led to various practical applications ranging from lensing to holography. Metasurface holograms that can be switched by the polarization state of incident light have been demonstrated for achieving polarization multiplexed functionalities. However, practical application of these devices has been limited by their capability for achieving high efficiency and high image quality. Here we experimentally demonstrate a helicity multiplexed metasurface hologram with high efficiency and good image fidelity over a broad range of frequencies. The metasurface hologram features the combination of two sets of hologram patterns operating with opposite incident helicities. Two symmetrically distributed off-axis images are interchangeable by controlling the helicity of the input light. The demonstrated helicity multiplexed metasurface hologram with its high performance opens avenues for future applications with functionality switchable optical devices.

Helicity multiplexed broadband metasurface holograms

PubMed Central

Wen, Dandan; Yue, Fuyong; Li, Guixin; Zheng, Guoxing; Chan, Kinlong; Chen, Shumei; Chen, Ming; Li, King Fai; Wong, Polis Wing Han; Cheah, Kok Wai; Yue Bun Pun, Edwin; Zhang, Shuang; Chen, Xianzhong

2015-01-01

Metasurfaces are engineered interfaces that contain a thin layer of plasmonic or dielectric nanostructures capable of manipulating light in a desirable manner. Advances in metasurfaces have led to various practical applications ranging from lensing to holography. Metasurface holograms that can be switched by the polarization state of incident light have been demonstrated for achieving polarization multiplexed functionalities. However, practical application of these devices has been limited by their capability for achieving high efficiency and high image quality. Here we experimentally demonstrate a helicity multiplexed metasurface hologram with high efficiency and good image fidelity over a broad range of frequencies. The metasurface hologram features the combination of two sets of hologram patterns operating with opposite incident helicities. Two symmetrically distributed off-axis images are interchangeable by controlling the helicity of the input light. The demonstrated helicity multiplexed metasurface hologram with its high performance opens avenues for future applications with functionality switchable optical devices. PMID:26354497

Helicity in the atmospheric boundary layer

NASA Astrophysics Data System (ADS)

Kurgansky, Michael; Koprov, Boris; Koprov, Victor; Chkhetiani, Otto

2017-04-01

An overview is presented of recent direct field measurements at the Tsimlyansk Scientific Station of A.M. Obukhov Institute of Atmospheric Physics in Moscow of turbulent helicity (and potential vorticity) using four acoustic anemometers positioned, within the atmospheric surface-adjacent boundary layer, in the vertices of a rectangular tetrahedron, with an approximate 5 m distance between the anemometers and a 5.5 m elevation of the tetrahedron base above the ground surface (Koprov, Koprov, Kurgansky and Chkhetiani. Izvestiya, Atmospheric and Oceanic Physics, 2015, Vol.51, 565-575). The same ideology was applied in a later field experiment in Tsimlyansk with the tetrahedron's size of 0.7 m and variable elevation over the ground from 3.5 to 25 m. It is illustrated with examples of the statistical distribution of instantaneous (both positive and negative) turbulent helicity values. A theory is proposed that explains the measured mean turbulent helicity sign, including the sign of contribution to helicity from the horizontal and vertical velocity & vorticity components, respectively, and the sign of helicity buoyant production term. By considering a superposition of the classic Ekman spiral solution and a jet-like wind profile that mimics a shallow breeze circulation over a non-uniformly heated Earth surface, a possible explanation is provided, why the measured mean turbulent helicity sign is negative. The pronounced breeze circulation over the Tsimlyansk polygon which is located nearby the Tsimlyansk Reservoir was, indeed, observed during the measurements period. Whereas, essentially positive helicity is injected into the boundary layer from the free atmosphere in the Northern Hemisphere.

Helicity, geostrophic balance and mixing in rotating stratified turbulence: a multi-scale problem

NASA Astrophysics Data System (ADS)

Pouquet, A.; Marino, R.; Mininni, P.; Rorai, C.; Rosenberg, D. L.

2012-12-01

Helicity, geostrophic balance and mixing in rotating stratified turbulence: a multi-scale problem A. Pouquet, R. Marino, P. D. Mininni, C. Rorai & D. Rosenberg, NCAR Interactions between winds and waves have important roles in planetary and oceanic boundary layers, affecting momentum, heat and CO2 transport. Within the Abyssal Southern Ocean at Mid latitude, this may result in a mixed layer which is too shallow in climate models thereby affecting the overall evolution because of poor handling of wave breaking as in Kelvin-Helmoltz instabilities: gravity waves couple nonlinearly on slow time scales and undergo steepening through resonant interactions, or due to the presence of shear. In the oceans, sub-mesoscale frontogenesis and significant departure from quasi-geostrophy can be seen as turbulence intensifies. The ensuing anomalous vertical dispersion may not be simply modeled by a random walk, due to intermittent structures, wave propagation and to their interactions. Conversely, the energy and seeds required for such intermittent events to occur, say in the stable planetary boundary layer, may come from the wave field that is perturbed, or from winds and the effect of topography. Under the assumption of stationarity, weak nonlinearities, dissipation and forcing, one obtains large-scale geostrophic balance linking pressure gradient, gravity and Coriolis force. The role of helicity (velocity-vorticity correlations) has not received as much attention, outside the realm of astrophysics when considering the growth of large-scale magnetic fields. However, it is measured routinely in the atmosphere in order to gauge the likelihood of supercell convective storms to strengthen, and it may be a factor to consider in the formation of hurricanes. In this context, we examine the transition from a wave-dominated regime to an isotropic small-scale turbulent one in rotating flows with helical forcing. Using a direct numerical simulation (DNS) on a 3072^3 grid with Rossby and

Experimental Evidence for Magnetorotational Instability in a Taylor-Couette Flow under the Influence of a Helical Magnetic Field

NASA Astrophysics Data System (ADS)

Stefani, Frank; Gundrum, Thomas; Gerbeth, Gunter; Rüdiger, Günther; Schultz, Manfred; Szklarski, Jacek; Hollerbach, Rainer

2006-11-01

A recent Letter [R. Hollerbach and G. Rüdiger, Phys. Rev. Lett. 95, 124501 (2005)PRLTAO0031-900710.1103/PhysRevLett.95.124501] has shown that the threshold for the onset of the magnetorotational instability in a Taylor-Couette flow is dramatically reduced if both axial and azimuthal magnetic fields are imposed. In agreement with this prediction, we present results of a Taylor-Couette experiment with the liquid metal alloy GaInSn, showing evidence for the existence of the magnetorotational instability at Reynolds numbers of order 1000 and Hartmann numbers of order 10.

Self-assembly of a double-helical complex of sodium.

PubMed

Bell, T W; Jousselin, H

1994-02-03

Spontaneous self-organization of helical and multiple-helical molecular structures occurs on several levels in living organisms. Key examples are alpha-helical polypeptides, double-helical nucleic acids and helical protein structures, including F-actin, microtubules and the protein sheath of the tobacco mosaic virus. Although the self-assembly of double-helical transition-metal complexes bears some resemblance to the molecular organization of double-stranded DNA, selection between monohelical, double-helical and triple-helical structures is determined largely by the size and geometrical preference of the tightly bound metal. Here we present an example of double-helical assembly induced by the weaker and non-directional interactions of an alkali-metal ion with an organic ligand that is pre-organized into a coil. We have characterized the resulting complex by two-dimensional NMR and fast-atom-bombardment mass spectrometry. These results provide a step toward the creation of molecular tubes or ion channels consisting of intertwined coils.

Helical localized wave solutions of the scalar wave equation.

PubMed

Overfelt, P L

2001-08-01

A right-handed helical nonorthogonal coordinate system is used to determine helical localized wave solutions of the homogeneous scalar wave equation. Introducing the characteristic variables in the helical system, i.e., u = zeta - ct and v = zeta + ct, where zeta is the coordinate along the helical axis, we can use the bidirectional traveling plane wave representation and obtain sets of elementary bidirectional helical solutions to the wave equation. Not only are these sets bidirectional, i.e., based on a product of plane waves, but they may also be broken up into right-handed and left-handed solutions. The elementary helical solutions may in turn be used to create general superpositions, both Fourier and bidirectional, from which new solutions to the wave equation may be synthesized. These new solutions, based on the helical bidirectional superposition, are members of the class of localized waves. Examples of these new solutions are a helical fundamental Gaussian focus wave mode, a helical Bessel-Gauss pulse, and a helical acoustic directed energy pulse train. Some of these solutions have the interesting feature that their shape and localization properties depend not only on the wave number governing propagation along the longitudinal axis but also on the normalized helical pitch.

SHEET PLASMA DEVICE

DOEpatents

Henderson, O.A.

1962-07-17

An ion-electron plasma heating apparatus of the pinch tube class was developed wherein a plasma is formed by an intense arc discharge through a gas and is radially constricted by the magnetic field of the discharge. To avoid kink and interchange instabilities which can disrupt a conventional arc shortiy after it is formed, the apparatus is a pinch tube with a flat configuration for forming a sheet of plasma between two conductive plates disposed parallel and adjacent to the plasma sheet. Kink instabilities are suppressed by image currents induced in the conductive plates while the interchange instabilities are neutrally stable because of the flat plasma configuration wherein such instabilities may occur but do not dynamically increase in amplitude. (AEC)

Optimization of view weighting in tilted-plane-based reconstruction algorithms to minimize helical artifacts in multi-slice helical CT

NASA Astrophysics Data System (ADS)

Tang, Xiangyang

2003-05-01

In multi-slice helical CT, the single-tilted-plane-based reconstruction algorithm has been proposed to combat helical and cone beam artifacts by tilting a reconstruction plane to fit a helical source trajectory optimally. Furthermore, to improve the noise characteristics or dose efficiency of the single-tilted-plane-based reconstruction algorithm, the multi-tilted-plane-based reconstruction algorithm has been proposed, in which the reconstruction plane deviates from the pose globally optimized due to an extra rotation along the 3rd axis. As a result, the capability of suppressing helical and cone beam artifacts in the multi-tilted-plane-based reconstruction algorithm is compromised. An optomized tilted-plane-based reconstruction algorithm is proposed in this paper, in which a matched view weighting strategy is proposed to optimize the capability of suppressing helical and cone beam artifacts and noise characteristics. A helical body phantom is employed to quantitatively evaluate the imaging performance of the matched view weighting approach by tabulating artifact index and noise characteristics, showing that the matched view weighting improves both the helical artifact suppression and noise characteristics or dose efficiency significantly in comparison to the case in which non-matched view weighting is applied. Finally, it is believed that the matched view weighting approach is of practical importance in the development of multi-slive helical CT, because it maintains the computational structure of fan beam filtered backprojection and demands no extra computational services.

Faraday signature of magnetic helicity from reduced depolarization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brandenburg, Axel; Stepanov, Rodion

2014-05-10

Using one-dimensional models, we show that a helical magnetic field with an appropriate sign of helicity can compensate the Faraday depolarization resulting from the superposition of Faraday-rotated polarization planes from a spatially extended source. For radio emission from a helical magnetic field, the polarization as a function of the square of the wavelength becomes asymmetric with respect to zero. Mathematically speaking, the resulting emission occurs then either at observable or at unobservable (imaginary) wavelengths. We demonstrate that rotation measure (RM) synthesis allows for the reconstruction of the underlying Faraday dispersion function in the former case, but not in the latter.more » The presence of positive magnetic helicity can thus be detected by observing positive RM in highly polarized regions in the sky and negative RM in weakly polarized regions. Conversely, negative magnetic helicity can be detected by observing negative RM in highly polarized regions and positive RM in weakly polarized regions. The simultaneous presence of two magnetic constituents with opposite signs of helicity is shown to possess signatures that can be quantified through polarization peaks at specific wavelengths and the gradient of the phase of the Faraday dispersion function. Similar polarization peaks can tentatively also be identified for the bi-helical magnetic fields that are generated self-consistently by a dynamo from helically forced turbulence, even though the magnetic energy spectrum is then continuous. Finally, we discuss the possibility of detecting magnetic fields with helical and non-helical properties in external galaxies using the Square Kilometre Array.« less

Cascades of energy and helicity in axisymmetric turbulence

NASA Astrophysics Data System (ADS)

Qu, Bo; Naso, Aurore; Bos, Wouter J. T.

2018-01-01

A spectral analysis of strictly axisymmetric turbulence is performed. Both freely decaying and statistically steady flows are considered. In helical flows we identify a dual cascade, where energy is transferred towards the large scales and helicity to the smallest ones. It is shown that even in the absence of net helicity, a dual cascade persists, transferring energy backward and positively and negatively polarized helicity fluctuations forward.

On the Helicity of Open Magnetic Fields

NASA Astrophysics Data System (ADS)

Prior, C.; Yeates, A. R.

2014-06-01

We reconsider the topological interpretation of magnetic helicity for magnetic fields in open domains, and relate this to the relative helicity. Specifically, our domains stretch between two parallel planes, and each of these ends may be magnetically open. It is demonstrated that, while the magnetic helicity is gauge-dependent, its value in any gauge may be physically interpreted as the average winding number among all pairs of field lines with respect to some orthonormal frame field. In fact, the choice of gauge is equivalent to the choice of reference field in the relative helicity, meaning that the magnetic helicity is no less physically meaningful. We prove that a particular gauge always measures the winding with respect to a fixed frame, and propose that this is normally the best choice. For periodic fields, this choice is equivalent to measuring relative helicity with respect to a potential reference field. However, for aperiodic fields, we show that the potential field can be twisted. We prove by construction that there always exists a possible untwisted reference field.

VERTICAL KINK OSCILLATION OF A MAGNETIC FLUX ROPE STRUCTURE IN THE SOLAR CORONA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, S.; Cho, K.-S.; Nakariakov, V. M., E-mail: sjkim@kasi.re.kr

2014-12-20

Vertical transverse oscillations of a coronal magnetic rope, observed simultaneously in the 171 Å and 304 Å bandpasses of the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory (SDO), are detected. The oscillation period is about 700 s and the displacement amplitude is about 1 Mm. The oscillation amplitude remains constant during the observation. Simultaneous observation of the rope in the bandpasses corresponding to the coronal and chromospheric temperatures suggests that it has a multi-thermal structure. Oscillatory patterns in 171 Å and 304 Å are coherent, which indicates that the observed kink oscillation is collective, in which the ropemore » moves as a single entity. We interpret the oscillation as a fundamental standing vertically polarized kink mode of the rope, while the interpretation in terms of a perpendicular fast wave could not be entirely ruled out. In addition, the arcade situated above the rope and seen in the 171 Å bandpass shows an oscillatory motion with the period of about 1000 s.« less

Cryo-EM Structure Determination Using Segmented Helical Image Reconstruction.

PubMed

Fromm, S A; Sachse, C

2016-01-01

Treating helices as single-particle-like segments followed by helical image reconstruction has become the method of choice for high-resolution structure determination of well-ordered helical viruses as well as flexible filaments. In this review, we will illustrate how the combination of latest hardware developments with optimized image processing routines have led to a series of near-atomic resolution structures of helical assemblies. Originally, the treatment of helices as a sequence of segments followed by Fourier-Bessel reconstruction revealed the potential to determine near-atomic resolution structures from helical specimens. In the meantime, real-space image processing of helices in a stack of single particles was developed and enabled the structure determination of specimens that resisted classical Fourier helical reconstruction and also facilitated high-resolution structure determination. Despite the progress in real-space analysis, the combination of Fourier and real-space processing is still commonly used to better estimate the symmetry parameters as the imposition of the correct helical symmetry is essential for high-resolution structure determination. Recent hardware advancement by the introduction of direct electron detectors has significantly enhanced the image quality and together with improved image processing procedures has made segmented helical reconstruction a very productive cryo-EM structure determination method. © 2016 Elsevier Inc. All rights reserved.

Hinge-Like Motions in RNA Kink-Turns: The Role of the Second A-Minor Motif and Nominally Unpaired Bases

PubMed Central

Rázga, Filip; Koča, Jaroslav; Šponer, Jiří; Leontis, Neocles B.

2005-01-01

Kink-turn (K-turn) motifs are asymmetric internal loops found at conserved positions in diverse RNAs, with sharp bends in phosphodiester backbones producing V-shaped structures. Explicit-solvent molecular dynamics simulations were carried out for three K-turns from 23S rRNA, i.e., Kt-38 located at the base of the A-site finger, Kt-42 located at the base of the L7/L12 stalk, and Kt-58 located in domain III, and for the K-turn of human U4 snRNA. The simulations reveal hinge-like K-turn motions on the nanosecond timescale. The first conserved A-minor interaction between the K-turn stems is entirely stable in all simulations. The angle between the helical arms of Kt-38 and Kt-42 is regulated by local variations of the second A-minor (type I) interaction between the stems. Its variability ranges from closed geometries to open ones stabilized by insertion of long-residency waters between adenine and cytosine. The simulated A-minor geometries fully agree with x-ray data. Kt-58 and Kt-U4 exhibit similar elbow-like motions caused by conformational change of the adenosine from the nominally unpaired region. Despite the observed substantial dynamics of K-turns, key tertiary interactions are stable and no sign of unfolding is seen. We suggest that some K-turns are flexible elements mediating large-scale ribosomal motions during the protein synthesis cycle. PMID:15722438

The Helicity Injected Torus (HIT) Program

NASA Astrophysics Data System (ADS)

Jarboe, T. R.; Gu, P.; Hamp, W.; Izzo, V.; Jewell, P.; Liptac, J.; McCollam, K. J.; Nelson, B. A.; Raman, R.; Redd, A. J.; Shumlak, U.; Sieck, P. E.; Smith, R. J.; Jain, K. K.; Nagata, M.; Uyama, T.

2000-10-01

The purpose of the Helicity Injected Torus (HIT) program is to develop current drive techniques for low-aspect-ratio toroidal plasmas. The present HIT-II spherical tokamak experiment is capable of both Coaxial Helicity Injection (CHI) and transformer action current drive. The HIT-II device itself is modestly sized (major radius R = 0.3 m, minor radius a = 0.2 m, with an on-axis magnetic field of up to Bo = 0.5 T), but has demonstrated toroidal plasma currents of up to 200 kA, using either CHI or transformer drive. An overview of ongoing research on HIT-II plasmas, including recent results, will be presented. An electron-locking model has been developed for helicity injection current drive; a description of this model will be presented, as well as comparisons to experimental results from the HIT and HIT-II devices. Empirical results from both the HIT program and past spheromak research, buttressed by theoretical developments, have led to the design of the upcoming HIT-SI (Helicity Injected Torus with Steady Inductive helicity injection) device (T.R. Jarboe, Fusion Technology 36, p. 85, 1999). HIT-SI will be able to form a high-beta spheromak, a low aspect ratio RFP or a spherical tokamak using constant inductive helicity injection. The HIT-SI design and construction progress will be presented.

Paths and wakes of deformable nearly spheroidal rising bubbles close to the transition to path instability

NASA Astrophysics Data System (ADS)

Cano-Lozano, José Carlos; Martínez-Bazán, Carlos; Magnaudet, Jacques; Tchoufag, Joël

2016-09-01

We report on a series of results provided by three-dimensional numerical simulations of nearly spheroidal bubbles freely rising and deforming in a still liquid in the regime close to the transition to path instability. These results improve upon those of recent computational studies [Cano-Lozano et al., Int. J. Multiphase Flow 51, 11 (2013), 10.1016/j.ijmultiphaseflow.2012.11.005; Phys. Fluids 28, 014102 (2016), 10.1063/1.4939703] in which the neutral curve associated with this transition was obtained by considering realistic but frozen bubble shapes. Depending on the dimensionless parameters that characterize the system, various paths geometries are observed by letting an initially spherical bubble starting from rest rise under the effect of buoyancy and adjust its shape to the surrounding flow. These include the well-documented rectilinear axisymmetric, planar zigzagging, and spiraling (or helical) regimes. A flattened spiraling regime that most often eventually turns into either a planar zigzagging or a helical regime is also frequently observed. Finally, a chaotic regime in which the bubble experiences small horizontal displacements (typically one order of magnitude smaller than in the other regimes) is found to take place in a region of the parameter space where no standing eddy exists at the back of the bubble. The discovery of this regime provides evidence that path instability does not always result from a wake instability as previously believed. In each regime, we examine the characteristics of the path, bubble shape, and vortical structure in the wake, as well as their couplings. In particular, we observe that, depending on the fluctuations of the rise velocity, two different vortex shedding modes exist in the zigzagging regime, confirming earlier findings with falling spheres. The simulations also reveal that significant bubble deformations may take place along zigzagging or spiraling paths and that, under certain circumstances, they dramatically alter

Tubular Crystals and Helical Arrays: Structural Determination of HIV-1 Capsid Assemblies Using Iterative Helical Real-Space Reconstruction

PubMed Central

Zhang, Peijun; Meng, Xin; Zhao, Gongpu

2013-01-01

Helical structures are important in many different life forms and are well-suited for structural studies by cryo-EM. A unique feature of helical objects is that a single projection image contains all the views needed to perform a three-dimensional (3D) crystallographic reconstruction. Here, we use HIV-1 capsid assemblies to illustrate the detailed approaches to obtain 3D density maps from helical objects. Mature HIV-1 particles contain a conical- or tubular-shaped capsid that encloses the viral RNA genome and performs essential functions in the virus life cycle. The capsid is composed of capsid protein (CA) oligomers which are helically arranged on the surface. The N-terminal domain (NTD) of CA is connected to its C-terminal domain (CTD) through a flexible hinge. Structural analysis of two- and three-dimensional crystals provided molecular models of the capsid protein (CA) and its oligomer forms. We determined the 3D density map of helically assembled HIV-1 CA hexamers at 16 Å resolution using an iterative helical real-space reconstruction method. Docking of atomic models of CA-NTD and CA-CTD dimer into the electron density map indicated that the CTD dimer interface is retained in the assembled CA. Furthermore, molecular docking revealed an additional, novel CTD trimer interface. PMID:23132072

Expanding Non-solenoidal Startup with Local Helicity Injection to Increased Toroidal Field and Helicity Injection Rate

NASA Astrophysics Data System (ADS)

Perry, J. M.; Barr, J. L.; Bodner, G. M.; Bongard, M. W.; Burke, M. G.; Fonck, R. J.; Hinson, E. T.; Lewicki, B. T.; Reusch, J. A.; Schlossberg, D. J.; Winz, G. R.

2015-11-01

Local helicity injection (LHI) is a non-solenoidal startup technique under development on the Pegasus ST. Plasma currents up to 0.18 MA have been initiated by LHI in conjunction with poloidal field induction. A 0-D power balance model has been developed to predict plasma current evolution by balancing helicity input against resistive dissipation. The model is being validated against a set of experimental measurements and magnetic reconstructions with radically varied plasma geometric evolutions. Outstanding physics issues with LHI startup are the scalings of confinement and MHD activity with helicity injection rate and toroidal field strength, as well as injector behavior at high field. Preliminary results from the newly-installed Thomson scattering system suggest core temperatures of a few hundred eV during LHI startup. Measurements are being expanded to multiple spatial points for ongoing confinement studies. A set of larger-area injectors is being installed in the lower divertor region, where increased toroidal field will provide a helicity injection rate over 3 times that of outboard injectors. In this regime helicity injection will be the dominant current drive. Experiments with divertor injectors will permit experimental differentiation of several possible confinement models, and demonstrate the feasibility of LHI startup at high field. Work supported by US DOE grant DE-FG02-96ER54375.

On the helical arrangements of protein molecules.

PubMed

Dauter, Zbigniew; Jaskolski, Mariusz

2018-03-01

Helical structures are prevalent in biology. In the PDB, there are many examples where protein molecules are helically arranged, not only according to strict crystallographic screw axes but also according to approximate noncrystallographic screws. The preponderance of such screws is rather striking as helical arrangements in crystals must preserve an integer number of subunits per turn, while intuition and simple packing arguments would seem to favor fractional helices. The article provides insights into such questions, based on stereochemistry, trigonometry, and topology, and illustrates the findings with concrete PDB structures. Updated statistics of Sohncke space groups in the PDB are also presented. © 2017 The Protein Society.

Global linear gyrokinetic simulation of energetic particle-driven instabilities in the LHD stellarator

DOE PAGES

Spong, Donald A.; Holod, Ihor; Todo, Y.; ...

2017-06-23

Energetic particles are inherent to toroidal fusion systems and can drive instabilities in the Alfvén frequency range, leading to decreased heating efficiency, high heat fluxes on plasma-facing components, and decreased ignition margin. The applicability of global gyrokinetic simulation methods to macroscopic instabilities has now been demonstrated and it is natural to extend these methods to 3D configurations such as stellarators, tokamaks with 3D coils and reversed field pinch helical states. This has been achieved by coupling the GTC global gyrokinetic PIC model to the VMEC equilibrium model, including 3D effects in the field solvers and particle push. Here, this papermore » demonstrates the application of this new capability to the linearized analysis of Alfvénic instabilities in the LHD stellarator. For normal shear iota profiles, toroidal Alfvén instabilities in the n = 1 and 2 toroidal mode families are unstable with frequencies in the 75 to 110 kHz range. Also, an LHD case with non-monotonic shear is considered, indicating reductions in growth rate for the same energetic particle drive. Finally, since 3D magnetic fields will be present to some extent in all fusion devices, the extension of gyrokinetic models to 3D configurations is an important step for the simulation of future fusion systems.« less

Numerical simulation of helical flow in a cylindrical channel

NASA Astrophysics Data System (ADS)

Vasiliev, A.; Sukhanovskii, A.; Stepanov, R.

2017-06-01

Numerical simulation of the helical flow in a cylindrical channel with diverter was carried out using open-source software OpenFOAM Extend 4.0. The velocity, vorticity and helicity density distributions were analyzed. It was shown that azimithal contribution of helicity is negative near the wall and positive in the center. In opposite axial helicity contribution is negative in the center and positive near the wall. Analysis of helicity of non-axisymmetric part of the flow showed that it has substantial values near the diverter but than rapidly decreases with y (axial coordinate) and further downstream it can be neglected. Dependencies of integrated values of azimuthal Hϕ and axial Hy contributions of helicity density on y show a remarkable quantitative similarity. It was found that integral values of Hϕ and Hy are negative for all y. Magnitudes of Hϕ and Hy decrease after the diverter up to y ≈ 70 mm and after that monotonically increase. The flow behind the diverter is characterized by substantial amount of helicity and can be used as a helicity generator.

Fabrication and experimentation of FRP helical spring

NASA Astrophysics Data System (ADS)

Ekanthappa, J.; Shiva Shankar, G. S.; Amith, B. M.; Gagan, M.

2016-09-01

In present scenario, the automobile industry sector is showing increased interest in reducing the unsprung weight of the automobile & hence increasing the fuel Efficiency. One of the feasible sub systems of a vehicle where weight reduction may be attempted is vehicle- suspension system. Usage of composite material is a proven way to lower the component weight without any compromise in strength. The composite materials are having high specific strength, more elastic strain energy storage capacity in comparison with those of steel. Therefore, helical coil spring made of steel is replaceable by composite cylindrical helical coil spring. This research aims at preparing a re-usable mandrel (mould) of Mild steel, developing a setup for fabrication, fabrication of FRP helical spring using continuous glass fibers and Epoxy Resin (Polymer). Experimentation has been conducted on fabricated FRP helical spring to determine its strength parameters & for failure analysis. It is found that spring stiffness (K) of Glass/Epoxy helical-spring is greater than steel-coil spring with reduced weight.

Simplified Fabrication of Helical Copper Antennas

NASA Technical Reports Server (NTRS)

Petro, Andrew

2006-01-01

A simplified technique has been devised for fabricating helical antennas for use in experiments on radio-frequency generation and acceleration of plasmas. These antennas are typically made of copper (for electrical conductivity) and must have a specific helical shape and precise diameter.

Magnetic Helicity and the Solar Dynamo

NASA Technical Reports Server (NTRS)

Canfield, Richard C.

1997-01-01

The objective of this investigation is to open a new window into the solar dynamo, convection, and magnetic reconnection through measurement of the helicity density of magnetic fields in the photosphere and tracing of large-scale patterns of magnetic helicity in the corona.

Decay of helical and nonhelical magnetic knots

NASA Astrophysics Data System (ADS)

Candelaresi, Simon; Brandenburg, Axel

2011-07-01

We present calculations of the relaxation of magnetic field structures that have the shape of particular knots and links. A set of helical magnetic flux configurations is considered, which we call n-foil knots of which the trefoil knot is the most primitive member. We also consider two nonhelical knots; namely, the Borromean rings as well as a single interlocked flux rope that also serves as the logo of the Inter-University Centre for Astronomy and Astrophysics in Pune, India. The field decay characteristics of both configurations is investigated and compared with previous calculations of helical and nonhelical triple-ring configurations. Unlike earlier nonhelical configurations, the present ones cannot trivially be reduced via flux annihilation to a single ring. For the n-foil knots the decay is described by power laws that range form t-2/3 to t-1/3, which can be as slow as the t-1/3 behavior for helical triple-ring structures that were seen in earlier work. The two nonhelical configurations decay like t-1, which is somewhat slower than the previously obtained t-3/2 behavior in the decay of interlocked rings with zero magnetic helicity. We attribute the difference to the creation of local structures that contain magnetic helicity which inhibits the field decay due to the existence of a lower bound imposed by the realizability condition. We show that net magnetic helicity can be produced resistively as a result of a slight imbalance between mutually canceling helical pieces as they are being driven apart. We speculate that higher order topological invariants beyond magnetic helicity may also be responsible for slowing down the decay of the two more complicated nonhelical structures mentioned above.

Real-space processing of helical filaments in SPARX

PubMed Central

Behrmann, Elmar; Tao, Guozhi; Stokes, David L.; Egelman, Edward H.; Raunser, Stefan; Penczek, Pawel A.

2012-01-01

We present a major revision of the iterative helical real-space refinement (IHRSR) procedure and its implementation in the SPARX single particle image processing environment. We built on over a decade of experience with IHRSR helical structure determination and we took advantage of the flexible SPARX infrastructure to arrive at an implementation that offers ease of use, flexibility in designing helical structure determination strategy, and high computational efficiency. We introduced the 3D projection matching code which now is able to work with non-cubic volumes, the geometry better suited for long helical filaments, we enhanced procedures for establishing helical symmetry parameters, and we parallelized the code using distributed memory paradigm. Additional feature includes a graphical user interface that facilitates entering and editing of parameters controlling the structure determination strategy of the program. In addition, we present a novel approach to detect and evaluate structural heterogeneity due to conformer mixtures that takes advantage of helical structure redundancy. PMID:22248449

Passive micromixers with dual helical channels

NASA Astrophysics Data System (ADS)

Liu, Keyin; Yang, Qing; Chen, Feng; Zhao, Yulong; Meng, Xiangwei; Shan, Chao; Li, Yanyang

2015-02-01

In this study, a three-dimensional (3D) micromixer with cross-linked double helical microchannels is studied to achieve rapid mixing of fluids at low Reynolds numbers (Re). The 3D micromixer takes full advantages of the chaotic advection model with helical microchannels; meanwhile, the proposed crossing structure of double helical microchannels enables two flow patterns of repelling flow and straight flow in the fluids to promote the agitation effect. The complex 3D micromixer is realized by an improved femtosecond laser wet etching (FLWE) technology embedded in fused silica. The mixing results show that cross-linked double helical microchannels can achieve excellent mixing within 3 cycles (300 μm) over a wide range of low Re (1.5×10-3~600), which compare well with the conventional passive micromixers. This highly-effective micromixer is hoped to contribute to the integration of microfluidic systems.

Helicity amplitudes for QCD with massive quarks

NASA Astrophysics Data System (ADS)

Ochirov, Alexander

2018-04-01

The novel massive spinor-helicity formalism of Arkani-Hamed, Huang and Huang provides an elegant way to calculate scattering amplitudes in quantum chromodynamics for arbitrary quark spin projections. In this note we compute two families of tree-level QCD amplitudes with one massive quark pair and n - 2 gluons. The two cases include all gluons with identical helicity and one opposite-helicity gluon being color-adjacent to one of the quarks. Our results naturally incorporate the previously known amplitudes for both quark spins quantized along one of the gluonic momenta. In the all-multiplicity formulae presented here the spin quantization axes can be tuned at will, which includes the case of the definite-helicity quark states.

Magnetic helicity in emerging solar active regions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Y.; Hoeksema, J. T.; Bobra, M.

Using vector magnetic field data from the Helioseismic and Magnetic Imager instrument aboard the Solar Dynamics Observatory, we study magnetic helicity injection into the corona in emerging active regions (ARs) and examine the hemispheric helicity rule. In every region studied, photospheric shearing motion contributes most of the helicity accumulated in the corona. In a sample of 28 emerging ARs, 17 follow the hemisphere rule (61% ± 18% at a 95% confidence interval). Magnetic helicity and twist in 25 ARs (89% ± 11%) have the same sign. The maximum magnetic twist, which depends on the size of an AR, is inferredmore » in a sample of 23 emerging ARs with a bipolar magnetic field configuration.« less

Inhomogeneous helicity effect in the solar angular-momentum transport

NASA Astrophysics Data System (ADS)

Yokoi, Nobumitsu

2017-04-01

Coupled with mean absolute vorticity Ω∗ (rotation and mean relative vorticity), inhomogeneous turbulent helicity is expected to contribute to the generation of global flow structure against the linear and angular momentum mixing due to turbulent or eddy viscosity. This inhomogeneous helicity effect was originally derived in Yokoi & Yoshizawa (1993) [1], and recently has been validated by direct numerical simulations (DNSs) of rotating helical turbulence [2]. Turbulence effect enters the mean-vorticity equation through the turbulent vortexmotive force ⟨u'×ω'⟩ [u': velocity fluctuation, ω'(= ∇× u'): vorticity fluctuation], which is the vorticity counterpart of the electromotive force ⟨u'× b'⟩ (b': magnetic fluctuation) in the mean magnetic-field induction. The mean velocity induction δU is proportional to the vortexmotive force. According to the theoretical result [1,2], it is expressed as δU = -νT∇×Ω∗-ηT(∇2H)Ω∗, where ηT is the transport coefficient, H = ⟨u'ṡω'⟩ the turbulent helicity, and Ω∗ the mean absolute vorticity. The first term corresponds to the enhanced diffusion due to turbulent viscosity νT. The second term expresses the large-scale flow generation due to inhomogeneous helicity. Since helicity is self-generated in rotating stratified turbulence [3], an inhomogeneous helicity distribution is expected to exist in the solar convection zone. A rising flow with expansion near the surface of the Sun generates a strongly negative helicity there [4]. This spatial distribution of helicity would lead to a positive Laplacian of turbulent helicity (∇2H > 0) in the subsurface layer of the Sun. In the combination with the large-scale vorticity associated with the meridional circulation, the inhomogeneous helicity effect works for accelerating the mean velocity in the azimuthal direction. The relevance of this inhomogeneous helicity effect in the solar convection zone is discussed further. References [1] Yokoi, N. and

CURRENT AND KINETIC HELICITY OF LONG-LIVED ACTIVITY COMPLEXES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Komm, Rudolf; Gosain, Sanjay, E-mail: komm@nso.edu

2015-01-01

We study long-lived activity complexes and their current helicity at the solar surface and their kinetic helicity below the surface. The current helicity has been determined from synoptic vector magnetograms from the NSO/SOLIS facility, and the kinetic helicity of subsurface flows has been determined with ring-diagram analysis applied to full-disk Dopplergrams from NSO/GONG and SDO/HMI. Current and kinetic helicity of activity complexes follow the hemispheric helicity rule with mainly positive values (78%; 78%, respectively, with a 95% confidence level of 31%) in the southern hemisphere and negative ones (80%; 93%, respectively, with a 95% confidence level of 22% and 14%,more » respectively) in the northern hemisphere. The locations with the dominant sign of kinetic helicity derived from Global Oscillation Network Group (GONG) and SDO/HMI data are more organized than those of the secondary sign even if they are not part of an activity complex, while locations with the secondary sign are more fragmented. This is the case for both hemispheres even for the northern one where it is not as obvious visually due to the large amount of magnetic activity present as compared to the southern hemisphere. The current helicity shows a similar behavior. The dominant sign of current helicity is the same as that of kinetic helicity for the majority of the activity complexes (83% with a 95% confidence level of 15%). During the 24 Carrington rotations analyzed here, there is at least one longitude in each hemisphere where activity complexes occur repeatedly throughout the epoch. These ''active'' longitudes are identifiable as locations of strong current and kinetic helicity of the same sign.« less

High regression rate hybrid rocket fuel grains with helical port structures

NASA Astrophysics Data System (ADS)

Walker, Sean D.

Hybrid rockets are popular in the aerospace industry due to their storage safety, simplicity, and controllability during rocket motor burn. However, they produce fuel regression rates typically 25% lower than solid fuel motors of the same thrust level. These lowered regression rates produce unacceptably high oxidizer-to-fuel (O/F) ratios that produce a potential for motor instability, nozzle erosion, and reduced motor duty cycles. To achieve O/F ratios that produce acceptable combustion characteristics, traditional cylindrical fuel ports are fabricated with very long length-to-diameter ratios to increase the total burning area. These high aspect ratios produce further reduced fuel regression rate and thrust levels, poor volumetric efficiency, and a potential for lateral structural loading issues during high thrust burns. In place of traditional cylindrical fuel ports, it is proposed that by researching the effects of centrifugal flow patterns introduced by embedded helical fuel port structures, a significant increase in fuel regression rates can be observed. The benefits of increasing volumetric efficiencies by lengthening the internal flow path will also be observed. The mechanisms of this increased fuel regression rate are driven by enhancing surface skin friction and reducing the effect of boundary layer "blowing" to enhance convective heat transfer to the fuel surface. Preliminary results using additive manufacturing to fabricate hybrid rocket fuel grains from acrylonitrile-butadiene-styrene (ABS) with embedded helical fuel port structures have been obtained, with burn-rate amplifications up to 3.0x than that of cylindrical fuel ports.

Revascularization of the internal carotid artery for isolated, stenotic, and symptomatic kinking.

PubMed

Illuminati, Giulio; Calió, Francesco G; Papaspyropoulos, Vassilios; Montesano, Giuseppe; D'Urso, Antonio

2003-02-01

The operation for isolated, stenotic, and symptomatic kinking of the internal carotid artery is safe and effective in preventing stroke and relieving the symptoms of cerebral ischemia. A consecutive sample clinical study with a mean follow-up of 44 months. The surgical department of an academic tertiary care center and an affiliated secondary care center. Fifty-four patients with a mean age of 67 years underwent 55 revascularizations of the internal carotid artery. The surgical procedures consisted of the following: shortening and reimplantation in the common carotid artery in 36 cases, bypass grafting in 15 cases, and transposition into the external carotid artery in 4 cases. Cumulative survival, primary patency, and stroke-free and neurologic symptom-free rates expressed by standard life-table analysis. No patients died in the postoperative period. The postoperative stroke rate was 1.8%. The cumulative rates (SEs) at 5 years were as follows: survival, 70% (10.2%); primary patency, 89% (7.8%); overall stroke free, 92% (6.8%); ipsilateral stroke free, 96% (5.3%); neurologic symptom free, 90% (7.5%); and ipsilateral symptom free, 93% (6.5%). Revascularization of the internal carotid artery for the treatment of isolated, stenotic, and symptomatic kinking is safe and effective in preventing stroke and relieving symptoms of cerebrovascular insufficiency.

Coronal loop seismology using damping of standing kink oscillations by mode coupling. II. additional physical effects and Bayesian analysis

NASA Astrophysics Data System (ADS)

Pascoe, D. J.; Anfinogentov, S.; Nisticò, G.; Goddard, C. R.; Nakariakov, V. M.

2017-04-01

Context. The strong damping of kink oscillations of coronal loops can be explained by mode coupling. The damping envelope depends on the transverse density profile of the loop. Observational measurements of the damping envelope have been used to determine the transverse loop structure which is important for understanding other physical processes such as heating. Aims: The general damping envelope describing the mode coupling of kink waves consists of a Gaussian damping regime followed by an exponential damping regime. Recent observational detection of these damping regimes has been employed as a seismological tool. We extend the description of the damping behaviour to account for additional physical effects, namely a time-dependent period of oscillation, the presence of additional longitudinal harmonics, and the decayless regime of standing kink oscillations. Methods: We examine four examples of standing kink oscillations observed by the Atmospheric Imaging Assembly (AIA) onboard the Solar Dynamics Observatory (SDO). We use forward modelling of the loop position and investigate the dependence on the model parameters using Bayesian inference and Markov chain Monte Carlo (MCMC) sampling. Results: Our improvements to the physical model combined with the use of Bayesian inference and MCMC produce improved estimates of model parameters and their uncertainties. Calculation of the Bayes factor also allows us to compare the suitability of different physical models. We also use a new method based on spline interpolation of the zeroes of the oscillation to accurately describe the background trend of the oscillating loop. Conclusions: This powerful and robust method allows for accurate seismology of coronal loops, in particular the transverse density profile, and potentially reveals additional physical effects.

Helical modes generate antimagnetic rotational spectra in nuclei

NASA Astrophysics Data System (ADS)

Malik, Sham S.

2018-03-01

A systematic analysis of the antimagnetic rotation band using r -helicity formalism is carried out for the first time. The observed octupole correlation in a nucleus is likely to play a role in establishing the antimagnetic spectrum. Such octupole correlations are explained within the helical orbits. In a rotating field, two identical fermions (generally protons) with paired spins generate these helical orbits in such a way that its positive (i.e., up) spin along the axis of quantization refers to one helicity (right-handedness) while negative (down) spin along the same quantization-axis decides another helicity (left-handedness). Since the helicity remains invariant under rotation, therefore, the quantum state of a fermion is represented by definite angular momentum and helicity. These helicity represented states support a pear-shaped structure of a rotating system having z axis as the symmetry axis. A combined operation of parity, time-reversal, and signature symmetries ensures an absence of one of the signature partner band from the observed antimagnetic spectrum. This formalism has also been tested for the recently observed negative parity Δ I =2 antimagnetic spectrum in odd-A 101Pd nucleus and explains nicely its energy spectrum as well as the B (E 2 ) values. Further, this formalism is found to be fully consistent with twin-shears mechanism popularly known for such type of rotational bands. It also provides significant clue for extending these experiments in various mass regions spread over the nuclear chart.

Simulation of the development and interaction of instabilities in a relativistic electron beam under variation of the beam wall thickness

DOE Office of Scientific and Technical Information (OSTI.GOV)

Badarin, A. A.; Kurkin, S. A.; Koronovskii, A. A.

The development and interaction of Bursian and diocotron instabilities in an annular relativistic electron beam propagating in a cylindrical drift chamber are investigated analytically and numerically as functions of the beam wall thickness and the magnitude of the external uniform magnetic field. It is found that the interaction of instabilities results in the formation of a virtual cathode with a complicated rotating helical structure and several reflection regions (electron bunches) in the azimuthal direction. It is shown that the number of electron bunches in the azimuthal direction increases with decreasing beam wall thickness and depends in a complicated manner onmore » the magnitude of the external magnetic field.« less

Theoretical model of chirality-induced helical self-propulsion

NASA Astrophysics Data System (ADS)

Yamamoto, Takaki; Sano, Masaki

2018-01-01

We recently reported the experimental realization of a chiral artificial microswimmer exhibiting helical self-propulsion [T. Yamamoto and M. Sano, Soft Matter 13, 3328 (2017), 10.1039/C7SM00337D]. In the experiment, cholesteric liquid crystal (CLC) droplets dispersed in surfactant solutions swam spontaneously, driven by the Marangoni flow, in helical paths whose handedness is determined by the chirality of the component molecules of CLC. To study the mechanism of the emergence of the helical self-propelled motion, we propose a phenomenological model of the self-propelled helical motion of the CLC droplets. Our model is constructed by symmetry argument in chiral systems, and it describes the dynamics of CLC droplets with coupled time-evolution equations in terms of a velocity, an angular velocity, and a tensor variable representing the symmetry of the helical director field of the droplet. We found that helical motions as well as other chiral motions appear in our model. By investigating bifurcation behaviors between each chiral motion, we found that the chiral coupling terms between the velocity and the angular velocity, the structural anisotropy of the CLC droplet, and the nonlinearity of model equations play a crucial role in the emergence of the helical motion of the CLC droplet.

The non-resonant kink modes triggering strong sawtooth-like crashes in the EAST tokamak

NASA Astrophysics Data System (ADS)

Li, Erzhong; Igochine, V.; Dumbrajs, O.; Xu, L.; Chen, K.; Shi, T.; Hu, L.

2014-12-01

Evolution of the safety factor (q) profile during L-H transitions in the Experimental Advanced Superconducting Tokamak (EAST) was accompanied by strong core crashes prior to regular sawtooth behavior. These crashes appeared in the absence of q = 1 (q is the safety factor) rational surface inside the plasma. Analysis indicates that the m/n = 2/1 tearing mode is destabilized and phase-locked with the m/n = 1/1 non-resonant kink mode (the q = 1 rational surface is absent) due to the self-consistent evolution of plasma profiles as the L-H transition occurs (m and n are the poloidal and toroidal mode numbers, respectively). The growing m/n = 1/1 mode destabilizes the m/n = 2/2 kink mode which eventually triggers the strong crash due to an anomalous heat conductivity, as predicted by the transport model of stochastic magnetic fields using experimental parameters. It is also shown that the magnetic topology changes with the amplitude of m/n = 2/2 mode and the value of center safety factor in a reasonable range.

Multipinhole SPECT helical scan parameters and imaging volume

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yao, Rutao, E-mail: rutaoyao@buffalo.edu; Deng, Xiao; Wei, Qingyang

Purpose: The authors developed SPECT imaging capability on an animal PET scanner using a multiple-pinhole collimator and step-and-shoot helical data acquisition protocols. The objective of this work was to determine the preferred helical scan parameters, i.e., the angular and axial step sizes, and the imaging volume, that provide optimal imaging performance. Methods: The authors studied nine helical scan protocols formed by permuting three rotational and three axial step sizes. These step sizes were chosen around the reference values analytically calculated from the estimated spatial resolution of the SPECT system and the Nyquist sampling theorem. The nine helical protocols were evaluatedmore » by two figures-of-merit: the sampling completeness percentage (SCP) and the root-mean-square (RMS) resolution. SCP was an analytically calculated numerical index based on projection sampling. RMS resolution was derived from the reconstructed images of a sphere-grid phantom. Results: The RMS resolution results show that (1) the start and end pinhole planes of the helical scheme determine the axial extent of the effective field of view (EFOV), and (2) the diameter of the transverse EFOV is adequately calculated from the geometry of the pinhole opening, since the peripheral region beyond EFOV would introduce projection multiplexing and consequent effects. The RMS resolution results of the nine helical scan schemes show optimal resolution is achieved when the axial step size is the half, and the angular step size is about twice the corresponding values derived from the Nyquist theorem. The SCP results agree in general with that of RMS resolution but are less critical in assessing the effects of helical parameters and EFOV. Conclusions: The authors quantitatively validated the effective FOV of multiple pinhole helical scan protocols and proposed a simple method to calculate optimal helical scan parameters.« less

Small-scale anisotropy induced by spectral forcing and by rotation in non-helical and helical turbulence

NASA Astrophysics Data System (ADS)

Vallefuoco, Donato; Naso, Aurore; Godeferd, Fabien S.

2018-02-01

We study the effect of large-scale spectral forcing on the scale-dependent anisotropy of the velocity field in direct numerical simulations of homogeneous turbulence. ABC-type forcing and helical or non-helical Euler-type forcing are considered. We propose a scale-dependent characterisation of anisotropy based on a modal decomposition of the two-point velocity tensor spectrum. This produces direction-dependent spectra of energy, helicity and polarisation. We examine the conditions that allow anisotropy to develop in the small scales due to forcing and we show that the theoretically expected isotropy is not exactly obtained, even in the smallest scales, for ABC and helical Euler forcings. When adding rotation, the anisotropy level in ABC-forced simulations is similar to that of lower Rossby number Euler-forced runs. Moreover, even at low rotation rate, the natural anisotropy induced by the Coriolis force is visible at all scales, and two distinct wavenumber ranges appear from our fine-grained characterisation, not separated by the Zeman scale but by a scale where rotation and dissipation are balanced.

Excitation of high wavenumber fluctuations by externally-imposed helical fields in edge pedestal plasmas

NASA Astrophysics Data System (ADS)

Singh, R.; Kim, J.-H.; Jhang, Hogun; Das, S.

2018-03-01

Two-step mode coupling analyses for nonlinear excitation of the ballooning mode (BM) in pedestal plasma by external helical magnetic field perturbation [Resonant Magnetic Perturbations (RMP)] are presented. This technique allows calculating the effect of higher harmonic sidebands generated by interaction of long scale RMP pump and BM. It is shown that RMP field perturbations can modify the BM growth rate and frequency through nonlinear Reynolds stress and magnetic stress. In particular, it is shown that both stresses can efficiently excite high wavenumber BM fluctuations which, in turn, can enhance the transport in the pedestal. Another notable feature of this analysis is the existence of short scale (high- k y ) nonlinear instability at Alfven time scale near the ideal BM threshold boundary.

Collective Modes of Dust Helical Clusters

NASA Astrophysics Data System (ADS)

Tsytovich, V. N.; Gousein-Zade, N. G.; Morfill, G. E.

2005-10-01

The helical structures are the simplest 3D crystal-like cylindrical structures with radius R being a system of 2D clusters equally separated along the cylindrical axis with a relative rotation on constant angle φ0. For mean free path for grain charging much larger than the separation of the grains, the total energy of grain interaction is a sum of all pair grain interactions. The helical structures have been found experimentally for ions in laser traps in cylindrical gas discharges at very low temperatures (in both case as ``warms''). The equilibrium criterion and the criteria of stability including the absence of saddle points show that in the plane ρ, φ the bifurcation points are often present with new branches appearing (stable and unstable). Numerical MD simulations show that for cylindrical symmetry any random distributions of grains is developing into helical structures. The theory of collective modes of helical structures is developed for arbitrary grain interactions. The dispersion relation for frequencies of the collective modes for different branches of helical structures is derived and solved numerically for interaction including different type of screened grain potentials including the grain attraction. The dispersion relation in the first Brillouin zone for the square of the frequency ω2 is shown to be a be-cubic equation and gives the square of frequency ω2 > 0 for stable modes and the square of the growth rates for the unstable modes ω2 < 0. Modes for helical structures in parabolic external confining potential well perpendicular to cylindrical axis are found. Stabile self-confined structures without external confinement are discovered in presence of both non-collective and collective grain attractions.

Characteristics of Helical Flow through Neck Cutoffs

NASA Astrophysics Data System (ADS)

Richards, D.; Konsoer, K. M.; Turnipseed, C.; Willson, C. S.

2017-12-01

Meander cutoffs and oxbows lakes are a ubiquitous feature of riverine landscapes yet there is a paucity of detailed investigations concentrated on the three-dimensional flow structure through evolving neck cutoffs. The purpose of this research is to investigate and characterize helical flow through neck cutoffs with two different planform configurations: elongate meander loops and serpentine loops. Three-dimensional velocity measurements was collected with an acoustic Doppler current profiler for five cutoffs on the White River, Arkansas. Pronounced helical flow was found through all elongate loop cutoff sites, formed from the balance between centrifugal force resulting from the curving of flow through the cutoff channel and pressure gradient force resulting from water surface super-elevation between primary flow and flow at the entrance and exit of the abandoned loop. The sense of motion of the helical flow caused near-surface fluid to travel outward toward the abandoned loop while near-bed fluid was redirected toward the downstream channel. Another characteristic of the helical flow structure for elongate loop cutoffs was the reversal of helical flow over a relatively short distance, causing patterns of secondary circulation that differed from typical patterns observed through curved channels with point bars. Lastly, helical flow was revealed within zones of strong flow recirculation, enhanced by an exchange of streamwise momentum between shear layers.

FILAMENT CHANNEL FORMATION VIA MAGNETIC HELICITY CONDENSATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knizhnik, K. J.; Antiochos, S. K.; DeVore, C. R.

2015-08-20

A major unexplained feature of the solar atmosphere is the accumulation of magnetic shear in the form of filament channels at photospheric polarity inversion lines (PILs). In addition to free energy, this shear represents magnetic helicity, which is conserved under reconnection. In this paper we address the problem of filament channel formation and show how filaments acquire their shear and magnetic helicity. The results of three-dimensional (3D) simulations using the Adaptively Refined Magnetohydrodynamics Solver are presented. Our findings support the model of filament channel formation by magnetic helicity condensation that was developed by Antiochos. We consider the small-scale photospheric twistingmore » of a quasi-potential flux system that is bounded by a PIL and contains a coronal hole (CH). The magnetic helicity injected by the small-scale photospheric motions is shown to inverse cascade up to the largest allowable scales that define the closed flux system: the PIL and the CH. This process produces field lines that are both sheared and smooth, and are sheared in opposite senses at the PIL and the CH. The accumulated helicity and shear flux are shown to be in excellent quantitative agreement with the helicity condensation model. We present a detailed analysis of the simulations, including comparisons of our analytical and numerical results, and discuss their implications for observations.« less

Helicity conservation under quantum reconnection of vortex rings.

PubMed

Zuccher, Simone; Ricca, Renzo L

2015-12-01

Here we show that under quantum reconnection, simulated by using the three-dimensional Gross-Pitaevskii equation, self-helicity of a system of two interacting vortex rings remains conserved. By resolving the fine structure of the vortex cores, we demonstrate that the total length of the vortex system reaches a maximum at the reconnection time, while both writhe helicity and twist helicity remain separately unchanged throughout the process. Self-helicity is computed by two independent methods, and topological information is based on the extraction and analysis of geometric quantities such as writhe, total torsion, and intrinsic twist of the reconnecting vortex rings.

Small-x asymptotics of the gluon helicity distribution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kovchegov, Yuri V.; Pitonyak, Daniel; Sievert, Matthew D.

2017-10-27

Here, we determine the small-x asymptotics of the gluon helicity distribution in a proton at leading order in perturbative QCD at large N c. To achieve this, we begin by evaluating the dipole gluon helicity TMD at small x. In the process we obtain an interesting new result: in contrast to the unpolarized dipole gluon TMD case, the operator governing the small-x behavior of the dipole gluon helicity TMD is different from the operator corresponding to the polarized dipole scattering amplitude (used in our previous work to determine the small-x asymptotics of the quark helicity distribution).

THE EFFECTS OF SPATIAL SMOOTHING ON SOLAR MAGNETIC HELICITY PARAMETERS AND THE HEMISPHERIC HELICITY SIGN RULE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ocker, Stella Koch; Petrie, Gordon, E-mail: socker@oberlin.edu, E-mail: gpetrie@nso.edu

The hemispheric preference for negative/positive helicity to occur in the northern/southern solar hemisphere provides clues to the causes of twisted, flaring magnetic fields. Previous studies on the hemisphere rule may have been affected by seeing from atmospheric turbulence. Using Hinode /SOT-SP data spanning 2006–2013, we studied the effects of two spatial smoothing tests that imitate atmospheric seeing: noise reduction by ignoring pixel values weaker than the estimated noise threshold, and Gaussian spatial smoothing. We studied in detail the effects of atmospheric seeing on the helicity distributions across various field strengths for active regions (ARs) NOAA 11158 and NOAA 11243, in addition tomore » studying the average helicities of 179 ARs with and without smoothing. We found that, rather than changing trends in the helicity distributions, spatial smoothing modified existing trends by reducing random noise and by regressing outliers toward the mean, or removing them altogether. Furthermore, the average helicity parameter values of the 179 ARs did not conform to the hemisphere rule: independent of smoothing, the weak-vertical-field values tended to be negative in both hemispheres, and the strong-vertical-field values tended to be positive, especially in the south. We conclude that spatial smoothing does not significantly affect the overall statistics for space-based data, and thus seeing from atmospheric turbulence seems not to have significantly affected previous studies’ ground-based results on the hemisphere rule.« less

Helical bottleneck effect in 3D homogeneous isotropic turbulence

NASA Astrophysics Data System (ADS)

Stepanov, Rodion; Golbraikh, Ephim; Frick, Peter; Shestakov, Alexander

2018-02-01

We present the results of modelling the development of homogeneous and isotropic turbulence with a large-scale source of energy and a source of helicity distributed over scales. We use the shell model for numerical simulation of the turbulence at high Reynolds number. The results show that the helicity injection leads to a significant change in the behavior of the energy and helicity spectra in scales larger and smaller than the energy injection scale. We suggest the phenomenology for direct turbulent cascades with the helicity effect, which reduces the efficiency of the spectral energy transfer. Therefore the energy is accumulated and redistributed so that non-linear interactions will be sufficient to provide a constant energy flux. It can be interpreted as the ‘helical bottleneck effect’ which, depending on the parameters of the injection helicity, reminds one of the well-known bottleneck effect at the end of inertial range. Simulations which included the infrared part of the spectrum show that the inverse cascade hardly develops under distributed helicity forcing.

The global distribution of magnetic helicity in the solar corona

NASA Astrophysics Data System (ADS)

Yeates, A. R.; Hornig, G.

2016-10-01

By defining an appropriate field line helicity, we apply the powerful concept of magnetic helicity to the problem of global magnetic field evolution in the Sun's corona. As an ideal-magnetohydrodynamic invariant, the field line helicity is a meaningful measure of how magnetic helicity is distributed within the coronal volume. It may be interpreted, for each magnetic field line, as a magnetic flux linking with that field line. Using magneto-frictional simulations, we investigate how field line helicity evolves in the non-potential corona as a result of shearing by large-scale motions on the solar surface. On open magnetic field lines, the helicity injected by the Sun is largely output to the solar wind, provided that the coronal relaxation is sufficiently fast. But on closed magnetic field lines, helicity is able to build up. We find that the field line helicity is non-uniformly distributed, and is highly concentrated in twisted magnetic flux ropes. Eruption of these flux ropes is shown to lead to sudden bursts of helicity output, in contrast to the steady flux along the open magnetic field lines. Movies are available at http://www.aanda.org

Covariance Matrix for Helicity Couplings

DOE PAGES

Sadasivan, D.; Doring, M.

2018-04-06

In this paper, the helicity couplings at Q 2 = 0 for excited baryonic states have been determined in the past, but no information is available regarding their correlations that are relevant for comparison to theory. We present here our calculation of such correlations between the helicity couplings. Finally, they contain information for quantitative comparisons with theoretical values, they can be used to quantify the impact of polarization observables, and can help design new experiments.

New formulae for magnetic relative helicity and field line helicity

NASA Astrophysics Data System (ADS)

Aly, Jean-Jacques

2018-01-01

We consider a magnetic field {B} occupying the simply connected domain D and having all its field lines tied to the boundary S of D. We assume here that {B} has a simple topology, i.e., the mapping {M} from positive to negative polarity areas of S associating to each other the two footpoints of any magnetic line, is continuous. We first present new formulae for the helicity H of {B} relative to a reference field {{B}}r having the same normal component {B}n on S, and for its field line helicity h relative to a reference vector potential {{C}}r of {{B}}r. These formulae make immediately apparent the well known invariance of these quantities under all the ideal MHD deformations that preserve the positions of the footpoints on S. They express indeed h and H either in terms of {M} and {B}n, or in terms of the values on S of a pair of Euler potentials of {B}. We next show that, for a specific choice of {{C}}r, the field line helicity h of {B} fully characterizes the magnetic mapping {M} and then the topology of the lines. Finally, we give a formula that describes the rate of change of h in a situation where the plasma moves on the perfectly conducting boundary S without changing {B}n and/or non-ideal processes, described by an unspecified term {N} in Ohm’s law, are at work in some parts of D.

Unwinding motion of a twisted active region filament

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, X. L.; Xue, Z. K.; Kong, D. F.

To better understand the structures of active region filaments and the eruption process, we study an active region filament eruption in active region NOAA 11082 in detail on 2010 June 22. Before the filament eruption, the opposite unidirectional material flows appeared in succession along the spine of the filament. The rising of the filament triggered two B-class flares at the upper part of the filament. As the bright material was injected into the filament from the sites of the flares, the filament exhibited a rapid uplift accompanying the counterclockwise rotation of the filament body. From the expansion of the filament,more » we can see that the filament consisted of twisted magnetic field lines. The total twist of the filament is at least 5π obtained by using a time slice method. According to the morphology change during the filament eruption, it is found that the active region filament was a twisted flux rope and its unwinding motion was like a solar tornado. We also find that there was a continuous magnetic helicity injection before and during the filament eruption. It is confirmed that magnetic helicity can be transferred from the photosphere to the filament. Using the extrapolated potential fields, the average decay index of the background magnetic fields over the filament is 0.91. Consequently, these findings imply that the mechanism of solar filament eruption could be due to the kink instability and magnetic helicity accumulation.« less

Ion-cyclotron-frequency stabilization of internal kink mode and sawtooth oscillations in tokamaks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Litwin, C.

It is proposed that the ponderomotive force due to applied ion-cyclotron resonance-frequency waves can stabilize the internal kink mode in tokamaks. The sufficient stability criterion is derived and the necessary power estimated. It is concluded that at the rf power level, present in the Joint European Torus experiment, the ponderomotive force effects are significant and may be responsible for the modification of the sawtooth activity observed in recent experiments.

Scaling laws in decaying helical hydromagnetic turbulence

NASA Astrophysics Data System (ADS)

Christensson, M.; Hindmarsh, M.; Brandenburg, A.

2005-07-01

We study the evolution of growth and decay laws for the magnetic field coherence length ξ, energy E_M and magnetic helicity H in freely decaying 3D MHD turbulence. We show that with certain assumptions, self-similarity of the magnetic power spectrum alone implies that ξ σm t1/2. This in turn implies that magnetic helicity decays as Hσm t-2s, where s=(ξ_diff/ξH)2, in terms of ξ_diff, the diffusion length scale, and ξ_H, a length scale defined from the helicity power spectrum. The relative magnetic helicity remains constant, implying that the magnetic energy decays as E_M σm t-1/2-2s. The parameter s is inversely proportional to the magnetic Reynolds number Re_M, which is constant in the self-similar regime.

Isotropic Kink and Quasiparticle Excitations in the Three-Dimensional Perovskite Manganite La_{0.6}Sr_{0.4}MnO_{3}.

PubMed

Horiba, Koji; Kitamura, Miho; Yoshimatsu, Kohei; Minohara, Makoto; Sakai, Enju; Kobayashi, Masaki; Fujimori, Atsushi; Kumigashira, Hiroshi

2016-02-19

In order to reveal the many-body interactions in three-dimensional perovskite manganites that show colossal magnetoresistance, we performed an in situ angle-resolved photoemission spectroscopy on La_{0.6}Sr_{0.4}MnO_{3} and investigated the behavior of quasiparticles. We observed quasiparticle peaks near the Fermi momentum in both the electron and the hole bands, and clear kinks throughout the entire hole Fermi surface in the band dispersion. This isotropic behavior of quasiparticles and kinks suggests that polaronic quasiparticles produced by the coupling of electrons with Jahn-Teller phonons play an important role in the colossal magnetoresistance properties of the ferromagnetic metallic phase of three-dimensional manganites.

HELICITY CONSERVATION IN NONLINEAR MEAN-FIELD SOLAR DYNAMO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pipin, V. V.; Sokoloff, D. D.; Zhang, H.

It is believed that magnetic helicity conservation is an important constraint on large-scale astrophysical dynamos. In this paper, we study a mean-field solar dynamo model that employs two different formulations of the magnetic helicity conservation. In the first approach, the evolution of the averaged small-scale magnetic helicity is largely determined by the local induction effects due to the large-scale magnetic field, turbulent motions, and the turbulent diffusive loss of helicity. In this case, the dynamo model shows that the typical strength of the large-scale magnetic field generated by the dynamo is much smaller than the equipartition value for the magneticmore » Reynolds number 10{sup 6}. This is the so-called catastrophic quenching (CQ) phenomenon. In the literature, this is considered to be typical for various kinds of solar dynamo models, including the distributed-type and the Babcock-Leighton-type dynamos. The problem can be resolved by the second formulation, which is derived from the integral conservation of the total magnetic helicity. In this case, the dynamo model shows that magnetic helicity propagates with the dynamo wave from the bottom of the convection zone to the surface. This prevents CQ because of the local balance between the large-scale and small-scale magnetic helicities. Thus, the solar dynamo can operate in a wide range of magnetic Reynolds numbers up to 10{sup 6}.« less

Hydrodynamic studies of CNT nanofluids in helical coil heat exchanger

NASA Astrophysics Data System (ADS)

Babita; Sharma, S. K.; Mital Gupta, Shipra; Kumar, Arinjay

2017-12-01

Helical coils are extensively used in several industrial processes such as refrigeration systems, chemical reactors, recovery processes etc to accommodate a large heat transfer area within a smaller space. Nanofluids are getting great attention due to their enhanced heat transfer capability. In heat transfer equipments, pressure drop is one of the major factors of consideration for pumping power calculations. So, the present work is aimed to study hydrodynamics of CNT nanofluids in helical coils. In this study, pressure drop characteristics of CNT nanofluid flowing inside horizontal helical coils are investigated experimentally. The helical coil to tube diameter was varied from 11.71 to 27.34 keeping pitch of the helical coil constant. Double distilled water was used as basefluid. SDBS and GA surfactants were added to stablilize CNT nanofluids. The volumetric fraction of CNT nanofluid was varied from 0.003 vol% to 0.051 vol%. From the experimental data, it was analyzed that the friction factor in helical coils is greater than that of straight tubes. Concentration of CNT in nanofluids also has a significant influence on the pressure drop/friction factor of helical coils. At a constant concentration of CNT, decreasing helical coil to tube diameter from 27.24 to 11.71, fanning friction factor of helical coil; f c increases for a constant value of p/d t. This increase in the value of fanning friction factor can be attributed to the secondary flow of CNT nanofluid in helical coils.

Data on diverse roles of helix perturbations in membrane proteins.

PubMed

Shelar, Ashish; Bansal, Manju

2016-12-01

The various structural variations observed in TM helices of membrane proteins have been deconstructed into 9 distinct types of helix perturbations. These perturbations are defined by the deviation of TM helices from the predominantly observed linear α-helical conformation, to form 3 10 - and π-helices, as well as adopting curved and kinked geometries. The data presented here supplements the article 'Helix perturbations in Membrane Proteins Assist in Inter-helical Interactions and Optimal Helix Positioning in the Bilayer' (A. Shelar, M. Bansal, 2016) [1]. This data provides strong evidence for the role of various helix perturbations in influencing backbone torsion angles of helices, mediating inter-helical interactions, oligomer formation and accommodation of hydrophobic residues within the bilayer. The methodology used for creation of various datasets of membrane protein families (Sodium/Calcium exchanger and Heme Copper Oxidase) has also been mentioned.

The Helicity Injected Torus Program

NASA Astrophysics Data System (ADS)

Jarboe, T. R.; Nelson, B. A.; Jewell, P. D.; Liptac, J. E.; McCollam, K. J.; Raman, R.; Redd, A. J.; Rogers, J. A.; Sieck, P. E.; Shumlak, U.; Smith, R. J.; Nagata, M.; Uyama, T.

1999-11-01

The Helicity Injected Torus--II (HIT--II) spherical torus is capable of both Coaxial Helicity Injection (CHI) and transformer action current drive. HIT--II has a major radius R = 0.3, minor radius a = 0.2, aspect ratio A = R/a = 1.5, with an on axis magnetic field of up to Bo = 0.67 T. HIT--II provides equilibrium control, CHI flux boundary conditions, and transformer action using 28 poloidal field coils, using active flux feedback control. HIT--II has driven up to 200 kA of plasma current, using either CHI or transformer drive. An overview and recent results of the HIT--II program will be presented. The development of a locked-electron current drive model for HIT and HIT--II has led to the design of a constant inductive helicity injection method for spherical torii. This method is incorporated in the design of the Helicity Injected Torus -- Steady Inductive (HIT-- SI)(T.R. Jarboe, Fusion Technology, 36) (1), p. 85, 1999 experiment. HIT--SI can form a high-beta spheromak, a low aspect ratio RFP, or a spherical tokamak in a steady-state manner without using electrodes. The HIT--SI design and methodology will be presented.

Spin dynamics in helical molecules with nonlinear interactions

NASA Astrophysics Data System (ADS)

Díaz, E.; Albares, P.; Estévez, P. G.; Cerveró, J. M.; Gaul, C.; Diez, E.; Domínguez-Adame, F.

2018-04-01

It is widely admitted that the helical conformation of certain chiral molecules may induce a sizable spin selectivity observed in experiments. Spin selectivity arises as a result of the interplay between a helicity-induced spin–orbit coupling (SOC) and electric dipole fields in the molecule. From the theoretical point of view, different phenomena might affect the spin dynamics in helical molecules, such as quantum dephasing, dissipation and the role of metallic contacts. With a few exceptions, previous studies usually neglect the local deformation of the molecule about the carrier, but this assumption seems unrealistic to describe charge transport in molecular systems. We introduce an effective model describing the electron spin dynamics in a deformable helical molecule with weak SOC. We find that the electron–lattice interaction allows the formation of stable solitons such as bright solitons with well defined spin projection onto the molecule axis. We present a thorough study of these bright solitons and analyze their possible impact on the spin dynamics in deformable helical molecules.

Quantifying the Topology and Evolution of a Magnetic Flux Rope Associated with Multi-flare Activities

NASA Astrophysics Data System (ADS)

Yang, Kai; Guo, Yang; Ding, M. D.

2016-06-01

Magnetic flux ropes (MFRs) play an important role in solar activities. The quantitative assessment of the topology of an MFR and its evolution is crucial for a better understanding of the relationship between the MFR and associated activities. In this paper, we investigate the magnetic field of active region (AR) 12017 from 2014 March 28-29, during which time 12 flares were triggered by intermittent eruptions of a filament (either successful or confined). Using vector magnetic field data from the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, we calculate the magnetic energy and helicity injection in the AR, and extrapolate the 3D magnetic field with a nonlinear force-free field model. From the extrapolations, we find an MFR that is cospatial with the filament. We further determine the configuration of this MFR from the closed quasi-separatrix layer (QSL) around it. Then, we calculate the twist number and the magnetic helicity for the field lines composing the MFR. The results show that the closed QSL structure surrounding the MFR becomes smaller as a consequence of flare occurrence. We also find that the flares in our sample are mainly triggered by kink instability. Moreover, the twist number varies more sensitively than other parameters with the occurrence of flares.

Relieved kink effects in symmetrically graded In0.45Al0.55As/InxGa1-xAs metamorphic high-electron-mobility transistors

NASA Astrophysics Data System (ADS)

Lee, Ching-Sung; Liao, Chen-Hsian

2007-12-01

Kink effects in an In-rich InxGa1-xAs (x=0.53-0.63) linearly graded channel of an In0.45Al0.55As/InxGa1-xAs metamorphic high-electron-mobility transistor have been effectively relieved by depositing a high-barrier Ni /Au gate with the silicon nitride passivation. Complete physical investigations for the relieved kink effects have been made by comparing identical devices with/without a high-barrier Schottky gate or the surface passivation. After successfully suppressing the kink effects, the proposed device has shown a superior voltage gain of 173.8, low output conductance of 2.09mS/mm, and excellent power-added efficiency of 54.1% with high output power (power gain) of 14.87dBm (14.53dB). Improved linearity and excellent thermal threshold coefficient (∂Vth/∂T) of -0.14mV/K have also been achieved. The proposed design provides good potential for high-gain and high-linearity circuit applications.

Helical Antimicrobial Sulfono- {gamma} -AApeptides

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Yaqiong; Wu, Haifan; Teng, Peng

Host-defense peptides (HDPs) such as magainin 2 have emerged as potential therapeutic agents combating antibiotic resistance. Inspired by their structures and mechanism of action, herein we report the fi rst example of antimicrobial helical sulfono- γ - AApeptide foldamers. The lead molecule displays broad-spectrum and potent antimicrobial activity against multi-drug-resistant Gram- positive and Gram-negative bacterial pathogens. Time-kill studies and fl uorescence microscopy suggest that sulfono- γ -AApeptides eradicate bacteria by taking a mode of action analogous to that of HDPs. Clear structure - function relationships exist in the studied sequences. Longer sequences, presumably adopting more-de fi ned helical structures, aremore » more potent than shorter ones. Interestingly, the sequence with less helical propensity in solution could be more selective than the stronger helix-forming sequences. Moreover, this class of antimicrobial agents are resistant to proteolytic degradation. These results may lead to the development of a new class of antimicrobial foldamers combating emerging antibiotic-resistant pathogens.« less

Turbulent Helicity in the Atmospheric Boundary Layer

NASA Astrophysics Data System (ADS)

Chkhetiani, Otto G.; Kurgansky, Michael V.; Vazaeva, Natalia V.

2018-05-01

We consider the assumption postulated by Deusebio and Lindborg (J Fluid Mech 755:654-671, 2014) that the helicity injected into the Ekman boundary layer undergoes a cascade, with preservation of its sign (right- or alternatively left-handedness), which is a signature of the system rotation, from large to small scales, down to the Kolmogorov microscale of turbulence. At the same time, recent direct field measurements of turbulent helicity in the steppe region of southern Russia near Tsimlyansk Reservoir show the opposite sign of helicity from that expected. A possible explanation for this phenomenon may be the joint action of different scales of atmospheric flows within the boundary layer, including the sea-breeze circulation over the test site. In this regard, we consider a superposition of the classic Ekman spiral solution and Prandtl's jet-like slope-wind profile to describe the planetary boundary-layer wind structure. The latter solution mimics a hydrostatic shallow breeze circulation over a non-uniformly heated surface. A 180°-wide sector on the hodograph plane exists, within which the relative orientation of the Ekman and Prandtl velocity profiles favours the left rotation with height of the resulting wind velocity vector in the lowermost part of the boundary layer. This explains the negative (left-handed) helicity cascade toward small-scale turbulent motions, which agrees with the direct field measurements of turbulent helicity in Tsimlyansk. A simple turbulent relaxation model is proposed that explains the measured positive values of the relatively minor contribution to turbulent helicity from the vertical components of velocity and vorticity.

Propagation dynamics of Helical Hermite-Gaussian beams

NASA Astrophysics Data System (ADS)

López-Mariscal, Carlos; Gutiérrez-Vega, Julio C.

2007-09-01

We investigate theoretically and experimentally the propagation characteristics of the Helical Hermite-Gauss beams corresponding to the helical Ince-Gauss beams in the limit of infinite ellipticity. Particular attention is paid to the transverse irradiance structure, the orbital angular momentum density, and the vortex distribution.

Magnetic Helicities and Dynamo Action in Magneto-rotational Turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bodo, G.; Rossi, P.; Cattaneo, F.

We examine the relationship between magnetic flux generation, taken as an indicator of large-scale dynamo action, and magnetic helicity, computed as an integral over the dynamo volume, in a simple dynamo. We consider dynamo action driven by magneto-rotational turbulence (MRT) within the shearing-box approximation. We consider magnetically open boundary conditions that allow a flux of helicity in or out of the computational domain. We circumvent the problem of the lack of gauge invariance in open domains by choosing a particular gauge—the winding gauge—that provides a natural interpretation in terms of the average winding number of pairwise field lines. We usemore » this gauge precisely to define and measure the helicity and the helicity flux for several realizations of dynamo action. We find in these cases that the system as a whole does not break reflectional symmetry and that the total helicity remains small even in cases when substantial magnetic flux is generated. We find no particular connection between the generation of magnetic flux and the helicity or the helicity flux through the boundaries. We suggest that this result may be due to the essentially nonlinear nature of the dynamo processes in MRT.« less

Polymorphic transformation of helical flagella of bacteria

NASA Astrophysics Data System (ADS)

Lim, Sookkyung; Howard Berg Collaboration; William Ko Collaboration; Yongsam Kim Collaboration; Wanho Lee Collaboration; Charles Peskin Collaboration

2016-11-01

Bacteria such as E. coli swim in an aqueous environment by utilizing the rotation of flagellar motors and alternate two modes of motility, runs and tumbles. Runs are steady forward swimming driven by bundles of flagellar filaments whose motors are turning CCW; tumbles involve a reorientation of the direction of swimming triggered by motor reversals. During tumbling, the helical flagellum undergoes polymorphic transformations, which is a local change in helical pitch, helical radius, and handedness. In this work, we investigate the underlying mechanism of structural conformation and how this polymorphic transition plays a role in bacterial swimming. National Science Foundation.

Helicity of short E-R/K peptides.

PubMed

Sommese, Ruth F; Sivaramakrishnan, Sivaraj; Baldwin, Robert L; Spudich, James A

2010-10-01

Understanding the secondary structure of peptides is important in protein folding, enzyme function, and peptide-based drug design. Previous studies of synthetic Ala-based peptides (>12 a.a.) have demonstrated the role for charged side chain interactions involving Glu/Lys or Glu/Arg spaced three (i, i + 3) or four (i, i + 4) residues apart. The secondary structure of short peptides (<9 a.a.), however, has not been investigated. In this study, the effect of repetitive Glu/Lys or Glu/Arg side chain interactions, giving rise to E-R/K helices, on the helicity of short peptides was examined using circular dichroism. Short E-R/K-based peptides show significant helix content. Peptides containing one or more E-R interactions display greater helicity than those with similar E-K interactions. Significant helicity is achieved in Arg-based E-R/K peptides eight, six, and five amino acids long. In these short peptides, each additional i + 3 and i + 4 salt bridge has substantial contribution to fractional helix content. The E-R/K peptides exhibit a strongly linear melt curve indicative of noncooperative folding. The significant helicity of these short peptides with predictable dependence on number, position, and type of side chain interactions makes them an important consideration in peptide design.

Topological characteristics of helical repeat proteins.

PubMed

Groves, M R; Barford, D

1999-06-01

The recent elucidation of protein structures based upon repeating amino acid motifs, including the armadillo motif, the HEAT motif and tetratricopeptide repeats, reveals that they belong to the class of helical repeat proteins. These proteins share the common property of being assembled from tandem repeats of an alpha-helical structural unit, creating extended superhelical structures that are ideally suited to create a protein recognition interface.

Kink Waves in Non-isothermal Stratified Solar Waveguides: Effect of the External Magnetic Field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lopin, I.; Nagorny, I., E-mail: lopin78@mail.ru

We study the effect of an external magnetic field on the properties of kink waves, propagating along a thin non-isothermal stratified and diverging magnetic flux tube. A wave equation, governing the propagation of kink waves under the adopted model is derived. It is shown that the vertical gradient of temperature introduces a spatially local cut-off frequency ω {sub c}. The vertical distribution of the cut-off frequency is calculated for the reference VAL-C model of the solar atmosphere and for different values of a ratio of external to internal magnetic fields. The results show that the cut-off frequency is negative belowmore » the temperature minimum due to the negative temperature gradient. In the chromosphere the cut-off frequency at a given height is smaller for a stronger external magnetic field. For the appropriate range of a ratio B{sub e} / B{sub i}  ≈ 0–0.8, the cutoff lies in the range ω{sub c}  ≈ 0.003–0.010 s{sup −1} (periods 600 < P{sub c} < 2000 s). The estimate of the cut-off frequency in the transition region is provided as well. In the propagating wave regime, the effective wave energy flux in the non-isothermal diverging flux tubes is the same as in the straight and homogeneous cylindrical waveguides. The obtained wave equation in the limit β  = 0 is used to study the kink oscillations of non-isothermal coronal loops. It is found that the gradient of temperature along the coronal loops reduces the frequency ratio of the first overtone to the fundamental mode, i.e., ω{sub 2}/ ω{sub 1} < 2. This reduction grows for a larger ratio of temperature at the loop top to the temperature at the footpoints. Moreover, the effect of reduction is most pronounced for the steeper temperature profiles.« less

Numerical Simulations of Helicity Condensation in the Solar Corona

NASA Technical Reports Server (NTRS)

Zhao, L.; DeVore, C. R.; Antiochos, S. K.; Zurbuchen, T. H.

2015-01-01

The helicity condensation model has been proposed by Antiochos (2013) to explain the observed smoothness of coronal loops and the observed buildup of magnetic shear at filament channels. The basic hypothesis of the model is that magnetic reconnection in the corona causes the magnetic stress injected by photospheric motions to collect only at those special locations where prominences form. In this work we present the first detailed quantitative MHD simulations of the reconnection evolution proposed by the helicity condensation model. We use the well-known ansatz of modeling the closed corona as an initially uniform field between two horizontal photospheric plates. The system is driven by applying photospheric rotational flows that inject magnetic helicity into the system. The flows are confined to a finite region on the photosphere so as to mimic the finite flux system of, for example, a bipolar active region. The calculations demonstrate that, contrary to common belief, coronal loops having opposite helicity do not reconnect, whereas loops having the same sense of helicity do reconnect. Furthermore, we find that for a given amount of helicity injected into the corona, the evolution of the magnetic shear is insensitive to whether the pattern of driving photospheric motions is fixed or quasi-random. In all cases, the shear propagates via reconnection to the boundary of the flow region while the total magnetic helicity is conserved, as predicted by the model. We discuss the implications of our results for solar observations and for future, more realistic simulations of the helicity condensation process.

Plasmoids formation in a laboratory and large-volume flux closure during simulations of Coaxial Helicity Injection in NSTX-U

NASA Astrophysics Data System (ADS)

Ebrahimi, Fatima

2016-10-01

In NSTX-U, transient Coaxial Helicity Injection (CHI) is the primary method for current generation without reliance on the solenoid. A CHI discharge is generated by driving current along open field lines (the injector flux) that connect the inner and outer divertor plates on NSTX/NSTX-U, and has generated over 200 kA of toroidal current on closed flux surfaces in NSTX. Extrapolation of the concept to larger devices requires an improved understanding of the physics of flux closure and the governing parameters that maximizes the fraction of injected flux that is converted to useful closed flux. Here, through comprehensive resistive MHD NIMROD simulations conducted for the NSTX and NSTX-U geometries, two new major findings will be reported. First, formation of an elongated Sweet-Parker current sheet and a transition to plasmoid instability has for the first time been demonstrated by realistic global simulations. This is the first observation of plasmoid instability in a laboratory device configuration predicted by realistic MHD simulations and then supported by experimental camera images from NSTX. Second, simulations have now, for the first time, been able to show large fraction conversion of injected open flux to closed flux in the NSTX-U geometry. Consistent with the experiment, simulations also show that reconnection could occur at every stage of the helicity injection phase. The influence of 3D effects, and the parameter range that supports these important new findings is now being studied to understand the impact of toroidal magnetic field and the electron temperature, both of which are projected to increase in larger ST devices. Work supported by DOE DE-SC0010565.

Peptide tessellation yields micrometre-scale collagen triple helices

NASA Astrophysics Data System (ADS)

Tanrikulu, I. Caglar; Forticaux, Audrey; Jin, Song; Raines, Ronald T.

2016-11-01

Sticky-ended DNA duplexes can associate spontaneously into long double helices; however, such self-assembly is much less developed with proteins. Collagen is the most prevalent component of the extracellular matrix and a common clinical biomaterial. As for natural DNA, the ~103-residue triple helices (~300 nm) of natural collagen are recalcitrant to chemical synthesis. Here we show how the self-assembly of short collagen-mimetic peptides (CMPs) can enable the fabrication of synthetic collagen triple helices that are nearly a micrometre in length. Inspired by the mathematics of tessellations, we derive rules for the design of single CMPs that self-assemble into long triple helices with perfect symmetry. Sticky ends thus created are uniform across the assembly and drive its growth. Enacting this design yields individual triple helices that, in length, match or exceed those in natural collagen and are remarkably thermostable, despite the absence of higher-order association. The symmetric assembly of CMPs provides an enabling platform for the development of advanced materials for medicine and nanotechnology.

Computation of Relative Magnetic Helicity in Spherical Coordinates

NASA Astrophysics Data System (ADS)

Moraitis, Kostas; Pariat, Étienne; Savcheva, Antonia; Valori, Gherardo

2018-06-01

Magnetic helicity is a quantity of great importance in solar studies because it is conserved in ideal magnetohydrodynamics. While many methods for computing magnetic helicity in Cartesian finite volumes exist, in spherical coordinates, the natural coordinate system for solar applications, helicity is only treated approximately. We present here a method for properly computing the relative magnetic helicity in spherical geometry. The volumes considered are finite, of shell or wedge shape, and the three-dimensional magnetic field is considered to be fully known throughout the studied domain. Testing of the method with well-known, semi-analytic, force-free magnetic-field models reveals that it has excellent accuracy. Further application to a set of nonlinear force-free reconstructions of the magnetic field of solar active regions and comparison with an approximate method used in the past indicates that the proposed method can be significantly more accurate, thus making our method a promising tool in helicity studies that employ spherical geometry. Additionally, we determine and discuss the applicability range of the approximate method.

Accurate Cold-Test Model of Helical TWT Slow-Wave Circuits

NASA Technical Reports Server (NTRS)

Kory, Carol L.; Dayton, James A., Jr.

1997-01-01

Recently, a method has been established to accurately calculate cold-test data for helical slow-wave structures using the three-dimensional electromagnetic computer code, MAFIA. Cold-test parameters have been calculated for several helical traveling-wave tube (TWT) slow-wave circuits possessing various support rod configurations, and results are presented here showing excellent agreement with experiment. The helical models include tape thickness, dielectric support shapes and material properties consistent with the actual circuits. The cold-test data from this helical model can be used as input into large-signal helical TWT interaction codes making it possible, for the first time, to design a complete TWT via computer simulation.

Local magnetohydrodynamic instabilities and the wave-driven dynamo in accretion disks

NASA Technical Reports Server (NTRS)

Vishniac, Ethan T.; Diamond, Patrick

1992-01-01

We consider the consequences of magnetic buoyancy and the magnetic shearing instability (MSI) on the strength and organization of the magnetic field in a thin accretion disk. We discuss a model in which the wave-driven dynamo growth rate is balanced by the dissipative effects of the MSI. As in earlier work, the net helicity is due to small advective motions driven by nonlinear interactions between internal waves. Assuming a simple model of the internal wave spectrum generated from the primary m = 1 internal waves, we find that the magnetic energy density saturates at about (H/r) exp 4/3 times the local pressure (where H is the disk thickness and r is its radius). On very small scales the shearing instability will produce an isotropic fluctuating field. For a stationary disk this is equivalent to a dimensionless 'viscosity' of about (H/r) exp 4/3. The vertical and radial diffusion coefficients will be comparable to each other. Magnetic buoyancy will be largely suppressed by the turbulence due to the MSI. We present a rough estimate of its effects and find that it removes magnetic flux from the disk at a rate comparable to that caused by turbulent diffusion.

Resonant Drag Instabilities in protoplanetary disks: the streaming instability and new, faster-growing instabilities

NASA Astrophysics Data System (ADS)

Squire, Jonathan; Hopkins, Philip F.

2018-04-01

We identify and study a number of new, rapidly growing instabilities of dust grains in protoplanetary disks, which may be important for planetesimal formation. The study is based on the recognition that dust-gas mixtures are generically unstable to a Resonant Drag Instability (RDI), whenever the gas, absent dust, supports undamped linear modes. We show that the "streaming instability" is an RDI associated with epicyclic oscillations; this provides simple interpretations for its mechanisms and accurate analytic expressions for its growth rates and fastest-growing wavelengths. We extend this analysis to more general dust streaming motions and other waves, including buoyancy and magnetohydrodynamic oscillations, finding various new instabilities. Most importantly, we identify the disk "settling instability," which occurs as dust settles vertically into the midplane of a rotating disk. For small grains, this instability grows many orders of magnitude faster than the standard streaming instability, with a growth rate that is independent of grain size. Growth timescales for realistic dust-to-gas ratios are comparable to the disk orbital period, and the characteristic wavelengths are more than an order of magnitude larger than the streaming instability (allowing the instability to concentrate larger masses). This suggests that in the process of settling, dust will band into rings then filaments or clumps, potentially seeding dust traps, high-metallicity regions that in turn seed the streaming instability, or even overdensities that coagulate or directly collapse to planetesimals.

Does Hooke's law work in helical nanosprings?

PubMed

Ben, Sudong; Zhao, Junhua; Rabczuk, Timon

2015-08-28

Hooke's law is a principle of physics that states that the force needed to extend a spring by some distance is proportional to that distance. The law is always valid for an initial portion of the elastic range for nearly all helical macrosprings. Here we report the sharp nonlinear force-displacement relation of tightly wound helical carbon nanotubes at even small displacement via a molecular mechanics model. We demonstrate that the van der Waals (vdW) interaction between the intertube walls dominates the nonlinear relation based on our analytical expressions. This study provides physical insights into the origin of huge nonlinearity of the helical nanosprings.

Observation of self-excited acoustic vortices in defect-mediated dust acoustic wave turbulence.

PubMed

Tsai, Ya-Yi; I, Lin

2014-07-01

Using the self-excited dust acoustic wave as a platform, we demonstrate experimental observation of self-excited fluctuating acoustic vortex pairs with ± 1 topological charges through spontaneous waveform undulation in defect-mediated turbulence for three-dimensional traveling nonlinear longitudinal waves. The acoustic vortex pair has helical waveforms with opposite chirality around the low-density hole filament pair in xyt space (the xy plane is the plane normal to the wave propagation direction). It is generated through ruptures of sequential crest surfaces and reconnections with their trailing ruptured crest surfaces. The initial rupture is originated from the amplitude reduction induced by the formation of the kinked wave crest strip with strong stretching through the undulation instability. Increasing rupture causes the separation of the acoustic vortex pair after generation. A similar reverse process is followed for the acoustic vortex annihilating with the opposite-charged acoustic vortex from the same or another pair generation.

Maintaining ear aesthetics in helical rim reconstruction.

PubMed

Taylor, James M; Rajan, Ruchika; Dickson, John K; Mahajan, Ajay L

2014-03-01

Wedge resections of the helical rim may result in a significant deformity of the ear with the ear not only smaller but cupped and prominent too. Our technique involves resection of the wedge in the scaphal area without extending into the concha followed by advancement of the helical rim into the defect. This technique is most suitable for peripheral defects of the helical rim, in the middle third. Our modified surgical technique was applied to reconstruction of the pinna after resection of the tumor in 12 patients. Free cartilaginous helical rim, length of helical rim to be resected, and projection of the ear from the mastoid was measured. This was then compared with measurements after the operation, and the patient satisfaction assessed with a visual analog scale. The free cartilaginous rim was 91.67 ± 5.61 mm. Of this, 21.92 ± 3.78 mm was resected, which amounted to 23.84% ± 3.35% of the rim. Although this resulted in a mean increase in ear projection of 6.42 ± 1.68 mm, the aesthetic outcome was good (visual analog scale, 9.08 ± 0.9). This technique reduces cupping and does not make the ear as prominent as it may do after a conventional wedge resection and results in high patient satisfaction.

Fluid-Dynamic Optimal Design of Helical Vascular Graft for Stenotic Disturbed Flow

PubMed Central

Ha, Hojin; Hwang, Dongha; Choi, Woo-Rak; Baek, Jehyun; Lee, Sang Joon

2014-01-01

Although a helical configuration of a prosthetic vascular graft appears to be clinically beneficial in suppressing thrombosis and intimal hyperplasia, an optimization of a helical design has yet to be achieved because of the lack of a detailed understanding on hemodynamic features in helical grafts and their fluid dynamic influences. In the present study, the swirling flow in a helical graft was hypothesized to have beneficial influences on a disturbed flow structure such as stenotic flow. The characteristics of swirling flows generated by helical tubes with various helical pitches and curvatures were investigated to prove the hypothesis. The fluid dynamic influences of these helical tubes on stenotic flow were quantitatively analysed by using a particle image velocimetry technique. Results showed that the swirling intensity and helicity of the swirling flow have a linear relation with a modified Germano number (Gn*) of the helical pipe. In addition, the swirling flow generated a beneficial flow structure at the stenosis by reducing the size of the recirculation flow under steady and pulsatile flow conditions. Therefore, the beneficial effects of a helical graft on the flow field can be estimated by using the magnitude of Gn*. Finally, an optimized helical design with a maximum Gn* was suggested for the future design of a vascular graft. PMID:25360705

NUMERICAL SIMULATIONS OF HELICITY CONDENSATION IN THE SOLAR CORONA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, L.; Zurbuchen, T. H.; DeVore, C. R.

The helicity condensation model has been proposed by Antiochos to explain the observed smoothness of coronal loops and the observed buildup of magnetic shear at filament channels. The basic hypothesis of the model is that magnetic reconnection in the corona causes the magnetic stress injected by photospheric motions to collect only at those special locations where prominences are observed to form. In this work we present the first detailed quantitative MHD simulations of the reconnection evolution proposed by the helicity condensation model. We use the well-known ansatz of modeling the closed corona as an initially uniform field between two horizontalmore » photospheric plates. The system is driven by applying photospheric rotational flows that inject magnetic helicity into the corona. The flows are confined to a finite region on the photosphere so as to mimic the finite flux system of a bipolar active region, for example. The calculations demonstrate that, contrary to common belief, opposite helicity twists do not lead to significant reconnection in such a coronal system, whereas twists with the same sense of helicity do produce substantial reconnection. Furthermore, we find that for a given amount of helicity injected into the corona, the evolution of the magnetic shear is insensitive to whether the pattern of driving photospheric motions is fixed or quasi-random. In all cases, the shear propagates via reconnection to the boundary of the flow region while the total magnetic helicity is conserved, as predicted by the model. We discuss the implications of our results for solar observations and for future, more realistic simulations of the helicity condensation process.« less

Magnetic Helicity of Alfven Simple Waves

NASA Technical Reports Server (NTRS)

Webb, Gary M.; Hu, Q.; Dasgupta, B.; Zank, G. P.; Roberts, D.

2010-01-01

The magnetic helicity of fully nonlinear, multi-dimensional Alfven simple waves are investigated, by using relative helicity formulae and also by using an approach involving poloidal and toroidal decomposition of the magnetic field and magnetic vector potential. Different methods to calculate the magnetic vector potential are used, including the homotopy and Biot-Savart formulas. Two basic Alfven modes are identified: (a) the plane 1D Alfven simple wave given in standard texts, in which the Alfven wave propagates along the z-axis, with wave phase varphi=k_0(z-lambda t), where k_0 is the wave number and lambda is the group velocity of the wave, and (b)\\ the generalized Barnes (1976) simple Alfven wave in which the wave normal {bf n} moves in a circle in the xy-plane perpendicular to the mean field, which is directed along the z-axis. The plane Alfven wave (a) is analogous to the slab Alfven mode and the generalized Barnes solution (b) is analogous to the 2D mode in Alfvenic, incompressible turbulence. The helicity characteristics of these two basic Alfven modes are distinct. The helicity characteristics of more general multi-dimensional simple Alfven waves are also investigated. Applications to nonlinear Aifvenic fluctuations and structures observed in the solar wind are discussed.

A Prospective Evaluation of Helical Tomotherapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bauman, Glenn; Yartsev, Slav; Rodrigues, George

2007-06-01

Purpose: To report results from two clinical trials evaluating helical tomotherapy (HT). Methods and Materials: Patients were enrolled in one of two prospective trials of HT (one for palliative and one for radical treatment). Both an HT plan and a companion three-dimensional conformal radiotherapy (3D-CRT) plan were generated. Pretreatment megavoltage computed tomography was used for daily image guidance. Results: From September 2004 to January 2006, a total of 61 sites in 60 patients were treated. In all but one case, a clinically acceptable tomotherapy plan for treatment was generated. Helical tomotherapy plans were subjectively equivalent or superior to 3D-CRT inmore » 95% of plans. Helical tomotherapy was deemed equivalent or superior in two thirds of dose-volume point comparisons. In cases of inferiority, differences were either clinically insignificant and/or reflected deliberate tradeoffs to optimize the HT plan. Overall imaging and treatment time (median) was 27 min (range, 16-91 min). According to a patient questionnaire, 78% of patients were satisfied to very satisfied with the treatment process. Conclusions: Helical tomotherapy demonstrated clear advantages over conventional 3D-CRT in this diverse patient group. The prospective trials were helpful in deploying this technology in a busy clinical setting.« less

Biomimetic Hierarchical Assembly of Helical Supraparticles from Chiral Nanoparticles

DOE PAGES

Zhou, Yunlong; Marson, Ryan L.; van Anders, Greg; ...

2016-02-22

Chiroptical materials found in butterflies, beetles, stomatopod crustaceans, and other creatures are attributed to biocomposites with helical motifs and multiscale hierarchical organization. These structurally sophisticated materials self-assemble from primitive nanoscale building blocks, a process that is simpler and more energy efficient than many top-down methods currently used to produce similarly sized three-dimensional materials. In this paper, we report that molecular-scale chirality of a CdTe nanoparticle surface can be translated to nanoscale helical assemblies, leading to chiroptical activity in the visible electromagnetic range. Chiral CdTe nanoparticles coated with cysteine self-organize around Te cores to produce helical supraparticles. D-/L-Form of the aminomore » acid determines the dominant left/right helicity of the supraparticles. Coarse-grained molecular dynamics simulations with a helical pair-potential confirm the assembly mechanism and the origin of its enantioselectivity, providing a framework for engineering three-dimensional chiral materials by self-assembly. Finally, the helical supraparticles further self-organize into lamellar crystals with liquid crystalline order, demonstrating the possibility of hierarchical organization and with multiple structural motifs and length scales determined by molecular-scale asymmetry of nanoparticle interactions.« less

Reduced bispectrum seeded by helical primordial magnetic fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hortúa, Héctor Javier; Castañeda, Leonardo, E-mail: hjhortuao@unal.edu.co, E-mail: lcastanedac@unal.edu.co

In this paper, we investigate the effects of helical primordial magnetic fields (PMFs) on the cosmic microwave background (CMB) reduced bispectrum. We derive the full three-point statistics of helical magnetic fields and numerically calculate the even contribution in the collinear configuration. We then numerically compute the CMB reduced bispectrum induced by passive and compensated PMF modes on large angular scales. There is a negative signal on the bispectrum due to the helical terms of the fields and we also observe that the biggest contribution to the bispectrum comes from the non-zero IR cut-off for causal fields, unlike the two-point correlationmore » case. For negative spectral indices, the reduced bispectrum is enhanced by the passive modes. This gives a lower value of the upper limit for the mean amplitude of the magnetic field on a given characteristic scale. However, high values of IR cut-off in the bispectrum, and the helical terms of the magnetic field relaxes this bound. This demonstrates the importance of the IR cut-off and helicity in the study of the nature of PMFs from CMB observations.« less

Computational design of water-soluble α-helical barrels.

PubMed

Thomson, Andrew R; Wood, Christopher W; Burton, Antony J; Bartlett, Gail J; Sessions, Richard B; Brady, R Leo; Woolfson, Derek N

2014-10-24

The design of protein sequences that fold into prescribed de novo structures is challenging. General solutions to this problem require geometric descriptions of protein folds and methods to fit sequences to these. The α-helical coiled coils present a promising class of protein for this and offer considerable scope for exploring hitherto unseen structures. For α-helical barrels, which have more than four helices and accessible central channels, many of the possible structures remain unobserved. Here, we combine geometrical considerations, knowledge-based scoring, and atomistic modeling to facilitate the design of new channel-containing α-helical barrels. X-ray crystal structures of the resulting designs match predicted in silico models. Furthermore, the observed channels are chemically defined and have diameters related to oligomer state, which present routes to design protein function. Copyright © 2014, American Association for the Advancement of Science.

An Amino Acid Packing Code for α-helical Structure and Protein Design

PubMed Central

Joo, Hyun; Chavan, Archana G.; Phan, Jamie; Day, Ryan; Tsai, Jerry

2012-01-01

This work demonstrates that all packing in α-helices can be simplified to repetitive patterns of a single motif: the knob-socket. Using the precision of Voronoi Polyhedra/Deluaney Tessellations to identify contacts, the knob-socket is a 4 residue tetrahedral motif: a knob residue on one α-helix packs into the 3 residue socket on another α-helix. The principle of the knob-socket model relates the packing between levels of protein structure: the intra-helical packing arrangements within secondary structure that permit inter-helix tertiary packing interactions. Within an α-helix, the 3 residue sockets arrange residues into a uniform packing lattice. Inter-helix packing results from a definable pattern of interdigitated knob-socket motifs between 2 α-helices. Furthermore, the knob-socket model classifies 3 types of sockets: 1) free: favoring only intra-helical packing, 2) filled: favoring inter-helical interactions and 3) non: disfavoring α-helical structure. The amino acid propensities in these 3 socket classes essentially represent an amino acid code for structure in α-helical packing. Using this code, a novel yet straightforward approach for the design of α-helical structure was used to validate the knob-socket model. Unique sequences for 3 peptides were created to produce a predicted amount of α-helical structure: mostly helical, some helical, and no-helix. These 3 peptides were synthesized and helical content assessed using CD spectroscopy. The measured α-helicity of each peptide was consistent with the expected predictions. These results and analysis demonstrate that the knob-socket motif functions as the basic unit of packing and presents an intuitive tool to decipher the rules governing packing in protein structure. PMID:22426125

Unfolding of a branched double-helical DNA three-way junction with triple-helical ends.

PubMed

Hüsler, P L; Klump, H H

1994-08-15

We have designed three oligonucleotides (33 mers) which when mixed in a 1:1:1 ratio form double-helical DNA three-way junctions with triple helical ends in the pH interval pH 4 to 5.5. The triplex to coil transition is initiated by raising the temperature and was recorded by temperature gradient gel electrophoresis, uv melting, and differential scanning calorimetry. The transitions can be deconvoluted into three subtransitions representing the independent thermal denaturation of each of the arms. We have proposed a model for the unfolding pathway and give the thermodynamic parameters for each step as calculated using the formalism outlined in the appendix.

Helicity in the dynamic magnetotail

NASA Astrophysics Data System (ADS)

Buchert, Stephan

Observations of substorms typically feature a clear azimuthal or east-west asymmetry which has been described in expressions like for example westward-traveling surge. The origin of this asymmetry is not clear. Candidates are the Hall effect, either in the ionosphere, or in magnetic reconnection, and self-induction when Hall currents change in time. The magnetic helicity in the tail measured by the Cluster satellites shows a clear preference during dynamic events, that we have studied. We discuss possible causes of this non-zero helicity and whether it is related to east-west assymmetric tail dynamics.

A Combined Study of Photospheric Magnetic and Current Helicities and Subsurface Kinetic Helicities of Solar Active Regions during 2006-2012

NASA Astrophysics Data System (ADS)

Seligman, Darryl; Petrie, G.; Komm, R.

2014-01-01

We compare the average photospheric current helicity H_c, photospheric twist parameter α (a well-known proxy for the full relative magnetic helicity), and subsurface kinetic helicity K_h for 128 active regions observed between 2006-2012. We use 1436 Hinode photospheric vector magnetograms and subsurface fluid velocity data from GONG Dopplergrams. We find a significant hemispheric bias in all three parameters. The K_h parameter is preferentially positive/negative in the southern/northern hemisphere. The H_c and α parameters have the same bias for strong fields |{B}|>1000 G). We examine the temporal variability of each parameter for each active region and identify a significant subset of regions whose three helicity parameters all exhibit clear increasing or decreasing trends. The temporal profiles of these regions have the same bias: positive/negative helicity in the northern/southern hemisphere. The results are consistent with Longcope et al.'s Σ-effect. This work is carried out through the National Solar Observatory Research Experiences for Undergraduate (REU) site program, which is co-funded by the Department of Defense in partnership with the NSF REU Program. The National Solar Observatory is operated by the Association of Universities for Research in Astronomy, Inc. (AURA) under cooperative agreement with the National Science Foundation.

Kinetic-scale flux rope reconnection in periodic and line-tied geometries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sauppe, J. P.; Daughton, W.

Here, the collisionless reconnection of two parallel flux ropes driven by both the coalescence and kink instabilities is examined using fully kinetic simulations in periodic and line-tied geometries. The three-dimensional reconnection rate is computed from the maximum of the quasi-potential, Ξ≡-∫E·dℓ, where the integral of the electric field is taken along the magnetic field lines across the system. In periodic simulations in which the kink mode is nearly suppressed, reconnection is driven by the coalescence instability, and the peak rate is within 3%–8% of comparable 2D simulations. When a strong kink growth is observed, the peak reconnection rate drops bymore » 10%–25%, and there is a larger drop for lower guide field. With line-tied boundary conditions, the kink instability plays a key role in allowing the flux ropes to interact and partially reconnect. In this limit, the field lines with maximum quasi-potential are associated with a quasi-separatrix layer, and the electric field along these special field lines is supported predominantly by the divergence of the electron pressure tensor. Both of these features, along with the observed reconnection rate, are consistent with recent laboratory experiments on kinetic-scale flux ropes. In kinetic simulations, the non-gyrotropic pressure tensor terms contribute significantly more to the reconnecting electric field than do the gyrotropic terms, while contributions from the electron inertia are significant for field lines adjacent to the quasi-separatrix layer.« less

Kinetic-scale flux rope reconnection in periodic and line-tied geometries

DOE PAGES

Sauppe, J. P.; Daughton, W.

2017-12-28

Here, the collisionless reconnection of two parallel flux ropes driven by both the coalescence and kink instabilities is examined using fully kinetic simulations in periodic and line-tied geometries. The three-dimensional reconnection rate is computed from the maximum of the quasi-potential, Ξ≡-∫E·dℓ, where the integral of the electric field is taken along the magnetic field lines across the system. In periodic simulations in which the kink mode is nearly suppressed, reconnection is driven by the coalescence instability, and the peak rate is within 3%–8% of comparable 2D simulations. When a strong kink growth is observed, the peak reconnection rate drops bymore » 10%–25%, and there is a larger drop for lower guide field. With line-tied boundary conditions, the kink instability plays a key role in allowing the flux ropes to interact and partially reconnect. In this limit, the field lines with maximum quasi-potential are associated with a quasi-separatrix layer, and the electric field along these special field lines is supported predominantly by the divergence of the electron pressure tensor. Both of these features, along with the observed reconnection rate, are consistent with recent laboratory experiments on kinetic-scale flux ropes. In kinetic simulations, the non-gyrotropic pressure tensor terms contribute significantly more to the reconnecting electric field than do the gyrotropic terms, while contributions from the electron inertia are significant for field lines adjacent to the quasi-separatrix layer.« less

Scale Dependence of Magnetic Helicity in the Solar Wind

NASA Technical Reports Server (NTRS)

Brandenburg, Axel; Subramanian, Kandaswamy; Balogh, Andre; Goldstein, Melvyn L.

2011-01-01

We determine the magnetic helicity, along with the magnetic energy, at high latitudes using data from the Ulysses mission. The data set spans the time period from 1993 to 1996. The basic assumption of the analysis is that the solar wind is homogeneous. Because the solar wind speed is high, we follow the approach first pioneered by Matthaeus et al. by which, under the assumption of spatial homogeneity, one can use Fourier transforms of the magnetic field time series to construct one-dimensional spectra of the magnetic energy and magnetic helicity under the assumption that the Taylor frozen-in-flow hypothesis is valid. That is a well-satisfied assumption for the data used in this study. The magnetic helicity derives from the skew-symmetric terms of the three-dimensional magnetic correlation tensor, while the symmetric terms of the tensor are used to determine the magnetic energy spectrum. Our results show a sign change of magnetic helicity at wavenumber k approximately equal to 2AU(sup -1) (or frequency nu approximately equal to 2 microHz) at distances below 2.8AU and at k approximately equal to 30AU(sup -1) (or nu approximately equal to 25 microHz) at larger distances. At small scales the magnetic helicity is positive at northern heliographic latitudes and negative at southern latitudes. The positive magnetic helicity at small scales is argued to be the result of turbulent diffusion reversing the sign relative to what is seen at small scales at the solar surface. Furthermore, the magnetic helicity declines toward solar minimum in 1996. The magnetic helicity flux integrated separately over one hemisphere amounts to about 10(sup 45) Mx(sup 2) cycle(sup -1) at large scales and to a three times lower value at smaller scales.

Two-phase pressure drop in a helical coil flow boiling system

NASA Astrophysics Data System (ADS)

Hardik, B. K.; Prabhu, S. V.

2018-05-01

The objective of the present work is to study the two-phase pressure drop in helical coils. Literature on the two-phase pressure drop in a helical coil suggests the complexity in flow boiling inside a helical coil due to secondary flow. Most of correlations reported in the literature on the two-phase pressure drop in a helical coil are limited to a specific operating range. No general correlation is available for a helical coil which is applicable for all fluids. In the present study, an experimental databank collected containing a total of 832 data points includes the data from the present study and from the literature. The data includes diabatic pressure drop of two fluids namely water and R123. Data covers a range of parameters namely a mass flux of 120-2058 kg/m2 s, a heat flux of 18-2831 kW/m2, an exit quality of 0.03-1, a density ratio of 32-1404 and a coil to tube diameter ratio of 14-58. The databank is compared with eighteen empirical correlations which include well referred correlations of straight tubes and the available correlations of helical coils. The straight tube correlations are not working well for the present data set. The helical coil correlations work reasonably well for the present databank. A correlation is suggested to predict the two-phase pressure drop in helical coils. The present study suggests that the influence of a helical coil is completely included in the single phase pressure drop correlation for helical coils.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, X. L.; Xue, Z. K.; Ma, L.

Kink instability is a possible mechanism for solar filament eruption. However, it is very difficult to directly measure the twist of the solar filament from observation. In this paper, we measured the twist of a solar filament by analyzing its leg rotation. An inverse S-shaped filament in the active region NOAA 11485 was observed by the Atmospheric Imaging Assembly of the Solar Dynamics Observatory on 2012 May 22. During its eruption, the leg of the filament exhibited a significant rotation motion. The 304 Å images were used to uncurl the circles, the centers of which are the axis of themore » filament's leg. The result shows that the leg of the filament rotated up to about 510° (about 2.83π) around the axis of the filament within 23 minutes. The maximal rotation speed reached 100 degrees/minute (about 379.9 km s{sup –1} at radius 18''), which is the fastest rotation speed reported. We also calculated the decay index along the polarity inversion line in this active region and found that the decline of the overlying field with height is not fast enough to trigger the torus instability. According to the kink instability condition, this indicates that the kink instability is the trigger mechanism for the solar filament eruption.« less

PRODUCTIVITY OF SOLAR FLARES AND MAGNETIC HELICITY INJECTION IN ACTIVE REGIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, Sung-hong; Wang Haimin; Chae, Jongchul, E-mail: sp295@njit.ed

The main objective of this study is to better understand how magnetic helicity injection in an active region (AR) is related to the occurrence and intensity of solar flares. We therefore investigate the magnetic helicity injection rate and unsigned magnetic flux, as a reference. In total, 378 ARs are analyzed using SOHO/MDI magnetograms. The 24 hr averaged helicity injection rate and unsigned magnetic flux are compared with the flare index and the flare-productive probability in the next 24 hr following a measurement. In addition, we study the variation of helicity over a span of several days around the times ofmore » the 19 flares above M5.0 which occurred in selected strong flare-productive ARs. The major findings of this study are as follows: (1) for a sub-sample of 91 large ARs with unsigned magnetic fluxes in the range from (3-5) x 10{sup 22} Mx, there is a difference in the magnetic helicity injection rate between flaring ARs and non-flaring ARs by a factor of 2; (2) the GOES C-flare-productive probability as a function of helicity injection displays a sharp boundary between flare-productive ARs and flare-quiet ones; (3) the history of helicity injection before all the 19 major flares displayed a common characteristic: a significant helicity accumulation of (3-45) x 10{sup 42} Mx{sup 2} during a phase of monotonically increasing helicity over 0.5-2 days. Our results support the notion that helicity injection is important in flares, but it is not effective to use it alone for the purpose of flare forecast. It is necessary to find a way to better characterize the time history of helicity injection as well as its spatial distribution inside ARs.« less

Productivity of Solar Flares and Magnetic Helicity Injection in Active Regions

NASA Astrophysics Data System (ADS)

Park, Sung-hong; Chae, Jongchul; Wang, Haimin

2010-07-01

The main objective of this study is to better understand how magnetic helicity injection in an active region (AR) is related to the occurrence and intensity of solar flares. We therefore investigate the magnetic helicity injection rate and unsigned magnetic flux, as a reference. In total, 378 ARs are analyzed using SOHO/MDI magnetograms. The 24 hr averaged helicity injection rate and unsigned magnetic flux are compared with the flare index and the flare-productive probability in the next 24 hr following a measurement. In addition, we study the variation of helicity over a span of several days around the times of the 19 flares above M5.0 which occurred in selected strong flare-productive ARs. The major findings of this study are as follows: (1) for a sub-sample of 91 large ARs with unsigned magnetic fluxes in the range from (3-5) × 1022 Mx, there is a difference in the magnetic helicity injection rate between flaring ARs and non-flaring ARs by a factor of 2; (2) the GOES C-flare-productive probability as a function of helicity injection displays a sharp boundary between flare-productive ARs and flare-quiet ones; (3) the history of helicity injection before all the 19 major flares displayed a common characteristic: a significant helicity accumulation of (3-45) × 1042 Mx2 during a phase of monotonically increasing helicity over 0.5-2 days. Our results support the notion that helicity injection is important in flares, but it is not effective to use it alone for the purpose of flare forecast. It is necessary to find a way to better characterize the time history of helicity injection as well as its spatial distribution inside ARs.

Geometry Dynamics of α-Helices in Different Class I Major Histocompatibility Complexes

PubMed Central

Karch, Rudolf; Schreiner, Wolfgang

2015-01-01

MHC α-helices form the antigen-binding cleft and are of particular interest for immunological reactions. To monitor these helices in molecular dynamics simulations, we applied a parsimonious fragment-fitting method to trace the axes of the α-helices. Each resulting axis was fitted by polynomials in a least-squares sense and the curvature integral was computed. To find the appropriate polynomial degree, the method was tested on two artificially modelled helices, one performing a bending movement and another a hinge movement. We found that second-order polynomials retrieve predefined parameters of helical motion with minimal relative error. From MD simulations we selected those parts of α-helices that were stable and also close to the TCR/MHC interface. We monitored the curvature integral, generated a ruled surface between the two MHC α-helices, and computed interhelical area and surface torsion, as they changed over time. We found that MHC α-helices undergo rapid but small changes in conformation. The curvature integral of helices proved to be a sensitive measure, which was closely related to changes in shape over time as confirmed by RMSD analysis. We speculate that small changes in the conformation of individual MHC α-helices are part of the intrinsic dynamics induced by engagement with the TCR. PMID:26649324

The molecular kink paradigm for rubber elasticity: Numerical simulations of explicit polyisoprene networks at low to moderate tensile strains

NASA Astrophysics Data System (ADS)

Hanson, David E.

2011-08-01

Based on recent molecular dynamics and ab initio simulations of small isoprene molecules, we propose a new ansatz for rubber elasticity. We envision a network chain as a series of independent molecular kinks, each comprised of a small number of backbone units, and the strain as being imposed along the contour of the chain. We treat chain extension in three distinct force regimes: (Ia) near zero strain, where we assume that the chain is extended within a well defined tube, with all of the kinks participating simultaneously as entropic elastic springs, (II) when the chain becomes sensibly straight, giving rise to a purely enthalpic stretching force (until bond rupture occurs) and, (Ib) a linear entropic regime, between regimes Ia and II, in which a force limit is imposed by tube deformation. In this intermediate regime, the molecular kinks are assumed to be gradually straightened until the chain becomes a series of straight segments between entanglements. We assume that there exists a tube deformation tension limit that is inversely proportional to the chain path tortuosity. Here we report the results of numerical simulations of explicit three-dimensional, periodic, polyisoprene networks, using these extension-only force models. At low strain, crosslink nodes are moved affinely, up to an arbitrary node force limit. Above this limit, non-affine motion of the nodes is allowed to relax unbalanced chain forces. Our simulation results are in good agreement with tensile stress vs. strain experiments.

The molecular kink paradigm for rubber elasticity: numerical simulations of explicit polyisoprene networks at low to moderate tensile strains.

PubMed

Hanson, David E

2011-08-07

Based on recent molecular dynamics and ab initio simulations of small isoprene molecules, we propose a new ansatz for rubber elasticity. We envision a network chain as a series of independent molecular kinks, each comprised of a small number of backbone units, and the strain as being imposed along the contour of the chain. We treat chain extension in three distinct force regimes: (Ia) near zero strain, where we assume that the chain is extended within a well defined tube, with all of the kinks participating simultaneously as entropic elastic springs, (II) when the chain becomes sensibly straight, giving rise to a purely enthalpic stretching force (until bond rupture occurs) and, (Ib) a linear entropic regime, between regimes Ia and II, in which a force limit is imposed by tube deformation. In this intermediate regime, the molecular kinks are assumed to be gradually straightened until the chain becomes a series of straight segments between entanglements. We assume that there exists a tube deformation tension limit that is inversely proportional to the chain path tortuosity. Here we report the results of numerical simulations of explicit three-dimensional, periodic, polyisoprene networks, using these extension-only force models. At low strain, crosslink nodes are moved affinely, up to an arbitrary node force limit. Above this limit, non-affine motion of the nodes is allowed to relax unbalanced chain forces. Our simulation results are in good agreement with tensile stress vs. strain experiments.

Soliton and kink jams in traffic flow with open boundaries.

PubMed

Muramatsu, M; Nagatani, T

1999-07-01

Soliton density wave is investigated numerically and analytically in the optimal velocity model (a car-following model) of a one-dimensional traffic flow with open boundaries. Soliton density wave is distinguished from the kink density wave. It is shown that the soliton density wave appears only at the threshold of occurrence of traffic jams. The Korteweg-de Vries (KdV) equation is derived from the optimal velocity model by the use of the nonlinear analysis. It is found that the traffic soliton appears only near the neutral stability line. The soliton solution is analytically obtained from the perturbed KdV equation. It is shown that the soliton solution obtained from the nonlinear analysis is consistent with that of the numerical simulation.

Helicity dynamics in stratified turbulence in the absence of forcing.

PubMed

Rorai, C; Rosenberg, D; Pouquet, A; Mininni, P D

2013-06-01

A numerical study of decaying stably stratified flows is performed. Relatively high stratification (Froude number ≈10(-2)-10(-1)) and moderate Reynolds (Re) numbers (Re≈ 3-6×10(3)) are considered and a particular emphasis is placed on the role of helicity (velocity-vorticity correlations), which is not an invariant of the nondissipative equations. The problem is tackled by integrating the Boussinesq equations in a periodic cubical domain using different initial conditions: a nonhelical Taylor-Green (TG) flow, a fully helical Beltrami [Arnold-Beltrami-Childress (ABC)] flow, and random flows with a tunable helicity. We show that for stratified ABC flows helicity undergoes a substantially slower decay than for unstratified ABC flows. This fact is likely associated to the combined effect of stratification and large-scale coherent structures. Indeed, when the latter are missing, as in random flows, helicity is rapidly destroyed by the onset of gravitational waves. A type of large-scale dissipative "cyclostrophic" balance can be invoked to explain this behavior. No production of helicity is observed, contrary to the case of rotating and stratified flows. When helicity survives in the system, it strongly affects the temporal energy decay and the energy distribution among Fourier modes. We discover in fact that the decay rate of energy for stratified helical flows is much slower than for stratified nonhelical flows and can be considered with a phenomenological model in a way similar to what is done for unstratified rotating flows. We also show that helicity, when strong, has a measurable effect on the Fourier spectra, in particular at scales larger than the buoyancy scale, for which it displays a rather flat scaling associated with vertical shear, as observed in the planetary boundary layer.

Comparison of magnetic helicity close to the sun and in magnetic clouds

NASA Astrophysics Data System (ADS)

Rust, D.

Magnetic helicity is present in the solar atmosphere - as inferred from vector magnetograph measurements, solar filaments, S-shaped coronal structures known as sigmoids, and sunspot whorls. I will survey the possible solar sources of this magnetic helicity. Included are fieldline footpoint motions, effects of Coriolis forces, effects of convection, shear associated with differential rotation, and, of course, the internal dynamo. Besides the survey of possible local mechanisms for helicity generation, I will consider the global view of the flow of helicity from the sun into interplanetary space. The principal agents by which the sun sheds helicity are coronal mass ejections (CMEs). They are often associated with interplanetary magnetic clouds (MCs), whose fields are regularly probed with sensitive spacecraft magnetometers. MCs yield more direct measurements of helicity. They show that each MC carries helicity away from the sun. A major issue in solar-heliospheric research is whether the amount of helicity that MCs carry away in a solar cycle can be accounted for by the helicity generation mechanisms proposed so far. The NASA Solar and Heliospheric Physics Program supports this work under grants NAG5- 7921 and NAG 5-11584.

Manipulation of wavefront using helical metamaterials.

PubMed

Yang, Zhenyu; Wang, Zhaokun; Tao, Huan; Zhao, Ming

2016-08-08

Helical metamaterials, a kind of 3-dimensional structure, has relatively strong coupling effect among the helical nano-wires. Therefore, it is expected to be a good candidate for generating phase shift and controlling wavefront with high efficiency. In this paper, using the finite-difference time-domain (FDTD) method, we studied the phase shift properties in the helical metamaterials. It is found that the phase shift occurs for both transmitted and reflected light waves. And the maximum of reflection coefficients can reach over 60%. In addition, the phase shift (φ) is dispersionless in the range of 600 nm to 860 nm, that is, it is only dominated by the initial angle (θ) of the helix. The relationship between them is φ = ± 2θ. Using Jones calculus we give a further explanation for these properties. Finally, by arranging the helixes in an array with a constant phase gradient, the phenomenon of anomalous refraction was also observed in a broad wavelength range.

Bidirectional helical motility of cytoplasmic dynein around microtubules

PubMed Central

Can, Sinan; Dewitt, Mark A; Yildiz, Ahmet

2014-01-01

Cytoplasmic dynein is a molecular motor responsible for minus-end-directed cargo transport along microtubules (MTs). Dynein motility has previously been studied on surface-immobilized MTs in vitro, which constrains the motors to move in two dimensions. In this study, we explored dynein motility in three dimensions using an MT bridge assay. We found that dynein moves in a helical trajectory around the MT, demonstrating that it generates torque during cargo transport. Unlike other cytoskeletal motors that produce torque in a specific direction, dynein generates torque in either direction, resulting in bidirectional helical motility. Dynein has a net preference to move along a right-handed helical path, suggesting that the heads tend to bind to the closest tubulin binding site in the forward direction when taking sideways steps. This bidirectional helical motility may allow dynein to avoid roadblocks in dense cytoplasmic environments during cargo transport. DOI: http://dx.doi.org/10.7554/eLife.03205.001 PMID:25069614

Hierarchical Helical Order in the Twisted Growth of Plant Organs

NASA Astrophysics Data System (ADS)

Wada, Hirofumi

2012-09-01

The molecular and cellular basis of left-right asymmetry in plant morphogenesis is a fundamental issue in biology. A rapidly elongating root or hypocotyl of twisting mutants of Arabidopsis thaliana exhibits a helical growth with a handedness opposite to that of the underlying cortical microtubule arrays in epidermal cells. However, how such a hierarchical helical order emerges is currently unknown. We propose a model for investigating macroscopic chiral asymmetry in Arabidopsis mutants. Our elastic model suggests that the helical pattern observed is a direct consequence of the simultaneous presence of anisotropic growth and tilting of cortical microtubule arrays. We predict that the root helical pitch angle is a function of the microtubule helical angle and elastic moduli of the tissues. The proposed model is versatile and is potentially important for other biological systems ranging from protein fibrous structures to tree trunks.

Hierarchically arranged helical fibre actuators driven by solvents and vapours.

PubMed

Chen, Peining; Xu, Yifan; He, Sisi; Sun, Xuemei; Pan, Shaowu; Deng, Jue; Chen, Daoyong; Peng, Huisheng

2015-12-01

Mechanical responsiveness in many plants is produced by helical organizations of cellulose microfibrils. However, simple mimicry of these naturally occurring helical structures does not produce artificial materials with the desired tunable actuations. Here, we show that actuating fibres that respond to solvent and vapour stimuli can be created through the hierarchical and helical assembly of aligned carbon nanotubes. Primary fibres consisting of helical assemblies of multiwalled carbon nanotubes are twisted together to form the helical actuating fibres. The nanoscale gaps between the nanotubes and micrometre-scale gaps among the primary fibres contribute to the rapid response and large actuation stroke of the actuating fibres. The compact coils allow the actuating fibre to rotate reversibly. We show that these fibres, which are lightweight, flexible and strong, are suitable for a variety of applications such as energy-harvesting generators, deformable sensing springs and smart textiles.

Hierarchically arranged helical fibre actuators driven by solvents and vapours

NASA Astrophysics Data System (ADS)

Chen, Peining; Xu, Yifan; He, Sisi; Sun, Xuemei; Pan, Shaowu; Deng, Jue; Chen, Daoyong; Peng, Huisheng

2015-12-01

Mechanical responsiveness in many plants is produced by helical organizations of cellulose microfibrils. However, simple mimicry of these naturally occurring helical structures does not produce artificial materials with the desired tunable actuations. Here, we show that actuating fibres that respond to solvent and vapour stimuli can be created through the hierarchical and helical assembly of aligned carbon nanotubes. Primary fibres consisting of helical assemblies of multiwalled carbon nanotubes are twisted together to form the helical actuating fibres. The nanoscale gaps between the nanotubes and micrometre-scale gaps among the primary fibres contribute to the rapid response and large actuation stroke of the actuating fibres. The compact coils allow the actuating fibre to rotate reversibly. We show that these fibres, which are lightweight, flexible and strong, are suitable for a variety of applications such as energy-harvesting generators, deformable sensing springs and smart textiles.

76 FR 57075 - Helical Spring Lock Washers From China and Taiwan

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-15

... INTERNATIONAL TRADE COMMISSION [Investigation Nos. 731-TA-624-625; Third Review] Helical Spring... duty orders on helical spring lock washers from China and Taiwan. AGENCY: United States International...) to determine whether revocation of the antidumping duty orders on helical spring lock washers from...

Helicity and nuclear β decay correlations

NASA Astrophysics Data System (ADS)

Hong, Ran; Sternberg, Matthew G.; Garcia, Alejandro

2017-01-01

We present simple derivations of nuclear β-decay correlations with an emphasis on the special role of helicity. This topic provides a good opportunity to teach students about helicity and chirality in particle physics with exercises that use simple aspects of quantum mechanics. In addition, this paper serves as an introduction to nuclear β-decay correlations from both a theoretical and experimental perspective. This article can be used to introduce students to ongoing experiments searching for hints of new physics in the low-energy precision frontier.

Effects of Helicity on Lagrangian and Eulerian Time Correlations in Turbulence

NASA Technical Reports Server (NTRS)

Rubinstein, Robert; Zhou, Ye

1998-01-01

Taylor series expansions of turbulent time correlation functions are applied to show that helicity influences Eulerian time correlations more strongly than Lagrangian time correlations: to second order in time, the helicity effect on Lagrangian time correlations vanishes, but the helicity effect on Eulerian time correlations is nonzero. Fourier analysis shows that the helicity effect on Eulerian time correlations is confined to the largest inertial range scales. Some implications for sound radiation by swirling flows are discussed.

Approaches to ab initio molecular replacement of α-helical transmembrane proteins.

PubMed

Thomas, Jens M H; Simkovic, Felix; Keegan, Ronan; Mayans, Olga; Zhang, Chengxin; Zhang, Yang; Rigden, Daniel J

2017-12-01

α-Helical transmembrane proteins are a ubiquitous and important class of proteins, but present difficulties for crystallographic structure solution. Here, the effectiveness of the AMPLE molecular replacement pipeline in solving α-helical transmembrane-protein structures is assessed using a small library of eight ideal helices, as well as search models derived from ab initio models generated both with and without evolutionary contact information. The ideal helices prove to be surprisingly effective at solving higher resolution structures, but ab initio-derived search models are able to solve structures that could not be solved with the ideal helices. The addition of evolutionary contact information results in a marked improvement in the modelling and makes additional solutions possible.

Helical water wires.

PubMed

Liboff, A R; Poggi, C; Pratesi, P

2017-01-01

A helitetrahedral model has been proposed to help explain reports of low-frequency oscillations in pure water following electromagnetic excitation at the hydronium ion cyclotron resonance frequency. The Lorentz force and the intrinsic structure constrain the motion of the H 3 O + ion so that it enjoys a unique form of proton-hopping, one whose path is helical. This model may also explain the numerous previously observed cyclotron resonance (ICR) biological couplings for cations other than hydronium by merely substituting hydrogen-bonded versions of these for hydronium in the tetrahedral structure. Thus the effectiveness of resonance stimulation in biological systems is explained in terms of the enhanced conductivity and reduced scattering associated with proton-hopping. It is further shown that the addition of charge-balancing hydroxyl ions act to enable oscillatory electric dipole moments that propagate along the helical axis, giving rise to weak power (≈ femtoWatts) radiation patterns. It is conceivable that the radiation associated with this process may play a role in the interactions at the interface between water and living matter.

Chiral Sulfoxide-Induced Single Turn Peptide α-Helicity

PubMed Central

Zhang, Qingzhou; Jiang, Fan; Zhao, Bingchuan; Lin, Huacan; Tian, Yuan; Xie, Mingsheng; Bai, Guoyun; Gilbert, Adam M.; Goetz, Gilles H.; Liras, Spiros; Mathiowetz, Alan A.; Price, David A.; Song, Kun; Tu, Meihua; Wu, Yujie; Wang, Tao; Flanagan, Mark E.; Wu, Yun-Dong; Li, Zigang

2016-01-01

Inducing α-helicity through side-chain cross-linking is a strategy that has been pursued to improve peptide conformational rigidity and bio-availability. Here we describe the preparation of small peptides tethered to chiral sulfoxide-containing macrocyclic rings. Furthermore, a study of structure-activity relationships (SARs) disclosed properties with respect to ring size, sulfur position, oxidation state, and stereochemistry that show a propensity to induce α-helicity. Supporting data include circular dichroism spectroscopy (CD), NMR spectroscopy, and a single crystal X-ray structure for one such stabilized peptide. Finally, theoretical studies are presented to elucidate the effect of chiral sulfoxides in inducing backbone α-helicity. PMID:27934919

Numerical analysis on a passive chaotic micromixer with helical microchannel.

PubMed

Wang, Ruijin; Lin, Jianzhong

2006-01-01

In order to improve the mixing efficiency, the diffusion and mixing of species in the helical micro-mixer are simulated numerically. The results show that the mixing efficiency in the helical micromixer is much higher than that in the straight micro-channel and obviously higher than that in the serpentine micro-channel when Reynolds number is low. At high Reynolds number, even though the mixing efficiency in the helical micro-mixer is still much higher than that in the straight micro-channel, no obvious difference of mixing efficiency in the helical micro-mixer and serpentine micro-channel is found. The conclusions are helpful to optimize the structure of the micro-mixer.

Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings.

PubMed

Salmon, Loïc; Giambaşu, George M; Nikolova, Evgenia N; Petzold, Katja; Bhattacharya, Akash; Case, David A; Al-Hashimi, Hashim M

2015-10-14

Approaches that combine experimental data and computational molecular dynamics (MD) to determine atomic resolution ensembles of biomolecules require the measurement of abundant experimental data. NMR residual dipolar couplings (RDCs) carry rich dynamics information, however, difficulties in modulating overall alignment of nucleic acids have limited the ability to fully extract this information. We present a strategy for modulating RNA alignment that is based on introducing variable dynamic kinks in terminal helices. With this strategy, we measured seven sets of RDCs in a cUUCGg apical loop and used this rich data set to test the accuracy of an 0.8 μs MD simulation computed using the Amber ff10 force field as well as to determine an atomic resolution ensemble. The MD-generated ensemble quantitatively reproduces the measured RDCs, but selection of a sub-ensemble was required to satisfy the RDCs within error. The largest discrepancies between the RDC-selected and MD-generated ensembles are observed for the most flexible loop residues and backbone angles connecting the loop to the helix, with the RDC-selected ensemble resulting in more uniform dynamics. Comparison of the RDC-selected ensemble with NMR spin relaxation data suggests that the dynamics occurs on the ps-ns time scales as verified by measurements of R(1ρ) relaxation-dispersion data. The RDC-satisfying ensemble samples many conformations adopted by the hairpin in crystal structures indicating that intrinsic plasticity may play important roles in conformational adaptation. The approach presented here can be applied to test nucleic acid force fields and to characterize dynamics in diverse RNA motifs at atomic resolution.

A train of kink folds in the surficial salt of Qom Kuh, Central Iran

NASA Astrophysics Data System (ADS)

Cosgrove, John W.; Talbot, Christopher J.; Aftabi, Pedram

2009-11-01

The many subaerial extrusions of salt current in Iran are smaller and faster versions of steady state extrusions of metamorphic rocks from crustal channels in mountain chains. The extruded salt develops a variety of internal folds as the salt accumulates ductile displacements that can reach metres a year. Weather-induced elastic strains de-stress the outer layers of salt extrusions to a brittle carapace of broken dilated salt. Qom Kuh, situated in Central Iran, is a comparatively small and slow example of a viscous salt fountain and, as a result, its brittle elastic carapace may be thicker than most. This may account for Qom Kuh being the only salt fountain known to have a train of 10 m scale kink folds in its surficial salt. We attribute these folds to lateral shortening and back-shear of a surface-parallel planar mechanical anisotropy in the surficial salt induced by gravitationally driven ductile flow of the underlying salt. When it is dry, the elastic carapace is relatively strong and acts as a stiff corset impeding gravity spreading of the underlying confined salt. However, the carapace weakens and kinks on wetting, allowing the underlying salt to gravity spread. These folds illustrate how the weather can affect gravity spreading of surficial salt masses and how complex the interplay of tectonic and climatic signals can be in "steady state" mountains.

Studies of Solar Helicity Using Vector Magnetograms

NASA Technical Reports Server (NTRS)

Hagyard, Mona J.; Pevstov, Alexei A.

1999-01-01

observations of photospheric magnetic fields made with vector magnetographs have been used recently to study solar helicity. In this paper we indicate what can and cannot be derived from vector magnetograms, and point out some potential problems in these data that could affect the calculations of 'helicity'. Among these problems are magnetic saturation, Faraday rotation, low spectral resolution, and the method of resolving the ambiguity in the azimuth.

A HELICAL MAGNET DESIGN FOR RHIC.

DOE Office of Scientific and Technical Information (OSTI.GOV)

WILLEN,E.; GUPTA,R.; JAIN,A.

1997-05-12

Helical dipole magnets are required in a project for the Relativistic Heavy Ion Collider (RHIC) to control and preserve the beam polarization in order to allow the collision of polarized proton beams. Specifications are for low current superconducting magnets with a 100 mm coil aperture and a 4 Tesla field in which the field rotates 360 degrees over a distance of 2.4 meters. A magnet meeting the requirements has been developed that uses a small diameter cable wound into helical grooves machined into a thick-walled aluminum cylinder.

Functionalized Helical Building Blocks for Nanoelectronics.

PubMed

Khokhlov, Khrystofor; Schuster, Nathaniel J; Ng, Fay; Nuckolls, Colin

2018-04-06

Molecular building blocks are designed and created for the cis- and trans-dibrominated perylenediimides. The syntheses are simple and provide these useful materials on the gram scale. To demonstrate their synthetic versatility, these building blocks were used to create new dimeric perylenediimide helixes. Two of these helical dimers are twistacenes, and one is a helicene. Crucially, each possesses regiochemically defined functionality that allows the dimer helix to be elaborated into higher oligomers. It would be very difficult to prepare these helical PDI building blocks regioselectively without the methods described.

THE PERIOD RATIO FOR STANDING KINK AND SAUSAGE MODES IN SOLAR STRUCTURES WITH SIPHON FLOW. I. MAGNETIZED SLABS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li Bo; Habbal, Shadia Rifai; Chen Yanjun, E-mail: bbl@sdu.edu.cn

2013-04-20

In the applications of solar magneto-seismology, the ratio of the period of the fundamental mode to twice the period of its first overtone, P{sub 1}/2P{sub 2}, plays an important role. We examine how field-aligned flows affect the dispersion properties, and hence the period ratios, of standing modes supported by magnetic slabs in the solar atmosphere. We numerically solve the dispersion relations and devise a graphic means to construct standing modes. For coronal slabs, we find that the flow effects are significant for the fast kink and sausage modes alike. For the kink ones, they may reduce P{sub 1}/2P{sub 2} bymore » up to 23% compared with the static case, and the minimum allowed P{sub 1}/2P{sub 2} can fall below the lower limit analytically derived for static slabs. For the sausage modes, while introducing the flow reduces P{sub 1}/2P{sub 2} by typically {approx}< 5% relative to the static case, it significantly increases the threshold aspect ratio only above which standing sausage modes can be supported, meaning that their detectability is restricted to even wider slabs. In the case of photospheric slabs, the flow effect is not as strong. However, standing modes are distinct from the coronal case in that standing kink modes show a P{sub 1}/2P{sub 2} that deviates from unity even for a zero-width slab, while standing sausage modes no longer suffer from a threshold aspect ratio. We conclude that transverse structuring in plasma density and flow speed should be considered in seismological applications of multiple periodicities to solar atmospheric structures.« less

Kink dynamics in a parametric Φ 6 system: a model with controllably many internal modes

DOE PAGES

Demirkaya, A.; Decker, R.; Kevrekidis, P. G.; ...

2017-12-14

We explore a variant of the Φ 6 model originally proposed in Phys. Rev.D 12 (1975) 1606 as a prototypical, so-called, “bag” model in which domain walls play the role of quarks within hadrons. We examine the steady state of the model, namely an apparent bound state of two kink structures. We explore its linearization, and we find that, as a function of a parameter controlling the curvature of the potential, an effectively arbitrary number of internal modes may arise in the point spectrum of the linearization about the domain wall profile. We explore some of the key characteristics ofmore » kink-antikink collisions, such as the critical velocity and the multi-bounce windows, and how they depend on the principal parameter of the model. We find that the critical velocity exhibits a non-monotonic dependence on the parameter controlling the curvature of the potential. For the multi-bounce windows, we find that their range and complexity decrease as the relevant parameter decreases (and as the number of internal modes in the model increases). We use a modified collective coordinates method [in the spirit of recent works such as Phys. Rev.D 94 (2016) 085008] in order to capture the relevant phenomenology in a semi-analytical manner.« less

Kink dynamics in a parametric Φ 6 system: a model with controllably many internal modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Demirkaya, A.; Decker, R.; Kevrekidis, P. G.

We explore a variant of the Φ 6 model originally proposed in Phys. Rev.D 12 (1975) 1606 as a prototypical, so-called, “bag” model in which domain walls play the role of quarks within hadrons. We examine the steady state of the model, namely an apparent bound state of two kink structures. We explore its linearization, and we find that, as a function of a parameter controlling the curvature of the potential, an effectively arbitrary number of internal modes may arise in the point spectrum of the linearization about the domain wall profile. We explore some of the key characteristics ofmore » kink-antikink collisions, such as the critical velocity and the multi-bounce windows, and how they depend on the principal parameter of the model. We find that the critical velocity exhibits a non-monotonic dependence on the parameter controlling the curvature of the potential. For the multi-bounce windows, we find that their range and complexity decrease as the relevant parameter decreases (and as the number of internal modes in the model increases). We use a modified collective coordinates method [in the spirit of recent works such as Phys. Rev.D 94 (2016) 085008] in order to capture the relevant phenomenology in a semi-analytical manner.« less

Kink dynamics in a parametric ϕ 6 system: a model with controllably many internal modes

NASA Astrophysics Data System (ADS)

Demirkaya, A.; Decker, R.; Kevrekidis, P. G.; Christov, I. C.; Saxena, A.

2017-12-01

We explore a variant of the ϕ 6 model originally proposed in Phys. Rev. D 12 (1975) 1606 as a prototypical, so-called, "bag" model in which domain walls play the role of quarks within hadrons. We examine the steady state of the model, namely an apparent bound state of two kink structures. We explore its linearization, and we find that, as a function of a parameter controlling the curvature of the potential, an effectively arbitrary number of internal modes may arise in the point spectrum of the linearization about the domain wall profile. We explore some of the key characteristics of kink-antikink collisions, such as the critical velocity and the multi-bounce windows, and how they depend on the principal parameter of the model. We find that the critical velocity exhibits a non-monotonic dependence on the parameter controlling the curvature of the potential. For the multi-bounce windows, we find that their range and complexity decrease as the relevant parameter decreases (and as the number of internal modes in the model increases). We use a modified collective coordinates method [in the spirit of recent works such as Phys. Rev. D 94 (2016) 085008] in order to capture the relevant phenomenology in a semi-analytical manner.

Membrane-spanning α-helical barrels as tractable protein-design targets.

PubMed

Niitsu, Ai; Heal, Jack W; Fauland, Kerstin; Thomson, Andrew R; Woolfson, Derek N

2017-08-05

The rational ( de novo ) design of membrane-spanning proteins lags behind that for water-soluble globular proteins. This is due to gaps in our knowledge of membrane-protein structure, and experimental difficulties in studying such proteins compared to water-soluble counterparts. One limiting factor is the small number of experimentally determined three-dimensional structures for transmembrane proteins. By contrast, many tens of thousands of globular protein structures provide a rich source of 'scaffolds' for protein design, and the means to garner sequence-to-structure relationships to guide the design process. The α-helical coiled coil is a protein-structure element found in both globular and membrane proteins, where it cements a variety of helix-helix interactions and helical bundles. Our deep understanding of coiled coils has enabled a large number of successful de novo designs. For one class, the α-helical barrels-that is, symmetric bundles of five or more helices with central accessible channels-there are both water-soluble and membrane-spanning examples. Recent computational designs of water-soluble α-helical barrels with five to seven helices have advanced the design field considerably. Here we identify and classify analogous and more complicated membrane-spanning α-helical barrels from the Protein Data Bank. These provide tantalizing but tractable targets for protein engineering and de novo protein design.This article is part of the themed issue 'Membrane pores: from structure and assembly, to medicine and technology'. © 2017 The Author(s).

Hub vortex helical instability as the origin of wake meandering in the lee of a model wind-turbine

NASA Astrophysics Data System (ADS)

Viola, Francesco; Iungo, Giacomo Valerio; Camarri, Simone; Porte-Agel, Fernando; Gallaire, Francois

2012-11-01

Wind tunnel measurements were performed for the wake produced by a three-bladed wind turbine immersed in uniform flow. These tests show the presence of a vorticity structure in the near wake region mainly oriented along the streamwise direction, which is denoted as hub vortex. The hub vortex is characterized by oscillations with frequencies lower than the one connected to the rotational velocity of the rotor, which are ascribed to wake meandering by previous works. This phenomenon consists in transversal oscillations of the wind turbine wake, which are excited by the shedding of vorticity structures from the rotor disc acting as a bluff body. In this work temporal and spatial linear stability analyses of a wind turbine wake are performed on a base flow obtained through time-averaged wind tunnel velocity measurements. This study shows that the low frequency spectral component detected experimentally is the result of a convective instability of the hub vortex, which is characterized by a counter-winding single-helix structure. Simultaneous hot-wire measurements confirm the presence of a helicoidal unstable mode of the hub vortex with a streamwise wavenumber roughly equal to the one predicted from the linear instability analysis.

Trefoil knot timescales for reconnection and helicity

NASA Astrophysics Data System (ADS)

Kerr, Robert M.

2018-02-01

Three-dimensional images of evolving numerical trefoil vortex knots are used to study the growth and decay of the enstrophy and helicity. Negative helicity density (h< 0) plays several roles. First, during anti-parallel reconnection, sheets of oppositely signed helicity dissipation of equal magnitude on either side of the maximum of the enstrophy dissipation allow the global helicity { H } to be preserved through the first reconnection, as suggested theoretically (Laing et al 2015 Sci. Rep. 5 9224) and observed experimentally (Scheeler et al 2014a Proc. Natl Acad. Sci. 111 15350-5). Next, to maintain the growth of the enstrophy and positive helicity within the trefoil while { H } is preserved, h< 0 forms in the outer parts of the trefoil so long as the periodic boundaries do not interfere. To prevent that, the domain size {\\ell } is increased as the viscosity ν \\to 0. Combined, this allows two sets of trefoils to form a new scaling regime with linearly decreasing {(\\sqrt{ν }Z(t))}-1/2 up to common ν-independent times t x that the graphics show is when the first reconnection ends. During this phase there is good correspondence between the evolution of the simulated vortices and the reconnecting experimental trefoil of Kleckner and Irvine (2017 Nat. Phys. 9 253-8) when time is scaled by their respective nonlinear timescales t f . The timescales t f are based upon by the radii r f of the trefoils and their circulations Γ, so long as the strong camber of the experimental hydrofoil models is used to correct the published experimental circulations Γ that use only the flat-plate approximation.

Helical structures in a Rosette elephant trunk

NASA Astrophysics Data System (ADS)

Carlqvist, Per; Kristen, Helmuth; Gahm, Gosta F.

1998-04-01

We discuss small-scale, helical, interstellar filaments on the basis of optical observations of an elephant trunk in the Rosette nebula. The trunk studied is composed of a number of sinusoidal or serpentine-like dark filaments, preferentially in the outer part of the trunk, where their wavelength is 7-9 times the trunk radius. The diameters are down to the limit of resolution of 1.0 arcsec, corresponding to 1600 au, and ranging up to about 6400 au. At some positions filament crossings give rise to enhanced extinction. We suggest that the sinusoidal filaments are helices lined up by magnetic fields. We derive average extinctions of 0.5-1.0 mag in the filaments, implying molecular densities of n_H2 ~ 10(4) cm(-3) . From existing data on the Rosette HiI region, we conclude that the surrounding kinetic and dynamic pressure and the background radiation field suffice to balance even the denser filaments and to exert drag forces on the trunk as a whole, consistent with evidence of stretching of the trunk. The helical magnetic structures imply the presence of electric currents along the trunk axis. These currents should form a nearly force-free geometry and are consistent with a model consisting of 4-7 helical cables on the surface of a cylinder and which produce the observed wavelength of the helices. We suggest that the Rosette elephant trunks form an interconnected system of rope-like structures which are relics from filamentary skeletons of magnetic fields in the primordial cloud. Based on observations collected at the Nordic Optical Telescope, La Palma, Spain

Towards a Predictive Capability for Local Helicity Injection Startup

NASA Astrophysics Data System (ADS)

Barr, J. L.; Bongard, M. W.; Burke, M. G.; Fonck, R. J.; Hinson, E. T.; Lewicki, B. T.; Perry, J. M.; Redd, A. J.; Schlossberg, D. J.

2014-10-01

Local helicity injection (LHI) is a non-solenoidal tokamak startup technique under development on the Pegasus ST. New designs of the injector cathode geometry and plasma-facing shield rings support high-voltage operation up to 1.5 kV. This leads to reduced requirements in injector area for a given helicity input rate. Near-term experiments in Pegasus are testing the gain in Ip obtained with a 1 . 5 × increase in the helicity input rate and the efficacy of helicity injection in the lower divertor region. A predictive model for LHI is needed to project scalable scenarios for larger devices. A lumped-parameter circuit model using power and helicity balance is being developed for LHI on Pegasus-U and NSTX-U. The model indicates that MA-class startup on NSTX-U will require operating in a regime where the drive from LHI dominates the inductive effects arising from dynamically evolving plasma geometry. The physics of this new regime can be tested in Pegasus-U at Ip ~ 0 . 3 MA. The LHI systems on the proposed Pegasus-U will be expanded to provide 3 - 4 × helicity injection rate and the toroidal field doubled to reach this regime. Predictive models to be validated on Pegasus-U include the 0-D power balance model, NIMROD, and TSC. Work supported by US DOE Grants DE-FG02-96ER54375 and DE-SC0006928.

Controllable helical deformations on printed anisotropic composite soft actuators

NASA Astrophysics Data System (ADS)

Wang, Dong; Li, Ling; Serjouei, Ahmad; Dong, Longteng; Weeger, Oliver; Gu, Guoying; Ge, Qi

2018-04-01

Helical shapes are ubiquitous in both nature and engineering. However, the development of soft actuators and robots that mimic helical motions has been hindered primarily due to the lack of efficient modeling approaches that take into account the material anisotropy and the directional change of the external loading point. In this work, we present a theoretical framework for modeling controllable helical deformations of cable-driven, anisotropic, soft composite actuators. The framework is based on the minimum potential energy method, and its model predictions are validated by experiments, where the microarchitectures of the soft composite actuators can be precisely defined by 3D printing. We use the developed framework to investigate the effects of material and geometric parameters on helical deformations. The results show that material stiffness, volume fraction, layer thickness, and fiber orientation can be used to control the helical deformation of a soft actuator. In particular, we found that a critical fiber orientation angle exists at which the twist of the actuator changes the direction. Thus, this work can be of great importance for the design and fabrication of soft actuators with tailored deformation behavior.

Structures of the transmembrane helices of the G-protein coupled receptor, rhodopsin.

PubMed

Katragadda, M; Chopra, A; Bennett, M; Alderfer, J L; Yeagle, P L; Albert, A D

2001-07-01

An hypothesis is tested that individual peptides corresponding to the transmembrane helices of the membrane protein, rhodopsin, would form helices in solution similar to those in the native protein. Peptides containing the sequences of helices 1, 4 and 5 of rhodopsin were synthesized. Two peptides, with overlapping sequences at their termini, were synthesized to cover each of the helices. The peptides from helix 1 and helix 4 were helical throughout most of their length. The N- and C-termini of all the peptides were disordered and proline caused opening of the helical structure in both helix 1 and helix 4. The peptides from helix 5 were helical in the middle segment of each peptide, with larger disordered regions in the N- and C-termini than for helices 1 and 4. These observations show that there is a strong helical propensity in the amino acid sequences corresponding to the transmembrane domain of this G-protein coupled receptor. In the case of the peptides from helix 4, it was possible to superimpose the structures of the overlapping sequences to produce a construct covering the whole of the sequence of helix 4 of rhodopsin. As similar superposition for the peptides from helix 1 also produced a construct, but somewhat less successfully because of the disordering in the region of sequence overlap. This latter problem was more severe for helix 5 and therefore a single peptide was synthesized for the entire sequence of this helix, and its structure determined. It proved to be helical throughout. Comparison of all these structures with the recent crystal structure of rhodopsin revealed that the peptide structures mimicked the structures seen in the whole protein. Thus similar studies of peptides may provide useful information on the secondary structure of other transmembrane proteins built around helical bundles.

Helically twisted photonic crystal fibres

NASA Astrophysics Data System (ADS)

Russell, P. St. J.; Beravat, R.; Wong, G. K. L.

2017-02-01

Recent theoretical and experimental work on helically twisted photonic crystal fibres (PCFs) is reviewed. Helical Bloch theory is introduced, including a new formalism based on the tight-binding approximation. It is used to explore and explain a variety of unusual effects that appear in a range of different twisted PCFs, including fibres with a single core and fibres with N cores arranged in a ring around the fibre axis. We discuss a new kind of birefringence that causes the propagation constants of left- and right-spinning optical vortices to be non-degenerate for the same order of orbital angular momentum (OAM). Topological effects, arising from the twisted periodic `space', cause light to spiral around the fibre axis, with fascinating consequences, including the appearance of dips in the transmission spectrum and low loss guidance in coreless PCF. Discussing twisted fibres with a single off-axis core, we report that optical activity in a PCF is opposite in sign to that seen in a step-index fibre. Fabrication techniques are briefly described and emerging applications reviewed. The analytical results of helical Bloch theory are verified by an extensive series of `numerical experiments' based on finite-element solutions of Maxwell's equations in a helicoidal frame. This article is part of the themed issue 'Optical orbital angular momentum'.

Helical Spin Order from Topological Dirac and Weyl Semimetals

DOE PAGES

Sun, Xiao-Qi; Zhang, Shou-Cheng; Wang, Zhong

2015-08-14

In this paper, we study dynamical mass generation and the resultant helical spin orders in topological Dirac and Weyl semimetals, including the edge states of quantum spin Hall insulators, the surface states of weak topological insulators, and the bulk materials of Weyl semimetals. In particular, the helical spin textures of Weyl semimetals manifest the spin-momentum locking of Weyl fermions in a visible manner. Finally, the spin-wave fluctuations of the helical order carry electric charge density; therefore, the spin textures can be electrically controlled in a simple and predictable manner.

QUANTIFYING THE TOPOLOGY AND EVOLUTION OF A MAGNETIC FLUX ROPE ASSOCIATED WITH MULTI-FLARE ACTIVITIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Kai; Guo, Yang; Ding, M. D., E-mail: dmd@nju.edu.cn

2016-06-20

Magnetic flux ropes (MFRs) play an important role in solar activities. The quantitative assessment of the topology of an MFR and its evolution is crucial for a better understanding of the relationship between the MFR and associated activities. In this paper, we investigate the magnetic field of active region (AR) 12017 from 2014 March 28–29, during which time 12 flares were triggered by intermittent eruptions of a filament (either successful or confined). Using vector magnetic field data from the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory , we calculate the magnetic energy and helicity injection in themore » AR, and extrapolate the 3D magnetic field with a nonlinear force-free field model. From the extrapolations, we find an MFR that is cospatial with the filament. We further determine the configuration of this MFR from the closed quasi-separatrix layer (QSL) around it. Then, we calculate the twist number and the magnetic helicity for the field lines composing the MFR. The results show that the closed QSL structure surrounding the MFR becomes smaller as a consequence of flare occurrence. We also find that the flares in our sample are mainly triggered by kink instability. Moreover, the twist number varies more sensitively than other parameters with the occurrence of flares.« less

Fabrication of a magnetic helical mesostructured silica rod

NASA Astrophysics Data System (ADS)

Zhang, Lei; Zhang Qiao, Shi; Cheng, Lina; Yan, Zifeng; Qing Lu, Gao Max

2008-10-01

We report a one-step synthesis of magnetic helical mesostructured silica (MHMS) by self-assembly of an achiral surfactant, magnetic nanocrystals with stearic acid ligands and silicate. This core-shell structured material consists of an Fe3O4 superparamagnetic nanocrystal core and a highly ordered periodic helical mesoporous silica shell. We propose that the formation of the helical structure is induced by the interaction between the surfactant and dissociated stearic acid ligands. The MHMS obtained possesses superparamagnetism, uniform mesostructure, narrow pore size distribution, high surface area, and large pore volume. Furthermore, the drug release process is demonstrated using aspirin as a drug model and MHMS as a drug carrier in a sodium phosphate buffer solution.

Space vehicle electromechanical system and helical antenna winding fixture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Judd, Stephen; Dallmann, Nicholas; Guenther, David

A space vehicle electromechanical system may employ an architecture that enables convenient and practical testing, reset, and retesting of solar panel and antenna deployment on the ground. A helical antenna winding fixture may facilitate winding and binding of the helical antenna.

Self-assembly of hard helices: a rich and unconventional polymorphism.

PubMed

Kolli, Hima Bindu; Frezza, Elisa; Cinacchi, Giorgio; Ferrarini, Alberta; Giacometti, Achille; Hudson, Toby S; De Michele, Cristiano; Sciortino, Francesco

2014-11-07

Hard helices can be regarded as a paradigmatic elementary model for a number of natural and synthetic soft matter systems, all featuring the helix as their basic structural unit, from natural polynucleotides and polypeptides to synthetic helical polymers, and from bacterial flagella to colloidal helices. Here we present an extensive investigation of the phase diagram of hard helices using a variety of methods. Isobaric Monte Carlo numerical simulations are used to trace the phase diagram; on going from the low-density isotropic to the high-density compact phases a rich polymorphism is observed, exhibiting a special chiral screw-like nematic phase and a number of chiral and/or polar smectic phases. We present full characterization of the latter, showing that they have unconventional features, ascribable to the helical shape of the constituent particles. Equal area construction is used to locate the isotropic-to-nematic phase transition, and the results are compared with those stemming from an Onsager-like theory. Density functional theory is also used to study the nematic-to-screw-nematic phase transition; within the simplifying assumption of perfectly parallel helices, we compare different levels of approximation, that is second- and third-virial expansions and a Parsons-Lee correction.

Numerical Analysis of Helical Pile-Soil Interaction under Compressive Loads

NASA Astrophysics Data System (ADS)

Polishchuk, A. I.; Maksimov, F. A.

2017-11-01

The results of the field tests of full-scale steel helical piles in clay soils intended for prefabricated temporary buildings foundations are presented in this article. The finite element modeling was used for the evaluation of stress distribution of the clay soil around helical piles. An approach of modeling of the screw-pile geometry has been proposed through the Finite Element Analysis. Steel helical piles with a length of 2.0 m, shaft diameter of 0.108 m and a blade diameter of 0.3 m were used in the experiments. The experiments have shown the efficiency of double-bladed helical piles in the clay soils compared to single-bladed piles. It has been experimentally established that the introduction of the second blade into the pile shaft provides an increase of the bearing capacity in clay soil up to 30% compared to a single-bladed helical pile with similar geometrical dimensions. The numerical results are compared with the measurements obtained by a large scale test and the bearing capacity has been estimated. It has been found that the model results fit the field results. For a double-bladed helical pile it was revealed that shear stresses upon pile loading are formed along the lateral surface forming a cylindrical failure surface.